Citrus Sinensis ID: 005459

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690------
Protein Sequence
MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVTNY
Secondary Structure (PSIPRED)
cccccccccEEcccccccccccEEEEEEEcccEEEEEccccEEEEEccccEEEEEEEEcccHHHHccccEEEEEEcccccEEEEEEcccEEEEEEEEEcccEEEEcccccccccEEEEEEEcccEEEccccccEEEEEEEcccEEEEEEccccEEEEEcccccccEEEEEEEcccccccEEEccccccccccccccccEEEcccccccccEEEEEEEcccEEEEEEEcccEEEEEEEcccccccccEEEEEEEccccccEEEEEcccccEEEEEEEccEEEEEEccccccEEEEEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEcccccccccEEEEEcccEEEEEEccccccEEEEEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEEccccEEEEEccccccEEEEEEEEEEEccEEEEEEEEcccccEEEEEEEcccccccccEEEEEEccccEEEEccccEEEEEEcccEEEEEEEEEEccccccccccEEEEEEEEEEcccccccccEEEEccccccccccccccccccccccccccccEEEEEEccEEEEEEccccccccccccccEEEEccccccccccccccccEEEccccccEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccEccccccccccccEEEEEccccEEEEEEEccEEEEEEccccEEEEEEEEEcHHHHHHccccEEEEEcccccEEEEEEcccEEEEEEEEEccccccccccccccccccccccccEEEEEEEcccEEEEEEEccccEEEEEEcccEEEEEEEcccccccEEEccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccccccccEEEEEEcccEEEEEEEEcccEEEEEEEccccccccEEEEccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccHHcccccccccccccccccccccccccHHHcccEEEEEcccccEEEEEcccccccEEEEEEEHcccccccccccccEEEEEcccEEEEEEccccccccEEEEEccHHHHHccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEccHHHHHHHHcccEEEEccEEEEEEEEEcccccEEEEEEccccccccEEEEEEccccEEEEEccccEEEEEEcccEEEEEEEEEccccccccccEEEEEEEEEEEEccccccccEEEEEEcccccccccccccccccccccccccEEEEEEEccEEEEEEccccccHHHHHcEEEEEEccccccccccHHHHHHHHHccccccEEEcc
Coil and Loop (DISEMBL)
mymaygwpqvipleqglcpssqqIIYFKVnngllliaspchielwsssqhkvrlgkykrdsesvqregenlqavwspdtKLIAVVTSSLYLHIFKVQITEksiqiggkqpsgLFFIKISLVLneqlpfaekglsvsnivsdnkhmllglsdgslysisWKGEFYGAFELVhssndssvaalshhfpsnglasvdtsgafvsdhkfpiSSAIIWLELCLPMRLLFVLysngqlmscsvskkgLKLAEFIKIDkelgsgdavcasiapeqQILAVGTRRGVVELYDLAESASLIRTVSlydwgysmddtgpvsciawtpdnsafavgwksrgltvwsvSGCRLMSTIRQISlssisspivkpnqdckyeplmsgtsmmqwdeyGYRLYAIEEGSSERVLIFSFGKcclnrgvsgmtyaRQVIYGEDrllvvqsedtdelkilhlnlpvsyisqnwpvqhvaasKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNyidssntyellfypryhldqssLLCRKSllakpivmdvYEDYILvtyrpfdvHIFHVKlfgeltpsttpdlqlsTVRELSIMTakshpaamrfipdqvprecslnnhvstssdmlarEPARCLILRAngelslldlddgrereltDSVELFWVTCgqleektslieevswldygyrgmqvtny
Flexible Loop (DISEMBL)
MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYkrdsesvqregenlqavwspdtKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISlssisspivkpnqdCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKiqskgllwlGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFgeltpsttpdlqLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWVtcgqleektslieevswldygyrgmqvtny
Low Complexity Region (SEG)
MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANgelslldlddgrerelTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVTNY
Disordered region (IsUnstruct)
**MAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKV******************LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSS****VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIM**********FI************************PARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGM*****
Disordered Region (DISOPRED)
MYMAYGWPQVIPL*****PSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK******************LVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGEL******DLQLSTVRELSIMTAKSHPAAMRFIPD***********************ARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVT**
Disordered Region (DISEMBL)
MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSS**********************LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVTNY
Disordered Region (DISPRO)
MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSL*****TSSDMLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVTNY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVTNY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	696	2.2.26 [Sep-21-2011]
Q69ZJ7	1422	Protein RIC1 homolog OS=M	yes	no	0.932	0.456	0.236	2e-34
Q4ADV7	1423	Protein RIC1 homolog OS=H	no	no	0.932	0.456	0.232	8e-33
Q9V3C5	1429	Protein RIC1 homolog OS=D	yes	no	0.912	0.444	0.225	3e-25
O42656	1052	Protein ric1 OS=Schizosac	yes	no	0.326	0.215	0.270	1e-11
Q09417	1470	Protein RIC1 homolog OS=C	yes	no	0.706	0.334	0.189	4e-11

>sp|Q69ZJ7|RIC1_MOUSE Protein RIC1 homolog OS=Mus musculus GN=Kiaa1432 PE=2 SV=2

 Score =  147 bits (372), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 187/791 (23%), Positives = 319/791 (40%), Gaps = 142/791 (17%)

Query: 1   MYMAYGWPQVIPLEQGLC-PSSQQIIYFKVNN----GLLLIASPCHIELWSSSQHKVRLG 55
           MY   GWP+ +     LC P S       V +        + +P  + +W S +  V + 
Sbjct: 1   MYFLSGWPKRL-----LCAPRSPAEAPLHVQSDPRRAFFAVLAPARLSIWYS-RPSVLIV 54

Query: 56  KYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQ-------ITEKSIQIGGK 108
            YK  ++S  + G   QA W PD+ +IAV T++ Y+  F +        + E     G  
Sbjct: 55  TYKEPAKSSTQFGSYKQAEWRPDSTMIAVSTANGYILFFHITSSRGDKYLYEPVYPKGSP 114

Query: 109 QPSGLFFIK-------ISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKG 161
           Q  G+   K       ++L + + L      +S+ +++ D   +L+  SDG L+ I W+G
Sbjct: 115 QMKGIPHFKEEHCAPALNLEMKKILDLQAPIMSLQSVLED---LLVATSDGLLHLIHWEG 171

Query: 162 EFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221
              G   +  S+   SV   S              G+F+      I      +E C  + 
Sbjct: 172 MTNGRKAINLSTVPFSVDLQSSRV-----------GSFLGFADVHIKD----MEYCATLD 216

Query: 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVE 281
              V++++G++   +         +   +  +    D  C ++  + +++A G   G V+
Sbjct: 217 GFAVVFNDGKVGFITPVSSRFTAEQLHGVWPQ-DVIDGTCVAVNNKYRLMAFGCASGCVQ 275

Query: 282 LYDLAESAS---LIRTVSLYDWGYS--MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336
           +Y +  +     L   + L    Y    + TG V  I W+PDNSA  V W+  GL++WSV
Sbjct: 276 VYTIDNTTGAMLLSHKLELTAKQYPDIWNKTGAVKLIRWSPDNSAVIVTWEYGGLSLWSV 335

Query: 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSER- 395
            G +L+ T+               +   K +PL   +  M W   GY L+ I    S+  
Sbjct: 336 FGAQLICTL--------GGDFAYRSDGTKKDPLKINS--MSWGAEGYHLWVISGLGSQHT 385

Query: 396 --------------VLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD------ 435
                         +L+F F K  L          + ++ GEDRL +   E +       
Sbjct: 386 QIETDLRSTVKEPSILLFQFIKSVLTVNPCMSNQEQVLLQGEDRLYLNCGEASQAQNPKY 445

Query: 436 -----ELKILHLNLPV--------------------------SYISQNWPVQHVAASKDG 464
                E    H   P                           +Y+  NWP++  A  K G
Sbjct: 446 SSARAERMPRHEKSPFADGGLEAPGLSTLLGHRHWHVVQISSTYLESNWPIRFSAIDKLG 505

Query: 465 MFLAVAGLHGLILYDIRQKKWRVFGDITQEQK-IQSKGLLWLGKIIVVCNYIDSSNTYEL 523
             +AVAG  G   Y +  KKW++FG+ITQEQ  I + GL W    +V+  Y  S    EL
Sbjct: 506 QNIAVAGKFGFAHYSLLTKKWKLFGNITQEQNMIVTGGLAWWDDFMVLACYNLSDCQEEL 565

Query: 524 LFYPRY-HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTP 582
             Y R  +LD +     K+ + + +++ V+ D ++V      + ++ ++   + + +TT 
Sbjct: 566 RIYLRTSNLDNAFAHVTKAPM-ETLLLSVFRDMVVVFRADCSICLYSIERKSDGS-NTTA 623

Query: 583 DLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANG 642
            +Q+  ++E+S+     HP     +        S  N +S      AR+ A  ++L   G
Sbjct: 624 SVQV--LQEVSMSRYIPHPF---LVVSVTLTSVSTENGISLKMPQQARD-AESIMLNLAG 677

Query: 643 ELSLLDLDDG----RERE----------------LTDSVELFWVTCGQLEEKTSLIEEVS 682
           +L ++  D      RE++                L  SVE  W TC   ++K  L+E + 
Sbjct: 678 QLIMMQRDRSGPQIREKDSHPNQRKLLPFCPPVVLAQSVENVWTTCRANKQKRHLLEAL- 736

Query: 683 WLDYGYRGMQV 693
           WL  G  GM+V
Sbjct: 737 WLSCGGAGMKV 747

Required for phosphorylation and localization of GJA1.
Mus musculus (taxid: 10090)

>sp|Q4ADV7|RIC1_HUMAN Protein RIC1 homolog OS=Homo sapiens GN=KIAA1432 PE=1 SV=2

 Score =  142 bits (358), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 184/792 (23%), Positives = 317/792 (40%), Gaps = 143/792 (18%)

Query: 1   MYMAYGWPQVIPLEQGLCP-SSQQIIYFKVNN----GLLLIASPCHIELWSSSQHKVRLG 55
           MY   GWP+ +     LCP  S     F V +        + +   + +W S +  V + 
Sbjct: 1   MYFLSGWPKRL-----LCPLGSPAEAPFHVQSDPQRAFFAVLAAARLSIWYS-RPSVLIV 54

Query: 56  KYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT-------EKSIQIGGK 108
            YK  ++S  + G   QA W PD+ +IAV T++ Y+  F +  T       E     G  
Sbjct: 55  TYKEPAKSSTQFGSYKQAEWRPDSTMIAVSTANGYILFFHITSTRGDKYLYEPVYPKGSP 114

Query: 109 QPSGLFFIK-------ISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKG 161
           Q  G    K       ++L + + L      +S+ +++ D   +L+  SDG L+ I W+G
Sbjct: 115 QMKGTPHFKEEQCAPALNLEMRKILDLQAPIMSLQSVLED---LLVATSDGLLHLIHWEG 171

Query: 162 EFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221
              G   +   +   SV   S        + V +   F   H       I  +E C  + 
Sbjct: 172 MTNGRKAINLCTVPFSVDLQS--------SRVGSFLGFTDVH-------IRDMEYCATLD 216

Query: 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVE 281
              V++++G++   +         +   +  +    D  C ++  + +++A G   G V+
Sbjct: 217 GFAVVFNDGKVGFITPVSSRFTAEQLHGVWPQ-DVVDGTCVAVNNKYRLMAFGCVSGSVQ 275

Query: 282 LYDLAESAS---LIRTVSLYDWGYS--MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336
           +Y +  S     L   + L    Y    + TG V  + W+PDNS   V W+  GL++WSV
Sbjct: 276 VYTIDNSTGAMLLSHKLELTAKQYPDIWNKTGAVKLMRWSPDNSVVIVTWEYGGLSLWSV 335

Query: 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSER- 395
            G +L+ T+               +   K +PL   +  M W   GY L+ I    S+  
Sbjct: 336 FGAQLICTL--------GGDFAYRSDGTKKDPLKINS--MSWGAEGYHLWVISGFGSQNT 385

Query: 396 --------------VLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLV-------VQSEDT 434
                         +L+F F K  L          + ++ GEDRL +        Q+  +
Sbjct: 386 EIESDLRSVVKQPSILLFQFIKSVLTVNPCMSNQEQVLLQGEDRLYLNCGEASQTQNPRS 445

Query: 435 DELKILH------------------------------LNLPVSYISQNWPVQHVAASKDG 464
                 H                              + +  +Y+  NWP++  A  K G
Sbjct: 446 SSTHSEHKPSREKSPFADGGLESQGLSTLLGHRHWHVVQISSTYLESNWPIRFSAIDKLG 505

Query: 465 MFLAVAGLHGLILYDIRQKKWRVFGDITQEQK-IQSKGLLWLGKIIVVCNYIDSSNTYEL 523
             +AV G  G   Y +  KKW++FG+ITQEQ  I + GL W    +V+  Y  +    EL
Sbjct: 506 QNIAVVGKFGFAHYSLLTKKWKLFGNITQEQNMIVTGGLAWWNDFMVLACYNINDRQEEL 565

Query: 524 LFYPRY-HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTP 582
             Y R  +LD +     K+  A+ +++ V++D ++V      + ++ ++   +  P+TT 
Sbjct: 566 RVYLRTSNLDNAFAHVTKA-QAETLLLSVFQDMVIVFRADCSICLYSIERKSD-GPNTTA 623

Query: 583 DLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANG 642
            +Q+  ++E+S+     HP     +        S  N ++      AR  A  ++L   G
Sbjct: 624 GIQV--LQEVSMSRYIPHPF---LVVSVTLTSVSTENGITLKMPQQARG-AESIMLNLAG 677

Query: 643 ELSLLDLDDG----RERE-----------------LTDSVELFWVTCGQLEEKTSLIEEV 681
           +L ++  D      RE++                 L  SVE  W TC   ++K  L+E +
Sbjct: 678 QLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWTTCRANKQKRHLLEAL 737

Query: 682 SWLDYGYRGMQV 693
            WL  G  GM+V
Sbjct: 738 -WLSCGGAGMKV 748

Required for phosphorylation and localization of GJA1.

Homo sapiens (taxid: 9606)

>sp|Q9V3C5|RIC1_DROME Protein RIC1 homolog OS=Drosophila melanogaster GN=CG9063 PE=1 SV=1

 Score =  117 bits (293), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 177/786 (22%), Positives = 310/786 (39%), Gaps = 151/786 (19%)

Query: 1   MYMAYGWPQVIPLE--------QGLCPSSQQIIYFKVNNGLLLI--ASPCHIELWSSSQH 50
           MY   GWP+ + L         + +C  + +I+   V +  L I  A+P           
Sbjct: 1   MYYPVGWPKRVGLALPGESASIRHICCDAVKILVAAVGDDFLGIWYANPL---------- 50

Query: 51  KVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQI----- 105
            + +  ++R  +S+++ G N   VW PD++ +A++T+S  L ++++      + I     
Sbjct: 51  -IPIAYFRRTEDSLRQYGANQLIVWKPDSRQLALLTASGSLLLYQLDFEANGMGILQQID 109

Query: 106 ----GGKQPSGLFFIKIS---LVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSIS 158
                 K+ S   FIK +   L L E        +  +        +LL      L  + 
Sbjct: 110 PPAASLKRDSAELFIKENIPRLSLRELCSVTLGSVITTVCCISLSELLLATQSCELLRLQ 169

Query: 159 WKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPIS--SAIIWLEL 216
           W        EL H+ ND  + ALS     +    V       + +  P++  S +  LE 
Sbjct: 170 WT-------ELEHAENDLELPALSSIKLRDIPFYVQQQPQQSARNVPPLNRDSYVASLE- 221

Query: 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSG-------DAVCASIAPEQQ 269
                  +  +  G     S  +    +A  ++ + +   G       DA   S+  + +
Sbjct: 222 -------YSPFIGGCAAVFSDRRAAFLIANHLRFETDHMHGFWVPDVEDASVCSVNHKFR 274

Query: 270 ILAVGTRRGVVELYDLAE-------SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF 322
           +LA G     V++Y + +       S  LI T ++       D  G V+ + W+PD    
Sbjct: 275 LLAYGQESSAVKVYAIDDATGGLEFSHRLILTENILP-----DSLGSVNELKWSPDGCVL 329

Query: 323 AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD--CKYEPLMSGTSMMQWDE 380
           AV W + GL++WS  G  LMST+         S     N D  C+  PL      ++W  
Sbjct: 330 AVSWTNGGLSLWSTFGALLMSTL---------SWDFGLNVDLVCQ-NPLK--IRRLEWST 377

Query: 381 YGYRLYAIE---EGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQ------- 430
            GY+L+ ++   E     VL   F K  L+      T    ++ G+D L + Q       
Sbjct: 378 EGYQLFMLKLHPEKDKSNVLQLQFVKSALSMNPCMTTSPHILLQGDDCLYLNQGNNLELT 437

Query: 431 -------------------SEDTDELKILH----------------LNLPVSYISQNWPV 455
                              S D D L++                  L LP++Y + NWP+
Sbjct: 438 YAGSHGTFPSSGLGSDEDISGDGDCLELKQSPHTGSILTESKYWTVLQLPLNYAATNWPI 497

Query: 456 QHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQK-IQSKGLLWLGKIIVVCNY 514
           ++ A   DG+ LAVAG  GL  Y +  ++W++FG+ +QE+  + S GLLW    +V+  Y
Sbjct: 498 RYAAIDPDGLHLAVAGRTGLAHYSLVTRRWKLFGNESQEKDFVVSGGLLWWHGFVVMGCY 557

Query: 515 IDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFG 574
                T EL  YP      +    +  + A  I ++ +   ++V      V +F+     
Sbjct: 558 SLLDRTDELRCYPADCKLDNQYGHKLQVRAPVISLNSFRHQLIVLTADGIVSLFN----- 612

Query: 575 ELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPAR 634
            ++ ++   L +    EL + +   HPA +  +        +L N +      L  + A 
Sbjct: 613 -MSKNSAYALDIECAYELDVKSICIHPACIVSL-----TVTNLKNELKPQG-QLGGDQAE 665

Query: 635 CLILRANGELSLLDLDDGRERE-------LTDSVELFWVTCGQLEEKTSLIEEVSWLDYG 687
            +I+   G + ++  D G +         L   VE+FW++   LE     + +  WL  G
Sbjct: 666 TIIVNVCGRILMIQRDAGEQVPNTLLATCLASCVEVFWLS-HSLER--CAMRDCLWLYSG 722

Query: 688 YRGMQV 693
             GM+V
Sbjct: 723 AHGMRV 728

Drosophila melanogaster (taxid: 7227)

>sp|O42656|RIC1_SCHPO Protein ric1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ric1 PE=1 SV=2

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 124/262 (47%), Gaps = 35/262 (13%)

Query: 445 PVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQ-SKGLL 503
           P  Y++  WP+++V+   DG  +A+AGLHGL +Y   +K W ++ D   EQ I  +  ++
Sbjct: 489 PQPYVASEWPIRYVSIKDDGSLIAIAGLHGLAIYVCSKKTWFLYKDANMEQLISVTCPMI 548

Query: 504 WLGKII---VVCNYIDSSNTYEL-LFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVT 559
           W  + +   VVC      + +EL L+  +  LD    L + S  +  + M V ++Y LV 
Sbjct: 549 WCSQFLLAGVVC-----ESNFELHLYKAKGPLDDRENLAKLSFTSTIVTMSVCDEYSLVV 603

Query: 560 YRPFDVHIFHVKL-FGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLN 618
           Y   D  + H++    EL       L+L  +  ++     + P+ +R I   +P++  L 
Sbjct: 604 YTA-DNFLHHIRFDINELGR-----LELDYLTSVNFAPIFTTPSRVRSITLLLPKD--LA 655

Query: 619 NHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERE-------LTDSVELFWVTCGQL 671
           N     SD+L       L++  NG+L LL L     +E       L   VE +++   Q 
Sbjct: 656 N--IQPSDLLFYA---VLLVLINGKLVLLSLKKQHSKELLYQCSMLAGDVEFYFINGSQ- 709

Query: 672 EEKTSLIEEVSWLDYGYRGMQV 693
            E  SL   + W+  G +G+++
Sbjct: 710 -EIPSLFHSI-WIMTG-KGLKL 728

Required for efficient fusion of endosome-derived vesicles with the Golgi.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q09417|RIC1_CAEEL Protein RIC1 homolog OS=Caenorhabditis elegans GN=R06F6.8 PE=3 SV=2

 Score = 70.9 bits (172), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 106/560 (18%), Positives = 218/560 (38%), Gaps = 68/560 (12%)

Query: 1   MYMAYGWPQVIPL---EQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKY 57
           M++    P V+ L   E+    +  + I    +  L+ +A+   I +W ++   +     
Sbjct: 1   MFIPNDRPSVLQLPKHEKDSTAADIKSIVANRDRRLIAVATNDAIYIWLANPQLLLCSVG 60

Query: 58  KRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIK 117
             D+   +  GE  +  W PD+  IAV T+   + I+ + + +          +  +F +
Sbjct: 61  VIDANFKETRGELKEIYWKPDSTSIAVTTNQCKILIYNLDLRDDEQCYNFTDSADPYFQR 120

Query: 118 IS--LVLNEQLPFAEKGLSV--------SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAF 167
            S  L +    P A    ++        +  V      L+ L +G  + ++W GE   + 
Sbjct: 121 NSPELFIKGSRPTAHLHPTIIINLADIPTCCVPSRDEFLVCLQNGFTHHVTWTGEIIASL 180

Query: 168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF-VL 226
               SS   SV  L     S  + S                S  I+  +  P+   F ++
Sbjct: 181 SFRASSIPFSVDQLQSK--SENITS---------------KSTYIFDAVYAPLLGGFAIV 223

Query: 227 YSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286
            S+GQ    + +         + +       DA C  +  +  ++  G + G V  Y++ 
Sbjct: 224 LSDGQGALLTSNDPNFAPNAILGVWAP-NMKDATCCDVNHKFLLILFGCKNGDVCAYNID 282

Query: 287 E-SASLIRTVSLYDWGYSMDDT----GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-- 339
           E + SL+++  +     +  D     GPV  I    +   F   W         +SG   
Sbjct: 283 ELNGSLVQSFRVAPKVTNGPDLTNRLGPVHRITALANGYGFGAIWSP-------LSGAHA 335

Query: 340 --RLMSTIRQISLSSISS--PIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSER 395
             RL++        S  +   +V+ +Q+ +Y       + ++W   G++L+    G+   
Sbjct: 336 LPRLVAVFTSFGAQSFCNLEGVVEEDQNDRY-------TAIEWGPEGFQLWL---GTENE 385

Query: 396 VLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL------HLNLPVSYI 449
           +++  F +       +     R V+  + ++L+  + D +           H+ +   Y+
Sbjct: 386 LMMQPFVRSASCSSPAMEHCDRAVLMSDSQVLISAARDREAEACAPHSVWDHITVTHEYL 445

Query: 450 SQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKG--LLWLGK 507
           S NWP+++ +  ++   L VAG  G+    +  ++W++FG+ TQE+ +   G   +W   
Sbjct: 446 SSNWPLRYASTDRNYKHLVVAGDQGMAYCSLSNRRWKIFGNETQEKNLLVTGGVFIWNDD 505

Query: 508 IIVVCNYIDSSNTYELLFYP 527
           +I V      ++   L FYP
Sbjct: 506 VIGVVGVAADTDKSHLSFYP 525

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	696
224064053	1122	predicted protein [Populus trichocarpa]	0.992	0.615	0.818	0.0
255541662	1124	conserved hypothetical protein [Ricinus	0.995	0.616	0.825	0.0
359489664	1126	PREDICTED: protein RIC1 homolog isoform	0.994	0.614	0.814	0.0
297745353	1124	unnamed protein product [Vitis vinifera]	0.991	0.613	0.813	0.0
356568415	1121	PREDICTED: protein RIC1 homolog isoform	0.988	0.613	0.788	0.0
147860649	1122	hypothetical protein VITISV_010293 [Viti	0.975	0.605	0.810	0.0
356531967	1121	PREDICTED: protein RIC1 homolog isoform	0.988	0.613	0.791	0.0
87162909	1123	WD40-like [Medicago truncatula]	0.995	0.617	0.789	0.0
357507433	1168	RIC1-like protein [Medicago truncatula]	0.995	0.593	0.783	0.0
449441620	1135	PREDICTED: protein RIC1 homolog [Cucumis	0.992	0.608	0.748	0.0

>gi|224064053|ref|XP_002301368.1| predicted protein [Populus trichocarpa] gi|222843094|gb|EEE80641.1| predicted protein [Populus trichocarpa]

 Score = 1176 bits (3041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/693 (81%), Positives = 623/693 (89%), Gaps = 2/693 (0%)

Query: 1   MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRD 60
           MYMAYGWPQVIPLEQGLCPS Q+IIYFKV N L L+ SP  +ELWSSSQHKVRLGKYKRD
Sbjct: 1   MYMAYGWPQVIPLEQGLCPSQQRIIYFKVINRLFLVVSPSRLELWSSSQHKVRLGKYKRD 60

Query: 61  SESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISL 120
           +ES++REGEN+QAVWSPDTKLIA++T+S +LHIFKVQ +EK IQIGGKQPSGLF   I+L
Sbjct: 61  AESLEREGENIQAVWSPDTKLIAILTTSFFLHIFKVQFSEKRIQIGGKQPSGLFLANITL 120

Query: 121 VLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180
           VLNEQ+PFA+K L+VSN VSDNKHMLLGLS+GSLYSISWKGEFYGAFE+   S DSS  +
Sbjct: 121 VLNEQVPFADKELTVSNFVSDNKHMLLGLSNGSLYSISWKGEFYGAFEINPYSRDSSDTS 180

Query: 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK 240
           +S H   NG AS   S   VS+H     +AI+ LELCLPMRLLFVLYS+GQL+SCSVSK+
Sbjct: 181 ISPHSLGNGFASGRASSGSVSNHNITRKTAIVQLELCLPMRLLFVLYSDGQLVSCSVSKR 240

Query: 241 GLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300
           GLK  E+IK +K+LGS DAVC S+A +QQILAVGTRRGVVELY+LAESASLIR+VSL DW
Sbjct: 241 GLKQVEYIKPEKKLGSDDAVCTSVASDQQILAVGTRRGVVELYNLAESASLIRSVSLSDW 300

Query: 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360
           GYSMD+TGPVSCIAWTPDNSAFAVGWK RGLTVWSVSGCRLMSTIRQI L S+SSP VKP
Sbjct: 301 GYSMDETGPVSCIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGL-SLSSPKVKP 359

Query: 361 NQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVI 420
           NQ+CKYE LM+GTS+MQWDEYGY+LY IEE S ERV+ FSFGKCCL+RGVSGMTY RQVI
Sbjct: 360 NQECKYEALMNGTSLMQWDEYGYKLYVIEEESLERVIAFSFGKCCLSRGVSGMTYVRQVI 419

Query: 421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 480
           YGEDRLLVVQSEDTDEL+ILHLNLPVSYISQNWPVQHVAASKDGM LAVAGLHGLILYDI
Sbjct: 420 YGEDRLLVVQSEDTDELRILHLNLPVSYISQNWPVQHVAASKDGMHLAVAGLHGLILYDI 479

Query: 481 RQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK 540
           + KKWRVFGDITQEQKIQ KGLLWLGKI+VVCNYIDSSNTYELLFYPRYHLDQSSLLCRK
Sbjct: 480 QLKKWRVFGDITQEQKIQCKGLLWLGKIVVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK 539

Query: 541 SLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSH 600
            LLAKP+VMDVY+D+ILVTYRPFDVHIFHV+L GELTPS+TPDLQLSTVRELSIMTAKSH
Sbjct: 540 PLLAKPMVMDVYQDHILVTYRPFDVHIFHVRLLGELTPSSTPDLQLSTVRELSIMTAKSH 599

Query: 601 PAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDS 660
           PAAMRFIPD++PRE + +NH+S SS+ L  EPARCLILR NGELSLLDLDDG ERELTDS
Sbjct: 600 PAAMRFIPDRLPRELASDNHIS-SSEFLDTEPARCLILRTNGELSLLDLDDGHERELTDS 658

Query: 661 VELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQV 693
           VELFWVTCGQ EEK SLIEEVSWLDYG+RGMQV
Sbjct: 659 VELFWVTCGQSEEKASLIEEVSWLDYGHRGMQV 691

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541662|ref|XP_002511895.1| conserved hypothetical protein [Ricinus communis] gi|223549075|gb|EEF50564.1| conserved hypothetical protein [Ricinus communis]

 Score = 1165 bits (3014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/693 (82%), Positives = 621/693 (89%)

Query: 1   MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRD 60
           MYMAYGWPQVIPLE GLCPSSQQIIY KV N LLL+ SP H+ELWSSSQHKVRLGKYKRD
Sbjct: 1   MYMAYGWPQVIPLEPGLCPSSQQIIYLKVINRLLLVVSPSHLELWSSSQHKVRLGKYKRD 60

Query: 61  SESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISL 120
           +ESV++EGENLQAVWSPD KLIAV+TSSL+LHIFKVQ +EK IQIGGKQ SGLF   ISL
Sbjct: 61  AESVEKEGENLQAVWSPDAKLIAVLTSSLFLHIFKVQFSEKRIQIGGKQLSGLFLANISL 120

Query: 121 VLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180
           +L+EQ+PFAEK L+VSNIVSDNK MLLGLS GSLYSISWKGEF G+FEL    ++S+ A+
Sbjct: 121 LLSEQVPFAEKDLTVSNIVSDNKFMLLGLSSGSLYSISWKGEFCGSFELDPCPHESTEAS 180

Query: 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK 240
           +  H   NGLAS    G FVS+H     SAI  LE C PMRLL VLYS+GQL+SCSVSKK
Sbjct: 181 ILPHSLVNGLASGGVLGDFVSNHNISKKSAITRLEFCFPMRLLLVLYSDGQLVSCSVSKK 240

Query: 241 GLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300
           GLK AE IK++K+LGSGDAVC S+A EQQILAVGTR+G+VELYDL ESASLIRTVSL DW
Sbjct: 241 GLKQAESIKVEKKLGSGDAVCTSVASEQQILAVGTRKGIVELYDLTESASLIRTVSLCDW 300

Query: 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360
           GYS+D TG VSCIAW PDNSAFAVGWK RGLTVWSVSGCRLMSTIRQI LSS+SSP+VKP
Sbjct: 301 GYSVDATGSVSCIAWAPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSVSSPVVKP 360

Query: 361 NQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVI 420
           NQDCKYEPL+ GTS++QWDEYGY+LYAIEEGS ER+L FSFGKCCL+RGVSGMTY RQVI
Sbjct: 361 NQDCKYEPLIGGTSLLQWDEYGYKLYAIEEGSLERMLAFSFGKCCLSRGVSGMTYVRQVI 420

Query: 421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 480
           YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM+LAVAGLHGLILYD+
Sbjct: 421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMYLAVAGLHGLILYDM 480

Query: 481 RQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK 540
           R KKWRVFGDITQEQKIQ KGLLWLGKI+VVCNYIDSSN YELLFYPRYHLDQSSLLCRK
Sbjct: 481 RLKKWRVFGDITQEQKIQCKGLLWLGKIVVVCNYIDSSNMYELLFYPRYHLDQSSLLCRK 540

Query: 541 SLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSH 600
            LLAKP+VMDVY+DYILVTYRPFDVHIFHV L GELTP  TPDLQLSTVRELSIMTAKSH
Sbjct: 541 PLLAKPMVMDVYQDYILVTYRPFDVHIFHVNLHGELTPHRTPDLQLSTVRELSIMTAKSH 600

Query: 601 PAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDS 660
           PAAMRFIPDQ+ RE +  NH+S SSD+L REPARCLILRANG+LSLLDLDDGRERELTDS
Sbjct: 601 PAAMRFIPDQIVREGAFKNHISPSSDLLVREPARCLILRANGDLSLLDLDDGRERELTDS 660

Query: 661 VELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQV 693
           VELFWVTCGQ EEKT+LIE+VSWLDYG+RGMQV
Sbjct: 661 VELFWVTCGQSEEKTNLIEDVSWLDYGHRGMQV 693

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489664|ref|XP_003633961.1| PREDICTED: protein RIC1 homolog isoform 1 [Vitis vinifera]

 Score = 1151 bits (2977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/695 (81%), Positives = 621/695 (89%), Gaps = 3/695 (0%)

Query: 1   MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRD 60
           MYMAYGWPQVIPLEQ LCP+S+QI+Y K+ N LLL+ +P H+ELWS SQHKVRLGKYKRD
Sbjct: 1   MYMAYGWPQVIPLEQALCPTSEQIVYLKLVNRLLLVVAPSHLELWSCSQHKVRLGKYKRD 60

Query: 61  SESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISL 120
           ++S+QREGEN++AVWSPD KLIAV+TSS +LHIFKVQ  EK IQIGGKQPSGLF   ISL
Sbjct: 61  ADSIQREGENMKAVWSPDAKLIAVLTSSFFLHIFKVQFMEKKIQIGGKQPSGLFLATISL 120

Query: 121 VLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS-VA 179
           +L+EQ+PFA+K L+VSNIVSDNKHMLLGLSDGSLY+ISWKGEF GAFEL    +DS+ V+
Sbjct: 121 LLSEQVPFAKKDLTVSNIVSDNKHMLLGLSDGSLYTISWKGEFCGAFELDSPMHDSNKVS 180

Query: 180 ALSHHFPSNGLASVDTSGAF-VSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS 238
            LSH    NG++S    G    S H     SA+I LEL L +RLLFVLYS+GQL+ CSVS
Sbjct: 181 ELSHSL-DNGVSSRGAPGVVSTSTHNTSQQSAVIQLELSLLLRLLFVLYSDGQLVLCSVS 239

Query: 239 KKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298
           KKGLK AE IK +  LGSGD+VCASIA EQQILAVGTRRGVVELYDLAESASLIRTVSLY
Sbjct: 240 KKGLKQAELIKAEMRLGSGDSVCASIASEQQILAVGTRRGVVELYDLAESASLIRTVSLY 299

Query: 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358
           DWGYSMDDTGPVSCIAWTPDNSAFAVGWK RGLTVWSVSGCRLMSTIRQ+ LSS+SSP+V
Sbjct: 300 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQMGLSSVSSPVV 359

Query: 359 KPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQ 418
           KPNQDCK+EP+M GTS+MQWDEYGYRLYAIEE   ER++ FSFGKCCLNRGVSG TY RQ
Sbjct: 360 KPNQDCKFEPMMGGTSLMQWDEYGYRLYAIEERCIERIVAFSFGKCCLNRGVSGTTYVRQ 419

Query: 419 VIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILY 478
           VIYGEDRLLVVQSEDTDELKI HLNLPVSYISQNWPVQHV ASKDGM+LAVAGLHGLILY
Sbjct: 420 VIYGEDRLLVVQSEDTDELKIFHLNLPVSYISQNWPVQHVVASKDGMYLAVAGLHGLILY 479

Query: 479 DIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLC 538
           DIR KKWR+FGDI+QEQKIQ  GLLWLGKI+VVCNY+DSSNTYELLFYPRYHLDQSSLL 
Sbjct: 480 DIRLKKWRMFGDISQEQKIQCNGLLWLGKIVVVCNYVDSSNTYELLFYPRYHLDQSSLLG 539

Query: 539 RKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAK 598
           RK+LLAKP+VMDVY+DYILVTYRPFDVHIFHVKL GELTPS TPDLQLSTVRELSIMTAK
Sbjct: 540 RKTLLAKPMVMDVYQDYILVTYRPFDVHIFHVKLSGELTPSRTPDLQLSTVRELSIMTAK 599

Query: 599 SHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELT 658
           +HP+AMRFIPDQ+PRE    NH+S+SSD+LAREPARCLILR NGELSLLDLDDGRERELT
Sbjct: 600 THPSAMRFIPDQLPREYISKNHISSSSDLLAREPARCLILRVNGELSLLDLDDGRERELT 659

Query: 659 DSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQV 693
           DSVELFWVTCGQ EEKT+LIEEVSWLDYG+RGMQV
Sbjct: 660 DSVELFWVTCGQSEEKTNLIEEVSWLDYGHRGMQV 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745353|emb|CBI40433.3| unnamed protein product [Vitis vinifera]

 Score = 1146 bits (2965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/693 (81%), Positives = 619/693 (89%), Gaps = 3/693 (0%)

Query: 3   MAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSE 62
           MAYGWPQVIPLEQ LCP+S+QI+Y K+ N LLL+ +P H+ELWS SQHKVRLGKYKRD++
Sbjct: 1   MAYGWPQVIPLEQALCPTSEQIVYLKLVNRLLLVVAPSHLELWSCSQHKVRLGKYKRDAD 60

Query: 63  SVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVL 122
           S+QREGEN++AVWSPD KLIAV+TSS +LHIFKVQ  EK IQIGGKQPSGLF   ISL+L
Sbjct: 61  SIQREGENMKAVWSPDAKLIAVLTSSFFLHIFKVQFMEKKIQIGGKQPSGLFLATISLLL 120

Query: 123 NEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS-VAAL 181
           +EQ+PFA+K L+VSNIVSDNKHMLLGLSDGSLY+ISWKGEF GAFEL    +DS+ V+ L
Sbjct: 121 SEQVPFAKKDLTVSNIVSDNKHMLLGLSDGSLYTISWKGEFCGAFELDSPMHDSNKVSEL 180

Query: 182 SHHFPSNGLASVDTSGAF-VSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK 240
           SH    NG++S    G    S H     SA+I LEL L +RLLFVLYS+GQL+ CSVSKK
Sbjct: 181 SHSL-DNGVSSRGAPGVVSTSTHNTSQQSAVIQLELSLLLRLLFVLYSDGQLVLCSVSKK 239

Query: 241 GLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300
           GLK AE IK +  LGSGD+VCASIA EQQILAVGTRRGVVELYDLAESASLIRTVSLYDW
Sbjct: 240 GLKQAELIKAEMRLGSGDSVCASIASEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 299

Query: 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360
           GYSMDDTGPVSCIAWTPDNSAFAVGWK RGLTVWSVSGCRLMSTIRQ+ LSS+SSP+VKP
Sbjct: 300 GYSMDDTGPVSCIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQMGLSSVSSPVVKP 359

Query: 361 NQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVI 420
           NQDCK+EP+M GTS+MQWDEYGYRLYAIEE   ER++ FSFGKCCLNRGVSG TY RQVI
Sbjct: 360 NQDCKFEPMMGGTSLMQWDEYGYRLYAIEERCIERIVAFSFGKCCLNRGVSGTTYVRQVI 419

Query: 421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 480
           YGEDRLLVVQSEDTDELKI HLNLPVSYISQNWPVQHV ASKDGM+LAVAGLHGLILYDI
Sbjct: 420 YGEDRLLVVQSEDTDELKIFHLNLPVSYISQNWPVQHVVASKDGMYLAVAGLHGLILYDI 479

Query: 481 RQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK 540
           R KKWR+FGDI+QEQKIQ  GLLWLGKI+VVCNY+DSSNTYELLFYPRYHLDQSSLL RK
Sbjct: 480 RLKKWRMFGDISQEQKIQCNGLLWLGKIVVVCNYVDSSNTYELLFYPRYHLDQSSLLGRK 539

Query: 541 SLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSH 600
           +LLAKP+VMDVY+DYILVTYRPFDVHIFHVKL GELTPS TPDLQLSTVRELSIMTAK+H
Sbjct: 540 TLLAKPMVMDVYQDYILVTYRPFDVHIFHVKLSGELTPSRTPDLQLSTVRELSIMTAKTH 599

Query: 601 PAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDS 660
           P+AMRFIPDQ+PRE    NH+S+SSD+LAREPARCLILR NGELSLLDLDDGRERELTDS
Sbjct: 600 PSAMRFIPDQLPREYISKNHISSSSDLLAREPARCLILRVNGELSLLDLDDGRERELTDS 659

Query: 661 VELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQV 693
           VELFWVTCGQ EEKT+LIEEVSWLDYG+RGMQV
Sbjct: 660 VELFWVTCGQSEEKTNLIEEVSWLDYGHRGMQV 692

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568415|ref|XP_003552406.1| PREDICTED: protein RIC1 homolog isoform 1 [Glycine max]

 Score = 1134 bits (2934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/696 (78%), Positives = 605/696 (86%), Gaps = 8/696 (1%)

Query: 1   MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRD 60
           MYMAYGWPQVIPLEQGLCPS+Q+I+Y KV N  LL+ SP H ELWS+SQH+VRLGKYKRD
Sbjct: 1   MYMAYGWPQVIPLEQGLCPSAQKIVYLKVINRTLLVVSPTHFELWSTSQHRVRLGKYKRD 60

Query: 61  SESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISL 120
           S+S+QREGENLQAVWSPD KLIA++TS+ +LHIFKVQ+++K I  GGKQPS L    ISL
Sbjct: 61  SDSLQREGENLQAVWSPDAKLIAILTSAFFLHIFKVQLSDKRIHTGGKQPSALCLATISL 120

Query: 121 VLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELV---HSSNDSS 177
           +L EQ+PF  K LSVSNIVSDNKHMLLGLSDG+LYS+SWKGEFYGAF+      +S D+S
Sbjct: 121 LLTEQVPFTAKDLSVSNIVSDNKHMLLGLSDGTLYSMSWKGEFYGAFQFYPQPTASFDNS 180

Query: 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV 237
              L+     NGL+        +S+H  P  S I  LELCLP+R LFVLYS+G+L+SCSV
Sbjct: 181 QMPLTLE---NGLSPKSHPKVLMSNHIIPRKSEINQLELCLPLRFLFVLYSDGELVSCSV 237

Query: 238 SKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297
           SKKGLK  + IK +K L  GDAVCAS+A EQQILAVGT+RG+VELYDLAES SLIR VSL
Sbjct: 238 SKKGLKQVDCIKAEKRLACGDAVCASVALEQQILAVGTKRGIVELYDLAESVSLIRAVSL 297

Query: 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 357
           YDWGYSMDDTGPVS IAWTPDNSAFAVGWK RGLTVWSVSGCRLMSTIRQI LSS+SSPI
Sbjct: 298 YDWGYSMDDTGPVSFIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSVSSPI 357

Query: 358 VKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYAR 417
            KPN DCKYEPLM GTS+MQWDEYGYRLYAIE GSSER+L FSFGKCCL+RGVSG TY R
Sbjct: 358 SKPNHDCKYEPLMGGTSLMQWDEYGYRLYAIEVGSSERILSFSFGKCCLSRGVSGTTYIR 417

Query: 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLIL 477
           QVIYGEDRLL+VQSE+TDELK+LHL LPVSYISQNWPVQHVAAS+DGM+LAVAGLHGLIL
Sbjct: 418 QVIYGEDRLLIVQSEETDELKMLHLKLPVSYISQNWPVQHVAASQDGMYLAVAGLHGLIL 477

Query: 478 YDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLL 537
           YDIR K+WRVFGD+TQEQKIQ KGLLWLGKI+VVCNY+DSSNTYELLFYPRYHLDQSSLL
Sbjct: 478 YDIRLKRWRVFGDVTQEQKIQCKGLLWLGKIVVVCNYVDSSNTYELLFYPRYHLDQSSLL 537

Query: 538 CRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTA 597
           CRK LLAKP+VMDVY+DY+L+TYRPF VHIFHVKLFGELTPS  PDLQLS VRELSIMTA
Sbjct: 538 CRKPLLAKPMVMDVYQDYMLLTYRPFVVHIFHVKLFGELTPSGNPDLQLSAVRELSIMTA 597

Query: 598 KSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGREREL 657
           KSHPAAMRFIPDQ+PRE   NN V   SD L REPARCLILRANGELSLLDLDDGRER L
Sbjct: 598 KSHPAAMRFIPDQLPRESISNNLV--LSDSLTREPARCLILRANGELSLLDLDDGRERNL 655

Query: 658 TDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQV 693
           TDSVELFWVTCGQ E+KT+LIEEVSWLDYG+RGMQV
Sbjct: 656 TDSVELFWVTCGQSEDKTNLIEEVSWLDYGHRGMQV 691

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860649|emb|CAN81454.1| hypothetical protein VITISV_010293 [Vitis vinifera]

 Score = 1121 bits (2900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/682 (81%), Positives = 608/682 (89%), Gaps = 3/682 (0%)

Query: 14  EQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQA 73
           EQ LCP+S+QI+Y K+ N LLL+ +P H+ELWS SQHKVRLGKYKRD++S+QREGEN++A
Sbjct: 10  EQALCPTSEQIVYLKLVNRLLLVVAPSHLELWSCSQHKVRLGKYKRDADSIQREGENMKA 69

Query: 74  VWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGL 133
           VWSPD KLIAV+TSS +LHIFKVQ  EK IQIGGKQPSGLF   ISL+L+EQ+PFA+K L
Sbjct: 70  VWSPDAKLIAVLTSSFFLHIFKVQFXEKKIQIGGKQPSGLFLATISLLLSEQVPFAKKDL 129

Query: 134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS-VAALSHHFPSNGLAS 192
           +VSNIVSDNKHMLLGLSDGSLY+ISWKGEF GAFEL    +DS+ V+ LSH    NG++S
Sbjct: 130 TVSNIVSDNKHMLLGLSDGSLYTISWKGEFCGAFELDSPMHDSNKVSELSHSL-DNGVSS 188

Query: 193 VDTSGAF-VSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID 251
               G    S H     SA+I LEL L +RLLFVLYS+GQL+ CSVSKKGLK AE IK +
Sbjct: 189 RGAPGVVSTSTHNTSQQSAVIQLELSLLLRLLFVLYSDGQLVLCSVSKKGLKQAELIKAE 248

Query: 252 KELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS 311
             LGSGD+VCASIA EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS
Sbjct: 249 TRLGSGDSVCASIASEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS 308

Query: 312 CIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371
           CIAWTPDNSAFAVGWK RGLTVWSVSGCRLMSTIRQ+ LSS+SSP+VKPNQDCK+EP+M 
Sbjct: 309 CIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQMGLSSVSSPVVKPNQDCKFEPMMG 368

Query: 372 GTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQS 431
           GTS+MQWDEYGYRLYAIEE   ER++ FSFGKCCLNRGVSG TY RQVIYGEDRLLVVQS
Sbjct: 369 GTSLMQWDEYGYRLYAIEERCIERIVAFSFGKCCLNRGVSGTTYVRQVIYGEDRLLVVQS 428

Query: 432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDI 491
           EDTDELKI HLNLPVSYISQNWPVQHV ASKDGM+LAVAGLHGLILYDIR KKWR+FGDI
Sbjct: 429 EDTDELKIFHLNLPVSYISQNWPVQHVVASKDGMYLAVAGLHGLILYDIRLKKWRMFGDI 488

Query: 492 TQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDV 551
           +QEQKIQ  GLLWLGKI+VVCNY+DSSNTYELLFYPRYHLDQSSLL RK+LLAKP+VMDV
Sbjct: 489 SQEQKIQCNGLLWLGKIVVVCNYVDSSNTYELLFYPRYHLDQSSLLGRKTLLAKPMVMDV 548

Query: 552 YEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQV 611
           Y+DYILVTYRPFDVHIFHVKL GELTPS TPDLQLSTVRELSIMTAK+HP+AMRFIPDQ+
Sbjct: 549 YQDYILVTYRPFDVHIFHVKLSGELTPSRTPDLQLSTVRELSIMTAKTHPSAMRFIPDQL 608

Query: 612 PRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQL 671
           PRE    NH+S+SSD+LAREPARCLILR NGELSLLDLDDGRERELTDSVELFWVTCGQ 
Sbjct: 609 PREYISKNHISSSSDLLAREPARCLILRVNGELSLLDLDDGRERELTDSVELFWVTCGQS 668

Query: 672 EEKTSLIEEVSWLDYGYRGMQV 693
           EEKT+LIEEVSWLDYG+RGMQV
Sbjct: 669 EEKTNLIEEVSWLDYGHRGMQV 690

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531967|ref|XP_003534547.1| PREDICTED: protein RIC1 homolog isoform 1 [Glycine max]

 Score = 1115 bits (2885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/696 (79%), Positives = 609/696 (87%), Gaps = 8/696 (1%)

Query: 1   MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRD 60
           MYMAYGWPQVIPLEQGL PS+Q+I+Y K+ N  LL+ SP H ELWS+SQH+VRLGKYKRD
Sbjct: 1   MYMAYGWPQVIPLEQGLSPSAQKIVYLKLINRTLLVVSPTHFELWSTSQHRVRLGKYKRD 60

Query: 61  SESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISL 120
           S+S+QREGENLQA WSPD KLIA++TS+ +LHIFKVQ+++K I  GGKQPS L    +SL
Sbjct: 61  SDSLQREGENLQAAWSPDAKLIAILTSAFFLHIFKVQLSDKRIHTGGKQPSALCLATVSL 120

Query: 121 VLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFEL---VHSSNDSS 177
           +L EQ+PFA K LSVSNIVSDNKHMLLGLSDG+LYS+SWKGEFYGAF+      SS D+S
Sbjct: 121 LLTEQVPFAVKDLSVSNIVSDNKHMLLGLSDGTLYSMSWKGEFYGAFQFDPQPTSSFDNS 180

Query: 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV 237
              L+     NGL+        +S+H  P  S I  LELCLP+RLLFVLYS+GQL+SCSV
Sbjct: 181 QMPLTLE---NGLSPKSHPKVLMSNHIIPRKSEINQLELCLPLRLLFVLYSDGQLVSCSV 237

Query: 238 SKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297
           SKKGLK  + IK +K L  GDAVCAS+A EQQILAVGT+RG+VELYDLAES SLIR VSL
Sbjct: 238 SKKGLKQVDCIKAEKSLACGDAVCASVALEQQILAVGTKRGIVELYDLAESVSLIRAVSL 297

Query: 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 357
           YDWGYSMDDTGPVSCIAWTPDNSAFAVGWK RGLTVWSVSGCRLMSTIRQI LSS+SSPI
Sbjct: 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSVSSPI 357

Query: 358 VKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYAR 417
            KPN DCKYEPLM GTS+MQWDEYGYRLYAIE GSSER++ FSFGKCCL+RGVSG TY R
Sbjct: 358 SKPNHDCKYEPLMGGTSLMQWDEYGYRLYAIEVGSSERIISFSFGKCCLSRGVSGTTYIR 417

Query: 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLIL 477
           QVIYGEDRLL+VQSE+TDELK+LHL LPVSYISQNWPVQHVAAS+DGM+LAVAGLHGLIL
Sbjct: 418 QVIYGEDRLLIVQSEETDELKMLHLKLPVSYISQNWPVQHVAASQDGMYLAVAGLHGLIL 477

Query: 478 YDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLL 537
           YDIR K+WRVFGD+TQEQKIQ KGLLWLGKI+VVCNY+DSSNTYELLFYPRYHLDQSSLL
Sbjct: 478 YDIRLKRWRVFGDVTQEQKIQCKGLLWLGKIVVVCNYVDSSNTYELLFYPRYHLDQSSLL 537

Query: 538 CRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTA 597
           CRK LLAKP+VMDVY DY+L+TYRPFDVHIFHVKLFGELTPS  PDLQLS VRELSIMTA
Sbjct: 538 CRKPLLAKPMVMDVYLDYMLLTYRPFDVHIFHVKLFGELTPSGNPDLQLSAVRELSIMTA 597

Query: 598 KSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGREREL 657
           KSHPAAMRFIPDQ PRE S++N +S SSD L REPARCLILRANGELSLLDLDDGRER L
Sbjct: 598 KSHPAAMRFIPDQFPRE-SISN-ISVSSDSLTREPARCLILRANGELSLLDLDDGRERNL 655

Query: 658 TDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQV 693
           TDSVELFWVTCGQ E+KT+LIEEVSWLDYG+RGMQV
Sbjct: 656 TDSVELFWVTCGQSEDKTNLIEEVSWLDYGHRGMQV 691

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87162909|gb|ABD28704.1| WD40-like [Medicago truncatula]

 Score = 1107 bits (2863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/693 (78%), Positives = 600/693 (86%)

Query: 1   MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRD 60
           MYMAYGWPQVIPL+QGL PS  +++YFK+ N LLLI SP H ELWSSSQH+VRLGKYKRD
Sbjct: 1   MYMAYGWPQVIPLDQGLSPSEHKVVYFKLINRLLLIVSPTHFELWSSSQHRVRLGKYKRD 60

Query: 61  SESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISL 120
           S+S+QREGENLQAVWSPD KLIA++TSS YLHIFKVQ  +K I IGGKQPS L    ISL
Sbjct: 61  SDSLQREGENLQAVWSPDAKLIAILTSSFYLHIFKVQFLDKKIYIGGKQPSALCLATISL 120

Query: 121 VLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180
           +L+EQ+PFAEK LSVSNIV DNKHMLLGLSDG+LYS+SWKGEFYGAF+       S   +
Sbjct: 121 LLSEQVPFAEKDLSVSNIVCDNKHMLLGLSDGTLYSMSWKGEFYGAFQFESHPPASFDDS 180

Query: 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK 240
              H   NGL+          +H  P +S I  LELCL +RLLFVLYS+GQL+SCS+SKK
Sbjct: 181 QLPHPLENGLSPKGLPKVPTLNHILPRNSEIKHLELCLSLRLLFVLYSDGQLVSCSISKK 240

Query: 241 GLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300
           GLK  + IK +K L  GDAVCAS A EQ+ILAVGTRRG VELYDLAES SLIRTVSLYDW
Sbjct: 241 GLKQVDCIKAEKRLACGDAVCASAALEQEILAVGTRRGTVELYDLAESTSLIRTVSLYDW 300

Query: 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360
           G+SMDDTGPVSCIAWTPDNSAFAVGWK RGLTVWSVSGCRLMSTIRQI LSS+SSPI KP
Sbjct: 301 GFSMDDTGPVSCIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSVSSPIAKP 360

Query: 361 NQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVI 420
           N DCKYEPLM GTS+MQWDE+GYRLYAIEE SSER++ FSFGKCCL+RGVSG TY RQVI
Sbjct: 361 NHDCKYEPLMGGTSLMQWDEHGYRLYAIEERSSERIISFSFGKCCLSRGVSGTTYTRQVI 420

Query: 421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 480
           YGEDRLL+VQSE+ DELK+LHL LPVSYISQNWPVQ+VAAS+DGM+LAVAGLHGLILYDI
Sbjct: 421 YGEDRLLIVQSEEIDELKMLHLKLPVSYISQNWPVQYVAASQDGMYLAVAGLHGLILYDI 480

Query: 481 RQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK 540
           R K+WRVFGD+TQEQKIQ KGLLWLGKI+VVCNYIDSSNTYELLFYPRYHLDQSSLLCRK
Sbjct: 481 RMKRWRVFGDVTQEQKIQCKGLLWLGKIVVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK 540

Query: 541 SLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSH 600
            L AKPIVMDVY+DYILVTYRPFDVHIFHVKLFGELTPS  PDLQLS VRELSIMTAKSH
Sbjct: 541 PLFAKPIVMDVYQDYILVTYRPFDVHIFHVKLFGELTPSGNPDLQLSAVRELSIMTAKSH 600

Query: 601 PAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDS 660
           PAAMRFIPDQ+PRE    N++S+SSD    EPARCLILR+NGELSLLDLDDGRER LTDS
Sbjct: 601 PAAMRFIPDQLPRELISKNYISSSSDSSTAEPARCLILRSNGELSLLDLDDGRERNLTDS 660

Query: 661 VELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQV 693
           VELFWVTCGQ E+KT+LIEEVSWLDYG+RGMQV
Sbjct: 661 VELFWVTCGQSEDKTNLIEEVSWLDYGHRGMQV 693

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507433|ref|XP_003624005.1| RIC1-like protein [Medicago truncatula] gi|355499020|gb|AES80223.1| RIC1-like protein [Medicago truncatula]

 Score = 1102 bits (2849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/698 (78%), Positives = 600/698 (85%), Gaps = 5/698 (0%)

Query: 1   MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRD 60
           MYMAYGWPQVIPL+QGL PS  +++YFK+ N LLLI SP H ELWSSSQH+VRLGKYKRD
Sbjct: 1   MYMAYGWPQVIPLDQGLSPSEHKVVYFKLINRLLLIVSPTHFELWSSSQHRVRLGKYKRD 60

Query: 61  SESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISL 120
           S+S+QREGENLQAVWSPD KLIA++TSS YLHIFKVQ  +K I IGGKQPS L    ISL
Sbjct: 61  SDSLQREGENLQAVWSPDAKLIAILTSSFYLHIFKVQFLDKKIYIGGKQPSALCLATISL 120

Query: 121 VLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180
           +L+EQ+PFAEK LSVSNIV DNKHMLLGLSDG+LYS+SWKGEFYGAF+       S   +
Sbjct: 121 LLSEQVPFAEKDLSVSNIVCDNKHMLLGLSDGTLYSMSWKGEFYGAFQFESHPPASFDDS 180

Query: 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK 240
              H   NGL+          +H  P +S I  LELCL +RLLFVLYS+GQL+SCS+SKK
Sbjct: 181 QLPHPLENGLSPKGLPKVPTLNHILPRNSEIKHLELCLSLRLLFVLYSDGQLVSCSISKK 240

Query: 241 GLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300
           GLK  + IK +K L  GDAVCAS A EQ+ILAVGTRRG VELYDLAES SLIRTVSLYDW
Sbjct: 241 GLKQVDCIKAEKRLACGDAVCASAALEQEILAVGTRRGTVELYDLAESTSLIRTVSLYDW 300

Query: 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360
           G+SMDDTGPVSCIAWTPDNSAFAVGWK RGLTVWSVSGCRLMSTIRQI LSS+SSPI KP
Sbjct: 301 GFSMDDTGPVSCIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSVSSPIAKP 360

Query: 361 NQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVI 420
           N DCKYEPLM GTS+MQWDE+GYRLYAIEE SSER++ FSFGKCCL+RGVSG TY RQVI
Sbjct: 361 NHDCKYEPLMGGTSLMQWDEHGYRLYAIEERSSERIISFSFGKCCLSRGVSGTTYTRQVI 420

Query: 421 YGEDRLLVVQSEDTDELKILHLNLPV-----SYISQNWPVQHVAASKDGMFLAVAGLHGL 475
           YGEDRLL+VQSE+ DELK+LHL LPV     SYISQNWPVQ+VAAS+DGM+LAVAGLHGL
Sbjct: 421 YGEDRLLIVQSEEIDELKMLHLKLPVMCLIVSYISQNWPVQYVAASQDGMYLAVAGLHGL 480

Query: 476 ILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSS 535
           ILYDIR K+WRVFGD+TQEQKIQ KGLLWLGKI+VVCNYIDSSNTYELLFYPRYHLDQSS
Sbjct: 481 ILYDIRMKRWRVFGDVTQEQKIQCKGLLWLGKIVVVCNYIDSSNTYELLFYPRYHLDQSS 540

Query: 536 LLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIM 595
           LLCRK L AKPIVMDVY+DYILVTYRPFDVHIFHVKLFGELTPS  PDLQLS VRELSIM
Sbjct: 541 LLCRKPLFAKPIVMDVYQDYILVTYRPFDVHIFHVKLFGELTPSGNPDLQLSAVRELSIM 600

Query: 596 TAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRER 655
           TAKSHPAAMRFIPDQ+PRE    N++S+SSD    EPARCLILR+NGELSLLDLDDGRER
Sbjct: 601 TAKSHPAAMRFIPDQLPRELISKNYISSSSDSSTAEPARCLILRSNGELSLLDLDDGRER 660

Query: 656 ELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQV 693
            LTDSVELFWVTCGQ E+KT+LIEEVSWLDYG+RGMQV
Sbjct: 661 NLTDSVELFWVTCGQSEDKTNLIEEVSWLDYGHRGMQV 698

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441620|ref|XP_004138580.1| PREDICTED: protein RIC1 homolog [Cucumis sativus]

 Score = 1093 bits (2828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/693 (74%), Positives = 603/693 (87%), Gaps = 2/693 (0%)

Query: 1   MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRD 60
           MYMAYGWPQVIPLE  LCPSSQQIIY KV N LLL+ SP H+ELWSS+QH++RLGKYKRD
Sbjct: 1   MYMAYGWPQVIPLESSLCPSSQQIIYLKVVNRLLLVVSPTHLELWSSAQHRIRLGKYKRD 60

Query: 61  SESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISL 120
           S+SVQREGEN+QAVWSPDTKLIA++TSS +LHIFKVQ T++ I  GGKQPSGL F  +SL
Sbjct: 61  SDSVQREGENIQAVWSPDTKLIAILTSSFFLHIFKVQFTDRKIHFGGKQPSGLSFATVSL 120

Query: 121 VLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180
           VL+EQ+PFA + L+VSNIVSD++HM +GLS GSLYSISWKGEFYGAF++   + D +   
Sbjct: 121 VLSEQVPFAARDLTVSNIVSDSRHMFIGLSSGSLYSISWKGEFYGAFDIDLHTRDHNEIG 180

Query: 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK 240
           L      NGLA   ++    ++H     S II L+LCLP+R+LFVLYS+G+L+ CSVSKK
Sbjct: 181 LPSLPLDNGLAYKSSTRILKTNHDVK-QSVIIKLDLCLPLRMLFVLYSDGKLVQCSVSKK 239

Query: 241 GLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300
           GLK  + IK +   G+ DAVC S+AP QQILAVG+RRGVVELYDLA+SASL R+VSL+DW
Sbjct: 240 GLKYTDAIKAEFFFGTVDAVCTSVAPNQQILAVGSRRGVVELYDLADSASLFRSVSLHDW 299

Query: 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360
           GYS++DTG VSCIAWTPDNSAFAVGWK RGL VWS+SGCRLMSTIRQ+ LSS+SSP+VKP
Sbjct: 300 GYSVEDTGYVSCIAWTPDNSAFAVGWKLRGLAVWSISGCRLMSTIRQVGLSSVSSPMVKP 359

Query: 361 NQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVI 420
           NQDCKYEPL+ GTS++QWDEYGY+LYA+EE +SER+L FSFGKCCLNRGVS  T+ RQVI
Sbjct: 360 NQDCKYEPLIGGTSLIQWDEYGYKLYAVEERTSERILAFSFGKCCLNRGVSRTTHIRQVI 419

Query: 421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 480
           YG+DRLL+VQSED+DELK+L++NLPVSYISQNWP+QHVAAS+DGM+LAVAGLHGLILYDI
Sbjct: 420 YGDDRLLIVQSEDSDELKMLNVNLPVSYISQNWPIQHVAASEDGMYLAVAGLHGLILYDI 479

Query: 481 RQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK 540
           R KKWRVFGDITQEQKI+ +GLLWLGKIIVVCNY +SSN YELLF+PRYHLDQSSLLCRK
Sbjct: 480 RVKKWRVFGDITQEQKIKCEGLLWLGKIIVVCNYTESSNMYELLFFPRYHLDQSSLLCRK 539

Query: 541 SLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSH 600
            L  KP+VMDV+++YILVTYRPFDVHIFH+ L GELT S+TP LQLSTVRELSIMTAKSH
Sbjct: 540 PLPGKPVVMDVHQEYILVTYRPFDVHIFHLTLLGELTLSSTPKLQLSTVRELSIMTAKSH 599

Query: 601 PAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDS 660
           PA+MRFIP+Q P+E   N+H+S SS  L REPARCLILRANGELSLLDLDDGRERELTDS
Sbjct: 600 PASMRFIPEQFPKEGISNSHIS-SSPTLVREPARCLILRANGELSLLDLDDGRERELTDS 658

Query: 661 VELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQV 693
           VELFWVTCG  E+KT+LIEEVSWLDYG+RG+QV
Sbjct: 659 VELFWVTCGHSEDKTNLIEEVSWLDYGHRGLQV 691

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	696
TAIR|locus:2146589	1127	AT5G28350 "AT5G28350" [Arabido	0.992	0.613	0.701	1.2e-264
UNIPROTKB|Q4ADV7	1423	KIAA1432 "Protein RIC1 homolog	0.530	0.259	0.240	6.7e-28
FB|FBgn0028500	1429	Rich "RIC1 homolog" [Drosophil	0.343	0.167	0.244	2.6e-24
ASPGD|ASPL0000058751	1048	AN1283 [Emericella nidulans (t	0.491	0.326	0.250	5.7e-17
MGI|MGI:1924893	1422	C030046E11Rik "RIKEN cDNA C030	0.524	0.256	0.247	1.3e-14
POMBASE|SPAC1851.04c	1052	ric1 "Ypt/Rab-specific guanyl-	0.409	0.270	0.260	1.2e-12
UNIPROTKB|G4MP37	1118	MGG_05699 "Uncharacterized pro	0.393	0.245	0.219	2.9e-12
WB|WBGene00011071	1470	R06F6.8 [Caenorhabditis elegan	0.466	0.221	0.223	1.6e-10

TAIR|locus:2146589 AT5G28350 "AT5G28350" [Arabidopsis thaliana (taxid:3702)]

 Score = 2546 (901.3 bits), Expect = 1.2e-264, P = 1.2e-264
 Identities = 486/693 (70%), Positives = 567/693 (81%)

Query:     1 MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRD 60
             MYMAYGWPQVIPL  G CPSSQ+++Y K+   LLL+ SP H+ELW SSQ +VRLGKY RD
Sbjct:     1 MYMAYGWPQVIPLLPGSCPSSQRVVYLKLAGRLLLVVSPSHLELWGSSQQRVRLGKYMRD 60

Query:    61 SESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISL 120
              +SV+ EGENLQAVWSPD KLIAV+TSS +LHI+K++ T+K ++ G +QPS L F  ISL
Sbjct:    61 DKSVREEGENLQAVWSPDAKLIAVLTSSFFLHIYKIKFTDKRVKPGERQPSELCFATISL 120

Query:   121 VLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180
             +L+EQ+PFA K LSVSN V D+K MLLGLSDGSLYSISWKGEF GAF +    +DS+   
Sbjct:   121 LLSEQVPFAGKDLSVSNFVRDSKTMLLGLSDGSLYSISWKGEFGGAFSIGSHPSDSNDDR 180

Query:   181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK 240
             L  +   NGL S   S    SD KF  + AI+ LELC   +LLFVL S+GQL+ CSV+KK
Sbjct:   181 LLSYTLGNGLVSGVASPTLASDDKFSTNPAIVQLELCTRSKLLFVLNSDGQLVVCSVNKK 240

Query:   241 GLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300
             GLK  E I+ +K++G GDAVCAS+A EQQILAVGTR+G+VELYDL+ S SL+RTVSL+DW
Sbjct:   241 GLKYTESIRAEKKVG-GDAVCASVASEQQILAVGTRKGMVELYDLSHSISLLRTVSLHDW 299

Query:   301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360
             GYS D TGPV+ IAWTPDNSAFAVGWKSRGL VWSVSGCRLMST+RQI L+S SSP + P
Sbjct:   300 GYSADYTGPVNNIAWTPDNSAFAVGWKSRGLAVWSVSGCRLMSTVRQIGLTSTSSPKINP 359

Query:   361 NQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVI 420
              QDCKYEPLMSGTS +QWDEYGYRL+A EE S +R+L FSFGKCCLNRGVSG TY RQV+
Sbjct:   360 KQDCKYEPLMSGTSAIQWDEYGYRLFATEEASYDRILAFSFGKCCLNRGVSGKTYVRQVM 419

Query:   421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 480
             YG+DRLL+VQ+EDTDELK+LHL LPVSYISQNWPVQHVAAS+DG +LA AGLHGLILYDI
Sbjct:   420 YGDDRLLMVQAEDTDELKLLHLKLPVSYISQNWPVQHVAASEDGKYLAFAGLHGLILYDI 479

Query:   481 RQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK 540
             R KKWRVFGD++QEQ+I  KGLLWLGKI+V+CNYI++S TYELLFYPRYHLDQSSLLCRK
Sbjct:   480 RFKKWRVFGDVSQEQQIHCKGLLWLGKIVVICNYIEASETYELLFYPRYHLDQSSLLCRK 539

Query:   541 SLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSH 600
              LL KP+VMDVY+DYILV+Y PF +H++HVK++GELTPS+  DLQLSTVRELSIMTAKSH
Sbjct:   540 VLLGKPMVMDVYQDYILVSYLPFFIHVYHVKIYGELTPSSKADLQLSTVRELSIMTAKSH 599

Query:   601 PAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANXXXXXXXXXXXXXXXXTDS 660
             PAAM F+PDQ  RE  L+N  + SSD+  REP+RCLILR N                TDS
Sbjct:   600 PAAMGFVPDQHLREGELDND-NLSSDLSDREPSRCLILRGNGELSLLDLVDGRERELTDS 658

Query:   661 VELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQV 693
             VELFWVTCGQ EEKT+L+EEVSWLDYG+RGMQV
Sbjct:   659 VELFWVTCGQSEEKTNLVEEVSWLDYGHRGMQV 691

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q4ADV7 KIAA1432 "Protein RIC1 homolog" [Homo sapiens (taxid:9606)]

 Score = 207 (77.9 bits), Expect = 6.7e-28, Sum P(2) = 6.7e-28
 Identities = 101/420 (24%), Positives = 171/420 (40%)

Query:     1 MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRD 60
             MY   GWP+ +    G    +   +          + +   + +W S +  V +  YK  
Sbjct:     1 MYFLSGWPKRLLCPLGSPAEAPFHVQSDPQRAFFAVLAAARLSIWYS-RPSVLIVTYKEP 59

Query:    61 SESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT-------EKSIQIGGKQPSGL 113
             ++S  + G   QA W PD+ +IAV T++ Y+  F +  T       E     G  Q  G 
Sbjct:    60 AKSSTQFGSYKQAEWRPDSTMIAVSTANGYILFFHITSTRGDKYLYEPVYPKGSPQMKGT 119

Query:   114 FFIK-------ISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGA 166
                K       ++L + + L      +S+ +++ D   +L+  SDG L+ I W+G   G 
Sbjct:   120 PHFKEEQCAPALNLEMRKILDLQAPIMSLQSVLED---LLVATSDGLLHLIHWEGMTNGR 176

Query:   167 FELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226
               +    N  +V      F S  L S    G+F+      I      +E C  +    V+
Sbjct:   177 KAI----NLCTVP-----F-SVDLQS-SRVGSFLGFTDVHIRD----MEYCATLDGFAVV 221

Query:   227 YSNGQL-MSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDL 285
             +++G++     VS +    AE +         D  C ++  + +++A G   G V++Y +
Sbjct:   222 FNDGKVGFITPVSSRFT--AEQLHGVWPQDVVDGTCVAVNNKYRLMAFGCVSGSVQVYTI 279

Query:   286 AESAS---LIRTVSLYDWGYS--MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340
               S     L   + L    Y    + TG V  + W+PDNS   V W+  GL++WSV G +
Sbjct:   280 DNSTGAMLLSHKLELTAKQYPDIWNKTGAVKLMRWSPDNSVVIVTWEYGGLSLWSVFGAQ 339

Query:   341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFS 400
             L+ T+               +   K +PL   +  M W   GY L+ I    S+   I S
Sbjct:   340 LICTL--------GGDFAYRSDGTKKDPLKINS--MSWGAEGYHLWVISGFGSQNTEIES 389

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0028500 Rich "RIC1 homolog" [Drosophila melanogaster (taxid:7227)]

 Score = 183 (69.5 bits), Expect = 2.6e-24, Sum P(3) = 2.6e-24
 Identities = 63/258 (24%), Positives = 115/258 (44%)

Query:   442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQK-IQSK 500
             L LP++Y + NWP+++ A   DG+ LAVAG  GL  Y +  ++W++FG+ +QE+  + S 
Sbjct:   484 LQLPLNYAATNWPIRYAAIDPDGLHLAVAGRTGLAHYSLVTRRWKLFGNESQEKDFVVSG 543

Query:   501 GLLWLGKIIVVCNYIDSSNTYELLFYPR-YHLDQSSLLCRKSLLAKPIV-MDVYEDYILV 558
             GLLW    +V+  Y     T EL  YP    LD       K  +  P++ ++ +   ++V
Sbjct:   544 GLLWWHGFVVMGCYSLLDRTDELRCYPADCKLDNQ--YGHKLQVRAPVISLNSFRHQLIV 601

Query:   559 TYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIP-DQVPRECSL 617
                   V +F+      ++ ++   L +    EL + +   HPA +  +    +  E   
Sbjct:   602 LTADGIVSLFN------MSKNSAYALDIECAYELDVKSICIHPACIVSLTVTNLKNELKP 655

Query:   618 NNHVS--TSSDMLAREPARCLILRANXXXXXXXXXXXXXXXXTDSVELFWVTCGQLEEKT 675
                +    +  ++     R L+++ +                   VE+FW++   LE   
Sbjct:   656 QGQLGGDQAETIIVNVCGRILMIQRDAGEQVPNTLLATCLASC--VEVFWLS-HSLER-- 710

Query:   676 SLIEEVSWLDYGYRGMQV 693
               + +  WL  G  GM+V
Sbjct:   711 CAMRDCLWLYSGAHGMRV 728

GO:0003674 "molecular_function" evidence=ND

GO:0050808 "synapse organization" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0060078 "regulation of postsynaptic membrane potential" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0017112 "Rab guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0045467 "R7 cell development" evidence=IMP

GO:0035418 "protein localization to synapse" evidence=IMP

GO:0032851 "positive regulation of Rab GTPase activity" evidence=IGI

GO:0017137 "Rab GTPase binding" evidence=IPI

ASPGD|ASPL0000058751 AN1283 [Emericella nidulans (taxid:162425)]

 Score = 231 (86.4 bits), Expect = 5.7e-17, Sum P(2) = 5.7e-17
 Identities = 93/371 (25%), Positives = 155/371 (41%)

Query:   258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP 317
             +AV  ++     +L V    G V +Y   +    +          S+  TG ++ + ++P
Sbjct:   298 NAVNVTVNARFSLLTVSCANGNVLVYTAKDYLGNVPLSHKLQPPASLGTTGDLTFMCYSP 357

Query:   318 DNSAFAVGWKSRGLTVWSV---SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTS 374
             D      G++  G T WSV    G    S  R ++ S+    +   +  C    +  G+ 
Sbjct:   358 DGYCLFAGYE-HGWTTWSVFGKPGGNSFSIDRSLAESNGEDWLTGTSHGCW---IGGGSD 413

Query:   375 MMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIY-GEDRLLVVQSED 433
             ++       RL+ +E   S   L   +    L RG+   T    +IY G D   ++    
Sbjct:   414 IILTSRDDRRLWILETARS--ALTGCYSSANLARGLL-QTGTEVIIYRGHDLPDLITISG 470

Query:   434 TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQ 493
              D L   H   P +Y+   WP++  + S+DG ++A+AG  GL  Y +   +W+VF D T 
Sbjct:   471 KDSLWH-HAQYPPAYLHSQWPIRSSSVSQDGRYVAIAGKRGLAHYSVNSGRWKVFEDSTV 529

Query:   494 EQKIQSKG-LLWLGKIIVVCNYIDSSNTYELLFYPR-YHLDQSSLLCRKSLLAKPIVM-- 549
             E     +G + W G I++    ID   +YEL  + R   L+  S+L     L  P+V   
Sbjct:   530 ENSFAVRGGMCWYGHILIAA--IDRDGSYELCMFSRELPLNNHSVL-HVEYLPSPVVFIG 586

Query:   550 DVYEDYILV-TYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIP 608
                ED +LV TY      ++H      +  ST   + L  V +++       P  +R I 
Sbjct:   587 PSGEDSLLVYTYENI---LYHY-----IITSTQSRIGLVAVGQIAFNGIVRAPTRVRSIS 638

Query:   609 DQVPRECSLNN 619
               +P E  L N
Sbjct:   639 WVLPEE-QLRN 648

GO:0005829 "cytosol" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

MGI|MGI:1924893 C030046E11Rik "RIKEN cDNA C030046E11 gene" [Mus musculus (taxid:10090)]

 Score = 225 (84.3 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 104/420 (24%), Positives = 175/420 (41%)

Query:     1 MYMAYGWPQVIPLEQGLCPSSQQI-IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKR 59
             MY   GWP+ + L     P+   + +          + +P  + +W S +  V +  YK 
Sbjct:     1 MYFLSGWPKRL-LCAPRSPAEAPLHVQSDPRRAFFAVLAPARLSIWYS-RPSVLIVTYKE 58

Query:    60 DSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQ-------ITEKSIQIGGKQPSG 112
              ++S  + G   QA W PD+ +IAV T++ Y+  F +        + E     G  Q  G
Sbjct:    59 PAKSSTQFGSYKQAEWRPDSTMIAVSTANGYILFFHITSSRGDKYLYEPVYPKGSPQMKG 118

Query:   113 LFFIK-------ISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYG 165
             +   K       ++L + + L      +S+ +++ D   +L+  SDG L+ I W+G   G
Sbjct:   119 IPHFKEEHCAPALNLEMKKILDLQAPIMSLQSVLED---LLVATSDGLLHLIHWEGMTNG 175

Query:   166 AFELVHSSNDSSVAALSHHFPSN-GLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224
                +  S+   SV   S    S  G A V      + D           +E C  +    
Sbjct:   176 RKAINLSTVPFSVDLQSSRVGSFLGFADVH-----IKD-----------MEYCATLDGFA 219

Query:   225 VLYSNGQL-MSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELY 283
             V++++G++     VS +    AE +         D  C ++  + +++A G   G V++Y
Sbjct:   220 VVFNDGKVGFITPVSSRFT--AEQLHGVWPQDVIDGTCVAVNNKYRLMAFGCASGCVQVY 277

Query:   284 --DLAESASLI-RTVSLYDWGYS--MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338
               D    A L+   + L    Y    + TG V  I W+PDNSA  V W+  GL++WSV G
Sbjct:   278 TIDNTTGAMLLSHKLELTAKQYPDIWNKTGAVKLIRWSPDNSAVIVTWEYGGLSLWSVFG 337

Query:   339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLI 398
              +L+ T+               +   K +PL   +  M W   GY L+ I    S+   I
Sbjct:   338 AQLICTL--------GGDFAYRSDGTKKDPLKINS--MSWGAEGYHLWVISGLGSQHTQI 387

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

POMBASE|SPAC1851.04c ric1 "Ypt/Rab-specific guanyl-nucleotide exchange factor (GEF) subunit Ric1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 192 (72.6 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
 Identities = 84/323 (26%), Positives = 143/323 (44%)

Query:   310 VSCIAWTPDNSAF-AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISS--PIVKPNQDCKY 366
             +SC  W  D+S+F  +G K+   T     G  L + I   SL        + K N D +Y
Sbjct:   351 LSCGFWDRDSSSFYGLGSKNFSST-GEAEGTGLSTPIIAESLKENDEFFAMEKENVDIQY 409

Query:   367 EPLMSGTSMMQWDEYGYRLYAIEEGSS--ERVLIFSFGKCCLNRGVSGMTYARQVIYGE- 423
                     + Q D     LY+I +       + I  F K  +   VS +    QV   + 
Sbjct:   410 --------LSQNDNTNDVLYSITDSKQFISTIYILPFLKSTI---VSSVQSTLQVCGAQT 458

Query:   424 -DRLLVVQS-EDTDELKIL-------HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474
              DRL + +S E    +K          +  P  Y++  WP+++V+   DG  +A+AGLHG
Sbjct:   459 SDRLYISKSYEFCSSVKNNFGIDFWDQVEYPQPYVASEWPIRYVSIKDDGSLIAIAGLHG 518

Query:   475 LILYDIRQKKWRVFGDITQEQKIQ-SKGLLWLGKIIVVCNYIDSSNTYEL-LFYPRYHLD 532
             L +Y   +K W ++ D   EQ I  +  ++W  + ++    +  SN +EL L+  +  LD
Sbjct:   519 LAIYVCSKKTWFLYKDANMEQLISVTCPMIWCSQFLLA-GVVCESN-FELHLYKAKGPLD 576

Query:   533 QSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQ-LSTVRE 591
                 L + S  +  + M V ++Y LV Y   D  + H++   ++      +L  L++V  
Sbjct:   577 DRENLAKLSFTSTIVTMSVCDEYSLVVYTA-DNFLHHIRF--DINELGRLELDYLTSVNF 633

Query:   592 LSIMTAKSHPAAMRFIPDQVPRE 614
               I T    P+ +R I   +P++
Sbjct:   634 APIFTT---PSRVRSITLLLPKD 653

GO:0000139 "Golgi membrane" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=ISO

GO:0007264 "small GTPase mediated signal transduction" evidence=IGI

GO:0016021 "integral to membrane" evidence=IEA

GO:0030695 "GTPase regulator activity" evidence=NAS

GO:0032045 "guanyl-nucleotide exchange factor complex" evidence=ISO

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IGI

UNIPROTKB|G4MP37 MGG_05699 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 194 (73.4 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
 Identities = 66/301 (21%), Positives = 126/301 (41%)

Query:   270 ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329
             ++A+G   G + +Y + + A  + +  ++    S    G +  + ++PD      G++ +
Sbjct:   375 LIAIGCLDGQIRVYTVKDYAGNVPSSHVHTLPVSSSSAGRLMTLTYSPDGYCLFAGYE-K 433

Query:   330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIE 389
             G   WSV G  L             + I + N     E  + G     W      +  I 
Sbjct:   434 GWATWSVYGKALSHGFNN------DTAISQGNG----EAWLEGIRDAAWIGGASEMLIIG 483

Query:   390 EGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL-------HL 442
                 E V +    +  +          R V+     +++ +  D  +L  +       H 
Sbjct:   484 M-KHEAVWLLEMARSAVTGCYCSANLFRTVLQTTSSVMIYRGYDLPDLTTISAEPSLWHT 542

Query:   443 -NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKG 501
              N+P +Y+   WP++    S DG ++AV+G  GL  Y +   +W+ F +   E++ Q +G
Sbjct:   543 SNIPSTYLLNQWPIRCTVVSPDGRYVAVSGRRGLAHYSVNSGRWKTFANEEMEEEFQVRG 602

Query:   502 -LLWLGKIIVVCNYIDSSNTYELLFYPRYH-LDQSSLLCRKSLLAKPIVM--DVYEDYIL 557
              + W   I+V    ++ + TYEL  Y R   LD ++++ R  +   P+V+     ED +L
Sbjct:   603 GMCWYQNILVAA--VEVNRTYELRLYSREAVLDNTNIVHRVPM-PSPVVLLTPSGEDSLL 659

Query:   558 V 558
             V
Sbjct:   660 V 660

GO:0003674 "molecular_function" evidence=ND

WB|WBGene00011071 R06F6.8 [Caenorhabditis elegans (taxid:6239)]

 Score = 165 (63.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
 Identities = 83/371 (22%), Positives = 154/371 (41%)

Query:   258 DAVCASIAPEQQILAVGTRRGVVELYDLAE-SASLI---RTVSLYDWGYSMDDT-GPVSC 312
             DA C  +  +  ++  G + G V  Y++ E + SL+   R       G  + +  GPV  
Sbjct:   254 DATCCDVNHKFLLILFGCKNGDVCAYNIDELNGSLVQSFRVAPKVTNGPDLTNRLGPVHR 313

Query:   313 IAWTPDNSAFAVGWKSRGLTVWS-VSGC----RLMSTIRQISLSSISS--PIVKPNQDCK 365
             I      +A A G+   G  +WS +SG     RL++        S  +   +V+ +Q+ +
Sbjct:   314 I------TALANGY-GFG-AIWSPLSGAHALPRLVAVFTSFGAQSFCNLEGVVEEDQNDR 365

Query:   366 YEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYA-RQVIYGED 424
             Y       + ++W   G++L+    G+   +++  F +   +     M +  R V+  + 
Sbjct:   366 Y-------TAIEWGPEGFQLWL---GTENELMMQPFVRSA-SCSSPAMEHCDRAVLMSDS 414

Query:   425 RLLVVQSEDTDELKIL------HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILY 478
             ++L+  + D +           H+ +   Y+S NWP+++ +  ++   L VAG  G+   
Sbjct:   415 QVLISAARDREAEACAPHSVWDHITVTHEYLSSNWPLRYASTDRNYKHLVVAGDQGMAYC 474

Query:   479 DIRQKKWRVFGDITQEQKIQSKG--LLWLGKIIVVCNYIDSSNTYELLFYP-RYHLDQSS 535
              +  ++W++FG+ TQE+ +   G   +W   +I V      ++   L FYP    LD  S
Sbjct:   475 SLSNRRWKIFGNETQEKNLLVTGGVFIWNDDVIGVVGVAADTDKSHLSFYPISQRLD--S 532

Query:   536 LLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLST--VRELS 593
                    L    VM V  D +   +      I   KL   L        ++ST  V  + 
Sbjct:   533 RYASVVDLEHKSVMSVLRDDVCAVF-DISAQITLYKLTAHLETGRDAFTKVSTEIVTVIR 591

Query:   594 IMTAKSHPAAM 604
             I     HP  +
Sbjct:   592 INEIVPHPTCI 602

GO:0006974 "response to DNA damage stimulus" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_II0733 hypothetical protein (1123 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	696
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-05

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 48.2 bits (113), Expect = 1e-05
 Identities = 86/470 (18%), Positives = 154/470 (32%), Gaps = 55/470 (11%)

Query: 27  FKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT 86
               + L L +S   I L +     +              E       +SPD +L+   +
Sbjct: 25  LNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGS 84

Query: 87  SSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146
           S   + ++ +   EK I+                              ++    D   +L
Sbjct: 85  SDGTIKLWDLDNGEKLIKSLEGLHDSSVS------------------KLALSSPDGNSIL 126

Query: 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP 206
           L  S        W     G        +  SV +L+       LAS  +    +      
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL- 185

Query: 207 ISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGL----KLAEFIKIDKEL-GSGDAV 260
            +   +         +  + +S +G L+  S S  G      L+    +   L G  D+V
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245

Query: 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS 320
            +S +P+  +LA G+  G + L+DL  S+SL+RT+S +           V  +A++PD  
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS--------SSVLSVAFSPDGK 297

Query: 321 AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS-ISSPIVKPNQDCKYEPLMSGTSMMQWD 379
             A G     + +W +   +L+S++        +SS    P+            ++  WD
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357

Query: 380 -EYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438
              G  L  +E  S+   + FS     ++ G              D  + +    T  L 
Sbjct: 358 LRTGKPLKTLEGHSNVLSVSFSPDGRVVSSG------------STDGTVRLWDLSTGSLL 405

Query: 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV 487
                   +       V  +  S DG  LA       I L+D++     V
Sbjct: 406 -------RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSV 448

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	696
KOG2006	1023	consensus WD40 repeat protein [General function pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.96
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0286	343	consensus G-protein beta subunit [General function	99.96
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.96
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0645	312	consensus WD40 repeat protein [General function pr	99.95
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.95
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.94
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.94
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.94
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.94
KOG0266	456	consensus WD40 repeat-containing protein [General	99.94
KOG0296	399	consensus Angio-associated migratory cell protein	99.94
KOG0296	399	consensus Angio-associated migratory cell protein	99.93
KOG0266	456	consensus WD40 repeat-containing protein [General	99.93
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.93
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.93
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.93
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.92
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.92
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.92
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.92
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.92
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.92
PLN00181	793	protein SPA1-RELATED; Provisional	99.92
PLN00181	793	protein SPA1-RELATED; Provisional	99.92
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.92
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.92
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.91
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.91
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.91
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.9
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.9
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.9
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.9
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.89
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.89
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.89
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.89
PTZ00421	493	coronin; Provisional	99.89
KOG1539	910	consensus WD repeat protein [General function pred	99.88
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.88
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.88
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG0641	350	consensus WD40 repeat protein [General function pr	99.87
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.87
KOG2048	691	consensus WD40 repeat protein [General function pr	99.87
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.87
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.87
KOG0643	327	consensus Translation initiation factor 3, subunit	99.87
KOG0643	327	consensus Translation initiation factor 3, subunit	99.87
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.86
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.86
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.86
KOG2096	420	consensus WD40 repeat protein [General function pr	99.86
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.86
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.86
PTZ00420	568	coronin; Provisional	99.85
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.84
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.84
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.84
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.84
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.84
KOG2048	691	consensus WD40 repeat protein [General function pr	99.84
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.84
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.84
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.84
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.84
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.84
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.83
PTZ00420	568	coronin; Provisional	99.83
KOG0639	705	consensus Transducin-like enhancer of split protei	99.83
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.83
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.82
KOG1274	933	consensus WD40 repeat protein [General function pr	99.82
KOG0289	506	consensus mRNA splicing factor [General function p	99.82
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.82
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.82
PTZ00421	493	coronin; Provisional	99.82
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.82
KOG0641	350	consensus WD40 repeat protein [General function pr	99.82
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.82
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.81
KOG1539	910	consensus WD repeat protein [General function pred	99.81
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.79
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.79
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.79
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.79
KOG0289	506	consensus mRNA splicing factor [General function p	99.78
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.78
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.78
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.78
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.77
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.77
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.77
KOG1273	405	consensus WD40 repeat protein [General function pr	99.76
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.76
KOG1274	933	consensus WD40 repeat protein [General function pr	99.76
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.76
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.76
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.76
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.76
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.76
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.75
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.74
KOG0639	705	consensus Transducin-like enhancer of split protei	99.74
KOG2055	514	consensus WD40 repeat protein [General function pr	99.74
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.73
KOG0646	476	consensus WD40 repeat protein [General function pr	99.73
KOG0267	825	consensus Microtubule severing protein katanin p80	99.73
KOG0267	825	consensus Microtubule severing protein katanin p80	99.73
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.72
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.71
KOG2055	514	consensus WD40 repeat protein [General function pr	99.7
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.69
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.69
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.69
KOG0646	476	consensus WD40 repeat protein [General function pr	99.69
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.67
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.67
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.66
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.66
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.65
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.65
KOG1273	405	consensus WD40 repeat protein [General function pr	99.64
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.63
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.6
KOG4328	498	consensus WD40 protein [Function unknown]	99.6
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.59
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.58
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.58
KOG4328	498	consensus WD40 protein [Function unknown]	99.57
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.57
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.55
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.55
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.55
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.54
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.52
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.52
COG2319	466	FOG: WD40 repeat [General function prediction only	99.52
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.52
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.51
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.51
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.5
PRK11028	330	6-phosphogluconolactonase; Provisional	99.5
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.49
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.49
KOG1963	792	consensus WD40 repeat protein [General function pr	99.49
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.48
KOG0649	325	consensus WD40 repeat protein [General function pr	99.47
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.47
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.47
KOG1963	792	consensus WD40 repeat protein [General function pr	99.46
COG2319	466	FOG: WD40 repeat [General function prediction only	99.45
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.45
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.45
PRK11028	330	6-phosphogluconolactonase; Provisional	99.44
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.43
PRK01742	429	tolB translocation protein TolB; Provisional	99.43
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.41
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.4
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.39
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.39
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.39
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.38
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.37
KOG1188	376	consensus WD40 repeat protein [General function pr	99.36
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.35
KOG2139	445	consensus WD40 repeat protein [General function pr	99.35
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.35
KOG1188	376	consensus WD40 repeat protein [General function pr	99.34
KOG0649	325	consensus WD40 repeat protein [General function pr	99.3
KOG4227	609	consensus WD40 repeat protein [General function pr	99.3
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.3
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.29
PRK01742	429	tolB translocation protein TolB; Provisional	99.27
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.27
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.26
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.24
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.23
KOG1310	758	consensus WD40 repeat protein [General function pr	99.23
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.22
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.21
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.21
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.2
PRK03629	429	tolB translocation protein TolB; Provisional	99.19
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.17
KOG4227	609	consensus WD40 repeat protein [General function pr	99.16
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.16
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.16
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.12
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.11
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.11
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.1
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.07
PRK02889	427	tolB translocation protein TolB; Provisional	99.07
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.07
PRK05137	435	tolB translocation protein TolB; Provisional	99.07
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.07
KOG2139	445	consensus WD40 repeat protein [General function pr	99.04
PRK04922	433	tolB translocation protein TolB; Provisional	99.04
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.02
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.02
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.02
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	98.98
KOG2321	703	consensus WD40 repeat protein [General function pr	98.98
PRK03629	429	tolB translocation protein TolB; Provisional	98.96
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.96
PRK04922	433	tolB translocation protein TolB; Provisional	98.92
PRK02889	427	tolB translocation protein TolB; Provisional	98.92
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.91
PRK05137	435	tolB translocation protein TolB; Provisional	98.89
KOG2111	346	consensus Uncharacterized conserved protein, conta	98.85
KOG2315	566	consensus Predicted translation initiation factor	98.84
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.82
PRK04792	448	tolB translocation protein TolB; Provisional	98.81
KOG1310	758	consensus WD40 repeat protein [General function pr	98.8
KOG2321	703	consensus WD40 repeat protein [General function pr	98.77
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.75
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.75
KOG1334	559	consensus WD40 repeat protein [General function pr	98.75
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.74
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.73
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.71
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.71
KOG4547	541	consensus WD40 repeat-containing protein [General	98.7
PRK01029	428	tolB translocation protein TolB; Provisional	98.7
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.69
KOG1334	559	consensus WD40 repeat protein [General function pr	98.69
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.69
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.69
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.69
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.65
KOG4547	541	consensus WD40 repeat-containing protein [General	98.62
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.61
PRK01029	428	tolB translocation protein TolB; Provisional	98.58
PRK00178	430	tolB translocation protein TolB; Provisional	98.56
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.55
KOG2315	566	consensus Predicted translation initiation factor	98.53
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.52
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.52
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.47
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.45
PRK04792	448	tolB translocation protein TolB; Provisional	98.44
COG4946	668	Uncharacterized protein related to the periplasmic	98.42
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.41
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.41
PRK00178	430	tolB translocation protein TolB; Provisional	98.4
KOG2314	698	consensus Translation initiation factor 3, subunit	98.39
COG4946	668	Uncharacterized protein related to the periplasmic	98.39
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.33
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.33
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.32
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.3
KOG2314	698	consensus Translation initiation factor 3, subunit	98.29
PRK04043	419	tolB translocation protein TolB; Provisional	98.26
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.17
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.16
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.11
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.11
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.08
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.07
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.06
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.05
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.04
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.02
PRK04043	419	tolB translocation protein TolB; Provisional	98.0
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.99
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.96
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.94
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.93
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.92
KOG0280	339	consensus Uncharacterized conserved protein [Amino	97.91
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.86
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	97.85
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.83
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.79
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.74
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.72
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.65
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.65
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.63
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.57
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.57
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.56
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.56
KOG3621	726	consensus WD40 repeat-containing protein [General	97.56
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.56
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.34
KOG2695	425	consensus WD40 repeat protein [General function pr	97.34
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.29
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.29
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.21
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.19
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.12
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.08
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.08
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.07
KOG2695	425	consensus WD40 repeat protein [General function pr	97.07
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.04
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.91
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.87
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	96.82
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.77
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.76
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	96.68
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.59
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	96.51
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	96.5
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.5
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.47
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.31
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.24
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.17
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.15
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.1
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	96.1
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.08
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.01
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	96.01
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.0
KOG3621	726	consensus WD40 repeat-containing protein [General	95.76
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.69
KOG1008	783	consensus Uncharacterized conserved protein, conta	95.67
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	95.63
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	95.61
PRK02888	635	nitrous-oxide reductase; Validated	95.61
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.83
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	94.8
PRK02888	635	nitrous-oxide reductase; Validated	94.8
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	94.79
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	94.76
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.69
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	94.3
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.25
PRK13616	591	lipoprotein LpqB; Provisional	94.25
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.16
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	93.97
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.93
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	93.93
COG3391	381	Uncharacterized conserved protein [Function unknow	93.92
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.87
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.73
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.67
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.17
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	92.12
KOG2444	238	consensus WD40 repeat protein [General function pr	91.86
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	91.8
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	91.74
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	91.38
PRK13616	591	lipoprotein LpqB; Provisional	90.94
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	90.91
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	90.65
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	90.03
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	89.95
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	89.48
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	88.9
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	88.08
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	87.34
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	87.24
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	87.07
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	86.73
KOG2444	238	consensus WD40 repeat protein [General function pr	86.54
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	86.38
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	86.13
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	85.88
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	85.86
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	85.81
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	85.79
PRK10115	686	protease 2; Provisional	85.56
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	85.27
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	84.92
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	84.42
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	84.07
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	83.75
COG3391	381	Uncharacterized conserved protein [Function unknow	83.53
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	83.34
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	83.17
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	83.08
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	82.66
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	82.29
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	81.96
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	81.94
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	81.8
KOG2377	657	consensus Uncharacterized conserved protein [Funct	81.27
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	81.09
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	80.99
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	80.48
KOG2377	657	consensus Uncharacterized conserved protein [Funct	80.23

>KOG2006 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1e-40  Score=363.96  Aligned_cols=442  Identities=31%  Similarity=0.460  Sum_probs=324.5

Q ss_pred             eCCcEEEEeeccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCC
Q 005459          228 SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT  307 (696)
Q Consensus       228 ~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~  307 (696)
                      .||+......+....+.-.....+. .--++++|++++..++++|+|+..|.+.+|+.+.-..........++    .++
T Consensus       121 sD~q~a~~~~n~~~~~~t~~i~~~~-~l~~DAvc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~----~~t  195 (1023)
T KOG2006|consen  121 SDGQAAQLLLNHQGFKYTESIGAWK-PLGGDAVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDD----TLT  195 (1023)
T ss_pred             ccchhhhhhcccccchhhhhhhhhc-cccccceeeeccchhhhheecccccceeehhhhhhccceeeecccCc----ccc
Confidence            7777665544432222111111111 23378999999999999999999999999998763222222222122    245


Q ss_pred             CCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEE
Q 005459          308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYA  387 (696)
Q Consensus       308 g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~  387 (696)
                      -++.-+.|+|+++.++.++..|...+|+..++..+.+.............|+|......++-.+......|...+..++.
T Consensus       196 i~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~~~ms~v~~~~~ts~~~~~f~~~~~l~e~~~~s~~~~~q~~e~~~~L~~  275 (1023)
T KOG2006|consen  196 VPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGNILMLPVKKLELTSKVVLKFNPLIIMKGEPTFSKVGAIQWEEVGIVLFP  275 (1023)
T ss_pred             ccccccCcCCccceeeeeecccceEEecccccccccchhhhhccchhhhccCcceeeecccccCccchhhccceeeeeec
Confidence            58899999999999999999999999999999887776654344566677777765555666666678888888887776


Q ss_pred             EecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCC---CCcceeEEeecCeeeecCCCceEEEEEcCCC
Q 005459          388 IEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSED---TDELKILHLNLPVSYISQNWPVQHVAASKDG  464 (696)
Q Consensus       388 ~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~---~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG  464 (696)
                      ........+..+.....+.   ..++........++.+.++....+   .+..+|.++++|.+|...||||++++.++||
T Consensus       276 ~~~~~~~~~~~~~s~sc~~---~S~~~~~~~~l~~d~~~l~~~~~~~s~~~~~~w~~~~~P~~y~ssnwpiry~s~~~dg  352 (1023)
T KOG2006|consen  276 HGEQILTISDFKVSKSCLV---ESKTIVCRAQLMGDSHDLVSKATDVSITDIEKWDHLALPLTYTSSNWPIRYVSIDYDG  352 (1023)
T ss_pred             ccccccchhheeecccccc---cccceeechhhccchhhhhhhhccccccchhhhheeecccccccccCceeEEeecCCc
Confidence            6543322221111111111   133333344445555555444444   4556899999999999999999999999999


Q ss_pred             CEEEEEeCCccEEEEccCCceEecCCccceeeeEEE-eEeeeCcEEEEEEeecCCCeEEEEEeeCC-CCCccceeEEeec
Q 005459          465 MFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSK-GLLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSL  542 (696)
Q Consensus       465 ~~la~ag~dG~i~w~~~sg~w~~f~~~~~e~~~~v~-~~~w~~~~lv~~~~~~~~~~~~lr~y~~~-~l~~~~~~~~~~~  542 (696)
                      +++|+||..|.++|+..+++||.|+++.||+.+.|+ ||.|++++++.+|+.+.+..+++++|+++ ++|+. ..|....
T Consensus       353 ~~lavAgl~gla~y~~~~~~Wk~f~~~sqEq~i~vtg~liW~~~f~v~~~~~~~~~~~~L~fy~~~~~~dn~-~a~k~~~  431 (1023)
T KOG2006|consen  353 KHLAVAGLHGLARYSLSSKRWKLFGDESQEQNINVTGGLIWWDDFVVHGCVEEGNRTFELYFYPRDYNLDNN-LAHKSAA  431 (1023)
T ss_pred             cEEEEeecccceEEEeecceeecCCccchhhceecceeeEEecceEEEEEEeecCceeeeEecccccccchh-hccchhh
Confidence            999999999999999999999999999999999998 59999999999999999999999999999 77776 5577666


Q ss_pred             CCccEEEEccCCEEEEEEcCceEEEEEEEEecccCCCCCCeeEeEEEEEEeecccCCCCceEEEecCCCccccccCCCCC
Q 005459          543 LAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVS  622 (696)
Q Consensus       543 ~~~~l~~~~~~~~llv~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  622 (696)
                      ...+..+.+.++.+++.++|+...+|++..+.      ...+.+..+++++|+.+.+||+|||++|.++|......+ .+
T Consensus       432 ~~~~~d~v~~~~~livitad~~~~~~~~~~~s------~t~l~~~~~~~~~~~~i~thP~~ivs~t~t~~~l~~i~~-~~  504 (1023)
T KOG2006|consen  432 SAKVSDLVCVDYSLIVITADGKYQHWELWRNS------QTQLDLENVTEVSIVLINTHPACIVSLTVTSPSLANIGN-DN  504 (1023)
T ss_pred             hhhhhheeeecceeEEEEecceEEEEEeccch------hhccccceeeEEEEEeecCCCcEEEEeeccCccccccCc-cc
Confidence            66555667788999999999999999987643      456788999999999999999999999999998433221 23


Q ss_pred             CCccccccCCceEEEEEeCCeEEEEecCC-------CCeeEeccccceEEecCCCcccccCccceeeeeeeCCCC-----
Q 005459          623 TSSDMLAREPARCLILRANGELSLLDLDD-------GRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRG-----  690 (696)
Q Consensus       623 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-------~~~~~la~~ve~~w~~~~~~~~~~~~~~~~~~~~~~~~g-----  690 (696)
                      |.+    +   +++..+.+|++.+++...       ..+++||.+||+||++..+   +.....+..|+.||+.|     
T Consensus       505 l~~----~---~~~~~~~~n~i~~l~~~~~~~~~~~~~~~~la~~Ve~~~~~ss~---~~~~~~d~~Wl~~g~~~~~~~~  574 (1023)
T KOG2006|consen  505 LQF----Y---KSITVTFNNLIGRLIINSSLRDGALYQENKLASLVENFWLNSSF---EDQQVLDLHWLGDGANGCHMKN  574 (1023)
T ss_pred             hhH----h---hhhhhhhcchhheeehhhhccchhhhhhhhhhhhHHHeecCcHH---hhhhhhhceeeccCCCcccccc
Confidence            333    2   344444455555554432       2578999999999999322   22345688999999999     


Q ss_pred             cEEEe
Q 005459          691 MQVTN  695 (696)
Q Consensus       691 ~~vw~  695 (696)
                      |++|.
T Consensus       575 ~~g~~  579 (1023)
T KOG2006|consen  575 MDGCP  579 (1023)
T ss_pred             ccCCc
Confidence            88763

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.8e-36  Score=315.05  Aligned_cols=451  Identities=17%  Similarity=0.208  Sum_probs=310.9

Q ss_pred             CCCCCceEEEEEeCCcEEEEEccCeEEEeecCCcee-e--EEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEE
Q 005459           17 LCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKV-R--LGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHI   93 (696)
Q Consensus        17 ~~~~~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~-~--l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l   93 (696)
                      ..+.....|.|||||++||++..+-++||..  |+. .  ..-+.+...-+.++..++++.||-|++.|++++.|-..++
T Consensus        94 ~fk~~v~~i~fSPng~~fav~~gn~lqiw~~--P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl  171 (893)
T KOG0291|consen   94 NFKRGVGAIKFSPNGKFFAVGCGNLLQIWHA--PGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARL  171 (893)
T ss_pred             eecCccceEEECCCCcEEEEEecceeEEEec--CcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEE
Confidence            3456677799999999999999999999998  332 1  3334444444556788999999999999999999999999


Q ss_pred             EEEEecCcccccCCCCCCCceeeeeeEEEeeecccccc-ceeEEEe-eeCCCeEEEEecCCcEEEEecCCccc---cc--
Q 005459           94 FKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEK-GLSVSNI-VSDNKHMLLGLSDGSLYSISWKGEFY---GA--  166 (696)
Q Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~-~~~~~~llv~t~~g~i~~~~w~~~~~---~~--  166 (696)
                      |.++..++....                     .+.++ +..|.|+ ..+...|++-+.||.+..|..+....   ..  
T Consensus       172 ~~v~~~k~~~~~---------------------~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~k  230 (893)
T KOG0291|consen  172 FGVDGNKNLFTY---------------------ALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEK  230 (893)
T ss_pred             EEeccccccceE---------------------eccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccc
Confidence            999854431110                     01222 3334444 34556788889999887765541000   00  


Q ss_pred             -ee----e-ccCCCC-------------------CcccccccccCCCC-cccccCCCccccCCcCCCcccEEEEEEccCc
Q 005459          167 -FE----L-VHSSND-------------------SSVAALSHHFPSNG-LASVDTSGAFVSDHKFPISSAIIWLELCLPM  220 (696)
Q Consensus       167 -~~----~-~~~p~~-------------------~~~~~~~~~s~~~~-l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  220 (696)
                       .+    . ...+..                   +..+....|..... ++....++.+.- ...+.-..|.++..+..-
T Consensus       231 d~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~L-yelP~f~lih~LSis~~~  309 (893)
T KOG0291|consen  231 DEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGL-YELPDFNLIHSLSISDQK  309 (893)
T ss_pred             cccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEE-EecCCceEEEEeecccce
Confidence             00    0 000000                   00111111111111 111112211110 011222223333333222


Q ss_pred             ceEEEEEeCCcEEEEeecc-CCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEE
Q 005459          221 RLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTV  295 (696)
Q Consensus       221 ~~~~~~s~dG~~~~~~~~d-~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~  295 (696)
                      ...+++...|..++.++.. +.+-+|+.....-   .++|...+. +++||||++||+|+.||.|+|||... +-++.++
T Consensus       310 I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S-gfC~vTF  388 (893)
T KOG0291|consen  310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS-GFCFVTF  388 (893)
T ss_pred             eeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC-ceEEEEe
Confidence            3445666677777777654 4566676544321   268888776 99999999999999999999999988 8899999


Q ss_pred             eeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--
Q 005459          296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--  373 (696)
Q Consensus       296 ~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--  373 (696)
                      ..        |+..|+.+.|+.+|+.+++.+-||+|+.||+...+...++.....-..++++.+|.+    +.+..|.  
T Consensus       389 te--------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG----elV~AG~~d  456 (893)
T KOG0291|consen  389 TE--------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG----ELVCAGAQD  456 (893)
T ss_pred             cc--------CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC----CEEEeeccc
Confidence            98        999999999999999999999999999999999999999988656678899999998    8877776  


Q ss_pred             --eeEEEcCCCceEEEEecCCcceEEE--Eec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee
Q 005459          374 --SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY  448 (696)
Q Consensus       374 --~~~~W~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  448 (696)
                        .+.+|+.++|+++-++.||.++|..  |++ +..++|++.|.|+++|++......+                    .-
T Consensus       457 ~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v--------------------Et  516 (893)
T KOG0291|consen  457 SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV--------------------ET  516 (893)
T ss_pred             eEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee--------------------ee
Confidence              8999999999999999999999965  555 8899999999999999988764421                    22


Q ss_pred             ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE--------e---------cCCcc--ceeeeEEEeEeeeCcE
Q 005459          449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR--------V---------FGDIT--QEQKIQSKGLLWLGKI  508 (696)
Q Consensus       449 ~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~--------~---------f~~~~--~e~~~~v~~~~w~~~~  508 (696)
                      ..+...+..++|+|||+.||++.-||.+ +||.+.+.-.        +         +..+.  +.+.|+.......++.
T Consensus       517 l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~  596 (893)
T KOG0291|consen  517 LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKC  596 (893)
T ss_pred             EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCE
Confidence            3345568999999999999999999999 9999765321        0         11111  1122333344456788


Q ss_pred             EEEEEeecCCCeEEEEEeeCC
Q 005459          509 IVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       509 lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      ++++     +....|.+|+..
T Consensus       597 IlAg-----G~sn~iCiY~v~  612 (893)
T KOG0291|consen  597 ILAG-----GESNSICIYDVP  612 (893)
T ss_pred             EEec-----CCcccEEEEECc
Confidence            8887     445678999764

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.7e-38  Score=305.73  Aligned_cols=344  Identities=14%  Similarity=0.120  Sum_probs=282.1

Q ss_pred             ccCeEEEeecCCceeeEEEeecChHHHhhc-ccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceee
Q 005459           38 SPCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFI  116 (696)
Q Consensus        38 ~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~  116 (696)
                      +++.|.|-+..|.-..+....|...++..| +.+.++.|||||+.||+++.|.++|+||+.+.......           
T Consensus        85 te~~l~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~-----------  153 (480)
T KOG0271|consen   85 TEDVLTLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC-----------  153 (480)
T ss_pred             hhheeeEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-----------
Confidence            566677666533333445556777788766 56789999999999999999999999999866543222           


Q ss_pred             eeeEEEeeeccccccceeEEE--eeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCccccc
Q 005459          117 KISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD  194 (696)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~v~~--~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~  194 (696)
                                  +++..-|.|  ++||++.|+.|+.||.|.+  |+.++.....                          
T Consensus       154 ------------KgH~~WVlcvawsPDgk~iASG~~dg~I~l--wdpktg~~~g--------------------------  193 (480)
T KOG0271|consen  154 ------------KGHKNWVLCVAWSPDGKKIASGSKDGSIRL--WDPKTGQQIG--------------------------  193 (480)
T ss_pred             ------------cCCccEEEEEEECCCcchhhccccCCeEEE--ecCCCCCccc--------------------------
Confidence                        233334444  5789999999999999987  6765544321                          


Q ss_pred             CCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcE
Q 005459          195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQI  270 (696)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~  270 (696)
                             ..+.+|+..|+.++|.|.     -..|+.+.+++++.|+++++||...+.+.   .+|..+|. +.|--+ .+
T Consensus       194 -------~~l~gH~K~It~Lawep~-----hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gl  260 (480)
T KOG0271|consen  194 -------RALRGHKKWITALAWEPL-----HLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GL  260 (480)
T ss_pred             -------ccccCcccceeEEeeccc-----ccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ce
Confidence                   245577888999999883     34688899999999999999998876553   78998886 776544 58


Q ss_pred             EEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEEC-----------CCCC-------------------
Q 005459          271 LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT-----------PDNS-------------------  320 (696)
Q Consensus       271 la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~s-----------pdg~-------------------  320 (696)
                      |++|+.|++|++|+..+ +.+.+++++        |...|+.|+.|           |.|+                   
T Consensus       261 iySgS~DrtIkvw~a~d-G~~~r~lkG--------HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~  331 (480)
T KOG0271|consen  261 IYSGSQDRTIKVWRALD-GKLCRELKG--------HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV  331 (480)
T ss_pred             EEecCCCceEEEEEccc-hhHHHhhcc--------cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence            99999999999999998 899999999        99999999877           3344                   


Q ss_pred             ------eEEEEEcCCcEEEEEccC-CeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEec
Q 005459          321 ------AFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE  390 (696)
Q Consensus       321 ------~lasg~~Dg~v~vW~~~~-~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~  390 (696)
                            .|++|++|.++.+|+... .+++....+| ..-|+.+.||||+    .+++|++   ++++|+..+++.+.++.
T Consensus       332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~V~fSPd~----r~IASaSFDkSVkLW~g~tGk~lasfR  406 (480)
T KOG0271|consen  332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNHVSFSPDG----RYIASASFDKSVKLWDGRTGKFLASFR  406 (480)
T ss_pred             hccCcceeEEecCCceEEEecccccccchhhhhch-hhheeeEEECCCc----cEEEEeecccceeeeeCCCcchhhhhh
Confidence                  499999999999999864 4477777788 8889999999999    9999998   99999999999999999


Q ss_pred             CCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEE
Q 005459          391 GSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFL  467 (696)
Q Consensus       391 ~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~l  467 (696)
                      ||-..|+++.+   .+.+++++.|.++++|++.+...                    ...+-+|...|.++.|||||+.+
T Consensus       407 GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl--------------------~~DLpGh~DEVf~vDwspDG~rV  466 (480)
T KOG0271|consen  407 GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL--------------------KQDLPGHADEVFAVDWSPDGQRV  466 (480)
T ss_pred             hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee--------------------cccCCCCCceEEEEEecCCCcee
Confidence            99999988877   67899999999999999887654                    45667899999999999999999


Q ss_pred             EEEeCCccE-EEE
Q 005459          468 AVAGLHGLI-LYD  479 (696)
Q Consensus       468 a~ag~dG~i-~w~  479 (696)
                      |+||.|..+ +|.
T Consensus       467 ~sggkdkv~~lw~  479 (480)
T KOG0271|consen  467 ASGGKDKVLRLWR  479 (480)
T ss_pred             ecCCCceEEEeec
Confidence            999999999 884

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-36  Score=295.84  Aligned_cols=331  Identities=15%  Similarity=0.188  Sum_probs=250.7

Q ss_pred             cCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCe
Q 005459          204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGV  279 (696)
Q Consensus       204 ~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~  279 (696)
                      +.+|..+|.++          .|+|+|+.+++++.|.|+++||..+....   .+|...|- ++|+|||+.||+|+.||+
T Consensus       111 ~~GH~e~Vl~~----------~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~  180 (480)
T KOG0271|consen  111 IAGHGEAVLSV----------QFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGS  180 (480)
T ss_pred             cCCCCCcEEEE----------EecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCe
Confidence            44667777664          48999999999999999999998765433   78999886 999999999999999999


Q ss_pred             EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-----CCCeEEEEEcCCcEEEEEccCCeeEEEeeccccccee
Q 005459          280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-----DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSIS  354 (696)
Q Consensus       280 v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-----dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~  354 (696)
                      |++||..++....+.+.+        |+..|++|+|-|     ..++||+++.||.++|||+..+.++..+.+| +.+|+
T Consensus       181 I~lwdpktg~~~g~~l~g--------H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH-T~~VT  251 (480)
T KOG0271|consen  181 IRLWDPKTGQQIGRALRG--------HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH-TASVT  251 (480)
T ss_pred             EEEecCCCCCcccccccC--------cccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC-ccceE
Confidence            999999885666788888        999999999976     7889999999999999999999999999999 88899


Q ss_pred             cccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec--ceeeeeccCCCCceeeee----------
Q 005459          355 SPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQV----------  419 (696)
Q Consensus       355 ~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~----------  419 (696)
                      ++.+--+     ..+.+|+   ++++|+...+.+...+.+|...|..++.  .-.+-++..|.+-+--.-          
T Consensus       252 CvrwGG~-----gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~  326 (480)
T KOG0271|consen  252 CVRWGGE-----GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE  326 (480)
T ss_pred             EEEEcCC-----ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence            9999655     4677887   9999999999999999999988844433  111223333322111000          


Q ss_pred             -----eecCCeEEEEecCCCCcceeEEee---cCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEe-cC
Q 005459          420 -----IYGEDRLLVVQSEDTDELKILHLN---LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV-FG  489 (696)
Q Consensus       420 -----~~~~~~~~~~~~~~~~~~~w~~~~---~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~-f~  489 (696)
                           .....+.++...+|...+.|...+   ......+|+.-|..+.|||||+|+|+|+-|..+ +|+..+|+.-. |.
T Consensus       327 rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR  406 (480)
T KOG0271|consen  327 RYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR  406 (480)
T ss_pred             HHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh
Confidence                 000112233333333344443221   234567999999999999999999999999999 99999998432 21


Q ss_pred             CccceeeeEEEeEeeeCc--EEEEEEeecCCCeEEEEEeeCC--CCCccceeEEeecCCccEEEEccCCEEEEEEcCceE
Q 005459          490 DITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDV  565 (696)
Q Consensus       490 ~~~~e~~~~v~~~~w~~~--~lv~~~~~~~~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~  565 (696)
                      .    +--.|-.++|..+  .||.+     +.+..|++|+..  +|-.....|..++-.  +-.+++|..++.+..|..+
T Consensus       407 G----Hv~~VYqvawsaDsRLlVS~-----SkDsTLKvw~V~tkKl~~DLpGh~DEVf~--vDwspDG~rV~sggkdkv~  475 (480)
T KOG0271|consen  407 G----HVAAVYQVAWSADSRLLVSG-----SKDSTLKVWDVRTKKLKQDLPGHADEVFA--VDWSPDGQRVASGGKDKVL  475 (480)
T ss_pred             h----ccceeEEEEeccCccEEEEc-----CCCceEEEEEeeeeeecccCCCCCceEEE--EEecCCCceeecCCCceEE
Confidence            1    1123668999876  56655     667899999985  555544456665554  6677899999999999999


Q ss_pred             EEEE
Q 005459          566 HIFH  569 (696)
Q Consensus       566 ~l~~  569 (696)
                      +||.
T Consensus       476 ~lw~  479 (480)
T KOG0271|consen  476 RLWR  479 (480)
T ss_pred             Eeec
Confidence            8885

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.5e-31  Score=281.25  Aligned_cols=458  Identities=17%  Similarity=0.188  Sum_probs=317.2

Q ss_pred             CCceEEEEEeCCcEEEEEccCeEE-EeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459           20 SSQQIIYFKVNNGLLLIASPCHIE-LWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI   98 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~~~~~v~-iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~   98 (696)
                      ....-++.||+|.+|.++.++... +=+. ..+..+..+.       -.+++-++.|||||+.+|++.. +.+.||....
T Consensus        56 ~NI~~ialSp~g~lllavdE~g~~~lvs~-~~r~Vlh~f~-------fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~  126 (893)
T KOG0291|consen   56 YNITRIALSPDGTLLLAVDERGRALLVSL-LSRSVLHRFN-------FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPG  126 (893)
T ss_pred             CceEEEEeCCCceEEEEEcCCCcEEEEec-ccceeeEEEe-------ecCccceEEECCCCcEEEEEec-ceeEEEecCc
Confidence            456668999999999888655333 3333 1233332221       1356679999999999999864 4799999864


Q ss_pred             cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--eeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCC
Q 005459           99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS  176 (696)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~  176 (696)
                      ..+..+.+               +.......++...+.++  +.|...+++|+.|-..+++.-++..+.           
T Consensus       127 ~~~~~~~p---------------Fvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~-----------  180 (893)
T KOG0291|consen  127 EIKNEFNP---------------FVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL-----------  180 (893)
T ss_pred             chhcccCc---------------ceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccccc-----------
Confidence            33211110               11112233444455555  456677888899999888765544331           


Q ss_pred             cccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeee--------
Q 005459          177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI--------  248 (696)
Q Consensus       177 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~--------  248 (696)
                                             ....+.+|+.+|...-|.........++.||.+++..........+..+        
T Consensus       181 -----------------------~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d  237 (893)
T KOG0291|consen  181 -----------------------FTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDD  237 (893)
T ss_pred             -----------------------ceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccc
Confidence                                   1124557788888877777777777788888888877763222222210        


Q ss_pred             -----ecce------e---------cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC------
Q 005459          249 -----KIDK------E---------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY------  302 (696)
Q Consensus       249 -----~~~~------~---------~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~------  302 (696)
                           .++.      +         ....+.++++|++.-++||+|-.+|...+|.+.+ ..+++.++..+.+.      
T Consensus       238 ~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~-f~lih~LSis~~~I~t~~~N  316 (893)
T KOG0291|consen  238 EEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD-FNLIHSLSISDQKILTVSFN  316 (893)
T ss_pred             ccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC-ceEEEEeecccceeeEEEec
Confidence                 0000      0         1123455699999999999999999999999877 55555444332110      


Q ss_pred             -----------------------------CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccce
Q 005459          303 -----------------------------SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI  353 (696)
Q Consensus       303 -----------------------------~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v  353 (696)
                                                   -.+|...++++++||||+++|+|++||.|||||...+-|+.|+.+| ++.|
T Consensus       317 ~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH-ts~V  395 (893)
T KOG0291|consen  317 STGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH-TSGV  395 (893)
T ss_pred             ccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC-CCce
Confidence                                         1269999999999999999999999999999999999999999999 8889


Q ss_pred             ecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcc-eE--EEEec-ceeeeeccCCC-CceeeeeeecCCe
Q 005459          354 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE-RV--LIFSF-GKCCLNRGVSG-MTYARQVIYGEDR  425 (696)
Q Consensus       354 ~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~-~v--~~~~~-~~~~~s~~~d~-~~~~w~~~~~~~~  425 (696)
                      +.+.|+..+    +.+++.+   +++.||...|+.+.++..... +.  ++.++ +..+..|+.|. .+.+|++.+|.. 
T Consensus       396 t~v~f~~~g----~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql-  470 (893)
T KOG0291|consen  396 TAVQFTARG----NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL-  470 (893)
T ss_pred             EEEEEEecC----CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee-
Confidence            999999998    8888877   999999999999999865322 22  66666 66677777776 678999887765 


Q ss_pred             EEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEee
Q 005459          426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW  504 (696)
Q Consensus       426 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w  504 (696)
                                         ...+.||.+||.+++|+|+|..||+|+-|.+| +||+-+.. ...  ++-+..-.+.++.+
T Consensus       471 -------------------lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~-~~v--Etl~i~sdvl~vsf  528 (893)
T KOG0291|consen  471 -------------------LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS-GTV--ETLEIRSDVLAVSF  528 (893)
T ss_pred             -------------------eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC-cee--eeEeeccceeEEEE
Confidence                               66788999999999999999999999999999 99986542 110  01111112556666


Q ss_pred             e--CcEEEEEEeecCCCeEEEEEeeCC---CC---C------cc-----ce-----eEEeecCCccEEEEccCCEEEEEE
Q 005459          505 L--GKIIVVCNYIDSSNTYELLFYPRY---HL---D------QS-----SL-----LCRKSLLAKPIVMDVYEDYILVTY  560 (696)
Q Consensus       505 ~--~~~lv~~~~~~~~~~~~lr~y~~~---~l---~------~~-----~~-----~~~~~~~~~~l~~~~~~~~llv~~  560 (696)
                      .  ++.|.++     .-+++|-||+..   ++   +      ..     ..     ...+.+.  .+..+++|..+|.++
T Consensus       529 rPdG~elaVa-----TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ft--ti~ySaDG~~IlAgG  601 (893)
T KOG0291|consen  529 RPDGKELAVA-----TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFT--TICYSADGKCILAGG  601 (893)
T ss_pred             cCCCCeEEEE-----EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceE--EEEEcCCCCEEEecC
Confidence            6  6677776     344788888853   11   0      00     00     0011222  367788999999999


Q ss_pred             cCceEEEEEEE
Q 005459          561 RPFDVHIFHVK  571 (696)
Q Consensus       561 ~d~~~~l~~~~  571 (696)
                      ..+.|+||++.
T Consensus       602 ~sn~iCiY~v~  612 (893)
T KOG0291|consen  602 ESNSICIYDVP  612 (893)
T ss_pred             CcccEEEEECc
Confidence            99999999864

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.2e-34  Score=285.03  Aligned_cols=275  Identities=14%  Similarity=0.137  Sum_probs=226.5

Q ss_pred             cccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eee--CC
Q 005459           67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVS--DN  142 (696)
Q Consensus        67 ~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~--~~  142 (696)
                      .+++..+.||+||+.||+++-+|.+++|+....+....+.+|.                       ..|.+  |.|  ++
T Consensus       175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~-----------------------~~v~~~~fhP~~~~  231 (459)
T KOG0272|consen  175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHT-----------------------SRVGAAVFHPVDSD  231 (459)
T ss_pred             CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccc-----------------------cceeeEEEccCCCc
Confidence            4678899999999999999999999999997553322232332                       22222  223  25


Q ss_pred             CeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcce
Q 005459          143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL  222 (696)
Q Consensus       143 ~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  222 (696)
                      ..|+.|+.||++.+|..+.+....                                    .+.+|...|..         
T Consensus       232 ~~lat~s~Dgtvklw~~~~e~~l~------------------------------------~l~gH~~RVs~---------  266 (459)
T KOG0272|consen  232 LNLATASADGTVKLWKLSQETPLQ------------------------------------DLEGHLARVSR---------  266 (459)
T ss_pred             cceeeeccCCceeeeccCCCcchh------------------------------------hhhcchhhhee---------
Confidence            689999999999997666542210                                    12234444544         


Q ss_pred             EEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeec
Q 005459          223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY  298 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~  298 (696)
                       ++|.|+|+++.+++.|.+-++||+.+...+   .||...+. ++|+|||.++++|+.|..-||||+++ +..+..+.+ 
T Consensus       267 -VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~g-  343 (459)
T KOG0272|consen  267 -VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-GRCIMFLAG-  343 (459)
T ss_pred             -eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc-CcEEEEecc-
Confidence             458999999999999999999999987654   78999998 99999999999999999999999999 899999999 


Q ss_pred             cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEE
Q 005459          299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQW  378 (696)
Q Consensus       299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W  378 (696)
                             |..+|.+|+|||+|+.||+|+.|++++|||+....++.++.+| .+-|+.+.|+|..                
T Consensus       344 -------H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH-~nlVS~Vk~~p~~----------------  399 (459)
T KOG0272|consen  344 -------HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH-SNLVSQVKYSPQE----------------  399 (459)
T ss_pred             -------cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc-cchhhheEecccC----------------
Confidence                   9999999999999999999999999999999999999999988 6777777777743                


Q ss_pred             cCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEE
Q 005459          379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV  458 (696)
Q Consensus       379 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v  458 (696)
                                             +..++|+++|+++++|.-.....                    ..++.||...|-++
T Consensus       400 -----------------------g~fL~TasyD~t~kiWs~~~~~~--------------------~ksLaGHe~kV~s~  436 (459)
T KOG0272|consen  400 -----------------------GYFLVTASYDNTVKIWSTRTWSP--------------------LKSLAGHEGKVISL  436 (459)
T ss_pred             -----------------------CeEEEEcccCcceeeecCCCccc--------------------chhhcCCccceEEE
Confidence                                   35678899999999998554433                    56788999999999


Q ss_pred             EEcCCCCEEEEEeCCccE-EEE
Q 005459          459 AASKDGMFLAVAGLHGLI-LYD  479 (696)
Q Consensus       459 a~s~dG~~la~ag~dG~i-~w~  479 (696)
                      .+|+||+++++++.|.++ +|.
T Consensus       437 Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  437 DISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EeccCCceEEEeccCceeeecc
Confidence            999999999999999999 995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=7.3e-33  Score=274.27  Aligned_cols=271  Identities=15%  Similarity=0.243  Sum_probs=233.2

Q ss_pred             CCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC--CCeEEEEEcCCcE
Q 005459          255 GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGL  331 (696)
Q Consensus       255 ~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg~v  331 (696)
                      +-+.++. +.||+|++.||+|+.+|.++||+..+ ...+.++.+        |++.|.++.|+|.  +..||||+.||++
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~-~~~~~~l~g--------H~~~v~~~~fhP~~~~~~lat~s~Dgtv  243 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ-CNLLQTLRG--------HTSRVGAAVFHPVDSDLNLATASADGTV  243 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCC-cceeEEEec--------cccceeeEEEccCCCccceeeeccCCce
Confidence            4456677 99999999999999999999999998 788999999        9999999999996  7799999999999


Q ss_pred             EEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceee
Q 005459          332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCC  405 (696)
Q Consensus       332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~  405 (696)
                      ++|++.+..++..|.+| ...|..++|+|+|    +++.|++   +-++||++++..+...+||...|  ++|.+ |..+
T Consensus       244 klw~~~~e~~l~~l~gH-~~RVs~VafHPsG----~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~  318 (459)
T KOG0272|consen  244 KLWKLSQETPLQDLEGH-LARVSRVAFHPSG----KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLA  318 (459)
T ss_pred             eeeccCCCcchhhhhcc-hhhheeeeecCCC----ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCcee
Confidence            99999999999999999 6889999999999    9999998   89999999999988889999999  45555 8889


Q ss_pred             eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       406 ~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                      +||+.|..-++||+.++..                    ...+.+|..+|.+++|||+|..||+||.|+++ +||++..+
T Consensus       319 ~tGGlD~~~RvWDlRtgr~--------------------im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~  378 (459)
T KOG0272|consen  319 ATGGLDSLGRVWDLRTGRC--------------------IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS  378 (459)
T ss_pred             eccCccchhheeecccCcE--------------------EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc
Confidence            9999999999999999987                    34566899999999999999999999999999 99998765


Q ss_pred             eEecCCccceeeeEEEeEeee---CcEEEEEEeecCCCeEEEEEeeCC--CCCccceeEEeecCCccEEEEccCCEEEEE
Q 005459          485 WRVFGDITQEQKIQSKGLLWL---GKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVT  559 (696)
Q Consensus       485 w~~f~~~~~e~~~~v~~~~w~---~~~lv~~~~~~~~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~llv~  559 (696)
                      - ++....|.+  .|..+.+.   +.+|++|+|     +..+++|+..  .+..+...|..++-+  +-++++++.++++
T Consensus       379 ~-ly~ipAH~n--lVS~Vk~~p~~g~fL~Tasy-----D~t~kiWs~~~~~~~ksLaGHe~kV~s--~Dis~d~~~i~t~  448 (459)
T KOG0272|consen  379 E-LYTIPAHSN--LVSQVKYSPQEGYFLVTASY-----DNTVKIWSTRTWSPLKSLAGHEGKVIS--LDISPDSQAIATS  448 (459)
T ss_pred             c-ceecccccc--hhhheEecccCCeEEEEccc-----CcceeeecCCCcccchhhcCCccceEE--EEeccCCceEEEe
Confidence            3 444444433  25566664   578888855     3689999987  555666677776665  6677889999999


Q ss_pred             EcCceEEEEE
Q 005459          560 YRPFDVHIFH  569 (696)
Q Consensus       560 ~~d~~~~l~~  569 (696)
                      +.|.+++||.
T Consensus       449 s~DRT~KLW~  458 (459)
T KOG0272|consen  449 SFDRTIKLWR  458 (459)
T ss_pred             ccCceeeecc
Confidence            9999999994

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.7e-29  Score=253.96  Aligned_cols=458  Identities=13%  Similarity=0.150  Sum_probs=309.9

Q ss_pred             CCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecC--cEEEEEEE
Q 005459           20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS--LYLHIFKV   96 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~d--g~l~l~~l   96 (696)
                      ...-+..|||.|.++|++ ..++|+||+..+... +-+..-..    -.|++.++.|++||++|++....  .+.++|-.
T Consensus        60 ~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h-iLKnef~v----~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~  134 (603)
T KOG0318|consen   60 HQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH-ILKNEFQV----LAGPIKDISWDFDSKRIAAVGEGRERFGHVFLW  134 (603)
T ss_pred             ceeEEEEeCCCceEEeecCCcCcEEEEeccCcce-eeeeeeee----cccccccceeCCCCcEEEEEecCccceeEEEEe
Confidence            345567899999999988 467999999964322 22221111    13899999999999998886532  23344444


Q ss_pred             EecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eeeC-CCeEEEEecCCcEEEEecCCccccceeeccCC
Q 005459           97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSS  173 (696)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~-~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p  173 (696)
                      ++++..-.+                       .++...+.+  |.+. +.+++.+++|+.+..+  +|.   .++.+   
T Consensus       135 DSG~SvGei-----------------------~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ff--eGP---PFKFk---  183 (603)
T KOG0318|consen  135 DSGNSVGEI-----------------------TGHSRRINSVDFKPSRPFRIATGSDDNTVAFF--EGP---PFKFK---  183 (603)
T ss_pred             cCCCcccee-----------------------eccceeEeeeeccCCCceEEEeccCCCeEEEe--eCC---Ceeee---
Confidence            433321111                       122222322  2222 4789999999998775  332   11110   


Q ss_pred             CCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee
Q 005459          174 NDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE  253 (696)
Q Consensus       174 ~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~  253 (696)
                                                  .....|...|.++.          ++|||..+++.+.|+++.++|..++++.
T Consensus       184 ----------------------------~s~r~HskFV~~VR----------ysPDG~~Fat~gsDgki~iyDGktge~v  225 (603)
T KOG0318|consen  184 ----------------------------SSFREHSKFVNCVR----------YSPDGSRFATAGSDGKIYIYDGKTGEKV  225 (603)
T ss_pred             ----------------------------ecccccccceeeEE----------ECCCCCeEEEecCCccEEEEcCCCccEE
Confidence                                        12234455676666          6778888888888888888888877654


Q ss_pred             ------cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE
Q 005459          254 ------LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW  326 (696)
Q Consensus       254 ------~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~  326 (696)
                            .+|.+.+. ++|+||++.+++.+.|.++||||+.+ .++++++.....     -...-..+-|-  +..|++-+
T Consensus       226 g~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~-~slv~t~~~~~~-----v~dqqvG~lWq--kd~lItVS  297 (603)
T KOG0318|consen  226 GELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST-NSLVSTWPMGST-----VEDQQVGCLWQ--KDHLITVS  297 (603)
T ss_pred             EEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec-cceEEEeecCCc-----hhceEEEEEEe--CCeEEEEE
Confidence                  47999998 99999999999999999999999998 788888875110     01223334465  56899999


Q ss_pred             cCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEE-ecCCcceEEEEec-
Q 005459          327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI-EEGSSERVLIFSF-  401 (696)
Q Consensus       327 ~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~-~~~~~~~v~~~~~-  401 (696)
                      .+|++...+...+....++.|| ...|+++..+|++    ..+.+|+   .+..|+...+..-.. .++|...|..+.. 
T Consensus       298 l~G~in~ln~~d~~~~~~i~GH-nK~ITaLtv~~d~----~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~  372 (603)
T KOG0318|consen  298 LSGTINYLNPSDPSVLKVISGH-NKSITALTVSPDG----KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS  372 (603)
T ss_pred             cCcEEEEecccCCChhheeccc-ccceeEEEEcCCC----CEEEeeccCceEEEEecCCccccccccccccceEEEEeec
Confidence            9999999999999999999999 7789999999999    8999998   899999987765444 3678999988877 


Q ss_pred             -ceeeeeccCCCCceeeeeeecCC---e--------EEEEecCCCCcce---eEEeecCeee-----ecCCCceEEEEEc
Q 005459          402 -GKCCLNRGVSGMTYARQVIYGED---R--------LLVVQSEDTDELK---ILHLNLPVSY-----ISQNWPVQHVAAS  461 (696)
Q Consensus       402 -~~~~~s~~~d~~~~~w~~~~~~~---~--------~~~~~~~~~~~~~---w~~~~~~~~~-----~~~~~~I~~va~s  461 (696)
                       ...+.+.+.|.+++.-++.....   .        .-+....+.....   -..+.+.+..     ..-.....++|++
T Consensus       373 ~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~  452 (603)
T KOG0318|consen  373 ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS  452 (603)
T ss_pred             CCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc
Confidence             47899999999998876643321   1        0111111100000   0111111100     0112246789999


Q ss_pred             CCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCC-C--CCccc
Q 005459          462 KDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY-H--LDQSS  535 (696)
Q Consensus       462 ~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~-~--l~~~~  535 (696)
                      ||++++|+||.||.+ +|.+..+..+.+.. ..+....++.+...+  .+|+++     +-..++-+|++. .  -.+..
T Consensus       453 ~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~-~~~h~a~iT~vaySpd~~yla~~-----Da~rkvv~yd~~s~~~~~~~w  526 (603)
T KOG0318|consen  453 PDGSEVAVGGQDGKVHVYSLSGDELKEEAK-LLEHRAAITDVAYSPDGAYLAAG-----DASRKVVLYDVASREVKTNRW  526 (603)
T ss_pred             CCCCEEEEecccceEEEEEecCCcccceee-eecccCCceEEEECCCCcEEEEe-----ccCCcEEEEEcccCceeccee
Confidence            999999999999999 99998765332211 112223356677754  466665     455789999986 2  22334


Q ss_pred             eeEEeecCCccEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459          536 LLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL  572 (696)
Q Consensus       536 ~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~  572 (696)
                      ..|+-++..  ++-+|+..++++++-|..|.+|.++.
T Consensus       527 ~FHtakI~~--~aWsP~n~~vATGSlDt~Viiysv~k  561 (603)
T KOG0318|consen  527 AFHTAKINC--VAWSPNNKLVATGSLDTNVIIYSVKK  561 (603)
T ss_pred             eeeeeeEEE--EEeCCCceEEEeccccceEEEEEccC
Confidence            557777766  78889888888899899999998763

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.1e-30  Score=260.92  Aligned_cols=376  Identities=15%  Similarity=0.208  Sum_probs=250.3

Q ss_pred             eEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCc
Q 005459           23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK  101 (696)
Q Consensus        23 ~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~  101 (696)
                      .-|+|||||.+||++ +|+++.|+|. +.+..++.+..   +-.+.|.+.++.||||++++++++.|.+++|||+.+.+.
T Consensus       194 ~~VRysPDG~~Fat~gsDgki~iyDG-ktge~vg~l~~---~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl  269 (603)
T KOG0318|consen  194 NCVRYSPDGSRFATAGSDGKIYIYDG-KTGEKVGELED---SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL  269 (603)
T ss_pred             eeEEECCCCCeEEEecCCccEEEEcC-CCccEEEEecC---CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence            338899999999998 6889999999 58898888764   234679999999999999999999999999999987753


Q ss_pred             ccc-cCCCCCCCceeeee-------eEEEeee------------ccccccceeEEEe--eeCCCeEEEEecCCcEEEEec
Q 005459          102 SIQ-IGGKQPSGLFFIKI-------SLVLNEQ------------LPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISW  159 (696)
Q Consensus       102 ~~~-~~~~~~~~~~~~~~-------~l~~~~~------------~~~~~~~~~v~~~--~~~~~~llv~t~~g~i~~~~w  159 (696)
                      ... ..+...+++++.++       .+++.+.            ..+.++...|+++  .++++.|+.|+.||.|..  |
T Consensus       270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~--W  347 (603)
T KOG0318|consen  270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINS--W  347 (603)
T ss_pred             EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEE--E
Confidence            222 22223333333221       1111111            1234666667665  567899999999999865  7


Q ss_pred             CCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCC---cccEEEEEEccCcceEEEEEeCCcEEEEe
Q 005459          160 KGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI---SSAIIWLELCLPMRLLFVLYSNGQLMSCS  236 (696)
Q Consensus       160 ~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~s~dG~~~~~~  236 (696)
                      +........+...++..+ +..+.-+..+++.+.+-++.++.+.....   +..+..+.  .... .++..+||..++.+
T Consensus       348 ~~~~g~~~~~~g~~h~nq-I~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg--~QP~-~lav~~d~~~avv~  423 (603)
T KOG0318|consen  348 DSGSGTSDRLAGKGHTNQ-IKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLG--SQPK-GLAVLSDGGTAVVA  423 (603)
T ss_pred             ecCCccccccccccccce-EEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecC--CCce-eEEEcCCCCEEEEE
Confidence            655443332222222222 22222222223333333333333222111   11111221  1122 45566776655555


Q ss_pred             eccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEEC
Q 005459          237 VSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT  316 (696)
Q Consensus       237 ~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~s  316 (696)
                      ..+.-+-+-+........---.+.++|++|+++.+|+|++||.|+||.+.. .++.......      .|+++|++++||
T Consensus       424 ~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g-~~l~ee~~~~------~h~a~iT~vayS  496 (603)
T KOG0318|consen  424 CISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG-DELKEEAKLL------EHRAAITDVAYS  496 (603)
T ss_pred             ecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC-Ccccceeeee------cccCCceEEEEC
Confidence            444322222222111111113456699999999999999999999999986 4443332222      299999999999


Q ss_pred             CCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCce-EEEEecCC
Q 005459          317 PDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR-LYAIEEGS  392 (696)
Q Consensus       317 pdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~-l~~~~~~~  392 (696)
                      |||.+||+|...+.+-+||+.++.....--..|...|.+++|+|+.    +.+++|+   .+.+|+.+... .+.....|
T Consensus       497 pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n----~~vATGSlDt~Viiysv~kP~~~i~iknAH  572 (603)
T KOG0318|consen  497 PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN----KLVATGSLDTNVIIYSVKKPAKHIIIKNAH  572 (603)
T ss_pred             CCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc----eEEEeccccceEEEEEccChhhheEecccc
Confidence            9999999999999999999999876333334458899999999998    9999998   89999987532 34455678


Q ss_pred             cceEEEEec--ceeeeeccCCCCceeeee
Q 005459          393 SERVLIFSF--GKCCLNRGVSGMTYARQV  419 (696)
Q Consensus       393 ~~~v~~~~~--~~~~~s~~~d~~~~~w~~  419 (696)
                      ...|..+.+  ...+++.+.|..+++|.+
T Consensus       573 ~~gVn~v~wlde~tvvSsG~Da~iK~W~v  601 (603)
T KOG0318|consen  573 LGGVNSVAWLDESTVVSSGQDANIKVWNV  601 (603)
T ss_pred             ccCceeEEEecCceEEeccCcceeEEecc
Confidence            888877777  778999999999999986

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-30  Score=273.59  Aligned_cols=450  Identities=15%  Similarity=0.172  Sum_probs=302.7

Q ss_pred             CCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcE--EEEEecCcEEEEEEE
Q 005459           20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKL--IAVVTSSLYLHIFKV   96 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~--lav~t~dg~l~l~~l   96 (696)
                      ++.-.++|+|.|.++|++ .|+.+.|||.. ..-.+..++.      +.|.+.++.|.|+-.+  |+++..|+.+++||+
T Consensus       106 ~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~-~~~~th~fkG------~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl  178 (775)
T KOG0319|consen  106 APVITMAFDPTGTLLATGGADGRVKVWDIK-NGYCTHSFKG------HGGVVSSLLFHPHWNRWLLASGATDGTVRVWNL  178 (775)
T ss_pred             CCeEEEEEcCCCceEEeccccceEEEEEee-CCEEEEEecC------CCceEEEEEeCCccchhheeecCCCceEEEEEc
Confidence            345557899999999998 58899999995 5444454432      2366678999999875  889999999999999


Q ss_pred             EecCc-ccccCCCC---------CCCc-----------eeeeee-EEEeeeccccccceeEEEeeeC-----CCeEEEEe
Q 005459           97 QITEK-SIQIGGKQ---------PSGL-----------FFIKIS-LVLNEQLPFAEKGLSVSNIVSD-----NKHMLLGL  149 (696)
Q Consensus        97 ~~~~~-~~~~~~~~---------~~~~-----------~~~~~~-l~~~~~~~~~~~~~~v~~~~~~-----~~~llv~t  149 (696)
                      ..... ......|.         ..+.           .+|++. .......+....-.++ .+..+     +.++++++
T Consensus       179 ~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~v-v~l~~~~~~~~~~~~TaG  257 (775)
T KOG0319|consen  179 NDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESV-VRLREELGGKGEYIITAG  257 (775)
T ss_pred             ccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeE-EEechhcCCcceEEEEec
Confidence            85543 11111111         0000           112110 0000000000000011 11122     35788888


Q ss_pred             cCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCC---------ccccCCcCCCcccEEEEEEccCc
Q 005459          150 SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSG---------AFVSDHKFPISSAIIWLELCLPM  220 (696)
Q Consensus       150 ~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~  220 (696)
                      .+|.++.  |+.+..........|-...-..-.+....+++....++.         ......+.+....|.+|.|    
T Consensus       258 ~~g~~~~--~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~----  331 (775)
T KOG0319|consen  258 GSGVVQY--WDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKF----  331 (775)
T ss_pred             CCceEEE--EecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeee----
Confidence            8999887  454432211100011011111222223333322221111         1111223344445555553    


Q ss_pred             ceEEEEEeCCcEEEEeeccCCceeeeeeecce--ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCc---eeeE
Q 005459          221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESAS---LIRT  294 (696)
Q Consensus       221 ~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~---~~~~  294 (696)
                           +-|+-+.++++++...+++.+..+..+  +.||++.+. ++...+|-+||+|+.|.++++|.++++..   ++..
T Consensus       332 -----lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~  406 (775)
T KOG0319|consen  332 -----LGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQ  406 (775)
T ss_pred             -----cCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhh
Confidence                 557778888888988999887765544  489999998 88778889999999999999999855322   2333


Q ss_pred             EeeccCCCCCCCCCCeEEEEECCCC-CeEEEEEcCCcEEEEEccCC-------eeEE--EeecccccceecccccCCCCC
Q 005459          295 VSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGC-------RLMS--TIRQISLSSISSPIVKPNQDC  364 (696)
Q Consensus       295 ~~~~~~~~~~~h~g~V~~l~~spdg-~~lasg~~Dg~v~vW~~~~~-------~~~~--~l~~~~~~~v~~~~~sp~~~~  364 (696)
                      ..+        |++.|.+++++..| ..|++++.|+++++|++...       .+.+  +-..| ...|++++++|++  
T Consensus       407 ~~g--------H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH-dKdIN~Vaia~nd--  475 (775)
T KOG0319|consen  407 ANG--------HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH-DKDINCVAIAPND--  475 (775)
T ss_pred             hcc--------cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh-cccccceEecCCC--
Confidence            344        99999999998755 48899999999999999761       1111  11234 6679999999998  


Q ss_pred             Cccceecce---eeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcce
Q 005459          365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK  438 (696)
Q Consensus       365 ~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~  438 (696)
                        ..+++|+   +.++|+.+..++..++.||...||+++|   .+.++|+|.|+|+++|.+.+.+.              
T Consensus       476 --kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC--------------  539 (775)
T KOG0319|consen  476 --KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC--------------  539 (775)
T ss_pred             --ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecccee--------------
Confidence              9999999   9999999999999999999999988888   55789999999999999887765              


Q ss_pred             eEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecC
Q 005459          439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDS  517 (696)
Q Consensus       439 w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~  517 (696)
                            ..++.||...|.-++|-.+|+.|+++|.||.+ +|++.++....--                            
T Consensus       540 ------lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl----------------------------  585 (775)
T KOG0319|consen  540 ------LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL----------------------------  585 (775)
T ss_pred             ------eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh----------------------------
Confidence                  78999999999999999999999999999999 9999987532210                            


Q ss_pred             CCeEEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEE
Q 005459          518 SNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFH  569 (696)
Q Consensus       518 ~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~  569 (696)
                       +.++=|+|                 +  +..++..++++++++|+.+.+|+
T Consensus       586 -D~H~DrvW-----------------a--L~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  586 -DAHNDRVW-----------------A--LSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             -hhccceeE-----------------E--EeecCccceeEecCCCeEEEEee
Confidence             11222344                 2  44555677888889999999996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=5.2e-29  Score=262.30  Aligned_cols=381  Identities=14%  Similarity=0.178  Sum_probs=277.3

Q ss_pred             CCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCC-----CcEEEEEecCcEEEE
Q 005459           20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD-----TKLIAVVTSSLYLHI   93 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPD-----g~~lav~t~dg~l~l   93 (696)
                      +...-+.|++|+.-+.++ .|+.+.|||.. .+..       .+.+..+..+-++.+-++     |.++.+++.+|.+++
T Consensus       193 S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~-~~~~-------l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~  264 (775)
T KOG0319|consen  193 SAVTSLAFSEDSLELLSVGRDKVIIVWDLV-QYKK-------LKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQY  264 (775)
T ss_pred             hheeeeeeccCCceEEEeccCcEEEEeehh-hhhh-------hheechhhheeeEEEechhcCCcceEEEEecCCceEEE
Confidence            344457899998755555 67789999994 3221       122334455556777777     779999999999999


Q ss_pred             EEEEecCcccccCCCCCCC------------ceee--eeeEEEe------eeccccccceeEEEe---eeCCCeEEEEec
Q 005459           94 FKVQITEKSIQIGGKQPSG------------LFFI--KISLVLN------EQLPFAEKGLSVSNI---VSDNKHMLLGLS  150 (696)
Q Consensus        94 ~~l~~~~~~~~~~~~~~~~------------~~~~--~~~l~~~------~~~~~~~~~~~v~~~---~~~~~~llv~t~  150 (696)
                      |+.+++...........++            ..+.  .-++.+-      -...+.+-...|..+   -+....|+++|.
T Consensus       265 ~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATN  344 (775)
T KOG0319|consen  265 WDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATN  344 (775)
T ss_pred             EecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeC
Confidence            9998765321100000100            0000  0011100      001112222233333   344478999999


Q ss_pred             CCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCC
Q 005459          151 DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNG  230 (696)
Q Consensus       151 ~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG  230 (696)
                      .+.++.+...+..-.                                     .+.+|...|.++.          .+.+|
T Consensus       345 s~~lr~y~~~~~~c~-------------------------------------ii~GH~e~vlSL~----------~~~~g  377 (775)
T KOG0319|consen  345 SPELRLYTLPTSYCQ-------------------------------------IIPGHTEAVLSLD----------VWSSG  377 (775)
T ss_pred             CCceEEEecCCCceE-------------------------------------EEeCchhheeeee----------ecccC
Confidence            999988732221100                                     1224555565543          56889


Q ss_pred             cEEEEeeccCCceeeeeeecce-------ecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCC--ceeeEEeecc
Q 005459          231 QLMSCSVSKKGLKLAEFIKIDK-------ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESA--SLIRTVSLYD  299 (696)
Q Consensus       231 ~~~~~~~~d~~~~~~~~~~~~~-------~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~--~~~~~~~~~~  299 (696)
                      -++++++.|.++++|...+...       ..+|...+. ++++.. ..++|+++.|+++++|++....  .....+.. +
T Consensus       378 ~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~-~  456 (775)
T KOG0319|consen  378 DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC-R  456 (775)
T ss_pred             cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh-h
Confidence            9999999999999997643221       167988887 888774 5799999999999999997611  11111100 0


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM  376 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~  376 (696)
                       .....|...|+|++.+|+.+.+|+|+.|++.++|+++...+..+|.|| ...|.++.|+|++    +.+++.+   +++
T Consensus       457 -~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH-~RGvw~V~Fs~~d----q~laT~SgD~TvK  530 (775)
T KOG0319|consen  457 -YTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH-TRGVWCVSFSKND----QLLATCSGDKTVK  530 (775)
T ss_pred             -HHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC-ccceEEEEecccc----ceeEeccCCceEE
Confidence             001149999999999999999999999999999999999999999999 7789999999998    8888877   999


Q ss_pred             EEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC
Q 005459          377 QWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW  453 (696)
Q Consensus       377 ~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  453 (696)
                      +|.+.++.++.++.||...|...+|   ++.++|++.||.+++|++.+++.                    ..++.+|+.
T Consensus       531 IW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC--------------------~~tlD~H~D  590 (775)
T KOG0319|consen  531 IWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC--------------------EMTLDAHND  590 (775)
T ss_pred             EEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh--------------------hhhhhhccc
Confidence            9999999999999999999988888   89999999999999999998886                    678999999


Q ss_pred             ceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459          454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       454 ~I~~va~s~dG~~la~ag~dG~i-~w~~~s  482 (696)
                      .|++++.+|++..+++||.||.+ +|.=.|
T Consensus       591 rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  591 RVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            99999999999999999999999 996444

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=6.6e-29  Score=235.55  Aligned_cols=282  Identities=13%  Similarity=0.151  Sum_probs=219.6

Q ss_pred             hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeE
Q 005459           66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM  145 (696)
Q Consensus        66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~l  145 (696)
                      +-+.+.++.|+||++.|++++.||.|.|||.-+.++...                     +++.....-.++++|.+..+
T Consensus        54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~ha---------------------ipl~s~WVMtCA~sPSg~~V  112 (343)
T KOG0286|consen   54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHA---------------------IPLPSSWVMTCAYSPSGNFV  112 (343)
T ss_pred             cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeE---------------------EecCceeEEEEEECCCCCeE
Confidence            347889999999999999999999999999987765322                     12233344557889999999


Q ss_pred             EEEecCCcEEEEecCCcc-ccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEE
Q 005459          146 LLGLSDGSLYSISWKGEF-YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF  224 (696)
Q Consensus       146 lv~t~~g~i~~~~w~~~~-~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  224 (696)
                      ++|.-|+...+++..... ....                               .+...+.+|..++.+..         
T Consensus       113 AcGGLdN~Csiy~ls~~d~~g~~-------------------------------~v~r~l~gHtgylScC~---------  152 (343)
T KOG0286|consen  113 ACGGLDNKCSIYPLSTRDAEGNV-------------------------------RVSRELAGHTGYLSCCR---------  152 (343)
T ss_pred             EecCcCceeEEEecccccccccc-------------------------------eeeeeecCccceeEEEE---------
Confidence            999988877666654221 1100                               11224556677776654         


Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                       |.+ ...+++++.|.+.-+||+++++..   .||..-|. ++++| +++.+++|+-|++.++||++. +...+++.+  
T Consensus       153 -f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~g--  227 (343)
T KOG0286|consen  153 -FLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEG--  227 (343)
T ss_pred             -EcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-cceeEeecc--
Confidence             445 445788899999999999998765   68887666 99999 999999999999999999999 899999999  


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc-cccceecccccCCCCCCccceecceeeEEE
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGTSMMQW  378 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~-~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W  378 (696)
                            |...|++++|.|+|..+++|++|++.+++|+...+.+..+... -...|++++||..                 
T Consensus       228 ------hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S-----------------  284 (343)
T KOG0286|consen  228 ------HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS-----------------  284 (343)
T ss_pred             ------cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc-----------------
Confidence                  9999999999999999999999999999999887666554421 0111222222222                 


Q ss_pred             cCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEE
Q 005459          379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV  458 (696)
Q Consensus       379 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v  458 (696)
                                             ++.+.+|..|.++.+||.+.++.                    ...+.+|...|.++
T Consensus       285 -----------------------GRlLfagy~d~~c~vWDtlk~e~--------------------vg~L~GHeNRvScl  321 (343)
T KOG0286|consen  285 -----------------------GRLLFAGYDDFTCNVWDTLKGER--------------------VGVLAGHENRVSCL  321 (343)
T ss_pred             -----------------------ccEEEeeecCCceeEeeccccce--------------------EEEeeccCCeeEEE
Confidence                                   55666777788999999888775                    45677999999999


Q ss_pred             EEcCCCCEEEEEeCCccE-EEE
Q 005459          459 AASKDGMFLAVAGLHGLI-LYD  479 (696)
Q Consensus       459 a~s~dG~~la~ag~dG~i-~w~  479 (696)
                      ..+|||.-|++|+-|.++ +|.
T Consensus       322 ~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  322 GVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EECCCCcEEEecchhHheeecC
Confidence            999999999999999999 984

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.96  E-value=1.9e-27  Score=224.55  Aligned_cols=277  Identities=17%  Similarity=0.199  Sum_probs=219.2

Q ss_pred             ecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccC----CCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE
Q 005459          253 ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAE----SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW  326 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~----~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~  326 (696)
                      +.+|.+.|. ++..++ ...+.+++.|.++.+|++..    ++...+.+.+        |.-.|..+..++||++.++++
T Consensus        11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G--------HsH~v~dv~~s~dg~~alS~s   82 (315)
T KOG0279|consen   11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG--------HSHFVSDVVLSSDGNFALSAS   82 (315)
T ss_pred             ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec--------cceEecceEEccCCceEEecc
Confidence            368999988 898886 67899999999999999865    2456777888        999999999999999999999


Q ss_pred             cCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCC-cceE--EEEe
Q 005459          327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS-SERV--LIFS  400 (696)
Q Consensus       327 ~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~-~~~v--~~~~  400 (696)
                      .|+++++||+.+++..+.|.+| ...|.+++|+||.    ..++||+   ++++|+..+...+...... .+.|  +.|+
T Consensus        83 wD~~lrlWDl~~g~~t~~f~GH-~~dVlsva~s~dn----~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfs  157 (315)
T KOG0279|consen   83 WDGTLRLWDLATGESTRRFVGH-TKDVLSVAFSTDN----RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFS  157 (315)
T ss_pred             ccceEEEEEecCCcEEEEEEec-CCceEEEEecCCC----ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEc
Confidence            9999999999999999999999 6679999999998    8999999   9999999877666555443 6777  5566


Q ss_pred             c---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-
Q 005459          401 F---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-  476 (696)
Q Consensus       401 ~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-  476 (696)
                      |   .-.+++++.|+++++|++.+-+-                    ...|.+|+..+..+++||||..+|+||+||.+ 
T Consensus       158 P~~~~p~Ivs~s~DktvKvWnl~~~~l--------------------~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~  217 (315)
T KOG0279|consen  158 PNESNPIIVSASWDKTVKVWNLRNCQL--------------------RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAM  217 (315)
T ss_pred             CCCCCcEEEEccCCceEEEEccCCcch--------------------hhccccccccEEEEEECCCCCEEecCCCCceEE
Confidence            6   34689999999999999876554                    67899999999999999999999999999999 


Q ss_pred             EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC--CCCcccee----EEeecCCccE---
Q 005459          477 LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLL----CRKSLLAKPI---  547 (696)
Q Consensus       477 ~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~--~l~~~~~~----~~~~~~~~~l---  547 (696)
                      +||++.+|-..    ..|....|..+++.++....|...+    ..|++|+.+  .......+    ...+. ..|.   
T Consensus       218 LwdL~~~k~ly----sl~a~~~v~sl~fspnrywL~~at~----~sIkIwdl~~~~~v~~l~~d~~g~s~~~-~~~~cls  288 (315)
T KOG0279|consen  218 LWDLNEGKNLY----SLEAFDIVNSLCFSPNRYWLCAATA----TSIKIWDLESKAVVEELKLDGIGPSSKA-GDPICLS  288 (315)
T ss_pred             EEEccCCceeE----eccCCCeEeeEEecCCceeEeeccC----CceEEEeccchhhhhhcccccccccccc-CCcEEEE
Confidence            99999987522    1223234779999887665553332    349999875  11111111    10101 1233   


Q ss_pred             -EEEccCCEEEEEEcCceEEEEEEE
Q 005459          548 -VMDVYEDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       548 -~~~~~~~~llv~~~d~~~~l~~~~  571 (696)
                       +.+.+|..|+.++.|+-|++|.+.
T Consensus       289 laws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  289 LAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEEcCCCcEEEeeecCCcEEEEEee
Confidence             334578999999999999999875

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.96  E-value=1.5e-27  Score=225.09  Aligned_cols=278  Identities=17%  Similarity=0.240  Sum_probs=220.9

Q ss_pred             CcCCCcccEEEEEEccCcceEEEEEeC-CcEEEEeeccCCceeeeeeec--------ceecCCCCeEE-EEEcCCCcEEE
Q 005459          203 HKFPISSAIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKI--------DKELGSGDAVC-ASIAPEQQILA  272 (696)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~s~d-G~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~v~-v~~sp~~~~la  272 (696)
                      .+..+...|+.+.          ..+. -..++.++.|+++..|++...        +.+.||+..+. ++.++||++..
T Consensus        10 tl~gh~d~Vt~la----------~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~al   79 (315)
T KOG0279|consen   10 TLEGHTDWVTALA----------IKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFAL   79 (315)
T ss_pred             eecCCCceEEEEE----------eecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEE
Confidence            3445666676655          3343 456777778888888987532        12378999999 99999999999


Q ss_pred             EEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeeccc-cc
Q 005459          273 VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS-LS  351 (696)
Q Consensus       273 ~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~-~~  351 (696)
                      +|+.|+++|+||+.. ++..+.+.+        |+..|.+++||||.+.+++|+.|+++++|++.+.+.. ++..++ .+
T Consensus        80 S~swD~~lrlWDl~~-g~~t~~f~G--------H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~-t~~~~~~~~  149 (315)
T KOG0279|consen   80 SASWDGTLRLWDLAT-GESTRRFVG--------HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY-TIHEDSHRE  149 (315)
T ss_pred             eccccceEEEEEecC-CcEEEEEEe--------cCCceEEEEecCCCceeecCCCcceeeeeeecccEEE-EEecCCCcC
Confidence            999999999999998 788999999        9999999999999999999999999999999987544 444433 78


Q ss_pred             ceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCe
Q 005459          352 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDR  425 (696)
Q Consensus       352 ~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~  425 (696)
                      .|+++.|+|+.  ....+++++   ++++|+.++.++...+.+|...+  +.+++ |..+++|+.|+...+||+.+++. 
T Consensus       150 WVscvrfsP~~--~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-  226 (315)
T KOG0279|consen  150 WVSCVRFSPNE--SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-  226 (315)
T ss_pred             cEEEEEEcCCC--CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-
Confidence            89999999984  125677777   99999999999999999999888  67777 88999999999999999998876 


Q ss_pred             EEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceE------ecCCccceeeeEE
Q 005459          426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR------VFGDITQEQKIQS  499 (696)
Q Consensus       426 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~------~f~~~~~e~~~~v  499 (696)
                                          ..+++|+.+|++++|+|+--.|+.|...+..+||..+++.-      ..+......+..|
T Consensus       227 --------------------lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~c  286 (315)
T KOG0279|consen  227 --------------------LYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPIC  286 (315)
T ss_pred             --------------------eEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEE
Confidence                                24678899999999999988888887777559999998631      1111112223457


Q ss_pred             EeEeee--CcEEEEEEeecCCCeEEEEEeeC
Q 005459          500 KGLLWL--GKIIVVCNYIDSSNTYELLFYPR  528 (696)
Q Consensus       500 ~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~  528 (696)
                      ..++|.  +..|.++ |    .+.-||+|..
T Consensus       287 lslaws~dG~tLf~g-~----td~~irv~qv  312 (315)
T KOG0279|consen  287 LSLAWSADGQTLFAG-Y----TDNVIRVWQV  312 (315)
T ss_pred             EEEEEcCCCcEEEee-e----cCCcEEEEEe
Confidence            789998  5566655 3    2356888753

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=6.3e-27  Score=220.03  Aligned_cols=276  Identities=12%  Similarity=0.138  Sum_probs=219.5

Q ss_pred             ecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCC--ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459          253 ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS  328 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D  328 (696)
                      +.+|.+.+. ++|+|- |.+||+++.|..||+|+...+.  .+...+..       +|+..|++++|||.|++||+|+.|
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-------~hkrsVRsvAwsp~g~~La~aSFD   82 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-------GHKRSVRSVAWSPHGRYLASASFD   82 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc-------cchheeeeeeecCCCcEEEEeecc
Confidence            468888888 999998 9999999999999999987522  23333333       499999999999999999999999


Q ss_pred             CcEEEEEccCC--eeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCC---CceEEEEecCCcceE--EE
Q 005459          329 RGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY---GYRLYAIEEGSSERV--LI  398 (696)
Q Consensus       329 g~v~vW~~~~~--~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~---~~~l~~~~~~~~~~v--~~  398 (696)
                      .++.||.-.++  +++.+|+|| .+.|.+++|++++    .+|++.+   ++-+|...   .+++..++++|...|  +.
T Consensus        83 ~t~~Iw~k~~~efecv~~lEGH-EnEVK~Vaws~sG----~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~  157 (312)
T KOG0645|consen   83 ATVVIWKKEDGEFECVATLEGH-ENEVKCVAWSASG----NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVI  157 (312)
T ss_pred             ceEEEeecCCCceeEEeeeecc-ccceeEEEEcCCC----CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEE
Confidence            99999987654  578899999 8889999999999    9999988   77788764   468889999999888  77


Q ss_pred             Eec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-
Q 005459          399 FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-  476 (696)
Q Consensus       399 ~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-  476 (696)
                      ++| ...++|+++|+++++|.-..+++              |   .+.+++.+|+..|.+++|++.|..|++++.|+++ 
T Consensus       158 WHPt~dlL~S~SYDnTIk~~~~~~ddd--------------W---~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~  220 (312)
T KOG0645|consen  158 WHPTEDLLFSCSYDNTIKVYRDEDDDD--------------W---ECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVS  220 (312)
T ss_pred             EcCCcceeEEeccCCeEEEEeecCCCC--------------e---eEEEEecCccceEEEEEecCCCceEEEecCCcceE
Confidence            888 77899999999999998665443              2   2456788999999999999999999999999999 


Q ss_pred             EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC-CCCcc--------ceeEEeecCCccE
Q 005459          477 LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQS--------SLLCRKSLLAKPI  547 (696)
Q Consensus       477 ~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~-~l~~~--------~~~~~~~~~~~~l  547 (696)
                      +|-..+       +...++...+-.+.|.++.|.++     .++..||+|..+ .-+..        ...|..++.+  +
T Consensus       221 Iw~~~~-------~~~~~~sr~~Y~v~W~~~~IaS~-----ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNs--V  286 (312)
T KOG0645|consen  221 IWRLYT-------DLSGMHSRALYDVPWDNGVIASG-----GGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNS--V  286 (312)
T ss_pred             eeeecc-------CcchhcccceEeeeecccceEec-----cCCCEEEEEEecCCCCCchHHHHHhhhcccccccce--E
Confidence            997553       23344444566789996666666     455789999875 22221        1224444444  7


Q ss_pred             EEEc-cCCEEEEEEcCceEEEEEEE
Q 005459          548 VMDV-YEDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       548 ~~~~-~~~~llv~~~d~~~~l~~~~  571 (696)
                      .-++ ..+.|+.++.|+.+++|.++
T Consensus       287 ~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  287 QWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EEcCCCCCceeecCCCceEEEEEec
Confidence            7777 47778889999999999875

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=2.8e-28  Score=259.72  Aligned_cols=238  Identities=18%  Similarity=0.265  Sum_probs=211.7

Q ss_pred             EEEEEEccCc--ceEEEEEeCCcEEEEeeccCCceeeeeeecc----------------------------------eec
Q 005459          211 IIWLELCLPM--RLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----------------------------------KEL  254 (696)
Q Consensus       211 i~~~~~~~~~--~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~----------------------------------~~~  254 (696)
                      |.-.++.+..  -.++-|++|++.++++..|..+++|.....+                                  .+.
T Consensus       369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~  448 (707)
T KOG0263|consen  369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY  448 (707)
T ss_pred             EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence            3333444444  4567799999999999999999999865210                                  013


Q ss_pred             CCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEE
Q 005459          255 GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV  333 (696)
Q Consensus       255 ~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~v  333 (696)
                      ||.++|. ++|+|+.++|.++++|++||+|.+++ ..++-..++        |..||+++.|+|-|+++|||+.|++-++
T Consensus       449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-~s~~V~y~G--------H~~PVwdV~F~P~GyYFatas~D~tArL  519 (707)
T KOG0263|consen  449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKG--------HLAPVWDVQFAPRGYYFATASHDQTARL  519 (707)
T ss_pred             cCCCceeeeeecccccceeeccCCcceeeeeccc-ceeEEEecC--------CCcceeeEEecCCceEEEecCCCceeee
Confidence            7999999 99999999999999999999999998 777777788        9999999999999999999999999999


Q ss_pred             EEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeee
Q 005459          334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLN  407 (696)
Q Consensus       334 W~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s  407 (696)
                      |+......+..+.+| .+.|.++.|+|+.    .++++|+   +++.||..++..+..+.||..+|  ++|++ |+++++
T Consensus       520 Ws~d~~~PlRifagh-lsDV~cv~FHPNs----~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS  594 (707)
T KOG0263|consen  520 WSTDHNKPLRIFAGH-LSDVDCVSFHPNS----NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS  594 (707)
T ss_pred             eecccCCchhhhccc-ccccceEEECCcc----cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence            999998889999998 8889999999999    9999998   99999999999999999999999  55666 999999


Q ss_pred             ccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459          408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       408 ~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s  482 (696)
                      |+.|+.+++||+..+..                    ...+.+|.+.|.++.||.||..||+||.|..+ +||+..
T Consensus       595 g~ed~~I~iWDl~~~~~--------------------v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  595 GDEDGLIKIWDLANGSL--------------------VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             cccCCcEEEEEcCCCcc--------------------hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            99999999999888775                    66788999999999999999999999999999 999864

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=2.7e-28  Score=259.86  Aligned_cols=242  Identities=17%  Similarity=0.222  Sum_probs=200.6

Q ss_pred             cCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCe
Q 005459          204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGV  279 (696)
Q Consensus       204 ~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~  279 (696)
                      +.+|..+|...          .|+||.+++++++.|.++++|...+..+.   .||..+|+ +.|+|.|-++|+|+.|++
T Consensus       447 L~GH~GPVyg~----------sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~t  516 (707)
T KOG0263|consen  447 LYGHSGPVYGC----------SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQT  516 (707)
T ss_pred             eecCCCceeee----------eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCce
Confidence            55667777664          48999999999999999999998876554   79999999 999999999999999999


Q ss_pred             EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceeccccc
Q 005459          280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK  359 (696)
Q Consensus       280 v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~s  359 (696)
                      .++|..+. ..+.+.+.+        |-+.|.|++|.|+.+++|+|+.|++||+||+.+|..+..+.|| .++|.+++||
T Consensus       517 ArLWs~d~-~~PlRifag--------hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~V~al~~S  586 (707)
T KOG0263|consen  517 ARLWSTDH-NKPLRIFAG--------HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGPVTALAFS  586 (707)
T ss_pred             eeeeeccc-CCchhhhcc--------cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCceEEEEEc
Confidence            99999987 788888888        9999999999999999999999999999999999999999998 8899999999


Q ss_pred             CCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEE-----
Q 005459          360 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLV-----  428 (696)
Q Consensus       360 p~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~-----  428 (696)
                      |+|    .++++|.   .+++||..+++++..+.+|.+.+..++|   +..+++++.|.++++||+.+......+     
T Consensus       587 p~G----r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~  662 (707)
T KOG0263|consen  587 PCG----RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHIST  662 (707)
T ss_pred             CCC----ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccccccc
Confidence            999    9999998   8999999999999999999999966666   889999999999999998765443111     


Q ss_pred             EecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEE
Q 005459          429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA  470 (696)
Q Consensus       429 ~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~a  470 (696)
                      +.++.++... ....+..+|...+.||..+.|..-.-.+++|
T Consensus       663 ~~~~~~~~~~-~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  663 SNSAITQENN-ASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             ccccccccCC-CCcceeeeeeecCceEEEEEEeccceeEEec
Confidence            1011111000 0011234566667789999998877556555

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.96  E-value=4.8e-27  Score=222.92  Aligned_cols=277  Identities=16%  Similarity=0.148  Sum_probs=219.2

Q ss_pred             CcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCC
Q 005459          203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRG  278 (696)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg  278 (696)
                      .+.+|...|.+|.          +++|++.++++++|+.+-+||..+..+.   .-....|. +||+|.|+++|.|+-|+
T Consensus        50 ~LkGH~~Ki~~~~----------ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN  119 (343)
T KOG0286|consen   50 TLKGHLNKIYAMD----------WSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN  119 (343)
T ss_pred             EecccccceeeeE----------ecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc
Confidence            4567778888887          6788888888888888888998765443   12245565 99999999999999999


Q ss_pred             eEEEEEccCC--C---ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccce
Q 005459          279 VVELYDLAES--A---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI  353 (696)
Q Consensus       279 ~v~vw~~~~~--~---~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v  353 (696)
                      ...||++...  .   ...+.+.+        |++-+.|+.|-+|+ .|++|+.|.+..+||+++++.+..+.+| ...|
T Consensus       120 ~Csiy~ls~~d~~g~~~v~r~l~g--------HtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH-~gDV  189 (343)
T KOG0286|consen  120 KCSIYPLSTRDAEGNVRVSRELAG--------HTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGH-TGDV  189 (343)
T ss_pred             eeEEEecccccccccceeeeeecC--------ccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCC-cccE
Confidence            9999999852  1   23455666        99999999999865 6889999999999999999999999999 7889


Q ss_pred             ecccccC-CCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeE
Q 005459          354 SSPIVKP-NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRL  426 (696)
Q Consensus       354 ~~~~~sp-~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~  426 (696)
                      .++.++| ++    +.++||+   ..++||.+.+....++.+|...|  +.|-| +..+++|+.|++.+++|+....+ +
T Consensus       190 ~slsl~p~~~----ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~  264 (343)
T KOG0286|consen  190 MSLSLSPSDG----NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-L  264 (343)
T ss_pred             EEEecCCCCC----CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-E
Confidence            9999999 55    8899987   89999999999999999999999  55555 88999999999999999876544 2


Q ss_pred             EEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee
Q 005459          427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL  505 (696)
Q Consensus       427 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~  505 (696)
                      .+|..                 ..-+.+|.+++||..|++|..|..|..+ +||...++-.. .-..||+.+.+.++.=.
T Consensus       265 a~ys~-----------------~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg-~L~GHeNRvScl~~s~D  326 (343)
T KOG0286|consen  265 AVYSH-----------------DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG-VLAGHENRVSCLGVSPD  326 (343)
T ss_pred             eeecc-----------------CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE-EeeccCCeeEEEEECCC
Confidence            22221                 1235689999999999999999999999 99988775321 11246666444455444


Q ss_pred             CcEEEEEEeecCCCeEEEEEee
Q 005459          506 GKIIVVCNYIDSSNTYELLFYP  527 (696)
Q Consensus       506 ~~~lv~~~~~~~~~~~~lr~y~  527 (696)
                      +-.+.++     +-+..||+|.
T Consensus       327 G~av~Tg-----SWDs~lriW~  343 (343)
T KOG0286|consen  327 GMAVATG-----SWDSTLRIWA  343 (343)
T ss_pred             CcEEEec-----chhHheeecC
Confidence            4444444     5567899984

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.96  E-value=6.5e-27  Score=234.98  Aligned_cols=321  Identities=17%  Similarity=0.214  Sum_probs=237.3

Q ss_pred             hcccccEEEEcCCCc-EEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccc----cceeEEEe--
Q 005459           66 REGENLQAVWSPDTK-LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAE----KGLSVSNI--  138 (696)
Q Consensus        66 ~~G~~~~v~wsPDg~-~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~v~~~--  138 (696)
                      +..++...+|+|-.. .+|+++.+-..++|++.........   +          +.++..+...+    ....|+++  
T Consensus       177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~---q----------~~lrh~~~~~~~s~~~nkdVT~L~W  243 (524)
T KOG0273|consen  177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST---Q----------LVLRHCIREGGKSVPSNKDVTSLDW  243 (524)
T ss_pred             CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccch---h----------hhhhhhhhhhcccCCccCCcceEEe
Confidence            456789999999777 9999999999999999741110000   0          00011110011    11234555  


Q ss_pred             eeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEcc
Q 005459          139 VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL  218 (696)
Q Consensus       139 ~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  218 (696)
                      ..+|..|++|..+|.+++|.-++....                                     .+..|+.+|.++.   
T Consensus       244 n~~G~~LatG~~~G~~riw~~~G~l~~-------------------------------------tl~~HkgPI~slK---  283 (524)
T KOG0273|consen  244 NNDGTLLATGSEDGEARIWNKDGNLIS-------------------------------------TLGQHKGPIFSLK---  283 (524)
T ss_pred             cCCCCeEEEeecCcEEEEEecCchhhh-------------------------------------hhhccCCceEEEE---
Confidence            455889999999999998655544322                                     2335677888877   


Q ss_pred             CcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCe-EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeE
Q 005459          219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDA-VCASIAPEQQILAVGTRRGVVELYDLAESASLIRT  294 (696)
Q Consensus       219 ~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~-v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~  294 (696)
                             ...+|.++++++-|+++-+||..+++..   ..|+.+ .-|.|-. ..-+|+.+.||.|+||.+.. ..++.+
T Consensus       284 -------Wnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~-~~P~~t  354 (524)
T KOG0273|consen  284 -------WNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGE-DRPVKT  354 (524)
T ss_pred             -------EcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecC-CCccee
Confidence                   5678889999999999999998776543   345544 3355543 45689999999999999988 889999


Q ss_pred             EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceeccee
Q 005459          295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTS  374 (696)
Q Consensus       295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~  374 (696)
                      +.+        |.++|.+|.|.|.|..|++++.|+|+++|+.....+.+.|..| ...|..+.++|+++-+..+..    
T Consensus       355 ~~G--------H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H-skei~t~~wsp~g~v~~n~~~----  421 (524)
T KOG0273|consen  355 FIG--------HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH-SKEIYTIKWSPTGPVTSNPNM----  421 (524)
T ss_pred             eec--------ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh-ccceeeEeecCCCCccCCCcC----
Confidence            999        9999999999999999999999999999999888888899988 667888888888732111111    


Q ss_pred             eEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCc
Q 005459          375 MMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP  454 (696)
Q Consensus       375 ~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  454 (696)
                                                 +..+++++.|+++++||+..+..                    ..++..|+.|
T Consensus       422 ---------------------------~~~l~sas~dstV~lwdv~~gv~--------------------i~~f~kH~~p  454 (524)
T KOG0273|consen  422 ---------------------------NLMLASASFDSTVKLWDVESGVP--------------------IHTLMKHQEP  454 (524)
T ss_pred             ---------------------------CceEEEeecCCeEEEEEccCCce--------------------eEeeccCCCc
Confidence                                       23467888999999999988776                    5678899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEE
Q 005459          455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVC  512 (696)
Q Consensus       455 I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~  512 (696)
                      |++++|||+|+|+|+|+.||.+ +|+.++++  +|..- + ..-.+..++|.  ++.|.++
T Consensus       455 VysvafS~~g~ylAsGs~dg~V~iws~~~~~--l~~s~-~-~~~~Ifel~Wn~~G~kl~~~  511 (524)
T KOG0273|consen  455 VYSVAFSPNGRYLASGSLDGCVHIWSTKTGK--LVKSY-Q-GTGGIFELCWNAAGDKLGAC  511 (524)
T ss_pred             eEEEEecCCCcEEEecCCCCeeEeccccchh--eeEee-c-CCCeEEEEEEcCCCCEEEEE
Confidence            9999999999999999999999 99999986  22211 1 11125679996  4455543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.95  E-value=3.6e-28  Score=239.89  Aligned_cols=265  Identities=14%  Similarity=0.211  Sum_probs=223.1

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeec--c-eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKI--D-KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~--~-~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      +.++|+||.+++++..|...+|+....  + .++.|+.+|+ +.|++++.++++|..+|.|++|+...  ..++.+..  
T Consensus       102 v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk~~~a--  177 (464)
T KOG0284|consen  102 VRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVKIIQA--  177 (464)
T ss_pred             EEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhHHhhH--
Confidence            457899999999999999999997532  2 2378999998 99999999999999999999999874  55666666  


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM  376 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~  376 (696)
                           .|...|++++|||+...++++++||+|+|||..-.+....|++||- .|.++.++|..    ..+++|+   .++
T Consensus       178 -----hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgw-dVksvdWHP~k----gLiasgskDnlVK  247 (464)
T KOG0284|consen  178 -----HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGW-DVKSVDWHPTK----GLIASGSKDNLVK  247 (464)
T ss_pred             -----hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCC-CcceeccCCcc----ceeEEccCCceeE
Confidence                 2558999999999999999999999999999988888888999954 59999999987    7888888   899


Q ss_pred             EEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC
Q 005459          377 QWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW  453 (696)
Q Consensus       377 ~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  453 (696)
                      +||+++++++.++.+|+..|.++.|   +..++|+|.|.+++++|+...++                    ...|.+|..
T Consensus       248 lWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE--------------------l~~~r~Hkk  307 (464)
T KOG0284|consen  248 LWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE--------------------LFTYRGHKK  307 (464)
T ss_pred             eecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH--------------------HHHhhcchh
Confidence            9999999999999999999977666   88999999999999999886555                    568899999


Q ss_pred             ceEEEEEcCCC-CEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459          454 PVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       454 ~I~~va~s~dG-~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      .+++++|+|-- ..+++||.||.+ +|.+...+  -........+-.|..|.|+  +++|.++     +++..+|||.|.
T Consensus       308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil~tg-----snd~t~rfw~r~  380 (464)
T KOG0284|consen  308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHILATG-----SNDRTVRFWTRN  380 (464)
T ss_pred             hheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccceeEeec-----CCCcceeeeccC
Confidence            99999999964 578999999999 99887321  1222222334457899997  6777765     677899999996

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=3.4e-25  Score=233.59  Aligned_cols=263  Identities=17%  Similarity=0.240  Sum_probs=211.8

Q ss_pred             eEEEEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       222 ~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      ..+.+++|..++++++ .+.+++|+..+.++.  .....+.|..|-|.++++++|..+|.+.|||+.. ..++.+++.  
T Consensus       377 Rsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-~~l~Eti~A--  452 (888)
T KOG0306|consen  377 RSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLAS-ASLVETIRA--  452 (888)
T ss_pred             eEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeeh-hhhhhhhhc--
Confidence            3455788877777654 456999998877765  3334667789999999999999999999999998 788888888  


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC-----CeeE--------EEeecccccceecccccCCCCCCc
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-----CRLM--------STIRQISLSSISSPIVKPNQDCKY  366 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~-----~~~~--------~~l~~~~~~~v~~~~~sp~~~~~~  366 (696)
                            |.|.+++|+-+||++.+++|+.|++|++||..-     +..-        .+|+-  .+.|.++.+|||+    
T Consensus       453 ------HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel--~ddvL~v~~Spdg----  520 (888)
T KOG0306|consen  453 ------HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL--EDDVLCVSVSPDG----  520 (888)
T ss_pred             ------cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec--cccEEEEEEcCCC----
Confidence                  999999999999999999999999999999731     1111        12221  3569999999999    


Q ss_pred             cceecce---eeEEEcCCCceEEEEecCCcceEEE--Eec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeE
Q 005459          367 EPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL  440 (696)
Q Consensus       367 ~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~  440 (696)
                      .+++-|-   ++.++-.++-+.+..+-||.-+|.+  ++| ++.++|+|.|.++++|-+..|+.                
T Consensus       521 k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC----------------  584 (888)
T KOG0306|consen  521 KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC----------------  584 (888)
T ss_pred             cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh----------------
Confidence            8888765   9999999999999999999999955  556 89999999999999999999887                


Q ss_pred             EeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCC-ccceeeeEEEeEee--eCcEEEEEEeec
Q 005459          441 HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLW--LGKIIVVCNYID  516 (696)
Q Consensus       441 ~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~-~~~e~~~~v~~~~w--~~~~lv~~~~~~  516 (696)
                          ..++.+|...|.++.|-|+...+.++|+||.+ -||-..  .+.+.. ..|.  ..|++++-  .+.+++.+    
T Consensus       585 ----HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k--Fe~iq~L~~H~--~ev~cLav~~~G~~vvs~----  652 (888)
T KOG0306|consen  585 ----HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK--FEEIQKLDGHH--SEVWCLAVSPNGSFVVSS----  652 (888)
T ss_pred             ----hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh--hhhheeeccch--heeeeeEEcCCCCeEEec----
Confidence                67889999999999999999999999999999 998654  222211 1122  23555544  46688876    


Q ss_pred             CCCeEEEEEeeCC
Q 005459          517 SSNTYELLFYPRY  529 (696)
Q Consensus       517 ~~~~~~lr~y~~~  529 (696)
                       +.++.||+|.+.
T Consensus       653 -shD~sIRlwE~t  664 (888)
T KOG0306|consen  653 -SHDKSIRLWERT  664 (888)
T ss_pred             -cCCceeEeeecc
Confidence             667899999986

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=3.6e-25  Score=233.40  Aligned_cols=490  Identities=11%  Similarity=0.126  Sum_probs=323.7

Q ss_pred             EeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCC
Q 005459           28 KVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGG  107 (696)
Q Consensus        28 s~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~  107 (696)
                      +..|++.|+..-..|.+||.+ .+.    ..+.........++.+++=+||.-.||+|-.||.|+||++..+...     
T Consensus        31 ~~~Gr~va~~a~E~vn~WdlR-tge----~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~-----  100 (888)
T KOG0306|consen   31 SGKGRAVAVSALEQVNIWDLR-TGE----IEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEIL-----  100 (888)
T ss_pred             cCCCcEEEEeccccEeEEeee-cch----hhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCcee-----
Confidence            344889988777789999996 432    1111111222357788888899999999999999999999754321     


Q ss_pred             CCCCCceeeeeeEEEeeeccccccceeEEEe--eeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCccccccccc
Q 005459          108 KQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHF  185 (696)
Q Consensus       108 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s  185 (696)
                                        +.+.++...|+++  ...|.+++.|+.|+.|.+|+.-++... +.+.   .+...+...-|.
T Consensus       101 ------------------~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl-~rL~---GHkd~iT~~~F~  158 (888)
T KOG0306|consen  101 ------------------ITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGL-FRLR---GHKDSITQALFL  158 (888)
T ss_pred             ------------------eeecccccceEEEEEcccCceEeecCCCccEEEEEeccceee-EEee---cchHHHhHHhcc
Confidence                              2234555566644  556799999999999988665555432 2221   112223333333


Q ss_pred             CCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeec--c-----e------
Q 005459          186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI--D-----K------  252 (696)
Q Consensus       186 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~--~-----~------  252 (696)
                      .+..+..+...+.+.+.+....+.++..+..+......+++.+  +.++++..|..+++|++...  +     .      
T Consensus       159 ~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~  236 (888)
T KOG0306|consen  159 NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLR  236 (888)
T ss_pred             CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeecc
Confidence            3222222222223444454555555555555555555555544  78888888999999998311  0     0      


Q ss_pred             ----ecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCc-------------------------------------e
Q 005459          253 ----ELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESAS-------------------------------------L  291 (696)
Q Consensus       253 ----~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~-------------------------------------~  291 (696)
                          .++-...+.++..++.++++.-+.|..+.+|.+....+                                     .
T Consensus       237 G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~  316 (888)
T KOG0306|consen  237 GTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLET  316 (888)
T ss_pred             ceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHh
Confidence                02223455566777777777777777777777644000                                     0


Q ss_pred             e------------------eE---Eee-------ccC--CC-----------CCCCCCCeEEEEECCCCCeEEEEEcCCc
Q 005459          292 I------------------RT---VSL-------YDW--GY-----------SMDDTGPVSCIAWTPDNSAFAVGWKSRG  330 (696)
Q Consensus       292 ~------------------~~---~~~-------~~~--~~-----------~~~h~g~V~~l~~spdg~~lasg~~Dg~  330 (696)
                      +                  .+   +..       .+.  +.           ..+|...|+++++|.|...++||+. +.
T Consensus       317 ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~S  395 (888)
T KOG0306|consen  317 IRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ES  395 (888)
T ss_pred             eechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-Cc
Confidence            0                  00   000       000  00           1269999999999999999999987 79


Q ss_pred             EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec---cee
Q 005459          331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKC  404 (696)
Q Consensus       331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~  404 (696)
                      +++|+..+.+++.++.-.   .+-+..|-|.+    .+++.|.   ...+++.....++-+.++|++.+|.++.   ++.
T Consensus       396 ikiWn~~t~kciRTi~~~---y~l~~~Fvpgd----~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g  468 (888)
T KOG0306|consen  396 IKIWNRDTLKCIRTITCG---YILASKFVPGD----RYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKG  468 (888)
T ss_pred             EEEEEccCcceeEEeccc---cEEEEEecCCC----ceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCc
Confidence            999999999999998743   57778888887    8888776   7778999888888888899999976655   888


Q ss_pred             eeeccCCCCceeeeeeecCC------eEEEEecC--------------CCCcc---------------eeEEeecCeeee
Q 005459          405 CLNRGVSGMTYARQVIYGED------RLLVVQSE--------------DTDEL---------------KILHLNLPVSYI  449 (696)
Q Consensus       405 ~~s~~~d~~~~~w~~~~~~~------~~~~~~~~--------------~~~~~---------------~w~~~~~~~~~~  449 (696)
                      .++++.|.++++|++..-.+      ++ +.-.+              -.|+.               ....++.-.++.
T Consensus       469 ~vT~saDktVkfWdf~l~~~~~gt~~k~-lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY  547 (888)
T KOG0306|consen  469 FVTGSADKTVKFWDFKLVVSVPGTQKKV-LSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY  547 (888)
T ss_pred             eEEecCCcEEEEEeEEEEeccCccccee-eeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec
Confidence            99999999999999864322      11 11100              01111               113444555677


Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE--ecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEE
Q 005459          450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR--VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELL  524 (696)
Q Consensus       450 ~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~--~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr  524 (696)
                      ||.-||.|+.+|||++.+++||.|..+ +|-++=|...  .|.   |..+  |..+.+.  .+...+|     +++..++
T Consensus       548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA---HdDS--vm~V~F~P~~~~FFt~-----gKD~kvK  617 (888)
T KOG0306|consen  548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA---HDDS--VMSVQFLPKTHLFFTC-----GKDGKVK  617 (888)
T ss_pred             ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc---ccCc--eeEEEEcccceeEEEe-----cCcceEE
Confidence            999999999999999999999999999 9988766543  221   2222  3344443  3344444     5778999


Q ss_pred             EeeCCCCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEE
Q 005459          525 FYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHV  570 (696)
Q Consensus       525 ~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~  570 (696)
                      -|+-++++.-..+..+-..-.-++++++|++++.++.|.++++|..
T Consensus       618 qWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~  663 (888)
T KOG0306|consen  618 QWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER  663 (888)
T ss_pred             eechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence            9988755543344444333445899999999999999999999974

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=5.4e-26  Score=213.77  Aligned_cols=269  Identities=12%  Similarity=0.234  Sum_probs=217.5

Q ss_pred             CCcccEEEEEEccCcceEEEEEeC-CcEEEEeeccCCceeeeeeeccee-------cCCCCeEE-EEEcCCCcEEEEEec
Q 005459          206 PISSAIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAVC-ASIAPEQQILAVGTR  276 (696)
Q Consensus       206 ~~~~~i~~~~~~~~~~~~~~~s~d-G~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~v~-v~~sp~~~~la~g~~  276 (696)
                      +++..+..++          +.|- |.++++++.|+.+++|+...+..+       .+|..+|+ +||+|.|++||+|+-
T Consensus        12 gh~~r~W~~a----------whp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF   81 (312)
T KOG0645|consen   12 GHKDRVWSVA----------WHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF   81 (312)
T ss_pred             CCCCcEEEEE----------eccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence            3444566655          4444 889999999999999998743222       47999999 999999999999999


Q ss_pred             CCeEEEEEccCC-CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC---CeeEEEeecccccc
Q 005459          277 RGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG---CRLMSTIRQISLSS  352 (696)
Q Consensus       277 dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~---~~~~~~l~~~~~~~  352 (696)
                      |.++.||.-.+. -+++.++.+        |...|.|++||++|++||++++|+.|-+|.+..   ..+...|++| +..
T Consensus        82 D~t~~Iw~k~~~efecv~~lEG--------HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-tqD  152 (312)
T KOG0645|consen   82 DATVVIWKKEDGEFECVATLEG--------HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQD  152 (312)
T ss_pred             cceEEEeecCCCceeEEeeeec--------cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-ccc
Confidence            999999986541 367888888        999999999999999999999999999999964   3467788888 667


Q ss_pred             eecccccCCCCCCccceecce---eeEEEcCC---CceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecC
Q 005459          353 ISSPIVKPNQDCKYEPLMSGT---SMMQWDEY---GYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGE  423 (696)
Q Consensus       353 v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~---~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~  423 (696)
                      |..+.|+|..    ..|+|++   ++++|.-+   ..++..++.+|...|+.+.|   +..+++++.|+++++|....+-
T Consensus       153 VK~V~WHPt~----dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~  228 (312)
T KOG0645|consen  153 VKHVIWHPTE----DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL  228 (312)
T ss_pred             ccEEEEcCCc----ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc
Confidence            9999999988    8899888   99999755   46789999999999988777   7789999999999999854221


Q ss_pred             CeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC----CceEecCCccceeeeE
Q 005459          424 DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ----KKWRVFGDITQEQKIQ  498 (696)
Q Consensus       424 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s----g~w~~f~~~~~e~~~~  498 (696)
                      .                        .-|.++++.++|. + -.||+||.|+.+ +|.-..    ..|+++....+.++..
T Consensus       229 ~------------------------~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~d  282 (312)
T KOG0645|consen  229 S------------------------GMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVD  282 (312)
T ss_pred             c------------------------hhcccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccc
Confidence            1                        2467889999998 4 479999999999 997665    4688776555555556


Q ss_pred             EEeEeeeC---cEEEEEEeecCCCeEEEEEeeC
Q 005459          499 SKGLLWLG---KIIVVCNYIDSSNTYELLFYPR  528 (696)
Q Consensus       499 v~~~~w~~---~~lv~~~~~~~~~~~~lr~y~~  528 (696)
                      |..+.|.+   +.|+.+     ++++++++|..
T Consensus       283 VNsV~w~p~~~~~L~s~-----~DDG~v~~W~l  310 (312)
T KOG0645|consen  283 VNSVQWNPKVSNRLASG-----GDDGIVNFWEL  310 (312)
T ss_pred             cceEEEcCCCCCceeec-----CCCceEEEEEe
Confidence            88999986   455555     55689999965

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=4e-25  Score=228.53  Aligned_cols=408  Identities=15%  Similarity=0.158  Sum_probs=271.0

Q ss_pred             cccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCCe
Q 005459           67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKH  144 (696)
Q Consensus        67 ~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~~  144 (696)
                      ...+.++.|.|.-..+..+--+|.+.|||.++...-             .+          +...+.+|.  .|....+.
T Consensus        13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmV-------------ks----------feV~~~PvRa~kfiaRknW   69 (794)
T KOG0276|consen   13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV-------------KS----------FEVSEVPVRAAKFIARKNW   69 (794)
T ss_pred             CCceeeeecCCCCceEEEeeecCeeEEEecccceee-------------ee----------eeecccchhhheeeeccce
Confidence            356789999999999999999999999999754311             00          111222232  33445678


Q ss_pred             EEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEE
Q 005459          145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF  224 (696)
Q Consensus       145 llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  224 (696)
                      +++|++|..|+++..+.....                                    .....|..+|++          +
T Consensus        70 iv~GsDD~~IrVfnynt~ekV------------------------------------~~FeAH~DyIR~----------i  103 (794)
T KOG0276|consen   70 IVTGSDDMQIRVFNYNTGEKV------------------------------------KTFEAHSDYIRS----------I  103 (794)
T ss_pred             EEEecCCceEEEEecccceee------------------------------------EEeeccccceee----------e
Confidence            999999999999876532111                                    011233445555          4


Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeec----ceecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeec
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKI----DKELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLY  298 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~----~~~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~  298 (696)
                      ++.|.--.++++++|.++++|+-...    +...||+.-|. ++||| |.+.+|++|-|+||+||++.. ..+..++.+ 
T Consensus       104 avHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~g-  181 (794)
T KOG0276|consen  104 AVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEG-  181 (794)
T ss_pred             eecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeec-
Confidence            57788888999999999999986532    22378999888 99999 688999999999999999987 677888999 


Q ss_pred             cCCCCCCCCCCeEEEEECCCC--CeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---
Q 005459          299 DWGYSMDDTGPVSCIAWTPDN--SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---  373 (696)
Q Consensus       299 ~~~~~~~h~g~V~~l~~spdg--~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---  373 (696)
                             |...|+|+.|-|-|  -+|++|++|.+++|||.++..|+.+|.|| .+.|+.+.|+|.-    ..++||+   
T Consensus       182 -------HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH-t~Nvs~v~fhp~l----piiisgsEDG  249 (794)
T KOG0276|consen  182 -------HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH-TNNVSFVFFHPEL----PIIISGSEDG  249 (794)
T ss_pred             -------cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc-cccceEEEecCCC----cEEEEecCCc
Confidence                   99999999998844  59999999999999999999999999999 7779999999987    7888998   


Q ss_pred             eeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCccee-----------
Q 005459          374 SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI-----------  439 (696)
Q Consensus       374 ~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w-----------  439 (696)
                      ++++|...++++..++.-.-+++|++..   ...++.|...+.+.+ .+-+++..+.+-.   ...+.|           
T Consensus       250 TvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~---~gKIiwa~~~ei~~~~~  325 (794)
T KOG0276|consen  250 TVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDS---NGKIIWAVHSEIQAVNL  325 (794)
T ss_pred             cEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecC---CccEEEEcCceeeeeec
Confidence            9999999999998888777788988875   333444444444322 2222221110000   001122           


Q ss_pred             EEe----------ecCeee--ecCC-CceEEEEEcCCCCEEEEEeCCccEEEEccCCceEecCCcc--------------
Q 005459          440 LHL----------NLPVSY--ISQN-WPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDIT--------------  492 (696)
Q Consensus       440 ~~~----------~~~~~~--~~~~-~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~~f~~~~--------------  492 (696)
                      ..+          ++|..-  ++.. ---..++.||+|++++++|..-.++|....=|-|.|+...              
T Consensus       326 ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~RnK~fG~~~eFvw~~dsne~avR  405 (794)
T KOG0276|consen  326 KSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRNKAFGSGLEFVWAADSNEFAVR  405 (794)
T ss_pred             eeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehhhcccccceeEEEcCCCCeEEEE
Confidence            000          011100  0100 0124578899999999988665668876443333343211              


Q ss_pred             -------------ceeeeEEE--eEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEE
Q 005459          493 -------------QEQKIQSK--GLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYIL  557 (696)
Q Consensus       493 -------------~e~~~~v~--~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ll  557 (696)
                                   ..+.+...  ..-.++..|+.++.     +..++||+-+   +..+..+.++.+.-+..+-+|+.++
T Consensus       406 es~~~vki~knfke~ksi~~~~~~e~i~gg~Llg~~s-----s~~~~fydW~---~~~lVrrI~v~~k~v~w~d~g~lVa  477 (794)
T KOG0276|consen  406 ESNGNVKIFKNFKEHKSIRPDMSAEGIFGGPLLGVRS-----SDFLCFYDWE---SGELVRRIEVTSKHVYWSDNGELVA  477 (794)
T ss_pred             ecCCceEEEecceeccccccccceeeecCCceEEEEe-----CCeEEEEEcc---cceEEEEEeeccceeEEecCCCEEE
Confidence                         01111111  11123555555532     2578888754   4445666667776677776666666


Q ss_pred             EEEcCceEEEEEE
Q 005459          558 VTYRPFDVHIFHV  570 (696)
Q Consensus       558 v~~~d~~~~l~~~  570 (696)
                      .++ |-+..++.+
T Consensus       478 i~~-d~Sfyil~~  489 (794)
T KOG0276|consen  478 IAG-DDSFYILKF  489 (794)
T ss_pred             EEe-cCceeEEEe
Confidence            644 334444444

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.95  E-value=1.6e-27  Score=235.43  Aligned_cols=277  Identities=16%  Similarity=0.186  Sum_probs=220.5

Q ss_pred             cccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--eeCCCe
Q 005459           67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKH  144 (696)
Q Consensus        67 ~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~  144 (696)
                      .-.+..|.|.|+|+.|++++..|.+.+|+..                       .+.++.....++..|+++  +.++..
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~-----------------------~fnFEtilQaHDs~Vr~m~ws~~g~w  152 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGT-----------------------SFNFETILQAHDSPVRTMKWSHNGTW  152 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCc-----------------------eeeHHHHhhhhcccceeEEEccCCCE
Confidence            3456789999999999999999999999984                       223333345666666655  667889


Q ss_pred             EEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEE
Q 005459          145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF  224 (696)
Q Consensus       145 llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  224 (696)
                      |+.|..+|.|+.  |+...+...                                  .....+...|++++         
T Consensus       153 miSgD~gG~iKy--WqpnmnnVk----------------------------------~~~ahh~eaIRdla---------  187 (464)
T KOG0284|consen  153 MISGDKGGMIKY--WQPNMNNVK----------------------------------IIQAHHAEAIRDLA---------  187 (464)
T ss_pred             EEEcCCCceEEe--cccchhhhH----------------------------------HhhHhhhhhhheec---------
Confidence            999999999987  654433211                                  01123446688866         


Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW  300 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~  300 (696)
                       |+|+...+++++.|+++++||...++.   +.||.--+. ++|+|.-.+||+|+.|..|++||.++ ++++.++.+   
T Consensus       188 -fSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~tlh~---  262 (464)
T KOG0284|consen  188 -FSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLATLHG---  262 (464)
T ss_pred             -cCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC-cchhhhhhh---
Confidence             677777888899999999999886543   478875555 99999999999999999999999998 899999999   


Q ss_pred             CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcC
Q 005459          301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDE  380 (696)
Q Consensus       301 ~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~  380 (696)
                           |+..|..+.|+|+|++|+++++|..++++|+...+.+.++++| ...|+++.++|-.    +-            
T Consensus       263 -----HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H-kkdv~~~~WhP~~----~~------------  320 (464)
T KOG0284|consen  263 -----HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH-KKDVTSLTWHPLN----ES------------  320 (464)
T ss_pred             -----ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc-hhhheeecccccc----cc------------
Confidence                 9999999999999999999999999999999987778888888 6667777777764    21            


Q ss_pred             CCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEE
Q 005459          381 YGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA  460 (696)
Q Consensus       381 ~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~  460 (696)
                                             .+.+++.|+.+..|.+...+.                   ++.--.+|...|+++++
T Consensus       321 -----------------------lftsgg~Dgsvvh~~v~~~~p-------------------~~~i~~AHd~~iwsl~~  358 (464)
T KOG0284|consen  321 -----------------------LFTSGGSDGSVVHWVVGLEEP-------------------LGEIPPAHDGEIWSLAY  358 (464)
T ss_pred             -----------------------ceeeccCCCceEEEecccccc-------------------ccCCCcccccceeeeec
Confidence                                   245678888888888763332                   23333478899999999


Q ss_pred             cCCCCEEEEEeCCccE-EEEc
Q 005459          461 SKDGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       461 s~dG~~la~ag~dG~i-~w~~  480 (696)
                      .|-|..||+|+.|.++ .|..
T Consensus       359 hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  359 HPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             cccceeEeecCCCcceeeecc
Confidence            9999999999999999 8864

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=6.5e-25  Score=229.50  Aligned_cols=323  Identities=15%  Similarity=0.124  Sum_probs=228.9

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeeccee------cCCCCeEE-EEEcC------------CCcEEEEEecCCeEEEEE
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAVC-ASIAP------------EQQILAVGTRRGVVELYD  284 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~v~-v~~sp------------~~~~la~g~~dg~v~vw~  284 (696)
                      +.|.+....+.+..+|..+.+||+.+..+.      ..|...++ +..-|            .+ -+.+++.||+||+|+
T Consensus       330 ~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~  408 (1080)
T KOG1408|consen  330 CQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLWD  408 (1080)
T ss_pred             EEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEee
Confidence            556666667777778888888998766543      33555554 43322            23 378999999999999


Q ss_pred             ccCCCceeeEEe-------eccCCC----------------------CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459          285 LAESASLIRTVS-------LYDWGY----------------------SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS  335 (696)
Q Consensus       285 ~~~~~~~~~~~~-------~~~~~~----------------------~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~  335 (696)
                      ++. +..-.+++       ..+.+|                      ..+..-.+++++.||||++||+|..-|+++|++
T Consensus       409 l~~-ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~  487 (1080)
T KOG1408|consen  409 LAF-CTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD  487 (1080)
T ss_pred             ccc-ccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence            976 21111111       111111                      113455799999999999999999999999999


Q ss_pred             ccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcC-CCceEEEEecCCcceEEEEec---c--eeee
Q 005459          336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE-YGYRLYAIEEGSSERVLIFSF---G--KCCL  406 (696)
Q Consensus       336 ~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~-~~~~l~~~~~~~~~~v~~~~~---~--~~~~  406 (696)
                      +..-+.++.+..| .+.|.++.|+... ...+.+++++   -+.++|. ..|.++.++.+|...|..+.|   +  ..++
T Consensus       488 Lq~l~~~~~~eAH-esEilcLeyS~p~-~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi  565 (1080)
T KOG1408|consen  488 LQELEYTCFMEAH-ESEILCLEYSFPV-LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI  565 (1080)
T ss_pred             ehhhhhhhheecc-cceeEEEeecCch-hhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE
Confidence            9999999999888 8889999987532 2337788888   5667887 467888899999999988888   3  6788


Q ss_pred             eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCce
Q 005459          407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW  485 (696)
Q Consensus       407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w  485 (696)
                      +++.|..+.+.......+..++.++               +-......++.+++.|.-+++++++.|..| +|++++||.
T Consensus       566 scGADksimFr~~qk~~~g~~f~r~---------------t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq  630 (1080)
T KOG1408|consen  566 SCGADKSIMFRVNQKASSGRLFPRH---------------TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ  630 (1080)
T ss_pred             eccCchhhheehhccccCceecccc---------------ccccccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence            9999998876654433332211111               111123358899999999999999999999 999999986


Q ss_pred             -EecCCc-cceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC--CCCccceeEEeecCCccEEEEccCCEEEEEEc
Q 005459          486 -RVFGDI-TQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYR  561 (696)
Q Consensus       486 -~~f~~~-~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~  561 (696)
                       |.|... .+|.+..-..+.=.+.++++.|.+     ..|.||+..  .+-.++..|.+.+..  +-+..+-.+|+.++.
T Consensus       631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd-----ktl~~~Df~sgEcvA~m~GHsE~VTG--~kF~nDCkHlISvsg  703 (1080)
T KOG1408|consen  631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSD-----KTLCFVDFVSGECVAQMTGHSEAVTG--VKFLNDCKHLISVSG  703 (1080)
T ss_pred             eeeecccccCCCceEEEEECCCccEEEEeecC-----CceEEEEeccchhhhhhcCcchheee--eeecccchhheeecC
Confidence             456543 233332222455567778777653     577787764  455567889988877  777778899999898


Q ss_pred             CceEEEEEEEE
Q 005459          562 PFDVHIFHVKL  572 (696)
Q Consensus       562 d~~~~l~~~~~  572 (696)
                      |+-|-+|.+-.
T Consensus       704 DgCIFvW~lp~  714 (1080)
T KOG1408|consen  704 DGCIFVWKLPL  714 (1080)
T ss_pred             CceEEEEECch
Confidence            99888887653

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.94  E-value=6.8e-25  Score=203.83  Aligned_cols=279  Identities=12%  Similarity=0.196  Sum_probs=211.4

Q ss_pred             EEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCC
Q 005459           33 LLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPS  111 (696)
Q Consensus        33 lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~  111 (696)
                      +||+++ |.+|++|.+. .+.....+.-      ..+.+..++..||++.||++... .||+||+.+.+..         
T Consensus        12 iLvsA~YDhTIRfWqa~-tG~C~rTiqh------~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~---------   74 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQAL-TGICSRTIQH------PDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN---------   74 (311)
T ss_pred             EEEeccCcceeeeeehh-cCeEEEEEec------CccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC---------
Confidence            788886 7899999996 5554444322      23667899999999999998754 7999999876531         


Q ss_pred             CceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcc
Q 005459          112 GLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLA  191 (696)
Q Consensus       112 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~  191 (696)
                        .+.+.    +.    ......+..|..++..|+.|+.||++++|+...  ....                        
T Consensus        75 --Pv~t~----e~----h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~--~~~q------------------------  118 (311)
T KOG0315|consen   75 --PVATF----EG----HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS--LSCQ------------------------  118 (311)
T ss_pred             --ceeEE----ec----cCCceEEEEEeecCeEEEecCCCceEEEEeccC--cccc------------------------
Confidence              11111    11    112334456788999999999999999954432  1100                        


Q ss_pred             cccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce----ecCCCCeEE-EEEcC
Q 005459          192 SVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK----ELGSGDAVC-ASIAP  266 (696)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~v~-v~~sp  266 (696)
                                 -...+.++|.++.          ..|+...++++-+++.+++||+....+    .......+. +++.|
T Consensus       119 -----------R~~~~~spVn~vv----------lhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~  177 (311)
T KOG0315|consen  119 -----------RNYQHNSPVNTVV----------LHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMP  177 (311)
T ss_pred             -----------hhccCCCCcceEE----------ecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcC
Confidence                       1123345566644          678888888888899999999875422    234445666 99999


Q ss_pred             CCcEEEEEecCCeEEEEEccCCC-----ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC-e
Q 005459          267 EQQILAVGTRRGVVELYDLAESA-----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-R  340 (696)
Q Consensus       267 ~~~~la~g~~dg~v~vw~~~~~~-----~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~-~  340 (696)
                      ||++++.+..-|+..+|++-...     .++..++.        |++-+..+.+|||+++||+++.|++++||++.+. +
T Consensus       178 dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a--------h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k  249 (311)
T KOG0315|consen  178 DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA--------HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK  249 (311)
T ss_pred             CCcEEEEecCCccEEEEEccCCCccccceEhhheec--------ccceEEEEEECCCCcEEEeecCCceEEEEecCCcee
Confidence            99999999999999999986521     23444555        9999999999999999999999999999999988 6


Q ss_pred             eEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEE
Q 005459          341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI  398 (696)
Q Consensus       341 ~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~  398 (696)
                      +...+++| +..+..++||.++    +++++|+   ..++|++..++.+....+|....++
T Consensus       250 le~~l~gh-~rWvWdc~FS~dg----~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc  305 (311)
T KOG0315|consen  250 LELVLTGH-QRWVWDCAFSADG----EYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVC  305 (311)
T ss_pred             eEEEeecC-CceEEeeeeccCc----cEEEecCCCCceeecccccCceeeecCCcccccEE
Confidence            66777777 7899999999999    9999998   8999999999999999888765543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.6e-25  Score=231.48  Aligned_cols=350  Identities=13%  Similarity=0.119  Sum_probs=261.6

Q ss_pred             cceeEEEee--eCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCc
Q 005459          131 KGLSVSNIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPIS  208 (696)
Q Consensus       131 ~~~~v~~~~--~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~  208 (696)
                      +...|.++.  |..-.++++..+|.+.+|+.+.+..                                            
T Consensus        12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm--------------------------------------------   47 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM--------------------------------------------   47 (794)
T ss_pred             cCCceeeeecCCCCceEEEeeecCeeEEEeccccee--------------------------------------------
Confidence            444565554  4446799999999999965543221                                            


Q ss_pred             ccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEE
Q 005459          209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYD  284 (696)
Q Consensus       209 ~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~  284 (696)
                        +++++.+......+.|-+.-+.++++++|..+++.+..+.++.   ..|.+-++ ++++|...++.+++.|-+|++||
T Consensus        48 --VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~  125 (794)
T KOG0276|consen   48 --VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWD  125 (794)
T ss_pred             --eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEee
Confidence              3333333333334556677788999999999999998887664   57899888 99999999999999999999999


Q ss_pred             ccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCC
Q 005459          285 LAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD  363 (696)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~  363 (696)
                      .+..-.+.+++.+        |+--|.+++|.| |.+.+||++-|+||+||++....+..||++| ...|+++.+-+-+ 
T Consensus       126 we~~wa~~qtfeG--------H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~~g-  195 (794)
T KOG0276|consen  126 WENEWACEQTFEG--------HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGH-EKGVNCVDYYTGG-  195 (794)
T ss_pred             ccCceeeeeEEcC--------cceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecc-ccCcceEEeccCC-
Confidence            9987788999999        999999999999 8899999999999999999999999999998 8889999998876 


Q ss_pred             CCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcc
Q 005459          364 CKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL  437 (696)
Q Consensus       364 ~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~  437 (696)
                       .+.+++||.   ++++||..+..++.+++||...|  ..|.+ -..++||+.||++++|.-.+-..             
T Consensus       196 -dkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l-------------  261 (794)
T KOG0276|consen  196 -DKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL-------------  261 (794)
T ss_pred             -CcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh-------------
Confidence             346788888   99999999999999999999998  55666 66789999999999998654332             


Q ss_pred             eeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceEecCCccceeeeEEE-eEeeeCcEEEEEEeec
Q 005459          438 KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSK-GLLWLGKIIVVCNYID  516 (696)
Q Consensus       438 ~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~~f~~~~~e~~~~v~-~~~w~~~~lv~~~~~~  516 (696)
                             -.++.-.-..|++++-.+.++.+|+|...|.+..++-        .+...-.+... .+.|..+.-|.+....
T Consensus       262 -------E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lg--------reeP~vsMd~~gKIiwa~~~ei~~~~~k  326 (794)
T KOG0276|consen  262 -------EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLG--------REEPAVSMDSNGKIIWAVHSEIQAVNLK  326 (794)
T ss_pred             -------hhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEcc--------CCCCceeecCCccEEEEcCceeeeeece
Confidence                   2233334457999999999999999999999865542        22233334444 4889765444432211


Q ss_pred             C-CCeEEEEEeeCC--CCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEE
Q 005459          517 S-SNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFH  569 (696)
Q Consensus       517 ~-~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~  569 (696)
                      . ....++.  +-+  +|.-.-+. ..++..+.+..+|+|.+++| |.|++.+||.
T Consensus       327 s~~~~~ev~--DgErL~LsvKeLg-s~eiyPq~L~hsPNGrfV~V-cgdGEyiIyT  378 (794)
T KOG0276|consen  327 SVGAQKEVT--DGERLPLSVKELG-SVEIYPQTLAHSPNGRFVVV-CGDGEYIIYT  378 (794)
T ss_pred             eccCccccc--CCccccchhhhcc-ccccchHHhccCCCCcEEEE-ecCccEEEEE
Confidence            1 1111221  111  22211122 22344557899999998888 7799999995

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.94  E-value=6.7e-25  Score=220.56  Aligned_cols=316  Identities=15%  Similarity=0.200  Sum_probs=214.4

Q ss_pred             CceEEEEEeCCc-EEEEE-ccCeEEEeecCCceeeEEEe---ecCh-----HHHhhcccccEEEEcCCCcEEEEEecCcE
Q 005459           21 SQQIIYFKVNNG-LLLIA-SPCHIELWSSSQHKVRLGKY---KRDS-----ESVQREGENLQAVWSPDTKLIAVVTSSLY   90 (696)
Q Consensus        21 ~~~~v~fs~dg~-lla~~-~~~~v~iW~~~~~~~~l~~~---~r~~-----~sl~~~G~~~~v~wsPDg~~lav~t~dg~   90 (696)
                      ++-+-+.+|-.. +||+. .+.+-++|+.. ...-.+..   -|..     ++....-.+++++|+.||+.||++..+|.
T Consensus       180 ~V~~~~WnP~~~~llasg~~~s~ari~~l~-e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~  258 (524)
T KOG0273|consen  180 EVFICAWNPLRDGLLASGSGDSTARIWNLL-ENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGE  258 (524)
T ss_pred             ceEEEecCchhhhhhhccCCccceeeeeeh-hhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcE
Confidence            444556677766 88887 46789999985 21111100   1111     12222346789999999999999999999


Q ss_pred             EEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeee--CCCeEEEEecCCcEEEEecCCcccccee
Q 005459           91 LHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS--DNKHMLLGLSDGSLYSISWKGEFYGAFE  168 (696)
Q Consensus        91 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~--~~~~llv~t~~g~i~~~~w~~~~~~~~~  168 (696)
                      +|||+........                        +..+.++|.++-.  .+.+|+.++.|+++.+  ||.......+
T Consensus       259 ~riw~~~G~l~~t------------------------l~~HkgPI~slKWnk~G~yilS~~vD~ttil--wd~~~g~~~q  312 (524)
T KOG0273|consen  259 ARIWNKDGNLIST------------------------LGQHKGPIFSLKWNKKGTYILSGGVDGTTIL--WDAHTGTVKQ  312 (524)
T ss_pred             EEEEecCchhhhh------------------------hhccCCceEEEEEcCCCCEEEeccCCccEEE--EeccCceEEE
Confidence            9999987433211                        1233445555543  4578999999999977  6643332211


Q ss_pred             eccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeee
Q 005459          169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI  248 (696)
Q Consensus       169 ~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~  248 (696)
                      .                                  ...+.....+++|-.. ..|+.-++||.+.++-...        .
T Consensus       313 ~----------------------------------f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~--------~  349 (524)
T KOG0273|consen  313 Q----------------------------------FEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGE--------D  349 (524)
T ss_pred             e----------------------------------eeeccCCccceEEecC-ceEeecCCCceEEEEEecC--------C
Confidence            0                                  0001111122232111 1223344566555543322        1


Q ss_pred             ecc-eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCC-------
Q 005459          249 KID-KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-------  319 (696)
Q Consensus       249 ~~~-~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg-------  319 (696)
                      .|. ...+|.+.|. +.|+|.+.+||+++.|+|+++|+... ....+.++.        |+..|..+.|||+|       
T Consensus       350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~--------Hskei~t~~wsp~g~v~~n~~  420 (524)
T KOG0273|consen  350 RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQA--------HSKEIYTIKWSPTGPVTSNPN  420 (524)
T ss_pred             CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC-Ccchhhhhh--------hccceeeEeecCCCCccCCCc
Confidence            221 2367888887 99999999999999999999999887 677888888        99999999999975       


Q ss_pred             --CeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcc
Q 005459          320 --SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE  394 (696)
Q Consensus       320 --~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~  394 (696)
                        ..|++++.|++|++||+..+.++++|..| ..+|.+++|+|++    +++++|+   .+.+|+...++++...     
T Consensus       421 ~~~~l~sas~dstV~lwdv~~gv~i~~f~kH-~~pVysvafS~~g----~ylAsGs~dg~V~iws~~~~~l~~s~-----  490 (524)
T KOG0273|consen  421 MNLMLASASFDSTVKLWDVESGVPIHTLMKH-QEPVYSVAFSPNG----RYLASGSLDGCVHIWSTKTGKLVKSY-----  490 (524)
T ss_pred             CCceEEEeecCCeEEEEEccCCceeEeeccC-CCceEEEEecCCC----cEEEecCCCCeeEeccccchheeEee-----
Confidence              48999999999999999999999999888 7889999999998    6666554   4445555444444333     


Q ss_pred             eEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCc
Q 005459          395 RVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG  474 (696)
Q Consensus       395 ~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG  474 (696)
                                                                            .+ +.-|..++|+.+|.+|..+-.||
T Consensus       491 ------------------------------------------------------~~-~~~Ifel~Wn~~G~kl~~~~sd~  515 (524)
T KOG0273|consen  491 ------------------------------------------------------QG-TGGIFELCWNAAGDKLGACASDG  515 (524)
T ss_pred             ------------------------------------------------------cC-CCeEEEEEEcCCCCEEEEEecCC
Confidence                                                                  22 23378888999998888888888


Q ss_pred             cE-EEEc
Q 005459          475 LI-LYDI  480 (696)
Q Consensus       475 ~i-~w~~  480 (696)
                      .+ +-|+
T Consensus       516 ~vcvldl  522 (524)
T KOG0273|consen  516 SVCVLDL  522 (524)
T ss_pred             CceEEEe
Confidence            88 7665

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.94  E-value=2.4e-25  Score=206.78  Aligned_cols=225  Identities=16%  Similarity=0.193  Sum_probs=182.6

Q ss_pred             EEeCCcEEEEeeccCCceeeeeeecce-----ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      ++||++.+++++.. .++++|+.....     ..+|.+-|. +.|..+|+.+.+|++||++||||++. ...-+.++   
T Consensus        48 iTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-~~~qR~~~---  122 (311)
T KOG0315|consen   48 ITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-LSCQRNYQ---  122 (311)
T ss_pred             EcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC-cccchhcc---
Confidence            89999998877654 488998875433     267876676 99999999999999999999999987 44433333   


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM  376 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~  376 (696)
                            |..+|+++...|+...|++|..+|.|++||+....+.+.+--.-...|+++...|++    ..++.+-   +..
T Consensus       123 ------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg----sml~a~nnkG~cy  192 (311)
T KOG0315|consen  123 ------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG----SMLAAANNKGNCY  192 (311)
T ss_pred             ------CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC----cEEEEecCCccEE
Confidence                  789999999999999999999999999999998877777654335679999999998    7666554   889


Q ss_pred             EEcCCCce------EEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCee
Q 005459          377 QWDEYGYR------LYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS  447 (696)
Q Consensus       377 ~W~~~~~~------l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  447 (696)
                      +|+.-+.+      .+..++.|...+  ..+++ +|.+++++.|.++++|....- -                  +.-..
T Consensus       193 vW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~------------------kle~~  253 (311)
T KOG0315|consen  193 VWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-F------------------KLELV  253 (311)
T ss_pred             EEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-e------------------eeEEE
Confidence            99886532      233455677777  56777 999999999999999986543 1                  12346


Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       448 ~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                      +.+|+..++.++||.||+||++|+.|+.+ +|++..++
T Consensus       254 l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  254 LTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK  291 (311)
T ss_pred             eecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence            67899999999999999999999999999 99999886

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=5.1e-25  Score=241.02  Aligned_cols=268  Identities=15%  Similarity=0.220  Sum_probs=218.6

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecc-----eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKID-----KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL  297 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~  297 (696)
                      +.|++||+.++.++.++.+++|+....+     .+.+|...+. ++|+|+++++++|+.|++|++||+...+..++++++
T Consensus       165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g  244 (456)
T KOG0266|consen  165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG  244 (456)
T ss_pred             EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence            5699999999999999999999984433     1257888888 999999999999999999999999554688999999


Q ss_pred             ccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---e
Q 005459          298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S  374 (696)
Q Consensus       298 ~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~  374 (696)
                              |+..|++++|+|+|+.+++|+.|++|++||+.++.+...|.+| ...|++++|++++    ..+++++   .
T Consensus       245 --------H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h-s~~is~~~f~~d~----~~l~s~s~d~~  311 (456)
T KOG0266|consen  245 --------HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH-SDGISGLAFSPDG----NLLVSASYDGT  311 (456)
T ss_pred             --------CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc-CCceEEEEECCCC----CEEEEcCCCcc
Confidence                    9999999999999999999999999999999999999999999 7789999999999    8888887   8


Q ss_pred             eEEEcCCCce--EEEEecCCcce--E--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCee
Q 005459          375 MMQWDEYGYR--LYAIEEGSSER--V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS  447 (696)
Q Consensus       375 ~~~W~~~~~~--l~~~~~~~~~~--v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  447 (696)
                      +++||..+++  +.....++...  +  ++|++ ++.++++..|+++++|++..+..                    +..
T Consensus       312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~--------------------~~~  371 (456)
T KOG0266|consen  312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS--------------------VGT  371 (456)
T ss_pred             EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc--------------------eee
Confidence            9999999999  45555555444  4  66666 99999999999999999887765                    667


Q ss_pred             eecCCC---ceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC--cEEEEEEeecCCCeE
Q 005459          448 YISQNW---PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTY  521 (696)
Q Consensus       448 ~~~~~~---~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~  521 (696)
                      |.+|+.   .+.+...+++|+++.+|+.|+.+ +|+..++.-.... +.+ ..-.+..+.|..  ++++.+.   ...+.
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l-~~h-~~~~~~~~~~~~~~~~~~s~s---~~~d~  446 (456)
T KOG0266|consen  372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL-EGH-SKAAVSDLSSHPTENLIASSS---FEGDG  446 (456)
T ss_pred             ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh-cCC-CCCceeccccCCCcCeeeecC---cCCCc
Confidence            777765   45566678999999999999999 9999986422211 111 122355788864  3444431   23567


Q ss_pred             EEEEeeCC
Q 005459          522 ELLFYPRY  529 (696)
Q Consensus       522 ~lr~y~~~  529 (696)
                      .+++|..+
T Consensus       447 ~~~~w~~~  454 (456)
T KOG0266|consen  447 LIRLWKYD  454 (456)
T ss_pred             eEEEecCC
Confidence            89999764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.94  E-value=2.7e-24  Score=210.10  Aligned_cols=316  Identities=13%  Similarity=0.150  Sum_probs=238.6

Q ss_pred             CCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459           20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI   98 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~   98 (696)
                      ++...|+++|+.+++|++ .|+.-.||+.. .+..++.+...      ...++++.||.||.+||++.-+|.|+||++.+
T Consensus        65 ~svFavsl~P~~~l~aTGGgDD~AflW~~~-~ge~~~eltgH------KDSVt~~~FshdgtlLATGdmsG~v~v~~~st  137 (399)
T KOG0296|consen   65 DSVFAVSLHPNNNLVATGGGDDLAFLWDIS-TGEFAGELTGH------KDSVTCCSFSHDGTLLATGDMSGKVLVFKVST  137 (399)
T ss_pred             CceEEEEeCCCCceEEecCCCceEEEEEcc-CCcceeEecCC------CCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence            466678899999999998 57789999997 55666655433      34578999999999999999999999999975


Q ss_pred             cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcc
Q 005459           99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV  178 (696)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~  178 (696)
                      +..+..+                 .    ....+                                              
T Consensus       138 g~~~~~~-----------------~----~e~~d----------------------------------------------  150 (399)
T KOG0296|consen  138 GGEQWKL-----------------D----QEVED----------------------------------------------  150 (399)
T ss_pred             CceEEEe-----------------e----cccCc----------------------------------------------
Confidence            5321100                 0    00000                                              


Q ss_pred             cccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeec---ceecC
Q 005459          179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI---DKELG  255 (696)
Q Consensus       179 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~---~~~~~  255 (696)
                                                      |.-|.          +.|-+.+++.++.|+.+..|.+...   +...|
T Consensus       151 --------------------------------ieWl~----------WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G  188 (399)
T KOG0296|consen  151 --------------------------------IEWLK----------WHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG  188 (399)
T ss_pred             --------------------------------eEEEE----------ecccccEEEeecCCCcEEEEECCCcceeeEecC
Confidence                                            11112          2344555555555555555655441   12357


Q ss_pred             CCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459          256 SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW  334 (696)
Q Consensus       256 ~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW  334 (696)
                      |+.... =.|.|+|+.+++|..||+|++|+..+ +.++..+...       ..++..+++++.+|..+.+|..++.+.+-
T Consensus       189 h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt-g~p~~~~~~~-------e~~~~~~~~~~~~~~~~~~g~~e~~~~~~  260 (399)
T KOG0296|consen  189 HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT-GQPLHKITQA-------EGLELPCISLNLAGSTLTKGNSEGVACGV  260 (399)
T ss_pred             CCCCcccccccCCCceEEEEecCceEEEEecCC-CceeEEeccc-------ccCcCCccccccccceeEeccCCccEEEE
Confidence            765554 78999999999999999999999998 7888877752       35678899999999999999999999999


Q ss_pred             EccCCeeEEEeec-------ccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec--c
Q 005459          335 SVSGCRLMSTIRQ-------ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--G  402 (696)
Q Consensus       335 ~~~~~~~~~~l~~-------~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~--~  402 (696)
                      +..+++.+....+       .....+.++.+.|.. .+....+.|+   ++.+||....++.... .|...|+.+.+  .
T Consensus       261 ~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s-s~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~t  338 (399)
T KOG0296|consen  261 NNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS-SKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLNT  338 (399)
T ss_pred             ccccceEEEecCCCCccccccchhhhhhhhhcccc-cccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcCc
Confidence            9888887766652       123445566665542 2335666776   9999999887776666 56778888777  5


Q ss_pred             eeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459          403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR  481 (696)
Q Consensus       403 ~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~  481 (696)
                      +.+++++.++.++.||.++|..                    ..+|.+|+.+|.+.+++|++++++++|.|+++ +|++.
T Consensus       339 ~~l~t~c~~g~v~~wDaRtG~l--------------------~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  339 DYLLTACANGKVRQWDARTGQL--------------------KFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             chheeeccCceEEeeeccccce--------------------EEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            8999999999999999998876                    67899999999999999999999999999999 98764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.93  E-value=2.7e-24  Score=210.14  Aligned_cols=311  Identities=14%  Similarity=0.206  Sum_probs=235.6

Q ss_pred             EEEEEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeec
Q 005459          223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY  298 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~  298 (696)
                      ++...|+-+++++++.|....+|+..+++.   +.+|.+.|. +.||.||.+||+|..+|.|+||...+ +.....+.. 
T Consensus        69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st-g~~~~~~~~-  146 (399)
T KOG0296|consen   69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST-GGEQWKLDQ-  146 (399)
T ss_pred             EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc-CceEEEeec-
Confidence            345677788888888888888999887753   278998887 99999999999999999999999998 554444543 


Q ss_pred             cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---ee
Q 005459          299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM  375 (696)
Q Consensus       299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~  375 (696)
                             .-+.+.-|.|.|-+..|++|+.||.+.+|.+..+...+.+.|| ..++++-.|.|+|    +.+++|.   ++
T Consensus       147 -------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh-~~~ct~G~f~pdG----Kr~~tgy~dgti  214 (399)
T KOG0296|consen  147 -------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH-NSPCTCGEFIPDG----KRILTGYDDGTI  214 (399)
T ss_pred             -------ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCC-CCCcccccccCCC----ceEEEEecCceE
Confidence                   4567888999999999999999999999999998788888888 7789999999999    8888887   99


Q ss_pred             EEEcCCCceEEEEecCCcce-E--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecC
Q 005459          376 MQWDEYGYRLYAIEEGSSER-V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ  451 (696)
Q Consensus       376 ~~W~~~~~~l~~~~~~~~~~-v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  451 (696)
                      ++|++.+++.+....+.... .  ..+.. +..+++++.++..++-...  ..++....-..          .|.....+
T Consensus       215 ~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~--sgKVv~~~n~~----------~~~l~~~~  282 (399)
T KOG0296|consen  215 IVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNG--SGKVVNCNNGT----------VPELKPSQ  282 (399)
T ss_pred             EEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccc--cceEEEecCCC----------Cccccccc
Confidence            99999999988877643322 2  33433 6677888888877663322  22222111101          12222223


Q ss_pred             C---CceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC-cEEEEEEeecCCCeEEEEEe
Q 005459          452 N---WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG-KIIVVCNYIDSSNTYELLFY  526 (696)
Q Consensus       452 ~---~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~-~~lv~~~~~~~~~~~~lr~y  526 (696)
                      .   ..|.++.+|.+=...|+|+-||++ +||..+.+.|.    ..|++-.|..+.|.+ ++|.++|.+     ..+|.|
T Consensus       283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~----~c~he~~V~~l~w~~t~~l~t~c~~-----g~v~~w  353 (399)
T KOG0296|consen  283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH----ICEHEDGVTKLKWLNTDYLLTACAN-----GKVRQW  353 (399)
T ss_pred             hhhhhhhhhcccccccchhhcccccceEEEEecccchhhe----eccCCCceEEEEEcCcchheeeccC-----ceEEee
Confidence            2   346666777777899999999999 99998865443    223333488999988 899998765     689999


Q ss_pred             eCC--CCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEE
Q 005459          527 PRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHV  570 (696)
Q Consensus       527 ~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~  570 (696)
                      +..  +|-..+..|...+..  +++++..+.+++++.|+..++|.+
T Consensus       354 DaRtG~l~~~y~GH~~~Il~--f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  354 DARTGQLKFTYTGHQMGILD--FALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             eccccceEEEEecCchheeE--EEEcCCCcEEEEecCCCeEEEEec
Confidence            975  555555666665555  778889999999999999999975

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=9.2e-25  Score=238.99  Aligned_cols=269  Identities=17%  Similarity=0.250  Sum_probs=223.1

Q ss_pred             EEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEE
Q 005459          136 SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE  215 (696)
Q Consensus       136 ~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~  215 (696)
                      ..|+++++.++.++.++.++.+.+..... ..           +                      ..+.++...|.++.
T Consensus       165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~-----------~----------------------~~l~~h~~~v~~~~  210 (456)
T KOG0266|consen  165 VDFSPDGRALAAASSDGLIRIWKLEGIKS-NL-----------L----------------------RELSGHTRGVSDVA  210 (456)
T ss_pred             EEEcCCCCeEEEccCCCcEEEeecccccc-hh-----------h----------------------ccccccccceeeeE
Confidence            35688899988899999998865532210 00           0                      11234555676654


Q ss_pred             EccCcceEEEEEeCCcEEEEeeccCCceeeeeeec----ceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCc
Q 005459          216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI----DKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESAS  290 (696)
Q Consensus       216 ~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~----~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~  290 (696)
                                |+|||+++++++.|+++++||....    +.+.+|...+. ++|+|+++++++|+.|++|++||+++ ++
T Consensus       211 ----------fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~  279 (456)
T KOG0266|consen  211 ----------FSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GE  279 (456)
T ss_pred             ----------ECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-Ce
Confidence                      8999999999999999999999433    23379999888 99999999999999999999999998 89


Q ss_pred             eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe--eEEEeeccccc-ceecccccCCCCCCcc
Q 005459          291 LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISLS-SISSPIVKPNQDCKYE  367 (696)
Q Consensus       291 ~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~--~~~~l~~~~~~-~v~~~~~sp~~~~~~~  367 (696)
                      +++.+.+        |.++|++++|++||+.|++++.|+.|++||+.++.  +..++.++... .++++.|+|++    +
T Consensus       280 ~~~~l~~--------hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~----~  347 (456)
T KOG0266|consen  280 CVRKLKG--------HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG----K  347 (456)
T ss_pred             EEEeeec--------cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC----c
Confidence            9999999        99999999999999999999999999999999998  66788776344 69999999999    8


Q ss_pred             ceecce---eeEEEcCCCceEEEEecCCcceE---EEE--ec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcce
Q 005459          368 PLMSGT---SMMQWDEYGYRLYAIEEGSSERV---LIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK  438 (696)
Q Consensus       368 ~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v---~~~--~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~  438 (696)
                      +++++.   .+++|+...+.......+|...+   ...  .. ++.+++++.|+.+.+|++..+..              
T Consensus       348 ~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~--------------  413 (456)
T KOG0266|consen  348 YLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI--------------  413 (456)
T ss_pred             EEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccch--------------
Confidence            888776   89999999999999988887753   122  22 88999999999999999887554              


Q ss_pred             eEEeecCeeeecC-CCceEEEEEcCCCCEEEEEe--CCccE-EEEcc
Q 005459          439 ILHLNLPVSYISQ-NWPVQHVAASKDGMFLAVAG--LHGLI-LYDIR  481 (696)
Q Consensus       439 w~~~~~~~~~~~~-~~~I~~va~s~dG~~la~ag--~dG~i-~w~~~  481 (696)
                            ...+.+| ..++..++++|...++++++  .|+.+ +|...
T Consensus       414 ------~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  414 ------LQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ------hhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence                  5677888 88999999999999999999  78889 98653

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.93  E-value=1.1e-24  Score=211.81  Aligned_cols=276  Identities=11%  Similarity=0.159  Sum_probs=224.4

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEE
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT  332 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~  332 (696)
                      .+|.+.|. +++.|-..++|+|+.|++|+|||+.+ +.+..++.+        |...|..+++|+---+|+++++|+.|+
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltG--------hi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTG--------HIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecc--------hhheeeeeeecccCceEEEecCCCeeE
Confidence            68999998 99999999999999999999999999 899999999        999999999999999999999999999


Q ss_pred             EEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeee
Q 005459          333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCL  406 (696)
Q Consensus       333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~  406 (696)
                      .||+...+.+....|| .+.|.+++.+|..    +.+++|+   ++++||.++..-+.++.||...|  +.+.+ .-+++
T Consensus       219 CwDLe~nkvIR~YhGH-lS~V~~L~lhPTl----dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi  293 (460)
T KOG0285|consen  219 CWDLEYNKVIRHYHGH-LSGVYCLDLHPTL----DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI  293 (460)
T ss_pred             EEechhhhhHHHhccc-cceeEEEeccccc----eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence            9999999999999888 8899999999988    8888887   89999999999999999999998  34444 77899


Q ss_pred             eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceE
Q 005459          407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR  486 (696)
Q Consensus       407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~  486 (696)
                      |++.|+++++||+..+..                    ..++..|+-.|++++..|....+|+||.|..-.|++..|.. 
T Consensus       294 t~S~D~tvrlWDl~agkt--------------------~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f-  352 (460)
T KOG0285|consen  294 TGSHDSTVRLWDLRAGKT--------------------MITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEF-  352 (460)
T ss_pred             EecCCceEEEeeeccCce--------------------eEeeecccceeeEEecCCchhhhhccCCccceeccCCccch-
Confidence            999999999999998887                    45778899999999999999999999999877999888752 


Q ss_pred             ecCCccceeeeEEEeEeeeC-cEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCc-----cE---EEEccCCEEE
Q 005459          487 VFGDITQEQKIQSKGLLWLG-KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAK-----PI---VMDVYEDYIL  557 (696)
Q Consensus       487 ~f~~~~~e~~~~v~~~~w~~-~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~-----~l---~~~~~~~~ll  557 (696)
                       ..+. .++.-.+..|.-+. ++++++     ++...|-+|+-..--+-+.+++..-|..     -+   .++-.+-.|+
T Consensus       353 -~~nl-sgh~~iintl~~nsD~v~~~G-----~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli  425 (460)
T KOG0285|consen  353 -LQNL-SGHNAIINTLSVNSDGVLVSG-----GDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI  425 (460)
T ss_pred             -hhcc-ccccceeeeeeeccCceEEEc-----CCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence             2332 22333345677765 455555     4557899998752222222222212211     12   2233567789


Q ss_pred             EEEcCceEEEEEEE
Q 005459          558 VTYRPFDVHIFHVK  571 (696)
Q Consensus       558 v~~~d~~~~l~~~~  571 (696)
                      ++-+|+.|.+|+-+
T Consensus       426 t~eadKtIk~~keD  439 (460)
T KOG0285|consen  426 TGEADKTIKMYKED  439 (460)
T ss_pred             eccCCcceEEEecc
Confidence            99999999999743

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.93  E-value=9.6e-26  Score=218.09  Aligned_cols=272  Identities=14%  Similarity=0.208  Sum_probs=221.0

Q ss_pred             ceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccE
Q 005459          132 GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI  211 (696)
Q Consensus       132 ~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i  211 (696)
                      ..+|.|+..|.+.|+.|..|.+|.+  ||.....                                  ....+.+|.+.|
T Consensus       197 skgVYClQYDD~kiVSGlrDnTiki--WD~n~~~----------------------------------c~~~L~GHtGSV  240 (499)
T KOG0281|consen  197 SKGVYCLQYDDEKIVSGLRDNTIKI--WDKNSLE----------------------------------CLKILTGHTGSV  240 (499)
T ss_pred             CCceEEEEecchhhhcccccCceEE--eccccHH----------------------------------HHHhhhcCCCcE
Confidence            4578999999999999999999998  5543321                                  112455777788


Q ss_pred             EEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccC
Q 005459          212 IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE  287 (696)
Q Consensus       212 ~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~  287 (696)
                      .++.|            |.+++++++.|.|+++||..+++.+   .+|.+++- +.|+.  .++++++.|.+++|||+..
T Consensus       241 LCLqy------------d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~s  306 (499)
T KOG0281|consen  241 LCLQY------------DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMAS  306 (499)
T ss_pred             Eeeec------------cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccC
Confidence            87764            4568899999999999999998765   67888887 88885  5799999999999999987


Q ss_pred             CC--ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCC
Q 005459          288 SA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK  365 (696)
Q Consensus       288 ~~--~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~  365 (696)
                      +.  .+.+.+.+        |..+|+.+.|+.  +++++++.|+++++|++.++.++.++.+| ...|.++.+  .+   
T Consensus       307 ps~it~rrVLvG--------HrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gH-kRGIAClQY--r~---  370 (499)
T KOG0281|consen  307 PTDITLRRVLVG--------HRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGH-KRGIACLQY--RD---  370 (499)
T ss_pred             chHHHHHHHHhh--------hhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcc-cccceehhc--cC---
Confidence            43  23456677        999999999964  59999999999999999999999999999 666776665  33   


Q ss_pred             ccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEE
Q 005459          366 YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH  441 (696)
Q Consensus       366 ~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~  441 (696)
                       +.++||+   ++++|+.+.|.++..++||.+-|-++.| .+.+++|++||++++|++..+.+.-....           
T Consensus       371 -rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~-----------  438 (499)
T KOG0281|consen  371 -RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPAS-----------  438 (499)
T ss_pred             -eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCccccc-----------
Confidence             7889998   9999999999999999999999988888 88999999999999999988876100000           


Q ss_pred             eecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC
Q 005459          442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK  483 (696)
Q Consensus       442 ~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg  483 (696)
                      .-+..+...|.+.|.-+.|  |...+++.+.|.+| +||...+
T Consensus       439 ~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  439 TLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             chHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence            0012244578889998888  55789999999999 9998765

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=5.7e-25  Score=214.62  Aligned_cols=263  Identities=13%  Similarity=0.108  Sum_probs=218.4

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      +.+.|+-.+.++++.|.+++.||..+++..   .||.+++. ++|+..|++||+++.|-.+++||.++..++++.+.+  
T Consensus       114 v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g--  191 (406)
T KOG0295|consen  114 VIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG--  191 (406)
T ss_pred             eeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcC--
Confidence            446777778888889999999999887653   79999998 999999999999999999999999875577788888  


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM  376 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~  376 (696)
                            |.-.|.+++|-|-|.+++|++.|.+|+.|++.++.++.++.+| ...|..++...|+    ..+++++   ++.
T Consensus       192 ------h~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h-~ewvr~v~v~~DG----ti~As~s~dqtl~  260 (406)
T KOG0295|consen  192 ------HEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH-SEWVRMVRVNQDG----TIIASCSNDQTLR  260 (406)
T ss_pred             ------cccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc-hHhEEEEEecCCe----eEEEecCCCceEE
Confidence                  8999999999999999999999999999999999999999999 6689999998888    8888887   899


Q ss_pred             EEcCCCceEEEEecCCcceE--EEEec-----------c-----eeeeeccCCCCceeeeeeecCCeEEEEecCCCCcce
Q 005459          377 QWDEYGYRLYAIEEGSSERV--LIFSF-----------G-----KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK  438 (696)
Q Consensus       377 ~W~~~~~~l~~~~~~~~~~v--~~~~~-----------~-----~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~  438 (696)
                      +|-.++.++...+..|.-.|  +++.+           +     ..+.+++.|+++++|++.++..              
T Consensus       261 vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c--------------  326 (406)
T KOG0295|consen  261 VWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC--------------  326 (406)
T ss_pred             EEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE--------------
Confidence            99999998877777776665  33322           2     4788999999999999988864              


Q ss_pred             eEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC--cEEEEEEee
Q 005459          439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYI  515 (696)
Q Consensus       439 w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~  515 (696)
                            ..++.+|...|+.++|+|-|+||++..+|+++ +||+++++...-.+ .+|  ..|..+..++  .+++++   
T Consensus       327 ------L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah~--hfvt~lDfh~~~p~VvTG---  394 (406)
T KOG0295|consen  327 ------LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-AHE--HFVTSLDFHKTAPYVVTG---  394 (406)
T ss_pred             ------EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-CCc--ceeEEEecCCCCceEEec---
Confidence                  66888999999999999999999999999999 99999987543222 333  3466666664  455554   


Q ss_pred             cCCCeEEEEEee
Q 005459          516 DSSNTYELLFYP  527 (696)
Q Consensus       516 ~~~~~~~lr~y~  527 (696)
                        +-+...++|.
T Consensus       395 --sVdqt~KvwE  404 (406)
T KOG0295|consen  395 --SVDQTVKVWE  404 (406)
T ss_pred             --cccceeeeee
Confidence              2334566664

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.92  E-value=3.9e-25  Score=213.87  Aligned_cols=257  Identities=11%  Similarity=0.156  Sum_probs=212.1

Q ss_pred             EEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG  301 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~  301 (696)
                      +-=|...++++..|.|+++||....++.   .||.+.+- +.|  +.++|++|+.|.+|+|||+++ +++++++-.    
T Consensus       203 lQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~t-ge~l~tlih----  275 (499)
T KOG0281|consen  203 LQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNT-GEPLNTLIH----  275 (499)
T ss_pred             EEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccC-CchhhHHhh----
Confidence            3345566888999999999998776543   78988774 665  456999999999999999999 899999988    


Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe---eEEEeecccccceecccccCCCCCCccceecce---ee
Q 005459          302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM  375 (696)
Q Consensus       302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~---~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~  375 (696)
                          |...|..+.|+.  .++++++.|++++|||+....   +...|.|| ...|+.+.|+  .    +++++++   ++
T Consensus       276 ----HceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGH-rAaVNvVdfd--~----kyIVsASgDRTi  342 (499)
T KOG0281|consen  276 ----HCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDFD--D----KYIVSASGDRTI  342 (499)
T ss_pred             ----hcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhh-hhheeeeccc--c----ceEEEecCCceE
Confidence                999999999984  489999999999999997653   45667788 7889999883  3    5677666   99


Q ss_pred             EEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCc
Q 005459          376 MQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP  454 (696)
Q Consensus       376 ~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  454 (696)
                      ++|+..+++.+.++.+|...|.++.+ ++.+++|+.|.++++|++..|..                    ...+.||..-
T Consensus       343 kvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~c--------------------LRvLeGHEeL  402 (499)
T KOG0281|consen  343 KVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC--------------------LRVLEGHEEL  402 (499)
T ss_pred             EEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHH--------------------HHHHhchHHh
Confidence            99999999999999999999999999 99999999999999999988875                    6678899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCccE-EEEccCCceEe------cCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEee
Q 005459          455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV------FGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYP  527 (696)
Q Consensus       455 I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~------f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~  527 (696)
                      |+++.|  |.+.+++|+-||.+ +||+.++.-..      .-....|+...|.++.+..--+|++     +.+.+|-+|+
T Consensus       403 vRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvss-----sHddtILiWd  475 (499)
T KOG0281|consen  403 VRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISS-----SHDDTILIWD  475 (499)
T ss_pred             hhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEec-----cCCCeEEEEE
Confidence            999999  56799999999999 99998874220      0011234444577888877777776     5668999998


Q ss_pred             CC
Q 005459          528 RY  529 (696)
Q Consensus       528 ~~  529 (696)
                      ..
T Consensus       476 Fl  477 (499)
T KOG0281|consen  476 FL  477 (499)
T ss_pred             cC
Confidence            86

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=5e-24  Score=210.74  Aligned_cols=279  Identities=15%  Similarity=0.194  Sum_probs=210.6

Q ss_pred             CCceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459           20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI   98 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~   98 (696)
                      .++-.+.||++|++||+++ |.+.-||.+. +.+.+. ++.+..+  +..++..+.||||.++|+++..+..+.+||+.+
T Consensus       225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~-~d~~~k-l~~tlvg--h~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t  300 (519)
T KOG0293|consen  225 DEVWFLQFSHNGKYLASASKDSTAIIWIVV-YDVHFK-LKKTLVG--HSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT  300 (519)
T ss_pred             CcEEEEEEcCCCeeEeeccCCceEEEEEEe-cCccee-eeeeeec--ccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence            5677899999999999995 6789999985 444422 2333222  456788899999999999999999999999998


Q ss_pred             cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcc
Q 005459           99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV  178 (696)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~  178 (696)
                      +......+..                    .+....-++..||+.++++|+.|+.+..|+.||+....-+          
T Consensus       301 gd~~~~y~~~--------------------~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~----------  350 (519)
T KOG0293|consen  301 GDLRHLYPSG--------------------LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWE----------  350 (519)
T ss_pred             chhhhhcccC--------------------cCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccc----------
Confidence            7753322100                    0112344577899999999999999998877776543221          


Q ss_pred             cccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce---ecC
Q 005459          179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELG  255 (696)
Q Consensus       179 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~  255 (696)
                                                .-..-.|.+++          +++||+.+++...|..+++.+.+....   ...
T Consensus       351 --------------------------gvr~~~v~dla----------it~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise  394 (519)
T KOG0293|consen  351 --------------------------GVRDPKVHDLA----------ITYDGKYVLLVTVDKKIRLYNREARVDRGLISE  394 (519)
T ss_pred             --------------------------ccccceeEEEE----------EcCCCcEEEEEecccceeeechhhhhhhccccc
Confidence                                      11122355654          899999999988999999888764322   134


Q ss_pred             CCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCC--eEEEEECC-CCCeEEEEEcCCcEE
Q 005459          256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP--VSCIAWTP-DNSAFAVGWKSRGLT  332 (696)
Q Consensus       256 ~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~--V~~l~~sp-dg~~lasg~~Dg~v~  332 (696)
                      +...+...+|.|++++.+--.+..+++||+.+ ...++...+        |+..  +..-+|-- |...+|+|++|+.|.
T Consensus       395 ~~~its~~iS~d~k~~LvnL~~qei~LWDl~e-~~lv~kY~G--------hkq~~fiIrSCFgg~~~~fiaSGSED~kvy  465 (519)
T KOG0293|consen  395 EQPITSFSISKDGKLALVNLQDQEIHLWDLEE-NKLVRKYFG--------HKQGHFIIRSCFGGGNDKFIASGSEDSKVY  465 (519)
T ss_pred             cCceeEEEEcCCCcEEEEEcccCeeEEeecch-hhHHHHhhc--------ccccceEEEeccCCCCcceEEecCCCceEE
Confidence            44555599999999999999999999999997 777777777        6543  33445654 668999999999999


Q ss_pred             EEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCC
Q 005459          333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY  381 (696)
Q Consensus       333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~  381 (696)
                      +|+-..++++.+|.|| ...|++++++|..+   +.++|++   ++++|.+.
T Consensus       466 IWhr~sgkll~~LsGH-s~~vNcVswNP~~p---~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  466 IWHRISGKLLAVLSGH-SKTVNCVSWNPADP---EMFASASDDGTIRIWGPS  513 (519)
T ss_pred             EEEccCCceeEeecCC-cceeeEEecCCCCH---HHhhccCCCCeEEEecCC
Confidence            9999999999999999 67899999999863   6667666   77777664

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.92  E-value=2.2e-23  Score=198.95  Aligned_cols=277  Identities=12%  Similarity=0.126  Sum_probs=210.4

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEE
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT  332 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~  332 (696)
                      .+|++.|. +.|+|+|.+||+|+.|..|.+|++....++.-++++        |+++|..+.|++||+.|++++.|++++
T Consensus        44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg--------HsgAVM~l~~~~d~s~i~S~gtDk~v~  115 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG--------HSGAVMELHGMRDGSHILSCGTDKTVR  115 (338)
T ss_pred             CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecc--------ccceeEeeeeccCCCEEEEecCCceEE
Confidence            78999998 999999999999999999999998765677788888        999999999999999999999999999


Q ss_pred             EEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec---ceeee
Q 005459          333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCL  406 (696)
Q Consensus       333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~  406 (696)
                      .||+++++....+++| .+-|+++.-+..+   .+.+.||+   ++++||.+..+.+.+... +-++.++.|   +..+.
T Consensus       116 ~wD~~tG~~~rk~k~h-~~~vNs~~p~rrg---~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~  190 (338)
T KOG0265|consen  116 GWDAETGKRIRKHKGH-TSFVNSLDPSRRG---PQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVI  190 (338)
T ss_pred             EEecccceeeehhccc-cceeeecCccccC---CeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEeccccccee
Confidence            9999999999999998 6778887743333   26667776   999999998888777644 456777777   77899


Q ss_pred             eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEcc----
Q 005459          407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR----  481 (696)
Q Consensus       407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~----  481 (696)
                      +|+-|+.+++||+...+.                    ...+.+|..+|..++.||+|.++.+-+-|.++ +||++    
T Consensus       191 sggIdn~ikvWd~r~~d~--------------------~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p  250 (338)
T KOG0265|consen  191 SGGIDNDIKVWDLRKNDG--------------------LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP  250 (338)
T ss_pred             eccccCceeeeccccCcc--------------------eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC
Confidence            999999999999987775                    45677999999999999999999999999999 99985    


Q ss_pred             CCc-eEecCCccceeeeEEEeEeeeCc-EEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEEEE
Q 005459          482 QKK-WRVFGDITQEQKIQSKGLLWLGK-IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVT  559 (696)
Q Consensus       482 sg~-w~~f~~~~~e~~~~v~~~~w~~~-~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~  559 (696)
                      +.| -+.|....+..+...-...|.++ .-++++    +.+..+.+|+...+..-+.+-.+...-.-+.+.|.+..++.+
T Consensus       251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ag----s~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~  326 (338)
T KOG0265|consen  251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAG----SADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSC  326 (338)
T ss_pred             CCceEEEeecchhhhhhhcceeeccCCCCccccc----cccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEe
Confidence            333 45554333222222336788754 234442    234567788764222211111111111124555778888888


Q ss_pred             EcCceEEE
Q 005459          560 YRPFDVHI  567 (696)
Q Consensus       560 ~~d~~~~l  567 (696)
                      +.|+.+.|
T Consensus       327 ~sdk~i~l  334 (338)
T KOG0265|consen  327 SSDKTIYL  334 (338)
T ss_pred             ccCceeEe
Confidence            87776654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.92  E-value=7.8e-25  Score=203.35  Aligned_cols=267  Identities=18%  Similarity=0.206  Sum_probs=215.2

Q ss_pred             EeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEE
Q 005459          137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL  216 (696)
Q Consensus       137 ~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  216 (696)
                      .+.+++-.|+.+++||.--+  -++++..-.                                  -...+++..|.... 
T Consensus        24 ~itp~g~flisa~kd~~pml--r~g~tgdwi----------------------------------gtfeghkgavw~~~-   66 (334)
T KOG0278|consen   24 PITPDGYFLISASKDGKPML--RNGDTGDWI----------------------------------GTFEGHKGAVWSAT-   66 (334)
T ss_pred             CCCCCceEEEEeccCCCchh--ccCCCCCcE----------------------------------EeeeccCcceeeee-
Confidence            45677888888998886432  234432211                                  02345666675432 


Q ss_pred             ccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceee
Q 005459          217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIR  293 (696)
Q Consensus       217 ~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~  293 (696)
                               +..+....++++.|.+.++||..++..+  ..|...|. ++|+.|.+.|.+|+.+..+||||++....+..
T Consensus        67 ---------l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~  137 (334)
T KOG0278|consen   67 ---------LNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK  137 (334)
T ss_pred             ---------cCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch
Confidence                     4455667778889999999999888765  67889998 99999999999999999999999988666677


Q ss_pred             EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCcccee--c
Q 005459          294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM--S  371 (696)
Q Consensus       294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~--s  371 (696)
                      .+.+        |++.|+.+-|....+++.+..+|++||+||..++..+++|.-.  +.|+++.+++++    +.+.  -
T Consensus       138 E~~g--------htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~--s~VtSlEvs~dG----~ilTia~  203 (334)
T KOG0278|consen  138 EISG--------HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN--SPVTSLEVSQDG----RILTIAY  203 (334)
T ss_pred             hhcC--------CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC--CCCcceeeccCC----CEEEEec
Confidence            7777        9999999999998899999999999999999999999999863  569999999998    6554  4


Q ss_pred             ceeeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee
Q 005459          372 GTSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY  448 (696)
Q Consensus       372 g~~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  448 (696)
                      |+.+.+|++.+..++...+- ...|  ..++| ....+.|+.|+.++-+|..++++.                    ..|
T Consensus       204 gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi--------------------~~~  262 (334)
T KOG0278|consen  204 GSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEI--------------------GSY  262 (334)
T ss_pred             CceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCcee--------------------eec
Confidence            55999999999988877643 2334  56667 556789999999999999999883                    345


Q ss_pred             -ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          449 -ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       449 -~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                       .+|-+||.|+.|||||...|+|++||++ +|.+..++
T Consensus       263 nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  263 NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence             7899999999999999999999999999 99987654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.92  E-value=6.8e-23  Score=209.27  Aligned_cols=218  Identities=20%  Similarity=0.316  Sum_probs=169.1

Q ss_pred             eCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459          228 SNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS  303 (696)
Q Consensus       228 ~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~  303 (696)
                      ++++.+++++.++.+++|+....+.   ...|...+. +.|+|+++++++++.||.|++|++.+ .+....+..      
T Consensus        61 ~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~------  133 (289)
T cd00200          61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-GKCLTTLRG------  133 (289)
T ss_pred             CCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-cEEEEEecc------
Confidence            3333344444444444444432211   134554444 99999999999999999999999986 667777776      


Q ss_pred             CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcC
Q 005459          304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE  380 (696)
Q Consensus       304 ~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~  380 (696)
                        |.+.|.+++|+|++..++++..|+.+++||+..++....+..| ...+.++.++|++    +.++.+.   .+.+|+.
T Consensus       134 --~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~----~~l~~~~~~~~i~i~d~  206 (289)
T cd00200         134 --HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDG----EKLLSSSSDGTIKLWDL  206 (289)
T ss_pred             --CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC-ccccceEEECCCc----CEEEEecCCCcEEEEEC
Confidence              8999999999999999999988999999999988888888876 6679999999997    5665554   8899999


Q ss_pred             CCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEE
Q 005459          381 YGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH  457 (696)
Q Consensus       381 ~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~  457 (696)
                      ..++.......|...+..+.+   ++.+++++.++.+++|++..+..                    ...+..|..+|.+
T Consensus       207 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~--------------------~~~~~~~~~~i~~  266 (289)
T cd00200         207 STGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC--------------------VQTLSGHTNSVTS  266 (289)
T ss_pred             CCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee--------------------EEEccccCCcEEE
Confidence            988888887777777755444   56677777799999999876443                    3345578889999


Q ss_pred             EEEcCCCCEEEEEeCCccE-EEE
Q 005459          458 VAASKDGMFLAVAGLHGLI-LYD  479 (696)
Q Consensus       458 va~s~dG~~la~ag~dG~i-~w~  479 (696)
                      ++|+|+|+++++++.||.+ +|+
T Consensus       267 ~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         267 LAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEECCCCCEEEEecCCCeEEecC
Confidence            9999999999999999999 985

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=7.7e-24  Score=206.76  Aligned_cols=275  Identities=13%  Similarity=0.134  Sum_probs=224.8

Q ss_pred             ccceeEEEe--eeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCC
Q 005459          130 EKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI  207 (696)
Q Consensus       130 ~~~~~v~~~--~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~  207 (696)
                      ++..+|+.+  .++-..+++++.|++|++++.  ++..-.                                  ..+.++
T Consensus       106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~--~tg~~e----------------------------------~~LrGH  149 (406)
T KOG0295|consen  106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDT--ETGELE----------------------------------RSLRGH  149 (406)
T ss_pred             ccccceeeeeeccCceEEEEecCCceEEEEEc--cchhhh----------------------------------hhhhcc
Confidence            344455444  334456777778999998543  322110                                  123344


Q ss_pred             cccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeec-ce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEE
Q 005459          208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-DK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVEL  282 (696)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~-~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~v  282 (696)
                      ...+.++.          |+..|+.+++++.|-.+++||.... ++   ..+|+..+. +.|-|.|.+|++++.|.+|+.
T Consensus       150 t~sv~di~----------~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~  219 (406)
T KOG0295|consen  150 TDSVFDIS----------FDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKA  219 (406)
T ss_pred             ccceeEEE----------EecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeE
Confidence            44566655          7788999999999999999998753 22   268888887 999999999999999999999


Q ss_pred             EEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459          283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       283 w~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      |++++ +-+++++.+        |..-|..++.+.||..+|+++.|.++++|-+.++.+...+++| +..|.+++|-|..
T Consensus       220 We~~t-g~cv~t~~~--------h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~h-Eh~vEci~wap~~  289 (406)
T KOG0295|consen  220 WECDT-GYCVKTFPG--------HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREH-EHPVECIAWAPES  289 (406)
T ss_pred             Eeccc-ceeEEeccC--------chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcc-ccceEEEEecccc
Confidence            99999 899999999        9999999999999999999999999999999999888899988 7888888887654


Q ss_pred             C------C----C-ccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCe
Q 005459          363 D------C----K-YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDR  425 (696)
Q Consensus       363 ~------~----~-~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~  425 (696)
                      .      .    + .+.+.+|+   ++++|+..++.+++++.+|.+.|  ++|++ ||+++|+..|+++++||+..... 
T Consensus       290 ~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c-  368 (406)
T KOG0295|consen  290 SYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC-  368 (406)
T ss_pred             cCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee-
Confidence            2      1    1 14566776   99999999999999999999999  77777 99999999999999999887665 


Q ss_pred             EEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459          426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       426 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~  480 (696)
                                         -.+...|..-+.++.|..+--|+++|+-|..+ +|.-
T Consensus       369 -------------------mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  369 -------------------MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             -------------------eeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence                               34556788889999999999999999999999 9863

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.92  E-value=5.8e-23  Score=241.35  Aligned_cols=228  Identities=12%  Similarity=0.145  Sum_probs=175.2

Q ss_pred             CCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459          229 NGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS  303 (696)
Q Consensus       229 dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~  303 (696)
                      +++.+++++.|+++++||....+..   .+|.+.+. ++|+| ++.+|++|+.||+|++||+.+ +..+.++..      
T Consensus       544 ~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~~~------  616 (793)
T PLN00181        544 IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGTIKT------  616 (793)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEEEec------
Confidence            4677888888999999998765432   67888887 99997 789999999999999999987 666666654      


Q ss_pred             CCCCCCeEEEEEC-CCCCeEEEEEcCCcEEEEEccCCe-eEEEeecccccceecccccCCCCCCccceecce---eeEEE
Q 005459          304 MDDTGPVSCIAWT-PDNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQW  378 (696)
Q Consensus       304 ~~h~g~V~~l~~s-pdg~~lasg~~Dg~v~vW~~~~~~-~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W  378 (696)
                        | ..|.+++|+ ++|+.||+|+.||.|++||+.... ...++.+| ...|+++.|. ++    ..+++++   ++++|
T Consensus       617 --~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h-~~~V~~v~f~-~~----~~lvs~s~D~~ikiW  687 (793)
T PLN00181        617 --K-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH-SKTVSYVRFV-DS----STLVSSSTDNTLKLW  687 (793)
T ss_pred             --C-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC-CCCEEEEEEe-CC----CEEEEEECCCEEEEE
Confidence              4 579999995 589999999999999999997654 46677777 6779999996 44    5677776   89999


Q ss_pred             cCCC------ceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecC-eee
Q 005459          379 DEYG------YRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSY  448 (696)
Q Consensus       379 ~~~~------~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~  448 (696)
                      +...      ...+..+.+|...+  +.+++ ++.+++++.|+.+++|+........ .+.- ...+      .++ ...
T Consensus       688 d~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~-s~~~-~~~~------~~~~~~~  759 (793)
T PLN00181        688 DLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVL-SYKF-KTID------PVSGLEV  759 (793)
T ss_pred             eCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceE-EEec-ccCC------ccccccc
Confidence            9863      35677788888766  55666 8899999999999999965443211 0000 0000      000 012


Q ss_pred             ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459          449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       449 ~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~  480 (696)
                      ..|...|++++|+|+|++|++|+.||.+ +|++
T Consensus       760 ~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        760 DDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            3456789999999999999999999999 9986

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.92  E-value=5.7e-23  Score=241.40  Aligned_cols=272  Identities=15%  Similarity=0.193  Sum_probs=207.2

Q ss_pred             eEEEEEeCCcEEEEeeccCCceeeeeeec----c-------eecCCCCeEEEEEcC-CCcEEEEEecCCeEEEEEccCCC
Q 005459          222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKI----D-------KELGSGDAVCASIAP-EQQILAVGTRRGVVELYDLAESA  289 (696)
Q Consensus       222 ~~~~~s~dG~~~~~~~~d~~~~~~~~~~~----~-------~~~~~~~~v~v~~sp-~~~~la~g~~dg~v~vw~~~~~~  289 (696)
                      ..+.|++||+++++++.|+++++|+....    .       ...++....+++|+| ++++||+|+.||+|++||+.+ +
T Consensus       487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~-~  565 (793)
T PLN00181        487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR-S  565 (793)
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC-C
Confidence            45678999999999999999999986421    0       012233333489987 578999999999999999987 6


Q ss_pred             ceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccC-CCCCCcc
Q 005459          290 SLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP-NQDCKYE  367 (696)
Q Consensus       290 ~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp-~~~~~~~  367 (696)
                      +.+..+.+        |.+.|++++|+| |+.+|++|+.|++|++||+..+..+.++..+  ..+.++.|++ ++    .
T Consensus       566 ~~~~~~~~--------H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g----~  631 (793)
T PLN00181        566 QLVTEMKE--------HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--ANICCVQFPSESG----R  631 (793)
T ss_pred             eEEEEecC--------CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC--CCeEEEEEeCCCC----C
Confidence            77777877        999999999997 8999999999999999999998888888754  4588888854 45    7


Q ss_pred             ceecce---eeEEEcCCCce-EEEEecCCcceEEEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEE
Q 005459          368 PLMSGT---SMMQWDEYGYR-LYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH  441 (696)
Q Consensus       368 ~l~sg~---~~~~W~~~~~~-l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~  441 (696)
                      .+++|+   .+.+|+....+ .+....+|...|..+.|  +..+++++.|+++++|++..+....           .+  
T Consensus       632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~-----------~~--  698 (793)
T PLN00181        632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGI-----------NE--  698 (793)
T ss_pred             EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcccc-----------CC--
Confidence            788877   89999998765 45666788888866665  7889999999999999986532100           00  


Q ss_pred             eecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc--eE-ecCCc-------cceeeeEEEeEeeeC--cE
Q 005459          442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--WR-VFGDI-------TQEQKIQSKGLLWLG--KI  508 (696)
Q Consensus       442 ~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~--w~-~f~~~-------~~e~~~~v~~~~w~~--~~  508 (696)
                       .....+.+|...+.+++|+|+|++||+|+.||.+ +|+.....  |. .|...       ..+....|..++|.+  ..
T Consensus       699 -~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~  777 (793)
T PLN00181        699 -TPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST  777 (793)
T ss_pred             -cceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence             0234677899999999999999999999999999 99976542  11 11111       011223477999975  46


Q ss_pred             EEEEEeecCCCeEEEEEee
Q 005459          509 IVVCNYIDSSNTYELLFYP  527 (696)
Q Consensus       509 lv~~~~~~~~~~~~lr~y~  527 (696)
                      ++++     +.++.|++|+
T Consensus       778 lva~-----~~dG~I~i~~  791 (793)
T PLN00181        778 LVAA-----NSTGNIKILE  791 (793)
T ss_pred             EEEe-----cCCCcEEEEe
Confidence            6666     3457899985

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.92  E-value=2.4e-23  Score=202.57  Aligned_cols=273  Identities=14%  Similarity=0.195  Sum_probs=220.5

Q ss_pred             CCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEE
Q 005459          206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVE  281 (696)
Q Consensus       206 ~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~  281 (696)
                      +|..-|++++          +-|-...+++++.|+++++||+.+++..   .||-..+. ++||+...++.+++.|++|+
T Consensus       149 gHlgWVr~va----------vdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  149 GHLGWVRSVA----------VDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             hccceEEEEe----------eCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence            4555566654          6677778888999999999999988654   68888888 99999999999999999999


Q ss_pred             EEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCC
Q 005459          282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN  361 (696)
Q Consensus       282 vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~  361 (696)
                      .||+.. .+.++...+        |-..|.|++..|.-..|++|+.|.++||||+.+...+.++.|| ...|.++.+.|.
T Consensus       219 CwDLe~-nkvIR~YhG--------HlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~~V~~V~~~~~  288 (460)
T KOG0285|consen  219 CWDLEY-NKVIRHYHG--------HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TNPVASVMCQPT  288 (460)
T ss_pred             EEechh-hhhHHHhcc--------ccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC-CCcceeEEeecC
Confidence            999998 888998998        9999999999999999999999999999999999999999999 888999999887


Q ss_pred             CCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCC
Q 005459          362 QDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD  435 (696)
Q Consensus       362 ~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~  435 (696)
                      +    ..+++|+   ++++||...++-..++..|...+  +++.| ...++|++.|. ++-|++..++-           
T Consensus       289 d----pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f-----------  352 (460)
T KOG0285|consen  289 D----PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEF-----------  352 (460)
T ss_pred             C----CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccch-----------
Confidence            7    6788887   99999999999999988888887  55566 45566777664 66788776664           


Q ss_pred             cceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecC-Cccc----eeeeEEEeEeee--Cc
Q 005459          436 ELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFG-DITQ----EQKIQSKGLLWL--GK  507 (696)
Q Consensus       436 ~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~-~~~~----e~~~~v~~~~w~--~~  507 (696)
                               ...+.+|+.-|.+++...|| ++++|++.|.+ .||.++|---.+. ...|    |.+--+...|+.  +-
T Consensus       353 ---------~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~  422 (460)
T KOG0285|consen  353 ---------LQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGS  422 (460)
T ss_pred             ---------hhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCc
Confidence                     44578999999999999998 56689999999 9999988421111 1111    222223444554  45


Q ss_pred             EEEEEEeecCCCeEEEEEeeCC
Q 005459          508 IIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       508 ~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      .||+|     ..+..|++|..+
T Consensus       423 rlit~-----eadKtIk~~keD  439 (460)
T KOG0285|consen  423 RLITG-----EADKTIKMYKED  439 (460)
T ss_pred             eEEec-----cCCcceEEEecc
Confidence            67776     345789999775

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.92  E-value=3.6e-23  Score=197.49  Aligned_cols=225  Identities=14%  Similarity=0.148  Sum_probs=185.5

Q ss_pred             CcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCC-cEEEEEecCCeEE
Q 005459          207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQ-QILAVGTRRGVVE  281 (696)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~-~~la~g~~dg~v~  281 (696)
                      +..+|.++.          +.+||+.+++++.|+++..||.+++++.   .+|.+.+. +..+..| .++.+|+.||+++
T Consensus        89 HsgAVM~l~----------~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~k  158 (338)
T KOG0265|consen   89 HSGAVMELH----------GMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLK  158 (338)
T ss_pred             ccceeEeee----------eccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEE
Confidence            344566655          7899999999999999999999998765   67888887 6644444 4677899999999


Q ss_pred             EEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCC
Q 005459          282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN  361 (696)
Q Consensus       282 vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~  361 (696)
                      |||++. ...++++..         +-+++++.|..++..+.+|+-|+.|++||+.......++.|| .+.|+.+..+|+
T Consensus       159 l~D~R~-k~~~~t~~~---------kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh-~DtIt~lsls~~  227 (338)
T KOG0265|consen  159 LWDIRK-KEAIKTFEN---------KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH-ADTITGLSLSRY  227 (338)
T ss_pred             EEeecc-cchhhcccc---------ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecc-cCceeeEEeccC
Confidence            999998 677776654         567999999999999999999999999999999999999999 889999999999


Q ss_pred             CCCCccceecce---eeEEEcCC----CceEEEEecCCcceE------EEEec-ceeeeeccCCCCceeeeeeecCCeEE
Q 005459          362 QDCKYEPLMSGT---SMMQWDEY----GYRLYAIEEGSSERV------LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLL  427 (696)
Q Consensus       362 ~~~~~~~l~sg~---~~~~W~~~----~~~l~~~~~~~~~~v------~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~  427 (696)
                      +    .++.+-+   ++++|+.+    +.+++.++.+|....      ...++ +..+.+++.|..+++|+.....-   
T Consensus       228 g----s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~---  300 (338)
T KOG0265|consen  228 G----SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI---  300 (338)
T ss_pred             C----CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccE---
Confidence            9    6766555   89999985    456677777765432      45556 77788899999999999654332   


Q ss_pred             EEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE
Q 005459          428 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI  476 (696)
Q Consensus       428 ~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i  476 (696)
                                       .-.+.+|.+.|.+++|.|....+.+++.|.++
T Consensus       301 -----------------lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i  332 (338)
T KOG0265|consen  301 -----------------LYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI  332 (338)
T ss_pred             -----------------EEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence                             33456899999999999999999999999887

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.91  E-value=3.6e-22  Score=203.89  Aligned_cols=269  Identities=20%  Similarity=0.295  Sum_probs=214.2

Q ss_pred             CCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc---eecCCCCeE-EEEEcCCCcEEEEEecCCeEE
Q 005459          206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID---KELGSGDAV-CASIAPEQQILAVGTRRGVVE  281 (696)
Q Consensus       206 ~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~v-~v~~sp~~~~la~g~~dg~v~  281 (696)
                      .|...|.++.          ++++|+.+++++.++.+.+|+....+   ....|...+ .+.|+|+++.|++++.||.|+
T Consensus         7 ~h~~~i~~~~----------~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~   76 (289)
T cd00200           7 GHTGGVTCVA----------FSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIR   76 (289)
T ss_pred             ccCCCEEEEE----------EcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEE
Confidence            4556677766          67788888888888999999987543   235677777 499999999999999999999


Q ss_pred             EEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCC
Q 005459          282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN  361 (696)
Q Consensus       282 vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~  361 (696)
                      +|++.. .+....+..        |.+.|.+++|+|+++.+++++.|+.+++|++..++....+..| ...+.++.++|+
T Consensus        77 i~~~~~-~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~  146 (289)
T cd00200          77 LWDLET-GECVRTLTG--------HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDWVNSVAFSPD  146 (289)
T ss_pred             EEEcCc-ccceEEEec--------cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC-CCcEEEEEEcCc
Confidence            999987 566777776        8889999999999999999998999999999988888888876 667999999998


Q ss_pred             CCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCC
Q 005459          362 QDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD  435 (696)
Q Consensus       362 ~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~  435 (696)
                      +    ..++++.   .+.+|+...++.+.....|...+..+.+   ++.+++++.++.+++|++..+..           
T Consensus       147 ~----~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-----------  211 (289)
T cd00200         147 G----TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC-----------  211 (289)
T ss_pred             C----CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce-----------
Confidence            6    6776654   8899999988888888788777755444   55788888899999999865443           


Q ss_pred             cceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE-ecCCccceeeeEEEeEeeeC--cEEEE
Q 005459          436 ELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWLG--KIIVV  511 (696)
Q Consensus       436 ~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~-~f~~~~~e~~~~v~~~~w~~--~~lv~  511 (696)
                               ...+..|..+|.+++|+|++.++++++.+|.+ +|+..+++-. .+.    .....+..++|.+  ..+++
T Consensus       212 ---------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~  278 (289)
T cd00200         212 ---------LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS----GHTNSVTSLAWSPDGKRLAS  278 (289)
T ss_pred             ---------ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc----ccCCcEEEEEECCCCCEEEE
Confidence                     33455788899999999999999999989999 9999876532 222    1222477899986  56666


Q ss_pred             EEeecCCCeEEEEEee
Q 005459          512 CNYIDSSNTYELLFYP  527 (696)
Q Consensus       512 ~~~~~~~~~~~lr~y~  527 (696)
                      +     +.+..+++|+
T Consensus       279 ~-----~~d~~i~iw~  289 (289)
T cd00200         279 G-----SADGTIRIWD  289 (289)
T ss_pred             e-----cCCCeEEecC
Confidence            5     3456888884

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=6.9e-23  Score=189.01  Aligned_cols=265  Identities=19%  Similarity=0.221  Sum_probs=211.3

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEE
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT  332 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~  332 (696)
                      ..+.+++. +.||-||++..+++.|.+||+|+.-. +.++++..+        |...|.+++-+.|+..+|+|+.|+.+.
T Consensus        14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r-g~liktYsg--------hG~EVlD~~~s~Dnskf~s~GgDk~v~   84 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-GALIKTYSG--------HGHEVLDAALSSDNSKFASCGGDKAVQ   84 (307)
T ss_pred             cccccceEEEEEccCCCEEEEcCCCceEEeecccc-cceeeeecC--------CCceeeeccccccccccccCCCCceEE
Confidence            46788998 99999999999999999999999987 899999999        999999999999999999999999999


Q ss_pred             EEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCC--ceEEEEecCCcceEEEEec-ceeee
Q 005459          333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG--YRLYAIEEGSSERVLIFSF-GKCCL  406 (696)
Q Consensus       333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~--~~l~~~~~~~~~~v~~~~~-~~~~~  406 (696)
                      +||+.+++....+++| ...|+.++|..+.    ..++||+   ++++||-+.  .+.+.++....+.|..+.. ...++
T Consensus        85 vwDV~TGkv~Rr~rgH-~aqVNtV~fNees----SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIv  159 (307)
T KOG0316|consen   85 VWDVNTGKVDRRFRGH-LAQVNTVRFNEES----SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIV  159 (307)
T ss_pred             EEEcccCeeeeecccc-cceeeEEEecCcc----eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEE
Confidence            9999999999999999 7889999998877    7888888   899999764  5677777777788888888 77899


Q ss_pred             eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCce
Q 005459          407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW  485 (696)
Q Consensus       407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w  485 (696)
                      +|+.||+++.+++..|..                    -..|.+|  ||++++||+||+...+++-|+++ +-|-.+|+.
T Consensus       160 aGS~DGtvRtydiR~G~l--------------------~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl  217 (307)
T KOG0316|consen  160 AGSVDGTVRTYDIRKGTL--------------------SSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKL  217 (307)
T ss_pred             eeccCCcEEEEEeeccee--------------------ehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence            999999999999988775                    4567766  89999999999999999999999 999999973


Q ss_pred             E-ecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEE----ccCCEEEEEE
Q 005459          486 R-VFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD----VYEDYILVTY  560 (696)
Q Consensus       486 ~-~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~----~~~~~llv~~  560 (696)
                      - .+.. .+..++.+....-..+..|++|    +++..+-||+..   +...+...++++.|+..+    |..+.++++.
T Consensus       218 L~sYkG-hkn~eykldc~l~qsdthV~sg----SEDG~Vy~wdLv---d~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~  289 (307)
T KOG0316|consen  218 LKSYKG-HKNMEYKLDCCLNQSDTHVFSG----SEDGKVYFWDLV---DETQISKLSVVSTVIVTDLSCHPTMDDFITAT  289 (307)
T ss_pred             HHHhcc-cccceeeeeeeecccceeEEec----cCCceEEEEEec---cceeeeeeccCCceeEEeeecccCccceeEec
Confidence            2 1211 1223344443322334444432    566789999764   444555566666564443    4455566655


Q ss_pred             cC
Q 005459          561 RP  562 (696)
Q Consensus       561 ~d  562 (696)
                      ..
T Consensus       290 ~~  291 (307)
T KOG0316|consen  290 GH  291 (307)
T ss_pred             CC
Confidence            43

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=2.1e-22  Score=210.83  Aligned_cols=417  Identities=15%  Similarity=0.120  Sum_probs=251.8

Q ss_pred             CCceEEEEEeCCcEEEEEccCeEEEeecCCceee----EEEeecCh----------------------------------
Q 005459           20 SSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVR----LGKYKRDS----------------------------------   61 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~----l~~~~r~~----------------------------------   61 (696)
                      +.+.+++||.||.+|++++...|.+|++. .+.+    +-...|+.                                  
T Consensus       166 s~Vsav~fsEdgSYfvT~gnrHvk~wyl~-~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLv  244 (1080)
T KOG1408|consen  166 SVVSAVAFSEDGSYFVTSGNRHVKLWYLQ-IQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLV  244 (1080)
T ss_pred             eeEEEEEEccCCceeeeeeeeeEEEEEee-ccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEeccccee
Confidence            56777999999999999999999999985 3220    10001110                                  


Q ss_pred             --------HHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeee---eEEEeeeccccc
Q 005459           62 --------ESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKI---SLVLNEQLPFAE  130 (696)
Q Consensus        62 --------~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~  130 (696)
                              ....+-..-.+-+.+-..++|+++.++|.|+||+.++-.....++....-+..+.++   +-.+.+..+..-
T Consensus       245 EFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~f  324 (1080)
T KOG1408|consen  245 EFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIF  324 (1080)
T ss_pred             eechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccC
Confidence                    000000000112223357899999999999999987543221111111111111110   000111111111


Q ss_pred             cceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCccc
Q 005459          131 KGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSA  210 (696)
Q Consensus       131 ~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~  210 (696)
                      .+...+.|....+.+.+--.|..+++|+...-.....                                 .....-|.+.
T Consensus       325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk---------------------------------~~s~lyHS~c  371 (1080)
T KOG1408|consen  325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK---------------------------------CSSMLYHSAC  371 (1080)
T ss_pred             CceeEEEecCCCceEEEEEcCceEEEEeccccccccc---------------------------------eeeeeeccce
Confidence            1333344555667777777788888855443221100                                 0112234555


Q ss_pred             EEEEEEcc-Cc-ceEEEEEeCCcEEEEeeccCCceeeeeeec---cee--------------------------------
Q 005459          211 IIWLELCL-PM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKI---DKE--------------------------------  253 (696)
Q Consensus       211 i~~~~~~~-~~-~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~---~~~--------------------------------  253 (696)
                      |.+++--| .+ ....+..|.|- +.+++.|+||++|+....   +.+                                
T Consensus       372 iW~Ve~~p~nv~~~~~aclp~~c-F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdk  450 (1080)
T KOG1408|consen  372 IWDVENLPCNVHSPTAACLPRGC-FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDK  450 (1080)
T ss_pred             eeeeccccccccCcccccCCccc-eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccc
Confidence            66665433 22 12233445554 677788999999987631   100                                


Q ss_pred             -----cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC---CCCeEEE
Q 005459          254 -----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP---DNSAFAV  324 (696)
Q Consensus       254 -----~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp---dg~~las  324 (696)
                           .+..-.++ +++||+|+.||+|..-|++|||++.. .+....+..        |...|.|+.||-   ..++||+
T Consensus       451 a~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eA--------HesEilcLeyS~p~~~~kLLAS  521 (1080)
T KOG1408|consen  451 ALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEA--------HESEILCLEYSFPVLTNKLLAS  521 (1080)
T ss_pred             cchhhcCcccceEEEEECCCcceecccCccCceEEEEehh-hhhhhheec--------ccceeEEEeecCchhhhHhhhh
Confidence                 00112344 99999999999999999999999987 666666777        999999999995   4579999


Q ss_pred             EEcCCcEEEEEccC-CeeEEEeecccccceecccccCCCCCCccceecce-eeEEEcCCC----ceEEEEecC--CcceE
Q 005459          325 GWKSRGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYG----YRLYAIEEG--SSERV  396 (696)
Q Consensus       325 g~~Dg~v~vW~~~~-~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~----~~l~~~~~~--~~~~v  396 (696)
                      ++.|+-|.|+|+.. ..++.++.+| .++|+++.|--++ .+.+.+-+|. +...+....    +.++.....  .+..+
T Consensus       522 asrdRlIHV~Dv~rny~l~qtld~H-SssITsvKFa~~g-ln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTl  599 (1080)
T KOG1408|consen  522 ASRDRLIHVYDVKRNYDLVQTLDGH-SSSITSVKFACNG-LNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTL  599 (1080)
T ss_pred             ccCCceEEEEecccccchhhhhccc-ccceeEEEEeecC-CceEEEeccCchhhheehhccccCceeccccccccccceE
Confidence            99999999999964 4577889888 7789999986554 1223344443 322332211    222221110  11233


Q ss_pred             --EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcc--e-----------------------eEEeecCeee
Q 005459          397 --LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL--K-----------------------ILHLNLPVSY  448 (696)
Q Consensus       397 --~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~--~-----------------------w~~~~~~~~~  448 (696)
                        +.+++ .|.++++|.|..++++++..+++.-.+....+-...  +                       .....+....
T Consensus       600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m  679 (1080)
T KOG1408|consen  600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM  679 (1080)
T ss_pred             EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence              34444 777888888888888887777665444433322110  0                       0122345566


Q ss_pred             ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459          449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       449 ~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s  482 (696)
                      .+|...|..+.|++|-++|.+++.||.| +|.+..
T Consensus       680 ~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  680 TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             cCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            7999999999999999999999999999 999854

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=4.3e-22  Score=209.62  Aligned_cols=264  Identities=20%  Similarity=0.269  Sum_probs=193.7

Q ss_pred             CcEEEEEccCeEEEeecCCcee-eEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCC
Q 005459           31 NGLLLIASPCHIELWSSSQHKV-RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQ  109 (696)
Q Consensus        31 g~lla~~~~~~v~iW~~~~~~~-~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~  109 (696)
                      ...||++....|++|+.....+ .+..+.        ...++++.|+|||+.||+++.+|.+.|||+...+.....    
T Consensus       188 ~n~laValg~~vylW~~~s~~v~~l~~~~--------~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~----  255 (484)
T KOG0305|consen  188 ANVLAVALGQSVYLWSASSGSVTELCSFG--------EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL----  255 (484)
T ss_pred             CCeEEEEecceEEEEecCCCceEEeEecC--------CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc----
Confidence            3478888888999999863321 222221        366889999999999999999999999999744321111    


Q ss_pred             CCCceeeeeeEEEeeeccccc-cceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCC
Q 005459          110 PSGLFFIKISLVLNEQLPFAE-KGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN  188 (696)
Q Consensus       110 ~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~  188 (696)
                                         .+ +...|.+++.....+.+|+.+|.|..+                               
T Consensus       256 -------------------~~~h~~rvg~laW~~~~lssGsr~~~I~~~-------------------------------  285 (484)
T KOG0305|consen  256 -------------------RGSHASRVGSLAWNSSVLSSGSRDGKILNH-------------------------------  285 (484)
T ss_pred             -------------------cCCcCceeEEEeccCceEEEecCCCcEEEE-------------------------------
Confidence                               11 344555555555556666666665442                               


Q ss_pred             CcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc----eecCCCCeEE-EE
Q 005459          189 GLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----KELGSGDAVC-AS  263 (696)
Q Consensus       189 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~v~-v~  263 (696)
                                                                               |....+    .+.+|..-|| +.
T Consensus       286 ---------------------------------------------------------dvR~~~~~~~~~~~H~qeVCgLk  308 (484)
T KOG0305|consen  286 ---------------------------------------------------------DVRISQHVVSTLQGHRQEVCGLK  308 (484)
T ss_pred             ---------------------------------------------------------EEecchhhhhhhhcccceeeeeE
Confidence                                                                     221111    1257899999 99


Q ss_pred             EcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEE--EcCCcEEEEEccCCe
Q 005459          264 IAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVG--WKSRGLTVWSVSGCR  340 (696)
Q Consensus       264 ~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg--~~Dg~v~vW~~~~~~  340 (696)
                      |++|++++|+|+.|+.+.|||... .+++..+..        |+++|..++|+| ....||+|  ..|+.|++||+.++.
T Consensus       309 ws~d~~~lASGgnDN~~~Iwd~~~-~~p~~~~~~--------H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~  379 (484)
T KOG0305|consen  309 WSPDGNQLASGGNDNVVFIWDGLS-PEPKFTFTE--------HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA  379 (484)
T ss_pred             ECCCCCeeccCCCccceEeccCCC-ccccEEEec--------cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc
Confidence            999999999999999999999966 677778888        999999999999 77799997  469999999999988


Q ss_pred             eEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeee
Q 005459          341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVI  420 (696)
Q Consensus       341 ~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~  420 (696)
                      .+..+...                      +.++.+.|.....|++.+..-                  .++.+.+|...
T Consensus       380 ~i~~vdtg----------------------sQVcsL~Wsk~~kEi~sthG~------------------s~n~i~lw~~p  419 (484)
T KOG0305|consen  380 RIDSVDTG----------------------SQVCSLIWSKKYKELLSTHGY------------------SENQITLWKYP  419 (484)
T ss_pred             EecccccC----------------------CceeeEEEcCCCCEEEEecCC------------------CCCcEEEEecc
Confidence            76444322                      113667787777776665422                  23355566655


Q ss_pred             ecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459          421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s  482 (696)
                      +...                    ...+.+|+.+|.++++||||..+++|+.|.++ +|++-.
T Consensus       420 s~~~--------------------~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  420 SMKL--------------------VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             ccce--------------------eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence            4332                    55778999999999999999999999999999 988754

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=4.8e-21  Score=205.37  Aligned_cols=332  Identities=12%  Similarity=0.171  Sum_probs=249.9

Q ss_pred             EeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEE
Q 005459          137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL  216 (696)
Q Consensus       137 ~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  216 (696)
                      +|.|.+-.++++..+|.|+.|+..  ...-.                                  ....+|+++|+.+. 
T Consensus        16 sFHP~rPwILtslHsG~IQlWDYR--M~tli----------------------------------~rFdeHdGpVRgv~-   58 (1202)
T KOG0292|consen   16 SFHPKRPWILTSLHSGVIQLWDYR--MGTLI----------------------------------DRFDEHDGPVRGVD-   58 (1202)
T ss_pred             ecCCCCCEEEEeecCceeeeehhh--hhhHH----------------------------------hhhhccCCccceee-
Confidence            455667789999999999984432  21100                                  12346788888876 


Q ss_pred             ccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCcee
Q 005459          217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLI  292 (696)
Q Consensus       217 ~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~  292 (696)
                               |.|++-+++++++|..|++|+....+++   .||-+-|+ +.|++...+|.+++.|.|||||++.+ ..++
T Consensus        59 ---------FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs-r~~i  128 (1202)
T KOG0292|consen   59 ---------FHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS-RKCI  128 (1202)
T ss_pred             ---------ecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-CceE
Confidence                     7788889999999999999998877664   79999999 99999999999999999999999998 8999


Q ss_pred             eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe-----------------------------eEE
Q 005459          293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-----------------------------LMS  343 (696)
Q Consensus       293 ~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~-----------------------------~~~  343 (696)
                      ..+.+        |.--|.|..|.|....++|++-|.+|||||+.+-+                             ..+
T Consensus       129 avltG--------HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~  200 (1202)
T KOG0292|consen  129 AVLTG--------HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH  200 (1202)
T ss_pred             EEEec--------CceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence            99999        99999999999999999999999999999984311                             123


Q ss_pred             EeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEE--EecCCcceE--EEEec-ceeeeeccCCCCce
Q 005459          344 TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYA--IEEGSSERV--LIFSF-GKCCLNRGVSGMTY  415 (696)
Q Consensus       344 ~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~--~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~  415 (696)
                      .+.|| ...|+.++|+|.-    ..++||+   .+++|.....+.|-  +..||.+.|  +.|++ ...++|.+.|++++
T Consensus       201 VLEGH-DRGVNwaAfhpTl----pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksir  275 (1202)
T KOG0292|consen  201 VLEGH-DRGVNWAAFHPTL----PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIR  275 (1202)
T ss_pred             eeccc-ccccceEEecCCc----ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEE
Confidence            45566 7779999999987    8889998   88899887766655  457899998  55666 78899999999999


Q ss_pred             eeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceEecCCcccee
Q 005459          416 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQ  495 (696)
Q Consensus       416 ~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~~f~~~~~e~  495 (696)
                      +||+.....                    .+++...+..-+.++..|.++.+|.|-..|.++|.++..|           
T Consensus       276 VwDm~kRt~--------------------v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleREr-----------  324 (1202)
T KOG0292|consen  276 VWDMTKRTS--------------------VQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERER-----------  324 (1202)
T ss_pred             EEecccccc--------------------eeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccC-----------
Confidence            999876554                    5678888889999999999999998888888888765322           


Q ss_pred             eeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC-CCCccceeEEee---cCCcc--EEEEccCCEEEEEE--cCceEEE
Q 005459          496 KIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKS---LLAKP--IVMDVYEDYILVTY--RPFDVHI  567 (696)
Q Consensus       496 ~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~-~l~~~~~~~~~~---~~~~~--l~~~~~~~~llv~~--~d~~~~l  567 (696)
                      .    ..+-+++.|.-.      ++..||.|+.. .-+.. ++....   +..+|  |+.+|-++.+++.+  +++..-|
T Consensus       325 p----a~~v~~n~LfYv------kd~~i~~~d~~t~~d~~-v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L  393 (1202)
T KOG0292|consen  325 P----AYAVNGNGLFYV------KDRFIRSYDLRTQKDTA-VASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYEL  393 (1202)
T ss_pred             c----eEEEcCCEEEEE------ccceEEeeeccccccce-eEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEE
Confidence            1    223344444432      24678888765 22222 222111   11233  55567777777732  3344444


Q ss_pred             EEE
Q 005459          568 FHV  570 (696)
Q Consensus       568 ~~~  570 (696)
                      |.+
T Consensus       394 ~~i  396 (1202)
T KOG0292|consen  394 VQI  396 (1202)
T ss_pred             EEe
Confidence            444

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.90  E-value=4.2e-22  Score=195.66  Aligned_cols=268  Identities=17%  Similarity=0.189  Sum_probs=206.9

Q ss_pred             ceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccE
Q 005459          132 GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI  211 (696)
Q Consensus       132 ~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i  211 (696)
                      +.-|+++...++.|+.|+.||.+++|+-.|+....                                     ..++...|
T Consensus       105 dDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~-------------------------------------~~Ght~~i  147 (423)
T KOG0313|consen  105 DDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKT-------------------------------------IVGHTGPI  147 (423)
T ss_pred             hhhhhhhcccCceEEEeecCCeeEEEecCCceEEE-------------------------------------EecCCcce
Confidence            33455665568999999999999997655543322                                     22344445


Q ss_pred             EEEEEccCcceEEEEEeCC--cEEEEeeccCCceeeeeeeccee-------cCCCCeEE-EEEcCCCcEEEEEecCCeEE
Q 005459          212 IWLELCLPMRLLFVLYSNG--QLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAVC-ASIAPEQQILAVGTRRGVVE  281 (696)
Q Consensus       212 ~~~~~~~~~~~~~~~s~dG--~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~v~-v~~sp~~~~la~g~~dg~v~  281 (696)
                      .++.         ++.++.  ..+++++.|.++++|....++..       .||..+|- ++.++++..+++|+.|.+++
T Consensus       148 k~v~---------~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lk  218 (423)
T KOG0313|consen  148 KSVA---------WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLK  218 (423)
T ss_pred             eeeE---------EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceee
Confidence            5443         233332  26888899999999987765432       59999987 99999999999999999999


Q ss_pred             EEEccCCC------------------------ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459          282 LYDLAESA------------------------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS  337 (696)
Q Consensus       282 vw~~~~~~------------------------~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~  337 (696)
                      +|+.....                        .++-++.        +|+++|.++.|++ ...+.+++.|++|++||+.
T Consensus       219 iWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~--------GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDle  289 (423)
T KOG0313|consen  219 IWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE--------GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLE  289 (423)
T ss_pred             ecccCCCccccccccchhhhhhhhhhhcccccCceEEec--------ccccceeeEEEcC-CCceEeecccceEEEEEee
Confidence            99932200                        1222333        4999999999998 7789999999999999999


Q ss_pred             CCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCce---EEEEecCCcceE--EEEec--ceeeee
Q 005459          338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR---LYAIEEGSSERV--LIFSF--GKCCLN  407 (696)
Q Consensus       338 ~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~---l~~~~~~~~~~v--~~~~~--~~~~~s  407 (696)
                      ++.+..++.+.  .+++++..+|..    ..+++|+   .+++||++++.   ....+.+|.+.|  +..++  -..+++
T Consensus       290 tg~~~~~~~~~--ksl~~i~~~~~~----~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S  363 (423)
T KOG0313|consen  290 TGGLKSTLTTN--KSLNCISYSPLS----KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS  363 (423)
T ss_pred             cccceeeeecC--cceeEeeccccc----ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEE
Confidence            99998888764  568999999987    8899888   88999997643   345667999988  44455  567899


Q ss_pred             ccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459          408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       408 ~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~  480 (696)
                      ++.|+++++||+......                   .....+|+..|.++.|+ +|.++++||.|..+ ++.-
T Consensus       364 ~S~D~t~klWDvRS~k~p-------------------lydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  364 GSYDNTVKLWDVRSTKAP-------------------LYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             EecCCeEEEEEeccCCCc-------------------ceeeccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence            999999999999887752                   34567899999999995 56799999999999 8753

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=8.5e-23  Score=202.08  Aligned_cols=278  Identities=18%  Similarity=0.184  Sum_probs=207.3

Q ss_pred             ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC--ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC
Q 005459          253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR  329 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg  329 (696)
                      +..|.+-|. +.|||+|++||+|+.|.+..+|.+....  ++.+++.+        |..+|..+.||||.++|.+++.|.
T Consensus       220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg--------h~~~V~yi~wSPDdryLlaCg~~e  291 (519)
T KOG0293|consen  220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG--------HSQPVSYIMWSPDDRYLLACGFDE  291 (519)
T ss_pred             HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec--------ccCceEEEEECCCCCeEEecCchH
Confidence            367999999 9999999999999999999999987633  34677777        999999999999999999999999


Q ss_pred             cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEE--ec-ce
Q 005459          330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GK  403 (696)
Q Consensus       330 ~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~--~~-~~  403 (696)
                      .+++||+.++.+...++.....++++++|.||+    ..+++|+   ++..|+.++..+-.=..-...+|+.+  .+ ++
T Consensus       292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg----~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk  367 (519)
T KOG0293|consen  292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG----FRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGK  367 (519)
T ss_pred             heeeccCCcchhhhhcccCcCCCcceeEEccCC----ceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCc
Confidence            999999999998877765435679999999999    8899888   88899998765322111123456444  44 89


Q ss_pred             eeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459          404 CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       404 ~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s  482 (696)
                      .+++.+.|..+++.+.....++                     .......||.+.++|.||+++.+-=.+..+ +||++.
T Consensus       368 ~vl~v~~d~~i~l~~~e~~~dr---------------------~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e  426 (519)
T KOG0293|consen  368 YVLLVTVDKKIRLYNREARVDR---------------------GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEE  426 (519)
T ss_pred             EEEEEecccceeeechhhhhhh---------------------ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence            9999999998888776655543                     123345689999999999999999999999 999984


Q ss_pred             CceEecCC-ccceee-eEEE-eEeeeCcEEEEEEeecCCCeEEEEEeeCC--CCCccceeEEeecCCccEEEEc-cCCEE
Q 005459          483 KKWRVFGD-ITQEQK-IQSK-GLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDV-YEDYI  556 (696)
Q Consensus       483 g~w~~f~~-~~~e~~-~~v~-~~~w~~~~lv~~~~~~~~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~l~~~~-~~~~l  556 (696)
                        |++... ..+.+. |.++ ++...++-.|+.    .+++.++++|.|.  ++......|...+-  .++-+| +-.++
T Consensus       427 --~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS----GSED~kvyIWhr~sgkll~~LsGHs~~vN--cVswNP~~p~m~  498 (519)
T KOG0293|consen  427 --NKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS----GSEDSKVYIWHRISGKLLAVLSGHSKTVN--CVSWNPADPEMF  498 (519)
T ss_pred             --hhHHHHhhcccccceEEEeccCCCCcceEEe----cCCCceEEEEEccCCceeEeecCCcceee--EEecCCCCHHHh
Confidence              443111 123333 4455 455555455544    2567899999996  34333333444332  366666 44567


Q ss_pred             EEEEcCceEEEEEEE
Q 005459          557 LVTYRPFDVHIFHVK  571 (696)
Q Consensus       557 lv~~~d~~~~l~~~~  571 (696)
                      +.++.|++|+||...
T Consensus       499 ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  499 ASASDDGTIRIWGPS  513 (519)
T ss_pred             hccCCCCeEEEecCC
Confidence            779999999999653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.89  E-value=1.7e-23  Score=200.74  Aligned_cols=266  Identities=14%  Similarity=0.191  Sum_probs=209.2

Q ss_pred             eEEEEEeCCcEEEEeeccCCceeeeeeecceec-----------CCCCeE-EEEEcCCCcEEEEEecCCeEEEEEccCCC
Q 005459          222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL-----------GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA  289 (696)
Q Consensus       222 ~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~-----------~~~~~v-~v~~sp~~~~la~g~~dg~v~vw~~~~~~  289 (696)
                      .++.|+|||+++++++-|+-+.+|+..+++...           -+.+++ |+.||.|...+|+|+.||.|+||.+.+ +
T Consensus       217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t-G  295 (508)
T KOG0275|consen  217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET-G  295 (508)
T ss_pred             hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-c
Confidence            357799999999999999999999998875431           155666 499999999999999999999999999 8


Q ss_pred             ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce
Q 005459          290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL  369 (696)
Q Consensus       290 ~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l  369 (696)
                      .+++.+..       +|+..|+|+.||.|+..+.+++.|.++++--+..++++..++|| .+.|+...|.++|    ..+
T Consensus       296 ~ClRrFdr-------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH-sSyvn~a~ft~dG----~~i  363 (508)
T KOG0275|consen  296 QCLRRFDR-------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH-SSYVNEATFTDDG----HHI  363 (508)
T ss_pred             hHHHHhhh-------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc-cccccceEEcCCC----CeE
Confidence            88888874       39999999999999999999999999999999999999999999 7889999999999    888


Q ss_pred             ecce---eeEEEcCCCceEEEEecCCc--ceEEE--Eec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeE
Q 005459          370 MSGT---SMMQWDEYGYRLYAIEEGSS--ERVLI--FSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL  440 (696)
Q Consensus       370 ~sg~---~~~~W~~~~~~l~~~~~~~~--~~v~~--~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~  440 (696)
                      ++++   ++++|+..+.+++.+++...  -.|..  +-|  ...++.++..+++.+-++  ..+                
T Consensus       364 isaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~--qGQ----------------  425 (508)
T KOG0275|consen  364 ISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM--QGQ----------------  425 (508)
T ss_pred             EEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec--cce----------------
Confidence            7776   99999999999988876422  22311  112  445666677776655332  111                


Q ss_pred             EeecCeeee---cCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeec
Q 005459          441 HLNLPVSYI---SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYID  516 (696)
Q Consensus       441 ~~~~~~~~~---~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~  516 (696)
                         +..++.   ...+..-++++||.|.++...|+|+.. .|++.+|+...+... +|++  |.|+.-+++--+.|.|. 
T Consensus       426 ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-hEkd--vIGl~HHPHqNllAsYs-  498 (508)
T KOG0275|consen  426 ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-HEKD--VIGLTHHPHQNLLASYS-  498 (508)
T ss_pred             ---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-cccc--ccccccCcccchhhhhc-
Confidence               233332   123456678999999999999999999 999999987766543 3443  77888887766556564 


Q ss_pred             CCCeEEEEEee
Q 005459          517 SSNTYELLFYP  527 (696)
Q Consensus       517 ~~~~~~lr~y~  527 (696)
                        .+.-+++|.
T Consensus       499 --EDgllKLWk  507 (508)
T KOG0275|consen  499 --EDGLLKLWK  507 (508)
T ss_pred             --ccchhhhcC
Confidence              345677773

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.89  E-value=1.4e-21  Score=183.14  Aligned_cols=247  Identities=15%  Similarity=0.231  Sum_probs=189.0

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeeccee-----cCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEe
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVS  296 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~  296 (696)
                      +++..||+.+++++.|+++++|+.......     .+|.+.+- +.++| ...++|+++.|.+|++||++. ++++..+.
T Consensus        26 v~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~-~k~~~~i~  104 (313)
T KOG1407|consen   26 VAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS-GKCTARIE  104 (313)
T ss_pred             EEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc-CcEEEEee
Confidence            447889999999999999999998765332     67888887 88887 578999999999999999998 78887776


Q ss_pred             eccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---
Q 005459          297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---  373 (696)
Q Consensus       297 ~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---  373 (696)
                      .         ++.=.-+.|+|||++++++..|..|...|..+.+.+.+.+..  -.+..+.|+-++  +.-.+-+|-   
T Consensus       105 ~---------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--~e~ne~~w~~~n--d~Fflt~GlG~v  171 (313)
T KOG1407|consen  105 T---------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK--FEVNEISWNNSN--DLFFLTNGLGCV  171 (313)
T ss_pred             c---------cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--ceeeeeeecCCC--CEEEEecCCceE
Confidence            5         555667899999999999999999999999888877665542  235556665333  112233442   


Q ss_pred             eeEEEcCCCceEEEEecCCcceEEEEe--c-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec
Q 005459          374 SMMQWDEYGYRLYAIEEGSSERVLIFS--F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS  450 (696)
Q Consensus       374 ~~~~W~~~~~~l~~~~~~~~~~v~~~~--~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  450 (696)
                      .++.|-  .-+.+..++.|....+++.  + ++.+++|+.|..+.+||+..--.                    ...+..
T Consensus       172 ~ILsyp--sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC--------------------~R~isR  229 (313)
T KOG1407|consen  172 EILSYP--SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC--------------------ERCISR  229 (313)
T ss_pred             EEEecc--ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh--------------------heeecc
Confidence            455553  4566777788887775554  4 99999999999999999754332                    456778


Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc--eEecCCccceeeeEEEeEeeeCcEEEEE
Q 005459          451 QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--WRVFGDITQEQKIQSKGLLWLGKIIVVC  512 (696)
Q Consensus       451 ~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~--w~~f~~~~~e~~~~v~~~~w~~~~lv~~  512 (696)
                      +.||||.++||-||++||+|++|..| +=++++|.  |++    ..+.  ....++|+++..+.|
T Consensus       230 ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI----~~~~--~t~tVAWHPk~~LLA  288 (313)
T KOG1407|consen  230 LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI----PCEG--PTFTVAWHPKRPLLA  288 (313)
T ss_pred             ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe----eccC--CceeEEecCCCceee
Confidence            89999999999999999999999999 99999986  322    1111  133689998766655

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.89  E-value=4.8e-23  Score=208.16  Aligned_cols=255  Identities=16%  Similarity=0.216  Sum_probs=192.9

Q ss_pred             ecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc
Q 005459          253 ELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG  330 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~  330 (696)
                      +.||.+.|. +.|.| .+.||++|+.|+.|+||++-+.+++++++.+        |..+|.+++|+++|..+.|++.|+.
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g--------H~k~Vrd~~~s~~g~~fLS~sfD~~  281 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG--------HRKPVRDASFNNCGTSFLSASFDRF  281 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc--------chhhhhhhhccccCCeeeeeeccee
Confidence            378999998 99999 8999999999999999999887899999999        9999999999999999999999999


Q ss_pred             EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEecCCcceEEEEec---ceee
Q 005459          331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCC  405 (696)
Q Consensus       331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~  405 (696)
                      +++||+++|++...+...  ...+++.|+|++  ....++.|+  .++.||.++++++.....|-+.+..+.|   ++..
T Consensus       282 lKlwDtETG~~~~~f~~~--~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rF  357 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHLD--KVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRF  357 (503)
T ss_pred             eeeeccccceEEEEEecC--CCceeeecCCCC--CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceE
Confidence            999999999999888754  457899999997  224444444  8999999999988888778888866666   8999


Q ss_pred             eeccCCCCceeeeeeecCCeEEEEec--CCCC------ccee-------------E-----EeecCeeeecCCCc--eEE
Q 005459          406 LNRGVSGMTYARQVIYGEDRLLVVQS--EDTD------ELKI-------------L-----HLNLPVSYISQNWP--VQH  457 (696)
Q Consensus       406 ~s~~~d~~~~~w~~~~~~~~~~~~~~--~~~~------~~~w-------------~-----~~~~~~~~~~~~~~--I~~  457 (696)
                      ++.+.|+++++|+....-.--++..-  +..|      .-.|             .     ....-..|.+|.-+  -..
T Consensus       358 issSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~  437 (503)
T KOG0282|consen  358 ISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ  437 (503)
T ss_pred             eeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence            99999999999987654332111110  0000      0111             0     00111245667543  345


Q ss_pred             EEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCc---EEEEEEeecCCCeEEEEEee
Q 005459          458 VAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK---IIVVCNYIDSSNTYELLFYP  527 (696)
Q Consensus       458 va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~---~lv~~~~~~~~~~~~lr~y~  527 (696)
                      +.|||||++|++|..||.+ +||.++-+  ++... +-.+-.|.++.|++.   .+++|     +-++.|++|.
T Consensus       438 v~fSpDG~~l~SGdsdG~v~~wdwkt~k--l~~~l-kah~~~ci~v~wHP~e~Skvat~-----~w~G~Ikiwd  503 (503)
T KOG0282|consen  438 VDFSPDGRTLCSGDSDGKVNFWDWKTTK--LVSKL-KAHDQPCIGVDWHPVEPSKVATC-----GWDGLIKIWD  503 (503)
T ss_pred             EEEcCCCCeEEeecCCccEEEeechhhh--hhhcc-ccCCcceEEEEecCCCcceeEec-----ccCceeEecC
Confidence            7999999999999999999 99988743  22221 112335889999854   45555     2346888884

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.89  E-value=2.1e-22  Score=192.57  Aligned_cols=238  Identities=16%  Similarity=0.212  Sum_probs=179.1

Q ss_pred             cCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-----cCCCCeEE-EEEcCCCcEEEEEecC
Q 005459          204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAPEQQILAVGTRR  277 (696)
Q Consensus       204 ~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~-v~~sp~~~~la~g~~d  277 (696)
                      +++|...|.+++          |.|...++++++.|++++++|..++...     ......+. ++|+|.|.+|++|...
T Consensus       168 lYDH~devn~l~----------FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdH  237 (430)
T KOG0640|consen  168 LYDHVDEVNDLD----------FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDH  237 (430)
T ss_pred             hhhccCccccee----------ecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCC
Confidence            344444566655          7788889999999999999998765322     12234555 9999999999999999


Q ss_pred             CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeec-ccccceecc
Q 005459          278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-ISLSSISSP  356 (696)
Q Consensus       278 g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~-~~~~~v~~~  356 (696)
                      -++++||+++ .++...-..     ...|++.|+++.+|+.|+..++|+.||.|++||--.++|+.++.. |+.+.|.+.
T Consensus       238 p~~rlYdv~T-~QcfvsanP-----d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa  311 (430)
T KOG0640|consen  238 PTLRLYDVNT-YQCFVSANP-----DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA  311 (430)
T ss_pred             CceeEEeccc-eeEeeecCc-----ccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE
Confidence            9999999998 443322211     124999999999999999999999999999999999999999986 777889999


Q ss_pred             cccCCCCCCccceecce---eeEEEcCCCceEEEEecCC--cceE---E--EEec-ceeeeec-cCCCCceeeeeeecCC
Q 005459          357 IVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS--SERV---L--IFSF-GKCCLNR-GVSGMTYARQVIYGED  424 (696)
Q Consensus       357 ~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~--~~~v---~--~~~~-~~~~~s~-~~d~~~~~w~~~~~~~  424 (696)
                      .|..++    +++++..   .+++|.+.+++++....|.  .++.   .  .|.- ..+++.- -..+++..||..+++.
T Consensus       312 ~Ftkn~----kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr  387 (430)
T KOG0640|consen  312 VFTKNG----KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR  387 (430)
T ss_pred             EEccCC----eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh
Confidence            999998    8887765   8999999999998877552  1111   1  1111 2222221 1234556677666554


Q ss_pred             eEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459          425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       425 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~  480 (696)
                      .                   -.--++||+++|++.-||.+.-+.++|.|-.+ .|-.
T Consensus       388 ~-------------------~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  388 V-------------------ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             h-------------------hhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            2                   22235899999999999999999999999999 8853

>PTZ00421 coronin; Provisional

Probab=99.89  E-value=6.4e-21  Score=208.09  Aligned_cols=225  Identities=14%  Similarity=0.130  Sum_probs=170.5

Q ss_pred             ecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCC------ceeeEEeeccCCCCCCCCCCeEEEEECCCC-CeEE
Q 005459          253 ELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESA------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFA  323 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~------~~~~~~~~~~~~~~~~h~g~V~~l~~spdg-~~la  323 (696)
                      +.+|.+.|. ++|+| ++++||+|+.||+|++||+.+.+      ..+..+.+        |...|.+++|+|++ +.|+
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g--------H~~~V~~l~f~P~~~~iLa  142 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG--------HTKKVGIVSFHPSAMNVLA  142 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC--------CCCcEEEEEeCcCCCCEEE
Confidence            468998887 99999 89999999999999999997622      24556666        99999999999986 6999


Q ss_pred             EEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE---E
Q 005459          324 VGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV---L  397 (696)
Q Consensus       324 sg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v---~  397 (696)
                      +|+.|++|++||+..+....++.+| ...|.+++|+|++    ..+++|+   ++++||+++++.+....+|....   .
T Consensus       143 Sgs~DgtVrIWDl~tg~~~~~l~~h-~~~V~sla~spdG----~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~  217 (493)
T PTZ00421        143 SAGADMVVNVWDVERGKAVEVIKCH-SDQITSLEWNLDG----SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRC  217 (493)
T ss_pred             EEeCCCEEEEEECCCCeEEEEEcCC-CCceEEEEEECCC----CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEE
Confidence            9999999999999999989899888 6779999999998    8888887   89999999999888887776542   3


Q ss_pred             EEec-ceeeeecc----CCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee-cCCCceEEEEEcCCCCEEEEEe
Q 005459          398 IFSF-GKCCLNRG----VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQHVAASKDGMFLAVAG  471 (696)
Q Consensus       398 ~~~~-~~~~~s~~----~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~I~~va~s~dG~~la~ag  471 (696)
                      .+.+ ...+++++    .|+.+++||+......                   ..... .+...+....|++|+++|++||
T Consensus       218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p-------------------~~~~~~d~~~~~~~~~~d~d~~~L~lgg  278 (493)
T PTZ00421        218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP-------------------YSTVDLDQSSALFIPFFDEDTNLLYIGS  278 (493)
T ss_pred             EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc-------------------eeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence            3333 44555443    5789999998765441                   11111 2234566778999999999998


Q ss_pred             C-CccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEE
Q 005459          472 L-HGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVV  511 (696)
Q Consensus       472 ~-dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~  511 (696)
                      . ||.+ +||+.+++.... .+... .-..+++++.+...+-
T Consensus       279 kgDg~Iriwdl~~~~~~~~-~~~~s-~~~~~g~~~~pk~~~d  318 (493)
T PTZ00421        279 KGEGNIRCFELMNERLTFC-SSYSS-VEPHKGLCMMPKWSLD  318 (493)
T ss_pred             eCCCeEEEEEeeCCceEEE-eeccC-CCCCcceEeccccccc
Confidence            5 9999 999998874322 11100 0124577777655443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.88  E-value=1.2e-19  Score=194.22  Aligned_cols=335  Identities=16%  Similarity=0.217  Sum_probs=233.9

Q ss_pred             EEEEEEccCc-ceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEc
Q 005459          211 IIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDL  285 (696)
Q Consensus       211 i~~~~~~~~~-~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~  285 (696)
                      |+++.|.+++ |..+..+.+|+          +++|+..+++.+   +++.+.++ +.-+|--..+|+|..||+|.++++
T Consensus       162 Ital~HP~TYLNKIvvGs~~G~----------lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNl  231 (910)
T KOG1539|consen  162 ITALLHPSTYLNKIVVGSSQGR----------LQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNL  231 (910)
T ss_pred             eeeEecchhheeeEEEeecCCc----------EEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEc
Confidence            8888877776 55555555555          555777776554   45555555 888999999999999999999999


Q ss_pred             cCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCC
Q 005459          286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC  364 (696)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~  364 (696)
                      +. .+.+.+++.        ..|+|++++|.-||. .||+|...|.+.+||+...++...++..|..++....|-|..  
T Consensus       232 K~-dkil~sFk~--------d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e--  300 (910)
T KOG1539|consen  232 KF-DKILMSFKQ--------DWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE--  300 (910)
T ss_pred             cc-CcEEEEEEc--------cccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC--
Confidence            98 788888885        469999999999998 556677778899999999999999987557778888888775  


Q ss_pred             Cccceecce---eeEEEcCCC----ceEEEEecCCcceEEEEec----ceeeeeccCCCCceeeeeeecCCeEEEEe---
Q 005459          365 KYEPLMSGT---SMMQWDEYG----YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQ---  430 (696)
Q Consensus       365 ~~~~l~sg~---~~~~W~~~~----~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~---  430 (696)
                        ..+++..   +.+.|-.++    .+++....||..+..++.|    +..+.+.+.|++.+.+.+.+...+--+.+   
T Consensus       301 --pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~  378 (910)
T KOG1539|consen  301 --PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN  378 (910)
T ss_pred             --ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence              4555544   666665442    3677788899888766665    78899999999887776543221100000   


Q ss_pred             --c----------------------CCCCc----------------cee--------EEeecCeeeecCCCceEEEEEcC
Q 005459          431 --S----------------------EDTDE----------------LKI--------LHLNLPVSYISQNWPVQHVAASK  462 (696)
Q Consensus       431 --~----------------------~~~~~----------------~~w--------~~~~~~~~~~~~~~~I~~va~s~  462 (696)
                        +                      ...-+                ..|        ++.--|..+......++++++|+
T Consensus       379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~  458 (910)
T KOG1539|consen  379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF  458 (910)
T ss_pred             ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence              0                      00000                123        12222333333446799999999


Q ss_pred             CCCEEEEEeCCccE-EEEccCCceE-ecCCccceeeeEEEeEeee--CcEEEEEEeec----------------------
Q 005459          463 DGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWL--GKIIVVCNYID----------------------  516 (696)
Q Consensus       463 dG~~la~ag~dG~i-~w~~~sg~w~-~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~----------------------  516 (696)
                      .|++...|...|.| +|++++|..+ .|++ .+..+..|+|++-.  +..+|+|++.+                      
T Consensus       459 CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~-~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~  537 (910)
T KOG1539|consen  459 CGNFVFIGYSKGTIDRFNMQSGIHRKSFGD-SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSI  537 (910)
T ss_pred             cCceEEEeccCCeEEEEEcccCeeeccccc-CccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCc
Confidence            99999999999999 9999999754 4542 22333446665543  44566664431                      


Q ss_pred             --------------CCCeEEEEEeeCC--CCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEEE
Q 005459          517 --------------SSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       517 --------------~~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~  571 (696)
                                    ..++..|++|+..  .....+-.|..++.+  +.++++|.-|++++-|+.|++|++-
T Consensus       538 ~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd--~~FS~DgrWlisasmD~tIr~wDlp  606 (910)
T KOG1539|consen  538 TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD--MTFSPDGRWLISASMDSTIRTWDLP  606 (910)
T ss_pred             ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee--eEeCCCCcEEEEeecCCcEEEEecc
Confidence                          1123455666553  233344456666666  8889999999999999999999864

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.88  E-value=9e-23  Score=195.77  Aligned_cols=280  Identities=14%  Similarity=0.210  Sum_probs=214.8

Q ss_pred             CeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459          258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS  337 (696)
Q Consensus       258 ~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~  337 (696)
                      .+-|..|||||++|++|+.||-|.|||..+ ++..+-++-..-.--.-+..+|.|+.||.|...||+|+.||.|++|.+.
T Consensus       215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~-GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~  293 (508)
T KOG0275|consen  215 HVECARFSPDGQYLVSGSVDGFIEVWNYTT-GKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE  293 (508)
T ss_pred             chhheeeCCCCceEeeccccceeeeehhcc-chhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence            345689999999999999999999999987 6554433321111112378899999999999999999999999999999


Q ss_pred             CCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCC
Q 005459          338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVS  411 (696)
Q Consensus       338 ~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d  411 (696)
                      ++.|+..+...|...|+++.|+.|+    ..+.+++   ++++-....++++..+.||..-|  ..|.. +..+++++.|
T Consensus       294 tG~ClRrFdrAHtkGvt~l~FSrD~----SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD  369 (508)
T KOG0275|consen  294 TGQCLRRFDRAHTKGVTCLSFSRDN----SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD  369 (508)
T ss_pred             cchHHHHhhhhhccCeeEEEEccCc----chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence            9999999986558889999999998    7777777   89999999999999999999998  45555 9999999999


Q ss_pred             CCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee--cCCCceEEEEEcCC-CCEEEEEeCCccE-EEEccCCceEe
Q 005459          412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI--SQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQKKWRV  487 (696)
Q Consensus       412 ~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~I~~va~s~d-G~~la~ag~dG~i-~w~~~sg~w~~  487 (696)
                      +++++|+..+++.                    ..+|.  +...+|.++-.-|. -..+++.-+..++ +-+++..--+.
T Consensus       370 gtvkvW~~KtteC--------------------~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrs  429 (508)
T KOG0275|consen  370 GTVKVWHGKTTEC--------------------LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRS  429 (508)
T ss_pred             ccEEEecCcchhh--------------------hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEee
Confidence            9999999888775                    44453  45668888877764 4578888888888 88988877777


Q ss_pred             cCCcccee-eeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC--CCCccceeEEeecCCccEEEEccCCEEEEEEcCce
Q 005459          488 FGDITQEQ-KIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFD  564 (696)
Q Consensus       488 f~~~~~e~-~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~  564 (696)
                      |..-.-|. +|....+.=-++.+.+.     ..+..+..|+..  .|+.....|...+-.  +...|.++.++.++.|+.
T Consensus       430 fsSGkREgGdFi~~~lSpkGewiYci-----gED~vlYCF~~~sG~LE~tl~VhEkdvIG--l~HHPHqNllAsYsEDgl  502 (508)
T KOG0275|consen  430 FSSGKREGGDFINAILSPKGEWIYCI-----GEDGVLYCFSVLSGKLERTLPVHEKDVIG--LTHHPHQNLLASYSEDGL  502 (508)
T ss_pred             eccCCccCCceEEEEecCCCcEEEEE-----ccCcEEEEEEeecCceeeeeecccccccc--cccCcccchhhhhcccch
Confidence            76555554 34333444445555543     344566666654  566655555554443  556688888888999999


Q ss_pred             EEEEE
Q 005459          565 VHIFH  569 (696)
Q Consensus       565 ~~l~~  569 (696)
                      .+||.
T Consensus       503 lKLWk  507 (508)
T KOG0275|consen  503 LKLWK  507 (508)
T ss_pred             hhhcC
Confidence            99884

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.88  E-value=2e-21  Score=191.00  Aligned_cols=262  Identities=12%  Similarity=0.132  Sum_probs=205.0

Q ss_pred             CcEEEEeeccCCceeeeeeecc--eecCCCCeEE-EEEc-C--CCcEEEEEecCCeEEEEEccCCCce---eeEEeeccC
Q 005459          230 GQLMSCSVSKKGLKLAEFIKID--KELGSGDAVC-ASIA-P--EQQILAVGTRRGVVELYDLAESASL---IRTVSLYDW  300 (696)
Q Consensus       230 G~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~v~-v~~s-p--~~~~la~g~~dg~v~vw~~~~~~~~---~~~~~~~~~  300 (696)
                      ++.+++++.|+++++|+..-..  ...||.+++. +++- +  ...++++++.|.++++|.++.....   ++.-++   
T Consensus       115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~G---  191 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRG---  191 (423)
T ss_pred             CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcc---
Confidence            7899999999999999975322  2378999887 5543 3  3346999999999999999873221   222234   


Q ss_pred             CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc-------------------------CCeeEEEeecccccceec
Q 005459          301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-------------------------GCRLMSTIRQISLSSISS  355 (696)
Q Consensus       301 ~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~-------------------------~~~~~~~l~~~~~~~v~~  355 (696)
                           |.++|-+++-.+||.++++|+.|.++++|+..                         .+..+-+|.|| ...|++
T Consensus       192 -----Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH-t~~Vs~  265 (423)
T KOG0313|consen  192 -----HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH-TEPVSS  265 (423)
T ss_pred             -----cccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc-ccceee
Confidence                 99999999999999999999999999999931                         12356788888 888999


Q ss_pred             ccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEe--c-ceeeeeccCCCCceeeeeeecCCeEEEE
Q 005459          356 PIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFS--F-GKCCLNRGVSGMTYARQVIYGEDRLLVV  429 (696)
Q Consensus       356 ~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~--~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~  429 (696)
                      +.|++.     ..+.+++   +++.||++++.+.....+. ..+.+++  + .+.+++||.|..+++||...++..+   
T Consensus       266 V~w~d~-----~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~---  336 (423)
T KOG0313|consen  266 VVWSDA-----TVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV---  336 (423)
T ss_pred             EEEcCC-----CceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCCCce---
Confidence            999885     4556666   9999999999988877653 3444444  3 7889999999999999999887754   


Q ss_pred             ecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCC-EEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCc
Q 005459          430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK  507 (696)
Q Consensus       430 ~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~-~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~  507 (696)
                                    +..+|.+|+..|.++.++|... +|++|+.||++ +||+++-+-.+|....++.  .|-.+.|+..
T Consensus       337 --------------v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D--Kvl~vdW~~~  400 (423)
T KOG0313|consen  337 --------------VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND--KVLSVDWNEG  400 (423)
T ss_pred             --------------eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc--eEEEEeccCC
Confidence                          3568999999999999999765 58999999999 9999998767776555533  4778999988


Q ss_pred             EEEEEEeecCCCeEEEEEeeCC
Q 005459          508 IIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       508 ~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      .+|+.+    +-+..||+|...
T Consensus       401 ~~IvSG----GaD~~l~i~~~~  418 (423)
T KOG0313|consen  401 GLIVSG----GADNKLRIFKGS  418 (423)
T ss_pred             ceEEec----cCcceEEEeccc
Confidence            655542    345789998654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.2e-20  Score=202.45  Aligned_cols=294  Identities=10%  Similarity=0.093  Sum_probs=213.7

Q ss_pred             EEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG  301 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~  301 (696)
                      |.|..-.++++-..+.|++||-.-+..+   .+|+++|+ ++|+|++.++++|+.|-+|+||+.++ .+++.++.+    
T Consensus        17 FHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-rrclftL~G----   91 (1202)
T KOG0292|consen   17 FHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-RRCLFTLLG----   91 (1202)
T ss_pred             cCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-ceehhhhcc----
Confidence            6777778888888999999998766443   78999999 99999999999999999999999998 889999999    


Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEE
Q 005459          302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQW  378 (696)
Q Consensus       302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W  378 (696)
                          |-.-|+.+.|.+.--.+.|+++|.||+||+..++.+++.+.|| ...|.|.+|+|..    +.++|++   ++++|
T Consensus        92 ----HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH-nHYVMcAqFhptE----DlIVSaSLDQTVRVW  162 (1202)
T KOG0292|consen   92 ----HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH-NHYVMCAQFHPTE----DLIVSASLDQTVRVW  162 (1202)
T ss_pred             ----ccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC-ceEEEeeccCCcc----ceEEEecccceEEEE
Confidence                9999999999999999999999999999999999999999999 8889999999987    8899988   99999


Q ss_pred             cCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEE
Q 005459          379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV  458 (696)
Q Consensus       379 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v  458 (696)
                      |..+-+--....+.-+....-..+..-+-++.|..                              +...+.||.-.|+-+
T Consensus       163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV------------------------------VK~VLEGHDRGVNwa  212 (1202)
T KOG0292|consen  163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV------------------------------VKHVLEGHDRGVNWA  212 (1202)
T ss_pred             eecchhccCCCCCCchhhhhccccchhhcCCcCee------------------------------eeeeecccccccceE
Confidence            98764322211110000000000000011111111                              123456888889999


Q ss_pred             EEcCCCCEEEEEeCCccE-EEEcc-CCceEecCCccceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCCCCCcc
Q 005459          459 AASKDGMFLAVAGLHGLI-LYDIR-QKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRYHLDQS  534 (696)
Q Consensus       459 a~s~dG~~la~ag~dG~i-~w~~~-sg~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~~l~~~  534 (696)
                      ||.|.-..+++|+.|..+ +|.++ ++-|.+=.-..|-++  |.++.+++  +.++..     +.+..||+|+-+   ..
T Consensus       213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nn--Vssvlfhp~q~lIlSn-----sEDksirVwDm~---kR  282 (1202)
T KOG0292|consen  213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNN--VSSVLFHPHQDLILSN-----SEDKSIRVWDMT---KR  282 (1202)
T ss_pred             EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCC--cceEEecCccceeEec-----CCCccEEEEecc---cc
Confidence            999999999999999999 99985 556875222223222  66777775  555543     667899999875   11


Q ss_pred             ceeEEeecC---CccEEEEccCCEEEEEEcCceEEEEEEEEec
Q 005459          535 SLLCRKSLL---AKPIVMDVYEDYILVTYRPFDVHIFHVKLFG  574 (696)
Q Consensus       535 ~~~~~~~~~---~~~l~~~~~~~~llv~~~d~~~~l~~~~~~~  574 (696)
                      ..+++..-.   --.++.-|..+.+. +..|+-+.+|.++.+.
T Consensus       283 t~v~tfrrendRFW~laahP~lNLfA-AgHDsGm~VFkleREr  324 (1202)
T KOG0292|consen  283 TSVQTFRRENDRFWILAAHPELNLFA-AGHDSGMIVFKLERER  324 (1202)
T ss_pred             cceeeeeccCCeEEEEEecCCcceee-eecCCceEEEEEcccC
Confidence            112221111   12344445455444 4678888899988653

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.4e-20  Score=180.88  Aligned_cols=322  Identities=14%  Similarity=0.121  Sum_probs=192.9

Q ss_pred             EEEeecCCceeeEEEeecChHHHhhc-ccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeE
Q 005459           42 IELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISL  120 (696)
Q Consensus        42 v~iW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l  120 (696)
                      ..=|+..||...   +.-....|..| +++++++||.||+.||+++.|+.|++|++.--..    ..|.           
T Consensus        63 ~~~~k~~q~~f~---Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----~eHr-----------  124 (420)
T KOG2096|consen   63 NDQWKAKQPTFV---HPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----KEHR-----------  124 (420)
T ss_pred             hhhhcccCCCcc---cchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----hhhh-----------
Confidence            556776554321   11122334444 5678999999999999999999999999963111    1111           


Q ss_pred             EEeeeccccccceeEEEeeeCCCeEEEEecCC-cEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCcc
Q 005459          121 VLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG-SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAF  199 (696)
Q Consensus       121 ~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g-~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~  199 (696)
                      .++  ..+..+......|++|-+.+++...+| .++.+..+..+.+...     ++...+.-..                
T Consensus       125 ~~R--~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~-----~~~v~~D~~~----------------  181 (420)
T KOG2096|consen  125 CIR--QNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGS-----HHFVHIDNLE----------------  181 (420)
T ss_pred             Hhh--ccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCC-----cccccccccc----------------
Confidence            001  112222334447788888888888876 4565554433333221     1110000000                


Q ss_pred             ccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecceecC----CCCeEEEEEcCCCcEEEEEe
Q 005459          200 VSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELG----SGDAVCASIAPEQQILAVGT  275 (696)
Q Consensus       200 ~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~v~v~~sp~~~~la~g~  275 (696)
                         .-..++..+.++.          +...++++++++.|.++.+|++. ++.+..    ...-..+++||+|++||+++
T Consensus       182 ---f~~kh~v~~i~iG----------iA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~g  247 (420)
T KOG2096|consen  182 ---FERKHQVDIINIG----------IAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSG  247 (420)
T ss_pred             ---cchhcccceEEEe----------ecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEec
Confidence               0012233344332          44667888889999999999987 554411    11222389999999999999


Q ss_pred             cCCeEEEEEccCC--C-----ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc
Q 005459          276 RRGVVELYDLAES--A-----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI  348 (696)
Q Consensus       276 ~dg~v~vw~~~~~--~-----~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~  348 (696)
                      ---.|+||.+--.  +     .....+++        |+..|..++|||+...+++.+.||+|++||+.-..-.   .  
T Consensus       248 FTpDVkVwE~~f~kdG~fqev~rvf~LkG--------H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~---~--  314 (420)
T KOG2096|consen  248 FTPDVKVWEPIFTKDGTFQEVKRVFSLKG--------HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA---G--  314 (420)
T ss_pred             CCCCceEEEEEeccCcchhhhhhhheecc--------chhheeeeeeCCCcceeEEEecCCcEEEeeccceEec---C--
Confidence            9999999996321  2     22345666        9999999999999999999999999999998533211   0  


Q ss_pred             cccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceE-EEEec-ceeeeeccCCCCceeeeeeecCCeE
Q 005459          349 SLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRL  426 (696)
Q Consensus       349 ~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v-~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~  426 (696)
                       +          |.    ..|..|+ .-+ ...+          ...+ +.++| ++.+ ..+...+++++....|++  
T Consensus       315 -q----------Dp----k~Lk~g~-~pl-~aag----------~~p~RL~lsP~g~~l-A~s~gs~l~~~~se~g~~--  364 (420)
T KOG2096|consen  315 -Q----------DP----KILKEGS-APL-HAAG----------SEPVRLELSPSGDSL-AVSFGSDLKVFASEDGKD--  364 (420)
T ss_pred             -C----------Cc----hHhhcCC-cch-hhcC----------CCceEEEeCCCCcEE-EeecCCceEEEEcccCcc--
Confidence             0          10    2222111 000 0001          1122 44445 3332 233334555555555554  


Q ss_pred             EEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEE
Q 005459          427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILY  478 (696)
Q Consensus       427 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w  478 (696)
                                       +|.--..|...|.+++|++||+|+|+.|++-..+.
T Consensus       365 -----------------~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~  399 (420)
T KOG2096|consen  365 -----------------YPELEDIHSTTISSISYSSDGKYIATCGDRYVRVI  399 (420)
T ss_pred             -----------------chhHHHhhcCceeeEEecCCCcEEeeecceeeeee
Confidence                             34444578899999999999999999997765433

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1e-19  Score=166.87  Aligned_cols=244  Identities=15%  Similarity=0.215  Sum_probs=168.9

Q ss_pred             CceEEEEEeCCcEEEEEcc-CeEEEeecC---Cc--------eeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecC
Q 005459           21 SQQIIYFKVNNGLLLIASP-CHIELWSSS---QH--------KVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS   88 (696)
Q Consensus        21 ~~~~v~fs~dg~lla~~~~-~~v~iW~~~---~~--------~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~d   88 (696)
                      ..+.|+|.|.|.|.|+.+. .+++|--.-   ++        .-+...++|..   .+.|.+++.+|||+|+.||+++.|
T Consensus        34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~k---hhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNK---HHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeecc---ccCccEEEEEecCccCeEEecCCC
Confidence            4556899999999999864 577776321   00        01123345543   246999999999999999999999


Q ss_pred             cEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEee-----eCCCeEEEEecCCcEEEEecCCcc
Q 005459           89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV-----SDNKHMLLGLSDGSLYSISWKGEF  163 (696)
Q Consensus        89 g~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~-----~~~~~llv~t~~g~i~~~~w~~~~  163 (696)
                      .+|++..........  .++.        ++        +..+++.|..++     ..+..|++....|...++.-+-..
T Consensus       111 k~ik~l~fn~dt~~~--~g~d--------le--------~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~  172 (350)
T KOG0641|consen  111 KTIKVLPFNADTCNA--TGHD--------LE--------FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR  172 (350)
T ss_pred             ceEEEEecccccccc--cCcc--------ee--------eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence            999987654332211  1111        11        223444554332     124556666555555444322111


Q ss_pred             ccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCce
Q 005459          164 YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK  243 (696)
Q Consensus       164 ~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~  243 (696)
                      ...+                                  ..+.++...|..+           .+=+|-.++++++|++++
T Consensus       173 g~~~----------------------------------~a~sghtghilal-----------yswn~~m~~sgsqdktir  207 (350)
T KOG0641|consen  173 GQGF----------------------------------HALSGHTGHILAL-----------YSWNGAMFASGSQDKTIR  207 (350)
T ss_pred             CCcc----------------------------------eeecCCcccEEEE-----------EEecCcEEEccCCCceEE
Confidence            1111                                  0122444455443           345788999999999999


Q ss_pred             eeeeeeccee-----cCC-----CCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEE
Q 005459          244 LAEFIKIDKE-----LGS-----GDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC  312 (696)
Q Consensus       244 ~~~~~~~~~~-----~~~-----~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~  312 (696)
                      .||+.-+.+.     ..|     ..++. +++.|.|++||+|-.|....+||++. ++.++.+..        |+..|+|
T Consensus       208 fwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~p--------hsadir~  278 (350)
T KOG0641|consen  208 FWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHP--------HSADIRC  278 (350)
T ss_pred             EEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC-CceeeeeCC--------CccceeE
Confidence            9998765443     112     24666 99999999999999999999999998 899999998        9999999


Q ss_pred             EEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459          313 IAWTPDNSAFAVGWKSRGLTVWSVSGC  339 (696)
Q Consensus       313 l~~spdg~~lasg~~Dg~v~vW~~~~~  339 (696)
                      +.|||...+|.+|+.|..|++=|+++.
T Consensus       279 vrfsp~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  279 VRFSPGAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             EEeCCCceEEEEecccceEEEeecccc
Confidence            999999999999999999999999874

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.87  E-value=9.9e-21  Score=206.84  Aligned_cols=269  Identities=16%  Similarity=0.208  Sum_probs=219.7

Q ss_pred             ceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccE
Q 005459          132 GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI  211 (696)
Q Consensus       132 ~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i  211 (696)
                      +..+.+.....+.+..++.+.+|+.  |+.......                                 ...+.+|...+
T Consensus       208 ~~~~~~~q~~~~~~~~~s~~~tl~~--~~~~~~~~i---------------------------------~~~l~GH~g~V  252 (537)
T KOG0274|consen  208 DHVVLCLQLHDGFFKSGSDDSTLHL--WDLNNGYLI---------------------------------LTRLVGHFGGV  252 (537)
T ss_pred             cchhhhheeecCeEEecCCCceeEE--eecccceEE---------------------------------EeeccCCCCCc
Confidence            3445566666788889999999865  554332211                                 12345667777


Q ss_pred             EEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCC
Q 005459          212 IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES  288 (696)
Q Consensus       212 ~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~  288 (696)
                      ..++          +..-+..+++++.|+++++||..++++.   .+|...+++ ++-...++++|+.|.+|+||++++ 
T Consensus       253 ~~l~----------~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~-~~~~~~~~~sgs~D~tVkVW~v~n-  320 (537)
T KOG0274|consen  253 WGLA----------FPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRC-LTIDPFLLVSGSRDNTVKVWDVTN-  320 (537)
T ss_pred             eeEE----------EecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEE-EEccCceEeeccCCceEEEEeccC-
Confidence            7766          3344778999999999999999888775   678887762 234556788899999999999998 


Q ss_pred             CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccc
Q 005459          289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP  368 (696)
Q Consensus       289 ~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~  368 (696)
                      +..++++.+        |+++|+++...  +..+++|+.|++|+||++..++++.++.+| ...|.++.+.+.     +.
T Consensus       321 ~~~l~l~~~--------h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH-~~~V~sl~~~~~-----~~  384 (537)
T KOG0274|consen  321 GACLNLLRG--------HTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH-TGRVYSLIVDSE-----NR  384 (537)
T ss_pred             cceEEEecc--------ccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCC-cceEEEEEecCc-----ce
Confidence            889999998        99999999998  889999999999999999999999999998 888999988663     45


Q ss_pred             eecce---eeEEEcCCCc-eEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEee
Q 005459          369 LMSGT---SMMQWDEYGY-RLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN  443 (696)
Q Consensus       369 l~sg~---~~~~W~~~~~-~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~  443 (696)
                      +.+|+   ++++||+++. +++.++.+|..-+..+.+ .+.+++++.|+++++||...++.                   
T Consensus       385 ~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~-------------------  445 (537)
T KOG0274|consen  385 LLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGEC-------------------  445 (537)
T ss_pred             EEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCce-------------------
Confidence            67777   8999999999 999999999988877777 89999999999999999888876                   


Q ss_pred             cCeeeec-CCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCce
Q 005459          444 LPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW  485 (696)
Q Consensus       444 ~~~~~~~-~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w  485 (696)
                       ..++.+ |...|.++++.  -..+++++.||.+ +||+.+++-
T Consensus       446 -~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~  486 (537)
T KOG0274|consen  446 -LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL  486 (537)
T ss_pred             -eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence             345555 56778888877  4589999999999 999999864

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.3e-18  Score=180.94  Aligned_cols=241  Identities=14%  Similarity=0.161  Sum_probs=169.8

Q ss_pred             CCCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEE
Q 005459           19 PSSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQ   97 (696)
Q Consensus        19 ~~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~   97 (696)
                      |+....++||.+.+.||++ +++.|.||+.+ +.    ++....-...+.+.+-.++|+ +|.+|.....+|.|.-||+.
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~-~~----w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~   98 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLS-NN----WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLH   98 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccC-CC----ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecc
Confidence            4556668899998888888 78999999996 42    111111111234667789999 67778888899999999998


Q ss_pred             ecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCc
Q 005459           98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS  177 (696)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~  177 (696)
                      ..+....   .+..+..+|++                  ++.+.++.+++|++||.+..+  .+....-+-         
T Consensus        99 ~lk~~~~---~d~~gg~IWsi------------------ai~p~~~~l~IgcddGvl~~~--s~~p~~I~~---------  146 (691)
T KOG2048|consen   99 TLKQKYN---IDSNGGAIWSI------------------AINPENTILAIGCDDGVLYDF--SIGPDKITY---------  146 (691)
T ss_pred             cCceeEE---ecCCCcceeEE------------------EeCCccceEEeecCCceEEEE--ecCCceEEE---------
Confidence            7654322   12223345543                  444556889999999955543  333221110         


Q ss_pred             ccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecceec---
Q 005459          178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL---  254 (696)
Q Consensus       178 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~---  254 (696)
                                             ...+...++.+.++.          +.++|..++.++.|+.+++||...+....   
T Consensus       147 -----------------------~r~l~rq~sRvLsls----------w~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~  193 (691)
T KOG2048|consen  147 -----------------------KRSLMRQKSRVLSLS----------WNPTGTKIAGGSIDGVIRIWDVKSGQTLHIIT  193 (691)
T ss_pred             -----------------------EeecccccceEEEEE----------ecCCccEEEecccCceEEEEEcCCCceEEEee
Confidence                                   001112245566655          77889999999999999999988765431   


Q ss_pred             ------CCCC--eEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE
Q 005459          255 ------GSGD--AVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG  325 (696)
Q Consensus       255 ------~~~~--~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg  325 (696)
                            .-.+  .+. +.|- ....||+|...|+|++||... +.+++..+.        |.+-|.+|+-++++.+++++
T Consensus       194 ~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~-gTLiqS~~~--------h~adVl~Lav~~~~d~vfsa  263 (691)
T KOG2048|consen  194 MQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIF-GTLIQSHSC--------HDADVLALAVADNEDRVFSA  263 (691)
T ss_pred             ecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccC-cchhhhhhh--------hhcceeEEEEcCCCCeEEEc
Confidence                  1112  233 4444 566899999999999999988 888888888        99999999999999999999


Q ss_pred             EcCCcEEEEEccCCe
Q 005459          326 WKSRGLTVWSVSGCR  340 (696)
Q Consensus       326 ~~Dg~v~vW~~~~~~  340 (696)
                      +.|+.+.-+...+..
T Consensus       264 Gvd~~ii~~~~~~~~  278 (691)
T KOG2048|consen  264 GVDPKIIQYSLTTNK  278 (691)
T ss_pred             cCCCceEEEEecCCc
Confidence            999999999887663

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=5.1e-21  Score=206.30  Aligned_cols=248  Identities=15%  Similarity=0.153  Sum_probs=172.1

Q ss_pred             CCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC----------------------cee---e-EEeec---------
Q 005459          255 GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA----------------------SLI---R-TVSLY---------  298 (696)
Q Consensus       255 ~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~----------------------~~~---~-~~~~~---------  298 (696)
                      .|.++|+ +-||+||++||+|++||.||||.+....                      .+.   . ...+.         
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            7999999 9999999999999999999999986500                      000   0 00000         


Q ss_pred             ----cC----------C--CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459          299 ----DW----------G--YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       299 ----~~----------~--~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                          .+          |  .-.+|++.|.+|+||-+ ++|.+++.|+|||+|++....|+++|..  .+-|+|++|+|.+
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~H--ndfVTcVaFnPvD  421 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSH--NDFVTCVAFNPVD  421 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEec--CCeeEEEEecccC
Confidence                00          0  01289999999999976 5889999999999999999999999863  6789999999986


Q ss_pred             CCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEe
Q 005459          363 DCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL  442 (696)
Q Consensus       363 ~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~  442 (696)
                      +   +++                                    ++||.|+.+++|.+...+-                  
T Consensus       422 D---ryF------------------------------------iSGSLD~KvRiWsI~d~~V------------------  444 (712)
T KOG0283|consen  422 D---RYF------------------------------------ISGSLDGKVRLWSISDKKV------------------  444 (712)
T ss_pred             C---CcE------------------------------------eecccccceEEeecCcCee------------------
Confidence            3   444                                    4556666666666543321                  


Q ss_pred             ecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCc-----cceeeeEEEeEeee---CcEEEEEE
Q 005459          443 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDI-----TQEQKIQSKGLLWL---GKIIVVCN  513 (696)
Q Consensus       443 ~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~-----~~e~~~~v~~~~w~---~~~lv~~~  513 (696)
                         ..+..-..-|.+++|+|||++.++|+-+|.. +|++..-+..+-...     ...+.-.|+|+...   .+.+++. 
T Consensus       445 ---v~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT-  520 (712)
T KOG0283|consen  445 ---VDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT-  520 (712)
T ss_pred             ---EeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe-
Confidence               1111112459999999999999999999999 999877654321110     11111248888876   3334444 


Q ss_pred             eecCCCeEEEEEeeCC--CCCccceeEEeecCCcc-EEEEccCCEEEEEEcCceEEEEEEE
Q 005459          514 YIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKP-IVMDVYEDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       514 ~~~~~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~-l~~~~~~~~llv~~~d~~~~l~~~~  571 (696)
                          +.+..||||+..  .|.+.+-.+.- ..++. -.++.+|.+++.++.|..|.+|++.
T Consensus       521 ----SnDSrIRI~d~~~~~lv~KfKG~~n-~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  521 ----SNDSRIRIYDGRDKDLVHKFKGFRN-TSSQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             ----cCCCceEEEeccchhhhhhhccccc-CCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence                456799999983  45444332222 22322 2455689999999999999999875

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.87  E-value=1e-20  Score=192.26  Aligned_cols=284  Identities=9%  Similarity=0.099  Sum_probs=190.8

Q ss_pred             ccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEe
Q 005459           70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL  149 (696)
Q Consensus        70 ~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t  149 (696)
                      +.++++-|.|.++++++-|-++++||.+.-......                ++.-.+...+......+++.++.|++.+
T Consensus       170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~----------------fr~l~P~E~h~i~sl~ys~Tg~~iLvvs  233 (641)
T KOG0772|consen  170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS----------------FRQLQPCETHQINSLQYSVTGDQILVVS  233 (641)
T ss_pred             EEEeeecCCCceeeeccccceEEEEecccccccchh----------------hhccCcccccccceeeecCCCCeEEEEe
Confidence            467999999999999999999999999743321110                0100111222223334566789999999


Q ss_pred             cCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCcccc--CCcCCCcccEEEEEEccCcceEEEEE
Q 005459          150 SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVS--DHKFPISSAIIWLELCLPMRLLFVLY  227 (696)
Q Consensus       150 ~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~s  227 (696)
                      .....++++-+|.....+.                 .+.|         ..+  ....+|-..+++-+|          .
T Consensus       234 g~aqakl~DRdG~~~~e~~-----------------KGDQ---------YI~Dm~nTKGHia~lt~g~w----------h  277 (641)
T KOG0772|consen  234 GSAQAKLLDRDGFEIVEFS-----------------KGDQ---------YIRDMYNTKGHIAELTCGCW----------H  277 (641)
T ss_pred             cCcceeEEccCCceeeeee-----------------ccch---------hhhhhhccCCceeeeecccc----------c
Confidence            9999999888876544331                 1111         000  011233344455454          4


Q ss_pred             eCC-cEEEEeeccCCceeeeeeeccee---------cC-CCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCC-ceeeEE
Q 005459          228 SNG-QLMSCSVSKKGLKLAEFIKIDKE---------LG-SGDAVCASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTV  295 (696)
Q Consensus       228 ~dG-~~~~~~~~d~~~~~~~~~~~~~~---------~~-~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~-~~~~~~  295 (696)
                      |+. ..+++++.|+++++|++...+..         .+ ...++.|+||||+++||.||.||.|.+|+...-. .....+
T Consensus       278 P~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v  357 (641)
T KOG0772|consen  278 PDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV  357 (641)
T ss_pred             cCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe
Confidence            443 36777889999999998765321         11 1233459999999999999999999999975411 222222


Q ss_pred             eeccCCCCCCCCC--CeEEEEECCCCCeEEEEEcCCcEEEEEccCC-eeEEEeec-ccccceecccccCCCCCCccceec
Q 005459          296 SLYDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMS  371 (696)
Q Consensus       296 ~~~~~~~~~~h~g--~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~-~~~~~l~~-~~~~~v~~~~~sp~~~~~~~~l~s  371 (696)
                      +.       +|.+  .|+||+||+||++|++-+.|++++|||+... +++.+..+ ...-.-+.+.|||+.    +.+++
T Consensus       358 k~-------AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~----kli~T  426 (641)
T KOG0772|consen  358 KD-------AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD----KLILT  426 (641)
T ss_pred             ee-------ccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc----eEEEe
Confidence            22       3877  8999999999999999999999999999643 34444433 112345678999998    88888


Q ss_pred             ce---------eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCcee
Q 005459          372 GT---------SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYA  416 (696)
Q Consensus       372 g~---------~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~  416 (696)
                      |.         +..+++..+.+.+....-....|  ..+++ -+.+..++.||++++
T Consensus       427 GtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v  483 (641)
T KOG0772|consen  427 GTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHV  483 (641)
T ss_pred             cccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEE
Confidence            86         57778888888777665445556  44455 667788888888765

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.87  E-value=9.4e-21  Score=178.13  Aligned_cols=280  Identities=11%  Similarity=0.106  Sum_probs=211.7

Q ss_pred             ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459          253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL  331 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v  331 (696)
                      +.||+.++. +.+|.+|.+|.+++.|.+..||-..+ ++.+.+..+        |+|.|+|+..+-+.++|++|+.|.++
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty~G--------HtGavW~~Did~~s~~liTGSAD~t~   76 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTYDG--------HTGAVWCCDIDWDSKHLITGSADQTA   76 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecC-CceeeeecC--------CCceEEEEEecCCcceeeecccccee
Confidence            478999998 99999999999999999999998777 889999999        99999999999999999999999999


Q ss_pred             EEEEccCCeeEEEeecccccceecccccCCCCCCccceecc--------eeeEEEcCC-------CceEEEEecCCcceE
Q 005459          332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--------TSMMQWDEY-------GYRLYAIEEGSSERV  396 (696)
Q Consensus       332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg--------~~~~~W~~~-------~~~l~~~~~~~~~~v  396 (696)
                      ++||+.+++++.+++-.  ..|..+.|++++    ..++..        +.+-+++.+       +.+.++...-+...+
T Consensus        77 kLWDv~tGk~la~~k~~--~~Vk~~~F~~~g----n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski  150 (327)
T KOG0643|consen   77 KLWDVETGKQLATWKTN--SPVKRVDFSFGG----NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI  150 (327)
T ss_pred             EEEEcCCCcEEEEeecC--CeeEEEeeccCC----cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence            99999999999998864  578999999988    333211        255566665       445444444444555


Q ss_pred             --EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCC
Q 005459          397 --LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH  473 (696)
Q Consensus       397 --~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~d  473 (696)
                        ..+.+ ++.+++|..|+.+..||+..+..                   +...-..|+..|..+.+|||..++++|+.|
T Consensus       151 t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~-------------------~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D  211 (327)
T KOG0643|consen  151 TSALWGPLGETIIAGHEDGSISIYDARTGKE-------------------LVDSDEEHSSKINDLQFSRDRTYFITGSKD  211 (327)
T ss_pred             eeeeecccCCEEEEecCCCcEEEEEcccCce-------------------eeechhhhccccccccccCCcceEEecccC
Confidence              55566 99999999999999999988765                   244455788899999999999999999999


Q ss_pred             ccE-EEEccCCc-eEecCCccceeeeEEEeEeeeCcEEEEEEee---------cCCCeEEEEEeeCC---CCCccceeEE
Q 005459          474 GLI-LYDIRQKK-WRVFGDITQEQKIQSKGLLWLGKIIVVCNYI---------DSSNTYELLFYPRY---HLDQSSLLCR  539 (696)
Q Consensus       474 G~i-~w~~~sg~-w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~---------~~~~~~~lr~y~~~---~l~~~~~~~~  539 (696)
                      .++ +||+.+-. .|.|..+..-+   +..+.=..+.+|.++..         ...+.+|-|||..-   .+ ...-.|-
T Consensus       212 ttakl~D~~tl~v~Kty~te~PvN---~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEi-grvkGHF  287 (327)
T KOG0643|consen  212 TTAKLVDVRTLEVLKTYTTERPVN---TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEI-GRVKGHF  287 (327)
T ss_pred             ccceeeeccceeeEEEeeeccccc---ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHh-ccccccc
Confidence            999 99998754 24443322211   11222233444433222         12344678888752   11 1122344


Q ss_pred             eecCCccEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459          540 KSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL  572 (696)
Q Consensus       540 ~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~  572 (696)
                      -++.+  +++.|.|.....+..|+.++|++++.
T Consensus       288 GPINs--vAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  288 GPINS--VAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cCcce--eEECCCCcccccCCCCceEEEEEecc
Confidence            44544  89999999999999999999998874

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.87  E-value=4.3e-20  Score=173.70  Aligned_cols=254  Identities=16%  Similarity=0.169  Sum_probs=197.8

Q ss_pred             CcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCC
Q 005459          203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRG  278 (696)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg  278 (696)
                      .+.+|..+++.+.          +..+|.++++++.|.++.+|-..+++++   .||.++|. ++++-+.+.+++|+.|.
T Consensus         5 ~l~GHERplTqiK----------yN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~   74 (327)
T KOG0643|consen    5 LLQGHERPLTQIK----------YNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQ   74 (327)
T ss_pred             ccccCccccceEE----------ecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccc
Confidence            3456777788877          4568999999999999999988887776   79999998 99999999999999999


Q ss_pred             eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-----CCcEEEEEcc-------CCeeEEEee
Q 005459          279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-----SRGLTVWSVS-------GCRLMSTIR  346 (696)
Q Consensus       279 ~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-----Dg~v~vW~~~-------~~~~~~~l~  346 (696)
                      ++++||+.+ ++.+.+++.         ..+|..+.|+++|++++...+     -+.|.++++.       +..+...+.
T Consensus        75 t~kLWDv~t-Gk~la~~k~---------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~  144 (327)
T KOG0643|consen   75 TAKLWDVET-GKQLATWKT---------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP  144 (327)
T ss_pred             eeEEEEcCC-CcEEEEeec---------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence            999999998 888888875         678999999999998877654     3579999986       444455665


Q ss_pred             cccccceecccccCCCCCCccceecce---eeEEEcCCCce-EEEEecCCcceE--EEEec-ceeeeeccCCCCceeeee
Q 005459          347 QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR-LYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQV  419 (696)
Q Consensus       347 ~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~-l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~  419 (696)
                      -+ .+.++...|+|-+    +.+++|-   .+..||+.+++ ++...+.|...|  ++++. ....+|+|.|.+.++||+
T Consensus       145 t~-~skit~a~Wg~l~----~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~  219 (327)
T KOG0643|consen  145 TP-DSKITSALWGPLG----ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDV  219 (327)
T ss_pred             CC-ccceeeeeecccC----CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeec
Confidence            55 5778888999988    8888886   89999999864 455556788888  55555 778999999999999998


Q ss_pred             eecC--------------------CeEEEEecCCCCcc--------ee-----EEe--ecCeeeecCCCceEEEEEcCCC
Q 005459          420 IYGE--------------------DRLLVVQSEDTDEL--------KI-----LHL--NLPVSYISQNWPVQHVAASKDG  464 (696)
Q Consensus       420 ~~~~--------------------~~~~~~~~~~~~~~--------~w-----~~~--~~~~~~~~~~~~I~~va~s~dG  464 (696)
                      .+-+                    +.+.+-.|.+..+.        +.     +.+  .-...+.+|-+||+++||+|||
T Consensus       220 ~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG  299 (327)
T KOG0643|consen  220 RTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG  299 (327)
T ss_pred             cceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC
Confidence            6532                    22223333333221        00     111  1123567999999999999999


Q ss_pred             CEEEEEeCCccE-EEEcc
Q 005459          465 MFLAVAGLHGLI-LYDIR  481 (696)
Q Consensus       465 ~~la~ag~dG~i-~w~~~  481 (696)
                      +..++||+||.+ +.-..
T Consensus       300 ksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  300 KSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             cccccCCCCceEEEEEec
Confidence            999999999999 66443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=2.4e-20  Score=201.16  Aligned_cols=201  Identities=13%  Similarity=0.157  Sum_probs=145.2

Q ss_pred             cCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEE-EEEcC-CCcEEEEEecCCe
Q 005459          204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAP-EQQILAVGTRRGV  279 (696)
Q Consensus       204 ~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~-v~~sp-~~~~la~g~~dg~  279 (696)
                      +.+|...|.++.|           +...++++++-|+|+++|+....+++  ..|.+-|+ |+|+| |.+++++||-||.
T Consensus       365 f~GHt~DILDlSW-----------SKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~K  433 (712)
T KOG0283|consen  365 FKGHTADILDLSW-----------SKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGK  433 (712)
T ss_pred             hhccchhheeccc-----------ccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccc
Confidence            4567777888774           34567888899999999998876665  56888876 99999 7899999999999


Q ss_pred             EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceeccccc
Q 005459          280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK  359 (696)
Q Consensus       280 v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~s  359 (696)
                      ||||++.+ .+... +..        -..-|++++|+|||+..+.|..+|.++++++.+.++.....-+..         
T Consensus       434 vRiWsI~d-~~Vv~-W~D--------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~---------  494 (712)
T KOG0283|consen  434 VRLWSISD-KKVVD-WND--------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH---------  494 (712)
T ss_pred             eEEeecCc-CeeEe-ehh--------hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec---------
Confidence            99999987 33332 222        246799999999999999999999999999999887654432100         


Q ss_pred             CCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEec--c--eeeeeccCCCCceeeeeeecCCeEEEEecCCCC
Q 005459          360 PNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF--G--KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD  435 (696)
Q Consensus       360 p~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~--~--~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~  435 (696)
                      + .    +                    . ..|. +|..|.|  +  ..++..+.|..|+++|..+.+.           
T Consensus       495 ~-~----K--------------------k-~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l-----------  536 (712)
T KOG0283|consen  495 N-K----K--------------------K-KQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL-----------  536 (712)
T ss_pred             c-C----c--------------------c-ccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhh-----------
Confidence            0 0    0                    0 0122 5644444  2  2355567788888877643332           


Q ss_pred             cceeEEeecCeeeecC---CCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459          436 ELKILHLNLPVSYISQ---NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       436 ~~~w~~~~~~~~~~~~---~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s  482 (696)
                               ...|.++   +.. ..+.|+.||++|++|++|..+ +|+...
T Consensus       537 ---------v~KfKG~~n~~SQ-~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  537 ---------VHKFKGFRNTSSQ-ISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             ---------hhhhcccccCCcc-eeeeEccCCCEEEEeecCceEEEEeCCC
Confidence                     3445532   223 356899999999999999999 999854

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.3e-20  Score=176.09  Aligned_cols=220  Identities=15%  Similarity=0.114  Sum_probs=178.6

Q ss_pred             CCcEEEEeeccCCceeeeeeecc----eecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC
Q 005459          229 NGQLMSCSVSKKGLKLAEFIKID----KELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY  302 (696)
Q Consensus       229 dG~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~  302 (696)
                      ....+++++.||++++||...+.    +++.|..-|. +.+|+ +.+.+.+++.||+||+|+..- ...+.++.+     
T Consensus        72 ~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r-~~Sv~Tf~g-----  145 (311)
T KOG0277|consen   72 HENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR-PNSVQTFNG-----  145 (311)
T ss_pred             CcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC-CcceEeecC-----
Confidence            34567777889999999965432    2367888887 99999 566778889999999999887 677889999     


Q ss_pred             CCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEE
Q 005459          303 SMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQW  378 (696)
Q Consensus       303 ~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W  378 (696)
                         |..-|...+||| +++++|+++.|+++++||+...-....+..| ...+.++.|+....   ..+++|.   .++.|
T Consensus       146 ---h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah-~~Eil~cdw~ky~~---~vl~Tg~vd~~vr~w  218 (311)
T KOG0277|consen  146 ---HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH-NSEILCCDWSKYNH---NVLATGGVDNLVRGW  218 (311)
T ss_pred             ---CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEec-cceeEeecccccCC---cEEEecCCCceEEEE
Confidence               999999999999 8899999999999999998543222337777 56788888876542   6677776   89999


Q ss_pred             cCCCce-EEEEecCCcceE--EEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC
Q 005459          379 DEYGYR-LYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW  453 (696)
Q Consensus       379 ~~~~~~-l~~~~~~~~~~v--~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  453 (696)
                      |++..+ .+..+.+|.-.|  +.+++  ...++|+++|+++++|+...++.                   ...++..|..
T Consensus       219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds-------------------~~e~~~~HtE  279 (311)
T KOG0277|consen  219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS-------------------AIETVDHHTE  279 (311)
T ss_pred             ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh-------------------hhhhhhccce
Confidence            998754 455667888888  66666  66789999999999999886665                   3567888999


Q ss_pred             ceEEEEEcC-CCCEEEEEeCCccE-EEEc
Q 005459          454 PVQHVAASK-DGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       454 ~I~~va~s~-dG~~la~ag~dG~i-~w~~  480 (696)
                      -+..+.||+ ++.++|+.|-|+++ +|+.
T Consensus       280 Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  280 FVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EEeccccccccCceeeecccccceeeecc
Confidence            999999997 67899999999999 9984

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1e-20  Score=176.76  Aligned_cols=235  Identities=14%  Similarity=0.203  Sum_probs=183.1

Q ss_pred             CCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEE
Q 005459          256 SGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLT  332 (696)
Q Consensus       256 ~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~  332 (696)
                      -++++. ++||+. .+.+++++.||++++||......+++.++.        |...|.++.|++ +++.+.+++.|++||
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE--------H~~EV~Svdwn~~~r~~~ltsSWD~TiK  130 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE--------HKREVYSVDWNTVRRRIFLTSSWDGTIK  130 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh--------hhhheEEeccccccceeEEeeccCCceE
Confidence            467777 999996 567888999999999998776678888887        999999999998 777888899999999


Q ss_pred             EEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec----ceee
Q 005459          333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCC  405 (696)
Q Consensus       333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~  405 (696)
                      +|+..-+.-++|+.|| .+.|...+|+|..+   ..+++.+   +.++||.+...-.+....|...+++.++    -..+
T Consensus       131 LW~~~r~~Sv~Tf~gh-~~~Iy~a~~sp~~~---nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl  206 (311)
T KOG0277|consen  131 LWDPNRPNSVQTFNGH-NSCIYQAAFSPHIP---NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVL  206 (311)
T ss_pred             eecCCCCcceEeecCC-ccEEEEEecCCCCC---CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEE
Confidence            9999999999999998 88899999999863   5555554   8999998754444447788888888887    4468


Q ss_pred             eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCC-EEEEEeCCccE-EEEccCC
Q 005459          406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQK  483 (696)
Q Consensus       406 ~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~-~la~ag~dG~i-~w~~~sg  483 (696)
                      +|++.|+.++.||+..-..                   ....+.+|.-.||.+.|||--. .||+++-|=++ +||...+
T Consensus       207 ~Tg~vd~~vr~wDir~~r~-------------------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~  267 (311)
T KOG0277|consen  207 ATGGVDNLVRGWDIRNLRT-------------------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ  267 (311)
T ss_pred             EecCCCceEEEEehhhccc-------------------cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence            9999999999999877654                   1346679999999999999764 78999999999 9998755


Q ss_pred             ceEecCCccceeeeEEEeEeee---CcEEEEEEeecCCCeEEEEEeeC
Q 005459          484 KWRVFGDITQEQKIQSKGLLWL---GKIIVVCNYIDSSNTYELLFYPR  528 (696)
Q Consensus       484 ~w~~f~~~~~e~~~~v~~~~w~---~~~lv~~~~~~~~~~~~lr~y~~  528 (696)
                      .- ..+...+..+| |.|+.|.   +..+..+     +-+..+.+|..
T Consensus       268 ds-~~e~~~~HtEF-v~g~Dws~~~~~~vAs~-----gWDe~l~Vw~p  308 (311)
T KOG0277|consen  268 DS-AIETVDHHTEF-VCGLDWSLFDPGQVAST-----GWDELLYVWNP  308 (311)
T ss_pred             hh-hhhhhhccceE-EeccccccccCceeeec-----ccccceeeecc
Confidence            31 11122233344 4566664   4444444     33456778753

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=7.8e-20  Score=175.75  Aligned_cols=287  Identities=14%  Similarity=0.158  Sum_probs=192.7

Q ss_pred             CCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEe-cCcEEEEEEEE
Q 005459           20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQ   97 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t-~dg~l~l~~l~   97 (696)
                      +...-++||.||+.||++ .|++|+||+++ . . ..+-.|..+.--+++.-+.+.|+||-+-+++.. ....|++|.+.
T Consensus        87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~-D-F-~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~  163 (420)
T KOG2096|consen   87 KEVTDVAFSSDGKKLATISGDRSIRLWDVR-D-F-ENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV  163 (420)
T ss_pred             CceeeeEEcCCCceeEEEeCCceEEEEecc-h-h-hhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence            345558999999999998 57899999996 3 1 112224444334678889999999999777754 45679999997


Q ss_pred             ecCcccccCCCCCCCceeeeeeEEEeeeccccccceeE--EEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCC
Q 005459           98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSND  175 (696)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~  175 (696)
                      ......+.....+    +..+++  +..     +...+  ..++..++.|+.++.|..|.+|+..|.......       
T Consensus       164 K~~dG~~~~~~v~----~D~~~f--~~k-----h~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~id-------  225 (420)
T KOG2096|consen  164 KKTDGSGSHHFVH----IDNLEF--ERK-----HQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSID-------  225 (420)
T ss_pred             ecccCCCCccccc----cccccc--chh-----cccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeec-------
Confidence            5443211100000    011111  111     11111  234556788999999999988766654433210       


Q ss_pred             CcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc----
Q 005459          176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----  251 (696)
Q Consensus       176 ~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~----  251 (696)
                                                              -....+.-++++||||++++++-.-.+++|+..-.+    
T Consensus       226 ----------------------------------------tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~f  265 (420)
T KOG2096|consen  226 ----------------------------------------TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTF  265 (420)
T ss_pred             ----------------------------------------cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcch
Confidence                                                    000113346789999999998887789999876322    


Q ss_pred             -------eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC---CceeeEEeeccCCCCCCCCCCeEEEEECCCCC
Q 005459          252 -------KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES---ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS  320 (696)
Q Consensus       252 -------~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~---~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~  320 (696)
                             .+.||..+|. ++|||+.+.+++.+.||++|+||++-.   ++-.+.++....|....-..++ .|+.||.|+
T Consensus       266 qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~  344 (420)
T KOG2096|consen  266 QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGD  344 (420)
T ss_pred             hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCc
Confidence                   1378999998 999999999999999999999998641   1111122211111111122334 899999999


Q ss_pred             eEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459          321 AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT  373 (696)
Q Consensus       321 ~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~  373 (696)
                      .||.... .+++++..+.++..-+++..+...|++++|+|++    +++++..
T Consensus       345 ~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g----~~~atcG  392 (420)
T KOG2096|consen  345 SLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDG----KYIATCG  392 (420)
T ss_pred             EEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCC----cEEeeec
Confidence            9998877 6899999999888888877557789999999998    7777654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.86  E-value=4.3e-19  Score=186.53  Aligned_cols=392  Identities=12%  Similarity=0.098  Sum_probs=251.4

Q ss_pred             cccEEEEcCCC---cEEEEEecCcEEEEEEEEecCcccc----cC----CCCCCCceeeeeeEEEeeeccccccceeEEE
Q 005459           69 ENLQAVWSPDT---KLIAVVTSSLYLHIFKVQITEKSIQ----IG----GKQPSGLFFIKISLVLNEQLPFAEKGLSVSN  137 (696)
Q Consensus        69 ~~~~v~wsPDg---~~lav~t~dg~l~l~~l~~~~~~~~----~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~  137 (696)
                      -+.+++|+.-+   -+||+++.|.|||||++........    ..    ...+.-..+..+.+.+.....+.+++.-|.+
T Consensus       193 WIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~s  272 (764)
T KOG1063|consen  193 WIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYS  272 (764)
T ss_pred             hhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEE
Confidence            45667776544   4899999999999999976542110    00    0011111222233333444445577777777


Q ss_pred             e--eeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEE
Q 005459          138 I--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE  215 (696)
Q Consensus       138 ~--~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~  215 (696)
                      +  .+.+..|+.++.|.++.+  |..+.+...=.                                     ....+-.|.
T Consensus       273 v~W~p~~~~LLSASaDksmii--W~pd~~tGiWv-------------------------------------~~vRlGe~g  313 (764)
T KOG1063|consen  273 VWWHPEGLDLLSASADKSMII--WKPDENTGIWV-------------------------------------DVVRLGEVG  313 (764)
T ss_pred             EEEccchhhheecccCcceEE--EecCCccceEE-------------------------------------EEEEeeccc
Confidence            6  455567999999999876  54433211000                                     000011111


Q ss_pred             EccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee------cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC
Q 005459          216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES  288 (696)
Q Consensus       216 ~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~  288 (696)
                      .+...=..+.++|++..+++.+..|..++|-..+...|      .||.+.|. ++|+|.|.+|.+.+.|.|-|||---..
T Consensus       314 g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~  393 (764)
T KOG1063|consen  314 GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR  393 (764)
T ss_pred             ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc
Confidence            12211123457788888888888888888874332222      68999999 999999999999999999999875421


Q ss_pred             CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC----------C-------------------
Q 005459          289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG----------C-------------------  339 (696)
Q Consensus       289 ~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~----------~-------------------  339 (696)
                      ....+.+...+     -|.-..+|++|-+....+++|.+.+-+|+++...          +                   
T Consensus       394 q~~wHEiaRPQ-----iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLG  468 (764)
T KOG1063|consen  394 QQEWHEIARPQ-----IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALG  468 (764)
T ss_pred             ccceeeecccc-----cccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccc
Confidence            22234443322     2777899999998667888999989999997510          0                   


Q ss_pred             ---------------e---eE-----------------------------EEeecccccceecccccCCCCCCccceecc
Q 005459          340 ---------------R---LM-----------------------------STIRQISLSSISSPIVKPNQDCKYEPLMSG  372 (696)
Q Consensus       340 ---------------~---~~-----------------------------~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg  372 (696)
                                     .   +.                             +.|-|| ...|.+++.+|++    +.++|+
T Consensus       469 LSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH-GyEv~~l~~s~~g----nliASa  543 (764)
T KOG1063|consen  469 LSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH-GYEVYALAISPTG----NLIASA  543 (764)
T ss_pred             ccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC-ceeEEEEEecCCC----CEEeeh
Confidence                           0   00                             011233 2347788888887    777777


Q ss_pred             e--------eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEE
Q 005459          373 T--------SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH  441 (696)
Q Consensus       373 ~--------~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~  441 (696)
                      .        .+++|+..+-.....+.+|.-.|  +.|++ ++.+++.|.|.+..+|....+..-          ...   
T Consensus       544 CKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~----------e~~---  610 (764)
T KOG1063|consen  544 CKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD----------EFR---  610 (764)
T ss_pred             hhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccch----------hhh---
Confidence            5        67889988776667788999999  55555 999999999999999987433220          000   


Q ss_pred             eecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCC-ccceeeeEEEeEeeeC------cEEEEEE
Q 005459          442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLWLG------KIIVVCN  513 (696)
Q Consensus       442 ~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~-~~~e~~~~v~~~~w~~------~~lv~~~  513 (696)
                         -.....|.--|..+.|+||++++|+|++|.++ +|.....+=+.... ....-.-.|+.+.|.+      ..+|+.+
T Consensus       611 ---fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavG  687 (764)
T KOG1063|consen  611 ---FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVG  687 (764)
T ss_pred             ---hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEE
Confidence               01245788889999999999999999999999 99988774222211 1111223366666641      1233332


Q ss_pred             eecCCCeEEEEEeeCC
Q 005459          514 YIDSSNTYELLFYPRY  529 (696)
Q Consensus       514 ~~~~~~~~~lr~y~~~  529 (696)
                          -..++|-+|.+.
T Consensus       688 ----le~GeI~l~~~~  699 (764)
T KOG1063|consen  688 ----LEKGEIVLWRRK  699 (764)
T ss_pred             ----ecccEEEEEecc
Confidence                344788888854

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=3.2e-20  Score=171.45  Aligned_cols=234  Identities=15%  Similarity=0.187  Sum_probs=194.1

Q ss_pred             CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeE
Q 005459          205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVV  280 (696)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v  280 (696)
                      ..++.+|..+.          +.-||++.+++++|+++++|+...+..+   .+|...+. ++.+.|...+|+|+.|..|
T Consensus        14 ~~~qgaV~avr----------yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v   83 (307)
T KOG0316|consen   14 DCAQGAVRAVR----------YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV   83 (307)
T ss_pred             cccccceEEEE----------EccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceE
Confidence            34556666654          6779999999999999999998877554   78988888 9999999999999999999


Q ss_pred             EEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC--eeEEEeecccccceecccc
Q 005459          281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIV  358 (696)
Q Consensus       281 ~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~--~~~~~l~~~~~~~v~~~~~  358 (696)
                      .+||+++ ++..+.+.+        |.+.|+.++|+-+...+++|+.|.++++||-...  ++++.|... .+.|.++..
T Consensus        84 ~vwDV~T-Gkv~Rr~rg--------H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea-~D~V~Si~v  153 (307)
T KOG0316|consen   84 QVWDVNT-GKVDRRFRG--------HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA-KDGVSSIDV  153 (307)
T ss_pred             EEEEccc-Ceeeeeccc--------ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh-cCceeEEEe
Confidence            9999999 899999999        9999999999999999999999999999998654  456667665 566777765


Q ss_pred             cCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCC
Q 005459          359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT  434 (696)
Q Consensus       359 sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~  434 (696)
                      ..      ..++.|+   +++.++++.+++..-.-+|.-.-+.|+. ++..+.++.|+++++-|-.+|+           
T Consensus       154 ~~------heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGk-----------  216 (307)
T KOG0316|consen  154 AE------HEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGK-----------  216 (307)
T ss_pred             cc------cEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhH-----------
Confidence            33      4456666   9999999999988877777655577777 8899999999999987755555           


Q ss_pred             CcceeEEeecCeeeecCCCc--eEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          435 DELKILHLNLPVSYISQNWP--VQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       435 ~~~~w~~~~~~~~~~~~~~~--I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                               +...|++|...  =..++++..-..+++|++||.+ +||+....
T Consensus       217 ---------lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~  260 (307)
T KOG0316|consen  217 ---------LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET  260 (307)
T ss_pred             ---------HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence                     37889998653  2346788888999999999999 99997764

>PTZ00420 coronin; Provisional

Probab=99.85  E-value=4.3e-19  Score=194.63  Aligned_cols=240  Identities=14%  Similarity=0.131  Sum_probs=172.3

Q ss_pred             ccCCceeeeeeecc---eecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCCc-------eeeEEeeccCCCCCC
Q 005459          238 SKKGLKLAEFIKID---KELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESAS-------LIRTVSLYDWGYSMD  305 (696)
Q Consensus       238 ~d~~~~~~~~~~~~---~~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~~-------~~~~~~~~~~~~~~~  305 (696)
                      ..+.+++|+.....   .+.+|.+.|. ++|+|+ +++||+|+.||+|+|||+.+...       .+..+.+        
T Consensus        52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g--------  123 (568)
T PTZ00420         52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG--------  123 (568)
T ss_pred             ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec--------
Confidence            34567778754322   2368988887 999997 79999999999999999976322       2234555        


Q ss_pred             CCCCeEEEEECCCCCe-EEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCC
Q 005459          306 DTGPVSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY  381 (696)
Q Consensus       306 h~g~V~~l~~spdg~~-lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~  381 (696)
                      |.+.|.+++|+|++.. ||+|+.|++|++||+.+++...++. + ...|.+++|+|++    ..+++++   ++++||+.
T Consensus       124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~-~~~V~SlswspdG----~lLat~s~D~~IrIwD~R  197 (568)
T PTZ00420        124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-M-PKKLSSLKWNIKG----NLLSGTCVGKHMHIIDPR  197 (568)
T ss_pred             CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-c-CCcEEEEEECCCC----CEEEEEecCCEEEEEECC
Confidence            9999999999999875 5799999999999999988777775 3 3579999999998    7888765   89999999


Q ss_pred             CceEEEEecCCcceE-----EE--Eec-ceeeeeccCCC----CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee
Q 005459          382 GYRLYAIEEGSSERV-----LI--FSF-GKCCLNRGVSG----MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI  449 (696)
Q Consensus       382 ~~~l~~~~~~~~~~v-----~~--~~~-~~~~~s~~~d~----~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  449 (696)
                      +++++..+.+|.+.+     +.  |+. ++.+++++.|+    .+++||+.....-+..                 ....
T Consensus       198 sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~-----------------~~ld  260 (568)
T PTZ00420        198 KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT-----------------MSID  260 (568)
T ss_pred             CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE-----------------EEec
Confidence            999998888887643     21  223 56788877764    6999998754431100                 0112


Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEE
Q 005459          450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIV  510 (696)
Q Consensus       450 ~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv  510 (696)
                      .+.+++......++|.++++|+.|+.+ +|++..+....+.. .. ..-..+++++.++..+
T Consensus       261 ~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~-~~-s~~p~~g~~f~Pkr~~  320 (568)
T PTZ00420        261 NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNE-YK-SCSPFRSFGFLPKQIC  320 (568)
T ss_pred             CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecc-cc-cCCCccceEEcccccc
Confidence            233444444556779999999999999 99998875332221 11 1112457777765543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.84  E-value=2.5e-19  Score=168.18  Aligned_cols=256  Identities=13%  Similarity=0.194  Sum_probs=181.2

Q ss_pred             CceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhc-ccccEEEEcC-CCcEEEEEecCcEEEEEEEE
Q 005459           21 SQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSP-DTKLIAVVTSSLYLHIFKVQ   97 (696)
Q Consensus        21 ~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wsP-Dg~~lav~t~dg~l~l~~l~   97 (696)
                      ..+-|+++.||+.||++ .++++.+|++. +.    .+ +.......| +.+..++|.| ....+|+++.|..+++||+.
T Consensus        22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e-~~----r~-~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r   95 (313)
T KOG1407|consen   22 KVHSVAWNCDGTKLASGSFDKTVSVWNLE-RD----RF-RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR   95 (313)
T ss_pred             cceEEEEcccCceeeecccCCceEEEEec-ch----hh-hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence            44558999999999998 57899999996 32    11 111111223 4667889987 55689999999999999998


Q ss_pred             ecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCc
Q 005459           98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS  177 (696)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~  177 (696)
                      .++.-...             +        ..+ .....+.+|++++++++.+|..|..++-.  .....          
T Consensus        96 ~~k~~~~i-------------~--------~~~-eni~i~wsp~g~~~~~~~kdD~it~id~r--~~~~~----------  141 (313)
T KOG1407|consen   96 SGKCTARI-------------E--------TKG-ENINITWSPDGEYIAVGNKDDRITFIDAR--TYKIV----------  141 (313)
T ss_pred             cCcEEEEe-------------e--------ccC-cceEEEEcCCCCEEEEecCcccEEEEEec--cccee----------
Confidence            66532111             0        111 11234678899999999999888765422  11100          


Q ss_pred             ccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce---ec
Q 005459          178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---EL  254 (696)
Q Consensus       178 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~  254 (696)
                                               .-......+.++.          +..++.+++.+..-|++.+......+.   +.
T Consensus       142 -------------------------~~~~~~~e~ne~~----------w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~  186 (313)
T KOG1407|consen  142 -------------------------NEEQFKFEVNEIS----------WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK  186 (313)
T ss_pred             -------------------------ehhcccceeeeee----------ecCCCCEEEEecCCceEEEEeccccccccccc
Confidence                                     0001122244444          345666666666667777665443332   24


Q ss_pred             CCC-CeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEE
Q 005459          255 GSG-DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV  333 (696)
Q Consensus       255 ~~~-~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~v  333 (696)
                      .|. +.+|+.|+|+|+++|+|+.|..+.+||+++ .-+.+.+..        +.-||+.|+||.||++||+|++|.-|-|
T Consensus       187 AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isR--------ldwpVRTlSFS~dg~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  187 AHPSNCICIEFDPDGRYFATGSADALVSLWDVDE-LICERCISR--------LDWPVRTLSFSHDGRMLASASEDHFIDI  257 (313)
T ss_pred             cCCcceEEEEECCCCceEeeccccceeeccChhH-hhhheeecc--------ccCceEEEEeccCcceeeccCccceEEe
Confidence            554 667899999999999999999999999998 788888988        7778999999999999999999999999


Q ss_pred             EEccCCeeEEEeecccccceecccccCCC
Q 005459          334 WSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       334 W~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      =++++|..+..++-  .++...++|+|..
T Consensus       258 A~vetGd~~~eI~~--~~~t~tVAWHPk~  284 (313)
T KOG1407|consen  258 AEVETGDRVWEIPC--EGPTFTVAWHPKR  284 (313)
T ss_pred             EecccCCeEEEeec--cCCceeEEecCCC
Confidence            99999988877764  3556777888874

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.84  E-value=1.7e-19  Score=199.30  Aligned_cols=306  Identities=16%  Similarity=0.133  Sum_probs=213.8

Q ss_pred             cccEEEEcCCCcEEEEEe--cCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--eeCCCe
Q 005459           69 ENLQAVWSPDTKLIAVVT--SSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKH  144 (696)
Q Consensus        69 ~~~~v~wsPDg~~lav~t--~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~  144 (696)
                      .+.++..+|||..+|+++  .||.++||+.+.-......          .+.. ..+.......+.++|.|+  ++|+.+
T Consensus        15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~----------~~~~-l~k~l~~m~~h~~sv~CVR~S~dG~~   83 (942)
T KOG0973|consen   15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEE----------KNEN-LPKHLCTMDDHDGSVNCVRFSPDGSY   83 (942)
T ss_pred             eEEEEEecCCceeEecCCccccccceeeccccccchhhh----------hhcc-cchhheeeccccCceeEEEECCCCCe
Confidence            467999999999999999  8999999998743211100          0000 011222245677888886  788999


Q ss_pred             EEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEE
Q 005459          145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF  224 (696)
Q Consensus       145 llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  224 (696)
                      +++|++|..|.+|..+.  ....                                   +.                    
T Consensus        84 lAsGSDD~~v~iW~~~~--~~~~-----------------------------------~~--------------------  106 (942)
T KOG0973|consen   84 LASGSDDRLVMIWERAE--IGSG-----------------------------------TV--------------------  106 (942)
T ss_pred             EeeccCcceEEEeeecc--cCCc-----------------------------------cc--------------------
Confidence            99999998887743332  1100                                   00                    


Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeecceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS  303 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~  303 (696)
                       |.+.|.       -..+.-|....  .+.+|..-|. +.|+|++.+||+++.|++|.+||..+ .+.++++.+      
T Consensus       107 -fgs~g~-------~~~vE~wk~~~--~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t-F~~~~vl~~------  169 (942)
T KOG0973|consen  107 -FGSTGG-------AKNVESWKVVS--ILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT-FELLKVLRG------  169 (942)
T ss_pred             -cccccc-------ccccceeeEEE--EEecCCCccceeccCCCccEEEEecccceEEEEcccc-ceeeeeeec------
Confidence             000010       01112233221  2357877777 99999999999999999999999998 688999999      


Q ss_pred             CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc-----cccceecccccCCCCCCccceecce-----
Q 005459          304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-----SLSSISSPIVKPNQDCKYEPLMSGT-----  373 (696)
Q Consensus       304 ~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~-----~~~~v~~~~~sp~~~~~~~~l~sg~-----  373 (696)
                        |.+.|..+.|.|-|++||+-+.|++|++|.+..-.+.+++.++     +...+.-+.|||||    +++++.-     
T Consensus       170 --H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG----~~las~nA~n~~  243 (942)
T KOG0973|consen  170 --HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG----HHLASPNAVNGG  243 (942)
T ss_pred             --ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc----CeecchhhccCC
Confidence              9999999999999999999999999999998876666666543     12346778899999    7777543     


Q ss_pred             --eeEEEcCCCceEEEEecCCcceE--EEEec------ce------------eeeeccCCCCceeeeeeecCCeEEEEec
Q 005459          374 --SMMQWDEYGYRLYAIEEGSSERV--LIFSF------GK------------CCLNRGVSGMTYARQVIYGEDRLLVVQS  431 (696)
Q Consensus       374 --~~~~W~~~~~~l~~~~~~~~~~v--~~~~~------~~------------~~~s~~~d~~~~~w~~~~~~~~~~~~~~  431 (696)
                        ++.+-.-++.+.-..+-||..++  +.|.|      .+            .+++|+.|+++.+|.......       
T Consensus       244 ~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP-------  316 (942)
T KOG0973|consen  244 KSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP-------  316 (942)
T ss_pred             cceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc-------
Confidence              44444444545445556787776  55655      22            577889999999998533221       


Q ss_pred             CCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       432 ~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                                  +.....-.+.+|..++|||||..|.+++.||++ +..++.+.
T Consensus       317 ------------l~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  317 ------------LFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             ------------hhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence                        001111235679999999999999999999999 88887643

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.84  E-value=1.4e-20  Score=186.89  Aligned_cols=263  Identities=15%  Similarity=0.183  Sum_probs=199.1

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecce-----ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL  297 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~  297 (696)
                      +.+.++...+++++.|..|++|+....+.     +.|..+.+. +.|.++++.+..++.|+.+++|+++. .+...++.+
T Consensus       181 v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~-~r~~~TLsG  259 (459)
T KOG0288|consen  181 VEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS-LRLRHTLSG  259 (459)
T ss_pred             eEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc-hhhhhhhcc
Confidence            44667777899999999999999764431     234445566 99999999999999999999999998 888999999


Q ss_pred             ccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---e
Q 005459          298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S  374 (696)
Q Consensus       298 ~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~  374 (696)
                              |++.|+++.|.-....+++|+.|.++++||+....|..++--.  +.+..+..+      ...++||-   +
T Consensus       260 --------HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~------~~~~~SgH~Dkk  323 (459)
T KOG0288|consen  260 --------HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCS------ISDVISGHFDKK  323 (459)
T ss_pred             --------cccceeeehhhccccceeeccccchhhhhhhhhhheecccccc--ccccceEec------ceeeeecccccc
Confidence                    9999999999998888999999999999999998877665432  122222222      24456665   8


Q ss_pred             eEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecC
Q 005459          375 MMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ  451 (696)
Q Consensus       375 ~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  451 (696)
                      +++||..+..+......+. .|  +.+++ +..+++++.|.++.+.|+...+-+..+..              +.-..+|
T Consensus       324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA--------------~g~k~as  388 (459)
T KOG0288|consen  324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA--------------EGFKCAS  388 (459)
T ss_pred             eEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec--------------ccccccc
Confidence            9999999998888776654 77  45556 88899999999999998776655422111              2223355


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEe
Q 005459          452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFY  526 (696)
Q Consensus       452 ~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y  526 (696)
                      +  ...+.|||||.|+|+||.||.+ +|++.++|...-......+. .+..+.|.  +..++++     +++...++|
T Consensus       389 D--wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~-aI~s~~W~~sG~~Llsa-----dk~~~v~lW  458 (459)
T KOG0288|consen  389 D--WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA-AITSLSWNPSGSGLLSA-----DKQKAVTLW  458 (459)
T ss_pred             c--cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCc-ceEEEEEcCCCchhhcc-----cCCcceEec
Confidence            5  5689999999999999999999 99999998764433333332 46788886  5677776     455666666

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.84  E-value=1.7e-19  Score=197.10  Aligned_cols=263  Identities=16%  Similarity=0.186  Sum_probs=209.6

Q ss_pred             EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeE-EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459          260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRT-VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       260 v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~-~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~  338 (696)
                      +|..|.  ...+++|+.|++|++|+..+ +..+.+ +.+        |.+.|+++++..-+..|++|+.|.++++||..+
T Consensus       212 ~~~q~~--~~~~~~~s~~~tl~~~~~~~-~~~i~~~l~G--------H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  212 LCLQLH--DGFFKSGSDDSTLHLWDLNN-GYLILTRLVG--------HFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST  280 (537)
T ss_pred             hhheee--cCeEEecCCCceeEEeeccc-ceEEEeeccC--------CCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence            445666  66799999999999999988 666666 888        999999999988788999999999999999999


Q ss_pred             CeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCc
Q 005459          339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMT  414 (696)
Q Consensus       339 ~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~  414 (696)
                      +.|.+++.+| .+.+.++...+      ..+++|+   ++++|+..++.++.++.+|...|.++.. ...+++|+.|+++
T Consensus       281 g~C~~~l~gh-~stv~~~~~~~------~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v  353 (537)
T KOG0274|consen  281 GECTHSLQGH-TSSVRCLTIDP------FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTV  353 (537)
T ss_pred             CcEEEEecCC-CceEEEEEccC------ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceE
Confidence            9999999998 77788876644      3456665   9999999999999999999999988877 8889999999999


Q ss_pred             eeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC-ceEecCCcc
Q 005459          415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK-KWRVFGDIT  492 (696)
Q Consensus       415 ~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg-~w~~f~~~~  492 (696)
                      ++|++.+++.                    ..++.+|+..|+++.+.+. .++.+|+.|+++ +||+.++ +....-  .
T Consensus       354 ~VW~~~~~~c--------------------l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl--~  410 (537)
T KOG0274|consen  354 KVWDPRTGKC--------------------LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL--Q  410 (537)
T ss_pred             EEEEhhhcee--------------------eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh--c
Confidence            9999986554                    7788899999999988776 899999999999 9999998 432211  1


Q ss_pred             ceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeec-C-CccEEEEccCCEEEEEEcCceEEEEEE
Q 005459          493 QEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSL-L-AKPIVMDVYEDYILVTYRPFDVHIFHV  570 (696)
Q Consensus       493 ~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~-~-~~~l~~~~~~~~llv~~~d~~~~l~~~  570 (696)
                      + ..-.|.++.-+++.|+.+.     -+.+|++|+......   ++...- + ..+-++......++.++.|+.+.+|++
T Consensus       411 ~-h~~~v~~l~~~~~~Lvs~~-----aD~~Ik~WD~~~~~~---~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl  481 (537)
T KOG0274|consen  411 G-HTSLVSSLLLRDNFLVSSS-----ADGTIKLWDAEEGEC---LRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDL  481 (537)
T ss_pred             C-CcccccccccccceeEecc-----ccccEEEeecccCce---eeeeccCCcccEEEeecCcceEEEEecCCeeEEEec
Confidence            1 2223467888888898873     335999998753222   233222 1 223444444577888899999999987


Q ss_pred             EE
Q 005459          571 KL  572 (696)
Q Consensus       571 ~~  572 (696)
                      ..
T Consensus       482 ~~  483 (537)
T KOG0274|consen  482 RS  483 (537)
T ss_pred             cc
Confidence            64

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.84  E-value=4.4e-18  Score=172.84  Aligned_cols=423  Identities=15%  Similarity=0.153  Sum_probs=250.4

Q ss_pred             ccccccceeeeCCCCCCCCCc--eEEEEEeCCc-EEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCC
Q 005459            2 YMAYGWPQVIPLEQGLCPSSQ--QIIYFKVNNG-LLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD   78 (696)
Q Consensus         2 y~~~g~p~~~~~~~~~~~~~~--~~v~fs~dg~-lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPD   78 (696)
                      .=.+-|||--.+.+- .++.+  ....|-|-+. ++++.+.+.++.|+.+ .+....... .-+. .+.-.+.+++|.|+
T Consensus       182 lSVWdWqk~~~~~~v-k~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~-~~~l~k~~~-~fek-~ekk~Vl~v~F~en  257 (626)
T KOG2106|consen  182 LSVWDWQKKAKLGPV-KTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLR-GGSLVKRQG-IFEK-REKKFVLCVTFLEN  257 (626)
T ss_pred             cchhhchhhhccCcc-eeccceEEEEEeccCCCcEEEEeCCceEEEEEcc-CCceEEEee-cccc-ccceEEEEEEEcCC
Confidence            345678886554432 12333  3356999865 7777799999999986 332211111 1011 11245789999999


Q ss_pred             CcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCC-CeEEEEecCCcEEEE
Q 005459           79 TKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSI  157 (696)
Q Consensus        79 g~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~-~~llv~t~~g~i~~~  157 (696)
                      |. ++++.++|.|.||+..+...                     ...  ...+++.|.++..-+ ..|+.|.+|..|.. 
T Consensus       258 gd-viTgDS~G~i~Iw~~~~~~~---------------------~k~--~~aH~ggv~~L~~lr~GtllSGgKDRki~~-  312 (626)
T KOG2106|consen  258 GD-VITGDSGGNILIWSKGTNRI---------------------SKQ--VHAHDGGVFSLCMLRDGTLLSGGKDRKIIL-  312 (626)
T ss_pred             CC-EEeecCCceEEEEeCCCceE---------------------EeE--eeecCCceEEEEEecCccEeecCccceEEe-
Confidence            86 47889999999999843221                     111  125566776665544 45677888887755 


Q ss_pred             ecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEee
Q 005459          158 SWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV  237 (696)
Q Consensus       158 ~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~  237 (696)
                       |+..... .+....|.....+|.+.-.... +...... +..-.-.......+...-+-. ...-++..|+...+++++
T Consensus       313 -Wd~~y~k-~r~~elPe~~G~iRtv~e~~~d-i~vGTtr-N~iL~Gt~~~~f~~~v~gh~d-elwgla~hps~~q~~T~g  387 (626)
T KOG2106|consen  313 -WDDNYRK-LRETELPEQFGPIRTVAEGKGD-ILVGTTR-NFILQGTLENGFTLTVQGHGD-ELWGLATHPSKNQLLTCG  387 (626)
T ss_pred             -ccccccc-cccccCchhcCCeeEEecCCCc-EEEeecc-ceEEEeeecCCceEEEEeccc-ceeeEEcCCChhheeecc
Confidence             7744332 2222345555555554432221 2111100 000000011122222222222 334466789999999999


Q ss_pred             ccCCceeeeeeeccee--cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEE
Q 005459          238 SKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW  315 (696)
Q Consensus       238 ~d~~~~~~~~~~~~~~--~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~  315 (696)
                      +|+.+++|+.... .|  .-...+.|++|+|.| .+|+|...|.-.|.|.++  ..+-+++.        ...++++|+|
T Consensus       388 qdk~v~lW~~~k~-~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~--~~lv~~~~--------d~~~ls~v~y  455 (626)
T KOG2106|consen  388 QDKHVRLWNDHKL-EWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTET--QDLVTIHT--------DNEQLSVVRY  455 (626)
T ss_pred             CcceEEEccCCce-eEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccc--ceeEEEEe--------cCCceEEEEE
Confidence            9999999994332 22  223456679999999 999999999999999876  33444555        4788999999


Q ss_pred             CCCCCeEEEEEcCCcEEEEEccC-CeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecC
Q 005459          316 TPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG  391 (696)
Q Consensus       316 spdg~~lasg~~Dg~v~vW~~~~-~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~  391 (696)
                      +|||.+||.|+.|+.|.++-+.. ++......-++-+.++.+.|++|+    +++.+-+   .++.|.+.........+.
T Consensus       456 sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds----~~~~~~S~d~eiLyW~~~~~~~~ts~kD  531 (626)
T KOG2106|consen  456 SPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS----QFLVSNSGDYEILYWKPSECKQITSVKD  531 (626)
T ss_pred             cCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC----ceEEeccCceEEEEEccccCcccceecc
Confidence            99999999999999999999853 444444443333789999999998    8887655   888996654433322111


Q ss_pred             CcceEEEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecC--------eeeecCCCceEEEEEc
Q 005459          392 SSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP--------VSYISQNWPVQHVAAS  461 (696)
Q Consensus       392 ~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~--------~~~~~~~~~I~~va~s  461 (696)
                       -.  |.-.-  -...+.++.|++..-- +.....+-++..+.|..  +.+..+.|        ..|.+|..-|.+++|.
T Consensus       532 -vk--W~t~~c~lGF~v~g~s~~t~i~a-~~rs~~~~~lA~gdd~g--~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl  605 (626)
T KOG2106|consen  532 -VK--WATYTCTLGFEVFGGSDGTDINA-VARSHCEKLLASGDDFG--KVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFL  605 (626)
T ss_pred             -ee--eeeeEEEEEEEEecccCCchHHH-hhhhhhhhhhhccccCc--eEEEEccccCCCcccceeeccccceeEEEEEe
Confidence             00  10000  0111222333332110 00001111111111111  11111122        2678999999999999


Q ss_pred             CCCCEEEEEeCCccE-EEEc
Q 005459          462 KDGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       462 ~dG~~la~ag~dG~i-~w~~  480 (696)
                      -+-+.+.+.|.|..+ .|++
T Consensus       606 ~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  606 CKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             eCCceEEecCCCceEEEEEe
Confidence            998888888899999 9875

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=8e-18  Score=176.97  Aligned_cols=422  Identities=13%  Similarity=0.140  Sum_probs=245.7

Q ss_pred             ccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeee-CCCeEE
Q 005459           68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHML  146 (696)
Q Consensus        68 G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~-~~~~ll  146 (696)
                      .+++++++|.+++.||++-++|+|.||++..+-..                +..+.     .+.+.+|.+++. .+.+|+
T Consensus        26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~----------------~~vi~-----g~~drsIE~L~W~e~~RLF   84 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL----------------EPVIH-----GPEDRSIESLAWAEGGRLF   84 (691)
T ss_pred             cceEEEEEeccCCceeeeccCCcEEEEccCCCcee----------------eEEEe-----cCCCCceeeEEEccCCeEE
Confidence            56789999999999999999999999999743210                00111     122334444433 478999


Q ss_pred             EEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEE
Q 005459          147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL  226 (696)
Q Consensus       147 v~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  226 (696)
                      ...-+|.|..  ||-....+.                                  .........|.+|+          .
T Consensus        85 S~g~sg~i~E--wDl~~lk~~----------------------------------~~~d~~gg~IWsia----------i  118 (691)
T KOG2048|consen   85 SSGLSGSITE--WDLHTLKQK----------------------------------YNIDSNGGAIWSIA----------I  118 (691)
T ss_pred             eecCCceEEE--EecccCcee----------------------------------EEecCCCcceeEEE----------e
Confidence            9999999876  554333211                                  11223455687776          4


Q ss_pred             EeCCcEEEEeeccCCceeeeeeecc----ee--cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459          227 YSNGQLMSCSVSKKGLKLAEFIKID----KE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW  300 (696)
Q Consensus       227 s~dG~~~~~~~~d~~~~~~~~~~~~----~~--~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~  300 (696)
                      .|.+..++.++.|+.+...+....+    ..  ..-....+++|+|++..||.||.||.|++||+.. +...+.....-.
T Consensus       119 ~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~-~~t~~~~~~~~d  197 (691)
T KOG2048|consen  119 NPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS-GQTLHIITMQLD  197 (691)
T ss_pred             CCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC-CceEEEeeeccc
Confidence            5555666666666643333322211    11  1123455699999999999999999999999988 444332211001


Q ss_pred             CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEE
Q 005459          301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQ  377 (696)
Q Consensus       301 ~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~  377 (696)
                      +.+....--|+++.|-.|+ .||+|..-|+|+.||...+.++.++.-| ...|.+++..+++    ..+.++.   ++..
T Consensus       198 ~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h-~adVl~Lav~~~~----d~vfsaGvd~~ii~  271 (691)
T KOG2048|consen  198 RLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCH-DADVLALAVADNE----DRVFSAGVDPKIIQ  271 (691)
T ss_pred             ccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhh-hcceeEEEEcCCC----CeEEEccCCCceEE
Confidence            1111123347888887675 6889988899999999999999988887 7779999998886    5555544   5555


Q ss_pred             EcCCCceE-EEEe---cCCcceEEEEec-ceeeeeccCCCCceeeeeeecC---Ce---------EEEEecCCCCccee-
Q 005459          378 WDEYGYRL-YAIE---EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGE---DR---------LLVVQSEDTDELKI-  439 (696)
Q Consensus       378 W~~~~~~l-~~~~---~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~---~~---------~~~~~~~~~~~~~w-  439 (696)
                      +...+..- |...   ..|...+-++.. ...+.+|+.|.++.+-....-.   .+         +........-...| 
T Consensus       272 ~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~  351 (691)
T KOG2048|consen  272 YSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWK  351 (691)
T ss_pred             EEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEec
Confidence            55444321 3322   245555544443 4578888888877654433210   00         00001111111223 


Q ss_pred             -------EEeec------C-----eeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCc-eE--ecCCccceeeeE
Q 005459          440 -------LHLNL------P-----VSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKK-WR--VFGDITQEQKIQ  498 (696)
Q Consensus       440 -------~~~~~------~-----~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~-w~--~f~~~~~e~~~~  498 (696)
                             .....      +     .-......-|.+.|+||||+++|.+.-..+-+|.++..- -|  ...+...+ ...
T Consensus       352 ~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~-~~~  430 (691)
T KOG2048|consen  352 AHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLA-LLD  430 (691)
T ss_pred             cccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhh-hcc
Confidence                   11111      0     011122345999999999999999987666677766521 11  11111111 111


Q ss_pred             EEeEee--eCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCC-------ccEEEEccCCEEEEEEcCceEEEEE
Q 005459          499 SKGLLW--LGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLA-------KPIVMDVYEDYILVTYRPFDVHIFH  569 (696)
Q Consensus       499 v~~~~w--~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~-------~~l~~~~~~~~llv~~~d~~~~l~~  569 (696)
                      +..+..  .++.++.+.    .+..++-.+..+   ....-+.+++.+       --+..+++|++++++++.+.|.+|+
T Consensus       431 a~~i~ftid~~k~~~~s----~~~~~le~~el~---~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~n  503 (691)
T KOG2048|consen  431 ASAISFTIDKNKLFLVS----KNIFSLEEFELE---TPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYN  503 (691)
T ss_pred             ceeeEEEecCceEEEEe----cccceeEEEEec---CcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEE
Confidence            223333  355555542    233455444432   100111111111       1256778999999999999999998


Q ss_pred             EE
Q 005459          570 VK  571 (696)
Q Consensus       570 ~~  571 (696)
                      ++
T Consensus       504 l~  505 (691)
T KOG2048|consen  504 LE  505 (691)
T ss_pred             cc
Confidence            86

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.7e-18  Score=167.45  Aligned_cols=278  Identities=15%  Similarity=0.173  Sum_probs=200.1

Q ss_pred             cccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEE
Q 005459           67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML  146 (696)
Q Consensus        67 ~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~ll  146 (696)
                      .+++.++.|++||..+++++.|..|+|||...+.....+..+          +.           ...+.++......++
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk----------ky-----------G~~~~~Fth~~~~~i   72 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK----------KY-----------GVDLACFTHHSNTVI   72 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc----------cc-----------cccEEEEecCCceEE
Confidence            578899999999999999999999999999865532211100          00           112335555556666


Q ss_pred             EEec--CCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEE
Q 005459          147 LGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF  224 (696)
Q Consensus       147 v~t~--~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  224 (696)
                      .++.  |.+|+.++.......+                                    ...+|+..|.+++         
T Consensus        73 ~sStk~d~tIryLsl~dNkylR------------------------------------YF~GH~~~V~sL~---------  107 (311)
T KOG1446|consen   73 HSSTKEDDTIRYLSLHDNKYLR------------------------------------YFPGHKKRVNSLS---------  107 (311)
T ss_pred             EccCCCCCceEEEEeecCceEE------------------------------------EcCCCCceEEEEE---------
Confidence            6665  5677776655443322                                    2345667788776         


Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCC-CceeeEEeeccCC
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWG  301 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~-~~~~~~~~~~~~~  301 (696)
                       .+|-+..+++++.|+++++||.+..++.  ......-.+||.|+|-++|+|.....|++||++.. ..+..++...+  
T Consensus       108 -~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~--  184 (311)
T KOG1446|consen  108 -VSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD--  184 (311)
T ss_pred             -ecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC--
Confidence             6777889999999999999999865442  22233345899999999999999999999999975 35555555421  


Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccc--eecccccCCCCCCccceecce---eeE
Q 005459          302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS--ISSPIVKPNQDCKYEPLMSGT---SMM  376 (696)
Q Consensus       302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~--v~~~~~sp~~~~~~~~l~sg~---~~~  376 (696)
                         +.....+.|.|||||++|..+...+.+.+-|.+.|...+++.++....  --+..|.|++    +.+++|.   ++.
T Consensus       185 ---~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds----~Fvl~gs~dg~i~  257 (311)
T KOG1446|consen  185 ---NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS----KFVLSGSDDGTIH  257 (311)
T ss_pred             ---CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC----cEEEEecCCCcEE
Confidence               245678999999999999999999999999999999999998762221  1355789999    9999887   899


Q ss_pred             EEcCCCceEEEEecC-CcceEEEEec-ceeeeeccCCCCceeeeee
Q 005459          377 QWDEYGYRLYAIEEG-SSERVLIFSF-GKCCLNRGVSGMTYARQVI  420 (696)
Q Consensus       377 ~W~~~~~~l~~~~~~-~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~  420 (696)
                      +|+.++++.+....+ +...+.++.| -+...-.+.+..+.+|...
T Consensus       258 vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~  303 (311)
T KOG1446|consen  258 VWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD  303 (311)
T ss_pred             EEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence            999999999888877 4555544444 3333334445566667643

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=3.4e-19  Score=180.82  Aligned_cols=277  Identities=16%  Similarity=0.219  Sum_probs=190.8

Q ss_pred             hhcccccEEEEcCCCcE-EEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCC
Q 005459           65 QREGENLQAVWSPDTKL-IAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNK  143 (696)
Q Consensus        65 ~~~G~~~~v~wsPDg~~-lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~  143 (696)
                      +++..+.+++|||...+ +|++ +.-.+.||+..+-.....+.                +    ++ +...--+|..||+
T Consensus        24 ke~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~~~k~~s----------------r----Fk-~~v~s~~fR~DG~   81 (487)
T KOG0310|consen   24 KEHNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRSVRKTFS----------------R----FK-DVVYSVDFRSDGR   81 (487)
T ss_pred             cccCcceeEecCCCCCCceEEe-cccEEEEEecchhhhhhhHH----------------h----hc-cceeEEEeecCCe
Confidence            46778899999997765 5554 45569999987543211110                1    11 1122336777898


Q ss_pred             eEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceE
Q 005459          144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL  223 (696)
Q Consensus       144 ~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  223 (696)
                      .+++|...|.+++++.+.  ...            +                      ..+..+..++....        
T Consensus        82 LlaaGD~sG~V~vfD~k~--r~i------------L----------------------R~~~ah~apv~~~~--------  117 (487)
T KOG0310|consen   82 LLAAGDESGHVKVFDMKS--RVI------------L----------------------RQLYAHQAPVHVTK--------  117 (487)
T ss_pred             EEEccCCcCcEEEecccc--HHH------------H----------------------HHHhhccCceeEEE--------
Confidence            888899999999986322  100            0                      02334555666655        


Q ss_pred             EEEEe-CCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459          224 FVLYS-NGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSL  297 (696)
Q Consensus       224 ~~~s~-dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~  297 (696)
                        |+| |++.++++++|+.++.||..+...   +.+|++.|. .+++|- ..++++|+-||+||+||++..+..+.++. 
T Consensus       118 --f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-  194 (487)
T KOG0310|consen  118 --FSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-  194 (487)
T ss_pred             --ecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-
Confidence              444 445566666777888999876543   378999998 899995 55899999999999999987434444443 


Q ss_pred             ccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc-CCeeEEEeecccccceecccccCCCCCCccceecceeeE
Q 005459          298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMM  376 (696)
Q Consensus       298 ~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~-~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~  376 (696)
                              |..||..+.|-|.|..+|+++. ..|+|||+. |+++++....| ...|+|+++..++              
T Consensus       195 --------hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H-~KtVTcL~l~s~~--------------  250 (487)
T KOG0310|consen  195 --------HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNH-NKTVTCLRLASDS--------------  250 (487)
T ss_pred             --------CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcc-cceEEEEEeecCC--------------
Confidence                    8899999999999999999998 799999998 66666666656 5667777665543              


Q ss_pred             EEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceE
Q 005459          377 QWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ  456 (696)
Q Consensus       377 ~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~  456 (696)
                                                ..++|++.|+.++++++..  -++            .+.       ..-.+||.
T Consensus       251 --------------------------~rLlS~sLD~~VKVfd~t~--~Kv------------v~s-------~~~~~pvL  283 (487)
T KOG0310|consen  251 --------------------------TRLLSGSLDRHVKVFDTTN--YKV------------VHS-------WKYPGPVL  283 (487)
T ss_pred             --------------------------ceEeecccccceEEEEccc--eEE------------EEe-------eeccccee
Confidence                                      2356667777777766221  110            000       12245899


Q ss_pred             EEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459          457 HVAASKDGMFLAVAGLHGLI-LYDIR  481 (696)
Q Consensus       457 ~va~s~dG~~la~ag~dG~i-~w~~~  481 (696)
                      ++++|||++.+++|..+|.+ +=...
T Consensus       284 siavs~dd~t~viGmsnGlv~~rr~~  309 (487)
T KOG0310|consen  284 SIAVSPDDQTVVIGMSNGLVSIRRRE  309 (487)
T ss_pred             eEEecCCCceEEEecccceeeeehhh
Confidence            99999999999999999999 44333

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=3.6e-19  Score=171.33  Aligned_cols=222  Identities=14%  Similarity=0.238  Sum_probs=179.7

Q ss_pred             EEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCc--EEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQ--ILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~--~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      +.-+|+++++++.|.+|+++|......+   ..|.+.+. +.|.+...  .|.+|+.||.|.+|++.. ..++.++++  
T Consensus        49 vAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~-W~~~~slK~--  125 (362)
T KOG0294|consen   49 LAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-WELLKSLKA--  125 (362)
T ss_pred             EEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC-eEEeeeecc--
Confidence            3357999999999999999998765443   56877776 99999876  899999999999999988 788999999  


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEE
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQ  377 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~  377 (696)
                            |++.|+.++..|.|+.-.+-+.|+.+++||+-.++....++-.  ...+.+.|+|.+    +.++-++  .+-+
T Consensus       126 ------H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--~~at~v~w~~~G----d~F~v~~~~~i~i  193 (362)
T KOG0294|consen  126 ------HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--NKATLVSWSPQG----DHFVVSGRNKIDI  193 (362)
T ss_pred             ------cccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC--CcceeeEEcCCC----CEEEEEeccEEEE
Confidence                  9999999999999999999999999999999877754433321  113448899988    6554333  7888


Q ss_pred             EcCCCceEEEEecCCcceEEEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCce
Q 005459          378 WDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV  455 (696)
Q Consensus       378 W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I  455 (696)
                      |..+...++...... .++.+..|  +..+++|..+..+.+||.....                    ++..+.+|...|
T Consensus       194 ~q~d~A~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~--------------------~~~~~~AH~~RV  252 (362)
T KOG0294|consen  194 YQLDNASVFREIENP-KRILCATFLDGSELLVGGDNEWISLKDTDSDT--------------------PLTEFLAHENRV  252 (362)
T ss_pred             EecccHhHhhhhhcc-ccceeeeecCCceEEEecCCceEEEeccCCCc--------------------cceeeecchhhe
Confidence            999888877766543 45555555  7789999999999998865432                    367889999999


Q ss_pred             EEEEE--cCCCCEEEEEeCCccE-EEEccCC
Q 005459          456 QHVAA--SKDGMFLAVAGLHGLI-LYDIRQK  483 (696)
Q Consensus       456 ~~va~--s~dG~~la~ag~dG~i-~w~~~sg  483 (696)
                      ..+++  .|++.||+++|.||.| +||+...
T Consensus       253 K~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  253 KDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            99884  5789999999999999 9998764

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.84  E-value=2.4e-19  Score=198.10  Aligned_cols=284  Identities=16%  Similarity=0.224  Sum_probs=199.8

Q ss_pred             ecCCCC-eEE-EEEcCCCcEEEEEe--cCCeEEEEEccCCC-----------ceeeEEeeccCCCCCCCCCCeEEEEECC
Q 005459          253 ELGSGD-AVC-ASIAPEQQILAVGT--RRGVVELYDLAESA-----------SLIRTVSLYDWGYSMDDTGPVSCIAWTP  317 (696)
Q Consensus       253 ~~~~~~-~v~-v~~sp~~~~la~g~--~dg~v~vw~~~~~~-----------~~~~~~~~~~~~~~~~h~g~V~~l~~sp  317 (696)
                      |.+|.+ .+. ++++|||..+|+|+  .||.+++|+.+.-.           +++-+..        .|.+.|+|+.|||
T Consensus         8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~--------~h~~sv~CVR~S~   79 (942)
T KOG0973|consen    8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMD--------DHDGSVNCVRFSP   79 (942)
T ss_pred             ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeec--------cccCceeEEEECC
Confidence            345553 344 99999999999999  89999999976421           1112222        3999999999999


Q ss_pred             CCCeEEEEEcCCcEEEEEccC------------------CeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459          318 DNSAFAVGWKSRGLTVWSVSG------------------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM  376 (696)
Q Consensus       318 dg~~lasg~~Dg~v~vW~~~~------------------~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~  376 (696)
                      ||++||+|++|+-|.+|.-..                  -++.+.|++| .+.|..+.++|++    .++++++   ++.
T Consensus        80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H-~~DV~Dv~Wsp~~----~~lvS~s~DnsVi  154 (942)
T KOG0973|consen   80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH-DSDVLDVNWSPDD----SLLVSVSLDNSVI  154 (942)
T ss_pred             CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecC-CCccceeccCCCc----cEEEEecccceEE
Confidence            999999999999999998752                  1367788888 7889999999998    9999988   999


Q ss_pred             EEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC
Q 005459          377 QWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW  453 (696)
Q Consensus       377 ~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  453 (696)
                      +|+..+++++.++.+|...|  +.++| +++++|-+.|+++++|....-.-.              +.+.-|..-..-.-
T Consensus       155 iwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~--------------k~It~pf~~~~~~T  220 (942)
T KOG0973|consen  155 IWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE--------------KSITKPFEESPLTT  220 (942)
T ss_pred             EEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceee--------------EeeccchhhCCCcc
Confidence            99999999999999999999  88888 999999999999999995432211              11111211111122


Q ss_pred             ceEEEEEcCCCCEEEEEeC----CccE-EEEccCCceEecCC-ccceeeeEEEeEeee-----------------CcEEE
Q 005459          454 PVQHVAASKDGMFLAVAGL----HGLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLWL-----------------GKIIV  510 (696)
Q Consensus       454 ~I~~va~s~dG~~la~ag~----dG~i-~w~~~sg~w~~f~~-~~~e~~~~v~~~~w~-----------------~~~lv  510 (696)
                      -++-+.|||||+|||++-.    --++ +.+.  +.|+.-.+ ..|+..  |..+.++                 ..+.|
T Consensus       221 ~f~RlSWSPDG~~las~nA~n~~~~~~~IieR--~tWk~~~~LvGH~~p--~evvrFnP~lfe~~~~ng~~~~~~~~y~i  296 (942)
T KOG0973|consen  221 FFLRLSWSPDGHHLASPNAVNGGKSTIAIIER--GTWKVDKDLVGHSAP--VEVVRFNPKLFERNNKNGTSTQPNCYYCI  296 (942)
T ss_pred             eeeecccCCCcCeecchhhccCCcceeEEEec--CCceeeeeeecCCCc--eEEEEeChHHhccccccCCccCCCcceEE
Confidence            4788999999999998643    2244 6655  56874221 123332  2223332                 12334


Q ss_pred             EEEeecCCCeEEEEEeeCCCCCccceeEEeecCC-cc--EEEEccCCEEEEEEcCceEEEEEEEE
Q 005459          511 VCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLA-KP--IVMDVYEDYILVTYRPFDVHIFHVKL  572 (696)
Q Consensus       511 ~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~-~~--l~~~~~~~~llv~~~d~~~~l~~~~~  572 (696)
                      +|+   .+.+..|-+|... +-. .++..+.+.. .+  +.-+++|-.|++.+.|+++.+++++-
T Consensus       297 ~Av---gSqDrSlSVW~T~-~~R-Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  297 AAV---GSQDRSLSVWNTA-LPR-PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             EEE---ecCCccEEEEecC-CCC-chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence            442   2567899999985 111 1222222222 22  35558899999999999999999863

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=3.3e-19  Score=180.97  Aligned_cols=276  Identities=14%  Similarity=0.146  Sum_probs=212.4

Q ss_pred             CCCCeEEEEEcCCCc-EEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEE
Q 005459          255 GSGDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV  333 (696)
Q Consensus       255 ~~~~~v~v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~v  333 (696)
                      .|.....++|||... -+|+.+ .-.+.+|+..+ .+..+++..        -...|.++.|-.||+.||+|.+.|.|+|
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~-~~~~k~~sr--------Fk~~v~s~~fR~DG~LlaaGD~sG~V~v   94 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVT-RSVRKTFSR--------FKDVVYSVDFRSDGRLLAAGDESGHVKV   94 (487)
T ss_pred             ccCcceeEecCCCCCCceEEec-ccEEEEEecch-hhhhhhHHh--------hccceeEEEeecCCeEEEccCCcCcEEE
Confidence            444444499999543 244444 35789999876 566666655        5667999999999999999999999999


Q ss_pred             EEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec----ceeee
Q 005459          334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCL  406 (696)
Q Consensus       334 W~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~~  406 (696)
                      +|..+...+..+.+| +.++....|+|.+.   ..+++|+   ..+.|++.+......+.+|.+.|-+.++    ...++
T Consensus        95 fD~k~r~iLR~~~ah-~apv~~~~f~~~d~---t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivv  170 (487)
T KOG0310|consen   95 FDMKSRVILRQLYAH-QAPVHVTKFSPQDN---TMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVV  170 (487)
T ss_pred             eccccHHHHHHHhhc-cCceeEEEecccCC---eEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEE
Confidence            997776677788888 88999999999872   5667776   8889999988876678899999965555    45689


Q ss_pred             eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceE
Q 005459          407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR  486 (696)
Q Consensus       407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~  486 (696)
                      ||++|+++++||......                    +..-..|.-||..+.+=|.|..+|+||....-+||+.+|.-.
T Consensus       171 tGsYDg~vrl~DtR~~~~--------------------~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql  230 (487)
T KOG0310|consen  171 TGSYDGKVRLWDTRSLTS--------------------RVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL  230 (487)
T ss_pred             ecCCCceEEEEEeccCCc--------------------eeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence            999999999999877654                    233457888999999999999999999776669999988765


Q ss_pred             ecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEc--cCCEEEEEEcC
Q 005459          487 VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDV--YEDYILVTYRP  562 (696)
Q Consensus       487 ~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~--~~~~llv~~~d  562 (696)
                      +..-..|..  +|++|+..  +.-|+++     +-+..+++|+..   +-.+.|....++|++.+..  +++.++++-.|
T Consensus       231 l~~~~~H~K--tVTcL~l~s~~~rLlS~-----sLD~~VKVfd~t---~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn  300 (487)
T KOG0310|consen  231 LTSMFNHNK--TVTCLRLASDSTRLLSG-----SLDRHVKVFDTT---NYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN  300 (487)
T ss_pred             hhhhhcccc--eEEEEEeecCCceEeec-----ccccceEEEEcc---ceEEEEeeecccceeeEEecCCCceEEEeccc
Confidence            543333433  36666554  5778877     556899999753   5568899999999988774  55677778888


Q ss_pred             ceEEEEEEEEec
Q 005459          563 FDVHIFHVKLFG  574 (696)
Q Consensus       563 ~~~~l~~~~~~~  574 (696)
                      +-+.+-+.+.+.
T Consensus       301 Glv~~rr~~~k~  312 (487)
T KOG0310|consen  301 GLVSIRRREVKK  312 (487)
T ss_pred             ceeeeehhhccc
Confidence            877776555443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.83  E-value=9.8e-20  Score=174.37  Aligned_cols=276  Identities=14%  Similarity=0.219  Sum_probs=197.3

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccC------C-----C------ceeeEEeeccCCCCCCCCCCeEEEEE
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE------S-----A------SLIRTVSLYDWGYSMDDTGPVSCIAW  315 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~------~-----~------~~~~~~~~~~~~~~~~h~g~V~~l~~  315 (696)
                      ..|..+.+ .+|||||.++|+|+.|..|++.|+..      .     +      ..++++..        |..+|+++.|
T Consensus       109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD--------H~devn~l~F  180 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD--------HVDEVNDLDF  180 (430)
T ss_pred             eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh--------ccCcccceee
Confidence            45777766 89999999999999999999999872      0     0      13445554        9999999999


Q ss_pred             CCCCCeEEEEEcCCcEEEEEccCC---eeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEe
Q 005459          316 TPDNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE  389 (696)
Q Consensus       316 spdg~~lasg~~Dg~v~vW~~~~~---~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~  389 (696)
                      .|-...|++|+.|++|+++|....   +-+..+.+  ...|.++.|+|.|    +.++.|.   +.+++|..+++++...
T Consensus       181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd--~~~vrsiSfHPsG----efllvgTdHp~~rlYdv~T~Qcfvsa  254 (430)
T KOG0640|consen  181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD--TEPVRSISFHPSG----EFLLVGTDHPTLRLYDVNTYQCFVSA  254 (430)
T ss_pred             cchhheEEeccCCCeEEEEecccHHHHHHHHHhhc--cceeeeEeecCCC----ceEEEecCCCceeEEeccceeEeeec
Confidence            999999999999999999998643   23344443  3569999999999    8888887   8999999999999876


Q ss_pred             c---CCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee-cCCC-ceEEEEEc
Q 005459          390 E---GSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-SQNW-PVQHVAAS  461 (696)
Q Consensus       390 ~---~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~-~I~~va~s  461 (696)
                      .   +|.+.|.++.+   ++.-++++.||.+++||-..+..                    ..++. +|.+ .|.++.|+
T Consensus       255 nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC--------------------v~t~~~AH~gsevcSa~Ft  314 (430)
T KOG0640|consen  255 NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC--------------------VRTIGNAHGGSEVCSAVFT  314 (430)
T ss_pred             CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH--------------------HHHHHhhcCCceeeeEEEc
Confidence            4   46777855544   88889999999999999665543                    34443 4543 69999999


Q ss_pred             CCCCEEEEEeCCccE-EEEccCCceE-ecCCcc--ceeeeEEEeEee--eCcEEEEEEeecCCCeEEEEEeeCCC---CC
Q 005459          462 KDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDIT--QEQKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPRYH---LD  532 (696)
Q Consensus       462 ~dG~~la~ag~dG~i-~w~~~sg~w~-~f~~~~--~e~~~~v~~~~w--~~~~lv~~~~~~~~~~~~lr~y~~~~---l~  532 (696)
                      .+|+|+.+.|.|.++ +|.+.++|-- .+....  ..+.+.. .-.+  ..++++.-  .  ..+.++.-|+..+   +.
T Consensus       315 kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rt-qAvFNhtEdyVl~p--D--Eas~slcsWdaRtadr~~  389 (430)
T KOG0640|consen  315 KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRT-QAVFNHTEDYVLFP--D--EASNSLCSWDARTADRVA  389 (430)
T ss_pred             cCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhh-hhhhcCccceEEcc--c--cccCceeeccccchhhhh
Confidence            999999999999999 9999999842 232211  1111111 1222  23455443  2  2334666666531   11


Q ss_pred             ccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEE
Q 005459          533 QSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHV  570 (696)
Q Consensus       533 ~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~  570 (696)
                      .-.+.|.-..  +-+.-+|.+--+++.+.|...+.|.=
T Consensus       390 l~slgHn~a~--R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  390 LLSLGHNGAV--RWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             hcccCCCCCc--eEEEeCCCCCceeeecccceeeeeee
Confidence            1123333322  23666778888888888999998853

>PTZ00420 coronin; Provisional

Probab=99.83  E-value=1.8e-18  Score=189.76  Aligned_cols=224  Identities=13%  Similarity=0.116  Sum_probs=147.4

Q ss_pred             EEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEcCCcEEEEEccCCe--------eEE
Q 005459          273 VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCR--------LMS  343 (696)
Q Consensus       273 ~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~Dg~v~vW~~~~~~--------~~~  343 (696)
                      .|+.+|.|++|+... ...+..+.+        |.++|.+++|+|+ ++.||+|+.|++|++|++..+.        .+.
T Consensus        49 gGG~~gvI~L~~~~r-~~~v~~L~g--------H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~  119 (568)
T PTZ00420         49 GGGLIGAIRLENQMR-KPPVIKLKG--------HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQC  119 (568)
T ss_pred             CCCceeEEEeeecCC-CceEEEEcC--------CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceE
Confidence            367789999999876 566777887        9999999999996 8999999999999999997532        112


Q ss_pred             EeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecce-eeeeccCCCCceeeeeeec
Q 005459          344 TIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGK-CCLNRGVSGMTYARQVIYG  422 (696)
Q Consensus       344 ~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~-~~~s~~~d~~~~~w~~~~~  422 (696)
                      .+.+| ...|.+++|+|+                                        +. .+++++.|+++++||+..+
T Consensus       120 ~L~gH-~~~V~sVaf~P~----------------------------------------g~~iLaSgS~DgtIrIWDl~tg  158 (568)
T PTZ00420        120 ILKGH-KKKISIIDWNPM----------------------------------------NYYIMCSSGFDSFVNIWDIENE  158 (568)
T ss_pred             EeecC-CCcEEEEEECCC----------------------------------------CCeEEEEEeCCCeEEEEECCCC
Confidence            22333 223333333332                                        22 3467888999999998766


Q ss_pred             CCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEE-
Q 005459          423 EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSK-  500 (696)
Q Consensus       423 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~-  500 (696)
                      ..                    ...+ .|...|.+++|+|||++||+++.|+.+ +||+.+++-.. .-..|+...... 
T Consensus       159 ~~--------------------~~~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~-tl~gH~g~~~s~~  216 (568)
T PTZ00420        159 KR--------------------AFQI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS-SFHIHDGGKNTKN  216 (568)
T ss_pred             cE--------------------EEEE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE-EEecccCCceeEE
Confidence            53                    1222 245679999999999999999999999 99999876321 111222211111 


Q ss_pred             ----eEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCC--ccEEE--Ec-cCCEEEEEEcCceEEEEEEE
Q 005459          501 ----GLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLA--KPIVM--DV-YEDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       501 ----~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~--~~l~~--~~-~~~~llv~~~d~~~~l~~~~  571 (696)
                          ++...++.++++++.. ..+.+|+||+..++..  .++...+..  .++..  ++ .+..++++..|+.+++|++.
T Consensus       217 v~~~~fs~d~~~IlTtG~d~-~~~R~VkLWDlr~~~~--pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~  293 (568)
T PTZ00420        217 IWIDGLGGDDNYILSTGFSK-NNMREMKLWDLKNTTS--ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS  293 (568)
T ss_pred             EEeeeEcCCCCEEEEEEcCC-CCccEEEEEECCCCCC--ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence                1112345677765432 3456899999864443  233333332  22222  22 35567778899999999985

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.83  E-value=2.5e-19  Score=181.38  Aligned_cols=230  Identities=18%  Similarity=0.221  Sum_probs=177.6

Q ss_pred             cCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee----cCCCCeEE--EEEcCCCcEEEEEecC
Q 005459          204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC--ASIAPEQQILAVGTRR  277 (696)
Q Consensus       204 ~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~--v~~sp~~~~la~g~~d  277 (696)
                      +...+.+|++.          -++|||+.+++++.-.++.+||+..+...    ......-|  +++|||.++..+++.|
T Consensus       461 cl~rdnyiRSc----------kL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsd  530 (705)
T KOG0639|consen  461 CLNRDNYIRSC----------KLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSD  530 (705)
T ss_pred             ccCcccceeee----------EecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccC
Confidence            33456677664          48999999999999999999999766432    12223445  8999999999999999


Q ss_pred             CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceeccc
Q 005459          278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI  357 (696)
Q Consensus       278 g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~  357 (696)
                      |.|+|||+.+ ...++.+++        |+..+.||..|+||+.|-+|+-|++||.||+..++.+..-. . .+.|.++.
T Consensus       531 GnI~vwDLhn-q~~VrqfqG--------htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F-~SQIfSLg  599 (705)
T KOG0639|consen  531 GNIAVWDLHN-QTLVRQFQG--------HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-F-SSQIFSLG  599 (705)
T ss_pred             CcEEEEEccc-ceeeecccC--------CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-h-hhhheecc
Confidence            9999999998 888999999        99999999999999999999999999999998776443221 1 35588888


Q ss_pred             ccCCCCCCccceecce-eeEEEcC--CCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEec
Q 005459          358 VKPNQDCKYEPLMSGT-SMMQWDE--YGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQS  431 (696)
Q Consensus       358 ~sp~~~~~~~~l~sg~-~~~~W~~--~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~  431 (696)
                      .+|.+    +-++-|- ...+|-.  .+.+-. .+.-|..-|+.+.|   ++..++.+.|+.+..|..-.|..-      
T Consensus       600 ~cP~~----dWlavGMens~vevlh~skp~ky-qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi------  668 (705)
T KOG0639|consen  600 YCPTG----DWLAVGMENSNVEVLHTSKPEKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI------  668 (705)
T ss_pred             cCCCc----cceeeecccCcEEEEecCCccce-eecccccEEEEEEecccCceeeecCchhhhhhccCccccce------
Confidence            88988    7666554 3344432  111111 12346677766666   999999999999999987777651      


Q ss_pred             CCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459          432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       432 ~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~  480 (696)
                                ++.     ..+.+|.++.+|.|.+||++|+.|..+ +|.+
T Consensus       669 ----------Fqs-----kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  669 ----------FQS-----KESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ----------eec-----cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence                      111     236689999999999999999999999 9976

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=1.8e-19  Score=188.02  Aligned_cols=222  Identities=18%  Similarity=0.219  Sum_probs=188.2

Q ss_pred             eCCcEEEEeeccCCceeeeeeecce---------ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC-ceeeEEe
Q 005459          228 SNGQLMSCSVSKKGLKLAEFIKIDK---------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVS  296 (696)
Q Consensus       228 ~dG~~~~~~~~d~~~~~~~~~~~~~---------~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~-~~~~~~~  296 (696)
                      |.|+++++++.|+.++.|+......         ...|.+.+. ++.-.+++.|++++.|-+|++|+..... .++.++.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            6788899999999999998753221         245888888 8888899999999999999999998632 5667777


Q ss_pred             eccCCCCCCCCCCeEEEEE-CCCCCeEEEEEcCCcEEEEEccCC--eeE--------EEee-cccccceecccccCCCCC
Q 005459          297 LYDWGYSMDDTGPVSCIAW-TPDNSAFAVGWKSRGLTVWSVSGC--RLM--------STIR-QISLSSISSPIVKPNQDC  364 (696)
Q Consensus       297 ~~~~~~~~~h~g~V~~l~~-spdg~~lasg~~Dg~v~vW~~~~~--~~~--------~~l~-~~~~~~v~~~~~sp~~~~  364 (696)
                      .        |+.-|.|+++ -++...+|+|+-|+.|.+||+..+  +++        +.+. |+ ..+|.+++..+.+  
T Consensus       115 ~--------H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~-k~siYSLA~N~t~--  183 (735)
T KOG0308|consen  115 T--------HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP-KDSIYSLAMNQTG--  183 (735)
T ss_pred             c--------ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC-ccceeeeecCCcc--
Confidence            7        9999999999 889999999999999999999876  232        3333 33 5678888888887  


Q ss_pred             Cccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcce
Q 005459          365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK  438 (696)
Q Consensus       365 ~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~  438 (696)
                        ..+++|+   .+++||+.+++-++.+.||.+.|  +.++. |..++|++.|+++++|++.+...              
T Consensus       184 --t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC--------------  247 (735)
T KOG0308|consen  184 --TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC--------------  247 (735)
T ss_pred             --eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccce--------------
Confidence              7888887   78899999999999999999988  44444 99999999999999999988776              


Q ss_pred             eEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459          439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       439 w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s  482 (696)
                            ..+|..|...|+++..+|+-+++.+||+||.+ .=|+.+
T Consensus       248 ------l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  248 ------LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             ------eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence                  67899999999999999999999999999999 878776

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=5.9e-19  Score=186.03  Aligned_cols=264  Identities=17%  Similarity=0.207  Sum_probs=202.7

Q ss_pred             EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee
Q 005459          262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL  341 (696)
Q Consensus       262 v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~  341 (696)
                      +.|+ ..+.+|+|. ...|.+|+..+ +........        +...|+++.|+++|.+||+|-.+|.|.|||....+.
T Consensus       183 ldWs-s~n~laVal-g~~vylW~~~s-~~v~~l~~~--------~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~  251 (484)
T KOG0305|consen  183 LDWS-SANVLAVAL-GQSVYLWSASS-GSVTELCSF--------GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK  251 (484)
T ss_pred             hhcc-cCCeEEEEe-cceEEEEecCC-CceEEeEec--------CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc
Confidence            7788 556788876 35899999887 554544444        578899999999999999999999999999999999


Q ss_pred             EEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEE-ecCCcceEEEE--ec-ceeeeeccCCCCc
Q 005459          342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI-EEGSSERVLIF--SF-GKCCLNRGVSGMT  414 (696)
Q Consensus       342 ~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~-~~~~~~~v~~~--~~-~~~~~s~~~d~~~  414 (696)
                      +.++.++|...|.++++..      ..+.+|+   .+..+|....+.... ..+|...|..+  +. ++.+++|+.|+.+
T Consensus       252 ~~~~~~~h~~rvg~laW~~------~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~  325 (484)
T KOG0305|consen  252 TRTLRGSHASRVGSLAWNS------SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVV  325 (484)
T ss_pred             cccccCCcCceeEEEeccC------ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccce
Confidence            9999995588899999973      4566776   788888877665554 77899999444  44 8999999999999


Q ss_pred             eeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCC-CCEEEEEeC--CccE-EEEccCCceEecCC
Q 005459          415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGL--HGLI-LYDIRQKKWRVFGD  490 (696)
Q Consensus       415 ~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~d-G~~la~ag~--dG~i-~w~~~sg~w~~f~~  490 (696)
                      .+||....+.                    +..+..|+..|.+++|+|- ...||+||.  |+.+ +||+.+|+--.  .
T Consensus       326 ~Iwd~~~~~p--------------------~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~--~  383 (484)
T KOG0305|consen  326 FIWDGLSPEP--------------------KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID--S  383 (484)
T ss_pred             EeccCCCccc--------------------cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec--c
Confidence            9999844443                    6688999999999999994 558899765  8899 99999885211  1


Q ss_pred             ccceeeeEEEeEeeeCcE--EEEEEeecCCCeEEEEEeeCC--CCCccceeEEeecCCccEEEEccCCEEEEEEcCceEE
Q 005459          491 ITQEQKIQSKGLLWLGKI--IVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVH  566 (696)
Q Consensus       491 ~~~e~~~~v~~~~w~~~~--lv~~~~~~~~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~  566 (696)
                        -.-.-+|..|.|.++.  ++++  .+ -.+.+|+||.--  ++......|+..+..  ++++|++..++++.+|.+++
T Consensus       384 --vdtgsQVcsL~Wsk~~kEi~st--hG-~s~n~i~lw~~ps~~~~~~l~gH~~RVl~--la~SPdg~~i~t~a~DETlr  456 (484)
T KOG0305|consen  384 --VDTGSQVCSLIWSKKYKELLST--HG-YSENQITLWKYPSMKLVAELLGHTSRVLY--LALSPDGETIVTGAADETLR  456 (484)
T ss_pred             --cccCCceeeEEEcCCCCEEEEe--cC-CCCCcEEEEeccccceeeeecCCcceeEE--EEECCCCCEEEEecccCcEE
Confidence              1112347789998665  6665  22 122488888764  333334556665554  67789999999999999999


Q ss_pred             EEEEE
Q 005459          567 IFHVK  571 (696)
Q Consensus       567 l~~~~  571 (696)
                      +|++=
T Consensus       457 fw~~f  461 (484)
T KOG0305|consen  457 FWNLF  461 (484)
T ss_pred             ecccc
Confidence            99863

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2.4e-18  Score=186.52  Aligned_cols=208  Identities=20%  Similarity=0.277  Sum_probs=156.8

Q ss_pred             hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeE
Q 005459           66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM  145 (696)
Q Consensus        66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~l  145 (696)
                      +.+..+.++|.|||+.|.++.+||.+++|+......       .|+               .+......|.+++....++
T Consensus        12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-------~P~---------------ti~~~g~~v~~ia~~s~~f   69 (933)
T KOG1274|consen   12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-------EPE---------------TIDISGELVSSIACYSNHF   69 (933)
T ss_pred             ccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-------CCc---------------hhhccCceeEEEeecccce
Confidence            445678999999999999999999999999754311       010               0111344678888888999


Q ss_pred             EEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEE
Q 005459          146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV  225 (696)
Q Consensus       146 lv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  225 (696)
                      ++++.+++|.++..+.......                                    +..-...+++          ++
T Consensus        70 ~~~s~~~tv~~y~fps~~~~~i------------------------------------L~Rftlp~r~----------~~  103 (933)
T KOG1274|consen   70 LTGSEQNTVLRYKFPSGEEDTI------------------------------------LARFTLPIRD----------LA  103 (933)
T ss_pred             EEeeccceEEEeeCCCCCccce------------------------------------eeeeeccceE----------EE
Confidence            9999999999987653221100                                    0001122444          44


Q ss_pred             EEeCCcEEEEeeccCCceeeeeeecc---eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKID---KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG  301 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~  301 (696)
                      ++-+|+.++.++.|..+++.+..+..   .+.+|...+. +.|+|++++||+.+-||+|++|++++ +.+.+++.+.+..
T Consensus       104 v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k~  182 (933)
T KOG1274|consen  104 VSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD-GILSKTLTGVDKD  182 (933)
T ss_pred             EecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc-chhhhhcccCCcc
Confidence            78899999999999999988776542   3478999887 99999999999999999999999998 7777777765443


Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeE
Q 005459          302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM  342 (696)
Q Consensus       302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~  342 (696)
                      ....-...+..++|+|+|..||.-..|+.|++++..+....
T Consensus       183 n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~  223 (933)
T KOG1274|consen  183 NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ  223 (933)
T ss_pred             ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence            33334667888999999888998889999999998776543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.82  E-value=1.7e-18  Score=172.93  Aligned_cols=229  Identities=13%  Similarity=0.151  Sum_probs=193.6

Q ss_pred             eCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459          228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS  303 (696)
Q Consensus       228 ~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~  303 (696)
                      +.....+++..|+++-+.|....+.+   .||...++ +.++|+...+++++.|-.|+||.+.. .+....+..      
T Consensus       229 ~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~~~~~------  301 (506)
T KOG0289|consen  229 PSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPTSSRP------  301 (506)
T ss_pred             CCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCcccccc------
Confidence            33467888899988888887765543   79999999 99999999999999999999999987 454455555      


Q ss_pred             CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc-cccceecccccCCCCCCccceecce---eeEEEc
Q 005459          304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD  379 (696)
Q Consensus       304 ~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~-~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~  379 (696)
                        |.++|+.+...|.|.+|.+++.|+++..-|...+.+++..... ..-.+++.+|+||+    -.+.+|.   .+++|+
T Consensus       302 --h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg----Lifgtgt~d~~vkiwd  375 (506)
T KOG0289|consen  302 --HEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG----LIFGTGTPDGVVKIWD  375 (506)
T ss_pred             --ccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc----eEEeccCCCceEEEEE
Confidence              9999999999999999999999999999999999887765542 23358999999999    8888887   899999


Q ss_pred             CCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceE
Q 005459          380 EYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ  456 (696)
Q Consensus       380 ~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~  456 (696)
                      .....-...+.+|...|..++|   |-.+++++.|+.+++||+.....                   ++.-....+.+|.
T Consensus       376 lks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-------------------~kt~~l~~~~~v~  436 (506)
T KOG0289|consen  376 LKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-------------------FKTIQLDEKKEVN  436 (506)
T ss_pred             cCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-------------------cceeeccccccce
Confidence            9998888889999999977777   77899999999999999987665                   2222223445899


Q ss_pred             EEEEcCCCCEEEEEeCCccE-EEEccCCceEec
Q 005459          457 HVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF  488 (696)
Q Consensus       457 ~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f  488 (696)
                      ++.|++.|+||+++|.|=.| +++-.++.|...
T Consensus       437 s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~  469 (506)
T KOG0289|consen  437 SLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEI  469 (506)
T ss_pred             eEEEcCCCCeEEeecceeEEEEEecccccceee
Confidence            99999999999999999999 999999999864

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.82  E-value=7.3e-20  Score=185.31  Aligned_cols=274  Identities=15%  Similarity=0.137  Sum_probs=205.9

Q ss_pred             ccccceeEEEee--e-CCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCc
Q 005459          128 FAEKGLSVSNIV--S-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHK  204 (696)
Q Consensus       128 ~~~~~~~v~~~~--~-~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~  204 (696)
                      +.++...|+++.  + .+..++.++-|+.|++|..-.+...             ++                      ..
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~-------------lr----------------------tf  254 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC-------------LR----------------------TF  254 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcce-------------eh----------------------hh
Confidence            456666777763  3 4567888888999988643321111             11                      23


Q ss_pred             CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-cCCC--CeEEEEEcCCC-cEEEEEecCCeE
Q 005459          205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-LGSG--DAVCASIAPEQ-QILAVGTRRGVV  280 (696)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-~~~~--~~v~v~~sp~~-~~la~g~~dg~v  280 (696)
                      .+|...|.++.          ++.+|+.+++++-|+.+++||.+++++. ..|.  -..|+.|+||+ +.+.+|+.|+.|
T Consensus       255 ~gH~k~Vrd~~----------~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki  324 (503)
T KOG0282|consen  255 KGHRKPVRDAS----------FNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKI  324 (503)
T ss_pred             hcchhhhhhhh----------ccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcE
Confidence            35566676654          7899999999999999999999999876 3333  34579999998 899999999999


Q ss_pred             EEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccC
Q 005459          281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP  360 (696)
Q Consensus       281 ~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp  360 (696)
                      +.||++. ++.+++...        |-++|..+.|-|+|+++++.++|+++++|+....-.+..+...+..+..++..+|
T Consensus       325 ~~wDiRs-~kvvqeYd~--------hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P  395 (503)
T KOG0282|consen  325 RQWDIRS-GKVVQEYDR--------HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP  395 (503)
T ss_pred             EEEeccc-hHHHHHHHh--------hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC
Confidence            9999998 787777777        9999999999999999999999999999999887776666555456678888899


Q ss_pred             CCCCCccceecce---eeEEEcCCC-c--eEEEEecCCcce---E-EEEec-ceeeeeccCCCCceeeeeeecCCeEEEE
Q 005459          361 NQDCKYEPLMSGT---SMMQWDEYG-Y--RLYAIEEGSSER---V-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVV  429 (696)
Q Consensus       361 ~~~~~~~~l~sg~---~~~~W~~~~-~--~l~~~~~~~~~~---v-~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~  429 (696)
                      ++    ..++.-+   .+.++.... +  .....++||...   + +.|++ ++.+++|+.||.+.+||..+..      
T Consensus       396 ~~----~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k------  465 (503)
T KOG0282|consen  396 NG----KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK------  465 (503)
T ss_pred             CC----CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh------
Confidence            87    4444322   333333211 0  011123344322   2 66777 9999999999999999965544      


Q ss_pred             ecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC-CEEEEEeCCccE-EEE
Q 005459          430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYD  479 (696)
Q Consensus       430 ~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG-~~la~ag~dG~i-~w~  479 (696)
                                    +...+.+|+.++..+.|.|-. ..||++|-||.| +|+
T Consensus       466 --------------l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  466 --------------LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             --------------hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence                          367788999999999999975 479999999999 996

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=1.7e-18  Score=166.72  Aligned_cols=240  Identities=12%  Similarity=0.226  Sum_probs=178.5

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC--eEEEEEcCCc
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRG  330 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~--~lasg~~Dg~  330 (696)
                      ..|..++. +|++  ++++|+|+.|-+|+|||+.. ...+..+-.        |+|.|+++.|.|+-.  .|.+|++||.
T Consensus        40 ~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k-~~qlg~ll~--------HagsitaL~F~~~~S~shLlS~sdDG~  108 (362)
T KOG0294|consen   40 SAHAGSITALAVS--GPYVASGSSDETIHIYDMRK-RKQLGILLS--------HAGSITALKFYPPLSKSHLLSGSDDGH  108 (362)
T ss_pred             cccccceeEEEec--ceeEeccCCCCcEEEEeccc-hhhhcceec--------cccceEEEEecCCcchhheeeecCCCc
Confidence            35777766 7775  88999999999999999987 566666666        999999999999876  9999999999


Q ss_pred             EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccC
Q 005459          331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGV  410 (696)
Q Consensus       331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~  410 (696)
                      |.+|++..-.++.+++.| ...|+.++.+|.+                                        |.+++.+.
T Consensus       109 i~iw~~~~W~~~~slK~H-~~~Vt~lsiHPS~----------------------------------------KLALsVg~  147 (362)
T KOG0294|consen  109 IIIWRVGSWELLKSLKAH-KGQVTDLSIHPSG----------------------------------------KLALSVGG  147 (362)
T ss_pred             EEEEEcCCeEEeeeeccc-ccccceeEecCCC----------------------------------------ceEEEEcC
Confidence            999999999999999988 5557777776664                                        44567788


Q ss_pred             CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceEecCC
Q 005459          411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGD  490 (696)
Q Consensus       411 d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~~f~~  490 (696)
                      |+.++.|++..|.....+                   -+.++.  ..+.|+|.|.++++.++++.-+|.+.+-  ++|..
T Consensus       148 D~~lr~WNLV~Gr~a~v~-------------------~L~~~a--t~v~w~~~Gd~F~v~~~~~i~i~q~d~A--~v~~~  204 (362)
T KOG0294|consen  148 DQVLRTWNLVRGRVAFVL-------------------NLKNKA--TLVSWSPQGDHFVVSGRNKIDIYQLDNA--SVFRE  204 (362)
T ss_pred             CceeeeehhhcCccceee-------------------ccCCcc--eeeEEcCCCCEEEEEeccEEEEEecccH--hHhhh
Confidence            899999998888763211                   012222  2389999999999999998779988764  45554


Q ss_pred             ccceeeeEEEeEee-eCcEEEEEEeecCCCeEEEEEeeCCC--CCccceeEEeecCCccEEEEccCCEEEEEEcCceEEE
Q 005459          491 ITQEQKIQSKGLLW-LGKIIVVCNYIDSSNTYELLFYPRYH--LDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHI  567 (696)
Q Consensus       491 ~~~e~~~~v~~~~w-~~~~lv~~~~~~~~~~~~lr~y~~~~--l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l  567 (696)
                      ...+  .....+.| ++..|+++     .++..+++|+.+.  --..+..|...+.+-....++++.+|++++.||.|++
T Consensus       205 i~~~--~r~l~~~~l~~~~L~vG-----~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~v  277 (362)
T KOG0294|consen  205 IENP--KRILCATFLDGSELLVG-----GDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKV  277 (362)
T ss_pred             hhcc--ccceeeeecCCceEEEe-----cCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEE
Confidence            3322  22445555 57788887     3447899999872  2234566776666622233455667888999999999


Q ss_pred             EEEEEecc
Q 005459          568 FHVKLFGE  575 (696)
Q Consensus       568 ~~~~~~~~  575 (696)
                      |+++++..
T Consensus       278 Wd~~~~~k  285 (362)
T KOG0294|consen  278 WDIDMETK  285 (362)
T ss_pred             EEcccccc
Confidence            99998643

>PTZ00421 coronin; Provisional

Probab=99.82  E-value=9.9e-19  Score=190.94  Aligned_cols=217  Identities=12%  Similarity=0.142  Sum_probs=162.0

Q ss_pred             CCCcccEEEEEEccCcceEEEEEe-CCcEEEEeeccCCceeeeeeecc----------eecCCCCeEE-EEEcCCC-cEE
Q 005459          205 FPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKID----------KELGSGDAVC-ASIAPEQ-QIL  271 (696)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~s~-dG~~~~~~~~d~~~~~~~~~~~~----------~~~~~~~~v~-v~~sp~~-~~l  271 (696)
                      .+|...|.++.          |+| |++.+++++.|+++++|+.....          .+.+|...+. ++|+|++ ++|
T Consensus        72 ~GH~~~V~~v~----------fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iL  141 (493)
T PTZ00421         72 LGQEGPIIDVA----------FNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVL  141 (493)
T ss_pred             eCCCCCEEEEE----------EcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEE
Confidence            45667787776          566 78899999999999999976431          2367888887 9999985 799


Q ss_pred             EEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeeccccc
Q 005459          272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS  351 (696)
Q Consensus       272 a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~  351 (696)
                      |+|+.|++|++||+.+ ++.+..+..        |.+.|.+++|+|||..|++|+.|++|++||+.+++.+.++.+|...
T Consensus       142 aSgs~DgtVrIWDl~t-g~~~~~l~~--------h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~  212 (493)
T PTZ00421        142 ASAGADMVVNVWDVER-GKAVEVIKC--------HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA  212 (493)
T ss_pred             EEEeCCCEEEEEECCC-CeEEEEEcC--------CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence            9999999999999998 677777877        9999999999999999999999999999999999989898887444


Q ss_pred             ceecccccCCCCCCccceecce-------eeEEEcCCCce-EEEEecCCc-ceE--EEEec-ceeeeecc-CCCCceeee
Q 005459          352 SISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYR-LYAIEEGSS-ERV--LIFSF-GKCCLNRG-VSGMTYARQ  418 (696)
Q Consensus       352 ~v~~~~~sp~~~~~~~~l~sg~-------~~~~W~~~~~~-l~~~~~~~~-~~v--~~~~~-~~~~~s~~-~d~~~~~w~  418 (696)
                      .+..+.|.|++    ..+++..       .+++||..... .+.....+. ..+  ..+++ ++.+++++ .|+.+++|+
T Consensus       213 ~~~~~~w~~~~----~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwd  288 (493)
T PTZ00421        213 KSQRCLWAKRK----DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFE  288 (493)
T ss_pred             cceEEEEcCCC----CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEE
Confidence            44566777775    4554322       68999997643 333332222 223  34455 66677666 599999999


Q ss_pred             eeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCC
Q 005459          419 VIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD  463 (696)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~d  463 (696)
                      +..+...                   ...-..++.|++.++|.|.
T Consensus       289 l~~~~~~-------------------~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        289 LMNERLT-------------------FCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             eeCCceE-------------------EEeeccCCCCCcceEeccc
Confidence            8765431                   0101134567888888884

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.82  E-value=2e-17  Score=174.12  Aligned_cols=451  Identities=14%  Similarity=0.175  Sum_probs=267.4

Q ss_pred             CcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCc---EEEEEecCcEEEEEEEEecCcccccCC
Q 005459           31 NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTK---LIAVVTSSLYLHIFKVQITEKSIQIGG  107 (696)
Q Consensus        31 g~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~---~lav~t~dg~l~l~~l~~~~~~~~~~~  107 (696)
                      +.++|.++...|.+||-.+. .......+      +.+++.++.|-|+++   .++++..||.|++|.+....- .    
T Consensus        25 ~~~vafGa~~~Iav~dp~k~-~i~t~l~G------H~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~-~----   92 (764)
T KOG1063|consen   25 GGLVAFGAGPAIAVADPEKI-LIVTTLDG------HVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL-I----   92 (764)
T ss_pred             cceEEecCCceEEEeCcccc-eeEEeccC------CccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe-E----
Confidence            34677778889999998533 22222222      346789999999999   899999999999999982110 0    


Q ss_pred             CCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCC
Q 005459          108 KQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPS  187 (696)
Q Consensus       108 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~  187 (696)
                            .+          ..+.++...+.|+......+.+...++.+..  |+.+...-.-          +..+-|   
T Consensus        93 ------~i----------~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~v--w~~~~~e~~~----------~~~~rf---  141 (764)
T KOG1063|consen   93 ------KI----------YTIQGHCKECVCVVARSSVMTCKAADGTVSV--WDKQQDEVFL----------LAVLRF---  141 (764)
T ss_pred             ------EE----------EeecCcceeEEEEEeeeeEEEeeccCceEEE--eecCCCceee----------ehheeh---
Confidence                  00          0112233344444433333333467888877  5432111000          000000   


Q ss_pred             CCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEe-CCcE-EEEeeccCCceeeeeeec-----ceecCCCCeE
Q 005459          188 NGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQL-MSCSVSKKGLKLAEFIKI-----DKELGSGDAV  260 (696)
Q Consensus       188 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~-dG~~-~~~~~~d~~~~~~~~~~~-----~~~~~~~~~v  260 (696)
                                        ..+ .+..        +++++.+ .+++ +++++.+..+.+......     ..+.||.+.+
T Consensus       142 ------------------~~k-~~ip--------LcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWI  194 (764)
T KOG1063|consen  142 ------------------EIK-EAIP--------LCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWI  194 (764)
T ss_pred             ------------------hhh-hHhh--------HHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhh
Confidence                              000 0000        0111222 2222 222223333333322211     1237999999


Q ss_pred             E-EEEcCCCc---EEEEEecCCeEEEEEccCCC---ceee--------------EEeeccC-----CCCCCCCCCeEEEE
Q 005459          261 C-ASIAPEQQ---ILAVGTRRGVVELYDLAESA---SLIR--------------TVSLYDW-----GYSMDDTGPVSCIA  314 (696)
Q Consensus       261 ~-v~~sp~~~---~la~g~~dg~v~vw~~~~~~---~~~~--------------~~~~~~~-----~~~~~h~g~V~~l~  314 (696)
                      . ++|+..+.   +||++++|..||+|.+.-.+   +..+              .+...++     ....+|...|.++.
T Consensus       195 rsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~  274 (764)
T KOG1063|consen  195 RSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW  274 (764)
T ss_pred             hhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE
Confidence            9 99988655   89999999999999986422   0000              0000011     12347999999999


Q ss_pred             ECCCCCeEEEEEcCCcEEEEEccCC--eeEE--Eeeccc--ccceecccccCCCCCCccceecce---eeEEEcCCCceE
Q 005459          315 WTPDNSAFAVGWKSRGLTVWSVSGC--RLMS--TIRQIS--LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL  385 (696)
Q Consensus       315 ~spdg~~lasg~~Dg~v~vW~~~~~--~~~~--~l~~~~--~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l  385 (696)
                      |+|++..|.+++.|+++.+|.....  --+.  .+.+-+  ...+....|+|++    ..+++-+   ....|.......
T Consensus       275 W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~----~~ii~~g~~Gg~hlWkt~d~~~  350 (764)
T KOG1063|consen  275 WHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS----NVIIAHGRTGGFHLWKTKDKTF  350 (764)
T ss_pred             EccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC----CEEEEecccCcEEEEeccCccc
Confidence            9999999999999999999988654  2222  222221  3347788889987    4444332   556676333222


Q ss_pred             ---EEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEE
Q 005459          386 ---YAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVA  459 (696)
Q Consensus       386 ---~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va  459 (696)
                         .....||.+.|  +.+++ ++.++|.+.|.|-+++.-- |.+            ..||.+.-|+   -|...+.|++
T Consensus       351 w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q------------~~wHEiaRPQ---iHGyDl~c~~  414 (764)
T KOG1063|consen  351 WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQ------------QEWHEIARPQ---IHGYDLTCLS  414 (764)
T ss_pred             eeeccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccc------------cceeeecccc---cccccceeee
Confidence               22346888888  66667 9999999999999886543 222            1276666565   3666788888


Q ss_pred             EcCCCCEEEEEeCCccE-EEEccC----------Cc--------------------eE-ecCCcc---------------
Q 005459          460 ASKDGMFLAVAGLHGLI-LYDIRQ----------KK--------------------WR-VFGDIT---------------  492 (696)
Q Consensus       460 ~s~dG~~la~ag~dG~i-~w~~~s----------g~--------------------w~-~f~~~~---------------  492 (696)
                      |-+....+++|.+.... +|+...          ++                    -| .|..+.               
T Consensus       415 ~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~  494 (764)
T KOG1063|consen  415 FVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLA  494 (764)
T ss_pred             hccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccc
Confidence            87754455555555555 777621          10                    00 110000               


Q ss_pred             ---------------------ce------eeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecC
Q 005459          493 ---------------------QE------QKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLL  543 (696)
Q Consensus       493 ---------------------~e------~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~  543 (696)
                                           .|      +.+.|..++-.  +++++++|.......-.|++|++.+....+.+..|.+.
T Consensus       495 ~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLT  574 (764)
T KOG1063|consen  495 AAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLT  574 (764)
T ss_pred             cCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceE
Confidence                                 00      12345555554  77888888876667779999999843332234334344


Q ss_pred             CccEEEEccCCEEEEEEcCceEEEEEEE
Q 005459          544 AKPIVMDVYEDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       544 ~~~l~~~~~~~~llv~~~d~~~~l~~~~  571 (696)
                      -.-|.++++|.+||.++-|...+||...
T Consensus       575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~  602 (764)
T KOG1063|consen  575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQ  602 (764)
T ss_pred             EEEEEECCCCcEEEEeecCceEEeeeee
Confidence            3449999999999999999999999874

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=2.8e-17  Score=150.94  Aligned_cols=288  Identities=14%  Similarity=0.179  Sum_probs=194.2

Q ss_pred             CCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC------CCCCCCCCeEEEEECCCCCeEEEEEcCC
Q 005459          257 GDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG------YSMDDTGPVSCIAWTPDNSAFAVGWKSR  329 (696)
Q Consensus       257 ~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~------~~~~h~g~V~~l~~spdg~~lasg~~Dg  329 (696)
                      ..++. ++|+|.|.+.|+|+...+.|+.....-..+.+.-.....|      -..-|+|.|.|.+|||+|+.||+|+.|+
T Consensus        32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk  111 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK  111 (350)
T ss_pred             hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence            56777 9999999999999999999987654311110000000111      0124899999999999999999999999


Q ss_pred             cEEEEEccC--CeeE---EEeecccccceecccccCCCCCCccceecce----eeEEEcCCCceEEEEecCCcceEEEE-
Q 005459          330 GLTVWSVSG--CRLM---STIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSERVLIF-  399 (696)
Q Consensus       330 ~v~vW~~~~--~~~~---~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~~~~~v~~~-  399 (696)
                      +|++--...  +...   ..+..| ...|..++|-.+.......++++.    .+.+=|-..++-+..+.+|.+.|+++ 
T Consensus       112 ~ik~l~fn~dt~~~~g~dle~nmh-dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly  190 (350)
T KOG0641|consen  112 TIKVLPFNADTCNATGHDLEFNMH-DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY  190 (350)
T ss_pred             eEEEEecccccccccCcceeeeec-CCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE
Confidence            999975532  2211   123334 667888888766555557777775    56666777888899999999999665 


Q ss_pred             ec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec---CCCceEEEEEcCCCCEEEEEeCCcc
Q 005459          400 SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS---QNWPVQHVAASKDGMFLAVAGLHGL  475 (696)
Q Consensus       400 ~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~---~~~~I~~va~s~dG~~la~ag~dG~  475 (696)
                      ++ +-.+++++.|.++++||+.-...--                .+-..+.+   ....|.+++++|.|+.||+|-.|..
T Consensus       191 swn~~m~~sgsqdktirfwdlrv~~~v~----------------~l~~~~~~~glessavaav~vdpsgrll~sg~~dss  254 (350)
T KOG0641|consen  191 SWNGAMFASGSQDKTIRFWDLRVNSCVN----------------TLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS  254 (350)
T ss_pred             EecCcEEEccCCCceEEEEeeeccceee----------------eccCcccCCCcccceeEEEEECCCcceeeeccCCCc
Confidence            45 7789999999999999986443200                00111221   1357999999999999999999999


Q ss_pred             E-EEEccCCceE-ecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC-CCCccc-eeEEeecCCccEEE
Q 005459          476 I-LYDIRQKKWR-VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY-HLDQSS-LLCRKSLLAKPIVM  549 (696)
Q Consensus       476 i-~w~~~sg~w~-~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~-~l~~~~-~~~~~~~~~~~l~~  549 (696)
                      . +||++.+|-. .|    +.+.-.++.+.+.  -+++++|.|.     -.||+-+.+ .|.... .+...+....++..
T Consensus       255 c~lydirg~r~iq~f----~phsadir~vrfsp~a~yllt~syd-----~~ikltdlqgdla~el~~~vv~ehkdk~i~~  325 (350)
T KOG0641|consen  255 CMLYDIRGGRMIQRF----HPHSADIRCVRFSPGAHYLLTCSYD-----MKIKLTDLQGDLAHELPIMVVAEHKDKAIQC  325 (350)
T ss_pred             eEEEEeeCCceeeee----CCCccceeEEEeCCCceEEEEeccc-----ceEEEeecccchhhcCceEEEEeccCceEEE
Confidence            9 9999998732 22    2222336666664  5788988553     578888876 454321 12222223333433


Q ss_pred             E--ccCCEEEEEEcCceEEEEEE
Q 005459          550 D--VYEDYILVTYRPFDVHIFHV  570 (696)
Q Consensus       550 ~--~~~~~llv~~~d~~~~l~~~  570 (696)
                      -  +.+-+++..++|.+..||.+
T Consensus       326 rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  326 RWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             EecCccceeeeccCcceEEEecc
Confidence            3  44555677888999999865

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.82  E-value=2.2e-18  Score=165.06  Aligned_cols=234  Identities=16%  Similarity=0.294  Sum_probs=175.3

Q ss_pred             CCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459          257 GDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW  334 (696)
Q Consensus       257 ~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW  334 (696)
                      ++.|. ++||| ...+++.|+.||+||+|++...+........       .|.++|.+++|+-||..+++|+.|+.+++|
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~-------~~~~PvL~v~WsddgskVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ-------SHDGPVLDVCWSDDGSKVFSGGCDKQAKLW   99 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhh-------ccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence            56676 99999 6778889999999999999874444432221       399999999999999999999999999999


Q ss_pred             EccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccC
Q 005459          335 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGV  410 (696)
Q Consensus       335 ~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~  410 (696)
                      |+.+++ ...+..| ...|..+.|-+..  +++.+++|+   +++.||.+....+.+..- .+++++.+. -..++.+..
T Consensus       100 DL~S~Q-~~~v~~H-d~pvkt~~wv~~~--~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~~pm~vVata  174 (347)
T KOG0647|consen  100 DLASGQ-VSQVAAH-DAPVKTCHWVPGM--NYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVLYPMAVVATA  174 (347)
T ss_pred             EccCCC-eeeeeec-ccceeEEEEecCC--CcceeEecccccceeecccCCCCeeeeeec-cceeeehhccCceeEEEec
Confidence            999995 5566666 7789998886654  357899999   999999998888877754 568888777 444555666


Q ss_pred             CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec----CCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC--
Q 005459          411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS----QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK--  483 (696)
Q Consensus       411 d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~----~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg--  483 (696)
                      +..+.++++..+..                      .+..    -++.+||++.-+|....|.|+-.|.+ +..+..+  
T Consensus       175 ~r~i~vynL~n~~t----------------------e~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~  232 (347)
T KOG0647|consen  175 ERHIAVYNLENPPT----------------------EFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP  232 (347)
T ss_pred             CCcEEEEEcCCCcc----------------------hhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence            77777776644322                      2222    35679999999999999999999999 8888775  


Q ss_pred             c----eEecCCccce--eeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459          484 K----WRVFGDITQE--QKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       484 ~----w~~f~~~~~e--~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      +    .|...+...-  .-+.|..++++  ...++++     +.++.+.||+.+
T Consensus       233 ~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTa-----GsDGtf~FWDkd  281 (347)
T KOG0647|consen  233 KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTA-----GSDGTFSFWDKD  281 (347)
T ss_pred             cCceeEEEeccCCCCCCceEEecceEeecccceEEEe-----cCCceEEEecch
Confidence            1    2332222111  12457788887  4566666     455889999986

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.81  E-value=3.3e-18  Score=172.47  Aligned_cols=266  Identities=15%  Similarity=0.203  Sum_probs=195.9

Q ss_pred             ceEEEEEeCCcEEEEeeccCCceeeeeeeccee---------------------cCCCC-eEEEEEcCCCcEEEEEecCC
Q 005459          221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---------------------LGSGD-AVCASIAPEQQILAVGTRRG  278 (696)
Q Consensus       221 ~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---------------------~~~~~-~v~v~~sp~~~~la~g~~dg  278 (696)
                      ...+++++|+++.++++.++++.-|+..+++..                     .+|.+ .+++++|+||++||+|+.|.
T Consensus       145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~  224 (479)
T KOG0299|consen  145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR  224 (479)
T ss_pred             ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence            344668999999999999999888886654311                     14544 45599999999999999999


Q ss_pred             eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccc
Q 005459          279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV  358 (696)
Q Consensus       279 ~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~  358 (696)
                      .|.||+.++ .++++.+++        |.++|.+++|--.-..|.+++.|++|++|++.....+.++-+| .+.|.++..
T Consensus       225 ~v~Iw~~~t-~ehv~~~~g--------hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH-qd~v~~Ida  294 (479)
T KOG0299|consen  225 HVQIWDCDT-LEHVKVFKG--------HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH-QDGVLGIDA  294 (479)
T ss_pred             eEEEecCcc-cchhhcccc--------cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC-ccceeeech
Confidence            999999998 899999999        9999999999988889999999999999999988888899898 666777654


Q ss_pred             cCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec--ceeeeeccCCCCceeeeeeecCCeEEEEe-cC
Q 005459          359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQ-SE  432 (696)
Q Consensus       359 sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~-~~  432 (696)
                      ..-+    ..+..|.   ++++|.+. .+.-.++.++...+-+..|  ...++||+.+|++.+|.+..... ++.+. .+
T Consensus       295 L~re----R~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp-lf~~~~AH  368 (479)
T KOG0299|consen  295 LSRE----RCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKP-LFTSRLAH  368 (479)
T ss_pred             hccc----ceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCc-eeEeeccc
Confidence            4432    3333332   99999983 3333344566667756666  77899999999999999876554 22221 11


Q ss_pred             CCCcceeEEeecCe-eeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeE--EEeEeee--C
Q 005459          433 DTDELKILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ--SKGLLWL--G  506 (696)
Q Consensus       433 ~~~~~~w~~~~~~~-~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~--v~~~~w~--~  506 (696)
                      ..         .|. .-..++..|.+++..|....+|+|+.+|.+ +|-+..+--. + +...+-.+.  |..++|.  +
T Consensus       369 gv---------~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~-i-~~l~~ls~~GfVNsl~f~~sg  437 (479)
T KOG0299|consen  369 GV---------IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA-I-NLLYSLSLVGFVNSLAFSNSG  437 (479)
T ss_pred             cc---------cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc-c-ceeeecccccEEEEEEEccCC
Confidence            00         011 112344579999999999999999999999 9999988311 1 111222222  5578875  6


Q ss_pred             cEEEEEE
Q 005459          507 KIIVVCN  513 (696)
Q Consensus       507 ~~lv~~~  513 (696)
                      +.+++++
T Consensus       438 k~ivagi  444 (479)
T KOG0299|consen  438 KRIVAGI  444 (479)
T ss_pred             CEEEEec
Confidence            6677773

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.81  E-value=6.5e-17  Score=173.57  Aligned_cols=383  Identities=14%  Similarity=0.102  Sum_probs=232.8

Q ss_pred             EEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCc-EEEEEecCcEEEEEEEEecCcccccCCCCC
Q 005459           33 LLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTK-LIAVVTSSLYLHIFKVQITEKSIQIGGKQP  110 (696)
Q Consensus        33 lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~-~lav~t~dg~l~l~~l~~~~~~~~~~~~~~  110 (696)
                      -+|++ .+++|.|.+.. -...|..++..      .|.++++.|+-||+ .+|++++.|++-+||++..+......    
T Consensus       216 VVaiG~~~G~ViifNlK-~dkil~sFk~d------~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~----  284 (910)
T KOG1539|consen  216 VVAIGLENGTVIIFNLK-FDKILMSFKQD------WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR----  284 (910)
T ss_pred             EEEEeccCceEEEEEcc-cCcEEEEEEcc------ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee----
Confidence            45555 57899999995 65666666432      38899999999998 57778888999999998544211100    


Q ss_pred             CCceeeeeeEEEeeeccccccceeEEEe-eeCC-CeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCC
Q 005459          111 SGLFFIKISLVLNEQLPFAEKGLSVSNI-VSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN  188 (696)
Q Consensus       111 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~-~~~~-~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~  188 (696)
                                        ..+.+++... ...+ .-++.+..|..++.|-.|.......-+.....++.+..-+.|...+
T Consensus       285 ------------------nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~  346 (910)
T KOG1539|consen  285 ------------------NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ  346 (910)
T ss_pred             ------------------ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC
Confidence                              1111111111 1112 2344455566666655552222111111111111111112221111


Q ss_pred             C--cccccCCCccc-----------------------cC----CcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeecc
Q 005459          189 G--LASVDTSGAFV-----------------------SD----HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK  239 (696)
Q Consensus       189 ~--l~~~~~~~~~~-----------------------~~----~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d  239 (696)
                      .  +.+...+..++                       +.    ...-+.-.|..+++...-     -....+++.+..++
T Consensus       347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R-----E~~W~Nv~~~h~~~  421 (910)
T KOG1539|consen  347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR-----EKEWDNVITAHKGK  421 (910)
T ss_pred             cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccch-----hhhhcceeEEecCc
Confidence            0  00000000000                       00    000111223333222110     00112344444455


Q ss_pred             CCceeeeeeecce---ec-------CCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCC
Q 005459          240 KGLKLAEFIKIDK---EL-------GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP  309 (696)
Q Consensus       240 ~~~~~~~~~~~~~---~~-------~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~  309 (696)
                      .....|+......   ..       ....+.++++++-|++...|+..|+|.+|++.. +-....+     +.++.|.++
T Consensus       422 ~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS-Gi~r~sf-----~~~~ah~~~  495 (910)
T KOG1539|consen  422 RSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS-GIHRKSF-----GDSPAHKGE  495 (910)
T ss_pred             ceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc-Ceeeccc-----ccCccccCc
Confidence            5566677543211   11       113445599999999999999999999999987 4433333     234459999


Q ss_pred             eEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEE
Q 005459          310 VSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLY  386 (696)
Q Consensus       310 V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~  386 (696)
                      |+.++...-++.+++++.||-++.||..++.+..+++-.  .++..+..+...    ..++.+.   .+++.|..+.+..
T Consensus       496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~--~~~~~iv~hr~s----~l~a~~~ddf~I~vvD~~t~kvv  569 (910)
T KOG1539|consen  496 VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG--SSITGIVYHRVS----DLLAIALDDFSIRVVDVVTRKVV  569 (910)
T ss_pred             eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC--CCcceeeeeehh----hhhhhhcCceeEEEEEchhhhhh
Confidence            999999999999999999999999999998888777643  235555555544    4444433   8889999999999


Q ss_pred             EEecCCcceEEEEe--c-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCC
Q 005459          387 AIEEGSSERVLIFS--F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD  463 (696)
Q Consensus       387 ~~~~~~~~~v~~~~--~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~d  463 (696)
                      ..+.||.++|..+.  + ++.+++++.|+++++||+.++..                    .. -..-..|..++.|||+
T Consensus       570 R~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~l--------------------ID-~~~vd~~~~sls~SPn  628 (910)
T KOG1539|consen  570 REFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTL--------------------ID-GLLVDSPCTSLSFSPN  628 (910)
T ss_pred             HHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcce--------------------ee-eEecCCcceeeEECCC
Confidence            99999999995554  4 99999999999999999887764                    11 1123457899999999


Q ss_pred             CCEEEEEeCCccE--EEEccC
Q 005459          464 GMFLAVAGLHGLI--LYDIRQ  482 (696)
Q Consensus       464 G~~la~ag~dG~i--~w~~~s  482 (696)
                      |.+||++..|+.-  +|.-.+
T Consensus       629 gD~LAT~Hvd~~gIylWsNks  649 (910)
T KOG1539|consen  629 GDFLATVHVDQNGIYLWSNKS  649 (910)
T ss_pred             CCEEEEEEecCceEEEEEchh
Confidence            9999999998544  776444

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.79  E-value=1.9e-15  Score=153.94  Aligned_cols=345  Identities=15%  Similarity=0.130  Sum_probs=232.7

Q ss_pred             ceEEEEEeC--CcEEEEEcc---CeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEE
Q 005459           22 QQIIYFKVN--NGLLLIASP---CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV   96 (696)
Q Consensus        22 ~~~v~fs~d--g~lla~~~~---~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l   96 (696)
                      .--|+||+-  |.+|++..+   .-+.+||- |-...++..+.+.      ..+..+.|.|-+..|.+....|++.+|++
T Consensus       157 V~~vaFsk~~~G~~l~~vD~s~~h~lSVWdW-qk~~~~~~vk~sn------e~v~~a~FHPtd~nliit~Gk~H~~Fw~~  229 (626)
T KOG2106|consen  157 VTCVAFSKINGGSLLCAVDDSNPHMLSVWDW-QKKAKLGPVKTSN------EVVFLATFHPTDPNLIITCGKGHLYFWTL  229 (626)
T ss_pred             ceeeeecccCCCceEEEecCCCccccchhhc-hhhhccCcceecc------ceEEEEEeccCCCcEEEEeCCceEEEEEc
Confidence            445789887  568887743   35899998 4555555444332      23467999999988888888999999998


Q ss_pred             EecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeC-CCeEEEEecCCcEEEEecCCccccceeeccCCCC
Q 005459           97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSND  175 (696)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~-~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~  175 (696)
                      +.+......                   .+.-+.....|.|+... ++.++.|-++|.|.+|+-.  ......       
T Consensus       230 ~~~~l~k~~-------------------~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~--~~~~~k-------  281 (626)
T KOG2106|consen  230 RGGSLVKRQ-------------------GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKG--TNRISK-------  281 (626)
T ss_pred             cCCceEEEe-------------------eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCC--CceEEe-------
Confidence            765421100                   00000111345555433 4678889999999885432  111100       


Q ss_pred             CcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc----
Q 005459          176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----  251 (696)
Q Consensus       176 ~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~----  251 (696)
                                                ... .|+..|.+          +....||.++- +..|..+..||..-.+    
T Consensus       282 --------------------------~~~-aH~ggv~~----------L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~  323 (626)
T KOG2106|consen  282 --------------------------QVH-AHDGGVFS----------LCMLRDGTLLS-GGKDRKIILWDDNYRKLRET  323 (626)
T ss_pred             --------------------------Eee-ecCCceEE----------EEEecCccEee-cCccceEEeccccccccccc
Confidence                                      001 33444444          33668898766 8889999999843211    


Q ss_pred             eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc
Q 005459          252 KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG  330 (696)
Q Consensus       252 ~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~  330 (696)
                      +++...+.++ ++=. .+. |.+|...+.|.-=++.+  ....+..+        |....+.++-.|+...+++++.|+.
T Consensus       324 elPe~~G~iRtv~e~-~~d-i~vGTtrN~iL~Gt~~~--~f~~~v~g--------h~delwgla~hps~~q~~T~gqdk~  391 (626)
T KOG2106|consen  324 ELPEQFGPIRTVAEG-KGD-ILVGTTRNFILQGTLEN--GFTLTVQG--------HGDELWGLATHPSKNQLLTCGQDKH  391 (626)
T ss_pred             cCchhcCCeeEEecC-CCc-EEEeeccceEEEeeecC--CceEEEEe--------cccceeeEEcCCChhheeeccCcce
Confidence            1234445666 4322 233 77888888887666664  34445566        8999999999999999999999999


Q ss_pred             EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-cee
Q 005459          331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKC  404 (696)
Q Consensus       331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~  404 (696)
                      +++|+  ..++..+..-  ..++.++.|+|.+     .++-|.   ...+-+.++..++..... ..++  +.+++ +..
T Consensus       392 v~lW~--~~k~~wt~~~--~d~~~~~~fhpsg-----~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~  461 (626)
T KOG2106|consen  392 VRLWN--DHKLEWTKII--EDPAECADFHPSG-----VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAF  461 (626)
T ss_pred             EEEcc--CCceeEEEEe--cCceeEeeccCcc-----eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCE
Confidence            99999  5566555443  3568889999986     344444   555667888777766554 5555  77777 999


Q ss_pred             eeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEE
Q 005459          405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD  479 (696)
Q Consensus       405 ~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~  479 (696)
                      ++.++.|+.+.++.+.......                  ...-.-|..||..+.||+|++|+.+-+.|-.+ .|.
T Consensus       462 lAvgs~d~~iyiy~Vs~~g~~y------------------~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  462 LAVGSHDNHIYIYRVSANGRKY------------------SRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             EEEecCCCeEEEEEECCCCcEE------------------EEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            9999999999998887766532                  11112234799999999999999999999988 883

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.9e-16  Score=153.40  Aligned_cols=274  Identities=14%  Similarity=0.176  Sum_probs=198.6

Q ss_pred             CCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec--CcEEEEEEE
Q 005459           20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS--SLYLHIFKV   96 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~--dg~l~l~~l   96 (696)
                      +...-+.|+++|.+++++ .|++++|+|+. .+.++....    + .+||. -.++|......+.-+++  |.+||.-++
T Consensus        15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~-~g~~~~ti~----s-kkyG~-~~~~Fth~~~~~i~sStk~d~tIryLsl   87 (311)
T KOG1446|consen   15 GKINSLDFSDDGLLLITSSEDDSLRLYDSL-SGKQVKTIN----S-KKYGV-DLACFTHHSNTVIHSSTKEDDTIRYLSL   87 (311)
T ss_pred             CceeEEEecCCCCEEEEecCCCeEEEEEcC-CCceeeEee----c-ccccc-cEEEEecCCceEEEccCCCCCceEEEEe
Confidence            455568999999998887 46699999995 555444332    2 24553 46788877777777776  778999998


Q ss_pred             EecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCC
Q 005459           97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSN  174 (696)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~  174 (696)
                      ...+...+..+|.                       ..|.  +++|-++.++.++-|.+|+.|+.........       
T Consensus        88 ~dNkylRYF~GH~-----------------------~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~-------  137 (311)
T KOG1446|consen   88 HDNKYLRYFPGHK-----------------------KRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL-------  137 (311)
T ss_pred             ecCceEEEcCCCC-----------------------ceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-------
Confidence            7555434444443                       3333  3456678899999999999854331111100       


Q ss_pred             CCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-
Q 005459          175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-  253 (696)
Q Consensus       175 ~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-  253 (696)
                                                               ........+++.|+|-++|++.....|++.|.+.-.+- 
T Consensus       138 -----------------------------------------l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgP  176 (311)
T KOG1446|consen  138 -----------------------------------------LNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGP  176 (311)
T ss_pred             -----------------------------------------EecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCC
Confidence                                                     00111234678899999999888878999998743210 


Q ss_pred             --------cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCe---EEEEECCCCCeE
Q 005459          254 --------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPV---SCIAWTPDNSAF  322 (696)
Q Consensus       254 --------~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V---~~l~~spdg~~l  322 (696)
                              ..+.....+.|||||+.|..+..++.+.+-|.-+ +..+.++..        +...-   .+.+|+|||+.+
T Consensus       177 F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~-G~~~~tfs~--------~~~~~~~~~~a~ftPds~Fv  247 (311)
T KOG1446|consen  177 FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD-GTVKSTFSG--------YPNAGNLPLSATFTPDSKFV  247 (311)
T ss_pred             ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-CcEeeeEee--------ccCCCCcceeEEECCCCcEE
Confidence                    1234445599999999999999999999999888 778888887        33322   577899999999


Q ss_pred             EEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce-eeEEEcCCCce
Q 005459          323 AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYR  384 (696)
Q Consensus       323 asg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~  384 (696)
                      .+|+.||+|.+|++.++..+..+++.....++++.|.|.-    ..+++++ .+.+|-+...+
T Consensus       248 l~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~----~mf~sa~s~l~fw~p~~~~  306 (311)
T KOG1446|consen  248 LSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY----AMFVSASSNLVFWLPDEDA  306 (311)
T ss_pred             EEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce----eeeeecCceEEEEeccccc
Confidence            9999999999999999999999998546779999999976    6777776 77889876443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=6.5e-18  Score=162.23  Aligned_cols=264  Identities=13%  Similarity=0.169  Sum_probs=208.4

Q ss_pred             cCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCe
Q 005459          204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGV  279 (696)
Q Consensus       204 ~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~  279 (696)
                      +.+|+..|..++          ......++.+++.|.+.++|.++.+.++   .||.+.+. +.|++.+.++++|+.|++
T Consensus       144 ~~GHkDGiW~Va----------a~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t  213 (481)
T KOG0300|consen  144 LEGHKDGIWHVA----------ADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET  213 (481)
T ss_pred             hcccccceeeeh----------hhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc
Confidence            345566666544          3333446677788999999999999886   78999998 999999999999999999


Q ss_pred             EEEEEcc------CCC---------------------------------ceeeEEeeccCCCCCCCCCCeEEEEECCCCC
Q 005459          280 VELYDLA------ESA---------------------------------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS  320 (696)
Q Consensus       280 v~vw~~~------~~~---------------------------------~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~  320 (696)
                      -.+|...      .+.                                 .++..+.        +|.+.|.+..|-..|+
T Consensus       214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt--------gH~~vV~a~dWL~gg~  285 (481)
T KOG0300|consen  214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT--------GHRAVVSACDWLAGGQ  285 (481)
T ss_pred             hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee--------ccccceEehhhhcCcc
Confidence            9999832      100                                 0111222        5999999999999999


Q ss_pred             eEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCC-ceEEEEecCCcceE
Q 005459          321 AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG-YRLYAIEEGSSERV  396 (696)
Q Consensus       321 ~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~-~~l~~~~~~~~~~v  396 (696)
                      .+++++.|++-.+||++++.++..|.|| ....+.+.-+|..    +.+++.+   +-++||... -+-+.+++||.+.|
T Consensus       286 Q~vTaSWDRTAnlwDVEtge~v~~LtGH-d~ELtHcstHptQ----rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtV  360 (481)
T KOG0300|consen  286 QMVTASWDRTANLWDVETGEVVNILTGH-DSELTHCSTHPTQ----RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTV  360 (481)
T ss_pred             eeeeeeccccceeeeeccCceeccccCc-chhccccccCCcc----eEEEEeccCceeEeccchhhcceeeeecccccce
Confidence            9999999999999999999999999999 6778888888887    7888777   889999863 35567889999999


Q ss_pred             EEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCc
Q 005459          397 LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG  474 (696)
Q Consensus       397 ~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG  474 (696)
                      ....|  +..+++++.|.++++|++.....                    |..-+....|++-+++|.-+..+|.--.+.
T Consensus       361 TS~vF~~dd~vVSgSDDrTvKvWdLrNMRs--------------------plATIRtdS~~NRvavs~g~~iIAiPhDNR  420 (481)
T KOG0300|consen  361 TSVVFNTDDRVVSGSDDRTVKVWDLRNMRS--------------------PLATIRTDSPANRVAVSKGHPIIAIPHDNR  420 (481)
T ss_pred             eEEEEecCCceeecCCCceEEEeeeccccC--------------------cceeeecCCccceeEeecCCceEEeccCCc
Confidence            66666  88899999999999999987766                    555555677899999999999999999999


Q ss_pred             cE-EEEccCCceEecCC-ccceeeeEEEeEeeeCcEEE
Q 005459          475 LI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLWLGKIIV  510 (696)
Q Consensus       475 ~i-~w~~~sg~w~~f~~-~~~e~~~~v~~~~w~~~~lv  510 (696)
                      .+ +||++..|...+.. ..|-+.-.|.+.+|..+..+
T Consensus       421 qvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~  458 (481)
T KOG0300|consen  421 QVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPA  458 (481)
T ss_pred             eEEEEecCCCccccCCcccccccceeeeeeeccccCcc
Confidence            99 99999887544331 12333334678888755433

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.79  E-value=7.5e-18  Score=171.59  Aligned_cols=286  Identities=14%  Similarity=0.192  Sum_probs=200.1

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEE
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT  332 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~  332 (696)
                      .+|..+|. +++.|.|..+++|+-|-+|++||+..-....+.++..+  .  .....|++++|||.|..|.+.+.....+
T Consensus       164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~--P--~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ--P--CETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccC--c--ccccccceeeecCCCCeEEEEecCccee
Confidence            56788888 99999999999999999999999875222222232211  1  2455799999999999998888888999


Q ss_pred             EEEccCCeeEEEee------------cccccceecccccCCCCCCccceecce---eeEEEcCCCce----EEEEecCCc
Q 005459          333 VWSVSGCRLMSTIR------------QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR----LYAIEEGSS  393 (696)
Q Consensus       333 vW~~~~~~~~~~l~------------~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~----l~~~~~~~~  393 (696)
                      |.|-.|...+...+            || ...+++..|+|...   +.+++.+   ++++|+....+    .+..-....
T Consensus       240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGH-ia~lt~g~whP~~k---~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g  315 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQYIRDMYNTKGH-IAELTCGCWHPDNK---EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG  315 (641)
T ss_pred             EEccCCceeeeeeccchhhhhhhccCCc-eeeeeccccccCcc---cceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence            99988876655443            44 67789999999862   4555555   99999987542    222222222


Q ss_pred             ceE----EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee--ecCCC--ceEEEEEcCCC
Q 005459          394 ERV----LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY--ISQNW--PVQHVAASKDG  464 (696)
Q Consensus       394 ~~v----~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~--~I~~va~s~dG  464 (696)
                      .+|    ..|++ ++.+++++.||++++|+......+                   |.-+  .+|+.  .|.|++||+||
T Consensus       316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-------------------p~~~vk~AH~~g~~Itsi~FS~dg  376 (641)
T KOG0772|consen  316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-------------------PVMKVKDAHLPGQDITSISFSYDG  376 (641)
T ss_pred             cccCceeeecCCCcchhhhcccCCceeeeecCCcccc-------------------cceEeeeccCCCCceeEEEecccc
Confidence            333    55666 889999999999999996332221                   2211  36776  89999999999


Q ss_pred             CEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC--cEEEEEEeecC-CCeEEEEEeeCCCCCccceeEEe
Q 005459          465 MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDS-SNTYELLFYPRYHLDQSSLLCRK  540 (696)
Q Consensus       465 ~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~-~~~~~lr~y~~~~l~~~~~~~~~  540 (696)
                      ++|++-|.|++. +||+..-+-.++.-...+..|.-+.+++.+  .+|+++..... .....|.||++..|+.-   .+.
T Consensus       377 ~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v---~ki  453 (641)
T KOG0772|consen  377 NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV---YKI  453 (641)
T ss_pred             chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE---EEe
Confidence            999999999999 999987665554444444555566677764  45565544332 23457999999766542   333


Q ss_pred             ecCC-ccE--EEEccCCEEEEEEcCceEEEEE
Q 005459          541 SLLA-KPI--VMDVYEDYILVTYRPFDVHIFH  569 (696)
Q Consensus       541 ~~~~-~~l--~~~~~~~~llv~~~d~~~~l~~  569 (696)
                      .++. .++  +-.+.=+.+.+++.|+.+++|.
T Consensus       454 ~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  454 DISTASVVRCLWHPKLNQIFAGSGDGTAHVYY  485 (641)
T ss_pred             cCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence            3333 122  2234557788899999999985

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.78  E-value=1.2e-17  Score=166.99  Aligned_cols=269  Identities=16%  Similarity=0.222  Sum_probs=199.0

Q ss_pred             eEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459          259 AVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS  337 (696)
Q Consensus       259 ~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~  337 (696)
                      .++ +...|..+.+.+|+.|.++.++|... .+.+.++++        |+-.|+++.|+|+...+++++.|..|+||++.
T Consensus       221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s-~q~l~~~~G--------h~kki~~v~~~~~~~~v~~aSad~~i~vws~~  291 (506)
T KOG0289|consen  221 GITALDIIPSSSKILTGGEDKTAVLFDKPS-NQILATLKG--------HTKKITSVKFHKDLDTVITASADEIIRVWSVP  291 (506)
T ss_pred             CeeEEeecCCCCcceecCCCCceEEEecch-hhhhhhccC--------cceEEEEEEeccchhheeecCCcceEEeeccc
Confidence            345 88888888999999999999999988 788889999        99999999999999999999999999999998


Q ss_pred             CCeeEEEeecccccceecccccCCCCCCccceecceeeEEE---cCCCceEEEEecCCcce--E--EEEec-ceeeeecc
Q 005459          338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQW---DEYGYRLYAIEEGSSER--V--LIFSF-GKCCLNRG  409 (696)
Q Consensus       338 ~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W---~~~~~~l~~~~~~~~~~--v--~~~~~-~~~~~s~~  409 (696)
                      .......+.-| ...|+.+..+|.+    +++++++....|   +.+.+..+.........  +  .+|++ +-.+.+|.
T Consensus       292 ~~s~~~~~~~h-~~~V~~ls~h~tg----eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt  366 (506)
T KOG0289|consen  292 LSSEPTSSRPH-EEPVTGLSLHPTG----EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT  366 (506)
T ss_pred             cccCccccccc-cccceeeeeccCC----cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC
Confidence            87766666666 7889999999999    999998855555   45555555544332233  3  66777 88888999


Q ss_pred             CCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEec
Q 005459          410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF  488 (696)
Q Consensus       410 ~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f  488 (696)
                      .|+.+++||+..+..                    ...|-+|.+||+.++|+.+|-|||++.+||.+ +||++.-+  .|
T Consensus       367 ~d~~vkiwdlks~~~--------------------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--n~  424 (506)
T KOG0289|consen  367 PDGVVKIWDLKSQTN--------------------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK--NF  424 (506)
T ss_pred             CCceEEEEEcCCccc--------------------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc--cc
Confidence            999999999987775                    56788999999999999999999999999988 99997543  34


Q ss_pred             CCccceeeeEEEeEee--eCcEEEEEEeecCCCeEEEEEeeCC----CCCccceeEEeecCCccEEEEccCCEEEEEEcC
Q 005459          489 GDITQEQKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPRY----HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRP  562 (696)
Q Consensus       489 ~~~~~e~~~~v~~~~w--~~~~lv~~~~~~~~~~~~lr~y~~~----~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d  562 (696)
                      .....+..+.+..+++  .+.+|+.+     +.+-++.+|...    +....+..|.  -.+.-+.+.-...++..++.|
T Consensus       425 kt~~l~~~~~v~s~~fD~SGt~L~~~-----g~~l~Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg~~aq~l~s~smd  497 (506)
T KOG0289|consen  425 KTIQLDEKKEVNSLSFDQSGTYLGIA-----GSDLQVYICKKKTKSWTEIKELADHS--GLSTGVRFGEHAQYLASTSMD  497 (506)
T ss_pred             ceeeccccccceeEEEcCCCCeEEee-----cceeEEEEEecccccceeeehhhhcc--cccceeeecccceEEeeccch
Confidence            3322222234555555  47777776     233344444421    2222222222  122235555566677777777


Q ss_pred             ceEEEEEE
Q 005459          563 FDVHIFHV  570 (696)
Q Consensus       563 ~~~~l~~~  570 (696)
                      ...++|.+
T Consensus       498 ~~l~~~a~  505 (506)
T KOG0289|consen  498 AILRLYAL  505 (506)
T ss_pred             hheEEeec
Confidence            77777653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=4.2e-18  Score=158.49  Aligned_cols=249  Identities=15%  Similarity=0.239  Sum_probs=175.7

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC--ceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcC
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKS  328 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~D  328 (696)
                      ..|++.+. +...--|+.||+++.|++|||+.++.++  .++.++.+        |.|||..++|-.  -|..||+++.|
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G--------h~GPVwqv~wahPk~G~iLAScsYD   79 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG--------HSGPVWKVAWAHPKFGTILASCSYD   79 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecC--------CCCCeeEEeecccccCcEeeEeecC
Confidence            46888887 7777789999999999999999999865  46778888        999999999976  89999999999


Q ss_pred             CcEEEEEccCCeeEE--EeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeee
Q 005459          329 RGLTVWSVSGCRLMS--TIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCL  406 (696)
Q Consensus       329 g~v~vW~~~~~~~~~--~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~  406 (696)
                      |.|.||.-.+++-..  ....| ..+|++++|.|.+                    +.                  -.++
T Consensus        80 gkVIiWke~~g~w~k~~e~~~h-~~SVNsV~waphe--------------------yg------------------l~La  120 (299)
T KOG1332|consen   80 GKVIIWKEENGRWTKAYEHAAH-SASVNSVAWAPHE--------------------YG------------------LLLA  120 (299)
T ss_pred             ceEEEEecCCCchhhhhhhhhh-cccceeecccccc--------------------cc------------------eEEE
Confidence            999999988874221  22223 5667777766654                    22                  2345


Q ss_pred             eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCC---C-----------CEEEEEeC
Q 005459          407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD---G-----------MFLAVAGL  472 (696)
Q Consensus       407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~d---G-----------~~la~ag~  472 (696)
                      .++.||.+.+........              |..   +.....|.--|.++++.|-   |           +.||+||-
T Consensus       121 casSDG~vsvl~~~~~g~--------------w~t---~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGc  183 (299)
T KOG1332|consen  121 CASSDGKVSVLTYDSSGG--------------WTT---SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGC  183 (299)
T ss_pred             EeeCCCcEEEEEEcCCCC--------------ccc---hhhhhccccccceeeecCcCCCccccccCcccccceeeccCC
Confidence            566677776655443311              111   1223467667888888886   6           77999999


Q ss_pred             CccE-EEEccCCceEecCCccceeeeEEEeEeeeCcE------EEEEEeecCCCeEEEEEeeCC-CCCc--cceeEEeec
Q 005459          473 HGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKI------IVVCNYIDSSNTYELLFYPRY-HLDQ--SSLLCRKSL  542 (696)
Q Consensus       473 dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~------lv~~~~~~~~~~~~lr~y~~~-~l~~--~~~~~~~~~  542 (696)
                      |.++ +|+..+++|++-... ..+.--|+.++|-+.+      |+.|     +.+..+-+|..+ ....  ..+++.  +
T Consensus       184 Dn~VkiW~~~~~~w~~e~~l-~~H~dwVRDVAwaP~~gl~~s~iAS~-----SqDg~viIwt~~~e~e~wk~tll~~--f  255 (299)
T KOG1332|consen  184 DNLVKIWKFDSDSWKLERTL-EGHKDWVRDVAWAPSVGLPKSTIASC-----SQDGTVIIWTKDEEYEPWKKTLLEE--F  255 (299)
T ss_pred             ccceeeeecCCcchhhhhhh-hhcchhhhhhhhccccCCCceeeEEe-----cCCCcEEEEEecCccCccccccccc--C
Confidence            9999 999999999863221 1112237888996433      3333     456788999886 2222  234444  4


Q ss_pred             CCcc--EEEEccCCEEEEEEcCceEEEEEEEEec
Q 005459          543 LAKP--IVMDVYEDYILVTYRPFDVHIFHVKLFG  574 (696)
Q Consensus       543 ~~~~--l~~~~~~~~llv~~~d~~~~l~~~~~~~  574 (696)
                      +.++  +..+..|+.|.|.+.|+.+.+|.-..+|
T Consensus       256 ~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~G  289 (299)
T KOG1332|consen  256 PDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDG  289 (299)
T ss_pred             CcceEEEEEeccccEEEEecCCcEEEEEEeCCCC
Confidence            4432  4556789999999999999999866654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.78  E-value=1.5e-17  Score=160.62  Aligned_cols=217  Identities=16%  Similarity=0.179  Sum_probs=166.1

Q ss_pred             EeCCcEEEEeeccCCceeeeeeeccee-----cC----CCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceee---E
Q 005459          227 YSNGQLMSCSVSKKGLKLAEFIKIDKE-----LG----SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIR---T  294 (696)
Q Consensus       227 s~dG~~~~~~~~d~~~~~~~~~~~~~~-----~~----~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~---~  294 (696)
                      -|+-.++++++.+..|++||..+++..     -+    ...+.+++|||||..|..|. ..+||+||+..++.-..   +
T Consensus       120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh
Confidence            366677788888889999999887643     12    24567799999999998765 57999999954343221   1


Q ss_pred             EeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459          295 VSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT  373 (696)
Q Consensus       295 ~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~  373 (696)
                      +...+.    +..|-+.+++||| |.+++|.|+.-..+-|+.-.++.++..+.+| .+.|+.+.|.+++    +.+.+|.
T Consensus       199 ~~~~k~----gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh-~gGvThL~~~edG----n~lfsGa  269 (406)
T KOG2919|consen  199 VTKGKF----GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH-GGGVTHLQWCEDG----NKLFSGA  269 (406)
T ss_pred             hhcccc----cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc-CCCeeeEEeccCc----Ceecccc
Confidence            111011    2478899999999 6679999999899999998899899999888 7789999999999    8888887


Q ss_pred             ----eeEEEcCCCce-EEEEecCCc----ceE-EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEe
Q 005459          374 ----SMMQWDEYGYR-LYAIEEGSS----ERV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL  442 (696)
Q Consensus       374 ----~~~~W~~~~~~-l~~~~~~~~----~~v-~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~  442 (696)
                          .+..||++... .+..+..|.    .+| +.+++ ++.+++|+.||.+++||+..-.+.                 
T Consensus       270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~-----------------  332 (406)
T KOG2919|consen  270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE-----------------  332 (406)
T ss_pred             cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc-----------------
Confidence                89999997643 344444443    344 56666 889999999999999998874442                 


Q ss_pred             ecCeeeecCCCceEEEEEcCCCCEEEEEeC
Q 005459          443 NLPVSYISQNWPVQHVAASKDGMFLAVAGL  472 (696)
Q Consensus       443 ~~~~~~~~~~~~I~~va~s~dG~~la~ag~  472 (696)
                        +..+..+...++.+++.|-=..+|+++.
T Consensus       333 --~sv~~~~sd~vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  333 --VSVTGNYSDTVNGVSLNPIMPILATSSG  360 (406)
T ss_pred             --ccccccccccccceecCcccceeeeccC
Confidence              5667778888999999999777887763

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.78  E-value=6.7e-19  Score=164.06  Aligned_cols=279  Identities=13%  Similarity=0.136  Sum_probs=197.6

Q ss_pred             CcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCC
Q 005459          203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRG  278 (696)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg  278 (696)
                      .+.++..+|.++.|++       ++|||-++++++.|+..-+-+..++.-   ..||.++|. +..+.+....|+++.|-
T Consensus         9 ~c~ghtrpvvdl~~s~-------itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadf   81 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSP-------ITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADF   81 (334)
T ss_pred             EEcCCCcceeEEeccC-------CCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccc
Confidence            3456778899999988       789999999999999888777766532   378999999 99999999999999999


Q ss_pred             eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe-eEEEeecccccceeccc
Q 005459          279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPI  357 (696)
Q Consensus       279 ~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~-~~~~l~~~~~~~v~~~~  357 (696)
                      +-+|||.-+ +..++.+.         |+--|..++|+.|.++|.+|+.++-+||+|+.... ....+.+| .       
T Consensus        82 takvw~a~t-gdelhsf~---------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~gh-t-------  143 (334)
T KOG0278|consen   82 TAKVWDAVT-GDELHSFE---------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGH-T-------  143 (334)
T ss_pred             hhhhhhhhh-hhhhhhhh---------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCC-C-------
Confidence            999999887 66565554         78889999999999999999999999999986542 11111111 0       


Q ss_pred             ccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcc
Q 005459          358 VKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL  437 (696)
Q Consensus       358 ~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~  437 (696)
                                   .|+...+|..+                    .+.++|+..|+++++||..++..             
T Consensus       144 -------------g~Ir~v~wc~e--------------------D~~iLSSadd~tVRLWD~rTgt~-------------  177 (334)
T KOG0278|consen  144 -------------GGIRTVLWCHE--------------------DKCILSSADDKTVRLWDHRTGTE-------------  177 (334)
T ss_pred             -------------CcceeEEEecc--------------------CceEEeeccCCceEEEEeccCcE-------------
Confidence                         11223333221                    45677889999999999988875             


Q ss_pred             eeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceEecCCccceeeeE--EEe--EeeeCcEEEEEE
Q 005459          438 KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQ--SKG--LLWLGKIIVVCN  513 (696)
Q Consensus       438 ~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~~f~~~~~e~~~~--v~~--~~w~~~~lv~~~  513 (696)
                             .+ -+..+.+|.++.+++||++|.++-..+.+.||..+=     +-. .+.++.  |..  +.=..++.|++ 
T Consensus       178 -------v~-sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf-----~~l-Ks~k~P~nV~SASL~P~k~~fVaG-  242 (334)
T KOG0278|consen  178 -------VQ-SLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF-----GLL-KSYKMPCNVESASLHPKKEFFVAG-  242 (334)
T ss_pred             -------EE-EEecCCCCcceeeccCCCEEEEecCceeEEeccccc-----cce-eeccCccccccccccCCCceEEec-
Confidence                   11 233466899999999999999998777779998762     211 112222  322  33334556655 


Q ss_pred             eecCCCeEEEEEeeCCCCCccceeEEeecCCcc--EEEEccCCEEEEEEcCceEEEEEEEE
Q 005459          514 YIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKP--IVMDVYEDYILVTYRPFDVHIFHVKL  572 (696)
Q Consensus       514 ~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~--l~~~~~~~~llv~~~d~~~~l~~~~~  572 (696)
                          .++..++-|+-. .++.--.+...-++|+  +.++|+|..-..++.|++++||.+..
T Consensus       243 ----ged~~~~kfDy~-TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  243 ----GEDFKVYKFDYN-TGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             ----CcceEEEEEecc-CCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence                444566666553 1111111222233333  56779999999999999999998753

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.77  E-value=1.7e-18  Score=172.20  Aligned_cols=261  Identities=16%  Similarity=0.164  Sum_probs=200.4

Q ss_pred             eeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEc
Q 005459          138 IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC  217 (696)
Q Consensus       138 ~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  217 (696)
                      +-++.+.++.|+.|..|++|.-.++... .                                 ...+.+..+.|++++  
T Consensus       183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-~---------------------------------~~tLaGs~g~it~~d--  226 (459)
T KOG0288|consen  183 FLRNSDTLATGGSDRIIKLWNVLGEKSE-L---------------------------------ISTLAGSLGNITSID--  226 (459)
T ss_pred             EccCcchhhhcchhhhhhhhhcccchhh-h---------------------------------hhhhhccCCCcceee--
Confidence            3445578888999988887544333310 0                                 013345566688877  


Q ss_pred             cCcceEEEEEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceee
Q 005459          218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIR  293 (696)
Q Consensus       218 ~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~  293 (696)
                              +.++++.++..++|+..++|+....+.   +.||.+-++ +.|......+++|+.|.+|++||+.. ..+.+
T Consensus       227 --------~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-~~C~k  297 (459)
T KOG0288|consen  227 --------FDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-AYCSK  297 (459)
T ss_pred             --------ecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-hheec
Confidence                    567888888889999999999877654   378999998 88877776699999999999999987 66666


Q ss_pred             EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459          294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT  373 (696)
Q Consensus       294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~  373 (696)
                      +.-.         ...+.+|..+  +..++||-.|++|+.||..+..+..+...+|  .|+++..++++    ..+.+.+
T Consensus       298 t~l~---------~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g----~~lLsss  360 (459)
T KOG0288|consen  298 TVLP---------GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDG----LELLSSS  360 (459)
T ss_pred             cccc---------cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc--ceeeEeeccCC----eEEeeec
Confidence            5543         3457777776  6789999999999999999999888888874  69999999998    5555555


Q ss_pred             ---eeEEEcCCCceEEEEecC------CcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEee
Q 005459          374 ---SMMQWDEYGYRLYAIEEG------SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN  443 (696)
Q Consensus       374 ---~~~~W~~~~~~l~~~~~~------~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~  443 (696)
                         ++.+.+..++++..++..      |+-.-.+|+| +.++++|+.|+++++|++..+.....+               
T Consensus       361 RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l---------------  425 (459)
T KOG0288|consen  361 RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVL---------------  425 (459)
T ss_pred             CCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEe---------------
Confidence               888899999888877653      3322388999 889999999999999999988753211               


Q ss_pred             cCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EE
Q 005459          444 LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY  478 (696)
Q Consensus       444 ~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w  478 (696)
                         .....+..|.+++|+|.|.+++++++++.+ +|
T Consensus       426 ---~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  426 ---SLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ---ccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence               111223369999999999999999999998 88

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.77  E-value=4.9e-17  Score=164.06  Aligned_cols=282  Identities=14%  Similarity=0.151  Sum_probs=199.8

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCcee-eEEe--------eccCCCC-CCCCCCeEEEEECCCCCeE
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLI-RTVS--------LYDWGYS-MDDTGPVSCIAWTPDNSAF  322 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~-~~~~--------~~~~~~~-~~h~g~V~~l~~spdg~~l  322 (696)
                      ..|.-.++ ++++|+.++..+++.||+|.=|++.+ +... ..+.        +.....+ ..|...+.+++.||||++|
T Consensus       139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~t-gk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl  217 (479)
T KOG0299|consen  139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLT-GKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL  217 (479)
T ss_pred             ccccCcceEEEeeccccceeecCCCcceeeeehhc-CcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence            34655554 99999999999999999999999987 3321 1111        1111122 2689999999999999999


Q ss_pred             EEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEE
Q 005459          323 AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF  399 (696)
Q Consensus       323 asg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~  399 (696)
                      |+|+.|..|.||+..+...++.+++| .+.|.+++|....    ..+.+++   ++++|+.+....+-++-+|++.|..+
T Consensus       218 atgg~d~~v~Iw~~~t~ehv~~~~gh-r~~V~~L~fr~gt----~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  218 ATGGRDRHVQIWDCDTLEHVKVFKGH-RGAVSSLAFRKGT----SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             EecCCCceEEEecCcccchhhccccc-ccceeeeeeecCc----cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence            99999999999999999999999998 8889999996654    4455555   89999999888888888999999888


Q ss_pred             ec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE
Q 005459          400 SF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI  476 (696)
Q Consensus       400 ~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i  476 (696)
                      +.   .+.+..++.|.++++|.+... .                    ...|.++.+.|.|++|-.+ ..+++|+.+|.|
T Consensus       293 daL~reR~vtVGgrDrT~rlwKi~ee-s--------------------qlifrg~~~sidcv~~In~-~HfvsGSdnG~I  350 (479)
T KOG0299|consen  293 DALSRERCVTVGGRDRTVRLWKIPEE-S--------------------QLIFRGGEGSIDCVAFIND-EHFVSGSDNGSI  350 (479)
T ss_pred             chhcccceEEeccccceeEEEecccc-c--------------------eeeeeCCCCCeeeEEEecc-cceeeccCCceE
Confidence            76   556666679999999998322 2                    2357778888999999665 467899999999


Q ss_pred             -EEEccCCceEecCC-ccc----e-----eeeEEEeEee--eCcEEEEEEeecCCCeEEEEEeeCC-CCCccceeEEeec
Q 005459          477 -LYDIRQKKWRVFGD-ITQ----E-----QKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSL  542 (696)
Q Consensus       477 -~w~~~sg~w~~f~~-~~~----e-----~~~~v~~~~w--~~~~lv~~~~~~~~~~~~lr~y~~~-~l~~~~~~~~~~~  542 (696)
                       +|++..++ .+|.. ..|    +     +.+=+.+++-  +.+.++.+     +.+..+|+|-.+ ++..-.++...++
T Consensus       351 aLWs~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asG-----S~~G~vrLW~i~~g~r~i~~l~~ls~  424 (479)
T KOG0299|consen  351 ALWSLLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASG-----SWSGCVRLWKIEDGLRAINLLYSLSL  424 (479)
T ss_pred             EEeeecccC-ceeEeeccccccCCccccccccceeeeEecccCceEEec-----CCCCceEEEEecCCccccceeeeccc
Confidence             99998876 23321 111    1     1112333332  34444444     566899999987 5443345555555


Q ss_pred             CCc--cEEEEccCCEEEEEEcCceEEEEEE
Q 005459          543 LAK--PIVMDVYEDYILVTYRPFDVHIFHV  570 (696)
Q Consensus       543 ~~~--~l~~~~~~~~llv~~~d~~~~l~~~  570 (696)
                      ..-  .+.++..+..++++. ...=++=++
T Consensus       425 ~GfVNsl~f~~sgk~ivagi-GkEhRlGRW  453 (479)
T KOG0299|consen  425 VGFVNSLAFSNSGKRIVAGI-GKEHRLGRW  453 (479)
T ss_pred             ccEEEEEEEccCCCEEEEec-cccccccee
Confidence            442  244556677777743 344444333

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=1.7e-17  Score=154.43  Aligned_cols=236  Identities=19%  Similarity=0.184  Sum_probs=174.7

Q ss_pred             CCcEEEEeeccCCceeeeeeecc------eecCCCCeEE-EEEcC--CCcEEEEEecCCeEEEEEccCCCce--eeEEee
Q 005459          229 NGQLMSCSVSKKGLKLAEFIKID------KELGSGDAVC-ASIAP--EQQILAVGTRRGVVELYDLAESASL--IRTVSL  297 (696)
Q Consensus       229 dG~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~v~-v~~sp--~~~~la~g~~dg~v~vw~~~~~~~~--~~~~~~  297 (696)
                      -|+.+++++.|+++++.......      .+.||.+++. ++|.+  -|.+||+++-||.|.||.-.. ++-  ......
T Consensus        22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~-g~w~k~~e~~~  100 (299)
T KOG1332|consen   22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN-GRWTKAYEHAA  100 (299)
T ss_pred             hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC-Cchhhhhhhhh
Confidence            48899999999999998876432      2379999999 88866  699999999999999999765 432  223333


Q ss_pred             ccCCCCCCCCCCeEEEEECCCCC--eEEEEEcCCcEEEEEccCC--eeEEEeecccccceecccccCCCC----------
Q 005459          298 YDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQD----------  363 (696)
Q Consensus       298 ~~~~~~~~h~g~V~~l~~spdg~--~lasg~~Dg~v~vW~~~~~--~~~~~l~~~~~~~v~~~~~sp~~~----------  363 (696)
                              |.+.|++++|.|.++  .||+|+.||.|.|.+..+.  -....+...|.-.|+++.+.|...          
T Consensus       101 --------h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~  172 (299)
T KOG1332|consen  101 --------HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPA  172 (299)
T ss_pred             --------hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcc
Confidence                    999999999999654  8899999999999987543  333344443466788888887631          


Q ss_pred             CCccceecce---eeEEEcCCCc--eEEEEecCCcceE--EEEec-----ceeeeeccCCCCceeeeeeecCCeEEEEec
Q 005459          364 CKYEPLMSGT---SMMQWDEYGY--RLYAIEEGSSERV--LIFSF-----GKCCLNRGVSGMTYARQVIYGEDRLLVVQS  431 (696)
Q Consensus       364 ~~~~~l~sg~---~~~~W~~~~~--~l~~~~~~~~~~v--~~~~~-----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~  431 (696)
                      .+-..|+||.   .+++|..+.+  .+-..+.+|.+.|  ++..|     ...++|++.|+++.+|... .+..      
T Consensus       173 ~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~-~e~e------  245 (299)
T KOG1332|consen  173 AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD-EEYE------  245 (299)
T ss_pred             cccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec-CccC------
Confidence            1224578877   8999988765  3444577899888  55554     4578999999999999865 2211      


Q ss_pred             CCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEcc-CCceEecCC
Q 005459          432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR-QKKWRVFGD  490 (696)
Q Consensus       432 ~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~-sg~w~~f~~  490 (696)
                            .|+    +.-+.....++..++||..|..||+++.|..+ +|.-+ .|+|+..+.
T Consensus       246 ------~wk----~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~~  296 (299)
T KOG1332|consen  246 ------PWK----KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVGE  296 (299)
T ss_pred             ------ccc----ccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEccc
Confidence                  121    11122345679999999999999999999999 99754 568987554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.5e-16  Score=153.11  Aligned_cols=243  Identities=18%  Similarity=0.235  Sum_probs=163.6

Q ss_pred             CCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459          255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW  334 (696)
Q Consensus       255 ~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW  334 (696)
                      .+..+.|+.||+-|.+||+||.||.|.+||+.+ ...-+.+.+        |..+|.+++||+||+.|.+++.|..+++|
T Consensus        22 d~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-~~iar~lsa--------H~~pi~sl~WS~dgr~LltsS~D~si~lw   92 (405)
T KOG1273|consen   22 DNPLAECCQFSRWGDYLAVGCANGRVVIYDFDT-FRIARMLSA--------HVRPITSLCWSRDGRKLLTSSRDWSIKLW   92 (405)
T ss_pred             cCCccceEEeccCcceeeeeccCCcEEEEEccc-cchhhhhhc--------cccceeEEEecCCCCEeeeecCCceeEEE
Confidence            344588899999999999999999999999998 666677777        99999999999999999999999999999


Q ss_pred             EccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCC
Q 005459          335 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGM  413 (696)
Q Consensus       335 ~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~  413 (696)
                      |+..+.+++.++-.  +.|+.+.|+|...                   .+.+.........+..|+. ...++.-+.|+.
T Consensus        93 Dl~~gs~l~rirf~--spv~~~q~hp~k~-------------------n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~d  151 (405)
T KOG1273|consen   93 DLLKGSPLKRIRFD--SPVWGAQWHPRKR-------------------NKCVATIMEESPVVIDFSDPKHSVLPKDDDGD  151 (405)
T ss_pred             eccCCCceeEEEcc--CccceeeeccccC-------------------CeEEEEEecCCcEEEEecCCceeeccCCCccc
Confidence            99999888888764  5677777777641                   1122222222334455553 333333333332


Q ss_pred             ceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCcc
Q 005459          414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDIT  492 (696)
Q Consensus       414 ~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~  492 (696)
                      .                                     |..-.+..|.+.|+|+.+|...|.+ +|+..|-+...--...
T Consensus       152 l-------------------------------------n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit  194 (405)
T KOG1273|consen  152 L-------------------------------------NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT  194 (405)
T ss_pred             c-------------------------------------ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec
Confidence            1                                     1112234799999999999999999 9999987533211111


Q ss_pred             ceeeeEEEe--EeeeCcEEEEEEeecCCCeEEEEEeeCCCCCcc----ceeEEe-------ecCCccEEEEccCCEEEEE
Q 005459          493 QEQKIQSKG--LLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQS----SLLCRK-------SLLAKPIVMDVYEDYILVT  559 (696)
Q Consensus       493 ~e~~~~v~~--~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~----~~~~~~-------~~~~~~l~~~~~~~~llv~  559 (696)
                      .-+  .++.  +.-.+..++.-     ..+..||.|+.+.+++.    .+--.+       +++-.-..++..|.|++.+
T Consensus       195 s~~--~IK~I~~s~~g~~liiN-----tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~  267 (405)
T KOG1273|consen  195 SVQ--AIKQIIVSRKGRFLIIN-----TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAG  267 (405)
T ss_pred             hhe--eeeEEEEeccCcEEEEe-----cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEec
Confidence            111  1333  33346666653     45689999998644332    111001       1222346777788998886


Q ss_pred             EcCceEEEEEEEE
Q 005459          560 YRPFDVHIFHVKL  572 (696)
Q Consensus       560 ~~d~~~~l~~~~~  572 (696)
                      + ...=.||.++-
T Consensus       268 s-~~aHaLYIWE~  279 (405)
T KOG1273|consen  268 S-ARAHALYIWEK  279 (405)
T ss_pred             c-ccceeEEEEec
Confidence            6 44556777763

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.76  E-value=2.6e-17  Score=173.45  Aligned_cols=246  Identities=14%  Similarity=0.154  Sum_probs=192.3

Q ss_pred             eCCcEEEEeeccCCceeeeeeeccee-----cCCCCeEE--EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          228 SNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC--ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       228 ~dG~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~--v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      .++-.++.++.|+++++|+-...+-+     .+|.+.+.  +++-+ ++-.|.+|+.|.+|.+|.... ..++.++++  
T Consensus        23 ~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~-~~P~~~Lkg--   99 (745)
T KOG0301|consen   23 TDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ-AEPLYTLKG--   99 (745)
T ss_pred             cCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC-CCchhhhhc--
Confidence            45557788888999999986543221     33444432  44443 555689999999999999988 889999999  


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM  376 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~  376 (696)
                            |+..|.+++---++. |+||+.|.++++|-..  ++..++.+| +.+|+++++-|.+     .++||+   +++
T Consensus       100 ------H~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH-~asVWAv~~l~e~-----~~vTgsaDKtIk  164 (745)
T KOG0301|consen  100 ------HKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGH-TASVWAVASLPEN-----TYVTGSADKTIK  164 (745)
T ss_pred             ------cccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCc-chheeeeeecCCC-----cEEeccCcceee
Confidence                  999999999888888 9999999999999764  456678888 8899999988874     567777   899


Q ss_pred             EEcCCCceEEEEecCCcceEEEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCc
Q 005459          377 QWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP  454 (696)
Q Consensus       377 ~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  454 (696)
                      +|..  ++++.++.+|.+-|..+..  ...++|++.|+.++.|++ .|+.                    ...+.+|..-
T Consensus       165 lWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~--------------------l~~~~ghtn~  221 (745)
T KOG0301|consen  165 LWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEV--------------------LLEMHGHTNF  221 (745)
T ss_pred             eccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCce--------------------eeeeeccceE
Confidence            9985  7789999999999965555  668999999999999997 4443                    5678899999


Q ss_pred             eEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeE-----EE-eEeeeCcEEEEEEeecCCCeEEEEEee
Q 005459          455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ-----SK-GLLWLGKIIVVCNYIDSSNTYELLFYP  527 (696)
Q Consensus       455 I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~-----v~-~~~w~~~~lv~~~~~~~~~~~~lr~y~  527 (696)
                      |++++...+++.++++|+|+++ +|+..          ..++.+.     |. .-+|.++-++++|+     ++.+|+|.
T Consensus       222 vYsis~~~~~~~Ivs~gEDrtlriW~~~----------e~~q~I~lPttsiWsa~~L~NgDIvvg~S-----DG~VrVfT  286 (745)
T KOG0301|consen  222 VYSISMALSDGLIVSTGEDRTLRIWKKD----------ECVQVITLPTTSIWSAKVLLNGDIVVGGS-----DGRVRVFT  286 (745)
T ss_pred             EEEEEecCCCCeEEEecCCceEEEeecC----------ceEEEEecCccceEEEEEeeCCCEEEecc-----CceEEEEE
Confidence            9999999999999999999999 99865          1223333     44 23444555666633     47899998


Q ss_pred             CC
Q 005459          528 RY  529 (696)
Q Consensus       528 ~~  529 (696)
                      .+
T Consensus       287 ~~  288 (745)
T KOG0301|consen  287 VD  288 (745)
T ss_pred             ec
Confidence            64

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=4.1e-15  Score=161.72  Aligned_cols=263  Identities=13%  Similarity=0.137  Sum_probs=174.9

Q ss_pred             ceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecC
Q 005459           22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE  100 (696)
Q Consensus        22 ~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~  100 (696)
                      -.-|.+.|+|.++.++ +++.|++|+...+       ...++++...|+- ..+..-++..+++++.++++.+|+...+.
T Consensus        16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd-------~e~P~ti~~~g~~-v~~ia~~s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   16 LTLICYDPDGEFICTCGSDGDIRKWKTNSD-------EEEPETIDISGEL-VSSIACYSNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             eEEEEEcCCCCEEEEecCCCceEEeecCCc-------ccCCchhhccCce-eEEEeecccceEEeeccceEEEeeCCCCC
Confidence            4457899999999888 6789999998622       1334444434432 34556788899999999999999987544


Q ss_pred             cccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccc
Q 005459          101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA  180 (696)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~  180 (696)
                      ..-.          +.      ++..     ...++++..+|+.++.|++|-.|.++.-+.....               
T Consensus        88 ~~~i----------L~------Rftl-----p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~---------------  131 (933)
T KOG1274|consen   88 EDTI----------LA------RFTL-----PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE---------------  131 (933)
T ss_pred             ccce----------ee------eeec-----cceEEEEecCCcEEEeecCceeEEEEeccccchh---------------
Confidence            2110          11      1111     1134567778899999999999988765543221               


Q ss_pred             cccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCce-eeeeeecceecCC-CC
Q 005459          181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDKELGS-GD  258 (696)
Q Consensus       181 ~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~-~~~~~~~~~~~~~-~~  258 (696)
                                           ..+.+++..|.++.|+|.++.+++.+-||++.+...+++.+. .|....+ ..... ..
T Consensus       132 ---------------------~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k-~n~~~~s~  189 (933)
T KOG1274|consen  132 ---------------------KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK-DNEFILSR  189 (933)
T ss_pred             ---------------------eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCc-cccccccc
Confidence                                 134467788988886665555555555555444443333322 1111111 00111 23


Q ss_pred             eEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459          259 AVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS  337 (696)
Q Consensus       259 ~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~  337 (696)
                      ..+ ++|+|++..+|+.+.|++|++|+... .+....++...      |...+.++.|||.|++||++..||.|.|||+.
T Consensus       190 i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~------~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  190 ICTRLAWHPKGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKL------SSSKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             eeeeeeecCCCCeEEeeccCCeEEEEccCC-ceeheeecccc------cccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence            344 99999999999999999999999887 66666666532      44449999999999999999999999999998


Q ss_pred             CCeeEEEeecccccceecccccCCC
Q 005459          338 GCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       338 ~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      +...    ... ...|.+.+|.|+.
T Consensus       263 t~~~----~~~-~~~Vc~~aw~p~~  282 (933)
T KOG1274|consen  263 THER----HEF-KRAVCCEAWKPNA  282 (933)
T ss_pred             cchh----ccc-cceeEEEecCCCC
Confidence            6221    111 3457777777765

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.76  E-value=3.8e-17  Score=172.19  Aligned_cols=213  Identities=16%  Similarity=0.259  Sum_probs=172.4

Q ss_pred             eCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459          228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS  303 (696)
Q Consensus       228 ~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~  303 (696)
                      .|+-.+++++.|.++.+|.......+   .+|..-|| ++...++. +++|+.|.++++|...   ++...+.+      
T Consensus        69 ~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~---~l~~~l~g------  138 (745)
T KOG0301|consen   69 SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG---ELVYSLQG------  138 (745)
T ss_pred             ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch---hhhcccCC------
Confidence            45556777888998888887666553   79999999 88888887 9999999999999864   45556777      


Q ss_pred             CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcC
Q 005459          304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE  380 (696)
Q Consensus       304 ~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~  380 (696)
                        |+.+|++++.-|++ .++||+.|++|++|.-  ++++.+|.+| ++.|..+++-|+.     .++|.+   .++.|+.
T Consensus       139 --H~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gH-tD~VRgL~vl~~~-----~flScsNDg~Ir~w~~  207 (745)
T KOG0301|consen  139 --HTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGH-TDCVRGLAVLDDS-----HFLSCSNDGSIRLWDL  207 (745)
T ss_pred             --cchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccc-hhheeeeEEecCC-----CeEeecCCceEEEEec
Confidence              99999999999998 8899999999999974  7789999998 8899999998874     345544   8999999


Q ss_pred             CCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEE
Q 005459          381 YGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH  457 (696)
Q Consensus       381 ~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~  457 (696)
                       +++.+....+|..-++.++.   ...++|++.|+++++|...  +.              -+.+++|.      -.|++
T Consensus       208 -~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~--------------~q~I~lPt------tsiWs  264 (745)
T KOG0301|consen  208 -DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--EC--------------VQVITLPT------TSIWS  264 (745)
T ss_pred             -cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ce--------------EEEEecCc------cceEE
Confidence             56677777899999988884   7789999999999999854  11              12333443      25888


Q ss_pred             EEEcCCCCEEEEEeCCccE-EEEccCCce
Q 005459          458 VAASKDGMFLAVAGLHGLI-LYDIRQKKW  485 (696)
Q Consensus       458 va~s~dG~~la~ag~dG~i-~w~~~sg~w  485 (696)
                      +.+=++|. +++||.||.+ +|.....||
T Consensus       265 a~~L~NgD-Ivvg~SDG~VrVfT~~k~R~  292 (745)
T KOG0301|consen  265 AKVLLNGD-IVVGGSDGRVRVFTVDKDRK  292 (745)
T ss_pred             EEEeeCCC-EEEeccCceEEEEEeccccc
Confidence            88888886 6789999999 999876654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=6.4e-18  Score=176.61  Aligned_cols=207  Identities=16%  Similarity=0.194  Sum_probs=165.7

Q ss_pred             EEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc-----eecCCCCeEE-EEE-cCCCcEEEEEecCCeEEEE
Q 005459          211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID-----KELGSGDAVC-ASI-APEQQILAVGTRRGVVELY  283 (696)
Q Consensus       211 i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~v~-v~~-sp~~~~la~g~~dg~v~vw  283 (696)
                      +..|+++.+.-.-++..-+|+.+++++.|.++++|+.....     .+..|.+-|. +++ .++..++|+|+-|+.|.||
T Consensus        66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflW  145 (735)
T KOG0308|consen   66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLW  145 (735)
T ss_pred             hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEE
Confidence            33444444443334466789999999999999999987653     2267888886 888 8899999999999999999


Q ss_pred             EccCCCc-eeeEEeeccC-CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCC
Q 005459          284 DLAESAS-LIRTVSLYDW-GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN  361 (696)
Q Consensus       284 ~~~~~~~-~~~~~~~~~~-~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~  361 (696)
                      |++.... ++..+....- ....++..+|.+++-.+.|..+++|+..+-+++||..+++-+..|+|| +..|..+..++|
T Consensus       146 Din~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH-TdNVr~ll~~dD  224 (735)
T KOG0308|consen  146 DINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH-TDNVRVLLVNDD  224 (735)
T ss_pred             EccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc-ccceEEEEEcCC
Confidence            9997322 3322221111 111258899999999999999999999999999999999999999998 788999999999


Q ss_pred             CCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeec
Q 005459          362 QDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYG  422 (696)
Q Consensus       362 ~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~  422 (696)
                      |    ..++|++   ++++|+++..+++.++..|.+.||++..   -+.+.+|+.|+.+..-++...
T Consensus       225 G----t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  225 G----TRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             C----CeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            9    8888887   9999999999999999999999988866   566889999998877666554

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.76  E-value=2e-16  Score=159.79  Aligned_cols=177  Identities=16%  Similarity=0.250  Sum_probs=143.1

Q ss_pred             EEEEeeccCCceeeeeeecce----------ecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCC-CceeeEEeec
Q 005459          232 LMSCSVSKKGLKLAEFIKIDK----------ELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAES-ASLIRTVSLY  298 (696)
Q Consensus       232 ~~~~~~~d~~~~~~~~~~~~~----------~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~-~~~~~~~~~~  298 (696)
                      .+++++.|.++.+||+.....          ..+|++.+. ++|+| +..++++.+.|+.+.|||++.. .++.+...+ 
T Consensus       192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a-  270 (422)
T KOG0264|consen  192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA-  270 (422)
T ss_pred             eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-
Confidence            466677888999998753221          168999999 99999 5789999999999999999951 444555566 


Q ss_pred             cCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCC-eeEEEeecccccceecccccCCCCCCccceecce---
Q 005459          299 DWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---  373 (696)
Q Consensus       299 ~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~-~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---  373 (696)
                             |+++|+|++|+| ++..||+|+.|++|++||+..- +.+.++.+| ...|..+.|+|..+   ..++|++   
T Consensus       271 -------h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~e---tvLASSg~D~  339 (422)
T KOG0264|consen  271 -------HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNE---TVLASSGTDR  339 (422)
T ss_pred             -------cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC-CcceEEEEeCCCCC---ceeEecccCC
Confidence                   999999999999 7889999999999999999763 468888888 78899999999872   3444444   


Q ss_pred             eeEEEcCCC--------------ceEEEEecCCcceEEEEec----ceeeeeccCCCCceeeeee
Q 005459          374 SMMQWDEYG--------------YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVI  420 (696)
Q Consensus       374 ~~~~W~~~~--------------~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~~~  420 (696)
                      .+++||+..              -+++.+..||...|..|++    .-.++|.+.|+.+++|...
T Consensus       340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            899999742              2577888899999966666    5678999999999999864

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=2e-17  Score=158.87  Aligned_cols=235  Identities=10%  Similarity=0.099  Sum_probs=183.9

Q ss_pred             ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459          253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL  331 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v  331 (696)
                      +.||.+.+. ++.......+++++.|.+.++|.+++ +.++.+..+        |.|.|++++|+|.|..+++++.|++-
T Consensus       144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~G--------H~GSVNsikfh~s~~L~lTaSGD~ta  214 (481)
T KOG0300|consen  144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATYTG--------HTGSVNSIKFHNSGLLLLTASGDETA  214 (481)
T ss_pred             hcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeeecc--------cccceeeEEeccccceEEEccCCcch
Confidence            368999999 88888888999999999999999998 899999999        99999999999999999999999999


Q ss_pred             EEEEc------cC----------------------------------CeeEEEeecccccceecccccCCCCCCccceec
Q 005459          332 TVWSV------SG----------------------------------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS  371 (696)
Q Consensus       332 ~vW~~------~~----------------------------------~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~s  371 (696)
                      .||..      ..                                  ...++.|.+| ...|.+..|-..+    +.+++
T Consensus       215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH-~~vV~a~dWL~gg----~Q~vT  289 (481)
T KOG0300|consen  215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH-RAVVSACDWLAGG----QQMVT  289 (481)
T ss_pred             HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc-ccceEehhhhcCc----ceeee
Confidence            99962      10                                  1135667776 6777777777666    78888


Q ss_pred             ce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecC
Q 005459          372 GT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP  445 (696)
Q Consensus       372 g~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~  445 (696)
                      ++   +..+||.++++++..+.||+..+  .+-.+ .+.+++.+.|.+.++||+...-..                   .
T Consensus       290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~s-------------------V  350 (481)
T KOG0300|consen  290 ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQS-------------------V  350 (481)
T ss_pred             eeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcce-------------------e
Confidence            88   88999999999999999999988  34444 788899999999999998744332                   4


Q ss_pred             eeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEee--eCcEEEEEEeecCCCeEE
Q 005459          446 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW--LGKIIVVCNYIDSSNTYE  522 (696)
Q Consensus       446 ~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w--~~~~lv~~~~~~~~~~~~  522 (696)
                      ..|.+|...|.++.|..|.+ +++|+.|.++ +||+...|-.+-...   .+-.+..+.-  .+.+|..     ..+..+
T Consensus       351 ~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIR---tdS~~NRvavs~g~~iIAi-----PhDNRq  421 (481)
T KOG0300|consen  351 AVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIR---TDSPANRVAVSKGHPIIAI-----PHDNRQ  421 (481)
T ss_pred             eeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeee---cCCccceeEeecCCceEEe-----ccCCce
Confidence            57889999999999988765 7799999999 999987663321110   0111222222  2333333     256689


Q ss_pred             EEEeeCC
Q 005459          523 LLFYPRY  529 (696)
Q Consensus       523 lr~y~~~  529 (696)
                      +|+|+..
T Consensus       422 vRlfDln  428 (481)
T KOG0300|consen  422 VRLFDLN  428 (481)
T ss_pred             EEEEecC
Confidence            9999864

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=1.4e-17  Score=177.39  Aligned_cols=182  Identities=16%  Similarity=0.301  Sum_probs=140.7

Q ss_pred             CCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459          229 NGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS  303 (696)
Q Consensus       229 dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~  303 (696)
                      .-.+++++++|++++.||....+..   .+..++++ |.|+| .+..+|++..+|.+++||++...+....+..      
T Consensus       145 ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A------  218 (839)
T KOG0269|consen  145 EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA------  218 (839)
T ss_pred             CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc------
Confidence            3456778888999999998754322   45677888 99999 5889999999999999999987777777777      


Q ss_pred             CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee--EEEeecccccceecccccCCCCCCccceecce-----eeE
Q 005459          304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-----SMM  376 (696)
Q Consensus       304 ~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~--~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-----~~~  376 (696)
                        |.|+|.|+.|+|++.+||+|++|+.|+||++.+.+.  +.++..  ..+|..++|.|.-.   ..|++.+     .+.
T Consensus       219 --H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT--iapv~rVkWRP~~~---~hLAtcsmv~dtsV~  291 (839)
T KOG0269|consen  219 --HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT--IAPVGRVKWRPARS---YHLATCSMVVDTSVH  291 (839)
T ss_pred             --ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee--cceeeeeeeccCcc---chhhhhhccccceEE
Confidence              999999999999999999999999999999987653  344433  46789999999862   3344443     899


Q ss_pred             EEcCC-CceEEEEecCCcceEEEEec----ceeeeeccCCCCceeeeeeecC
Q 005459          377 QWDEY-GYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGE  423 (696)
Q Consensus       377 ~W~~~-~~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~~~~~~  423 (696)
                      +||+. .|-...++..|.+-+..+.+    ...+.+++.|+++....+..+.
T Consensus       292 VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat  343 (839)
T KOG0269|consen  292 VWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT  343 (839)
T ss_pred             EEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence            99986 45667777788877743333    4567789999988665554443

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.75  E-value=1.3e-17  Score=163.32  Aligned_cols=270  Identities=16%  Similarity=0.171  Sum_probs=182.5

Q ss_pred             cccEEEEcCCC-cEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEE
Q 005459           69 ENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLL  147 (696)
Q Consensus        69 ~~~~v~wsPDg-~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv  147 (696)
                      .+.+++=.|.. +.+|+++.||.|+|||+.....                       ...+..+.+.|..++-+.+.++.
T Consensus        68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-----------------------~~~f~AH~G~V~Gi~v~~~~~~t  124 (433)
T KOG0268|consen   68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-----------------------IRTFKAHEGLVRGICVTQTSFFT  124 (433)
T ss_pred             ccchhhcCcchhhhhhccccCceEEEEehhhhhh-----------------------hheeecccCceeeEEecccceEE
Confidence            45567777776 7899999999999999974322                       12245666777777777889999


Q ss_pred             EecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEE
Q 005459          148 GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY  227 (696)
Q Consensus       148 ~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s  227 (696)
                      +++|.++..|..++.....+                                      ..++.+..+.+..         
T Consensus       125 vgdDKtvK~wk~~~~p~~ti--------------------------------------lg~s~~~gIdh~~---------  157 (433)
T KOG0268|consen  125 VGDDKTVKQWKIDGPPLHTI--------------------------------------LGKSVYLGIDHHR---------  157 (433)
T ss_pred             ecCCcceeeeeccCCcceee--------------------------------------ecccccccccccc---------
Confidence            99999999866554211100                                      0122233333222         


Q ss_pred             eCCcEEEEeeccCCceeeeeeeccee----cCCCCeEEEEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC
Q 005459          228 SNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY  302 (696)
Q Consensus       228 ~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~  302 (696)
                       .+..+++++.  .+.+||......+    -+-....++.|||- -..||++..|+.|.|||++. ..+++.+..     
T Consensus       158 -~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~-~~Pl~KVi~-----  228 (433)
T KOG0268|consen  158 -KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ-ASPLKKVIL-----  228 (433)
T ss_pred             -ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEeccc-CCccceeee-----
Confidence             2233443333  3668887533222    23344456999995 67888888999999999998 677665554     


Q ss_pred             CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC-eeEEEeecccccceecccccCCCCCCccceecceeeEEEcCC
Q 005459          303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEY  381 (696)
Q Consensus       303 ~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~-~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~  381 (696)
                          +-.-+.|+|+|.+..+.+|.+|..+..+|+..- +.+...++| .+.|..+.|+|.                    
T Consensus       229 ----~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh-vsAV~dVdfspt--------------------  283 (433)
T KOG0268|consen  229 ----TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH-VSAVMDVDFSPT--------------------  283 (433)
T ss_pred             ----eccccceecCccccceeeccccccceehhhhhhcccchhhccc-ceeEEEeccCCC--------------------
Confidence                344678999999999999999999999997542 223333444 344555555554                    


Q ss_pred             CceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee-cCCCceEEEEE
Q 005459          382 GYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQHVAA  460 (696)
Q Consensus       382 ~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~I~~va~  460 (696)
                                          |+.++|||+|.+++++.+..+..|                    ..|. ..--.|.++.|
T Consensus       284 --------------------G~EfvsgsyDksIRIf~~~~~~SR--------------------diYhtkRMq~V~~Vk~  323 (433)
T KOG0268|consen  284 --------------------GQEFVSGSYDKSIRIFPVNHGHSR--------------------DIYHTKRMQHVFCVKY  323 (433)
T ss_pred             --------------------cchhccccccceEEEeecCCCcch--------------------hhhhHhhhheeeEEEE
Confidence                                455677888888888887766653                    1121 11124899999


Q ss_pred             cCCCCEEEEEeCCccE-EEEccC
Q 005459          461 SKDGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       461 s~dG~~la~ag~dG~i-~w~~~s  482 (696)
                      |.|.+|+.+|+.||.+ +|....
T Consensus       324 S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  324 SMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             eccccEEEecCCCcceeeeecch
Confidence            9999999999999999 998654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.74  E-value=2.4e-17  Score=161.42  Aligned_cols=250  Identities=16%  Similarity=0.159  Sum_probs=183.1

Q ss_pred             cCCCCeEE-EEEcCCC-cEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459          254 LGSGDAVC-ASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL  331 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~-~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v  331 (696)
                      .||.+.|. ++=+|.. ..+|+|+.||.|++||+.. ..++.++..        |.|.|..|+++.  ..+++++.|++|
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-R~~~~~f~A--------H~G~V~Gi~v~~--~~~~tvgdDKtv  131 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-RECIRTFKA--------HEGLVRGICVTQ--TSFFTVGDDKTV  131 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhh-hhhhheeec--------ccCceeeEEecc--cceEEecCCcce
Confidence            57888887 8999987 8999999999999999998 788999999        999999999987  788999999999


Q ss_pred             EEEEccCCeeEEEeecccccceecccccCCCCCCccceecce-eeEEEcCCCceEEEEecCCcceEEE--Eec--ceeee
Q 005459          332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERVLI--FSF--GKCCL  406 (696)
Q Consensus       332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~~~~~~v~~--~~~--~~~~~  406 (696)
                      +.|.+.+. ..+++.+.  +.+..+.-+..+    ..++|++ .+-+||......+..+.-..+.|..  |++  ...++
T Consensus       132 K~wk~~~~-p~~tilg~--s~~~gIdh~~~~----~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa  204 (433)
T KOG0268|consen  132 KQWKIDGP-PLHTILGK--SVYLGIDHHRKN----SVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA  204 (433)
T ss_pred             eeeeccCC-cceeeecc--cccccccccccc----ccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence            99998875 56666542  333333322222    5566666 8889999877777666555666644  444  44567


Q ss_pred             eccCCCCceeeeeeecCCeEEEEecCCCCccee---------------------EEee-cCeeeecCCCceEEEEEcCCC
Q 005459          407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI---------------------LHLN-LPVSYISQNWPVQHVAASKDG  464 (696)
Q Consensus       407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w---------------------~~~~-~~~~~~~~~~~I~~va~s~dG  464 (696)
                      +++.|+++.++|+.++..-.-+..+--+..+.|                     +.++ ....|.+|...|.+++|||.|
T Consensus       205 s~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG  284 (433)
T KOG0268|consen  205 SCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG  284 (433)
T ss_pred             eeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc
Confidence            777999999999988764332322222222222                     1111 233677899999999999999


Q ss_pred             CEEEEEeCCccE-EEEccCCceEecCCccceeeeE-EEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459          465 MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ-SKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       465 ~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~-v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      +-+++||-|.+| +|.++.+.-+   +.-+...++ |.++.|.  ..+++.+     +++..+|+|...
T Consensus       285 ~EfvsgsyDksIRIf~~~~~~SR---diYhtkRMq~V~~Vk~S~Dskyi~SG-----Sdd~nvRlWka~  345 (433)
T KOG0268|consen  285 QEFVSGSYDKSIRIFPVNHGHSR---DIYHTKRMQHVFCVKYSMDSKYIISG-----SDDGNVRLWKAK  345 (433)
T ss_pred             chhccccccceEEEeecCCCcch---hhhhHhhhheeeEEEEeccccEEEec-----CCCcceeeeecc
Confidence            999999999999 9999877532   222333344 7788896  4577776     667889999763

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.74  E-value=2.5e-17  Score=167.07  Aligned_cols=268  Identities=13%  Similarity=0.116  Sum_probs=196.8

Q ss_pred             CceEEEEEeCCcEEEEEccCeEEEeecCCcee--eEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459           21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKV--RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI   98 (696)
Q Consensus        21 ~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~--~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~   98 (696)
                      .+-.+.+|...+.+.+++.+.|+|||+.+++.  ++..+    ..+.....+..+...|||+.|+++....+|-|||+..
T Consensus       421 vVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqL----dcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAa  496 (705)
T KOG0639|consen  421 VVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQL----DCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAA  496 (705)
T ss_pred             EEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccc----cccCcccceeeeEecCCCceEEeccccceeeeeeccC
Confidence            45557789999999999999999999986632  22221    2232334456789999999999999999999999986


Q ss_pred             cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcc
Q 005459           99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV  178 (696)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~  178 (696)
                      ....+-.                   ...-.+..-...++++|.+..+.+++||.|.+|+...+....            
T Consensus       497 pTprika-------------------eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr------------  545 (705)
T KOG0639|consen  497 PTPRIKA-------------------ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR------------  545 (705)
T ss_pred             CCcchhh-------------------hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee------------
Confidence            5432211                   000001111123567788888999999999986544332211            


Q ss_pred             cccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecceecCCC-
Q 005459          179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSG-  257 (696)
Q Consensus       179 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~-  257 (696)
                                              .+.++...+.+          +.+++||..+-+++.|.+++-||...+..+..|. 
T Consensus       546 ------------------------qfqGhtDGasc----------Idis~dGtklWTGGlDntvRcWDlregrqlqqhdF  591 (705)
T KOG0639|consen  546 ------------------------QFQGHTDGASC----------IDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF  591 (705)
T ss_pred             ------------------------cccCCCCCcee----------EEecCCCceeecCCCccceeehhhhhhhhhhhhhh
Confidence                                    11122223334          4489999999999999999999999887765554 


Q ss_pred             -CeE-EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459          258 -DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS  335 (696)
Q Consensus       258 -~~v-~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~  335 (696)
                       .-| .+...|.+.++|+|.+++.|.|-....  .....+..        |..-|.++.|++-|+.+++.+.|+-+-.|.
T Consensus       592 ~SQIfSLg~cP~~dWlavGMens~vevlh~sk--p~kyqlhl--------heScVLSlKFa~cGkwfvStGkDnlLnawr  661 (705)
T KOG0639|consen  592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK--PEKYQLHL--------HESCVLSLKFAYCGKWFVSTGKDNLLNAWR  661 (705)
T ss_pred             hhhheecccCCCccceeeecccCcEEEEecCC--ccceeecc--------cccEEEEEEecccCceeeecCchhhhhhcc
Confidence             333 488999999999999999999988764  45566777        899999999999999999999999999999


Q ss_pred             ccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459          336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT  373 (696)
Q Consensus       336 ~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~  373 (696)
                      +.-+.-+...++  .++|.++.+|.|+    +++++|+
T Consensus       662 tPyGasiFqskE--~SsVlsCDIS~dd----kyIVTGS  693 (705)
T KOG0639|consen  662 TPYGASIFQSKE--SSSVLSCDISFDD----KYIVTGS  693 (705)
T ss_pred             Cccccceeeccc--cCcceeeeeccCc----eEEEecC
Confidence            876665555554  4678999888887    8888776

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=5.2e-16  Score=156.60  Aligned_cols=224  Identities=16%  Similarity=0.208  Sum_probs=149.8

Q ss_pred             EEeCCc-EEEEeeccCCceeeeeeeccee-----cCCC-CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459          226 LYSNGQ-LMSCSVSKKGLKLAEFIKIDKE-----LGSG-DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL  297 (696)
Q Consensus       226 ~s~dG~-~~~~~~~d~~~~~~~~~~~~~~-----~~~~-~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~  297 (696)
                      |.|+|. .+++++...-...||..+.+..     .++. ..+. ..+||++++||..+..|-|.+-...+ ++++.+++.
T Consensus       265 f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT-~eli~s~Ki  343 (514)
T KOG2055|consen  265 FAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT-KELITSFKI  343 (514)
T ss_pred             ecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh-hhhhheeee
Confidence            556666 4555555555567777655322     3444 3455 89999999999999999999999887 888888887


Q ss_pred             ccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---e
Q 005459          298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S  374 (696)
Q Consensus       298 ~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~  374 (696)
                               .|.|..++|+.||+.|.+.+.+|.|.+||+....+++.+...|.-.-++++.++++    .++++|+   .
T Consensus       344 ---------eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng----~ylA~GS~~Gi  410 (514)
T KOG2055|consen  344 ---------EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNG----SYLATGSDSGI  410 (514)
T ss_pred             ---------ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCC----ceEEeccCcce
Confidence                     78999999999999999999999999999999999999887544456778888888    8999998   4


Q ss_pred             eEEEcCCCc------eEEEEecCCcceE--EEEec-ceeeeeccC--CCCceeeeeeecCCeEEEEecCCCCcceeEEee
Q 005459          375 MMQWDEYGY------RLYAIEEGSSERV--LIFSF-GKCCLNRGV--SGMTYARQVIYGEDRLLVVQSEDTDELKILHLN  443 (696)
Q Consensus       375 ~~~W~~~~~------~l~~~~~~~~~~v--~~~~~-~~~~~s~~~--d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~  443 (696)
                      +-+++..+.      +.+.+...-...|  ++|+. ++.++.+|.  ...+++-.+  ....++  .            .
T Consensus       411 VNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv--PS~TVF--s------------N  474 (514)
T KOG2055|consen  411 VNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV--PSCTVF--S------------N  474 (514)
T ss_pred             EEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec--cceeee--c------------c
Confidence            444553321      1222221112334  33333 444443333  223332111  111000  0            0


Q ss_pred             cCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459          444 LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       444 ~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~  480 (696)
                      .|.. ...-+.|+|++|||.|-|+|+|-.+|.+ +|.+
T Consensus       475 fP~~-n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  475 FPTS-NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             CCCC-CCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence            1111 1112238999999999999999999999 9975

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.73  E-value=5.1e-16  Score=148.98  Aligned_cols=256  Identities=14%  Similarity=0.142  Sum_probs=162.4

Q ss_pred             EEEe-CCcEEEEeeccCCceeeeeeec-c----eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459          225 VLYS-NGQLMSCSVSKKGLKLAEFIKI-D----KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL  297 (696)
Q Consensus       225 ~~s~-dG~~~~~~~~d~~~~~~~~~~~-~----~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~  297 (696)
                      .|+| ...++++++-|+++|+|++... .    ....|..++- ++|+.||..+++|+.|+.+++||+.+ + ....+..
T Consensus        34 ~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S-~-Q~~~v~~  111 (347)
T KOG0647|consen   34 AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS-G-QVSQVAA  111 (347)
T ss_pred             EeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC-C-Ceeeeee
Confidence            3555 4455667788999999998763 1    1245777776 99999999999999999999999997 4 4555677


Q ss_pred             ccCCCCCCCCCCeEEEEECCCCC--eEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecc--e
Q 005459          298 YDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--T  373 (696)
Q Consensus       298 ~~~~~~~~h~g~V~~l~~spdg~--~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg--~  373 (696)
                              |.++|.++.|-+...  +|++|+.|+++|.||+.....+.++.-.  ..+.+...      .+..++-+  .
T Consensus       112 --------Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--eRvYa~Dv------~~pm~vVata~  175 (347)
T KOG0647|consen  112 --------HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--ERVYAADV------LYPMAVVATAE  175 (347)
T ss_pred             --------cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--ceeeehhc------cCceeEEEecC
Confidence                    999999999987665  9999999999999999988888877643  22333221      12222222  2


Q ss_pred             -eeEEEcCCCceEEEEecC-----CcceEEEEecceeeeeccCCCCceeeeeeec--CCeEEEEecCCCCcceeEEeecC
Q 005459          374 -SMMQWDEYGYRLYAIEEG-----SSERVLIFSFGKCCLNRGVSGMTYARQVIYG--EDRLLVVQSEDTDELKILHLNLP  445 (696)
Q Consensus       374 -~~~~W~~~~~~l~~~~~~-----~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~--~~~~~~~~~~~~~~~~w~~~~~~  445 (696)
                       .+.++++++.........     ....|.+|.-.+..+-|+-.|.+-+..+..+  .+...+-+         |.-+-+
T Consensus       176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC---------HR~~~~  246 (347)
T KOG0647|consen  176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC---------HRSTNS  246 (347)
T ss_pred             CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEE---------eccCCC
Confidence             677777755432211100     0111222222333355555555555444433  12111111         100000


Q ss_pred             eeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEE
Q 005459          446 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIV  510 (696)
Q Consensus       446 ~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv  510 (696)
                        ..+.-.+|.+++|.|.-..||++|.||+. .||-+.+ -|++..+.+.+.+.|..+--.+.+.+
T Consensus       247 --~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~s~~~~qpItcc~fn~~G~ifa  309 (347)
T KOG0647|consen  247 --VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKTSETHPQPITCCSFNRNGSIFA  309 (347)
T ss_pred             --CCCceEEecceEeecccceEEEecCCceEEEecchhh-hhhhccCcCCCccceeEecCCCCEEE
Confidence              01113468999999999999999999999 9998764 46666666666555444444444443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=5.7e-17  Score=163.94  Aligned_cols=264  Identities=13%  Similarity=0.109  Sum_probs=180.3

Q ss_pred             cEEEEE--ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCC
Q 005459           32 GLLLIA--SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQ  109 (696)
Q Consensus        32 ~lla~~--~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~  109 (696)
                      .+++++  +...|.+|... +..+..      ......|++.+++=+|+|.+|+.+|-.|.|.+|.+.++.......   
T Consensus        51 ~yllsaq~~rp~l~vw~i~-k~~~~~------q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~---  120 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEIL-KKDQVV------QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS---  120 (476)
T ss_pred             hheeeecccCccccccccC-chhhhh------hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH---
Confidence            455555  45579999985 333222      123346999999999999999999999999999999876422221   


Q ss_pred             CCCceeeeeeEEEeeeccccccceeEEEe--eeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCC
Q 005459          110 PSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPS  187 (696)
Q Consensus       110 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~  187 (696)
                                          .+--.|+|+  +.|+..++.|+.||.|..|............          .       
T Consensus       121 --------------------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~----------~-------  163 (476)
T KOG0646|consen  121 --------------------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDH----------S-------  163 (476)
T ss_pred             --------------------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCC----------C-------
Confidence                                222244554  4567889999999999886543211110000          0       


Q ss_pred             CCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEE
Q 005459          188 NGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASI  264 (696)
Q Consensus       188 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~  264 (696)
                                ......+.+|.-.|+++.-....        -...+++.+.|.++++||+..+..+   .......++++
T Consensus       164 ----------~~p~~~f~~HtlsITDl~ig~Gg--------~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~l  225 (476)
T KOG0646|consen  164 ----------VKPLHIFSDHTLSITDLQIGSGG--------TNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVAL  225 (476)
T ss_pred             ----------ccceeeeccCcceeEEEEecCCC--------ccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEE
Confidence                      00112345677789888732211        2235778899999999999887654   22233445999


Q ss_pred             cCCCcEEEEEecCCeEEEEEccCCC--ce-----eeEEeeccCCCCCCCCC--CeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459          265 APEQQILAVGTRRGVVELYDLAESA--SL-----IRTVSLYDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRGLTVWS  335 (696)
Q Consensus       265 sp~~~~la~g~~dg~v~vw~~~~~~--~~-----~~~~~~~~~~~~~~h~g--~V~~l~~spdg~~lasg~~Dg~v~vW~  335 (696)
                      .|-.+.+-+|+++|.|.+.++....  +.     .....+.+.....+|.+  +|+|++.|-||..|++|++||.|+|||
T Consensus       226 Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd  305 (476)
T KOG0646|consen  226 DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD  305 (476)
T ss_pred             cccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence            9999999999999999988875421  00     00011112222335988  999999999999999999999999999


Q ss_pred             ccCCeeEEEeecccccceecccccCC
Q 005459          336 VSGCRLMSTIRQISLSSISSPIVKPN  361 (696)
Q Consensus       336 ~~~~~~~~~l~~~~~~~v~~~~~sp~  361 (696)
                      +...++++++... .+.|+.+.+.|-
T Consensus       306 i~S~Q~iRtl~~~-kgpVtnL~i~~~  330 (476)
T KOG0646|consen  306 IYSKQCIRTLQTS-KGPVTNLQINPL  330 (476)
T ss_pred             cchHHHHHHHhhh-ccccceeEeecc
Confidence            9999999888753 566777777544

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=5.8e-18  Score=178.87  Aligned_cols=233  Identities=18%  Similarity=0.246  Sum_probs=193.0

Q ss_pred             CCceeeeeeecceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC
Q 005459          240 KGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD  318 (696)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd  318 (696)
                      ..+++|+....   ..|..++. +.+-..++.+++|+.|-.+-+|.+.. ...+..+.+        |.++|.+|.|+++
T Consensus        14 t~Lr~~~~~~~---~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k-p~~i~S~~~--------hespIeSl~f~~~   81 (825)
T KOG0267|consen   14 TKLRVWDTREF---VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK-PNAITSLTG--------HESPIESLTFDTS   81 (825)
T ss_pred             eccccccchhh---hhhhhhhceeeeeccceeeccCCCceeeccccccC-Cchhheeec--------cCCcceeeecCcc
Confidence            34556775433   35666654 55556789999999999999999877 444555777        9999999999999


Q ss_pred             CCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcce
Q 005459          319 NSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSER  395 (696)
Q Consensus       319 g~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~  395 (696)
                      ...|++|..||+|++||++.++.+++|.+| ...+.++.|+|.+    ++.++|+   ...+||.....+.....+|...
T Consensus        82 E~LlaagsasgtiK~wDleeAk~vrtLtgh-~~~~~sv~f~P~~----~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v  156 (825)
T KOG0267|consen   82 ERLLAAGSASGTIKVWDLEEAKIVRTLTGH-LLNITSVDFHPYG----EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV  156 (825)
T ss_pred             hhhhcccccCCceeeeehhhhhhhhhhhcc-ccCcceeeeccce----EEeccccccccceehhhhccCceeeecCCcce
Confidence            999999999999999999999999999999 7789999999999    8888888   7889999987888888887766


Q ss_pred             E--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC
Q 005459          396 V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL  472 (696)
Q Consensus       396 v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~  472 (696)
                      +  ..|+| ++.+++++.|.++++||+.+|+-                    ...|..|..+|.++.|.|..-.++.||.
T Consensus       157 v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~--------------------~~ef~~~e~~v~sle~hp~e~Lla~Gs~  216 (825)
T KOG0267|consen  157 VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL--------------------SKEFKSHEGKVQSLEFHPLEVLLAPGSS  216 (825)
T ss_pred             eEEEeecCCCceeeccCCcceeeeeccccccc--------------------ccccccccccccccccCchhhhhccCCC
Confidence            5  77788 88999999999999999988875                    6789999999999999999999999999


Q ss_pred             CccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEE
Q 005459          473 HGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVC  512 (696)
Q Consensus       473 dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~  512 (696)
                      |+++ +||+++  ..+.....+| .+.|++..+..+.-++.
T Consensus       217 d~tv~f~dlet--fe~I~s~~~~-~~~v~~~~fn~~~~~~~  254 (825)
T KOG0267|consen  217 DRTVRFWDLET--FEVISSGKPE-TDGVRSLAFNPDGKIVL  254 (825)
T ss_pred             Cceeeeeccce--eEEeeccCCc-cCCceeeeecCCceeee
Confidence            9999 999976  3344443344 33477888877766554

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=4.1e-18  Score=180.01  Aligned_cols=214  Identities=16%  Similarity=0.184  Sum_probs=181.9

Q ss_pred             EeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC
Q 005459          227 YSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY  302 (696)
Q Consensus       227 s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~  302 (696)
                      -..++.+++++.+..+.+|....+...   .+|+.+|. +.|+++..+||.|+.+|+|++||+.. +..++++.+     
T Consensus        37 ~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee-Ak~vrtLtg-----  110 (825)
T KOG0267|consen   37 RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE-AKIVRTLTG-----  110 (825)
T ss_pred             eccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh-hhhhhhhhc-----
Confidence            567888888888888888887665432   68999997 99999999999999999999999998 888899999     


Q ss_pred             CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEc
Q 005459          303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD  379 (696)
Q Consensus       303 ~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~  379 (696)
                         |...+.++.|+|-|.+.|+|+.|..+++||....-|.++.++| ...|..++|+|+|    ..+++|.   ++.+||
T Consensus       111 ---h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~-~~vv~~l~lsP~G----r~v~~g~ed~tvki~d  182 (825)
T KOG0267|consen  111 ---HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH-TRVVDVLRLSPDG----RWVASGGEDNTVKIWD  182 (825)
T ss_pred             ---cccCcceeeeccceEEeccccccccceehhhhccCceeeecCC-cceeEEEeecCCC----ceeeccCCcceeeeec
Confidence               9999999999999999999999999999999977789999986 7889999999999    8888887   899999


Q ss_pred             CCCceEEEEecCCcceEEEEec--ce-eeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceE
Q 005459          380 EYGYRLYAIEEGSSERVLIFSF--GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ  456 (696)
Q Consensus       380 ~~~~~l~~~~~~~~~~v~~~~~--~~-~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~  456 (696)
                      ...+++...+++|..++..++|  .+ .+++|+.|.++++|++.+-+-                    ..........|+
T Consensus       183 ~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~--------------------I~s~~~~~~~v~  242 (825)
T KOG0267|consen  183 LTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV--------------------ISSGKPETDGVR  242 (825)
T ss_pred             ccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE--------------------eeccCCccCCce
Confidence            9999999999999999866665  33 467899999999999764221                    111122255799


Q ss_pred             EEEEcCCCCEEEEEeCCc
Q 005459          457 HVAASKDGMFLAVAGLHG  474 (696)
Q Consensus       457 ~va~s~dG~~la~ag~dG  474 (696)
                      +.+|+|||+.+++|-...
T Consensus       243 ~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  243 SLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eeeecCCceeeecCchhh
Confidence            999999999999887654

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.72  E-value=1.6e-15  Score=144.83  Aligned_cols=222  Identities=16%  Similarity=0.217  Sum_probs=167.1

Q ss_pred             CCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCc-----ee-eEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEE
Q 005459          255 GSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESAS-----LI-RTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVG  325 (696)
Q Consensus       255 ~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~-----~~-~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg  325 (696)
                      -|.+.|. +.+.+ .|+++.+|+.||.|.|||++....     ++ +..-....+....|+-.|.++-|-| |.-.+.++
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            4677777 88877 699999999999999999976220     11 1111111233446899999999999 77788899


Q ss_pred             EcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-
Q 005459          326 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-  401 (696)
Q Consensus       326 ~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-  401 (696)
                      +-|++++|||+.+-+..-.++..  ..|.+-+++|-. .+...++.|.   ++++=|...+..-.++.||.+.|++++. 
T Consensus       121 SFDhtlKVWDtnTlQ~a~~F~me--~~VYshamSp~a-~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws  197 (397)
T KOG4283|consen  121 SFDHTLKVWDTNTLQEAVDFKME--GKVYSHAMSPMA-MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS  197 (397)
T ss_pred             cccceEEEeecccceeeEEeecC--ceeehhhcChhh-hcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence            99999999999998877777653  457777777763 2334566665   8889999999999999999999966655 


Q ss_pred             ---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-E
Q 005459          402 ---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-L  477 (696)
Q Consensus       402 ---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~  477 (696)
                         .=.++|++.|+.+++||+......+.+..-+..     ...++.++-.+|++.+..+||+.||+++++.|.|..+ +
T Consensus       198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-----k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~  272 (397)
T KOG4283|consen  198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-----KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV  272 (397)
T ss_pred             cCceeEEEecCCCceEEEEEeecccceeEEeecccC-----ccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence               234789999999999999877554333322221     0111223445899999999999999999999999999 9


Q ss_pred             EEccCCc
Q 005459          478 YDIRQKK  484 (696)
Q Consensus       478 w~~~sg~  484 (696)
                      |+..+|+
T Consensus       273 wn~~~G~  279 (397)
T KOG4283|consen  273 WNMESGR  279 (397)
T ss_pred             eecccCc
Confidence            9999987

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.71  E-value=1.7e-16  Score=169.23  Aligned_cols=197  Identities=14%  Similarity=0.189  Sum_probs=148.5

Q ss_pred             EEEcC-CCcEEEEEecCCeEEEEEccCCC--ceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEcc
Q 005459          262 ASIAP-EQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVS  337 (696)
Q Consensus       262 v~~sp-~~~~la~g~~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~  337 (696)
                      |.|+. +.++||+++.+|.|.+||+....  ..+..+..        |+..|.++.|++ ..++|++|+.||+|++||+.
T Consensus        93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E--------H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR  164 (839)
T KOG0269|consen   93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE--------HERSANKLDFHSTEPNILISGSQDGTVKCWDLR  164 (839)
T ss_pred             cccccchhhhheeecCCCcEEEEecCccccchhhhHhhh--------hccceeeeeeccCCccEEEecCCCceEEEEeee
Confidence            66664 57899999999999999998632  23334555        999999999998 67899999999999999998


Q ss_pred             CCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceee
Q 005459          338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYAR  417 (696)
Q Consensus       338 ~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w  417 (696)
                      ...-..++.+. ..+|..++|+|..                                       +...+++...|.+++|
T Consensus       165 ~~~S~~t~~~n-SESiRDV~fsp~~---------------------------------------~~~F~s~~dsG~lqlW  204 (839)
T KOG0269|consen  165 SKKSKSTFRSN-SESIRDVKFSPGY---------------------------------------GNKFASIHDSGYLQLW  204 (839)
T ss_pred             ccccccccccc-chhhhceeeccCC---------------------------------------CceEEEecCCceEEEe
Confidence            87766666654 4445555555542                                       2334566778899999


Q ss_pred             eeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceee
Q 005459          418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQK  496 (696)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~  496 (696)
                      |+.+.+.                   .-..+.+|++||.++.|+|++.+||+||+|+.+ +|++.+.+-+.  ...-+.-
T Consensus       205 DlRqp~r-------------------~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~--~~tInTi  263 (839)
T KOG0269|consen  205 DLRQPDR-------------------CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP--KHTINTI  263 (839)
T ss_pred             eccCchh-------------------HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc--eeEEeec
Confidence            9988765                   344678999999999999999999999999999 99999876432  1122233


Q ss_pred             eEEEeEeeeCc--EEEEEEeecCCCeEEEEEeeCC
Q 005459          497 IQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       497 ~~v~~~~w~~~--~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      ..|..+.|-+.  +.++.|..  ..+++|++|+..
T Consensus       264 apv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvr  296 (839)
T KOG0269|consen  264 APVGRVKWRPARSYHLATCSM--VVDTSVHVWDVR  296 (839)
T ss_pred             ceeeeeeeccCccchhhhhhc--cccceEEEEeec
Confidence            33667999643  44555443  456899999976

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.4e-15  Score=153.62  Aligned_cols=268  Identities=18%  Similarity=0.268  Sum_probs=183.6

Q ss_pred             CCceEEEEEeCCcEEEEEc-cCeEEEeecCCcee-e-EEEeecChHHHhhcccccEEEEcCCCc-EEEEEecCcEEEEEE
Q 005459           20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKV-R-LGKYKRDSESVQREGENLQAVWSPDTK-LIAVVTSSLYLHIFK   95 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~-~-l~~~~r~~~sl~~~G~~~~v~wsPDg~-~lav~t~dg~l~l~~   95 (696)
                      +....|.|.|...+|.+++ |++++|+.++ ..+ + +....     + +.-++.+++|.|+|+ .+++++...|+..||
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvD-Gk~N~~lqS~~-----l-~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD  286 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVD-GKVNPKLQSIH-----L-EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD  286 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEec-CccChhheeee-----e-ccCccceeeecCCCceEEEecccceEEEEee
Confidence            4566699999999888774 8899999986 221 1 11111     1 124677999999999 899999999999999


Q ss_pred             EEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCcc-ccceeeccCCC
Q 005459           96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEF-YGAFELVHSSN  174 (696)
Q Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~-~~~~~~~~~p~  174 (696)
                      +.+.+....   +++-+.         +      .....-..+++++..|++.+.+|.|+++.-.... .....      
T Consensus       287 le~ak~~k~---~~~~g~---------e------~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K------  342 (514)
T KOG2055|consen  287 LETAKVTKL---KPPYGV---------E------EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK------  342 (514)
T ss_pred             ccccccccc---cCCCCc---------c------cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee------
Confidence            986653211   111100         0      0011123456788899999999999987533211 11111      


Q ss_pred             CCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-
Q 005459          175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-  253 (696)
Q Consensus       175 ~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-  253 (696)
                                                      -.+.+.++          .|++||+.++..+.++.+.+||+....+. 
T Consensus       343 --------------------------------ieG~v~~~----------~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~  380 (514)
T KOG2055|consen  343 --------------------------------IEGVVSDF----------TFSSDSKELLASGGTGEVYVWNLRQNSCLH  380 (514)
T ss_pred             --------------------------------eccEEeeE----------EEecCCcEEEEEcCCceEEEEecCCcceEE
Confidence                                            12234444          37899999999999999999998876543 


Q ss_pred             ----cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCC-----CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE
Q 005459          254 ----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES-----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV  324 (696)
Q Consensus       254 ----~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~-----~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las  324 (696)
                          .|....+.++.|+++++||+|+..|.|-|||.++-     .+++.++..        -+-.|++|.|+||++.||.
T Consensus       381 rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN--------Ltt~Itsl~Fn~d~qiLAi  452 (514)
T KOG2055|consen  381 RFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN--------LTTAITSLQFNHDAQILAI  452 (514)
T ss_pred             EEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh--------hheeeeeeeeCcchhhhhh
Confidence                23233445888999999999999999999996541     233444433        4667999999999999988


Q ss_pred             EEc--CCcEEEEEccCCeeEEEeecc--cccceecccccCCCCCCccceecc
Q 005459          325 GWK--SRGLTVWSVSGCRLMSTIRQI--SLSSISSPIVKPNQDCKYEPLMSG  372 (696)
Q Consensus       325 g~~--Dg~v~vW~~~~~~~~~~l~~~--~~~~v~~~~~sp~~~~~~~~l~sg  372 (696)
                      ++.  +..+|+-.+..+.....+...  ....|+|++|+|.+    -+++-|
T Consensus       453 aS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s----G~lAvG  500 (514)
T KOG2055|consen  453 ASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS----GYLAVG  500 (514)
T ss_pred             hhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC----ceEEee
Confidence            765  578999988887766655532  13458899999987    555544

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.69  E-value=2.2e-14  Score=148.90  Aligned_cols=263  Identities=12%  Similarity=0.119  Sum_probs=168.9

Q ss_pred             CcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEE-EEEecCCeEEEEEccCCCceeeEEeeccCCCCCC
Q 005459          230 GQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD  305 (696)
Q Consensus       230 G~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~l-a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~  305 (696)
                      ++++++++.|+.+++||..+++..   ..+.....++|+|+++.+ ++++.++.|++||..+ ++..+.+..        
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~--------   71 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPS--------   71 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccC--------
Confidence            356677777888888887655432   334444459999999876 6778899999999987 666555544        


Q ss_pred             CCCCeEEEEECCCCCeEEEE-EcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce----eeEEEcC
Q 005459          306 DTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDE  380 (696)
Q Consensus       306 h~g~V~~l~~spdg~~lasg-~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~  380 (696)
                      +.. +..++|+|||+.++++ +.|+.+++||+.+.+.+..+..+  ..+.+++++|++    ..++.+.    .+..|+.
T Consensus        72 ~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg----~~l~~~~~~~~~~~~~d~  144 (300)
T TIGR03866        72 GPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG--VEPEGMAVSPDG----KIVVNTSETTNMAHFIDT  144 (300)
T ss_pred             CCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC--CCcceEEECCCC----CEEEEEecCCCeEEEEeC
Confidence            333 5678999999977655 56899999999998888777643  235778999998    6666544    3556798


Q ss_pred             CCceEEEEec-CCcceEEEEec-ceee-eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEE
Q 005459          381 YGYRLYAIEE-GSSERVLIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH  457 (696)
Q Consensus       381 ~~~~l~~~~~-~~~~~v~~~~~-~~~~-~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~  457 (696)
                      +++++..... ++...-..+++ ++.+ +++..++.+++|++..++....+..            ..+..... ......
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~------------~~~~~~~~-~~~~~~  211 (300)
T TIGR03866       145 KTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITF------------EIPGVHPE-AVQPVG  211 (300)
T ss_pred             CCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeee------------cccccccc-cCCccc
Confidence            8877665432 22223356666 6666 4556789999999876543100000            00000000 011235


Q ss_pred             EEEcCCCCEEEEE-eCCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459          458 VAASKDGMFLAVA-GLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       458 va~s~dG~~la~a-g~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      ++|+|||++++++ +.++.+ +||.++++-...  ...  .-.+.++.|.  ++.|++++    ..+.+|++|+.+
T Consensus       212 i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~--~~~~~~~~~~~~g~~l~~~~----~~~~~i~v~d~~  279 (300)
T TIGR03866       212 IKLTKDGKTAFVALGPANRVAVVDAKTYEVLDY--LLV--GQRVWQLAFTPDEKYLLTTN----GVSNDVSVIDVA  279 (300)
T ss_pred             eEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE--EEe--CCCcceEEECCCCCEEEEEc----CCCCeEEEEECC
Confidence            8899999986554 445567 999987653221  111  1125578886  44666552    234689999886

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.69  E-value=2.4e-14  Score=148.66  Aligned_cols=224  Identities=13%  Similarity=0.162  Sum_probs=154.1

Q ss_pred             EEEEeCCcEE-EEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEE-ecCCeEEEEEccCCCceeeEEeec
Q 005459          224 FVLYSNGQLM-SCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLY  298 (696)
Q Consensus       224 ~~~s~dG~~~-~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g-~~dg~v~vw~~~~~~~~~~~~~~~  298 (696)
                      +.+++||+.+ +++..++.+.+|+...++..   ..+.....++++|+++.++++ ..|+.+++||+.+ .+.+..+.. 
T Consensus        36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~~-  113 (300)
T TIGR03866        36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAEIPV-  113 (300)
T ss_pred             eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeEeeC-
Confidence            4578899865 45567788999998765432   334444558999999977655 5689999999987 555555543 


Q ss_pred             cCCCCCCCCCCeEEEEECCCCCeEEEEEcCC-cEEEEEccCCeeEEEeecccccceecccccCCCCCCccce-ecc---e
Q 005459          299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSG---T  373 (696)
Q Consensus       299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg-~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l-~sg---~  373 (696)
                              ...+.+++|+|||+.++++..++ .+.+||..++.....+...  ....+++|+|++    +.+ +++   .
T Consensus       114 --------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~~~  179 (300)
T TIGR03866       114 --------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD--QRPRFAEFTADG----KELWVSSEIGG  179 (300)
T ss_pred             --------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC--CCccEEEECCCC----CEEEEEcCCCC
Confidence                    23468899999999999998875 4677899888776655432  235668899998    655 333   2


Q ss_pred             eeEEEcCCCceEEEEecCC-----cceE----EEEec-ceee-eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEe
Q 005459          374 SMMQWDEYGYRLYAIEEGS-----SERV----LIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL  442 (696)
Q Consensus       374 ~~~~W~~~~~~l~~~~~~~-----~~~v----~~~~~-~~~~-~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~  442 (696)
                      .+.+|+.++++++.....+     ...+    +.+++ ++.+ ++.+.++.+.+|++..++..                 
T Consensus       180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~-----------------  242 (300)
T TIGR03866       180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL-----------------  242 (300)
T ss_pred             EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-----------------
Confidence            7899999988776544311     1111    44566 5553 44455667888886543321                 


Q ss_pred             ecCeeeecCCCceEEEEEcCCCCEEEEE-eCCccE-EEEccCCc
Q 005459          443 NLPVSYISQNWPVQHVAASKDGMFLAVA-GLHGLI-LYDIRQKK  484 (696)
Q Consensus       443 ~~~~~~~~~~~~I~~va~s~dG~~la~a-g~dG~i-~w~~~sg~  484 (696)
                          ....+...+.+++|+|||++|+++ +.+|.+ +||+.+++
T Consensus       243 ----~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       243 ----DYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             ----EEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence                111223368899999999999886 568999 99999876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=6.2e-15  Score=142.24  Aligned_cols=264  Identities=13%  Similarity=0.149  Sum_probs=183.7

Q ss_pred             ceEEEEEeCCc-EEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecC
Q 005459           22 QQIIYFKVNNG-LLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE  100 (696)
Q Consensus        22 ~~~v~fs~dg~-lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~  100 (696)
                      ..-+.|+|.+. |||+.-|++++++++. .....       ..+.+.+++.+.+|.++ ..+++++.||.|+.||+.+++
T Consensus        16 IS~v~f~~~~~~LLvssWDgslrlYdv~-~~~l~-------~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen   16 ISSVKFSPSSSDLLVSSWDGSLRLYDVP-ANSLK-------LKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             eeeEEEcCcCCcEEEEeccCcEEEEecc-chhhh-------hheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc
Confidence            34488998865 6666689999999996 21111       22445688999999974 678999999999999998765


Q ss_pred             cccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeC--CCeEEEEecCCcEEEEecCCccccceeeccCCCCCcc
Q 005459          101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV  178 (696)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~--~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~  178 (696)
                      ...                        +..++..+.|+...  .+.+++|+.|+.|..  ||.-.....           
T Consensus        87 ~~~------------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~--wD~R~~~~~-----------  129 (323)
T KOG1036|consen   87 EDQ------------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKF--WDPRNKVVV-----------  129 (323)
T ss_pred             cee------------------------eccCCCceEEEEeeccCCeEEEcccCccEEE--Eeccccccc-----------
Confidence            321                        23344566666544  678999999999998  554321000           


Q ss_pred             cccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-----
Q 005459          179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----  253 (696)
Q Consensus       179 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-----  253 (696)
                                              ........|.+|            +-.|..++++..+..+..||+.+....     
T Consensus       130 ------------------------~~~d~~kkVy~~------------~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~re  173 (323)
T KOG1036|consen  130 ------------------------GTFDQGKKVYCM------------DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRE  173 (323)
T ss_pred             ------------------------cccccCceEEEE------------eccCCEEEEeecCceEEEEEcccccchhhhcc
Confidence                                    000111245443            456888888888999999998764321     


Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC---ceeeEEeeccCCC-CCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA---SLIRTVSLYDWGY-SMDDTGPVSCIAWTPDNSAFAVGWKS  328 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~---~~~~~~~~~~~~~-~~~h~g~V~~l~~spdg~~lasg~~D  328 (696)
                      ..-.-.++ ++..|++.-.|+++-||.|.|=.+++..   +....++.+..-. ..+---||++|+|+|--..||||+.|
T Consensus       174 S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD  253 (323)
T KOG1036|consen  174 SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD  253 (323)
T ss_pred             ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC
Confidence            11223344 8999999999999999999887776621   2233444411100 00012379999999998999999999


Q ss_pred             CcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecc
Q 005459          329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG  372 (696)
Q Consensus       329 g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg  372 (696)
                      |-|.+||.+.++.++.|... ..+|.+++|+-++    ..++.+
T Consensus       254 G~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG----~~LAia  292 (323)
T KOG1036|consen  254 GIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMDG----SLLAIA  292 (323)
T ss_pred             ceEEEccCcchhhhhhccCC-CCceEEEEeccCC----CeEEEE
Confidence            99999999999988888877 6679999999998    666644

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=2.5e-15  Score=152.21  Aligned_cols=228  Identities=16%  Similarity=0.216  Sum_probs=167.4

Q ss_pred             ccCCceeeeeeecceec----CCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEE
Q 005459          238 SKKGLKLAEFIKIDKEL----GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI  313 (696)
Q Consensus       238 ~d~~~~~~~~~~~~~~~----~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l  313 (696)
                      ....+.+|.........    -.....|++-+|+|.+|+.|+..|.+.+|.+.+ +.++..+..        |-.+|+|+
T Consensus        59 ~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~a--------HYQ~ITcL  129 (476)
T KOG0646|consen   59 KRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVLSA--------HYQSITCL  129 (476)
T ss_pred             cCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHHHh--------hccceeEE
Confidence            34456677765443221    112234588999999999999999999999999 888888888        99999999


Q ss_pred             EECCCCCeEEEEEcCCcEEEEEcc---------CCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCC
Q 005459          314 AWTPDNSAFAVGWKSRGLTVWSVS---------GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY  381 (696)
Q Consensus       314 ~~spdg~~lasg~~Dg~v~vW~~~---------~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~  381 (696)
                      .|+-||.+|++|+.||.|.+|++.         .-..++.+.+| .-+|+.+...+-+  ....+.|.+   ++++|++.
T Consensus       130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H-tlsITDl~ig~Gg--~~~rl~TaS~D~t~k~wdlS  206 (476)
T KOG0646|consen  130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH-TLSITDLQIGSGG--TNARLYTASEDRTIKLWDLS  206 (476)
T ss_pred             EEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC-cceeEEEEecCCC--ccceEEEecCCceEEEEEec
Confidence            999999999999999999999873         33467777777 5668888776654  224555655   99999999


Q ss_pred             CceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCC-eE-EEEecCCCCcceeEEeecCeeeecCCC--c
Q 005459          382 GYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGED-RL-LVVQSEDTDELKILHLNLPVSYISQNW--P  454 (696)
Q Consensus       382 ~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~-~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~--~  454 (696)
                      .+.++....- ...+  +++++ .+.+..|+.+|.+.+-++.+... +. ...++.+     -+.. -...+.+|..  +
T Consensus       207 ~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~-----~~~t-~~~~~~Gh~~~~~  279 (476)
T KOG0646|consen  207 LGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRH-----EENT-QINVLVGHENESA  279 (476)
T ss_pred             cceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccc-----cccc-eeeeeccccCCcc
Confidence            9998887643 2233  77788 66777888888876655443321 00 0000000     0011 1235678887  9


Q ss_pred             eEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       455 I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                      |.|+++|-||..|++|+.||.+ +||+.+++
T Consensus       280 ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  280 ITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             eeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence            9999999999999999999999 99999876

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=2e-14  Score=138.82  Aligned_cols=271  Identities=15%  Similarity=0.129  Sum_probs=177.4

Q ss_pred             ccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE-EeeeCCCeEE
Q 005459           68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS-NIVSDNKHML  146 (696)
Q Consensus        68 G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~-~~~~~~~~ll  146 (696)
                      ..+.++.|+|.++.|++++-||+|++|++.....++..                 .       +..++. |-..+...++
T Consensus        14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-----------------~-------~~~plL~c~F~d~~~~~   69 (323)
T KOG1036|consen   14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-----------------K-------HGAPLLDCAFADESTIV   69 (323)
T ss_pred             hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-----------------e-------cCCceeeeeccCCceEE
Confidence            45678999999999999999999999999754321110                 1       111222 2233457899


Q ss_pred             EEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEE
Q 005459          147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL  226 (696)
Q Consensus       147 v~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  226 (696)
                      +|+-||.|++++.+.....                                     .+..|...|.+|+|.+.       
T Consensus        70 ~G~~dg~vr~~Dln~~~~~-------------------------------------~igth~~~i~ci~~~~~-------  105 (323)
T KOG1036|consen   70 TGGLDGQVRRYDLNTGNED-------------------------------------QIGTHDEGIRCIEYSYE-------  105 (323)
T ss_pred             EeccCceEEEEEecCCcce-------------------------------------eeccCCCceEEEEeecc-------
Confidence            9999999999877643221                                     23346677899886542       


Q ss_pred             EeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCC
Q 005459          227 YSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM  304 (696)
Q Consensus       227 s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~  304 (696)
                         -..+++++-|+++++||.......  ....+.|. +.+-.++.|++|+.|..|.+||+++..... +.....     
T Consensus       106 ---~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy-~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~-q~reS~-----  175 (323)
T KOG1036|consen  106 ---VGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVY-CMDVSGNRLVVGTSDRKVLIYDLRNLDEPF-QRRESS-----  175 (323)
T ss_pred             ---CCeEEEcccCccEEEEeccccccccccccCceEE-EEeccCCEEEEeecCceEEEEEcccccchh-hhcccc-----
Confidence               334667788999999998753222  12223332 345568899999999999999998733322 111111     


Q ss_pred             CCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeE----EEeecccccceecccccCCCCCCccceecceeeEEEcC
Q 005459          305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM----STIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDE  380 (696)
Q Consensus       305 ~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~----~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~  380 (696)
                       -+-.++|+++-|++.-.|+++-||.|.+=.+......    ..++-|           +..                 .
T Consensus       176 -lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH-----------r~~-----------------~  226 (323)
T KOG1036|consen  176 -LKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH-----------RLS-----------------E  226 (323)
T ss_pred             -ceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEee-----------ecc-----------------c
Confidence             2456999999999999999999999887555443111    111111           000                 0


Q ss_pred             CCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEE
Q 005459          381 YGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH  457 (696)
Q Consensus       381 ~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~  457 (696)
                      .+.+++.       +|  ++|++ -+.++||+.||.+.+|++...+.                    ...+..-...|-+
T Consensus       227 ~~~~~~y-------PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr--------------------l~q~~~~~~SI~s  279 (323)
T KOG1036|consen  227 KDTEIIY-------PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR--------------------LKQLAKYETSISS  279 (323)
T ss_pred             CCceEEE-------EeceeEeccccceEEecCCCceEEEccCcchhh--------------------hhhccCCCCceEE
Confidence            0111111       23  45555 67799999999999999755433                    2223333446999


Q ss_pred             EEEcCCCCEEEEEeC
Q 005459          458 VAASKDGMFLAVAGL  472 (696)
Q Consensus       458 va~s~dG~~la~ag~  472 (696)
                      ++|+.||..||+|+.
T Consensus       280 lsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  280 LSFSMDGSLLAIASS  294 (323)
T ss_pred             EEeccCCCeEEEEec
Confidence            999999999999985

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.67  E-value=1.1e-14  Score=141.37  Aligned_cols=220  Identities=12%  Similarity=0.177  Sum_probs=156.6

Q ss_pred             EEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCC
Q 005459          232 LMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD  306 (696)
Q Consensus       232 ~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h  306 (696)
                      +++.++..|.|++.|....+.   +.+|..++. +.+.|+ -+++.+|+.|.+||+|++++ ..++..+-+..     +|
T Consensus       107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~-~~Cv~VfGG~e-----gH  180 (385)
T KOG1034|consen  107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT-DVCVAVFGGVE-----GH  180 (385)
T ss_pred             eEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC-CeEEEEecccc-----cc
Confidence            455556677888988877654   378999999 999996 57999999999999999998 78888776633     59


Q ss_pred             CCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEe---------------------------ecccccceeccccc
Q 005459          307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI---------------------------RQISLSSISSPIVK  359 (696)
Q Consensus       307 ~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l---------------------------~~~~~~~v~~~~~s  359 (696)
                      .+.|.++.|++||.+|+|++.|..+++|++...+....+                           ...|.+.|.++.|-
T Consensus       181 rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~  260 (385)
T KOG1034|consen  181 RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF  260 (385)
T ss_pred             cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence            999999999999999999999999999998633211111                           11113344444442


Q ss_pred             CCCCCCccceecce---eeEEEcCCCce--------------EEEEecCCcceE----EEEec-ceeeeeccCCCCceee
Q 005459          360 PNQDCKYEPLMSGT---SMMQWDEYGYR--------------LYAIEEGSSERV----LIFSF-GKCCLNRGVSGMTYAR  417 (696)
Q Consensus       360 p~~~~~~~~l~sg~---~~~~W~~~~~~--------------l~~~~~~~~~~v----~~~~~-~~~~~s~~~d~~~~~w  417 (696)
                      -      ++++|-+   .+..|-++..+              .+..+.-....+    +++++ .+.++.++..|.+.+|
T Consensus       261 g------d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw  334 (385)
T KOG1034|consen  261 G------DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW  334 (385)
T ss_pred             h------hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence            2      3444433   78889883211              111111122223    33334 8899999999999999


Q ss_pred             eeeecCCeEEEEecCCCCcceeEEeecCeeeec--CCCceEEEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459          418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS--QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR  481 (696)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~  481 (696)
                      ++...+...                  -.++..  ....||..+||.||..|+....||++ -||..
T Consensus       335 dL~~~ep~~------------------~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  335 DLDNNEPPK------------------CTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ECCCCCCcc------------------CceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            987766510                  112221  24579999999999999999999999 99864

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.66  E-value=3.4e-15  Score=151.00  Aligned_cols=243  Identities=13%  Similarity=0.124  Sum_probs=174.7

Q ss_pred             cCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCCcee---------eEEeeccCCCCCCCCCCeEEEEECCC-CCe
Q 005459          254 LGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLI---------RTVSLYDWGYSMDDTGPVSCIAWTPD-NSA  321 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~---------~~~~~~~~~~~~~h~g~V~~l~~spd-g~~  321 (696)
                      ..|.+-|+ +..-|+ -.++|+++.++.|.|||........         .++.+        |++.=..|+|++. .-.
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~g--------H~~eg~glsWn~~~~g~  192 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKG--------HEKEGYGLSWNRQQEGT  192 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEe--------eccccccccccccccee
Confidence            35677777 888885 5678889999999999987633222         15666        8887888999994 448


Q ss_pred             EEEEEcCCcEEEEEccCCe-------eEEEeecccccceecccccCCCCCCccceecce---eeEEEcCC--CceEEEEe
Q 005459          322 FAVGWKSRGLTVWSVSGCR-------LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY--GYRLYAIE  389 (696)
Q Consensus       322 lasg~~Dg~v~vW~~~~~~-------~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~--~~~l~~~~  389 (696)
                      |++|+.|++|++||+....       ....+.+| .+.|..++|+|..+   ..+.+.+   ..++||.+  +.+.-...
T Consensus       193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h-~~~VeDV~~h~~h~---~lF~sv~dd~~L~iwD~R~~~~~~~~~~  268 (422)
T KOG0264|consen  193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGH-EDVVEDVAWHPLHE---DLFGSVGDDGKLMIWDTRSNTSKPSHSV  268 (422)
T ss_pred             EeeccCCCcEEEEeccccccCCccccceEEeecC-Ccceehhhccccch---hhheeecCCCeEEEEEcCCCCCCCcccc
Confidence            8999999999999995432       23455666 78899999999862   2333322   89999999  56666677


Q ss_pred             cCCcceEEEEec----ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC-
Q 005459          390 EGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-  464 (696)
Q Consensus       390 ~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG-  464 (696)
                      .+|...|.++.|    .-.++|++.|+++.+||+..-..                   .+.++.+|...|..|.|||+- 
T Consensus       269 ~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-------------------~lh~~e~H~dev~~V~WSPh~e  329 (422)
T KOG0264|consen  269 KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-------------------PLHTFEGHEDEVFQVEWSPHNE  329 (422)
T ss_pred             cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-------------------CceeccCCCcceEEEEeCCCCC
Confidence            789999966555    66789999999999999987766                   367889999999999999976 


Q ss_pred             CEEEEEeCCccE-EEEccCCceEe---c-CCccceeee-------EEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC
Q 005459          465 MFLAVAGLHGLI-LYDIRQKKWRV---F-GDITQEQKI-------QSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       465 ~~la~ag~dG~i-~w~~~sg~w~~---f-~~~~~e~~~-------~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      ..||++|.|+.+ +||+..=--+.   . .+-..|--|       .|..+.|.++.-=+.|++  +++..|++|.-.
T Consensus       330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sv--aeDN~LqIW~~s  404 (422)
T KOG0264|consen  330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASV--AEDNILQIWQMA  404 (422)
T ss_pred             ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEe--cCCceEEEeecc
Confidence            478999999999 99985411010   0 000011112       255688986543222223  445789999653

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.66  E-value=8.9e-15  Score=139.77  Aligned_cols=292  Identities=16%  Similarity=0.186  Sum_probs=179.1

Q ss_pred             cceeEEEeeeC---CCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCC
Q 005459          131 KGLSVSNIVSD---NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI  207 (696)
Q Consensus       131 ~~~~v~~~~~~---~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~  207 (696)
                      +.++|.++.-+   +.+|+.|..||.|.+++.......+...  .-+...++  +                 .+..-..|
T Consensus        42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~--li~k~~c~--v-----------------~~~h~~~H  100 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASG--LIAKHKCI--V-----------------AKQHENGH  100 (397)
T ss_pred             CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcc--ceeheeee--c-----------------cccCCccc
Confidence            34566666544   5789999999999987655332111100  00000000  0                 00112345


Q ss_pred             cccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEE-EEEcC---CCcEEEEEecCCeEE
Q 005459          208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAP---EQQILAVGTRRGVVE  281 (696)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~-v~~sp---~~~~la~g~~dg~v~  281 (696)
                      +-.|.++.|.|         -|--.+.+++-|.++++||..+.+..  ..-++-|. -++||   ...+||+|..|-.|+
T Consensus       101 ky~iss~~WyP---------~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~Vr  171 (397)
T KOG4283|consen  101 KYAISSAIWYP---------IDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVR  171 (397)
T ss_pred             eeeeeeeEEee---------ecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEE
Confidence            55566554333         24445566678999999998876543  12234455 67777   356999999999999


Q ss_pred             EEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEEcCCcEEEEEccCC-eeEEEeeccc----------
Q 005459          282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGC-RLMSTIRQIS----------  349 (696)
Q Consensus       282 vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~~Dg~v~vW~~~~~-~~~~~l~~~~----------  349 (696)
                      +.|+.. +...+++.+        |++.|.++.|||... .||+|+.||.|++||+... -++.++..|.          
T Consensus       172 LCDi~S-Gs~sH~LsG--------Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n  242 (397)
T KOG4283|consen  172 LCDIAS-GSFSHTLSG--------HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTN  242 (397)
T ss_pred             EEeccC-Ccceeeecc--------ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccc
Confidence            999998 899999999        999999999999655 7899999999999999654 3455555442          


Q ss_pred             ---ccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecC---CcceEEEEecceeeeeccCCCCceeeeee
Q 005459          350 ---LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG---SSERVLIFSFGKCCLNRGVSGMTYARQVI  420 (696)
Q Consensus       350 ---~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~---~~~~v~~~~~~~~~~s~~~d~~~~~w~~~  420 (696)
                         .+.|+.++|..++    ..+++..   .++.|+.+.++--....+   |..+. .+.+  . +. +.|..+  ..+.
T Consensus       243 ~ah~gkvngla~tSd~----~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~-~~~~--~-~~-~~~s~v--fv~~  311 (397)
T KOG4283|consen  243 TAHYGKVNGLAWTSDA----RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT-SFAV--H-IQ-SMDSDV--FVLF  311 (397)
T ss_pred             ccccceeeeeeecccc----hhhhhccCccceEEeecccCcccccccccccccccc-cceE--E-Ee-ecccce--EEEE
Confidence               3457777887777    5555443   788898877653222111   11111 0000  0 11 111111  1111


Q ss_pred             ecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459          421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~  480 (696)
                      ..++.++++...+-.        ....+..|-..|.+.++-||=+...+|..||.+ .|..
T Consensus       312 p~~~~lall~~~sgs--------~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  312 PNDGSLALLNLLEGS--------FVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ecCCeEEEEEccCce--------EEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence            111222222211110        123445676779999999999999999999999 9977

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.65  E-value=2.2e-15  Score=156.77  Aligned_cols=234  Identities=21%  Similarity=0.306  Sum_probs=160.0

Q ss_pred             CCcEEEE--EecCCeEEEEEccCCCce----eeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCC
Q 005459          267 EQQILAV--GTRRGVVELYDLAESASL----IRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC  339 (696)
Q Consensus       267 ~~~~la~--g~~dg~v~vw~~~~~~~~----~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~  339 (696)
                      +...+|+  .+..|.|-||+++..+++    +..+.         ....|+++.|.| |...||++.+||.|++|.+..+
T Consensus       590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~---------Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~  660 (1012)
T KOG1445|consen  590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF---------NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN  660 (1012)
T ss_pred             ccceEEEEecCCCceEEEEEcCCCCCCCcccccccc---------cCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence            3445554  566799999999886543    22222         245699999999 9999999999999999998755


Q ss_pred             eeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEE--EEec--ceeeeeccCCCCce
Q 005459          340 RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVL--IFSF--GKCCLNRGVSGMTY  415 (696)
Q Consensus       340 ~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~--~~~~--~~~~~s~~~d~~~~  415 (696)
                      -+-                        +...             ..-..+..|.+.|.  .|++  ...++++++|.+++
T Consensus       661 gl~------------------------e~~~-------------tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~  703 (1012)
T KOG1445|consen  661 GLP------------------------ENEM-------------TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIE  703 (1012)
T ss_pred             CCC------------------------cccC-------------CcceeeecccceEEEEEecchhhhHhhhhhccceee
Confidence            311                        1111             01112235666774  4444  67789999999999


Q ss_pred             eeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccce
Q 005459          416 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQE  494 (696)
Q Consensus       416 ~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e  494 (696)
                      +||+..+..                    -..+.+|++.|..+||||||+.+|+.+.||.+ +|+..++.-.++     |
T Consensus       704 lWDl~~~~~--------------------~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~-----E  758 (1012)
T KOG1445|consen  704 LWDLANAKL--------------------YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY-----E  758 (1012)
T ss_pred             eeehhhhhh--------------------hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc-----c
Confidence            999998887                    45788999999999999999999999999999 999999875553     3


Q ss_pred             eeeEE--E--eEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecC--CccEEEEccCCE-EEEEEcCceE
Q 005459          495 QKIQS--K--GLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLL--AKPIVMDVYEDY-ILVTYRPFDV  565 (696)
Q Consensus       495 ~~~~v--~--~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~--~~~l~~~~~~~~-llv~~~d~~~  565 (696)
                      ..-.|  +  .+.|-  ++++|+.++ +...+.+|.+|+.+.|+... +.+..+.  ..++.-..+.|. ++..+..++-
T Consensus       759 g~gpvgtRgARi~wacdgr~viv~Gf-dk~SeRQv~~Y~Aq~l~~~p-l~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~  836 (1012)
T KOG1445|consen  759 GKGPVGTRGARILWACDGRIVIVVGF-DKSSERQVQMYDAQTLDLRP-LYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDR  836 (1012)
T ss_pred             CCCCccCcceeEEEEecCcEEEEecc-cccchhhhhhhhhhhccCCc-ceeeeecccCccccccccCCCceEEEecCCCc
Confidence            32222  2  36774  677776655 34566899999998777543 2333233  233433333333 3333556666


Q ss_pred             EEEEEEEe
Q 005459          566 HIFHVKLF  573 (696)
Q Consensus       566 ~l~~~~~~  573 (696)
                      .+|-|++.
T Consensus       837 ~v~~yEv~  844 (1012)
T KOG1445|consen  837 FVNMYEVI  844 (1012)
T ss_pred             eEEEEEec
Confidence            66666654

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.65  E-value=5.5e-15  Score=146.51  Aligned_cols=212  Identities=16%  Similarity=0.212  Sum_probs=150.6

Q ss_pred             CCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEE
Q 005459          300 WGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQW  378 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W  378 (696)
                      +|.-.+|+++|..++|+| +.+.||||++|.+|.||.+..+.+...+.                                
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt--------------------------------  121 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT--------------------------------  121 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc--------------------------------
Confidence            445557999999999999 77899999999999999997765432221                                


Q ss_pred             cCCCceEEEEecCCcceE--EEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCc
Q 005459          379 DEYGYRLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP  454 (696)
Q Consensus       379 ~~~~~~l~~~~~~~~~~v--~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  454 (696)
                           +.+..+.+|..+|  +++++  ...++|++.|.++.+|++.+++.-                    -+ +.|..-
T Consensus       122 -----epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeal--------------------i~-l~hpd~  175 (472)
T KOG0303|consen  122 -----EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEAL--------------------IT-LDHPDM  175 (472)
T ss_pred             -----cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCcee--------------------ee-cCCCCe
Confidence                 2333456777777  66666  667889999999999999999872                    22 338999


Q ss_pred             eEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcE-EEEEEeecCCCeEEEEEeeCCCCC
Q 005459          455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKI-IVVCNYIDSSNTYELLFYPRYHLD  532 (696)
Q Consensus       455 I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~-lv~~~~~~~~~~~~lr~y~~~~l~  532 (696)
                      |.++.|+.||.+++++++|..+ +||..+++--.-+ ..+|..-.. ...|.++. +.+.++. ...+.++-+|+.++|.
T Consensus       176 i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~-Raifl~~g~i~tTGfs-r~seRq~aLwdp~nl~  252 (472)
T KOG0303|consen  176 VYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPA-RAIFLASGKIFTTGFS-RMSERQIALWDPNNLE  252 (472)
T ss_pred             EEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCCcc-eeEEeccCceeeeccc-cccccceeccCccccc
Confidence            9999999999999999999999 9999998743322 233332112 34554333 4444443 4566899999999888


Q ss_pred             ccceeEEeecCCccEEEEccCCEEEE---EEcCceEEEEEEEE
Q 005459          533 QSSLLCRKSLLAKPIVMDVYEDYILV---TYRPFDVHIFHVKL  572 (696)
Q Consensus       533 ~~~~~~~~~~~~~~l~~~~~~~~llv---~~~d~~~~l~~~~~  572 (696)
                      ....++..+..+-+|.--.+.|.-++   +=.|+.|+-|+++.
T Consensus       253 eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  253 EPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             CcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence            87666777666655444444444333   44566777776653

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=6.2e-14  Score=135.31  Aligned_cols=151  Identities=13%  Similarity=0.205  Sum_probs=114.5

Q ss_pred             EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCC-CCeEEEEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459          261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT-GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC  339 (696)
Q Consensus       261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~-g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~  339 (696)
                      +..|.+.|++|.+|..-|.+.+|+..+ .+++..++.        .+ ..|..+.++-.|.+|+.-..|+.||+++...-
T Consensus       158 ~~~fdr~g~yIitGtsKGkllv~~a~t-~e~vas~ri--------ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di  228 (405)
T KOG1273|consen  158 HGVFDRRGKYIITGTSKGKLLVYDAET-LECVASFRI--------TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDI  228 (405)
T ss_pred             cccccCCCCEEEEecCcceEEEEecch-heeeeeeee--------chheeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence            347899999999999999999999998 788877776        33 78999999999999999999999999998521


Q ss_pred             -------e--eEEEeecc-cccceecccccCCCCCCccceecce----eeEEEcCCCceEEEEecCCcce-E--EEEecc
Q 005459          340 -------R--LMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSER-V--LIFSFG  402 (696)
Q Consensus       340 -------~--~~~~l~~~-~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~~~~~-v--~~~~~~  402 (696)
                             .  +.+.+..- ..-.-.++.|+.++    +++..|+    ...+|.-..|.|+..+.|..+. +  +...|.
T Consensus       229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg----eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~  304 (405)
T KOG1273|consen  229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG----EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV  304 (405)
T ss_pred             cccCccCCcChhHHHHHHHhhhhhhheeecCCc----cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc
Confidence                   1  11111110 01123456788888    8888776    7789999999999999887744 3  456666


Q ss_pred             eeeeeccCCCCceeeeeeecCC
Q 005459          403 KCCLNRGVSGMTYARQVIYGED  424 (696)
Q Consensus       403 ~~~~s~~~d~~~~~w~~~~~~~  424 (696)
                      +.++..-..|.+++|...+-+.
T Consensus       305 rp~i~si~sg~v~iw~~~~~en  326 (405)
T KOG1273|consen  305 RPIIASIASGVVYIWAVVQVEN  326 (405)
T ss_pred             eeeeeeccCCceEEEEeecccc
Confidence            6555555889999999776554

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=2.4e-14  Score=137.83  Aligned_cols=247  Identities=14%  Similarity=0.104  Sum_probs=164.8

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecc-------eecCCCCeEE-EEEcC-C-CcEEEEEecCCeEEEEEccCC-----
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKID-------KELGSGDAVC-ASIAP-E-QQILAVGTRRGVVELYDLAES-----  288 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~v~-v~~sp-~-~~~la~g~~dg~v~vw~~~~~-----  288 (696)
                      +.|..-|+.+++++.|.++++||.....       .|..|..++. +.|.+ . |+.+|+++.|++++||.=...     
T Consensus        19 Vs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~   98 (361)
T KOG2445|consen   19 VSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH   98 (361)
T ss_pred             eeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccc
Confidence            3366789999999999999999964332       2467888887 87765 3 899999999999999985321     


Q ss_pred             C-c--eeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccCCe------eEEEee------ccccc
Q 005459          289 A-S--LIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCR------LMSTIR------QISLS  351 (696)
Q Consensus       289 ~-~--~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~~~------~~~~l~------~~~~~  351 (696)
                      + +  ...++..        ..+.|+++.|.|  -|-.||+++.||.+||++....-      +++.++      +....
T Consensus        99 ~~~Wv~~ttl~D--------srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~  170 (361)
T KOG2445|consen   99 GRRWVRRTTLVD--------SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ  170 (361)
T ss_pred             cceeEEEEEeec--------CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccC
Confidence            1 1  1123333        678999999999  68899999999999999875432      222222      11123


Q ss_pred             ceecccccCCCCCCccceecce--------eeEEEcC--CCceE--EEEecCCcceEEEEe--c--c---eeeeeccCCC
Q 005459          352 SISSPIVKPNQDCKYEPLMSGT--------SMMQWDE--YGYRL--YAIEEGSSERVLIFS--F--G---KCCLNRGVSG  412 (696)
Q Consensus       352 ~v~~~~~sp~~~~~~~~l~sg~--------~~~~W~~--~~~~l--~~~~~~~~~~v~~~~--~--~---~~~~s~~~d~  412 (696)
                      .-.++.++|.. ...+.++-|+        .+.+|..  .+.+.  +..+.+|.+.|..++  |  +   ..+++++.||
T Consensus       171 ~~~CvsWn~sr-~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  171 PCFCVSWNPSR-MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             cceEEeecccc-ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence            34556666432 1123444443        4556643  22233  334568888885444  4  3   4588999999


Q ss_pred             CceeeeeeecCCeEEEEecCCCCcc-eeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459          413 MTYARQVIYGEDRLLVVQSEDTDEL-KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR  481 (696)
Q Consensus       413 ~~~~w~~~~~~~~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~  481 (696)
                       +++|.+......+ ...+...++. .=..++....|.+|+.+|..+.|+-.|..|++.|.||.+ +|..+
T Consensus       250 -v~I~~v~~~~s~i-~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  250 -VRIFKVKVARSAI-EEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             -EEEEEEeeccchh-hhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence             9999887543322 1111111111 112334455688999999999999999999999999999 99764

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=1.1e-13  Score=133.42  Aligned_cols=268  Identities=14%  Similarity=0.179  Sum_probs=153.6

Q ss_pred             eEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcC--CCcEEEEEecCcEEEEEEEEec
Q 005459           23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP--DTKLIAVVTSSLYLHIFKVQIT   99 (696)
Q Consensus        23 ~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsP--Dg~~lav~t~dg~l~l~~l~~~   99 (696)
                      .-+.|.+-|+.+|++ +|.++.|||.+++..   ...++.+=-.+.|.+..+.|.|  =|+.+|+++-|+++.||.=+..
T Consensus        17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~---~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~   93 (361)
T KOG2445|consen   17 HDVSFDFYGRRMATCSSDQTVKIWDSTSDSG---TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEK   93 (361)
T ss_pred             eeeeecccCceeeeccCCCcEEEEeccCCCC---ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccc
Confidence            337799999999998 578999999653322   2222221112458899999976  4789999999999999986522


Q ss_pred             CcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eeeC--CCeEEEEecCCcEEEEecCCcccc-ceeeccCCC
Q 005459          100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSD--NKHMLLGLSDGSLYSISWKGEFYG-AFELVHSSN  174 (696)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~--~~~llv~t~~g~i~~~~w~~~~~~-~~~~~~~p~  174 (696)
                      ...    .+.    .-|      .....+......|+.  |++.  +-.|+++..||.++++.--...+. .-.+     
T Consensus        94 ~~~----~~~----~~W------v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L-----  154 (361)
T KOG2445|consen   94 SEE----AHG----RRW------VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL-----  154 (361)
T ss_pred             ccc----ccc----cee------EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh-----
Confidence            110    000    011      011112222333433  3332  456788889999999743221111 1100     


Q ss_pred             CCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCc--ceEEEEEeCCcEEEEeeccCCceeeeeeecc-
Q 005459          175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM--RLLFVLYSNGQLMSCSVSKKGLKLAEFIKID-  251 (696)
Q Consensus       175 ~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~-  251 (696)
                       ...+..++.                  +.......-.++.|++..  ...+++..|..    ....+.+.+|...... 
T Consensus       155 -q~Ei~~~~~------------------pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~----a~~~~~~~Iye~~e~~r  211 (361)
T KOG2445|consen  155 -QHEIQNVID------------------PPGKNKQPCFCVSWNPSRMHEPLIAVGSDED----APHLNKVKIYEYNENGR  211 (361)
T ss_pred             -hhhhhhccC------------------CcccccCcceEEeeccccccCceEEEEcccC----CccccceEEEEecCCcc
Confidence             000111111                  111122334455555432  12233333320    0011223344332211 


Q ss_pred             ------eecCCCCeEE-EEEcCC----CcEEEEEecCCeEEEEEccCCC-----------ceeeEEeeccCCCCCCCCCC
Q 005459          252 ------KELGSGDAVC-ASIAPE----QQILAVGTRRGVVELYDLAESA-----------SLIRTVSLYDWGYSMDDTGP  309 (696)
Q Consensus       252 ------~~~~~~~~v~-v~~sp~----~~~la~g~~dg~v~vw~~~~~~-----------~~~~~~~~~~~~~~~~h~g~  309 (696)
                            .+.+|.++|+ ++|.|.    +.+||+++.|| |+||++....           .....+.......-.+|.+.
T Consensus       212 Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~  290 (361)
T KOG2445|consen  212 KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE  290 (361)
T ss_pred             eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc
Confidence                  2368999999 999995    67999999999 9999997311           11111111111122359999


Q ss_pred             eEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459          310 VSCIAWTPDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       310 V~~l~~spdg~~lasg~~Dg~v~vW~~  336 (696)
                      |..++|+-.|..|++.+.||.||+|..
T Consensus       291 VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  291 VWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             eEEEEEeeeeeEEeecCCCceeeehhh
Confidence            999999999999999999999999975

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.60  E-value=6.8e-14  Score=141.39  Aligned_cols=278  Identities=12%  Similarity=0.128  Sum_probs=176.0

Q ss_pred             hcccccEEEEcCCCc--EEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEee--e-
Q 005459           66 REGENLQAVWSPDTK--LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--S-  140 (696)
Q Consensus        66 ~~G~~~~v~wsPDg~--~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~--~-  140 (696)
                      ..|.+.+++|.|--.  ++|+|...|.|-+||+....+..                   +....+..+.++|+++.  + 
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-------------------d~v~~f~~hs~~Vs~l~F~P~  245 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-------------------DGVYLFTPHSGPVSGLKFSPA  245 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-------------------CceEEeccCCccccceEecCC
Confidence            357889999999664  89999999999999996322110                   11111233444555543  2 


Q ss_pred             CCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCc
Q 005459          141 DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM  220 (696)
Q Consensus       141 ~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  220 (696)
                      +..+++..+.||+|+..+.++......                .+.                  ......+.++.     
T Consensus       246 n~s~i~ssSyDGtiR~~D~~~~i~e~v----------------~s~------------------~~d~~~fs~~d-----  286 (498)
T KOG4328|consen  246 NTSQIYSSSYDGTIRLQDFEGNISEEV----------------LSL------------------DTDNIWFSSLD-----  286 (498)
T ss_pred             ChhheeeeccCceeeeeeecchhhHHH----------------hhc------------------Cccceeeeecc-----
Confidence            337899999999999877664322111                000                  00011122222     


Q ss_pred             ceEEEEEeCCcEEEEeeccCCceeeeeeecce----ecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCCceee-
Q 005459          221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK----ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIR-  293 (696)
Q Consensus       221 ~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~-  293 (696)
                           ++.+.+.++.+.+=+...+||...+..    +.-|..-|+ +++||- -.+||+++.|++.++||++. ....+ 
T Consensus       287 -----~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~-l~~K~s  360 (498)
T KOG4328|consen  287 -----FSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ-LRGKAS  360 (498)
T ss_pred             -----ccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhh-hcCCCC
Confidence                 444444444444444667888775433    345777788 999995 56899999999999999986 22222 


Q ss_pred             -EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc----CCeeEEEeeccccc----ceecccccCCCCC
Q 005459          294 -TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS----GCRLMSTIRQISLS----SISSPIVKPNQDC  364 (696)
Q Consensus       294 -~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~----~~~~~~~l~~~~~~----~v~~~~~sp~~~~  364 (696)
                       .+..      .+|+.+|.+..|||+|-.|++.+.|..|+|||..    .-...+++...+..    ...-.+|.|+.  
T Consensus       361 p~lst------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~--  432 (498)
T KOG4328|consen  361 PFLST------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY--  432 (498)
T ss_pred             cceec------ccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCc--
Confidence             2332      2499999999999988889999999999999983    33445555532111    12234678865  


Q ss_pred             Cccceecce---eeEEEcCCCceEEEEecCCcc----eEEEEec-ceeeeec-cCCCCceee
Q 005459          365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE----RVLIFSF-GKCCLNR-GVSGMTYAR  417 (696)
Q Consensus       365 ~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~----~v~~~~~-~~~~~s~-~~d~~~~~w  417 (696)
                        ..++.|-   .+-+++..+++++..+.+...    .+..++| ...+++| +..|.+.+|
T Consensus       433 --~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf  492 (498)
T KOG4328|consen  433 --NLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF  492 (498)
T ss_pred             --cEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence              6777665   677899999998777544322    3477777 4434444 445555544

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.59  E-value=5.8e-14  Score=142.77  Aligned_cols=213  Identities=17%  Similarity=0.208  Sum_probs=163.3

Q ss_pred             CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459          257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~  336 (696)
                      ..+.|++......++++|+..|+|++||++. ....+.++.        |+..|+++.+.-...+||+++.-|.|.|-++
T Consensus        80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~hr~lkd--------h~stvt~v~YN~~DeyiAsvs~gGdiiih~~  150 (673)
T KOG4378|consen   80 DNAFCVACASQSLYEISGGQSGCVKIWDLRA-KLIHRFLKD--------HQSTVTYVDYNNTDEYIASVSDGGDIIIHGT  150 (673)
T ss_pred             chHHHHhhhhcceeeeccCcCceeeehhhHH-HHHhhhccC--------CcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence            4667777677779999999999999999985 555566666        9999999999999999999999999999999


Q ss_pred             cCCeeEEEeecccccceecccccCCCCCCccce-ecce---eeEEEcCCCceEEEEe-cCCcceE--EEEec--ceeeee
Q 005459          337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT---SMMQWDEYGYRLYAIE-EGSSERV--LIFSF--GKCCLN  407 (696)
Q Consensus       337 ~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l-~sg~---~~~~W~~~~~~l~~~~-~~~~~~v--~~~~~--~~~~~s  407 (696)
                      .++.-..+|.......|.-+.|+|..    +.+ .+.+   .+-+||..+...++.. +.|..+.  ++|++  .+.+++
T Consensus       151 ~t~~~tt~f~~~sgqsvRll~ys~sk----r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vs  226 (673)
T KOG4378|consen  151 KTKQKTTTFTIDSGQSVRLLRYSPSK----RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVS  226 (673)
T ss_pred             ccCccccceecCCCCeEEEeeccccc----ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEE
Confidence            99987778876534557788898875    433 3333   8899999887766544 4566555  88888  677899


Q ss_pred             ccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE
Q 005459          408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR  486 (696)
Q Consensus       408 ~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~  486 (696)
                      .+.|..+.++|......                     ..-+.-.-|..+++|+++|.+|+.|...|.+ .||++..+-.
T Consensus       227 VG~Dkki~~yD~~s~~s---------------------~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P  285 (673)
T KOG4378|consen  227 VGYDKKINIYDIRSQAS---------------------TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP  285 (673)
T ss_pred             ecccceEEEeecccccc---------------------cceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence            99999999988753322                     1112234488999999999999999999999 9999987644


Q ss_pred             ecCCccceeeeEEEeEeee
Q 005459          487 VFGDITQEQKIQSKGLLWL  505 (696)
Q Consensus       487 ~f~~~~~e~~~~v~~~~w~  505 (696)
                      +--.  +..+-.|+.++|-
T Consensus       286 v~v~--sah~~sVt~vafq  302 (673)
T KOG4378|consen  286 VAVR--SAHDASVTRVAFQ  302 (673)
T ss_pred             ceEe--eecccceeEEEee
Confidence            3221  2222237777775

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.58  E-value=2.4e-12  Score=135.21  Aligned_cols=261  Identities=15%  Similarity=0.182  Sum_probs=173.4

Q ss_pred             ceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCc
Q 005459           22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK  101 (696)
Q Consensus        22 ~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~  101 (696)
                      ..-++|.|||.-|..+.++.+.|+|.+ .+.++..++.      +...+.+++||.||+++|++++|..+.+|+-+-...
T Consensus        15 i~d~afkPDGsqL~lAAg~rlliyD~n-dG~llqtLKg------HKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~   87 (1081)
T KOG1538|consen   15 INDIAFKPDGTQLILAAGSRLLVYDTS-DGTLLQPLKG------HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI   87 (1081)
T ss_pred             hheeEECCCCceEEEecCCEEEEEeCC-Cccccccccc------ccceEEEEEEccCCceeccCCCceeEEEecccccce
Confidence            334899999999988999999999997 6666665553      335678999999999999999999999998763332


Q ss_pred             ccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeC--CCeEEEEecCCcEEEEecCCccccceeeccCCCCCccc
Q 005459          102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA  179 (696)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~--~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~  179 (696)
                      ..+                         .+...|.|++.+  ...++.++-+ ..-.  |..+....             
T Consensus        88 LkY-------------------------SH~D~IQCMsFNP~~h~LasCsLs-dFgl--WS~~qK~V-------------  126 (1081)
T KOG1538|consen   88 LKY-------------------------SHNDAIQCMSFNPITHQLASCSLS-DFGL--WSPEQKSV-------------  126 (1081)
T ss_pred             eee-------------------------ccCCeeeEeecCchHHHhhhcchh-hccc--cChhhhhH-------------
Confidence            111                         111123333322  2333333211 1111  33221110             


Q ss_pred             ccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-----c
Q 005459          180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----L  254 (696)
Q Consensus       180 ~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-----~  254 (696)
                                               ..+++.++..        .++++.||++++.+-.++|+.+-+....++.     .
T Consensus       127 -------------------------~K~kss~R~~--------~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpg  173 (1081)
T KOG1538|consen  127 -------------------------SKHKSSSRII--------CCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPG  173 (1081)
T ss_pred             -------------------------HhhhhheeEE--------EeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCC
Confidence                                     0112222222        2668999999999999999988764322221     3


Q ss_pred             CCCCeEE-EEEcCC-----CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459          255 GSGDAVC-ASIAPE-----QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS  328 (696)
Q Consensus       255 ~~~~~v~-v~~sp~-----~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D  328 (696)
                      |.+.++. ++|+|.     ...+|+..++.++..|.++  ++.+..-+.        -.-.-.|+.+.|+|.++..|+.|
T Consensus       174 g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G~~Igk~r~--------L~FdP~CisYf~NGEy~LiGGsd  243 (1081)
T KOG1538|consen  174 GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--GKQIGKDRA--------LNFDPCCISYFTNGEYILLGGSD  243 (1081)
T ss_pred             CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--ceeeccccc--------CCCCchhheeccCCcEEEEccCC
Confidence            4567777 999995     3578888999999999886  344432222        12235789999999999999999


Q ss_pred             CcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEc
Q 005459          329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD  379 (696)
Q Consensus       329 g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~  379 (696)
                      +.++++.-.| -.+.|+.+. ...|++++..|++    +..+-|+   ++..++
T Consensus       244 k~L~~fTR~G-vrLGTvg~~-D~WIWtV~~~PNs----Q~v~~GCqDGTiACyN  291 (1081)
T KOG1538|consen  244 KQLSLFTRDG-VRLGTVGEQ-DSWIWTVQAKPNS----QYVVVGCQDGTIACYN  291 (1081)
T ss_pred             CceEEEeecC-eEEeecccc-ceeEEEEEEccCC----ceEEEEEccCeeehhh
Confidence            9999997554 456677665 6789999999998    6666554   444444

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.58  E-value=3.7e-14  Score=148.53  Aligned_cols=266  Identities=16%  Similarity=0.265  Sum_probs=188.9

Q ss_pred             eEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459          259 AVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS  337 (696)
Q Consensus       259 ~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~  337 (696)
                      .+. ++|-|||..|+.+. +..+.+||.++ +..++++++        |+..|.|++||.||+.+|||+.|+.|.+|+..
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~nd-G~llqtLKg--------HKDtVycVAys~dGkrFASG~aDK~VI~W~~k   83 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSD-GTLLQPLKG--------HKDTVYCVAYAKDGKRFASGSADKSVIIWTSK   83 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCC-ccccccccc--------ccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence            566 99999999988865 55789999998 899999999        99999999999999999999999999999864


Q ss_pred             CCeeEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCC
Q 005459          338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSG  412 (696)
Q Consensus       338 ~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~  412 (696)
                      -   ...|+-.|.+.|.+..|.|-.    +.++|.+  .-.+|+++.......  ....++..-++   |..++-|-.+|
T Consensus        84 l---EG~LkYSH~D~IQCMsFNP~~----h~LasCsLsdFglWS~~qK~V~K~--kss~R~~~CsWtnDGqylalG~~nG  154 (1081)
T KOG1538|consen   84 L---EGILKYSHNDAIQCMSFNPIT----HQLASCSLSDFGLWSPEQKSVSKH--KSSSRIICCSWTNDGQYLALGMFNG  154 (1081)
T ss_pred             c---cceeeeccCCeeeEeecCchH----HHhhhcchhhccccChhhhhHHhh--hhheeEEEeeecCCCcEEEEeccCc
Confidence            3   334554447889999999987    7788776  556788765432211  12345555555   88899999999


Q ss_pred             CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC-----CEEEEEeCCccE-EEEccCCceE
Q 005459          413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-----MFLAVAGLHGLI-LYDIRQKKWR  486 (696)
Q Consensus       413 ~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG-----~~la~ag~dG~i-~w~~~sg~w~  486 (696)
                      ++.+++ ..++.++.+-                 .-.+.|.||.+++|+|..     ..+|++.-..+. .|.+...   
T Consensus       155 TIsiRN-k~gEek~~I~-----------------Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~---  213 (1081)
T KOG1538|consen  155 TISIRN-KNGEEKVKIE-----------------RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK---  213 (1081)
T ss_pred             eEEeec-CCCCcceEEe-----------------CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce---
Confidence            999886 3344433211                 123678999999999963     368888888888 7766442   


Q ss_pred             ecCCccceeeeE--EEeEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeE-EeecCCccEEEEccCCEEEEEEcCc
Q 005459          487 VFGDITQEQKIQ--SKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLC-RKSLLAKPIVMDVYEDYILVTYRPF  563 (696)
Q Consensus       487 ~f~~~~~e~~~~--v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~-~~~~~~~~l~~~~~~~~llv~~~d~  563 (696)
                      ..+. ...-+|.  |..-+-.+.+++++     +.+..|.+|.|+...-..+.. -+.+-  .+.+-|++.+..++|-|+
T Consensus       214 ~Igk-~r~L~FdP~CisYf~NGEy~LiG-----Gsdk~L~~fTR~GvrLGTvg~~D~WIW--tV~~~PNsQ~v~~GCqDG  285 (1081)
T KOG1538|consen  214 QIGK-DRALNFDPCCISYFTNGEYILLG-----GSDKQLSLFTRDGVRLGTVGEQDSWIW--TVQAKPNSQYVVVGCQDG  285 (1081)
T ss_pred             eecc-cccCCCCchhheeccCCcEEEEc-----cCCCceEEEeecCeEEeeccccceeEE--EEEEccCCceEEEEEccC
Confidence            1221 1111233  33444467888887     345789999997211111221 11122  367778999999999999


Q ss_pred             eEEEEEEEE
Q 005459          564 DVHIFHVKL  572 (696)
Q Consensus       564 ~~~l~~~~~  572 (696)
                      ++.-|++..
T Consensus       286 TiACyNl~f  294 (1081)
T KOG1538|consen  286 TIACYNLIF  294 (1081)
T ss_pred             eeehhhhHH
Confidence            999997654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.57  E-value=8.2e-14  Score=140.84  Aligned_cols=276  Identities=14%  Similarity=0.166  Sum_probs=174.5

Q ss_pred             CCCeE-EEEEcCCC--cEEEEEecCCeEEEEEccCCC---ceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcC
Q 005459          256 SGDAV-CASIAPEQ--QILAVGTRRGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS  328 (696)
Q Consensus       256 ~~~~v-~v~~sp~~--~~la~g~~dg~v~vw~~~~~~---~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~D  328 (696)
                      +...+ +++|+|..  +++|+|..-|+|-+||+++..   .-+..+..        |.++|.+|.|+| +-..+.+.+.|
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~--------hs~~Vs~l~F~P~n~s~i~ssSyD  256 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP--------HSGPVSGLKFSPANTSQIYSSSYD  256 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc--------CCccccceEecCCChhheeeeccC
Confidence            34444 59999953  699999999999999996311   23444555        999999999999 55688899999


Q ss_pred             CcEEEEEccCCee--EEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceE-EEEecCCcceE--EEEe
Q 005459          329 RGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL-YAIEEGSSERV--LIFS  400 (696)
Q Consensus       329 g~v~vW~~~~~~~--~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l-~~~~~~~~~~v--~~~~  400 (696)
                      |+|++=|+.+...  +.++... ...+.+..|+...    ..++.|.   ..-+||.+...- .....-|..+|  +.+.
T Consensus       257 GtiR~~D~~~~i~e~v~s~~~d-~~~fs~~d~~~e~----~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N  331 (498)
T KOG4328|consen  257 GTIRLQDFEGNISEEVLSLDTD-NIWFSSLDFSAES----RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN  331 (498)
T ss_pred             ceeeeeeecchhhHHHhhcCcc-ceeeeeccccCCC----ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence            9999999987642  2222211 2345556665554    3334333   334566643221 22233456677  6666


Q ss_pred             c--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecC-eeeecCCCceEEEEEcCCCCEEEEEeCCccE-
Q 005459          401 F--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-  476 (696)
Q Consensus       401 ~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-  476 (696)
                      |  -..++|++.|++.++||+.+-..+-                 -| .....|.-+|.++.|||+|-.|++.+.|..| 
T Consensus       332 P~~p~~laT~s~D~T~kIWD~R~l~~K~-----------------sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR  394 (498)
T KOG4328|consen  332 PVCPWFLATASLDQTAKIWDLRQLRGKA-----------------SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR  394 (498)
T ss_pred             CCCchheeecccCcceeeeehhhhcCCC-----------------CcceecccccceeeeeEEcCCCCceEeeccCCceE
Confidence            6  6679999999999999997765531                 02 1234788899999999999889999999999 


Q ss_pred             EEEcc--CCceEecCCccceeee----EEEeEeeeCc--EEEEEEeecCCCeEEEEEeeCCCCCccceeEE------eec
Q 005459          477 LYDIR--QKKWRVFGDITQEQKI----QSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCR------KSL  542 (696)
Q Consensus       477 ~w~~~--sg~w~~f~~~~~e~~~----~v~~~~w~~~--~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~------~~~  542 (696)
                      +||..  +.+-.......|.+..    ....-.|.++  +++++.|.     ..|-||+-.   ...+.+.      ..+
T Consensus       395 v~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~-----r~IDv~~~~---~~q~v~el~~P~~~tI  466 (498)
T KOG4328|consen  395 VFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP-----RPIDVFDGN---GGQMVCELHDPESSTI  466 (498)
T ss_pred             EeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccC-----cceeEEcCC---CCEEeeeccCcccccc
Confidence            99984  1111111111122111    1224566544  45555332     458888775   1111111      123


Q ss_pred             CCccEEEEccCCEEEEEEcCceEEEEEEE
Q 005459          543 LAKPIVMDVYEDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       543 ~~~~l~~~~~~~~llv~~~d~~~~l~~~~  571 (696)
                      ++ +..+.|.++.++.++ +....+|-+.
T Consensus       467 ~~-vn~~HP~~~~~~aG~-~s~Gki~vft  493 (498)
T KOG4328|consen  467 PS-VNEFHPMRDTLAAGG-NSSGKIYVFT  493 (498)
T ss_pred             cc-ceeecccccceeccC-CccceEEEEe
Confidence            33 567788888888844 3455566444

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.57  E-value=1.1e-12  Score=130.93  Aligned_cols=134  Identities=16%  Similarity=0.278  Sum_probs=108.2

Q ss_pred             EEeCCc-EEEEeeccCCceeeeeeecce------------ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC---
Q 005459          226 LYSNGQ-LMSCSVSKKGLKLAEFIKIDK------------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES---  288 (696)
Q Consensus       226 ~s~dG~-~~~~~~~d~~~~~~~~~~~~~------------~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~---  288 (696)
                      |..++. .+++++.|..+++|.....+.            +..|..++. +.|+|+|.+||+|+.+|+|.+|...+.   
T Consensus        21 fq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~  100 (434)
T KOG1009|consen   21 FQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF  100 (434)
T ss_pred             eccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc
Confidence            444444 889999999999998764321            146888888 999999999999999999999987620   


Q ss_pred             ---C---------ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecc
Q 005459          289 ---A---------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP  356 (696)
Q Consensus       289 ---~---------~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~  356 (696)
                         .         ...+.+.+        |...|..++|+||++.+++|+.|+.+++||+..+.+.+.+.+| ...|+.+
T Consensus       101 ~~d~e~~~~ke~w~v~k~lr~--------h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh-~~yvqgv  171 (434)
T KOG1009|consen  101 DADTEADLNKEKWVVKKVLRG--------HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH-EHYVQGV  171 (434)
T ss_pred             cccchhhhCccceEEEEEecc--------cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc-cccccee
Confidence               0         11223344        9999999999999999999999999999999999999999888 7778888


Q ss_pred             cccCCCCCCccceecc
Q 005459          357 IVKPNQDCKYEPLMSG  372 (696)
Q Consensus       357 ~~sp~~~~~~~~l~sg  372 (696)
                      +++|-.    +++++-
T Consensus       172 awDpl~----qyv~s~  183 (434)
T KOG1009|consen  172 AWDPLN----QYVASK  183 (434)
T ss_pred             ecchhh----hhhhhh
Confidence            888876    665543

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.55  E-value=8.3e-14  Score=140.42  Aligned_cols=221  Identities=13%  Similarity=0.145  Sum_probs=162.6

Q ss_pred             CCcEEEEeeccCCceeeeeee-----ccee-------------------cCCCCeEE-EEEcCC-CcEEEEEecCCeEEE
Q 005459          229 NGQLMSCSVSKKGLKLAEFIK-----IDKE-------------------LGSGDAVC-ASIAPE-QQILAVGTRRGVVEL  282 (696)
Q Consensus       229 dG~~~~~~~~d~~~~~~~~~~-----~~~~-------------------~~~~~~v~-v~~sp~-~~~la~g~~dg~v~v  282 (696)
                      -|++++++.-+..|.+||+.-     |...                   .+|++++- ++||-. .+.||+|+.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            477888888888999998641     1000                   36888887 888886 468999999999999


Q ss_pred             EEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCe---eEEEeecccccceecccc
Q 005459          283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIV  358 (696)
Q Consensus       283 w~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~---~~~~l~~~~~~~v~~~~~  358 (696)
                      ||+++ +++..++..        |.+.|.+++|.| ....|.+|+.|++|++.|.....   ....+    .+.|-.+++
T Consensus       271 WD~~~-g~p~~s~~~--------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~----~g~VEkv~w  337 (463)
T KOG0270|consen  271 WDVDT-GKPKSSITH--------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF----DGEVEKVAW  337 (463)
T ss_pred             EEcCC-CCcceehhh--------cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe----ccceEEEEe
Confidence            99999 888888887        999999999999 68899999999999999987321   11222    234777778


Q ss_pred             cCCCCCCccceecce---eeEEEcCCCc-eEEEEecCCcceEEEEec----ceeeeeccCCCCceeeeeeecCCeEEEEe
Q 005459          359 KPNQDCKYEPLMSGT---SMMQWDEYGY-RLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQ  430 (696)
Q Consensus       359 sp~~~~~~~~l~sg~---~~~~W~~~~~-~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~  430 (696)
                      .|...   ..++.+.   +++-.|.+.. +++.+...|.+.|-.+++    ...++|++.|+++++|++.-...+....+
T Consensus       338 ~~~se---~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~  414 (463)
T KOG0270|consen  338 DPHSE---NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH  414 (463)
T ss_pred             cCCCc---eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc
Confidence            77652   3344442   7777888754 888889999999955555    55688999999999999876554310000


Q ss_pred             cCCCCcceeEEeecCeeeecCCCceEEEEEcCCCC-EEEEEeCCccE-EEEccCC
Q 005459          431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQK  483 (696)
Q Consensus       431 ~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~-~la~ag~dG~i-~w~~~sg  483 (696)
                                      .+.  -+...|.++.|+-- .+|.||..+.+ +||+.+.
T Consensus       415 ----------------~~~--~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  415 ----------------SFK--LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             ----------------ccc--ccceeecccCCCcceEEEecCccceEEEeecccC
Confidence                            000  11255667777654 68889999977 9998765

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.55  E-value=7.4e-14  Score=140.77  Aligned_cols=230  Identities=13%  Similarity=0.208  Sum_probs=159.2

Q ss_pred             CCcEEEEEecCCeEEEEEccCCCceeeEEeec----------c-CC-CCCCCCCCeEEEEECCC-CCeEEEEEcCCcEEE
Q 005459          267 EQQILAVGTRRGVVELYDLAESASLIRTVSLY----------D-WG-YSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTV  333 (696)
Q Consensus       267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~----------~-~~-~~~~h~g~V~~l~~spd-g~~lasg~~Dg~v~v  333 (696)
                      .|+++|+|+.|-.|.|||++--....+.+...          . .. ...+|+..|.+|+|.-+ -+.||||+.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            47899999999999999987522222211110          0 01 12369999999999875 458999999999999


Q ss_pred             EEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCC----ceEEEEecCCcceEEEEec--cee
Q 005459          334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG----YRLYAIEEGSSERVLIFSF--GKC  404 (696)
Q Consensus       334 W~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~----~~l~~~~~~~~~~v~~~~~--~~~  404 (696)
                      ||+.++++..++..| ...|+++.|+|..+   +.+++|+   ++.+.|.+.    +.-|.. .+.-.+ +.+.+  -..
T Consensus       271 WD~~~g~p~~s~~~~-~k~Vq~l~wh~~~p---~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-~g~VEk-v~w~~~se~~  344 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHH-GKKVQTLEWHPYEP---SVLLSGSYDGTVALKDCRDPSNSGKEWKF-DGEVEK-VAWDPHSENS  344 (463)
T ss_pred             EEcCCCCcceehhhc-CCceeEEEecCCCc---eEEEeccccceEEeeeccCccccCceEEe-ccceEE-EEecCCCcee
Confidence            999999999999966 67899999999864   7788888   777777652    222222 232222 34444  556


Q ss_pred             eeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCC-EEEEEeCCccE-EEEccC
Q 005459          405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       405 ~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~-~la~ag~dG~i-~w~~~s  482 (696)
                      ++.+..||+++-.|+.+.++                   ..-+..+|+.+|.++++++.-. +++++|.|+.+ +|++..
T Consensus       345 f~~~tddG~v~~~D~R~~~~-------------------~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~  405 (463)
T KOG0270|consen  345 FFVSTDDGTVYYFDIRNPGK-------------------PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV  405 (463)
T ss_pred             EEEecCCceEEeeecCCCCC-------------------ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence            77788999999999887765                   2456789999999999998654 68999999999 999865


Q ss_pred             CceEecCCccceeeeEEE---eEeeeCc--EEEEEEeecCCCeEEEEEeeCC
Q 005459          483 KKWRVFGDITQEQKIQSK---GLLWLGK--IIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       483 g~w~~f~~~~~e~~~~v~---~~~w~~~--~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      ..=+.    ..+++|.++   +++-..+  +.++.    ......+|+|+..
T Consensus       406 ~~~~~----v~~~~~~~~rl~c~~~~~~~a~~la~----GG~k~~~~vwd~~  449 (463)
T KOG0270|consen  406 DSPKS----VKEHSFKLGRLHCFALDPDVAFTLAF----GGEKAVLRVWDIF  449 (463)
T ss_pred             CCCcc----cccccccccceeecccCCCcceEEEe----cCccceEEEeecc
Confidence            44222    234555433   2222222  23322    1222479999874

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.55  E-value=1.2e-13  Score=136.34  Aligned_cols=119  Identities=17%  Similarity=0.309  Sum_probs=97.7

Q ss_pred             CcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-----cCCCCeEE-EEEcCCCcEEEEEec
Q 005459          203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAPEQQILAVGTR  276 (696)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~-v~~sp~~~~la~g~~  276 (696)
                      ++..|...|-++.|+|.         ...++++++-|+++++||.+.+++.     ..|..-|. ++||.+..+||+|+.
T Consensus       252 Pf~gH~~SVEDLqWSpt---------E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D  322 (440)
T KOG0302|consen  252 PFTGHTKSVEDLQWSPT---------EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD  322 (440)
T ss_pred             cccccccchhhhccCCc---------cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC
Confidence            34456667778887663         3346778889999999999876332     56777788 999999999999999


Q ss_pred             CCeEEEEEccCC--CceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccC
Q 005459          277 RGVVELYDLAES--ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       277 dg~v~vw~~~~~--~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~  338 (696)
                      ||+++|||++.-  ++++.+++-        |+.+|++|.|+| +...||+++.|..|.+||+.-
T Consensus       323 dGt~~iwDLR~~~~~~pVA~fk~--------Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  323 DGTLSIWDLRQFKSGQPVATFKY--------HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             CceEEEEEhhhccCCCcceeEEe--------ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            999999999862  466778888        999999999999 667899999999999999854

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.54  E-value=2.8e-13  Score=131.33  Aligned_cols=255  Identities=16%  Similarity=0.245  Sum_probs=175.8

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeec-------cee--c-------CCCCeEE--EEE------cCCCcEEEEEecCCe
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKI-------DKE--L-------GSGDAVC--ASI------APEQQILAVGTRRGV  279 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~-------~~~--~-------~~~~~v~--v~~------sp~~~~la~g~~dg~  279 (696)
                      +-++|||..+++.+.|..+++|++...       ...  .       .....+.  +.+      -|+-.++|+.+.|.-
T Consensus        55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P  134 (406)
T KOG2919|consen   55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP  134 (406)
T ss_pred             ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence            457899999999999999999986521       000  0       0112232  333      367899999999999


Q ss_pred             EEEEEccCCCceeeEEeeccCCCCCCCCCC---eEEEEECCCCCeEEEEEcCCcEEEEEcc-CCe---eEEEeec--cc-
Q 005459          280 VELYDLAESASLIRTVSLYDWGYSMDDTGP---VSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCR---LMSTIRQ--IS-  349 (696)
Q Consensus       280 v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~---V~~l~~spdg~~lasg~~Dg~v~vW~~~-~~~---~~~~l~~--~~-  349 (696)
                      |++||.-+ +++....++.+      |...   -.+|+|||||..|++|.. +.|+++|+. .++   ...++..  .+ 
T Consensus       135 Ih~wdaft-G~lraSy~~yd------h~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq  206 (406)
T KOG2919|consen  135 IHLWDAFT-GKLRASYRAYD------HQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQ  206 (406)
T ss_pred             eeeeeccc-cccccchhhhh------hHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccc
Confidence            99999988 77776666644      5444   458999999999999987 899999993 222   2222221  11 


Q ss_pred             ccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccC-CCCceeeeeeec
Q 005459          350 LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGV-SGMTYARQVIYG  422 (696)
Q Consensus       350 ~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~-d~~~~~w~~~~~  422 (696)
                      .+-+++.+|+|...   ..++.|+   +.-++.-.+.+++.++.+|.+.|..+.+   +..+.+|.. |..+..||+.+.
T Consensus       207 ~giisc~a~sP~~~---~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  207 KGIISCFAFSPMDS---KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             cceeeeeeccCCCC---cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence            34478889999862   4556555   5566666678888888899999966665   778888775 668889999887


Q ss_pred             CCeEEEEecCCCCcceeEEeecCeeeecC----CCceEEEEEcCCCCEEEEEeCCccE-EEEccC-CceEecCCccceee
Q 005459          423 EDRLLVVQSEDTDELKILHLNLPVSYISQ----NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ-KKWRVFGDITQEQK  496 (696)
Q Consensus       423 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~----~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s-g~w~~f~~~~~e~~  496 (696)
                      .+-+                   -.+..|    |-.|. ..+.|+|++||+|+.||.| +||.+. |.|..-   .+..+
T Consensus       284 ~~pv-------------------~~L~rhv~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv---~~~~s  340 (406)
T KOG2919|consen  284 RDPV-------------------YALERHVGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV---TGNYS  340 (406)
T ss_pred             cchh-------------------hhhhhhccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCcccc---ccccc
Confidence            7622                   122223    22332 3567999999999999999 999987 554321   12233


Q ss_pred             eEEEeEeeeCcEEEEE
Q 005459          497 IQSKGLLWLGKIIVVC  512 (696)
Q Consensus       497 ~~v~~~~w~~~~lv~~  512 (696)
                      -.|.++..++-+-+.|
T Consensus       341 d~vNgvslnP~mpila  356 (406)
T KOG2919|consen  341 DTVNGVSLNPIMPILA  356 (406)
T ss_pred             ccccceecCcccceee
Confidence            3466888777654444

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=3.6e-13  Score=135.46  Aligned_cols=206  Identities=17%  Similarity=0.230  Sum_probs=133.1

Q ss_pred             CCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459           20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI   98 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~   98 (696)
                      +.+.+++|+.||+.+|+. +|++++||+.  |...     ...+..++++++.++.|||||+.||+.+.| ..+||+++.
T Consensus       145 g~~k~vaf~~~gs~latgg~dg~lRv~~~--Ps~~-----t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~  216 (398)
T KOG0771|consen  145 GQQKVVAFNGDGSKLATGGTDGTLRVWEW--PSML-----TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT  216 (398)
T ss_pred             CcceEEEEcCCCCEeeeccccceEEEEec--Ccch-----hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc
Confidence            567889999999999998 6889999997  3221     122334678999999999999999999999 899999986


Q ss_pred             cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcc
Q 005459           99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV  178 (696)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~  178 (696)
                      +..-..   ..+.                             +.++++..+.                            
T Consensus       217 g~~~a~---~t~~-----------------------------~k~~~~~~cR----------------------------  236 (398)
T KOG0771|consen  217 GAALAR---KTPF-----------------------------SKDEMFSSCR----------------------------  236 (398)
T ss_pred             Cchhhh---cCCc-----------------------------ccchhhhhce----------------------------
Confidence            632110   0000                             0111111110                            


Q ss_pred             cccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeee----eecceec
Q 005459          179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF----IKIDKEL  254 (696)
Q Consensus       179 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~----~~~~~~~  254 (696)
                           |+.|+.                  + ...        ..++.-.|-|.+..   .+  +.+|+.    ...+...
T Consensus       237 -----F~~d~~------------------~-~~l--------~laa~~~~~~~v~~---~~--~~~w~~~~~l~~~~~~~  279 (398)
T KOG0771|consen  237 -----FSVDNA------------------Q-ETL--------RLAASQFPGGGVRL---CD--ISLWSGSNFLRLRKKIK  279 (398)
T ss_pred             -----ecccCC------------------C-ceE--------EEEEecCCCCceeE---EE--eeeeccccccchhhhhh
Confidence                 000000                  0 000        00000111111111   01  112222    1112224


Q ss_pred             CCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459          255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW  334 (696)
Q Consensus       255 ~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW  334 (696)
                      .++...++++|+||+++|.|+.||.|.+|+..+ .+..+-.+.       .|.+.|+.+.|+||.+++++-+.|.+.+|-
T Consensus       280 ~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~-lq~~~~vk~-------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  280 RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKS-LQRLQYVKE-------AHLGFVTGLTFSPDSRYLASVSSDNEAAVT  351 (398)
T ss_pred             ccCcceeEEEcCCCcEEEEeccCCcEEEEEece-eeeeEeehh-------hheeeeeeEEEcCCcCcccccccCCceeEE
Confidence            456667799999999999999999999999887 555554443       499999999999999999999999999998


Q ss_pred             EccC
Q 005459          335 SVSG  338 (696)
Q Consensus       335 ~~~~  338 (696)
                      .+..
T Consensus       352 ~l~v  355 (398)
T KOG0771|consen  352 KLAV  355 (398)
T ss_pred             EEee
Confidence            8765

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=2.2e-13  Score=137.01  Aligned_cols=203  Identities=18%  Similarity=0.165  Sum_probs=129.4

Q ss_pred             EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459          260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC  339 (696)
Q Consensus       260 v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~  339 (696)
                      -+++|+++|+.||+|+.||++|||++.. ...+.....        |.+.|.+|.|||||+.|++-+.| ..+||++.++
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~--------~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g  217 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIA--------HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG  217 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHh--------hcCccccceeCCCCcEEEEecCC-ceEEEEeccC
Confidence            4599999999999999999999999776 455555555        89999999999999999999999 9999999998


Q ss_pred             eeEEEeec-ccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeee
Q 005459          340 RLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQ  418 (696)
Q Consensus       340 ~~~~~l~~-~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~  418 (696)
                      ..+.++.. .....+..+.|+.+++.  +              +..+...                   ..+.+.++.++
T Consensus       218 ~~~a~~t~~~k~~~~~~cRF~~d~~~--~--------------~l~laa~-------------------~~~~~~v~~~~  262 (398)
T KOG0771|consen  218 AALARKTPFSKDEMFSSCRFSVDNAQ--E--------------TLRLAAS-------------------QFPGGGVRLCD  262 (398)
T ss_pred             chhhhcCCcccchhhhhceecccCCC--c--------------eEEEEEe-------------------cCCCCceeEEE
Confidence            66655542 21223445555544311  0              0011111                   11112222222


Q ss_pred             eeecCC-eEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceee
Q 005459          419 VIYGED-RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQK  496 (696)
Q Consensus       419 ~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~  496 (696)
                      +..-.. .+               . ...+.......|.++++|+||+++|.|+.||.| +|+..+-+--.+-.  +.+.
T Consensus       263 ~~~w~~~~~---------------l-~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk--~aH~  324 (398)
T KOG0771|consen  263 ISLWSGSNF---------------L-RLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK--EAHL  324 (398)
T ss_pred             eeeeccccc---------------c-chhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh--hhhe
Confidence            111000 00               0 011122234469999999999999999999999 99987765433333  3445


Q ss_pred             eEEEeEeeeCcEEEEEEeecCCCeEEEEEeeC
Q 005459          497 IQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR  528 (696)
Q Consensus       497 ~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~  528 (696)
                      +.|+++.+.++.-..+.   -+.+.+.++...
T Consensus       325 ~~VT~ltF~Pdsr~~~s---vSs~~~~~v~~l  353 (398)
T KOG0771|consen  325 GFVTGLTFSPDSRYLAS---VSSDNEAAVTKL  353 (398)
T ss_pred             eeeeeEEEcCCcCcccc---cccCCceeEEEE
Confidence            57888888765443331   133456666655

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.52  E-value=1.9e-10  Score=123.86  Aligned_cols=354  Identities=22%  Similarity=0.291  Sum_probs=222.1

Q ss_pred             CceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEE-cCCCc-EEEEEec-CcEEEEEEE
Q 005459           21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVW-SPDTK-LIAVVTS-SLYLHIFKV   96 (696)
Q Consensus        21 ~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~w-sPDg~-~lav~t~-dg~l~l~~l   96 (696)
                      ....+.|++++..++..+ +..+.+|+...+...+..+.....     ..+..+.+ +||+. .++..+. ++.+++|++
T Consensus        67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  141 (466)
T COG2319          67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----SSVSKLALSSPDGNSILLASSSLDGTVKLWDL  141 (466)
T ss_pred             eEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----CceeeEEEECCCcceEEeccCCCCccEEEEEe
Confidence            344467899999888775 889999998744313333322111     24455555 99998 5555555 899999999


Q ss_pred             Ee-cCcccccCCCCCCCceeeeeeEEEeeecccccccee--EEEeeeCCCeEEEEec-CCcEEEEecCCccccceeeccC
Q 005459           97 QI-TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLS--VSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHS  172 (696)
Q Consensus        97 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--v~~~~~~~~~llv~t~-~g~i~~~~w~~~~~~~~~~~~~  172 (696)
                      .. ......                       +..+...  ..++.+++..++.+.. ++.+..|+-.  ......    
T Consensus       142 ~~~~~~~~~-----------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----  192 (466)
T COG2319         142 STPGKLIRT-----------------------LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR--TGKPLS----  192 (466)
T ss_pred             cCCCeEEEE-----------------------EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC--CCceEE----
Confidence            75 111000                       1111122  3355666666777764 8888774433  211110    


Q ss_pred             CCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCc-EEEEeeccCCceeeeeeecc
Q 005459          173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKID  251 (696)
Q Consensus       173 p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~~~~~~~~  251 (696)
                                                    ....+...+..++          +.|+|+ .++..+.|+++++|+...+.
T Consensus       193 ------------------------------~~~~~~~~v~~~~----------~~~~~~~~~~~~~~d~~i~~wd~~~~~  232 (466)
T COG2319         193 ------------------------------TLAGHTDPVSSLA----------FSPDGGLLIASGSSDGTIRLWDLSTGK  232 (466)
T ss_pred             ------------------------------eeccCCCceEEEE----------EcCCcceEEEEecCCCcEEEEECCCCc
Confidence                                          0111344465555          446776 44444778888888655332


Q ss_pred             e----ecCCCCeEEE-EEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE
Q 005459          252 K----ELGSGDAVCA-SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW  326 (696)
Q Consensus       252 ~----~~~~~~~v~v-~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~  326 (696)
                      .    +.+|.... + .|+|++.++++++.|+.+++|++.........+..        |...|.++.|+|++..+++++
T Consensus       233 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~  303 (466)
T COG2319         233 LLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG--------HSSSVLSVAFSPDGKLLASGS  303 (466)
T ss_pred             EEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEec--------CCccEEEEEECCCCCEEEEee
Confidence            2    34566554 4 79999999999999999999999873332343434        899999999999999999999


Q ss_pred             cCCcEEEEEccCCeeEEEee--cccccceecccccCCCCCCccceecc----eeeEEEcCCCceEEEEecCCcc-eEEEE
Q 005459          327 KSRGLTVWSVSGCRLMSTIR--QISLSSISSPIVKPNQDCKYEPLMSG----TSMMQWDEYGYRLYAIEEGSSE-RVLIF  399 (696)
Q Consensus       327 ~Dg~v~vW~~~~~~~~~~l~--~~~~~~v~~~~~sp~~~~~~~~l~sg----~~~~~W~~~~~~l~~~~~~~~~-~v~~~  399 (696)
                      .|+.+++|+..+........  .| ...+..+.+.+++    ..+..+    ..+..|+............... ..+.+
T Consensus       304 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (466)
T COG2319         304 SDGTVRLWDLETGKLLSSLTLKGH-EGPVSSLSFSPDG----SLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSF  378 (466)
T ss_pred             CCCcEEEEEcCCCceEEEeeeccc-CCceEEEEECCCC----CEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEE
Confidence            99889999998887766665  45 4457777773221    222222    2455588876662222222221 11333


Q ss_pred             ecceeee-eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-E
Q 005459          400 SFGKCCL-NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-L  477 (696)
Q Consensus       400 ~~~~~~~-s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~  477 (696)
                      ....... .+..++.+.+|+.......                    .....+...+....+++++.+++.++.++.+ .
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (466)
T COG2319         379 SPDGRVVSSGSTDGTVRLWDLSTGSLL--------------------RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRL  438 (466)
T ss_pred             CCCCCEEEEecCCCceEEEecccCeee--------------------eeccCCCCcEEEEEECCCCcEEEEecCCCcEEE
Confidence            2211122 2567788888887655542                    1111221679999999999999999999999 9


Q ss_pred             EEccC
Q 005459          478 YDIRQ  482 (696)
Q Consensus       478 w~~~s  482 (696)
                      |+..+
T Consensus       439 ~~~~~  443 (466)
T COG2319         439 WDLKT  443 (466)
T ss_pred             EeccC
Confidence            99887

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=1.2e-13  Score=143.05  Aligned_cols=250  Identities=15%  Similarity=0.262  Sum_probs=173.6

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccC---C----CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE---S----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG  325 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~---~----~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg  325 (696)
                      ..|.+.+. .+|.|-...|++++.||++++|++..   .    .+++.++.+        |.|+|.|++.++.|..+.+|
T Consensus       291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra--------H~gPVl~v~v~~n~~~~ysg  362 (577)
T KOG0642|consen  291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA--------HEGPVLCVVVPSNGEHCYSG  362 (577)
T ss_pred             ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec--------ccCceEEEEecCCceEEEee
Confidence            56888888 99999999999999999999999932   1    246778888        99999999999999999999


Q ss_pred             EcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEec---c
Q 005459          326 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF---G  402 (696)
Q Consensus       326 ~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~  402 (696)
                      +-||+|+.|++.-..                  .|++  .+++.+              +...+.||.+.+|.+.+   .
T Consensus       363 g~Dg~I~~w~~p~n~------------------dp~d--s~dp~v--------------l~~~l~Ghtdavw~l~~s~~~  408 (577)
T KOG0642|consen  363 GIDGTIRCWNLPPNQ------------------DPDD--SYDPSV--------------LSGTLLGHTDAVWLLALSSTK  408 (577)
T ss_pred             ccCceeeeeccCCCC------------------Cccc--ccCcch--------------hccceeccccceeeeeecccc
Confidence            999999999987221                  1222  111111              22344578888865555   5


Q ss_pred             eeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee---cCCCceEEEEE-cCCCCEEEEEeCCccE-E
Q 005459          403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI---SQNWPVQHVAA-SKDGMFLAVAGLHGLI-L  477 (696)
Q Consensus       403 ~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~---~~~~~I~~va~-s~dG~~la~ag~dG~i-~  477 (696)
                      ..+++++.|++++.|.......                     .+|.   .|..|. ++.+ +.+-....+..+-|.. +
T Consensus       409 ~~Llscs~DgTvr~w~~~~~~~---------------------~~f~~~~e~g~Pl-svd~~ss~~a~~~~s~~~~~~~~  466 (577)
T KOG0642|consen  409 DRLLSCSSDGTVRLWEPTEESP---------------------CTFGEPKEHGYPL-SVDRTSSRPAHSLASFRFGYTSI  466 (577)
T ss_pred             cceeeecCCceEEeeccCCcCc---------------------cccCCccccCCcc-eEeeccchhHhhhhhcccccccc
Confidence            6699999999999999665443                     2222   223332 2233 2222344455555666 7


Q ss_pred             EEccCCc-eEecCCccceee---eEEEeEeeeCc--EEEEEEeecCCCeEEEEEeeCC--CCCccceeEEeecCCccEEE
Q 005459          478 YDIRQKK-WRVFGDITQEQK---IQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVM  549 (696)
Q Consensus       478 w~~~sg~-w~~f~~~~~e~~---~~v~~~~w~~~--~lv~~~~~~~~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~l~~  549 (696)
                      ++...+. .++|.....-..   -.+..++|+++  +.+.+     ..++.||+|+..  .+..+...|...+.+  +++
T Consensus       467 ~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~-----hed~~Ir~~dn~~~~~l~s~~a~~~svts--lai  539 (577)
T KOG0642|consen  467 DDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTA-----HEDRSIRFFDNKTGKILHSMVAHKDSVTS--LAI  539 (577)
T ss_pred             hhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEec-----ccCCceecccccccccchheeeccceecc--eee
Confidence            7776653 334433221111   12345777754  44443     667899999885  566777888888887  999


Q ss_pred             EccCCEEEEEEcCceEEEEEEEEec
Q 005459          550 DVYEDYILVTYRPFDVHIFHVKLFG  574 (696)
Q Consensus       550 ~~~~~~llv~~~d~~~~l~~~~~~~  574 (696)
                      .++|-+|+.+..|+.+++|+++.+.
T Consensus       540 ~~ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  540 DPNGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             cCCCceEEeecCCceeehhhccchh
Confidence            9999999999999999999987643

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=5.2e-13  Score=138.96  Aligned_cols=317  Identities=15%  Similarity=0.177  Sum_probs=186.3

Q ss_pred             CceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCc--EEEEEecCcEEEEEEEE
Q 005459           21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTK--LIAVVTSSLYLHIFKVQ   97 (696)
Q Consensus        21 ~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~--~lav~t~dg~l~l~~l~   97 (696)
                      .++-|...|.|..||+++ |++|+||.+. ++..+...       .-.+.+.+++|.|.+.  .||++.... +.|-+..
T Consensus       402 ~Vr~iSvdp~G~wlasGsdDGtvriWEi~-TgRcvr~~-------~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~  472 (733)
T KOG0650|consen  402 LVRSISVDPSGEWLASGSDDGTVRIWEIA-TGRCVRTV-------QFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPI  472 (733)
T ss_pred             eEEEEEecCCcceeeecCCCCcEEEEEee-cceEEEEE-------eecceeEEEEecCCCCceeEEEEecCc-eEEeCcc
Confidence            444466677799999996 6799999996 54433322       2346889999999887  567766555 6666666


Q ss_pred             ecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCc
Q 005459           98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS  177 (696)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~  177 (696)
                      ++.........    ..+.      +..    .          ..      ..++.+.  .|......+...        
T Consensus       473 ~G~~~e~~~t~----ell~------~~~----~----------~~------~p~~~~~--~W~~~~~~e~~~--------  512 (733)
T KOG0650|consen  473 FGDRLEVGPTK----ELLA------SAP----N----------ES------EPDAAVV--TWSRASLDELEK--------  512 (733)
T ss_pred             ccchhhhcchh----hhhh------cCC----C----------cc------CCcccce--eechhhhhhhcc--------
Confidence            55321000000    0000      000    0          00      0112222  244322111100        


Q ss_pred             ccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce---e-
Q 005459          178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---E-  253 (696)
Q Consensus       178 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~-  253 (696)
                      .++                      ....+...|++|+|+.....++.+.+++-       ...+-+.++.....   + 
T Consensus       513 ~v~----------------------~~I~~~k~i~~vtWHrkGDYlatV~~~~~-------~~~VliHQLSK~~sQ~PF~  563 (733)
T KOG0650|consen  513 GVC----------------------IVIKHPKSIRQVTWHRKGDYLATVMPDSG-------NKSVLIHQLSKRKSQSPFR  563 (733)
T ss_pred             ceE----------------------EEEecCCccceeeeecCCceEEEeccCCC-------cceEEEEecccccccCchh
Confidence            000                      01123455778887666665555555442       11122333332211   1 


Q ss_pred             cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEE
Q 005459          254 LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV  333 (696)
Q Consensus       254 ~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~v  333 (696)
                      ..+....++.|+|...+|.++++ ..|++||+.. ..+++.+..        -...|.+|+.+|.|.-|+.|+.|+.+..
T Consensus       564 kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~k-qelvKkL~t--------g~kwiS~msihp~GDnli~gs~d~k~~W  633 (733)
T KOG0650|consen  564 KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSK-QELVKKLLT--------GSKWISSMSIHPNGDNLILGSYDKKMCW  633 (733)
T ss_pred             hcCCceeEEEecCCCceEEEEec-cceEEEehhH-HHHHHHHhc--------CCeeeeeeeecCCCCeEEEecCCCeeEE
Confidence            23345567999999999988876 5899999987 666665554        4556999999999999999999999999


Q ss_pred             EEccC-CeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCC
Q 005459          334 WSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSG  412 (696)
Q Consensus       334 W~~~~-~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~  412 (696)
                      +|+.- .+...+++.| ...+.+++|++.-    .++++                                    ++.|+
T Consensus       634 fDldlsskPyk~lr~H-~~avr~Va~H~ry----PLfas------------------------------------~sdDg  672 (733)
T KOG0650|consen  634 FDLDLSSKPYKTLRLH-EKAVRSVAFHKRY----PLFAS------------------------------------GSDDG  672 (733)
T ss_pred             EEcccCcchhHHhhhh-hhhhhhhhhcccc----ceeee------------------------------------ecCCC
Confidence            99853 3566777776 7778888887764    44443                                    33344


Q ss_pred             CceeeeeeecCCeEEEEecCCCCcceeEEeecCe-eeecCC----CceEEEEEcCCCCEEEEEeCCccE-EE
Q 005459          413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV-SYISQN----WPVQHVAASKDGMFLAVAGLHGLI-LY  478 (696)
Q Consensus       413 ~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~----~~I~~va~s~dG~~la~ag~dG~i-~w  478 (696)
                      ++.++.-.--.+            +.....-+|. .+.+|.    ..|..+.|.|.--+|.+||.||++ +|
T Consensus       673 tv~Vfhg~VY~D------------l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  673 TVIVFHGMVYND------------LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             cEEEEeeeeehh------------hhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            433321100000            0000001122 233453    348999999999999999999999 88

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=1.5e-12  Score=135.49  Aligned_cols=286  Identities=17%  Similarity=0.223  Sum_probs=181.0

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC--eEEEEEcCCc
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRG  330 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~--~lasg~~Dg~  330 (696)
                      .||.+.+. +++.|.|.+||+|+.||+||||.+.+ +.+++++..         .+.|.|++|+|.+.  .||++-.+. 
T Consensus       397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~~---------d~~I~~vaw~P~~~~~vLAvA~~~~-  465 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQF---------DSEIRSVAWNPLSDLCVLAVAVGEC-  465 (733)
T ss_pred             eccCCeEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEee---------cceeEEEEecCCCCceeEEEEecCc-
Confidence            68999988 99999999999999999999999999 899998886         56899999999665  666666644 


Q ss_pred             EEEEEccCC-eeEEEeecccccceecccccCCCCCCccceecc-------eeeEEEcCCC----ceEEEEecCCcceEEE
Q 005459          331 LTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-------TSMMQWDEYG----YRLYAIEEGSSERVLI  398 (696)
Q Consensus       331 v~vW~~~~~-~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg-------~~~~~W~~~~----~~l~~~~~~~~~~v~~  398 (696)
                      +.+-+..-| ++....                   ..+++.++       ..+..|....    ..-+.+.-.|...|.+
T Consensus       466 ~~ivnp~~G~~~e~~~-------------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~  526 (733)
T KOG0650|consen  466 VLIVNPIFGDRLEVGP-------------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQ  526 (733)
T ss_pred             eEEeCccccchhhhcc-------------------hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccce
Confidence            555554332 111000                   00222222       1556786541    1112233345666755


Q ss_pred             Eec---ceeeeeccCCCCc---eeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC
Q 005459          399 FSF---GKCCLNRGVSGMT---YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL  472 (696)
Q Consensus       399 ~~~---~~~~~s~~~d~~~---~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~  472 (696)
                      +..   |.++++.+.++..   .++++.....                    ...|....+-|.++.|.|.-.++.+|+.
T Consensus       527 vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s--------------------Q~PF~kskG~vq~v~FHPs~p~lfVaTq  586 (733)
T KOG0650|consen  527 VTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS--------------------QSPFRKSKGLVQRVKFHPSKPYLFVATQ  586 (733)
T ss_pred             eeeecCCceEEEeccCCCcceEEEEecccccc--------------------cCchhhcCCceeEEEecCCCceEEEEec
Confidence            555   8899998887644   3343332222                    1234445567999999999999999999


Q ss_pred             CccEEEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCC----ccceeEEeecCCcc
Q 005459          473 HGLILYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLD----QSSLLCRKSLLAKP  546 (696)
Q Consensus       473 dG~i~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~----~~~~~~~~~~~~~~  546 (696)
                      ....+||+..++.   -....+...-+..|+-+  ++.||++.     .+..+..|+.+ |.    ....+|...+.+  
T Consensus       587 ~~vRiYdL~kqel---vKkL~tg~kwiS~msihp~GDnli~gs-----~d~k~~WfDld-lsskPyk~lr~H~~avr~--  655 (733)
T KOG0650|consen  587 RSVRIYDLSKQEL---VKKLLTGSKWISSMSIHPNGDNLILGS-----YDKKMCWFDLD-LSSKPYKTLRLHEKAVRS--  655 (733)
T ss_pred             cceEEEehhHHHH---HHHHhcCCeeeeeeeecCCCCeEEEec-----CCCeeEEEEcc-cCcchhHHhhhhhhhhhh--
Confidence            8888999977542   11112233345566665  58888873     44678888764 22    223456555555  


Q ss_pred             EEEEccCCEEEEEEcCceEEEEEEEEecccCCCCCCee-EeEE-----E-EEEeecccCCCCc
Q 005459          547 IVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDL-QLST-----V-RELSIMTAKSHPA  602 (696)
Q Consensus       547 l~~~~~~~~llv~~~d~~~~l~~~~~~~~~~~~~~~~~-~~~~-----~-~~~~~~~~~~~p~  602 (696)
                      +++...-..+++++.|+++.+|+=.+-.++  ..++.+ -+-+     + .++.+.....||.
T Consensus       656 Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl--~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~  716 (733)
T KOG0650|consen  656 VAFHKRYPLFASGSDDGTVIVFHGMVYNDL--LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPR  716 (733)
T ss_pred             hhhccccceeeeecCCCcEEEEeeeeehhh--hcCCceEeeeeccCceeecccceEeecccCC
Confidence            444433344556888899999987665543  122322 1111     1 2455677778887

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.50  E-value=5e-13  Score=132.08  Aligned_cols=200  Identities=15%  Similarity=0.205  Sum_probs=151.0

Q ss_pred             cCCCCeEE-EEEcCC--CcEEEEEecCCeEEEEEccCC---------------CceeeEEeeccCCCCCCCCCCeEEEEE
Q 005459          254 LGSGDAVC-ASIAPE--QQILAVGTRRGVVELYDLAES---------------ASLIRTVSLYDWGYSMDDTGPVSCIAW  315 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~--~~~la~g~~dg~v~vw~~~~~---------------~~~~~~~~~~~~~~~~~h~g~V~~l~~  315 (696)
                      ..|.+.+. +..++-  ..+.|+=+..|.|+||++...               .+++.++.+        |.+.=..|+|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g--------hk~EGy~LdW  219 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG--------HKGEGYGLDW  219 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc--------cCccceeeec
Confidence            34556655 666654  456667778899999998641               123445555        9999999999


Q ss_pred             CCC-CCeEEEEEcCCcEEEEEccCCee---EEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCc---eE
Q 005459          316 TPD-NSAFAVGWKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY---RL  385 (696)
Q Consensus       316 spd-g~~lasg~~Dg~v~vW~~~~~~~---~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~---~l  385 (696)
                      ||- -..|++|..-+.|.+|...++.-   ...+.+| +.+|..+++||...   ..++|++   ++++||.+.+   ..
T Consensus       220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH-~~SVEDLqWSptE~---~vfaScS~DgsIrIWDiRs~~~~~~  295 (440)
T KOG0302|consen  220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGH-TKSVEDLQWSPTED---GVFASCSCDGSIRIWDIRSGPKKAA  295 (440)
T ss_pred             ccccccccccCccccceEeeeeccCceeecCcccccc-ccchhhhccCCccC---ceEEeeecCceEEEEEecCCCccce
Confidence            992 22588888889999999877642   2344565 78899999999862   5566666   9999999876   34


Q ss_pred             EEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcC
Q 005459          386 YAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK  462 (696)
Q Consensus       386 ~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~  462 (696)
                      +.+ +.|...|..+++   ...+++|+.||+.++||+.+-...                 +....|.-|+.||+++.|+|
T Consensus       296 ~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-----------------~pVA~fk~Hk~pItsieW~p  357 (440)
T KOG0302|consen  296 VST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-----------------QPVATFKYHKAPITSIEWHP  357 (440)
T ss_pred             eEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-----------------CcceeEEeccCCeeEEEecc
Confidence            444 788888888887   336899999999999999875542                 23568899999999999998


Q ss_pred             C-CCEEEEEeCCccE-EEEccCC
Q 005459          463 D-GMFLAVAGLHGLI-LYDIRQK  483 (696)
Q Consensus       463 d-G~~la~ag~dG~i-~w~~~sg  483 (696)
                      . ...+|++|.|..+ +||+...
T Consensus       358 ~e~s~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  358 HEDSVIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             ccCceEEeccCCCcEEEEEeecc
Confidence            5 4578889999999 9998764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.50  E-value=5.5e-11  Score=125.66  Aligned_cols=233  Identities=13%  Similarity=0.154  Sum_probs=133.7

Q ss_pred             EccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEe-cCcEEEEEEEEecCcccccCCCCCCCcee
Q 005459           37 ASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQITEKSIQIGGKQPSGLFF  115 (696)
Q Consensus        37 ~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t-~dg~l~l~~l~~~~~~~~~~~~~~~~~~~  115 (696)
                      ..+++|.+|+.. ....+....+    +...+....++++||+++|++++ .++.|.+|+++ +......          
T Consensus         9 ~~~~~I~~~~~~-~~g~l~~~~~----~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~~----------   72 (330)
T PRK11028          9 PESQQIHVWNLN-HEGALTLLQV----VDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALTF----------   72 (330)
T ss_pred             CCCCCEEEEEEC-CCCceeeeeE----EecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceEE----------
Confidence            357899999995 2222222221    22234556799999999988765 47889999986 2211100          


Q ss_pred             eeeeEEEeeeccccccceeEEEeeeCCCeEEEEec-CCcEEEEecCCccccceeeccCCCCCcccccccccCCCCccccc
Q 005459          116 IKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD  194 (696)
Q Consensus       116 ~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~-~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~  194 (696)
                             .......+ ...-.++.++++.++++.. ++.+..++.+........                          
T Consensus        73 -------~~~~~~~~-~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~--------------------------  118 (330)
T PRK11028         73 -------AAESPLPG-SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP--------------------------  118 (330)
T ss_pred             -------eeeecCCC-CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc--------------------------
Confidence                   01111111 1122356677888888764 677777655421100000                          


Q ss_pred             CCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEee-ccCCceeeeeeeccee----------cCCCCeEEEE
Q 005459          195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKIDKE----------LGSGDAVCAS  263 (696)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~-~d~~~~~~~~~~~~~~----------~~~~~~v~v~  263 (696)
                                      +..+... .....++++|||+.+++.. .++.+.+|+......+          .....+-.++
T Consensus       119 ----------------~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~  181 (330)
T PRK11028        119 ----------------IQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMV  181 (330)
T ss_pred             ----------------eeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEE
Confidence                            0000000 0112355789998776544 5688999988642211          1112334499


Q ss_pred             EcCCCcEEEEEec-CCeEEEEEccCC-Cc--eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEccC
Q 005459          264 IAPEQQILAVGTR-RGVVELYDLAES-AS--LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSG  338 (696)
Q Consensus       264 ~sp~~~~la~g~~-dg~v~vw~~~~~-~~--~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~~~  338 (696)
                      |+|+++++.++.. +++|.+|+++.. ++  .+.++..  .+....+......+.++|||++|+++.+ ++.|.+|++..
T Consensus       182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        182 FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM--MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec--CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence            9999999988877 899999999842 22  2233322  1111112223457999999999998854 67888888743

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.49  E-value=4.8e-12  Score=130.12  Aligned_cols=125  Identities=18%  Similarity=0.301  Sum_probs=95.0

Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeec--ceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKI--DKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG  301 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~v-~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~  301 (696)
                      .++|||.-+++.+.|+.+++|.-..-  ..+.....++ |++|.|+.+-++. |..+.+.+=.+.. ...+-.++.    
T Consensus       111 RW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~-c~g~h~~IKpL~~-n~k~i~WkA----  184 (737)
T KOG1524|consen  111 RWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVF-CQGGHISIKPLAA-NSKIIRWRA----  184 (737)
T ss_pred             ccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEE-ecCCeEEEeeccc-ccceeEEec----
Confidence            47899999999999999999984321  0112234455 5999999887766 4566777777665 344455777    


Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCC
Q 005459          302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN  361 (696)
Q Consensus       302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~  361 (696)
                          |.|-|.++.|+|....+++|++|-..++||.+|..+..+-. | ..++++++|.|+
T Consensus       185 ----HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~-~-ey~ITSva~npd  238 (737)
T KOG1524|consen  185 ----HDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAA-E-EYAITSVAFNPE  238 (737)
T ss_pred             ----cCcEEEEeecCccccceeecCCceeEEeecccCcccccCCh-h-ccceeeeeeccc
Confidence                99999999999999999999999999999999987664432 2 456777777776

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.49  E-value=8.4e-13  Score=138.49  Aligned_cols=239  Identities=14%  Similarity=0.167  Sum_probs=155.9

Q ss_pred             ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeE--EeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcC
Q 005459          253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRT--VSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS  328 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~--~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~D  328 (696)
                      +..|..++. +.|-|...+|++++-|.++++||+.. .++...  +.+        |++.|.+++|.| |...|++|+.|
T Consensus        96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~-s~l~G~~~~~G--------H~~SvkS~cf~~~n~~vF~tGgRD  166 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT-SRLVGGRLNLG--------HTGSVKSECFMPTNPAVFCTGGRD  166 (720)
T ss_pred             cccccceeEeeccCCCceeEEEccCCceeeeeeecc-ceeecceeecc--------cccccchhhhccCCCcceeeccCC
Confidence            467999999 99999888999999999999999998 665544  555        999999999999 45588999999


Q ss_pred             CcEEEEEccCCe--------------------eEEEe-------ecccccceec---ccccCCCCCCccceecce----e
Q 005459          329 RGLTVWSVSGCR--------------------LMSTI-------RQISLSSISS---PIVKPNQDCKYEPLMSGT----S  374 (696)
Q Consensus       329 g~v~vW~~~~~~--------------------~~~~l-------~~~~~~~v~~---~~~sp~~~~~~~~l~sg~----~  374 (696)
                      |.+.|||+.-..                    ....+       +.+ ...+.+   +.+..|.    ..+++++    .
T Consensus       167 g~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~-s~ti~ssvTvv~fkDe----~tlaSaga~D~~  241 (720)
T KOG0321|consen  167 GEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA-SNTIFSSVTVVLFKDE----STLASAGAADST  241 (720)
T ss_pred             CcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc-cCceeeeeEEEEEecc----ceeeeccCCCcc
Confidence            999999983221                    00000       011 122222   2233343    5666655    8


Q ss_pred             eEEEcCCCceEEEEec--------CC---cceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeE
Q 005459          375 MMQWDEYGYRLYAIEE--------GS---SERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL  440 (696)
Q Consensus       375 ~~~W~~~~~~l~~~~~--------~~---~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~  440 (696)
                      +++||+..........        .|   .-.+  +.++- |..+...|.|++|.+|++..-...               
T Consensus       242 iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s---------------  306 (720)
T KOG0321|consen  242 IKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS---------------  306 (720)
T ss_pred             eEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC---------------
Confidence            9999997643322211        11   1122  33333 788888888999999998765543               


Q ss_pred             EeecCeeeecCC-Cce-EEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC--cEEEEEEee
Q 005459          441 HLNLPVSYISQN-WPV-QHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYI  515 (696)
Q Consensus       441 ~~~~~~~~~~~~-~~I-~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~  515 (696)
                         ....|.++. ..+ ..-..||||.++++|+.|+.+ +|.+.+-.-..-  ...-+.+.|..++|..  ..-|++|  
T Consensus       307 ---P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~--~l~Ght~eVt~V~w~pS~~t~v~Tc--  379 (720)
T KOG0321|consen  307 ---PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA--LLLGHTREVTTVRWLPSATTPVATC--  379 (720)
T ss_pred             ---chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh--hhhCcceEEEEEeeccccCCCceee--
Confidence               112222321 111 124679999999999999999 999876432211  1112345688889963  3334444  


Q ss_pred             cCCCeEEEEEeeCC
Q 005459          516 DSSNTYELLFYPRY  529 (696)
Q Consensus       516 ~~~~~~~lr~y~~~  529 (696)
                        +++..+++|...
T Consensus       380 --SdD~~~kiW~l~  391 (720)
T KOG0321|consen  380 --SDDFRVKIWRLS  391 (720)
T ss_pred             --ccCcceEEEecc
Confidence              455778888765

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=3.1e-11  Score=131.76  Aligned_cols=338  Identities=13%  Similarity=0.141  Sum_probs=218.7

Q ss_pred             eEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcc
Q 005459           23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS  102 (696)
Q Consensus        23 ~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~  102 (696)
                      ..|.+++.|.++..+.+..+.+|++.++....+.+.   ....+--..++.++||.++++|++-.||.|++|.--..+. 
T Consensus       164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~---~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-  239 (792)
T KOG1963|consen  164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRD---ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-  239 (792)
T ss_pred             ccEEEcCCceEEEEEEeeeEEEEEecccceeeccch---hhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-
Confidence            346799999999999999999999964332222221   2222222257899999999999999999999997421000 


Q ss_pred             cccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccc
Q 005459          103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS  182 (696)
Q Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~  182 (696)
                                                                     .+-+..+++|....                   
T Consensus       240 -----------------------------------------------~~~t~t~lHWH~~~-------------------  253 (792)
T KOG1963|consen  240 -----------------------------------------------DSETCTLLHWHHDE-------------------  253 (792)
T ss_pred             -----------------------------------------------ccccceEEEecccc-------------------
Confidence                                                           00122334554211                   


Q ss_pred             cccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeE
Q 005459          183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV  260 (696)
Q Consensus       183 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v  260 (696)
                                                  |.+          ++|++||..+++++..+.+-+|...++++.  +--..++
T Consensus       254 ----------------------------V~~----------L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I  295 (792)
T KOG1963|consen  254 ----------------------------VNS----------LSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPI  295 (792)
T ss_pred             ----------------------------cce----------eEEecCCceEeecccceEEEEEeecCCCcccccccCCee
Confidence                                        222          447888888888888888888888766532  3345566


Q ss_pred             E-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC---CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459          261 C-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS---MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       261 ~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~---~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~  336 (696)
                      . +.+|||+.+.++.++|..|.+-...+ .....++.+..++.+   ....+-.+.++++|--+.++-.+..|.|..+|+
T Consensus       296 ~~i~vS~ds~~~sl~~~DNqI~li~~~d-l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl  374 (792)
T KOG1963|consen  296 LHIVVSPDSDLYSLVLEDNQIHLIKASD-LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDL  374 (792)
T ss_pred             EEEEEcCCCCeEEEEecCceEEEEeccc-hhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEec
Confidence            6 99999999999999999999998866 555556666444321   224566788999996677777788899999999


Q ss_pred             cCCeeEEEeec----cc------ccceecccccCCCCCCccceecc------------e-eeEEEcCCC----ceEEE-E
Q 005459          337 SGCRLMSTIRQ----IS------LSSISSPIVKPNQDCKYEPLMSG------------T-SMMQWDEYG----YRLYA-I  388 (696)
Q Consensus       337 ~~~~~~~~l~~----~~------~~~v~~~~~sp~~~~~~~~l~sg------------~-~~~~W~~~~----~~l~~-~  388 (696)
                      .+...+..+.-    +.      .-.+++++.+..+    ..+++.            - ..++|-...    ..|.. +
T Consensus       375 ~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g----s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I  450 (792)
T KOG1963|consen  375 YTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG----SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI  450 (792)
T ss_pred             cccceeeeEEEEeecccCCcceeEEeeeeehhhccc----eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE
Confidence            87766554431    11      1234555555544    333222            1 677785432    22222 2


Q ss_pred             ecCCcceE--EEEe-c--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCC
Q 005459          389 EEGSSERV--LIFS-F--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD  463 (696)
Q Consensus       389 ~~~~~~~v--~~~~-~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~d  463 (696)
                      ...|...+  .++. +  ...+++++.|+.+++|.+...++.       ...+..|....+ ..|  |+.|+.+++||.|
T Consensus       451 ~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~-------~k~~s~W~c~~i-~sy--~k~~i~a~~fs~d  520 (792)
T KOG1963|consen  451 NNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI-------YKKSSNWTCKAI-GSY--HKTPITALCFSQD  520 (792)
T ss_pred             ecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc-------CcCccceEEeee-ecc--ccCcccchhhcCC
Confidence            24566555  3332 2  336899999999999997544331       011124532222 224  7889999999999


Q ss_pred             CCEEEEEeCCccEEEEccCC
Q 005459          464 GMFLAVAGLHGLILYDIRQK  483 (696)
Q Consensus       464 G~~la~ag~dG~i~w~~~sg  483 (696)
                      |..||++-.+-..+||..+.
T Consensus       521 Gslla~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  521 GSLLAVSFDDTITIWDYDTK  540 (792)
T ss_pred             CcEEEEecCCEEEEecCCCh
Confidence            98887776544449999874

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.7e-13  Score=152.92  Aligned_cols=225  Identities=16%  Similarity=0.181  Sum_probs=159.2

Q ss_pred             EEEEEecCCeEEEEEccCC--C---ceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEEcCCcEEEEEccCCeeEE
Q 005459          270 ILAVGTRRGVVELYDLAES--A---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMS  343 (696)
Q Consensus       270 ~la~g~~dg~v~vw~~~~~--~---~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~~Dg~v~vW~~~~~~~~~  343 (696)
                      +||.|++||.|.+||....  +   ..+.+...        |+|+|+.+.|+|.+. .||+|+.||.|.|||+..-..-.
T Consensus        82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~--------h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~  153 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSK--------HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPF  153 (1049)
T ss_pred             eeeccccCCceEEecchhhccCcchHHHhhhcc--------cCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCC
Confidence            5999999999999998751  1   23444455        999999999999655 99999999999999997644333


Q ss_pred             Eee-cccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcce----EEEEec--ceeeeeccCCC-
Q 005459          344 TIR-QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSER----VLIFSF--GKCCLNRGVSG-  412 (696)
Q Consensus       344 ~l~-~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~----v~~~~~--~~~~~s~~~d~-  412 (696)
                      +.. ..-.+.|.+++|...-   ...|++++   ...+||++..+.+..+..+..+    ++++++  ...++.++.|. 
T Consensus       154 ~~~~~~~~~eI~~lsWNrkv---qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~  230 (1049)
T KOG0307|consen  154 TPGSQAPPSEIKCLSWNRKV---SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDS  230 (1049)
T ss_pred             CCCCCCCcccceEeccchhh---hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCC
Confidence            332 1124567888875543   15566666   7899999988777766555442    377777  55555555443 


Q ss_pred             --CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC-CEEEEEeCCccE-EEEccCCceEec
Q 005459          413 --MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKKWRVF  488 (696)
Q Consensus       413 --~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG-~~la~ag~dG~i-~w~~~sg~w~~f  488 (696)
                        .+.+||+.....                   ....|.+|+-.|.++.|++.+ ++|++.|+|+.+ +|+.++++-  .
T Consensus       231 ~PviqlWDlR~ass-------------------P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv--l  289 (1049)
T KOG0307|consen  231 APVIQLWDLRFASS-------------------PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV--L  289 (1049)
T ss_pred             CceeEeecccccCC-------------------chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE--e
Confidence              678999888776                   135677999999999999876 899999999999 999999852  2


Q ss_pred             CCccceeeeEEEeEeeeCc--EEEEEEeecCCCeEEEEEeeCCCC
Q 005459          489 GDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRYHL  531 (696)
Q Consensus       489 ~~~~~e~~~~v~~~~w~~~--~lv~~~~~~~~~~~~lr~y~~~~l  531 (696)
                      +...- +.-=|..+.|.+.  .++++.+    -++.|.+|++..+
T Consensus       290 ~~~p~-~~nW~fdv~w~pr~P~~~A~as----fdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  290 GELPA-QGNWCFDVQWCPRNPSVMAAAS----FDGKISIYSLQGT  329 (1049)
T ss_pred             eecCC-CCcceeeeeecCCCcchhhhhe----eccceeeeeeecC
Confidence            21111 1111566788743  3444433    3468999998733

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=6.9e-12  Score=117.24  Aligned_cols=289  Identities=13%  Similarity=0.057  Sum_probs=173.4

Q ss_pred             cccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEE
Q 005459           67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML  146 (696)
Q Consensus        67 ~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~ll  146 (696)
                      +-.+.+-+|||-+++|+++..+|.|-++.+..-.....    .++++         ..-++...+++++..+...++.++
T Consensus        10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa----~~~gk---------~~iv~eqahdgpiy~~~f~d~~Ll   76 (325)
T KOG0649|consen   10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA----EPPGK---------LKIVPEQAHDGPIYYLAFHDDFLL   76 (325)
T ss_pred             HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc----CCCCC---------cceeeccccCCCeeeeeeehhhee
Confidence            45566788999999999999999999999864322111    11110         111223678888988887766666


Q ss_pred             EEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEE
Q 005459          147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL  226 (696)
Q Consensus       147 v~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  226 (696)
                      +|. ||.|+-|.|..+....-   +++.=   -..+|...+                 ...--.|..          +++
T Consensus        77 s~g-dG~V~gw~W~E~~es~~---~K~lw---e~~~P~~~~-----------------~~evPeINa----------m~l  122 (325)
T KOG0649|consen   77 SGG-DGLVYGWEWNEEEESLA---TKRLW---EVKIPMQVD-----------------AVEVPEINA----------MWL  122 (325)
T ss_pred             ecc-CceEEEeeehhhhhhcc---chhhh---hhcCccccC-----------------cccCCccce----------eEe
Confidence            655 59999999986654210   01100   000000000                 000111333          445


Q ss_pred             EeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC-
Q 005459          227 YSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG-  301 (696)
Q Consensus       227 s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~-  301 (696)
                      .|...-++.++.|+.+..||+++++.   ..||++-+. ++--.....|.+|++||++|+||.++ ++++..+...+.+ 
T Consensus       123 dP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~  201 (325)
T KOG0649|consen  123 DPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPN  201 (325)
T ss_pred             ccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEeccccChh
Confidence            55544455556888889999988753   389999998 55545666788999999999999998 8888877765432 


Q ss_pred             CCCCCCCC-eEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEEE
Q 005459          302 YSMDDTGP-VSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQW  378 (696)
Q Consensus       302 ~~~~h~g~-V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W  378 (696)
                      ....|-|. |-+++-+.  ..|+.|+. ..+.+|.+....+.+++.-.  ..+..+.|..+     ..++.|-  .+-.|
T Consensus       202 ~lRp~~g~wigala~~e--dWlvCGgG-p~lslwhLrsse~t~vfpip--a~v~~v~F~~d-----~vl~~G~g~~v~~~  271 (325)
T KOG0649|consen  202 LLRPDWGKWIGALAVNE--DWLVCGGG-PKLSLWHLRSSESTCVFPIP--ARVHLVDFVDD-----CVLIGGEGNHVQSY  271 (325)
T ss_pred             hcCcccCceeEEEeccC--ceEEecCC-CceeEEeccCCCceEEEecc--cceeEeeeecc-----eEEEeccccceeee
Confidence            12224443 66666554  47777766 78999999988887777642  33555666443     2333331  55556


Q ss_pred             cCCCceEEEEecCCcce----EEEEecceeeeeccCCCCc
Q 005459          379 DEYGYRLYAIEEGSSER----VLIFSFGKCCLNRGVSGMT  414 (696)
Q Consensus       379 ~~~~~~l~~~~~~~~~~----v~~~~~~~~~~s~~~d~~~  414 (696)
                      ... +.+-.........    .+..+|-|.+..++.+..+
T Consensus       272 ~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~  310 (325)
T KOG0649|consen  272 TLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKL  310 (325)
T ss_pred             eec-cEEEEeccCCccceeeecccCCceEEEEecccceee
Confidence            543 3333333222211    2444455655555555444

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.47  E-value=1.9e-12  Score=126.05  Aligned_cols=239  Identities=13%  Similarity=0.152  Sum_probs=161.1

Q ss_pred             CCCCeEE-EEEcCC----CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEcC
Q 005459          255 GSGDAVC-ASIAPE----QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKS  328 (696)
Q Consensus       255 ~~~~~v~-v~~sp~----~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~D  328 (696)
                      +|..... ++|+-|    ..++|+|+.-|.|||.|+.. .+....+.+        |.+.|+.|.|.|+ .+++.+|+.|
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~-~~~~~~~~g--------hG~sINeik~~p~~~qlvls~SkD  157 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-GQCSKNYRG--------HGGSINEIKFHPDRPQLVLSASKD  157 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch-hhhccceec--------cCccchhhhcCCCCCcEEEEecCC
Confidence            3555554 777764    45899999999999999988 788888888        9999999999995 4789999999


Q ss_pred             CcEEEEEccCCeeEEEeec--ccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEE---------------
Q 005459          329 RGLTVWSVSGCRLMSTIRQ--ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI---------------  388 (696)
Q Consensus       329 g~v~vW~~~~~~~~~~l~~--~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~---------------  388 (696)
                      .+||+|++++..|+..+.|  .|...|-++.|++++    +.++|+.   ++++|++...+....               
T Consensus       158 ~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g----d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~p  233 (385)
T KOG1034|consen  158 HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG----DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRP  233 (385)
T ss_pred             ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC----CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCc
Confidence            9999999999999999976  347889999999999    8888887   999999874322111               


Q ss_pred             -------------ecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCc
Q 005459          389 -------------EEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP  454 (696)
Q Consensus       389 -------------~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  454 (696)
                                   ..-|...|=+..+ +..++|-+-++.+..|...+-++++--....+.....      ...|.-.+..
T Consensus       234 fpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti------~~~~~~~~c~  307 (385)
T KOG1034|consen  234 FPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTI------LGEFDYPMCD  307 (385)
T ss_pred             CCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceee------eeEeccCccc
Confidence                         1123333333334 7788888888889888874433321100000000001      1122222334


Q ss_pred             eEEE--EEcCCCCEEEEEeCCccE-EEEccCCceEecCCcccee-eeEEEeEeee--CcEEEEE
Q 005459          455 VQHV--AASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQ-KIQSKGLLWL--GKIIVVC  512 (696)
Q Consensus       455 I~~v--a~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~-~~~v~~~~w~--~~~lv~~  512 (696)
                      |+.+  +|+|-++.||.|...|.+ +||+....=.......+.+ .-.|+..+..  +.+|+..
T Consensus       308 iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~v  371 (385)
T KOG1034|consen  308 IWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLV  371 (385)
T ss_pred             eEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEE
Confidence            5555  456778999999999999 9999765321111111222 2236666664  4455554

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.47  E-value=1.4e-12  Score=136.82  Aligned_cols=248  Identities=15%  Similarity=0.105  Sum_probs=161.4

Q ss_pred             CcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce-----ecCCCCeEE-EEEcCC-CcEEEEEe
Q 005459          203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAVC-ASIAPE-QQILAVGT  275 (696)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~v~-v~~sp~-~~~la~g~  275 (696)
                      .+..|...|.++++          -|-...+++.+.|.+++.||+...+.     ..||...+. ++|.|. -..+++|+
T Consensus        95 ~~~aH~nAifDl~w----------apge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGg  164 (720)
T KOG0321|consen   95 KPLAHKNAIFDLKW----------APGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGG  164 (720)
T ss_pred             ccccccceeEeecc----------CCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeecc
Confidence            34466777888764          34233566677899999999876543     268999998 999995 56899999


Q ss_pred             cCCeEEEEEccCCCc--------eee-EEee-------c--cCCCCCCCCCCeEE---EEECCCCCeEEEEEc-CCcEEE
Q 005459          276 RRGVVELYDLAESAS--------LIR-TVSL-------Y--DWGYSMDDTGPVSC---IAWTPDNSAFAVGWK-SRGLTV  333 (696)
Q Consensus       276 ~dg~v~vw~~~~~~~--------~~~-~~~~-------~--~~~~~~~h~g~V~~---l~~spdg~~lasg~~-Dg~v~v  333 (696)
                      .||.|.|||++..+.        .+. ..++       .  ...-.-+|.+.+.+   +-+.-|...||+++. |++|+|
T Consensus       165 RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKV  244 (720)
T KOG0321|consen  165 RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKV  244 (720)
T ss_pred             CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEE
Confidence            999999999976320        000 0000       0  00001135555555   666778899999988 999999


Q ss_pred             EEccCCeeEEEee--------ccc--ccceecccccCCCCCCccc-eecce--eeEEEcCCCce--EEEEecCCcc---e
Q 005459          334 WSVSGCRLMSTIR--------QIS--LSSISSPIVKPNQDCKYEP-LMSGT--SMMQWDEYGYR--LYAIEEGSSE---R  395 (696)
Q Consensus       334 W~~~~~~~~~~l~--------~~~--~~~v~~~~~sp~~~~~~~~-l~sg~--~~~~W~~~~~~--l~~~~~~~~~---~  395 (696)
                      ||+..........        -|.  ...+.++..+..|    .+ +++..  ++..|+..+..  ......++..   .
T Consensus       245 WDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG----t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~  320 (720)
T KOG0321|consen  245 WDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG----TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFY  320 (720)
T ss_pred             EeecccccccccCCCcccCccCcccceeeeEEEEecCCC----CeEEEEecCCcEEEEeccccCcCchhhccCcccceee
Confidence            9996554322211        010  0113333333333    33 33333  88889886543  2222223221   2


Q ss_pred             E-EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC-CEEEEEeC
Q 005459          396 V-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGL  472 (696)
Q Consensus       396 v-~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG-~~la~ag~  472 (696)
                      + ..+++ +.++++++.|....+|.+..-+.                   -|..|.+|.-.|.+++|.|.- .-+|++++
T Consensus       321 vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~-------------------~~~~l~Ght~eVt~V~w~pS~~t~v~TcSd  381 (720)
T KOG0321|consen  321 VKSELSPDDCSLLSGSSDEQAYIWVVSSPEA-------------------PPALLLGHTREVTTVRWLPSATTPVATCSD  381 (720)
T ss_pred             eeeecCCCCceEeccCCCcceeeeeecCccC-------------------ChhhhhCcceEEEEEeeccccCCCceeecc
Confidence            2 44566 88999999999999999887766                   366788999999999997743 24666699


Q ss_pred             CccE-EEEccCC
Q 005459          473 HGLI-LYDIRQK  483 (696)
Q Consensus       473 dG~i-~w~~~sg  483 (696)
                      |-.+ +|++..+
T Consensus       382 D~~~kiW~l~~~  393 (720)
T KOG0321|consen  382 DFRVKIWRLSNG  393 (720)
T ss_pred             CcceEEEeccCc
Confidence            9999 9999655

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=2e-10  Score=125.47  Aligned_cols=285  Identities=11%  Similarity=0.133  Sum_probs=166.8

Q ss_pred             eEEEEEcCCCcEEEEEecCCeEEEEEccC---CCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459          259 AVCASIAPEQQILAVGTRRGVVELYDLAE---SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS  335 (696)
Q Consensus       259 ~v~v~~sp~~~~la~g~~dg~v~vw~~~~---~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~  335 (696)
                      ..|+++||.++++|+|-.||.|.+|.--.   .....+.++=        |...|.+++||+||.+|.||+..+.+.+|.
T Consensus       208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW--------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq  279 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW--------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQ  279 (792)
T ss_pred             ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe--------cccccceeEEecCCceEeecccceEEEEEe
Confidence            45699999999999999999999997432   1233456666        899999999999999999999999999999


Q ss_pred             ccCCeeEEEeecccccceecccccCCCCCCcccee--cce-eeEEEcCCCceEEEEecC---C-------cc---eEEEE
Q 005459          336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM--SGT-SMMQWDEYGYRLYAIEEG---S-------SE---RVLIF  399 (696)
Q Consensus       336 ~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~--sg~-~~~~W~~~~~~l~~~~~~---~-------~~---~v~~~  399 (696)
                      +.+++ -.-|+.- .+.+..+.++||+    +...  .+. .+.+-....-++..+..+   .       ..   ..+++
T Consensus       280 ~~T~~-kqfLPRL-gs~I~~i~vS~ds----~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i  353 (792)
T KOG1963|consen  280 LETGK-KQFLPRL-GSPILHIVVSPDS----DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI  353 (792)
T ss_pred             ecCCC-ccccccc-CCeeEEEEEcCCC----CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEE
Confidence            98876 3334433 3568889999987    2221  111 121111111111111111   0       11   23667


Q ss_pred             ec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC------
Q 005459          400 SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL------  472 (696)
Q Consensus       400 ~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~------  472 (696)
                      ++ .+.++-.+..+.++++++.....- +-++-.+..        .......+.-+|+.++.+..|.++|++-.      
T Consensus       354 dpr~~~~vln~~~g~vQ~ydl~td~~i-~~~~v~~~n--------~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~  424 (792)
T KOG1963|consen  354 DPRTNSLVLNGHPGHVQFYDLYTDSTI-YKLQVCDEN--------YSDGDVNIQVGITAVARSRFGSWMATLEARIDKFN  424 (792)
T ss_pred             cCCCCceeecCCCceEEEEecccccee-eeEEEEeec--------ccCCcceeEEeeeeehhhccceEEEEeeeeehhhh
Confidence            77 667777788889999987665541 111110000        00011123346889999999999998743      


Q ss_pred             --CccE---EEE--ccCCceEecCC--ccceeeeEEEeEee--eCcEEEEEEeecCCCeEEEEEeeCC---CC---Cccc
Q 005459          473 --HGLI---LYD--IRQKKWRVFGD--ITQEQKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPRY---HL---DQSS  535 (696)
Q Consensus       473 --dG~i---~w~--~~sg~w~~f~~--~~~e~~~~v~~~~w--~~~~lv~~~~~~~~~~~~lr~y~~~---~l---~~~~  535 (696)
                        ||.+   .|-  -+++.|.+-..  ..|+..+.+..+.=  ..+..+++     +.+..+++|...   +.   +...
T Consensus       425 ~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta-----~~dg~~KiW~~~~~~n~~k~~s~W  499 (792)
T KOG1963|consen  425 FFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTA-----SVDGDFKIWVFTDDSNIYKKSSNW  499 (792)
T ss_pred             ccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEe-----ccCCeEEEEEEecccccCcCccce
Confidence              3332   443  34445655332  22343333332221  12233343     455678888762   11   1111


Q ss_pred             e----eEEeecCCccEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459          536 L----LCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL  572 (696)
Q Consensus       536 ~----~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~  572 (696)
                      .    .+-+..+.....++-+| .+|+.+.+..+.+|++.-
T Consensus       500 ~c~~i~sy~k~~i~a~~fs~dG-slla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  500 TCKAIGSYHKTPITALCFSQDG-SLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             EEeeeeccccCcccchhhcCCC-cEEEEecCCEEEEecCCC
Confidence            1    11123344334555444 666667789999999865

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.45  E-value=1.7e-10  Score=124.21  Aligned_cols=304  Identities=20%  Similarity=0.265  Sum_probs=203.9

Q ss_pred             EEeCCcEEEEeeccCCceeeeeeecc-ee---cC-CCCeEE-EEE-cCCCc-EEEEEec-CCeEEEEEccCCCceeeEEe
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKID-KE---LG-SGDAVC-ASI-APEQQ-ILAVGTR-RGVVELYDLAESASLIRTVS  296 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~-~~---~~-~~~~v~-v~~-sp~~~-~la~g~~-dg~v~vw~~~~~~~~~~~~~  296 (696)
                      +.+++..++..+.++.+.+|+..... ..   .+ +...+. +.+ ++++. .++..+. |+.+++|+..........+.
T Consensus        73 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  152 (466)
T COG2319          73 FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE  152 (466)
T ss_pred             ECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEe
Confidence            56667777766677778888876553 21   22 221333 555 88888 5555444 99999999875335666677


Q ss_pred             eccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEccCCeeEEEeecccccceecccccCCCCCCcc-ceecce-
Q 005459          297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLMSGT-  373 (696)
Q Consensus       297 ~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~-~l~sg~-  373 (696)
                      .        |...|..++|+|++..+++++. |+.+++|++........+.+| ...+..++++|++    . .++++. 
T Consensus       153 ~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~~~~~~~~  219 (466)
T COG2319         153 G--------HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH-TDPVSSLAFSPDG----GLLIASGSS  219 (466)
T ss_pred             c--------CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC-CCceEEEEEcCCc----ceEEEEecC
Confidence            7        9999999999999999999986 999999999998888888886 7789999999887    4 444422 


Q ss_pred             --eeEEEcCCCceEEE-EecCCcce-EEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee
Q 005459          374 --SMMQWDEYGYRLYA-IEEGSSER-VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY  448 (696)
Q Consensus       374 --~~~~W~~~~~~l~~-~~~~~~~~-v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  448 (696)
                        .+.+|+...+..+. ...+|... +..+++ +..+++++.|+.+++|+.......                   ...+
T Consensus       220 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-------------------~~~~  280 (466)
T COG2319         220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL-------------------LRTL  280 (466)
T ss_pred             CCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcE-------------------EEEE
Confidence              77799888777777 57777666 445666 567889999999999998765541                   1122


Q ss_pred             ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCC-ccceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEE
Q 005459          449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELL  524 (696)
Q Consensus       449 ~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~-~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr  524 (696)
                      .+|..+|.++.|+|++..+++++.|+.+ +|+..+.+...... ..++.  .+..+.|..  ..++.+.    ..+..++
T Consensus       281 ~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~d~~~~  354 (466)
T COG2319         281 SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSLLVSGG----SDDGTIR  354 (466)
T ss_pred             ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCEEEEee----cCCCcEE
Confidence            5678899999999999999999999888 99888775332221 12222  345555522  2344432    2226777


Q ss_pred             EeeCCCCCccceeEEeecCC--ccEEEEccCCEEEE--EEcCceEEEEEEEE
Q 005459          525 FYPRYHLDQSSLLCRKSLLA--KPIVMDVYEDYILV--TYRPFDVHIFHVKL  572 (696)
Q Consensus       525 ~y~~~~l~~~~~~~~~~~~~--~~l~~~~~~~~llv--~~~d~~~~l~~~~~  572 (696)
                      +|+......  ..... ...  ..+.+.. . ....  ...+..+.+|+...
T Consensus       355 ~~~~~~~~~--~~~~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~  401 (466)
T COG2319         355 LWDLRTGKP--LKTLE-GHSNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLST  401 (466)
T ss_pred             eeecCCCce--eEEec-CCceEEEEEECC-C-CCEEEEecCCCceEEEeccc
Confidence            787752211  11111 111  1233333 3 2222  35667788887653

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=1.6e-13  Score=153.07  Aligned_cols=228  Identities=18%  Similarity=0.232  Sum_probs=171.2

Q ss_pred             EEEEeeccCCceeeeeeec---ce------ecCCCCeEE-EEEcCCCc-EEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459          232 LMSCSVSKKGLKLAEFIKI---DK------ELGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDW  300 (696)
Q Consensus       232 ~~~~~~~d~~~~~~~~~~~---~~------~~~~~~~v~-v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~  300 (696)
                      +++.+..||.+.+|+....   ..      ...|.+.|. +.||+... +||+|..||.|.|||+........ ..    
T Consensus        82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~-~~----  156 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFT-PG----  156 (1049)
T ss_pred             eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCC-CC----
Confidence            3666668888888886542   11      156899998 99999755 999999999999999987222211 11    


Q ss_pred             CCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccc-cceecccccCCCCCCccceecce----e
Q 005459          301 GYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL-SSISSPIVKPNQDCKYEPLMSGT----S  374 (696)
Q Consensus       301 ~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~-~~v~~~~~sp~~~~~~~~l~sg~----~  374 (696)
                        ...-...|.+|+|+. ....||+|+.+|.+.|||+...+.+-.+..++. ..++.++|+|+.. +.-.++++.    .
T Consensus       157 --~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a-Tql~~As~dd~~Pv  233 (1049)
T KOG0307|consen  157 --SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA-TQLLVASGDDSAPV  233 (1049)
T ss_pred             --CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc-eeeeeecCCCCCce
Confidence              112467899999997 566889999999999999998877777766533 3478899999973 222333433    7


Q ss_pred             eEEEcCCC-ceEEEEecCCcceEEEEec----ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee
Q 005459          375 MMQWDEYG-YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI  449 (696)
Q Consensus       375 ~~~W~~~~-~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  449 (696)
                      +..||.+. ...+.++++|...|+.+++    ...++|++.|+.+.+|+..+++.                    ...+-
T Consensus       234 iqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv--------------------l~~~p  293 (1049)
T KOG0307|consen  234 IQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV--------------------LGELP  293 (1049)
T ss_pred             eEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE--------------------eeecC
Confidence            88999763 3345566799999988887    46789999999999999888764                    33333


Q ss_pred             cCCCceEEEEEcCCCC-EEEEEeCCccE-EEEccCCceEe
Q 005459          450 SQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKWRV  487 (696)
Q Consensus       450 ~~~~~I~~va~s~dG~-~la~ag~dG~i-~w~~~sg~w~~  487 (696)
                      .....+..+.|+|..- .+|+++-||.| +|++.+..+..
T Consensus       294 ~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~~  333 (1049)
T KOG0307|consen  294 AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTDL  333 (1049)
T ss_pred             CCCcceeeeeecCCCcchhhhheeccceeeeeeecCCccc
Confidence            3455689999999765 89999999999 99999876554

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.45  E-value=1.6e-13  Score=147.37  Aligned_cols=226  Identities=15%  Similarity=0.242  Sum_probs=166.6

Q ss_pred             EEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeec
Q 005459          223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY  298 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~  298 (696)
                      ++++...|+.++++++|.-+++|...++.++   .||+.-+. ++++.+.-++|+++.|..|++|.+.+ +.++..+.+ 
T Consensus       195 ca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~-~~pvsvLrg-  272 (1113)
T KOG0644|consen  195 CAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD-GAPVSVLRG-  272 (1113)
T ss_pred             eeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC-CchHHHHhc-
Confidence            4567889999999999999999998887765   78998888 99999999999999999999999998 888989999 


Q ss_pred             cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc--------------CCeeEEEeeccc---------------
Q 005459          299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--------------GCRLMSTIRQIS---------------  349 (696)
Q Consensus       299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~--------------~~~~~~~l~~~~---------------  349 (696)
                             |+|+|++++|||--    +.+.||++++||..              ++.+++.+....               
T Consensus       273 -------htgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~  341 (1113)
T KOG0644|consen  273 -------HTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR  341 (1113)
T ss_pred             -------cccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence                   99999999999954    77899999999974              222333322110               


Q ss_pred             ccceecccccCCCC------C-Cccceecce---eeEEEcCCCceEEEEecCCcceEEEEec----ceeeeeccCCCCce
Q 005459          350 LSSISSPIVKPNQD------C-KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTY  415 (696)
Q Consensus       350 ~~~v~~~~~sp~~~------~-~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~  415 (696)
                      ...+..+++..+.-      . .....++..   ..+.|+..++++.....+|.+.++++.+    .+...++++|++..
T Consensus       342 n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~  421 (1113)
T KOG0644|consen  342 NHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTI  421 (1113)
T ss_pred             cchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceE
Confidence            00011111111100      0 001111111   5678999999999999999888866655    56678999999999


Q ss_pred             eeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459          416 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR  481 (696)
Q Consensus       416 ~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~  481 (696)
                      +||+..|..                   +..-+.+| ..+...+||+||+.++..-+-|.+ +....
T Consensus       422 iwdi~eg~p-------------------ik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~g  468 (1113)
T KOG0644|consen  422 IWDIWEGIP-------------------IKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTG  468 (1113)
T ss_pred             eeecccCCc-------------------ceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccC
Confidence            999887765                   11222343 456678999999999998888888 66543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.44  E-value=1.9e-10  Score=121.60  Aligned_cols=297  Identities=9%  Similarity=0.097  Sum_probs=160.5

Q ss_pred             EEEEeeccCCceeeeeee-cc--e---ecCCCCeEEEEEcCCCcEEEEEe-cCCeEEEEEccCCCceeeEEeeccCCCCC
Q 005459          232 LMSCSVSKKGLKLAEFIK-ID--K---ELGSGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSM  304 (696)
Q Consensus       232 ~~~~~~~d~~~~~~~~~~-~~--~---~~~~~~~v~v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~  304 (696)
                      ++++...++.+.+|+... ++  .   ......+..++++|++++|++++ .++.|.+|+++..+.. .......     
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~~-----   77 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAESP-----   77 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeeeec-----
Confidence            344455677788887742 21  1   11223455599999999887764 5889999999742332 2222111     


Q ss_pred             CCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEccC-Cee---EEEeecccccceecccccCCCCCCccceecceeeEEEc
Q 005459          305 DDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSG-CRL---MSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWD  379 (696)
Q Consensus       305 ~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~~~-~~~---~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~  379 (696)
                       ..+....++|+|||+.|+++.. ++.|.+|++.. +..   ...+.+  ......++++|++                 
T Consensus        78 -~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g-----------------  137 (330)
T PRK11028         78 -LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDN-----------------  137 (330)
T ss_pred             -CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCC-----------------
Confidence             2345678999999998888764 78999999863 211   111111  0111222233332                 


Q ss_pred             CCCceEEEEecCCcceEEEEecceee-eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEE
Q 005459          380 EYGYRLYAIEEGSSERVLIFSFGKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV  458 (696)
Q Consensus       380 ~~~~~l~~~~~~~~~~v~~~~~~~~~-~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v  458 (696)
                                             +.+ ++...++.+.+|++..... +....            ........ ....+.+
T Consensus       138 -----------------------~~l~v~~~~~~~v~v~d~~~~g~-l~~~~------------~~~~~~~~-g~~p~~~  180 (330)
T PRK11028        138 -----------------------RTLWVPCLKEDRIRLFTLSDDGH-LVAQE------------PAEVTTVE-GAGPRHM  180 (330)
T ss_pred             -----------------------CEEEEeeCCCCEEEEEEECCCCc-ccccC------------CCceecCC-CCCCceE
Confidence                                   222 2223345566666543111 00000            00000001 1235789


Q ss_pred             EEcCCCCEEEEEeC-CccE-EEEcc--CCceEecCCccc-eeee----EEEeEeee--CcEEEEEEeecCCCeEEEEEee
Q 005459          459 AASKDGMFLAVAGL-HGLI-LYDIR--QKKWRVFGDITQ-EQKI----QSKGLLWL--GKIIVVCNYIDSSNTYELLFYP  527 (696)
Q Consensus       459 a~s~dG~~la~ag~-dG~i-~w~~~--sg~w~~f~~~~~-e~~~----~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~  527 (696)
                      +|+|||++++++.+ ++.+ +|++.  +++.+....... ...+    ...++.+.  ++++.+++    ..+..|.+|+
T Consensus       181 ~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~----~~~~~I~v~~  256 (330)
T PRK11028        181 VFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD----RTASLISVFS  256 (330)
T ss_pred             EECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec----CCCCeEEEEE
Confidence            99999999988877 8888 99997  445443221110 0000    11134444  45777762    2345788887


Q ss_pred             CCCCCc-cceeEEeec--CCccEEEEccCCEEEEEEc-CceEEEEEEEEecccCCCCCCeeEeEEEEEEeecccCCCCce
Q 005459          528 RYHLDQ-SSLLCRKSL--LAKPIVMDVYEDYILVTYR-PFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAA  603 (696)
Q Consensus       528 ~~~l~~-~~~~~~~~~--~~~~l~~~~~~~~llv~~~-d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  603 (696)
                      .+.-.. ..+....+.  ...-+.+++++++|+++.. ++.+.+|+++.++         ..+..++.+.   ....|.|
T Consensus       257 i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~---------g~l~~~~~~~---~g~~P~~  324 (330)
T PRK11028        257 VSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGET---------GLLTELGRYA---VGQGPMW  324 (330)
T ss_pred             EeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCC---------CcEEEccccc---cCCCceE
Confidence            741111 111222111  1125788899999999664 7889999876321         1243444333   2567888


Q ss_pred             EEEe
Q 005459          604 MRFI  607 (696)
Q Consensus       604 ~~~~  607 (696)
                      |+.+
T Consensus       325 ~~~~  328 (330)
T PRK11028        325 VSVL  328 (330)
T ss_pred             EEEE
Confidence            7764

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.43  E-value=4.3e-12  Score=126.23  Aligned_cols=196  Identities=14%  Similarity=0.187  Sum_probs=149.9

Q ss_pred             cCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCC------ceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEE
Q 005459          254 LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESA------SLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAV  324 (696)
Q Consensus       254 ~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~------~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~las  324 (696)
                      .||..++. ++|+| +...||+|++|.+|.||++.+.+      +++..+.+        |+..|--++|.|- -+.|++
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g--------H~rrVg~V~wHPtA~NVLls  149 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG--------HQRRVGLVQWHPTAPNVLLS  149 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee--------cceeEEEEeecccchhhHhh
Confidence            68999999 99999 67899999999999999998732      34566777        9999999999994 568999


Q ss_pred             EEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcce----EE
Q 005459          325 GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSER----VL  397 (696)
Q Consensus       325 g~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~----v~  397 (696)
                      ++.|.+|.+|++.++..+-+|. | .+.|.++.|+.+|    ..+++.+   ++++||+..++++....+|.+.    ++
T Consensus       150 ag~Dn~v~iWnv~tgeali~l~-h-pd~i~S~sfn~dG----s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai  223 (472)
T KOG0303|consen  150 AGSDNTVSIWNVGTGEALITLD-H-PDMVYSMSFNRDG----SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI  223 (472)
T ss_pred             ccCCceEEEEeccCCceeeecC-C-CCeEEEEEeccCC----ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE
Confidence            9999999999999999888888 5 7889999999999    8888887   8999999999998887666542    33


Q ss_pred             EEecceeeeeccCC----CCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee--ecCCCceEEEEEcCCCCEEEEEe
Q 005459          398 IFSFGKCCLNRGVS----GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY--ISQNWPVQHVAASKDGMFLAVAG  471 (696)
Q Consensus       398 ~~~~~~~~~s~~~d----~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~I~~va~s~dG~~la~ag  471 (696)
                      -+.-++ ++|.+..    ..+-+|+-..-+.                    |-.+  +.....|.-=-+++|-+.+-.+|
T Consensus       224 fl~~g~-i~tTGfsr~seRq~aLwdp~nl~e--------------------P~~~~elDtSnGvl~PFyD~dt~ivYl~G  282 (472)
T KOG0303|consen  224 FLASGK-IFTTGFSRMSERQIALWDPNNLEE--------------------PIALQELDTSNGVLLPFYDPDTSIVYLCG  282 (472)
T ss_pred             EeccCc-eeeeccccccccceeccCcccccC--------------------cceeEEeccCCceEEeeecCCCCEEEEEe
Confidence            333366 4444433    3445566444333                    2221  22333466667889988776555


Q ss_pred             -CCccE-EEEccCCc
Q 005459          472 -LHGLI-LYDIRQKK  484 (696)
Q Consensus       472 -~dG~i-~w~~~sg~  484 (696)
                       .||.| .|.+....
T Consensus       283 KGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  283 KGDSSIRYFEITNEP  297 (472)
T ss_pred             cCCcceEEEEecCCC
Confidence             58899 99887764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=1.1e-11  Score=135.50  Aligned_cols=233  Identities=13%  Similarity=0.067  Sum_probs=144.4

Q ss_pred             CeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecC---cEEEEEEEEecCcccccCCCCCCCceee
Q 005459           40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIGGKQPSGLFFI  116 (696)
Q Consensus        40 ~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~d---g~l~l~~l~~~~~~~~~~~~~~~~~~~~  116 (696)
                      ..|.|||.. ... ...+.+      ..+.+....|||||+.||..+.+   ..|.+||+.++......           
T Consensus       184 ~~i~i~d~d-g~~-~~~lt~------~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------  244 (429)
T PRK01742        184 YEVRVADYD-GFN-QFIVNR------SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------  244 (429)
T ss_pred             EEEEEECCC-CCC-ceEecc------CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------
Confidence            589999985 322 111111      23457889999999999987654   36899998754321110           


Q ss_pred             eeeEEEeeeccccccceeEEEeeeCCCeEEEEe-cCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccC
Q 005459          117 KISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT  195 (696)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t-~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~  195 (696)
                            .    ..+... ..++++|++.|+++. .+|.+.++.|+........                           
T Consensus       245 ------~----~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~---------------------------  286 (429)
T PRK01742        245 ------S----FRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ---------------------------  286 (429)
T ss_pred             ------c----CCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe---------------------------
Confidence                  0    011111 136788898888865 5777766666532221110                           


Q ss_pred             CCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEee-ccCCceeeeeeec---ceecCCCCeEEEEEcCCCcEE
Q 005459          196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKI---DKELGSGDAVCASIAPEQQIL  271 (696)
Q Consensus       196 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~-~d~~~~~~~~~~~---~~~~~~~~~v~v~~sp~~~~l  271 (696)
                              +..+...+          ....++|||+.++..+ .++..++|+....   ....++.. .+.+|+|||+.|
T Consensus       287 --------lt~~~~~~----------~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~i  347 (429)
T PRK01742        287 --------LTSGAGNN----------TEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTL  347 (429)
T ss_pred             --------eccCCCCc----------CCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEE
Confidence                    00011111          2245789999766555 4667788875421   11123333 347899999999


Q ss_pred             EEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc--CCeeEEEeeccc
Q 005459          272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--GCRLMSTIRQIS  349 (696)
Q Consensus       272 a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~--~~~~~~~l~~~~  349 (696)
                      |+++.++.+ +||+.+ +... .+..        + .....++|+|||+.|+.++.+++..+|.+.  .+.....+.+| 
T Consensus       348 a~~~~~~i~-~~Dl~~-g~~~-~lt~--------~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~-  414 (429)
T PRK01742        348 VMINGDNVV-KQDLTS-GSTE-VLSS--------T-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS-  414 (429)
T ss_pred             EEEcCCCEE-EEECCC-CCeE-EecC--------C-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC-
Confidence            998887654 589876 4432 2222        1 123467899999999999999999988863  46677888766 


Q ss_pred             ccceecccccCC
Q 005459          350 LSSISSPIVKPN  361 (696)
Q Consensus       350 ~~~v~~~~~sp~  361 (696)
                      ...+..++|+|.
T Consensus       415 ~g~~~~p~wsp~  426 (429)
T PRK01742        415 DGQVKFPAWSPY  426 (429)
T ss_pred             CCCCCCcccCCC
Confidence            556788888875

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.41  E-value=1.2e-11  Score=126.25  Aligned_cols=257  Identities=10%  Similarity=0.125  Sum_probs=173.4

Q ss_pred             EecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEEcCCcEEEEEccCCe----eEEEeecc
Q 005459          274 GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCR----LMSTIRQI  348 (696)
Q Consensus       274 g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~~Dg~v~vW~~~~~~----~~~~l~~~  348 (696)
                      ++...++++||+.+ .+....+..    +...|  .+.++.|+.... ..|+.+.|+.+++|.-.+..    .+..+.+.
T Consensus         8 aS~gd~~kl~D~s~-~~~~~~~~~----~t~~p--g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd   80 (673)
T KOG4378|consen    8 ASTGDKTKLSDFSD-LETKSEYVH----QTAEP--GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD   80 (673)
T ss_pred             eccCCceEEeeccc-ccCcccccc----CCCCC--cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc
Confidence            34445799999987 433333322    11122  399999998764 45566788999999865541    12222222


Q ss_pred             cccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeec
Q 005459          349 SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYG  422 (696)
Q Consensus       349 ~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~  422 (696)
                      ....|.+..+   .    .++++|.   .+.+||+....+...+++|.+.|..+.+   ..++++++..|-+.++.+.++
T Consensus        81 ~~~Cv~~~s~---S----~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~  153 (673)
T KOG4378|consen   81 NAFCVACASQ---S----LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK  153 (673)
T ss_pred             hHHHHhhhhc---c----eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC
Confidence            1112222222   2    4566665   8999999977778888999999977776   778999999999999887766


Q ss_pred             CCeEEEEecCCCCcceeEEeecCeeeec-CCCceEEEEEcCCCCE-EEEEeCCccE-EEEccCCceEecCCccceeeeEE
Q 005459          423 EDRLLVVQSEDTDELKILHLNLPVSYIS-QNWPVQHVAASKDGMF-LAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQS  499 (696)
Q Consensus       423 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~I~~va~s~dG~~-la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v  499 (696)
                      ..                    -.+|.. .+..||-+.+||..++ |.++|.+|.+ +||++..+=+.--.+  .+...+
T Consensus       154 ~~--------------------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~--~HsAP~  211 (673)
T KOG4378|consen  154 QK--------------------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE--AHSAPC  211 (673)
T ss_pred             cc--------------------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh--hccCCc
Confidence            54                    233432 2456889999998885 6789999999 999987653322222  223347


Q ss_pred             EeEeee--CcEEEEEEeecCCCeEEEEEeeCC-CCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459          500 KGLLWL--GKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL  572 (696)
Q Consensus       500 ~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~  572 (696)
                      .|+|+.  +..|++.  +  +-+..|.+|+.. +-....+.+.+++.+  +.+..+|-+|+.+...+.+.-|++..
T Consensus       212 ~gicfspsne~l~vs--V--G~Dkki~~yD~~s~~s~~~l~y~~Plst--vaf~~~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  212 RGICFSPSNEALLVS--V--GYDKKINIYDIRSQASTDRLTYSHPLST--VAFSECGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             CcceecCCccceEEE--e--cccceEEEeecccccccceeeecCCcce--eeecCCceEEEeecCCceEEEEeccc
Confidence            788885  4445443  2  334689999886 323333667777776  89999999999999999888887765

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.40  E-value=8.7e-11  Score=117.63  Aligned_cols=183  Identities=17%  Similarity=0.207  Sum_probs=122.4

Q ss_pred             cccccEEEEcCCCc-EEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--eeCCC
Q 005459           67 EGENLQAVWSPDTK-LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNK  143 (696)
Q Consensus        67 ~G~~~~v~wsPDg~-~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~  143 (696)
                      +.++..+.|.+.+. .||+++.|..++||.+..+....-          ...+    +....+..+...|+++  .++++
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~----------~~~V----~y~s~Ls~H~~aVN~vRf~p~ge   78 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG----------DMKV----EYLSSLSRHTRAVNVVRFSPDGE   78 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC----------ceeE----EEeecccCCcceeEEEEEcCCcC
Confidence            45677888988887 999999999999999986542110          0111    1112233444445444  55666


Q ss_pred             eEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceE
Q 005459          144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL  223 (696)
Q Consensus       144 ~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  223 (696)
                      .++.|.++|.+.+  |....                                             ..+            
T Consensus        79 lLASg~D~g~v~l--Wk~~~---------------------------------------------~~~------------   99 (434)
T KOG1009|consen   79 LLASGGDGGEVFL--WKQGD---------------------------------------------VRI------------   99 (434)
T ss_pred             eeeecCCCceEEE--EEecC---------------------------------------------cCC------------
Confidence            7777777787766  43110                                             001            


Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY  302 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~  302 (696)
                        +..|..    .-.+.  ..|-..  +.+.+|.+-+. ++|+||+.++++|+-|.++++||+.. +.....+..     
T Consensus       100 --~~~d~e----~~~~k--e~w~v~--k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~d-----  163 (434)
T KOG1009|consen  100 --FDADTE----ADLNK--EKWVVK--KVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAILDD-----  163 (434)
T ss_pred             --ccccch----hhhCc--cceEEE--EEecccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEeeccc-----
Confidence              001110    00000  112211  12256777777 99999999999999999999999998 777777777     


Q ss_pred             CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee
Q 005459          303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL  341 (696)
Q Consensus       303 ~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~  341 (696)
                         |..-|.-++|.|-++++++-+.|...+..+....+.
T Consensus       164 ---h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~  199 (434)
T KOG1009|consen  164 ---HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV  199 (434)
T ss_pred             ---cccccceeecchhhhhhhhhccCcccceeeeeeeee
Confidence               999999999999999999999999888877754443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.39  E-value=7.1e-12  Score=118.60  Aligned_cols=268  Identities=16%  Similarity=0.176  Sum_probs=157.3

Q ss_pred             CceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcc--cccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459           21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREG--ENLQAVWSPDTKLIAVVTSSLYLHIFKVQI   98 (696)
Q Consensus        21 ~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G--~~~~v~wsPDg~~lav~t~dg~l~l~~l~~   98 (696)
                      ...-+.|-.+++|++-...+.|.+|... ..       |..-.++.+|  .+..+.--|. ..+.+...|+.|.+|++..
T Consensus        16 ~v~s~~fqa~~rL~sg~~~G~V~~w~lq-t~-------r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~   86 (323)
T KOG0322|consen   16 SVTSVLFQANERLMSGLSVGIVKMWVLQ-TE-------RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY   86 (323)
T ss_pred             hheehhhccchhhhcccccceEEEEEee-cC-------ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence            3444668888998876678899999993 32       3332333232  3455666776 6788889999999999986


Q ss_pred             cCcc--------------c-ccCCCCCCCcee--eee---eEE-----Eeeecc-----ccccceeEEEeeeC---CC--
Q 005459           99 TEKS--------------I-QIGGKQPSGLFF--IKI---SLV-----LNEQLP-----FAEKGLSVSNIVSD---NK--  143 (696)
Q Consensus        99 ~~~~--------------~-~~~~~~~~~~~~--~~~---~l~-----~~~~~~-----~~~~~~~v~~~~~~---~~--  143 (696)
                      +.--              . +.....+.++.+  .+-   ++.     ..-++.     -..+.++++|...+   +.  
T Consensus        87 s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~  166 (323)
T KOG0322|consen   87 SAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF  166 (323)
T ss_pred             cceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE
Confidence            4310              0 000111100000  000   000     000000     01234566666421   22  


Q ss_pred             eEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceE
Q 005459          144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL  223 (696)
Q Consensus       144 ~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  223 (696)
                      .+++|-.+|.+..|+...+. ....   .|+...                      .-.....+...+.+++|.+.-+.-
T Consensus       167 lllaGyEsghvv~wd~S~~~-~~~~---~~~~~k----------------------v~~~~ash~qpvlsldyas~~~rG  220 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGD-KIIQ---LPQSSK----------------------VESPNASHKQPVLSLDYASSCDRG  220 (323)
T ss_pred             EEEEeccCCeEEEEEccCCc-eeec---cccccc----------------------cccchhhccCcceeeeechhhcCC
Confidence            35566677888775443321 1110   111100                      001233556678888887655443


Q ss_pred             EEEEeCCcEEEEeeccCC--ceeeeeeecceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459          224 FVLYSNGQLMSCSVSKKG--LKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW  300 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~  300 (696)
                      +...++-+.....-++.+  ..+-....    ..| ..+. +.+-||++.+|+++.||.||||+.++ ..++..++-   
T Consensus       221 isgga~dkl~~~Sl~~s~gslq~~~e~~----lkn-pGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLky---  291 (323)
T KOG0322|consen  221 ISGGADDKLVMYSLNHSTGSLQIRKEIT----LKN-PGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKY---  291 (323)
T ss_pred             cCCCccccceeeeeccccCcccccceEE----ecC-CCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhh---
Confidence            434444444433322211  11100000    122 2344 88999999999999999999999998 888888888   


Q ss_pred             CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459          301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS  337 (696)
Q Consensus       301 ~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~  337 (696)
                           |++.|++++|+||...+|++++|+.|.+|+++
T Consensus       292 -----Hsagvn~vAfspd~~lmAaaskD~rISLWkLY  323 (323)
T KOG0322|consen  292 -----HSAGVNAVAFSPDCELMAAASKDARISLWKLY  323 (323)
T ss_pred             -----hhcceeEEEeCCCCchhhhccCCceEEeeecC
Confidence                 99999999999999999999999999999874

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.39  E-value=5.6e-11  Score=113.88  Aligned_cols=216  Identities=18%  Similarity=0.196  Sum_probs=157.2

Q ss_pred             CCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEE
Q 005459          256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTV  333 (696)
Q Consensus       256 ~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~v  333 (696)
                      +...-|+.|.|++..+|+-. |..|.+|+++...+....+..   +.+.+|+...++-+|||  ||+.+++.++ ++++.
T Consensus       123 vg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~s---s~s~e~~~~ftsg~WspHHdgnqv~tt~d-~tl~~  197 (370)
T KOG1007|consen  123 VGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLS---SESAEMRHSFTSGAWSPHHDGNQVATTSD-STLQF  197 (370)
T ss_pred             hCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecc---cccccccceecccccCCCCccceEEEeCC-CcEEE
Confidence            34556799999999988755 889999999873332333332   22334677788899999  9999998876 99999


Q ss_pred             EEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCC-ceEEEEecCCcceEEEEec----ceee
Q 005459          334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLIFSF----GKCC  405 (696)
Q Consensus       334 W~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~-~~l~~~~~~~~~~v~~~~~----~~~~  405 (696)
                      ||+.+......++..|...|..+.|.|+.   ...++++.   .+++||.+. ...+..+.+|...||++.|    .+.+
T Consensus       198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnk---q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi  274 (370)
T KOG1007|consen  198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNK---QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI  274 (370)
T ss_pred             EEccchhhhcchhhhhcceeeeccCCCCc---eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence            99999888888887556679999999985   25566665   899999875 4567778899999977766    6789


Q ss_pred             eeccCCCCceeeeeeecCCeEEEEecCCCCc-----ceeEEeec----CeeeecCCCceEEEEEcCCC-CEEEEEeCCcc
Q 005459          406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDE-----LKILHLNL----PVSYISQNWPVQHVAASKDG-MFLAVAGLHGL  475 (696)
Q Consensus       406 ~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~-----~~w~~~~~----~~~~~~~~~~I~~va~s~dG-~~la~ag~dG~  475 (696)
                      +|++.|..+.+|....-..+.-+..+.|..+     ..-++..+    ..+|..|...|++++||.-. =.+|+-+-||.
T Consensus       275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGR  354 (370)
T KOG1007|consen  275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGR  354 (370)
T ss_pred             EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCce
Confidence            9999999998887654433222332332221     11111122    34889999999999998654 46789999999


Q ss_pred             EEEE
Q 005459          476 ILYD  479 (696)
Q Consensus       476 i~w~  479 (696)
                      ++-+
T Consensus       355 viIs  358 (370)
T KOG1007|consen  355 VIIS  358 (370)
T ss_pred             EEee
Confidence            8443

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.39  E-value=2.9e-10  Score=112.78  Aligned_cols=128  Identities=20%  Similarity=0.267  Sum_probs=100.5

Q ss_pred             ceeeeeeeccee------cCCCCeEE-EEEcCCCcEEEEE--ecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEE
Q 005459          242 LKLAEFIKIDKE------LGSGDAVC-ASIAPEQQILAVG--TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC  312 (696)
Q Consensus       242 ~~~~~~~~~~~~------~~~~~~v~-v~~sp~~~~la~g--~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~  312 (696)
                      +.+.|+.+-+.+      ..+...+| +++|+.+.+||.=  ...|.|.|||+.+ .+...++..        |.+++.+
T Consensus       108 IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~a--------H~~~lAa  178 (391)
T KOG2110|consen  108 IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINA--------HKGPLAA  178 (391)
T ss_pred             EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEe--------cCCceeE
Confidence            666766544332      34566677 8888888899963  3469999999988 788888888        9999999


Q ss_pred             EEECCCCCeEEEEEcCCc-EEEEEccCCeeEEEeecc-cccceecccccCCCCCCccceecce---eeEEEcCCC
Q 005459          313 IAWTPDNSAFAVGWKSRG-LTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG  382 (696)
Q Consensus       313 l~~spdg~~lasg~~Dg~-v~vW~~~~~~~~~~l~~~-~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~  382 (696)
                      |+|+|||.+||++++.|+ |||+++..++.+..++.. -...+.+++|+|+.    +.+...+   ++.++.++.
T Consensus       179 lafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds----~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  179 LAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS----QFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             EEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC----CeEEEecCCCeEEEEEecc
Confidence            999999999999999998 699999999999999853 23458899999998    6655433   666665543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=2.3e-11  Score=134.29  Aligned_cols=298  Identities=12%  Similarity=0.110  Sum_probs=169.3

Q ss_pred             cEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEec
Q 005459           71 LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS  150 (696)
Q Consensus        71 ~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~  150 (696)
                      ..+.|+|=..+++++...-.+++||-+.+.....+.....+...+.++++..+                .|...+++|+.
T Consensus      1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe----------------~D~aLlLtas~ 1131 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINE----------------QDDALLLTASS 1131 (1387)
T ss_pred             ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecc----------------cchhheeeecc
Confidence            46889998899999988889999999866542222222222233333332111                13457899999


Q ss_pred             CCcEEEEecCCcccc--ceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEe
Q 005459          151 DGSLYSISWKGEFYG--AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS  228 (696)
Q Consensus       151 ~g~i~~~~w~~~~~~--~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  228 (696)
                      ||.|++|  +.-...  ..++          -+.-++...++..            ......+++           |--.
T Consensus      1132 dGvIRIw--k~y~~~~~~~eL----------VTaw~~Ls~~~~~------------~r~~~~v~d-----------WqQ~ 1176 (1387)
T KOG1517|consen 1132 DGVIRIW--KDYADKWKKPEL----------VTAWSSLSDQLPG------------ARGTGLVVD-----------WQQQ 1176 (1387)
T ss_pred             CceEEEe--cccccccCCcee----------EEeeccccccCcc------------CCCCCeeee-----------hhhh
Confidence            9999984  432221  1110          0000001110000            000112221           1223


Q ss_pred             CCcEEEEeeccCCceeeeeeecceecC--CCCeEE-EEEcC---CCcEEEEEecCCeEEEEEccCCC--ceeeEEeeccC
Q 005459          229 NGQLMSCSVSKKGLKLAEFIKIDKELG--SGDAVC-ASIAP---EQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDW  300 (696)
Q Consensus       229 dG~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~v~-v~~sp---~~~~la~g~~dg~v~vw~~~~~~--~~~~~~~~~~~  300 (696)
                      .|.++. ++.-..+++||.....+..+  -....+ .+.++   .|+.||.|..||.||+||.+...  ..+...+.   
T Consensus      1177 ~G~Ll~-tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~--- 1252 (1387)
T KOG1517|consen 1177 SGHLLV-TGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE--- 1252 (1387)
T ss_pred             CCeEEe-cCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc---
Confidence            455444 34466799999887654411  112222 33444   48999999999999999988632  24555665   


Q ss_pred             CCCCCCCCC--eEEEEECCCCCe-EEEEEcCCcEEEEEccCCeeEEEe--eccc--ccceecccccCCCCCCccceecce
Q 005459          301 GYSMDDTGP--VSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMSTI--RQIS--LSSISSPIVKPNQDCKYEPLMSGT  373 (696)
Q Consensus       301 ~~~~~h~g~--V~~l~~spdg~~-lasg~~Dg~v~vW~~~~~~~~~~l--~~~~--~~~v~~~~~sp~~~~~~~~l~sg~  373 (696)
                           |+..  |..+.+-+.|.. |++|+.||.|++||+........+  ..|-  .+..+++..++..    ..++   
T Consensus      1253 -----h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~ha----piiA--- 1320 (1387)
T KOG1517|consen 1253 -----HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHA----PIIA--- 1320 (1387)
T ss_pred             -----cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCC----Ceee---
Confidence                 7776  999999998776 999999999999999764211111  1110  0113344444433    3333   


Q ss_pred             eeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec-CC
Q 005459          374 SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS-QN  452 (696)
Q Consensus       374 ~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~  452 (696)
                                                       +|+. +.+++|++.......+.+               -..|.+ ..
T Consensus      1321 ---------------------------------sGs~-q~ikIy~~~G~~l~~~k~---------------n~~F~~q~~ 1351 (1387)
T KOG1517|consen 1321 ---------------------------------SGSA-QLIKIYSLSGEQLNIIKY---------------NPGFMGQRI 1351 (1387)
T ss_pred             ---------------------------------ecCc-ceEEEEecChhhhccccc---------------CcccccCcC
Confidence                                             4443 444455433222111100               011222 23


Q ss_pred             CceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       453 ~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                      ..+.|++|.|---.+|+|..|.++ +|....++
T Consensus      1352 gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1352 GSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             CCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            457899999999999999999999 99876543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.37  E-value=1.8e-11  Score=126.38  Aligned_cols=95  Identities=21%  Similarity=0.419  Sum_probs=85.2

Q ss_pred             CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459          258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       258 ~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~  336 (696)
                      +++. .+|+|||++||+-++||.+||||.++ .+++-.++.        .-|...|++|||||++|++|++|.-|.||++
T Consensus       291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkS--------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf  361 (636)
T KOG2394|consen  291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKS--------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF  361 (636)
T ss_pred             ccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHh--------hccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence            4566 99999999999999999999999987 666655555        5688999999999999999999999999999


Q ss_pred             cCCeeEEEeecccccceecccccCCC
Q 005459          337 SGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       337 ~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      ..++.++.=++| .+.|+.++|+|.-
T Consensus       362 ~erRVVARGqGH-kSWVs~VaFDpyt  386 (636)
T KOG2394|consen  362 EERRVVARGQGH-KSWVSVVAFDPYT  386 (636)
T ss_pred             ccceEEEecccc-ccceeeEeecccc
Confidence            999999998888 8999999998853

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.36  E-value=1.5e-11  Score=120.57  Aligned_cols=227  Identities=16%  Similarity=0.163  Sum_probs=139.7

Q ss_pred             CCcEEEEeeccCCceeeeeeeccee-----cCCC--CeEEEEEcCCCcEEEEEec----CCeEEEEEccCCCceeeEEee
Q 005459          229 NGQLMSCSVSKKGLKLAEFIKIDKE-----LGSG--DAVCASIAPEQQILAVGTR----RGVVELYDLAESASLIRTVSL  297 (696)
Q Consensus       229 dG~~~~~~~~d~~~~~~~~~~~~~~-----~~~~--~~v~v~~sp~~~~la~g~~----dg~v~vw~~~~~~~~~~~~~~  297 (696)
                      .+..+.+++.||++++||.+...+.     .++.  .-+|++.+-+.++++.|..    |-.|.+||++...++++.+..
T Consensus        83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e  162 (376)
T KOG1188|consen   83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE  162 (376)
T ss_pred             CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh
Confidence            4567788889999999999864332     3344  3456888889999999974    788999999985555655544


Q ss_pred             ccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCe----eEEEeecccccceecccccCCCCCCccceecc
Q 005459          298 YDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCR----LMSTIRQISLSSISSPIVKPNQDCKYEPLMSG  372 (696)
Q Consensus       298 ~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~----~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg  372 (696)
                             .|...|++|+|.| |.+.|++|+-||-|.|+|+....    +++++. + .++|..+.|..++   ++.+..=
T Consensus       163 -------SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~-~sSI~~igw~~~~---ykrI~cl  230 (376)
T KOG1188|consen  163 -------SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-H-GSSIHLIGWLSKK---YKRIMCL  230 (376)
T ss_pred             -------hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-c-cceeeeeeeecCC---cceEEEE
Confidence                   4999999999999 78899999999999999996542    233332 2 2446666665543   2222211


Q ss_pred             e---eeEEEcCCCceEEEEecCCc------------ceE-EEEec--ceee-eeccCCCCceeeeeeecCCeEEEEecCC
Q 005459          373 T---SMMQWDEYGYRLYAIEEGSS------------ERV-LIFSF--GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSED  433 (696)
Q Consensus       373 ~---~~~~W~~~~~~l~~~~~~~~------------~~v-~~~~~--~~~~-~s~~~d~~~~~w~~~~~~~~~~~~~~~~  433 (696)
                      +   +-..|+.+.+.....++...            +.+ -...+  .... +.++..+...+..+.....         
T Consensus       231 TH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s---------  301 (376)
T KOG1188|consen  231 THMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSS---------  301 (376)
T ss_pred             EccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccc---------
Confidence            1   44456555443222221110            001 11112  1111 2222233333332221100         


Q ss_pred             CCcceeEEeecCeeeec-CCCceEEEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459          434 TDELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR  481 (696)
Q Consensus       434 ~~~~~w~~~~~~~~~~~-~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~  481 (696)
                           -...+-|..+.+ |..-||++.|...+..+.+||+||.+ +|..+
T Consensus       302 -----~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  302 -----GSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             -----ccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence                 001112334444 66779999999999999999999999 99863

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.35  E-value=3.5e-10  Score=127.14  Aligned_cols=220  Identities=12%  Similarity=0.111  Sum_probs=133.8

Q ss_pred             ccEEEE-cCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEE
Q 005459           70 NLQAVW-SPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG  148 (696)
Q Consensus        70 ~~~v~w-sPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~  148 (696)
                      +..++- +|+++++++++.||+|++|+...-....   +..     -..+.++.      .+...........++.++++
T Consensus      1051 v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---~s~-----rS~ltys~------~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---GSA-----RSELTYSP------EGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             ccceeecCCCCceEEEecCCceEEEeeehhhhcCc---cee-----eeeEEEec------cCCceEEEEeccCCCeEEEE
Confidence            345554 5566999999999999999997432210   000     00011111      11222233445678999999


Q ss_pred             ecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEe
Q 005459          149 LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS  228 (696)
Q Consensus       149 t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  228 (696)
                      ++||.|+.+.-+-.......                            ..+.++....+...+++|....        ..
T Consensus      1117 t~DG~v~~~~id~~~~~~~~----------------------------~~~~ri~n~~~~g~vv~m~a~~--------~~ 1160 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRV----------------------------ATQVRIPNLKKDGVVVSMHAFT--------AI 1160 (1431)
T ss_pred             cCCCeEEEEEccccccccce----------------------------eeeeecccccCCCceEEeeccc--------cc
Confidence            99999998776642111110                            0112233444555677775221        12


Q ss_pred             CCc-EEEEeeccCCceeeeeeeccee------cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459          229 NGQ-LMSCSVSKKGLKLAEFIKIDKE------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG  301 (696)
Q Consensus       229 dG~-~~~~~~~d~~~~~~~~~~~~~~------~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~  301 (696)
                      ++. .++.+..-+.+..||.......      ..|+-.+.++++|-++++++|+..|.+.+||++- ..++..++-    
T Consensus      1161 ~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~---- 1235 (1431)
T KOG1240|consen 1161 VQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEH---- 1235 (1431)
T ss_pred             ccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccC----
Confidence            233 3444444555666776543211      3455555599999999999999999999999997 666666654    


Q ss_pred             CCCCCCCCeEEEEECC---CCCeEEEE-E-cCCcEEEEEccCCeeEEEeec
Q 005459          302 YSMDDTGPVSCIAWTP---DNSAFAVG-W-KSRGLTVWSVSGCRLMSTIRQ  347 (696)
Q Consensus       302 ~~~~h~g~V~~l~~sp---dg~~lasg-~-~Dg~v~vW~~~~~~~~~~l~~  347 (696)
                         .+..+++.|...|   .....+++ + ..+.|.+|++.++.+..++..
T Consensus      1236 ---P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1236 ---PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred             ---cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEc
Confidence               2556777776665   33444444 4 578999999999877666653

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=9.9e-11  Score=115.50  Aligned_cols=187  Identities=21%  Similarity=0.255  Sum_probs=136.1

Q ss_pred             EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEcCCcEEEEEccCCe
Q 005459          262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCR  340 (696)
Q Consensus       262 v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~Dg~v~vW~~~~~~  340 (696)
                      ++|++...-+|++..|-+||+|+-+. . ....++.       .....|+||+|-|. ++.|+.|.. ++|.+|......
T Consensus       104 ~aWhqH~~~fava~nddvVriy~kss-t-~pt~Lks-------~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tl  173 (445)
T KOG2139|consen  104 VAWHQHIIAFAVATNDDVVRIYDKSS-T-CPTKLKS-------VSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTL  173 (445)
T ss_pred             EeechhhhhhhhhccCcEEEEeccCC-C-CCceecc-------hhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccc
Confidence            89999888999999999999999765 2 2222332       14567999999994 557788877 899999874221


Q ss_pred             ------------eEEEeecccccceecccccCCCCCCccceecce----eeEEEcCCCceEEEEecCCc--ceEEEEec-
Q 005459          341 ------------LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSS--ERVLIFSF-  401 (696)
Q Consensus       341 ------------~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~~~--~~v~~~~~-  401 (696)
                                  ....+++.|...|+++++.+|+    -.+++++    .+++|+++++...-......  ...+.++| 
T Consensus       174 n~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dg----t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd  249 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDG----TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD  249 (445)
T ss_pred             ccccccccccccchhheeCCCCceeeEEEEcCCC----CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC
Confidence                        2233445445789999999998    7777765    89999999887655442222  23578888 


Q ss_pred             ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEcc
Q 005459          402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIR  481 (696)
Q Consensus       402 ~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~  481 (696)
                      +..+..+..|+..++|...+.-..                    ....--.+.|...+|||+|++|..+......+|++.
T Consensus       250 gd~lfaAt~davfrlw~e~q~wt~--------------------erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~  309 (445)
T KOG2139|consen  250 GDVLFAATCDAVFRLWQENQSWTK--------------------ERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLT  309 (445)
T ss_pred             CCEEEEecccceeeeehhccccee--------------------cceeccCCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence            888999999999999976554321                    111112337999999999999988887666688875


Q ss_pred             C
Q 005459          482 Q  482 (696)
Q Consensus       482 s  482 (696)
                      .
T Consensus       310 f  310 (445)
T KOG2139|consen  310 F  310 (445)
T ss_pred             e
Confidence            3

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.35  E-value=2.4e-11  Score=125.07  Aligned_cols=137  Identities=19%  Similarity=0.197  Sum_probs=95.2

Q ss_pred             cEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc
Q 005459          269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI  348 (696)
Q Consensus       269 ~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~  348 (696)
                      ..++..+.||.+.+-+-.  ++..+.+..        |.++|.+-.|+|||.-|.++++||.|++|+-.|. +-.++.+.
T Consensus        76 d~~~i~s~DGkf~il~k~--~rVE~sv~A--------H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-LRStl~Q~  144 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKS--ARVERSISA--------HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-LRSTVVQN  144 (737)
T ss_pred             ceEEEEcCCceEEEeccc--chhhhhhhh--------hhhhhhhcccCCCCceeeeecCCceEEEEeccch-HHHHHhhc
Confidence            357778889988886633  555566666        9999999999999999999999999999996654 44555555


Q ss_pred             cccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeee
Q 005459          349 SLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQV  419 (696)
Q Consensus       349 ~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~  419 (696)
                       ..+|.|++|.|+..  .-.+..|..+.+=.+....-+..-+.|++-|++++.   ...++|++.|-..++||-
T Consensus       145 -~~~v~c~~W~p~S~--~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~  215 (737)
T KOG1524|consen  145 -EESIRCARWAPNSN--SIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA  215 (737)
T ss_pred             -CceeEEEEECCCCC--ceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc
Confidence             45699999999862  111111111111111111122233467777877776   778999999999999993

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=2.1e-11  Score=119.56  Aligned_cols=270  Identities=13%  Similarity=0.133  Sum_probs=169.2

Q ss_pred             cEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459          269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIR  346 (696)
Q Consensus       269 ~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~~~~~~~l~  346 (696)
                      ..+|++..+|+|++||..+ ++.+..+++        |.+.++.++|..  .+..+.+|+.||+|++||+........+.
T Consensus        41 ~~vav~lSngsv~lyd~~t-g~~l~~fk~--------~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~  111 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT-GQLLEEFKG--------PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS  111 (376)
T ss_pred             eeEEEEecCCeEEEEeccc-hhhhheecC--------CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee
Confidence            6799999999999999998 888888998        888888999977  46789999999999999997765544443


Q ss_pred             c--ccccceecccccCCCCCCccceecce-------eeEEEcCCCceE-EEE-ecCCcceEEE--Eec--ceeeeeccCC
Q 005459          347 Q--ISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYRL-YAI-EEGSSERVLI--FSF--GKCCLNRGVS  411 (696)
Q Consensus       347 ~--~~~~~v~~~~~sp~~~~~~~~l~sg~-------~~~~W~~~~~~l-~~~-~~~~~~~v~~--~~~--~~~~~s~~~d  411 (696)
                      .  +...+..+++.    .|+...++.|.       .+.+||.+..+- +.. ...|.+.|.+  |.|  ...++||+.|
T Consensus       112 ~~~~~~~~f~~ld~----nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD  187 (376)
T KOG1188|consen  112 WTQQSGTPFICLDL----NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD  187 (376)
T ss_pred             ccCCCCCcceEeec----cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence            2  31123333332    34556666665       788999986554 433 3568888854  555  6789999999


Q ss_pred             CCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC-CEEEEEeCCccE-EEEccCCceEecC
Q 005459          412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKKWRVFG  489 (696)
Q Consensus       412 ~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG-~~la~ag~dG~i-~w~~~sg~w~~f~  489 (696)
                      |.+.++|+....+.          +       -...-..|...|-.+.|..++ +.|.+-+..+.. +|+.+.+.-++-.
T Consensus       188 GLvnlfD~~~d~Ee----------D-------aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~  250 (376)
T KOG1188|consen  188 GLVNLFDTKKDNEE----------D-------ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL  250 (376)
T ss_pred             ceEEeeecCCCcch----------h-------hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence            99999998765431          0       011233566679999999998 335555666655 9999888632211


Q ss_pred             Ccc--------cee--eeEEEeEee-eCcEEEEEEeecCCCeEEEEEeeCC--CCCcc-cee---EEeecCCccEEEEcc
Q 005459          490 DIT--------QEQ--KIQSKGLLW-LGKIIVVCNYIDSSNTYELLFYPRY--HLDQS-SLL---CRKSLLAKPIVMDVY  552 (696)
Q Consensus       490 ~~~--------~e~--~~~v~~~~w-~~~~lv~~~~~~~~~~~~lr~y~~~--~l~~~-~~~---~~~~~~~~~l~~~~~  552 (696)
                      +..        .|.  ++.|.+.+= ..+..++++-. .....-+++-+..  .+.+. ..+   |.+-+.  -++++..
T Consensus       251 ~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~-~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR--~i~~~~~  327 (376)
T KOG1188|consen  251 ENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTD-SNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVR--DILFDVK  327 (376)
T ss_pred             cCccchhhhHHhhhhhhheeecccCCCcceEEEeccc-cCceeEEEeeecccccccCccccccCCcHHHHH--HHhhhcc
Confidence            000        000  011111111 12333333111 1121222332222  22211 122   222222  2566778


Q ss_pred             CCEEEEEEcCceEEEEEEE
Q 005459          553 EDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       553 ~~~llv~~~d~~~~l~~~~  571 (696)
                      ++.+.+++.|+.+.+|..+
T Consensus       328 ~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  328 NDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             cceeeccCCCceEEEEecC
Confidence            8999999999999999863

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=4.9e-10  Score=105.02  Aligned_cols=238  Identities=15%  Similarity=0.165  Sum_probs=150.0

Q ss_pred             EEEcCCCcEEEEEecCCeEEEEEccCCC---------ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEE
Q 005459          262 ASIAPEQQILAVGTRRGVVELYDLAESA---------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT  332 (696)
Q Consensus       262 v~~sp~~~~la~g~~dg~v~vw~~~~~~---------~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~  332 (696)
                      -+++|.+++|+.|..+|+|.+..++.-.         ..+-..+        +|.|+|..|+|..  ..|.+|+. |.|+
T Consensus        16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eq--------ahdgpiy~~~f~d--~~Lls~gd-G~V~   84 (325)
T KOG0649|consen   16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQ--------AHDGPIYYLAFHD--DFLLSGGD-GLVY   84 (325)
T ss_pred             HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeecc--------ccCCCeeeeeeeh--hheeeccC-ceEE
Confidence            5789999999999999999999987521         1122223        4999999999983  46777766 9999


Q ss_pred             EEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeecc
Q 005459          333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRG  409 (696)
Q Consensus       333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~  409 (696)
                      =|.-.......                             .+-..|......-.-..  ....|  ..+.| ..+++.++
T Consensus        85 gw~W~E~~es~-----------------------------~~K~lwe~~~P~~~~~~--evPeINam~ldP~enSi~~Ag  133 (325)
T KOG0649|consen   85 GWEWNEEEESL-----------------------------ATKRLWEVKIPMQVDAV--EVPEINAMWLDPSENSILFAG  133 (325)
T ss_pred             Eeeehhhhhhc-----------------------------cchhhhhhcCccccCcc--cCCccceeEeccCCCcEEEec
Confidence            88653221000                             00011111100000000  01112  33444 55677777


Q ss_pred             CCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE-e
Q 005459          410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-V  487 (696)
Q Consensus       410 ~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~-~  487 (696)
                      .|+.++.||+..|.-                    ..+|.+|+.-|-+++--.....+.+|++||++ +||.+++|.. +
T Consensus       134 GD~~~y~~dlE~G~i--------------------~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~  193 (325)
T KOG0649|consen  134 GDGVIYQVDLEDGRI--------------------QREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM  193 (325)
T ss_pred             CCeEEEEEEecCCEE--------------------EEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE
Confidence            889999999887764                    56899999999999984444567799999999 9999999853 3


Q ss_pred             cCCccceeeeE------EEeEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEEEEEc
Q 005459          488 FGDITQEQKIQ------SKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYR  561 (696)
Q Consensus       488 f~~~~~e~~~~------v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~  561 (696)
                      .+...+++-..      +..++-..+-++++      ..-.+.+|..   ..+..-...++++++-.+.-.+|.++.++.
T Consensus       194 ie~yk~~~~lRp~~g~wigala~~edWlvCG------gGp~lslwhL---rsse~t~vfpipa~v~~v~F~~d~vl~~G~  264 (325)
T KOG0649|consen  194 IEPYKNPNLLRPDWGKWIGALAVNEDWLVCG------GGPKLSLWHL---RSSESTCVFPIPARVHLVDFVDDCVLIGGE  264 (325)
T ss_pred             eccccChhhcCcccCceeEEEeccCceEEec------CCCceeEEec---cCCCceEEEecccceeEeeeecceEEEecc
Confidence            22222222111      23455567777765      3357888844   344445677888876666666777777665


Q ss_pred             CceEEEEEE
Q 005459          562 PFDVHIFHV  570 (696)
Q Consensus       562 d~~~~l~~~  570 (696)
                      .+.+.-|.+
T Consensus       265 g~~v~~~~l  273 (325)
T KOG0649|consen  265 GNHVQSYTL  273 (325)
T ss_pred             ccceeeeee
Confidence            445555543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=1.8e-10  Score=114.34  Aligned_cols=286  Identities=9%  Similarity=0.043  Sum_probs=189.1

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC-----CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES-----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK  327 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~-----~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~  327 (696)
                      .+|.+.|. +.||.++++||+|+.|..++||+++..     .+++.....       .|..-|.|++|....+.|.+|..
T Consensus        53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~-------~H~SNIF~L~F~~~N~~~~SG~~  125 (609)
T KOG4227|consen   53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEH-------PHRSNIFSLEFDLENRFLYSGER  125 (609)
T ss_pred             hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccC-------ccccceEEEEEccCCeeEecCCC
Confidence            68999998 999999999999999999999998751     122322211       27789999999999999999999


Q ss_pred             CCcEEEEEccCCeeEEEeecc-cccceecccccCCCCCCccceecce---eeEEEcCCCc----eEEEEecCCcceE--E
Q 005459          328 SRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSSERV--L  397 (696)
Q Consensus       328 Dg~v~vW~~~~~~~~~~l~~~-~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~----~l~~~~~~~~~~v--~  397 (696)
                      +++|..-|+.+.+.+..+... ....|..+..+|.+    ..+++.+   .+.+|+....    +++..... ....  .
T Consensus       126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D----N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~-~~~F~t~  200 (609)
T KOG4227|consen  126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD----NTLIVVTRAKLVSFIDNRDRQNPISLVLPANS-GKNFYTA  200 (609)
T ss_pred             cceeEeeecccceeeeeecccCcccceeecccCCCC----ceEEEEecCceEEEEeccCCCCCCceeeecCC-Cccceee
Confidence            999999999999877766542 23468888888886    6776555   7888997643    34433322 2223  5


Q ss_pred             EEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCcc
Q 005459          398 IFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL  475 (696)
Q Consensus       398 ~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~  475 (696)
                      .|.|  -..+++.+.-+.+.+||.......++-+.+.-         .+|+    .+-.-..+-|+|.|..+.+--+...
T Consensus       201 ~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~---------~L~~----~~~~~M~~~~~~~G~Q~msiRR~~~  267 (609)
T KOG4227|consen  201 EFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFK---------GLPQ----ENTEWMGSLWSPSGNQFMSIRRGKC  267 (609)
T ss_pred             eecCCCceeEEeccccCCCCceeeccccchHHhhhccc---------cCcc----cchhhhheeeCCCCCeehhhhccCC
Confidence            5666  56778888888888999766554322221100         0111    1112246789999998877665555


Q ss_pred             E-EEEccCCceEecCCc-cceeee---EEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC--C--CCccceeE--------
Q 005459          476 I-LYDIRQKKWRVFGDI-TQEQKI---QSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--H--LDQSSLLC--------  538 (696)
Q Consensus       476 i-~w~~~sg~w~~f~~~-~~e~~~---~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~--~--l~~~~~~~--------  538 (696)
                      . +||+.+.|.-+|.-. .+..-+   ++..|++.+++-|+.    .+++..|.+|..-  +  -...++.|        
T Consensus       268 P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~t----GSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~  343 (609)
T KOG4227|consen  268 PLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVAT----GSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE  343 (609)
T ss_pred             CEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeec----cCcccceEEEecCCCccccCccccCcchhhCchh
Confidence            5 999999888777543 222222   244799988887665    2566788888642  1  11111222        


Q ss_pred             -----------Ee-ecCCccEEEEccCCEEEEEEcCceEEEEE
Q 005459          539 -----------RK-SLLAKPIVMDVYEDYILVTYRPFDVHIFH  569 (696)
Q Consensus       539 -----------~~-~~~~~~l~~~~~~~~llv~~~d~~~~l~~  569 (696)
                                 .+ .++.+ +.+++....|+..+-.+.++||.
T Consensus       344 ~~i~~~~~VLrGHRSv~NQ-VRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  344 IFIEKELTVLRGHRSVPNQ-VRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             heecceeEEEecccccccc-eeecCCcceEeccchhhheeccc
Confidence                       11 12332 55666655555566677888885

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.30  E-value=1.9e-11  Score=127.01  Aligned_cols=229  Identities=14%  Similarity=0.081  Sum_probs=149.9

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecc-----------eecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEEccCCC--
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKID-----------KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA--  289 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~v-~v~~sp~~~~la~g~~dg~v~vw~~~~~~--  289 (696)
                      ..+.+---.+++++.++++++|++....           .+.+|..+| |+++.+.+..+.+|+-||+|+.|++..+.  
T Consensus       300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp  379 (577)
T KOG0642|consen  300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP  379 (577)
T ss_pred             hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc
Confidence            3455666778889999999999984321           126798876 59999999999999999999999764211  


Q ss_pred             -------ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeeccccc-ceecccccCC
Q 005459          290 -------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS-SISSPIVKPN  361 (696)
Q Consensus       290 -------~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~-~v~~~~~sp~  361 (696)
                             .+..++.+        |++.|+.+++|+....|++++.||+++.|....... +++...... .-.++.+--.
T Consensus       380 ~ds~dp~vl~~~l~G--------htdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss  450 (577)
T KOG0642|consen  380 DDSYDPSVLSGTLLG--------HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSS  450 (577)
T ss_pred             ccccCcchhccceec--------cccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccc
Confidence                   23345555        999999999999999999999999999999877655 555432110 0011111000


Q ss_pred             CCCCccceecceeeEEEcC---CCceEEEEecC----------CcceEEEEecceeeeeccCCCCceeeeeeecCCeEEE
Q 005459          362 QDCKYEPLMSGTSMMQWDE---YGYRLYAIEEG----------SSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLV  428 (696)
Q Consensus       362 ~~~~~~~l~sg~~~~~W~~---~~~~l~~~~~~----------~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~  428 (696)
                      ..  ...+++. ......+   +...-+.++..          +...|+.-.-.....++-.|..+++.+...+.-    
T Consensus       451 ~~--a~~~~s~-~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~----  523 (577)
T KOG0642|consen  451 RP--AHSLASF-RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI----  523 (577)
T ss_pred             hh--Hhhhhhc-ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc----
Confidence            00  0011110 1111111   11111122111          111222222256667778888888888776654    


Q ss_pred             EecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       429 ~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                                      ...-..|...+.++++.|+|-+|++++.||.+ +|....+.
T Consensus       524 ----------------l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  524 ----------------LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             ----------------chheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence                            44556788889999999999999999999999 99886653

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.29  E-value=1.3e-09  Score=106.16  Aligned_cols=233  Identities=12%  Similarity=0.282  Sum_probs=142.1

Q ss_pred             EEEEeCCcEEEEEccCeEEEeecCCceeeEEE-eecChHHHhhcc-cccEEEEcCCCcEEEEEecC-------cEEEEEE
Q 005459           25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGK-YKRDSESVQREG-ENLQAVWSPDTKLIAVVTSS-------LYLHIFK   95 (696)
Q Consensus        25 v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~-~~r~~~sl~~~G-~~~~v~wsPDg~~lav~t~d-------g~l~l~~   95 (696)
                      ++|+.|..-||++.++..+|+.++ |   +.. ..|.   ....| .++.+.|+  .++||.....       +.|.|||
T Consensus        11 vs~NQD~ScFava~~~Gfriyn~~-P---~ke~~~r~---~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWD   81 (346)
T KOG2111|consen   11 VSFNQDHSCFAVATDTGFRIYNCD-P---FKESASRQ---FIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWD   81 (346)
T ss_pred             EEEccCCceEEEEecCceEEEecC-c---hhhhhhhc---cccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEe
Confidence            889999999999999999999997 6   111 1111   11122 12345555  4666664422       4577887


Q ss_pred             EEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCC
Q 005459           96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSND  175 (696)
Q Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~  175 (696)
                      =. ..            .++..+++           ...|.++...+++|++... +.|++|....+......++     
T Consensus        82 D~-k~------------~~i~el~f-----------~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~e-----  131 (346)
T KOG2111|consen   82 DL-KE------------RCIIELSF-----------NSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIE-----  131 (346)
T ss_pred             cc-cC------------cEEEEEEe-----------ccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeee-----
Confidence            11 10            11111111           1246677778888888764 5677766553332211100     


Q ss_pred             CcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeec-----
Q 005459          176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-----  250 (696)
Q Consensus       176 ~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~-----  250 (696)
                           +                     ...+++  +.  ++++..+..+...|       +...|.+++.|+..-     
T Consensus       132 -----t---------------------~~NPkG--lC--~~~~~~~k~~LafP-------g~k~GqvQi~dL~~~~~~~p  174 (346)
T KOG2111|consen  132 -----T---------------------RSNPKG--LC--SLCPTSNKSLLAFP-------GFKTGQVQIVDLASTKPNAP  174 (346)
T ss_pred             -----c---------------------ccCCCc--eE--eecCCCCceEEEcC-------CCccceEEEEEhhhcCcCCc
Confidence                 0                     000111  11  12222221111222       123455666655432     


Q ss_pred             ceecCCCCeEE-EEEcCCCcEEEEEecCCe-EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459          251 DKELGSGDAVC-ASIAPEQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS  328 (696)
Q Consensus       251 ~~~~~~~~~v~-v~~sp~~~~la~g~~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D  328 (696)
                      .....|...+. ++.|-+|.++|+++..|| ||+||..+ ++.+.+++.-      .....|.+|+||||+.+||++++-
T Consensus       175 ~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG------~d~A~iy~iaFSp~~s~LavsSdK  247 (346)
T KOG2111|consen  175 SIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRG------VDRADIYCIAFSPNSSWLAVSSDK  247 (346)
T ss_pred             eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecC------CchheEEEEEeCCCccEEEEEcCC
Confidence            22367887775 999999999999999997 59999998 7888877641      134569999999999999999999


Q ss_pred             CcEEEEEccCCe
Q 005459          329 RGLTVWSVSGCR  340 (696)
Q Consensus       329 g~v~vW~~~~~~  340 (696)
                      ||+.|+.+....
T Consensus       248 gTlHiF~l~~~~  259 (346)
T KOG2111|consen  248 GTLHIFSLRDTE  259 (346)
T ss_pred             CeEEEEEeecCC
Confidence            999999987643

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=2.2e-10  Score=125.18  Aligned_cols=207  Identities=13%  Similarity=0.133  Sum_probs=133.8

Q ss_pred             EEEEEeCCcEEEEeecc---CCceeeeeeecce--ecCCCC-eEEEEEcCCCcEEEEEe-cCCeEEEEEccCCCceeeEE
Q 005459          223 LFVLYSNGQLMSCSVSK---KGLKLAEFIKIDK--ELGSGD-AVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTV  295 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~d---~~~~~~~~~~~~~--~~~~~~-~v~v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~~~~~  295 (696)
                      ...++|||+.++..+.+   ..+.+||...++.  +..... ....+|+|||+.||+++ .+|.+.||.++..+.....+
T Consensus       208 ~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l  287 (429)
T PRK01742        208 SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQL  287 (429)
T ss_pred             cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEee
Confidence            35588999988876643   3577888766532  211111 22489999999998875 68887777654323444555


Q ss_pred             eeccCCCCCCCCCCeEEEEECCCCCeEEEEE-cCCcEEEEEccCC-eeEEEeecccccceecccccCCCCCCccceecce
Q 005459          296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT  373 (696)
Q Consensus       296 ~~~~~~~~~~h~g~V~~l~~spdg~~lasg~-~Dg~v~vW~~~~~-~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~  373 (696)
                      ..        +.+.+...+|+|||+.|+..+ .++...||++... .....+ ++ ..  ..+.|+|++    +.++...
T Consensus       288 t~--------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~-~~--~~~~~SpDG----~~ia~~~  351 (429)
T PRK01742        288 TS--------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG-RG--YSAQISADG----KTLVMIN  351 (429)
T ss_pred             cc--------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC-CC--CCccCCCCC----CEEEEEc
Confidence            55        667788999999999877655 5788999987432 112222 22 22  457899998    6554333


Q ss_pred             --eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec
Q 005459          374 --SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS  450 (696)
Q Consensus       374 --~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  450 (696)
                        .+..|+..+++...........-..+++ ++.++.++.++...+|.+...+.+                  ....+.+
T Consensus       352 ~~~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~------------------~~~~l~~  413 (429)
T PRK01742        352 GDNVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR------------------FKARLPG  413 (429)
T ss_pred             CCCEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC------------------ceEEccC
Confidence              6677998877654433332222255777 888888888888888876543221                  1344556


Q ss_pred             CCCceEEEEEcCC
Q 005459          451 QNWPVQHVAASKD  463 (696)
Q Consensus       451 ~~~~I~~va~s~d  463 (696)
                      |...++..+|||-
T Consensus       414 ~~g~~~~p~wsp~  426 (429)
T PRK01742        414 SDGQVKFPAWSPY  426 (429)
T ss_pred             CCCCCCCcccCCC
Confidence            7777888888874

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.27  E-value=3.4e-10  Score=123.55  Aligned_cols=265  Identities=14%  Similarity=0.138  Sum_probs=162.0

Q ss_pred             CCCCceEEEEEeCCc-EEEEEc-cCeEEEeecCCceeeE-EEeecChHHHhhcccccEEEEcCCCcE--EEEEecCcEEE
Q 005459           18 CPSSQQIIYFKVNNG-LLLIAS-PCHIELWSSSQHKVRL-GKYKRDSESVQREGENLQAVWSPDTKL--IAVVTSSLYLH   92 (696)
Q Consensus        18 ~~~~~~~v~fs~dg~-lla~~~-~~~v~iW~~~~~~~~l-~~~~r~~~sl~~~G~~~~v~wsPDg~~--lav~t~dg~l~   92 (696)
                      +++....+.|+|... ++|.+. +++|.+||.++++.++ .....  ....+..+++++.|-.+-.-  ++++++||.|.
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~--~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~  318 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA--LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC  318 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc--ccccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence            456677788999865 555554 7899999998554421 11111  11223467789999765544  99999999999


Q ss_pred             EEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe-eeCCCeEEEEecCCcEEEEecCCccccceeecc
Q 005459           93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI-VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVH  171 (696)
Q Consensus        93 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~-~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~  171 (696)
                      .|+++--......       +..... ...... .-....+....| ..+...+++||..|.|+.-.+.+........ -
T Consensus       319 ~W~~~~l~~P~e~-------~~~~~~-~~~~~~-~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~-~  388 (555)
T KOG1587|consen  319 SWDTDMLSLPVEG-------LLLESK-KHKGQQ-SSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVS-Y  388 (555)
T ss_pred             eeeccccccchhh-------cccccc-cccccc-cccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccc-c
Confidence            9977632211000       000000 000000 000111112222 3356889999999999886666544322000 0


Q ss_pred             CCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeee-ec
Q 005459          172 SSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI-KI  250 (696)
Q Consensus       172 ~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~-~~  250 (696)
                      +++                           .....+...|..+..+|+          +..++.++.|-++++|... ..
T Consensus       389 ~~~---------------------------~~~~~h~g~v~~v~~nPF----------~~k~fls~gDW~vriWs~~~~~  431 (555)
T KOG1587|consen  389 KGH---------------------------STFITHIGPVYAVSRNPF----------YPKNFLSVGDWTVRIWSEDVIA  431 (555)
T ss_pred             ccc---------------------------ccccccCcceEeeecCCC----------ccceeeeeccceeEeccccCCC
Confidence            000                           012345666777775554          4444445558889999865 32


Q ss_pred             cee---cCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCC-CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE
Q 005459          251 DKE---LGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV  324 (696)
Q Consensus       251 ~~~---~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las  324 (696)
                      ..+   ..+.+.+. ++|||- -..+|++..||.+.+||+... .+++.+.+.        +....+.+.|+++|+.|+.
T Consensus       432 ~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~--------~~~~l~~~~~s~~g~~lav  503 (555)
T KOG1587|consen  432 SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV--------CSPALTRVRWSPNGKLLAV  503 (555)
T ss_pred             CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc--------cccccceeecCCCCcEEEE
Confidence            222   34556566 999995 578899999999999998752 234444444        5566778899999999999


Q ss_pred             EEcCCcEEEEEccCC
Q 005459          325 GWKSRGLTVWSVSGC  339 (696)
Q Consensus       325 g~~Dg~v~vW~~~~~  339 (696)
                      |...|++.+|++...
T Consensus       504 Gd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  504 GDANGTTHILKLSES  518 (555)
T ss_pred             ecCCCcEEEEEcCch
Confidence            999999999998643

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.26  E-value=6.9e-10  Score=110.18  Aligned_cols=230  Identities=15%  Similarity=0.224  Sum_probs=150.0

Q ss_pred             eEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcc-cccEEEEcCCCcEEEEEecCc--EEEEEEEEec
Q 005459           23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVTSSL--YLHIFKVQIT   99 (696)
Q Consensus        23 ~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G-~~~~v~wsPDg~~lav~t~dg--~l~l~~l~~~   99 (696)
                      ..+.|+.|..+|++++.+.-.++..+ +-....       +....| .++...||  ++.+|+.+.+.  .+++++....
T Consensus         9 ~~~~~Nqd~~~lsvGs~~Gyk~~~~~-~~~k~~-------~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~   78 (391)
T KOG2110|consen    9 NFIGFNQDSTLLSVGSKDGYKIFSCS-PFEKCF-------SKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKK   78 (391)
T ss_pred             eeeeeccceeEEEccCCCceeEEecC-chHHhh-------cccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccC
Confidence            33558888999999999999999986 533211       111222 34567787  56777766543  3777777532


Q ss_pred             CcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCccc
Q 005459          100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA  179 (696)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~  179 (696)
                      ..             +-.+    .    +   ..+|.++..++++|+++..+. |++++.........           +
T Consensus        79 ~~-------------ICe~----~----f---pt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhT-----------I  122 (391)
T KOG2110|consen   79 TT-------------ICEI----F----F---PTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHT-----------I  122 (391)
T ss_pred             ce-------------EEEE----e----c---CCceEEEEEccceEEEEEccc-EEEEecccceeehh-----------h
Confidence            21             0000    0    0   124567777889999988766 88877665433211           1


Q ss_pred             ccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEe--CCcEEEEee--ccCCceeeeeeecce---
Q 005459          180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS--NGQLMSCSV--SKKGLKLAEFIKIDK---  252 (696)
Q Consensus       180 ~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~--dG~~~~~~~--~d~~~~~~~~~~~~~---  252 (696)
                      ..+                                  .+...+.+++++  ++.+++.-+  ..+.+.+||..+.+.   
T Consensus       123 ~t~----------------------------------~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~  168 (391)
T KOG2110|consen  123 ETT----------------------------------PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNT  168 (391)
T ss_pred             hcc----------------------------------CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeE
Confidence            111                                  011112222222  222333221  356788888876543   


Q ss_pred             ecCCCCeEE-EEEcCCCcEEEEEecCCeE-EEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc
Q 005459          253 ELGSGDAVC-ASIAPEQQILAVGTRRGVV-ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG  330 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v-~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~  330 (696)
                      +..|.+.+. ++|||+|.+||++++.|+| |||.+.+ ++.+..++.--      ..-.|.+|+|+||+++|++.+..++
T Consensus       169 I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~------~~~~IySL~Fs~ds~~L~~sS~TeT  241 (391)
T KOG2110|consen  169 INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGT------YPVSIYSLSFSPDSQFLAASSNTET  241 (391)
T ss_pred             EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCc------eeeEEEEEEECCCCCeEEEecCCCe
Confidence            367998887 9999999999999999975 9999988 77777776511      1245889999999999999999999


Q ss_pred             EEEEEccCC
Q 005459          331 LTVWSVSGC  339 (696)
Q Consensus       331 v~vW~~~~~  339 (696)
                      |.++.+...
T Consensus       242 VHiFKL~~~  250 (391)
T KOG2110|consen  242 VHIFKLEKV  250 (391)
T ss_pred             EEEEEeccc
Confidence            999988754

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.24  E-value=6e-10  Score=106.91  Aligned_cols=257  Identities=12%  Similarity=0.103  Sum_probs=155.7

Q ss_pred             CCceEEEEEeCC-cEEEEEc----c----CeEEEeecCCceeeEEEe-ecChHHH--hhcccccEEEEcCCCcEEEEEec
Q 005459           20 SSQQIIYFKVNN-GLLLIAS----P----CHIELWSSSQHKVRLGKY-KRDSESV--QREGENLQAVWSPDTKLIAVVTS   87 (696)
Q Consensus        20 ~~~~~v~fs~dg-~lla~~~----~----~~v~iW~~~~~~~~l~~~-~r~~~sl--~~~G~~~~v~wsPDg~~lav~t~   87 (696)
                      +....++-+|-+ ++||++.    +    ....||...++..+-... -.....|  +..|.+.++.|-|++..||.-+ 
T Consensus        64 gEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-  142 (370)
T KOG1007|consen   64 GEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-  142 (370)
T ss_pred             cceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-
Confidence            455556666654 5788772    2    257899985332220000 0011112  3468899999999999999876 


Q ss_pred             CcEEEEEEEEecCccccc-CCCCCCCceeeeeeEEEeeeccccccceeEEEeee-CCCeEEEEecCCcEEEEecCCcccc
Q 005459           88 SLYLHIFKVQITEKSIQI-GGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHMLLGLSDGSLYSISWKGEFYG  165 (696)
Q Consensus        88 dg~l~l~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~-~~~~llv~t~~g~i~~~~w~~~~~~  165 (696)
                      +..|.+|+++.+.+.... ......         ..+..+ ..+      ..++ .+...+.++.+++++.|+..... .
T Consensus       143 dn~i~l~~l~ess~~vaev~ss~s~---------e~~~~f-tsg------~WspHHdgnqv~tt~d~tl~~~D~RT~~-~  205 (370)
T KOG1007|consen  143 DNNIVLWSLDESSKIVAEVLSSESA---------EMRHSF-TSG------AWSPHHDGNQVATTSDSTLQFWDLRTMK-K  205 (370)
T ss_pred             cCceEEEEcccCcchheeecccccc---------ccccee-ccc------ccCCCCccceEEEeCCCcEEEEEccchh-h
Confidence            788999999876642211 000000         000000 011      2233 23456777888999875433111 1


Q ss_pred             ceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCc-EEEEeeccCCcee
Q 005459          166 AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKL  244 (696)
Q Consensus       166 ~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~  244 (696)
                      ...                                  .-..|...+++|.|.          |+-+ +++++..|+.+++
T Consensus       206 ~~s----------------------------------I~dAHgq~vrdlDfN----------pnkq~~lvt~gDdgyvri  241 (370)
T KOG1007|consen  206 NNS----------------------------------IEDAHGQRVRDLDFN----------PNKQHILVTCGDDGYVRI  241 (370)
T ss_pred             hcc----------------------------------hhhhhcceeeeccCC----------CCceEEEEEcCCCccEEE
Confidence            110                                  011344557777754          4444 4566678899999


Q ss_pred             eeeeecc----eecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCCce--------------------eeEEeec
Q 005459          245 AEFIKID----KELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASL--------------------IRTVSLY  298 (696)
Q Consensus       245 ~~~~~~~----~~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~--------------------~~~~~~~  298 (696)
                      ||.+..+    .+.+|...+. |.|||. .++|.+|+.|..|.+|........                    .+.+...
T Consensus       242 WD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg  321 (370)
T KOG1007|consen  242 WDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDG  321 (370)
T ss_pred             EeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccc
Confidence            9987653    2378999998 999995 678889999999999987541100                    0001110


Q ss_pred             cCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccC
Q 005459          299 DWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       299 ~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~  338 (696)
                      .+..-.+|...|.+++||. |-=.+|+-+.||.+.|=++..
T Consensus       322 ~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  322 QLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            1111236999999999986 777889999999987766643

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.23  E-value=1.3e-08  Score=99.59  Aligned_cols=360  Identities=17%  Similarity=0.174  Sum_probs=191.3

Q ss_pred             CceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEE-EecCcEEEEEEEEec
Q 005459           21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAV-VTSSLYLHIFKVQIT   99 (696)
Q Consensus        21 ~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav-~t~dg~l~l~~l~~~   99 (696)
                      ..+...|||+|+++|++.+..+.|=|.+ . .++..+-   ..   -..+.-+.|+-|+-.+.. ...++.+.+|++...
T Consensus        10 ~~~~c~fSp~g~yiAs~~~yrlviRd~~-t-lq~~qlf---~c---ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp   81 (447)
T KOG4497|consen   10 LNPFCSFSPCGNYIASLSRYRLVIRDSE-T-LQLHQLF---LC---LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP   81 (447)
T ss_pred             cCCceeECCCCCeeeeeeeeEEEEeccc-h-hhHHHHH---HH---HHHhhheeeeccceeeeeeeeccceEEEEEeecc
Confidence            4456789999999999998888887774 1 1111110   01   245678999999987665 556779999999632


Q ss_pred             CcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEec-CCcEEEEecCCccccceeeccCCCCCcc
Q 005459          100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSV  178 (696)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~-~g~i~~~~w~~~~~~~~~~~~~p~~~~~  178 (696)
                      +               |..  .+.+    +....+..+.++|+.+|+..+. +-.|.+|+.......             
T Consensus        82 e---------------w~c--kIde----g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-------------  127 (447)
T KOG4497|consen   82 E---------------WYC--KIDE----GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-------------  127 (447)
T ss_pred             e---------------eEE--Eecc----CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-------------
Confidence            2               100  1111    1111233467888877776543 345555443322111             


Q ss_pred             cccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-----
Q 005459          179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----  253 (696)
Q Consensus       179 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-----  253 (696)
                                              .+.-.+..+.          -.+|.+||++.+..+........++...+.|     
T Consensus       128 ------------------------~~~~pK~~~k----------g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~  173 (447)
T KOG4497|consen  128 ------------------------LLPHPKTNVK----------GYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKE  173 (447)
T ss_pred             ------------------------EecccccCce----------eEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHh
Confidence                                    0000011122          2458899998887665422211121111111     


Q ss_pred             --cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459          254 --LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL  331 (696)
Q Consensus       254 --~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v  331 (696)
                        ....+.+-+.|+|||+.||+         ||---  +  ..+-..+      -.-.+..++|||-++.||+|+.|+.+
T Consensus       174 f~~dT~DltgieWsPdg~~laV---------wd~~L--e--ykv~aYe------~~lG~k~v~wsP~~qflavGsyD~~l  234 (447)
T KOG4497|consen  174 FKLDTIDLTGIEWSPDGNWLAV---------WDNVL--E--YKVYAYE------RGLGLKFVEWSPCNQFLAVGSYDQML  234 (447)
T ss_pred             cCCCcccccCceECCCCcEEEE---------ecchh--h--heeeeee------eccceeEEEeccccceEEeeccchhh
Confidence              12234444999999998875         44211  0  0000100      12358999999999999999999999


Q ss_pred             EEEEccCCeeEEEeecccccce--------------------ecccccCCCCCCccceecceeeEEEcCC--CceE----
Q 005459          332 TVWSVSGCRLMSTIRQISLSSI--------------------SSPIVKPNQDCKYEPLMSGTSMMQWDEY--GYRL----  385 (696)
Q Consensus       332 ~vW~~~~~~~~~~l~~~~~~~v--------------------~~~~~sp~~~~~~~~l~sg~~~~~W~~~--~~~l----  385 (696)
                      |+-+-.+-+.+..+- | ..++                    .++.|-|...          ....|...  .|+.    
T Consensus       235 rvlnh~tWk~f~efl-h-l~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~----------~a~~~~~se~~YE~~~~p  302 (447)
T KOG4497|consen  235 RVLNHFTWKPFGEFL-H-LCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDL----------EAHIWEESETIYEQQMTP  302 (447)
T ss_pred             hhhceeeeeehhhhc-c-chhccCchhhhhhhhhcchhhhcccccccCCCcc----------ccCccccchhhhhhhhcc
Confidence            885543322211111 0 1111                    1222222210          11122111  0111    


Q ss_pred             --EEEecC------Ccc--eEEEEec-ceeeeeccCCC--CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCC
Q 005459          386 --YAIEEG------SSE--RVLIFSF-GKCCLNRGVSG--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN  452 (696)
Q Consensus       386 --~~~~~~------~~~--~v~~~~~-~~~~~s~~~d~--~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  452 (696)
                        +...+.      ...  ..++|+. ...++|.+...  .+-+||+..-+                     ..+.+-..
T Consensus       303 v~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~---------------------l~avLiQk  361 (447)
T KOG4497|consen  303 VKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK---------------------LHAVLIQK  361 (447)
T ss_pred             eeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh---------------------hhhhhhhc
Confidence              111111      111  1266666 55666665544  34455543322                     12334456


Q ss_pred             CceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEE
Q 005459          453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVC  512 (696)
Q Consensus       453 ~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~  512 (696)
                      .||++..|+|.-..|++....... +|....-  ...+..  ...|.+..++|.  ++.++.+
T Consensus       362 ~piraf~WdP~~prL~vctg~srLY~W~psg~--~~V~vP--~~GF~i~~l~W~~~g~~i~l~  420 (447)
T KOG4497|consen  362 HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP--RVVGVP--KKGFNIQKLQWLQPGEFIVLC  420 (447)
T ss_pred             cceeEEEeCCCCceEEEEcCCceEEEEcCCCc--eEEecC--CCCceeeeEEecCCCcEEEEE
Confidence            799999999998887776655556 8877542  222332  234889999997  5566655

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.23  E-value=6.7e-11  Score=122.22  Aligned_cols=163  Identities=21%  Similarity=0.270  Sum_probs=117.8

Q ss_pred             CCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCC
Q 005459          306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG  382 (696)
Q Consensus       306 h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~  382 (696)
                      |+|-|+|++|+.||..||+|++|-.+.|||.+..++++.+...|...|.++.|-|..  +.+.++||.   .++++|...
T Consensus        49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t--nnriv~sgAgDk~i~lfdl~~  126 (758)
T KOG1310|consen   49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT--NNRIVLSGAGDKLIKLFDLDS  126 (758)
T ss_pred             ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC--CCeEEEeccCcceEEEEeccc
Confidence            999999999999999999999999999999999999999987668899999998864  447788876   788888763


Q ss_pred             c----------eEEEEecCCcceE--EEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee
Q 005459          383 Y----------RLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY  448 (696)
Q Consensus       383 ~----------~l~~~~~~~~~~v--~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  448 (696)
                      .          +......-|.++|  ++..+  -..+.+++.||+++-+|+......-   ...+.+       +....|
T Consensus       127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~---p~~~~~-------~~l~ny  196 (758)
T KOG1310|consen  127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN---PDEDCP-------SILVNY  196 (758)
T ss_pred             ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC---cccccc-------HHHHHh
Confidence            1          1122223456666  44444  3677899999999988876533200   000000       001122


Q ss_pred             ecCCCceEEEEEcCCC-CEEEEEeCCccE-EEEc
Q 005459          449 ISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       449 ~~~~~~I~~va~s~dG-~~la~ag~dG~i-~w~~  480 (696)
                      ...--...++.+||.. .|||+||.|-++ +||.
T Consensus       197 ~~~lielk~ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  197 NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             chhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence            2222347899999965 589999999999 9995

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.22  E-value=7.2e-10  Score=122.73  Aligned_cols=282  Identities=15%  Similarity=0.103  Sum_probs=184.3

Q ss_pred             EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccC
Q 005459          261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~  338 (696)
                      .+-|+|=...++++...-.|+|||.+. ++.+..+.....     -...|+.|.+-.  |-..|.+|+.||.||||+-+-
T Consensus      1069 ~~~~hpf~p~i~~ad~r~~i~vwd~e~-~~~l~~F~n~~~-----~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1069 TLKFHPFEPQIAAADDRERIRVWDWEK-GRLLNGFDNGAF-----PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred             eeeecCCCceeEEcCCcceEEEEeccc-CceeccccCCCC-----CCCccceeeeecccchhheeeeccCceEEEecccc
Confidence            378888888899998888999999987 666555544221     234689998865  667899999999999997532


Q ss_pred             -----CeeEEEeec---cccc-ceecccccCCCCCCccceecce--eeEEEcCCCceEEEEecCC-cceEEEEec----c
Q 005459          339 -----CRLMSTIRQ---ISLS-SISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGS-SERVLIFSF----G  402 (696)
Q Consensus       339 -----~~~~~~l~~---~~~~-~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~-~~~v~~~~~----~  402 (696)
                           .+++....+   +-.. .-+.+.++=. .++...+.+|.  .+++||.+...+....... ...+.+++.    +
T Consensus      1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWq-Q~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQ-QQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred             cccCCceeEEeeccccccCccCCCCCeeeehh-hhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence                 233332221   1000 0000111100 12336677774  8999999988777765433 334566665    7


Q ss_pred             eeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCc--eEEEEEcCCCCE-EEEEeCCccE-EE
Q 005459          403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP--VQHVAASKDGMF-LAVAGLHGLI-LY  478 (696)
Q Consensus       403 ~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~--I~~va~s~dG~~-la~ag~dG~i-~w  478 (696)
                      ..++.|..||+++++|......+-                 ....|..|+.+  |..+.+-+.|-- |++|+.+|.| +|
T Consensus      1222 n~i~AGfaDGsvRvyD~R~a~~ds-----------------~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDS-----------------LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLL 1284 (1387)
T ss_pred             ceEEEeecCCceEEeecccCCccc-----------------cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEE
Confidence            889999999999999977655421                 24577888887  999999998865 9999999999 99


Q ss_pred             EccCCceEecCCccceeee--EEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC-CCCc------cceeEEeecCCccEEE
Q 005459          479 DIRQKKWRVFGDITQEQKI--QSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQ------SSLLCRKSLLAKPIVM  549 (696)
Q Consensus       479 ~~~sg~w~~f~~~~~e~~~--~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~-~l~~------~~~~~~~~~~~~~l~~  549 (696)
                      |++...-..|-+...+.++  ..+.|.-+.+--+.||.   +. .+|++|+.. .+.+      .++..+. ...--+.|
T Consensus      1285 DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsG---s~-q~ikIy~~~G~~l~~~k~n~~F~~q~~-gs~scL~F 1359 (1387)
T KOG1517|consen 1285 DLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASG---SA-QLIKIYSLSGEQLNIIKYNPGFMGQRI-GSVSCLAF 1359 (1387)
T ss_pred             ecccCcccccceeeeccccCccceeeeeccCCCeeeec---Cc-ceEEEEecChhhhcccccCcccccCcC-CCcceeee
Confidence            9987432333322222221  25567777655444422   22 789999986 2222      1222222 11123566


Q ss_pred             EccCCEEEEEEcCceEEEEEEE
Q 005459          550 DVYEDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       550 ~~~~~~llv~~~d~~~~l~~~~  571 (696)
                      .+..-.++++++|+.|.||..+
T Consensus      1360 HP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred             cchhHhhhhccCCceEEEeecC
Confidence            6777778889999999999765

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.21  E-value=5.7e-10  Score=108.71  Aligned_cols=236  Identities=15%  Similarity=0.179  Sum_probs=161.2

Q ss_pred             CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCC--ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459          257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW  334 (696)
Q Consensus       257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW  334 (696)
                      ...+|-+||+|...+|++.++..|.||......  +..++++.        |...|+.+.|+|.++.|++++.|+.-.||
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~--------Hd~~vtgvdWap~snrIvtcs~drnayVw   82 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE--------HDKIVTGVDWAPKSNRIVTCSHDRNAYVW   82 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhh--------hCcceeEEeecCCCCceeEccCCCCcccc
Confidence            455679999999999999999999999987622  45667777        99999999999999999999999999999


Q ss_pred             Ec-cCCeeEE--EeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEe----cCCcceEEEEec---
Q 005459          335 SV-SGCRLMS--TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE----EGSSERVLIFSF---  401 (696)
Q Consensus       335 ~~-~~~~~~~--~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~----~~~~~~v~~~~~---  401 (696)
                      .. .++.-..  .|..+ ...++++.++|.+    ..++.|+   .+-+|..++..-+-+.    ..+...|..++.   
T Consensus        83 ~~~~~~~WkptlvLlRi-NrAAt~V~WsP~e----nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn  157 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRI-NRAATCVKWSPKE----NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN  157 (361)
T ss_pred             ccCCCCeeccceeEEEe-ccceeeEeecCcC----ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence            98 5654332  23334 5668999999998    7788776   5666766665555332    234556666655   


Q ss_pred             ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCc-ceeE----EeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE
Q 005459          402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE-LKIL----HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI  476 (696)
Q Consensus       402 ~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~-~~w~----~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i  476 (696)
                      .-.+++|+.|+..+++..       |+-+-++.+. .-|-    ..++-..|....+.|..+.|||+|..||-.+.|+.+
T Consensus       158 nVLlaaGs~D~k~rVfSa-------yIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v  230 (361)
T KOG1523|consen  158 NVLLAAGSTDGKCRVFSA-------YIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV  230 (361)
T ss_pred             cceecccccCcceeEEEE-------eeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence            556778899998887653       2333233332 1231    111222343456679999999999999999999999


Q ss_pred             -EEEccCCceEecCCccceeeeEEEeEeeeC-cEEEEEEe
Q 005459          477 -LYDIRQKKWRVFGDITQEQKIQSKGLLWLG-KIIVVCNY  514 (696)
Q Consensus       477 -~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~-~~lv~~~~  514 (696)
                       +=|....+-+. ....+++ ..-..+.|-. +.+|+++|
T Consensus       231 ~~~da~~p~~~v-~~~~~~~-lP~ls~~~ise~~vv~ag~  268 (361)
T KOG1523|consen  231 SFVDAAGPSERV-QSVATAQ-LPLLSVSWISENSVVAAGY  268 (361)
T ss_pred             EEeecCCCchhc-cchhhcc-CCceeeEeecCCceeecCC
Confidence             66665543111 1112222 2344667753 44555433

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.21  E-value=3e-10  Score=107.77  Aligned_cols=153  Identities=17%  Similarity=0.109  Sum_probs=103.8

Q ss_pred             cEEEEEecCCeEEEEEccCCCceeeEEeeccC--CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459          269 QILAVGTRRGVVELYDLAESASLIRTVSLYDW--GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR  346 (696)
Q Consensus       269 ~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~--~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~  346 (696)
                      -+++.|.++|.|.+||+.+ +..+-.++..-.  -....|.++|.++.|.+.-..=++|+.+..+.+|++.......+++
T Consensus       166 ~lllaGyEsghvv~wd~S~-~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~  244 (323)
T KOG0322|consen  166 FLLLAGYESGHVVIWDLST-GDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR  244 (323)
T ss_pred             EEEEEeccCCeEEEEEccC-CceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence            3678899999999999988 422222221110  1122499999999999866666788888889999886432111111


Q ss_pred             cccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCe
Q 005459          347 QISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDR  425 (696)
Q Consensus       347 ~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~  425 (696)
                      ..                                      ..++...-.=+.+.+ +|.++|++.|+.++++...+... 
T Consensus       245 ~e--------------------------------------~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p-  285 (323)
T KOG0322|consen  245 KE--------------------------------------ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP-  285 (323)
T ss_pred             ce--------------------------------------EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc-
Confidence            10                                      000000000133444 67788999999998877555443 


Q ss_pred             EEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459          426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       426 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~  480 (696)
                                         ...+.-|...|.++||+||...+|.||.|+.| +|++
T Consensus       286 -------------------LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  286 -------------------LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             -------------------hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence                               55666788999999999999999999999999 9985

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.20  E-value=1.7e-09  Score=104.33  Aligned_cols=111  Identities=19%  Similarity=0.286  Sum_probs=76.7

Q ss_pred             cEEEEEEccCcceEEEEEeCCcEEEEee--ccCCceeeeeeecceecCCCCeE-EEEEcCCCcEEEEEec---CCeEEEE
Q 005459          210 AIIWLELCLPMRLLFVLYSNGQLMSCSV--SKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTR---RGVVELY  283 (696)
Q Consensus       210 ~i~~~~~~~~~~~~~~~s~dG~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~v-~v~~sp~~~~la~g~~---dg~v~vw  283 (696)
                      .|.+++|          +|+|+.+++..  .+..+.+||........-+.... .+.|||+|++||+|+.   .|.|.+|
T Consensus        61 ~I~~~~W----------sP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~w  130 (194)
T PF08662_consen   61 PIHDVAW----------SPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFW  130 (194)
T ss_pred             ceEEEEE----------CcCCCEEEEEEccCCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEE
Confidence            4777664          55565544332  34577888875222122223334 4999999999999874   4779999


Q ss_pred             EccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc------CCcEEEEEccCCee
Q 005459          284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCRL  341 (696)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~------Dg~v~vW~~~~~~~  341 (696)
                      |+++ .+.+.+..         |. .+..++|||||++|+++..      |++++||+..|..+
T Consensus       131 d~~~-~~~i~~~~---------~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l  183 (194)
T PF08662_consen  131 DVRK-KKKISTFE---------HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL  183 (194)
T ss_pred             ECCC-CEEeeccc---------cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence            9986 55554433         33 4789999999999999864      89999999876643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=2.8e-09  Score=116.29  Aligned_cols=234  Identities=12%  Similarity=0.070  Sum_probs=131.6

Q ss_pred             CeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec---CcEEEEEEEEecCcccccCCCCCCCceee
Q 005459           40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS---SLYLHIFKVQITEKSIQIGGKQPSGLFFI  116 (696)
Q Consensus        40 ~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~---dg~l~l~~l~~~~~~~~~~~~~~~~~~~~  116 (696)
                      ..|.+||.. ... ...+.+      ..+.+...+|||||+.||..+.   +..|.+|++..+.......          
T Consensus       179 ~~l~~~d~d-g~~-~~~lt~------~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~----------  240 (429)
T PRK03629        179 YELRVSDYD-GYN-QFVVHR------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS----------  240 (429)
T ss_pred             eeEEEEcCC-CCC-CEEeec------CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC----------
Confidence            368888874 221 111222      1245678999999999997653   3467888876543211100          


Q ss_pred             eeeEEEeeeccccccceeEEEeeeCCCeEEEE-ecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccC
Q 005459          117 KISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG-LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT  195 (696)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~-t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~  195 (696)
                                 ..+.. .-..+++|++.|+.. ..+|...++.|+.+......+                          
T Consensus       241 -----------~~~~~-~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l--------------------------  282 (429)
T PRK03629        241 -----------FPRHN-GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV--------------------------  282 (429)
T ss_pred             -----------CCCCc-CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc--------------------------
Confidence                       01111 113678889888875 345543333344322211100                          


Q ss_pred             CCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeecc-CCceeee--eeecc--eecCCCCeE-EEEEcCCCc
Q 005459          196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLAE--FIKID--KELGSGDAV-CASIAPEQQ  269 (696)
Q Consensus       196 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d-~~~~~~~--~~~~~--~~~~~~~~v-~v~~sp~~~  269 (696)
                               ......+.          ...++|||+.++..+.+ +..++|.  ...++  .+..+.... ..+|+|||+
T Consensus       283 ---------t~~~~~~~----------~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~  343 (429)
T PRK03629        283 ---------TDGRSNNT----------EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGK  343 (429)
T ss_pred             ---------cCCCCCcC----------ceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCC
Confidence                     00011111          24578888877766653 4455553  32221  122222223 388999999


Q ss_pred             EEEEEecC---CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc---EEEEEccCCeeEE
Q 005459          270 ILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG---LTVWSVSGCRLMS  343 (696)
Q Consensus       270 ~la~g~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~---v~vW~~~~~~~~~  343 (696)
                      .||..+.+   ..|.+||+++ +. .+.+..         .......+|||||+.|+.++.|++   +.++++.++ ...
T Consensus       344 ~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~---------~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~-~~~  411 (429)
T PRK03629        344 FMVMVSSNGGQQHIAKQDLAT-GG-VQVLTD---------TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKA  411 (429)
T ss_pred             EEEEEEccCCCceEEEEECCC-CC-eEEeCC---------CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC-CeE
Confidence            99887654   3577888876 33 333332         112346789999999999998876   667777554 455


Q ss_pred             EeecccccceecccccCC
Q 005459          344 TIRQISLSSISSPIVKPN  361 (696)
Q Consensus       344 ~l~~~~~~~v~~~~~sp~  361 (696)
                      .+.++ ...+..++|+|.
T Consensus       412 ~l~~~-~~~~~~p~Wsp~  428 (429)
T PRK03629        412 RLPAT-DGQVKFPAWSPY  428 (429)
T ss_pred             ECccC-CCCcCCcccCCC
Confidence            66655 456777888773

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.17  E-value=1e-09  Score=107.01  Aligned_cols=130  Identities=13%  Similarity=0.201  Sum_probs=89.3

Q ss_pred             ceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEE-EEecCCeEEEEEccCCCceeeEEe
Q 005459          221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILA-VGTRRGVVELYDLAESASLIRTVS  296 (696)
Q Consensus       221 ~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la-~g~~dg~v~vw~~~~~~~~~~~~~  296 (696)
                      +.++.|+|+|+.+++.+.- .+-+-|..+.+..   ......+.+.|..|...+. ....|+.|.+|++.. .+-.-.+.
T Consensus        11 ~~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q-pew~ckId   88 (447)
T KOG4497|consen   11 NPFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ-PEWYCKID   88 (447)
T ss_pred             CCceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeec-ceeEEEec
Confidence            3467899999999977654 3444454443321   1123455588988876655 567899999999976 44444444


Q ss_pred             eccCCCCCCCCCCeEEEEECCCCCeE-EEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459          297 LYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       297 ~~~~~~~~~h~g~V~~l~~spdg~~l-asg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      .        -..++.+++|||||+.| .+..-|-.|.||++.+..... + .|-...+..++|+|++
T Consensus        89 e--------g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~-~~pK~~~kg~~f~~dg  145 (447)
T KOG4497|consen   89 E--------GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-L-PHPKTNVKGYAFHPDG  145 (447)
T ss_pred             c--------CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-e-cccccCceeEEECCCC
Confidence            4        56789999999999655 556668899999998775432 2 2324456788899998

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.16  E-value=2.4e-09  Score=106.50  Aligned_cols=251  Identities=12%  Similarity=0.096  Sum_probs=153.2

Q ss_pred             EEeCCcEEEEeeccCCceeeeeeeccee--cCCC---CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSG---DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~---~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      |....+.++++..++++...|+.+.+.+  ..|+   ++|. +..+|..+.+|+.+.+|.|.+||.++...++..+-.. 
T Consensus       113 F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A-  191 (609)
T KOG4227|consen  113 FDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA-  191 (609)
T ss_pred             EccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec-
Confidence            3334444555555555555555544433  2333   3777 9999999999999999999999998733333322221 


Q ss_pred             CCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCee-------EEEeecccccceecccccCCCCCCccceec
Q 005459          300 WGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRL-------MSTIRQISLSSISSPIVKPNQDCKYEPLMS  371 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~-------~~~l~~~~~~~v~~~~~sp~~~~~~~~l~s  371 (696)
                           +......++.|.| .-.+|++.+..+++-+||......       ...|+.. ...-.++.|+|++    ..+++
T Consensus       192 -----N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~-~~~~M~~~~~~~G----~Q~ms  261 (609)
T KOG4227|consen  192 -----NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQE-NTEWMGSLWSPSG----NQFMS  261 (609)
T ss_pred             -----CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCccc-chhhhheeeCCCC----Ceehh
Confidence                 1344577889999 566888999999999999853210       1112211 1112456778877    44442


Q ss_pred             c---eeeEEEcCCCceEEEEecCCcc-------eEEEEec--ceeeeeccCCCCceeeeeeecCCeEEEE-ecCCCCcce
Q 005459          372 G---TSMMQWDEYGYRLYAIEEGSSE-------RVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVV-QSEDTDELK  438 (696)
Q Consensus       372 g---~~~~~W~~~~~~l~~~~~~~~~-------~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~-~~~~~~~~~  438 (696)
                      =   -.-+.++.-..++...-..|..       .+-...|  ...+++|+.+-.+++|.+....+.--+. -|.+..++.
T Consensus       262 iRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~  341 (609)
T KOG4227|consen  262 IRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMP  341 (609)
T ss_pred             hhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCc
Confidence            1   1344566655555444333322       1222233  4568899999999999876544422111 122222211


Q ss_pred             e--EEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEe
Q 005459          439 I--LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV  487 (696)
Q Consensus       439 w--~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~  487 (696)
                      -  -.-.-...+.+|..-+..+.|+|....|++.|-...+ +|+-...-|..
T Consensus       342 ~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r~P~~~  393 (609)
T KOG4227|consen  342 SEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRLPWSY  393 (609)
T ss_pred             hhheecceeEEEecccccccceeecCCcceEeccchhhheeccccccCCccc
Confidence            0  0111233567999999999999999999999999999 99877666653

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.16  E-value=3.1e-11  Score=130.21  Aligned_cols=215  Identities=17%  Similarity=0.215  Sum_probs=159.1

Q ss_pred             eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc
Q 005459          252 KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG  330 (696)
Q Consensus       252 ~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~  330 (696)
                      .+.+|..+|. +.|...|++|.+|+.|..|+||..++ ..+.....+        |.+.++.++.+.....+|+++.|..
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et-~~~lAs~rG--------hs~ditdlavs~~n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET-ARCLASCRG--------HSGDITDLAVSSNNTMIAAASNDKV  255 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccc-hhhhccCCC--------CccccchhccchhhhhhhhcccCce
Confidence            3478998886 88999999999999999999999887 888888888        9999999999999999999999999


Q ss_pred             EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEe---c-CCcceEEEEec---
Q 005459          331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIE---E-GSSERVLIFSF---  401 (696)
Q Consensus       331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~---~-~~~~~v~~~~~---  401 (696)
                      |++|-+..+.++..|+|| ++.|++++|+|-.       .++.  ++.+|+.+=.-+...-   . ...+.+..+-+   
T Consensus       256 IrvWrl~~~~pvsvLrgh-tgavtaiafsP~~-------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~  327 (1113)
T KOG0644|consen  256 IRVWRLPDGAPVSVLRGH-TGAVTAIAFSPRA-------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENN  327 (1113)
T ss_pred             EEEEecCCCchHHHHhcc-ccceeeeccCccc-------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccc
Confidence            999999999999999999 8899999999974       1222  8899998711111110   0 01122333333   


Q ss_pred             ceeeeeccCCCCceeeeeeecC---CeE-EEEecCCCCc-----------ceeE--EeecCeeeecCCCceEEEEEcCCC
Q 005459          402 GKCCLNRGVSGMTYARQVIYGE---DRL-LVVQSEDTDE-----------LKIL--HLNLPVSYISQNWPVQHVAASKDG  464 (696)
Q Consensus       402 ~~~~~s~~~d~~~~~w~~~~~~---~~~-~~~~~~~~~~-----------~~w~--~~~~~~~~~~~~~~I~~va~s~dG  464 (696)
                      +...+|++.|+....|.+.+-.   ..+ ++....+...           ..|.  ..++.....+|..++..+.+.|-.
T Consensus       328 ~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn  407 (1113)
T KOG0644|consen  328 GDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN  407 (1113)
T ss_pred             ccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence            6678899999988887765432   222 2333333331           1232  223334455788899999999965


Q ss_pred             C-EEEEEeCCccE-EEEccCC
Q 005459          465 M-FLAVAGLHGLI-LYDIRQK  483 (696)
Q Consensus       465 ~-~la~ag~dG~i-~w~~~sg  483 (696)
                      . ...+||.||.. +||+-.|
T Consensus       408 ~ri~msag~dgst~iwdi~eg  428 (1113)
T KOG0644|consen  408 PRIAMSAGYDGSTIIWDIWEG  428 (1113)
T ss_pred             cHhhhhccCCCceEeeecccC
Confidence            5 55689999999 9998665

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.16  E-value=3.4e-10  Score=118.71  Aligned_cols=133  Identities=14%  Similarity=0.258  Sum_probs=108.6

Q ss_pred             cCCceeeeeeecceec-------CCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCC------ceeeEEeeccCCCC
Q 005459          239 KKGLKLAEFIKIDKEL-------GSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESA------SLIRTVSLYDWGYS  303 (696)
Q Consensus       239 d~~~~~~~~~~~~~~~-------~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~------~~~~~~~~~~~~~~  303 (696)
                      .+.+-++++..+.++.       .....+. +.|+| |...||+|+.||.|++|.+..++      .+...+..      
T Consensus       602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~------  675 (1012)
T KOG1445|consen  602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTI------  675 (1012)
T ss_pred             CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeec------
Confidence            4556677766654441       2344566 99999 88999999999999999998643      23345666      


Q ss_pred             CCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEc
Q 005459          304 MDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD  379 (696)
Q Consensus       304 ~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~  379 (696)
                        |...|.++.|.| -...||+++.|-+|++||+..+...+.|.+| ++.|..++|||+|    +.+++-+   +++++.
T Consensus       676 --h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gH-tdqIf~~AWSpdG----r~~AtVcKDg~~rVy~  748 (1012)
T KOG1445|consen  676 --HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGH-TDQIFGIAWSPDG----RRIATVCKDGTLRVYE  748 (1012)
T ss_pred             --ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccC-cCceeEEEECCCC----cceeeeecCceEEEeC
Confidence              999999999999 5669999999999999999999999999999 8889999999999    8888766   888998


Q ss_pred             CCCce
Q 005459          380 EYGYR  384 (696)
Q Consensus       380 ~~~~~  384 (696)
                      +..++
T Consensus       749 Prs~e  753 (1012)
T KOG1445|consen  749 PRSRE  753 (1012)
T ss_pred             CCCCC
Confidence            87654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.12  E-value=8.1e-07  Score=104.55  Aligned_cols=438  Identities=15%  Similarity=0.173  Sum_probs=211.6

Q ss_pred             hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeE--EEeeeCCC
Q 005459           66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNK  143 (696)
Q Consensus        66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~~~~~  143 (696)
                      ..+.++++.+-+|...+++++.+|.|.++..+......          .+       +.   ++.-+..|  .+++||.+
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~----------~~-------E~---VG~vd~GI~a~~WSPD~E  133 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED----------EI-------EI---VGSVDSGILAASWSPDEE  133 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc----------ee-------EE---EEEEcCcEEEEEECCCcC
Confidence            34788999999999999999999999998554211100          00       00   01112233  35688889


Q ss_pred             eEEEEecCCcEEEEecCCccccceeeccCCCC-Ccccccccc-cCCCCcccccCCCcc----ccCCcCCCcccEEEEEEc
Q 005459          144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSND-SSVAALSHH-FPSNGLASVDTSGAF----VSDHKFPISSAIIWLELC  217 (696)
Q Consensus       144 ~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~-~~~~~~~~~-s~~~~l~~~~~~~~~----~~~~~~~~~~~i~~~~~~  217 (696)
                      .+++.|.+|.+..+.-+-+...+..++..... +..+. +.- ...-|+-  +..+..    .+.+..+ +.....+. .
T Consensus       134 lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~Vs-VGWGkKeTQF~--Gs~gK~aa~~~~~p~~~-~~d~~~~s-~  208 (928)
T PF04762_consen  134 LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVS-VGWGKKETQFH--GSAGKAAARQLRDPTVP-KVDEGKLS-W  208 (928)
T ss_pred             EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceee-eccCcccCccC--cchhhhhhhhccCCCCC-ccccCccc-c
Confidence            99999999999887544333222222110000 00000 000 0000110  000000    0000000 00001111 1


Q ss_pred             cCcceEEEEEeCCcEEEEeec------cCCceeeeeeeccee--cCCCCeE--EEEEcCCCcEEEEEec---CCeEEEEE
Q 005459          218 LPMRLLFVLYSNGQLMSCSVS------KKGLKLAEFIKIDKE--LGSGDAV--CASIAPEQQILAVGTR---RGVVELYD  284 (696)
Q Consensus       218 ~~~~~~~~~s~dG~~~~~~~~------d~~~~~~~~~~~~~~--~~~~~~v--~v~~sp~~~~la~g~~---dg~v~vw~  284 (696)
                      .+....+.+-.||+++++.+-      ...+++|+-. ++..  ....+..  +++|.|.|++||+...   .-.|.+|.
T Consensus       209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE  287 (928)
T PF04762_consen  209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE  287 (928)
T ss_pred             CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe
Confidence            122334556678888887763      2456778754 2211  1111222  3899999999999875   34566666


Q ss_pred             ccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe--eEEEeecccccceecccccCCC
Q 005459          285 LAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~--~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      -+  |..-..+...   . ......|..|+|++|+..||.--.| .|.+|...+.+  +.+.+.-.....          
T Consensus       288 rN--GLrhgeF~l~---~-~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~----------  350 (928)
T PF04762_consen  288 RN--GLRHGEFTLR---F-DPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSES----------  350 (928)
T ss_pred             cC--CcEeeeEecC---C-CCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEccCCCC----------
Confidence            33  3222223321   1 0145679999999999999997765 49999987765  222222110010          


Q ss_pred             CCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecc-eeeeecc---CCCCceeeeeeecCCeEEEEecCCCCcce
Q 005459          363 DCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFG-KCCLNRG---VSGMTYARQVIYGEDRLLVVQSEDTDELK  438 (696)
Q Consensus       363 ~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~-~~~~s~~---~d~~~~~w~~~~~~~~~~~~~~~~~~~~~  438 (696)
                                .....|+++....+..... .+.+..+.+. ....+.+   .|....   .--.+.+++++.=      .
T Consensus       351 ----------~~~~~Wdpe~p~~L~v~t~-~g~~~~~~~~~~v~~s~~~~~~D~g~v---aVIDG~~lllTpf------~  410 (928)
T PF04762_consen  351 ----------VNFVKWDPEKPLRLHVLTS-NGQYEIYDFAWDVSRSPGSSPNDNGTV---AVIDGNKLLLTPF------R  410 (928)
T ss_pred             ----------CCceEECCCCCCEEEEEec-CCcEEEEEEEEEEEecCCCCccCceEE---EEEeCCeEEEecc------c
Confidence                      1225677765443333322 1333333331 1111100   011110   0111122222110      0


Q ss_pred             eEEeecCee--eecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc-eE----ecCCc---------ccee-eeEEE
Q 005459          439 ILHLNLPVS--YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK-WR----VFGDI---------TQEQ-KIQSK  500 (696)
Q Consensus       439 w~~~~~~~~--~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~-w~----~f~~~---------~~e~-~~~v~  500 (696)
                      ...+..|-.  ...-..+|..++|++++..+|+-..||.+ +|....+. |.    .+...         ..+. ....+
T Consensus       411 ~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (928)
T PF04762_consen  411 RAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLR  490 (928)
T ss_pred             ccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEE
Confidence            011111211  12345689999999999999999999988 99854432 21    01000         0111 12256


Q ss_pred             eEeeeCcEEEEEEeecCCCeEEEEEeeCCCCC-ccceeEEeecCCccEEEEccCCE--EEEEEcCceEE
Q 005459          501 GLLWLGKIIVVCNYIDSSNTYELLFYPRYHLD-QSSLLCRKSLLAKPIVMDVYEDY--ILVTYRPFDVH  566 (696)
Q Consensus       501 ~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~--llv~~~d~~~~  566 (696)
                      .++|.++..+.+..........+.+++..... ..........+.....+...++.  +++-..+|.+.
T Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~  559 (928)
T PF04762_consen  491 QLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVF  559 (928)
T ss_pred             EEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEE
Confidence            88997544333222222245677777764222 22233334445544444433332  45555566554

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.11  E-value=3.7e-09  Score=115.52  Aligned_cols=240  Identities=14%  Similarity=0.127  Sum_probs=160.6

Q ss_pred             ceEEEEEe-CCcEEEEeeccCCceeeeeeeccee---------cCCCCeEE-EEEcCC--CcEEEEEecCCeEEEEEccC
Q 005459          221 RLLFVLYS-NGQLMSCSVSKKGLKLAEFIKIDKE---------LGSGDAVC-ASIAPE--QQILAVGTRRGVVELYDLAE  287 (696)
Q Consensus       221 ~~~~~~s~-dG~~~~~~~~d~~~~~~~~~~~~~~---------~~~~~~v~-v~~sp~--~~~la~g~~dg~v~vw~~~~  287 (696)
                      ..++.|.| +..+++.+..+|.+-+||...+...         ..|.+++. +.|-.+  +.-+++++.||.|..|+++.
T Consensus       245 v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~  324 (555)
T KOG1587|consen  245 VTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDM  324 (555)
T ss_pred             eeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccc
Confidence            34444555 4566777778888888998765431         34677766 666554  34599999999999999876


Q ss_pred             CCceeeEEeec---cCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCee--------EEEeecccccceec
Q 005459          288 SASLIRTVSLY---DWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRL--------MSTIRQISLSSISS  355 (696)
Q Consensus       288 ~~~~~~~~~~~---~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~--------~~~l~~~~~~~v~~  355 (696)
                      -..+...+...   +.+....-...+++++|.| +-+.+++|.++|.|.-=+-.+.+.        ..+..-| ...|.+
T Consensus       325 l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h-~g~v~~  403 (555)
T KOG1587|consen  325 LSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITH-IGPVYA  403 (555)
T ss_pred             cccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccccc-CcceEe
Confidence            22222111110   0011112345689999998 778899999999987733332221        1122223 567888


Q ss_pred             ccccCCCCCCccceecce--eeEEEcCC-CceEEEEecCCcceE--EEEecc--eeeeeccCCCCceeeeeeecCCeEEE
Q 005459          356 PIVKPNQDCKYEPLMSGT--SMMQWDEY-GYRLYAIEEGSSERV--LIFSFG--KCCLNRGVSGMTYARQVIYGEDRLLV  428 (696)
Q Consensus       356 ~~~sp~~~~~~~~l~sg~--~~~~W~~~-~~~l~~~~~~~~~~v--~~~~~~--~~~~s~~~d~~~~~w~~~~~~~~~~~  428 (696)
                      +.++|-..   ..+.+++  ++++|... ....+.....+...|  .++++.  ..++++..||.+.+||+++...+   
T Consensus       404 v~~nPF~~---k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~---  477 (555)
T KOG1587|consen  404 VSRNPFYP---KNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE---  477 (555)
T ss_pred             eecCCCcc---ceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC---
Confidence            88888762   3333333  99999987 666666666667767  777774  45678888999999999987764   


Q ss_pred             EecCCCCcceeEEeecCe-eeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC
Q 005459          429 VQSEDTDELKILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK  483 (696)
Q Consensus       429 ~~~~~~~~~~w~~~~~~~-~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg  483 (696)
                                      |. +..-+..+...+.++++|+.||+|...|.+ +|++...
T Consensus       478 ----------------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  478 ----------------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ----------------CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence                            32 122234556778899999999999999999 9998643

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.11  E-value=6.9e-09  Score=116.96  Aligned_cols=271  Identities=14%  Similarity=0.134  Sum_probs=171.3

Q ss_pred             CCcccEEEE-EEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee----------c-CCCCeEEEEEcCCCcEEEE
Q 005459          206 PISSAIIWL-ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----------L-GSGDAVCASIAPEQQILAV  273 (696)
Q Consensus       206 ~~~~~i~~~-~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----------~-~~~~~v~v~~sp~~~~la~  273 (696)
                      .++.-|..+ +++...+..++.++++.++++++.||++++|+......-          . ..+...++..-+.+..+|+
T Consensus      1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred             ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence            344444444 455555666777778899999999999999998643211          1 1122233777788999999


Q ss_pred             EecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEE-EECC-CCC-eEEEEEcCCcEEEEEccCCeeEEEeec-cc
Q 005459          274 GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI-AWTP-DNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQ-IS  349 (696)
Q Consensus       274 g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l-~~sp-dg~-~lasg~~Dg~v~vW~~~~~~~~~~l~~-~~  349 (696)
                      |+.||.|++.+++.+............+ .....|.|.+| +|.. ++. .|+.+-..+.+..||+....-..+++. -.
T Consensus      1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~-n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIP-NLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred             EcCCCeEEEEEccccccccceeeeeecc-cccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence            9999999999998632111111000000 00123445444 5544 444 777788889999999987776666654 11


Q ss_pred             ccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEec-CCcceE--EEEec--c--eeee-ecc-CCCCceee
Q 005459          350 LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE-GSSERV--LIFSF--G--KCCL-NRG-VSGMTYAR  417 (696)
Q Consensus       350 ~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~-~~~~~v--~~~~~--~--~~~~-s~~-~d~~~~~w  417 (696)
                      .+.|++++.+|-+    .-++.|.   ...+||.+=+.++.... ++..++  +.+.+  .  ...+ +++ ..+-+.+|
T Consensus      1195 hG~vTSi~idp~~----~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWC----NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred             ccceeEEEecCCc----eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence            3569999999987    7777776   78899998666555432 223333  33443  2  2333 333 56788999


Q ss_pred             eeeecCCeEEEEecCCCCcceeEEeecCee--eecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          418 QVIYGEDRLLVVQSEDTDELKILHLNLPVS--YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                      ++..|..+..+..+.+.+.+.|..   |..  -..+.-+....++..-+..+.+||.|+.+ .||...-+
T Consensus      1271 n~~~g~~~~vl~~s~~~p~ls~~~---Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYAL---PSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred             ecccCcceEEEEcCCCCcchhhhc---ccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence            999986666566665666655521   211  01222344556666667789999999999 99986543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.10  E-value=9.3e-09  Score=98.99  Aligned_cols=233  Identities=17%  Similarity=0.227  Sum_probs=148.3

Q ss_pred             cEEEEEec----CCeEEEEEccCCC-ceeeEEeeccCCCCCCCCCCeEEEEECCCCC-----eEEEEEcCCcEEEEEccC
Q 005459          269 QILAVGTR----RGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-----AFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       269 ~~la~g~~----dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-----~lasg~~Dg~v~vW~~~~  338 (696)
                      -.||.|+-    ++.|.+-.++... +.+.. .      ..+|.-+++.+-|.||..     .||+.+.  .+|+|.+..
T Consensus        60 ~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~-a------~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~  130 (364)
T KOG0290|consen   60 FRLAVGSFIEEYNNKVQIVQLDEDSGELVED-A------NFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGD  130 (364)
T ss_pred             eeEEEeeeccccCCeeEEEEEccCCCceecc-C------CCCCCCCccceEecCCccccCcchhhcccC--eEEEEeccC
Confidence            35666652    4566666655422 22211 1      124899999999999874     6777664  899999863


Q ss_pred             --Ce--eEEEeecc----cccceecccccCCCCCCccceecce---eeEEEcCCCce---EEEEecCCcceEEEEec---
Q 005459          339 --CR--LMSTIRQI----SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR---LYAIEEGSSERVLIFSF---  401 (696)
Q Consensus       339 --~~--~~~~l~~~----~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~---l~~~~~~~~~~v~~~~~---  401 (696)
                        .+  +.+.|..+    ....+++..|...+   ..++.+.+   +..+|+++.+.   +-..+-.|+..|+.+.|   
T Consensus       131 ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d---p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~  207 (364)
T KOG0290|consen  131 EESRVELQSVLNNNKNSEFCAPLTSFDWNEVD---PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG  207 (364)
T ss_pred             cCCceehhhhhccCcccccCCcccccccccCC---cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccC
Confidence              22  22222221    13345555554332   14444444   88999998752   34455689999988887   


Q ss_pred             -ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCc------------------------ceeEEeecCe----eeecCC
Q 005459          402 -GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE------------------------LKILHLNLPV----SYISQN  452 (696)
Q Consensus       402 -~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~------------------------~~w~~~~~~~----~~~~~~  452 (696)
                       .+.++|.+.||+++++|+..-+....+|.+.....                        .....++.|.    .+.+|.
T Consensus       208 s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~  287 (364)
T KOG0290|consen  208 SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ  287 (364)
T ss_pred             ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCc
Confidence             34689999999999999999988888887654211                        1123445554    556899


Q ss_pred             CceEEEEEcCCC-CEEEEEeCCccE-EEEccCCceEecCCccc--eeeeEEEeEeee---CcEEEEEEe
Q 005459          453 WPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKKWRVFGDITQ--EQKIQSKGLLWL---GKIIVVCNY  514 (696)
Q Consensus       453 ~~I~~va~s~dG-~~la~ag~dG~i-~w~~~sg~w~~f~~~~~--e~~~~v~~~~w~---~~~lv~~~~  514 (696)
                      ..|..++|.|.. ..+++||.|..+ +||+.+---+...+...  .....|..+.|.   ++-+. .||
T Consensus       288 a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwia-i~~  355 (364)
T KOG0290|consen  288 ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIA-ICF  355 (364)
T ss_pred             ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEE-EEe
Confidence            999999999964 589999999999 99997642111111100  011237789996   44444 445

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.07  E-value=5.7e-09  Score=101.87  Aligned_cols=233  Identities=16%  Similarity=0.174  Sum_probs=152.1

Q ss_pred             EEeCCcEEEEeeccCCceeeeeeecce------ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeec
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKIDK------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY  298 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~------~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~  298 (696)
                      +.+|+..++++.+...+.+......+.      +..|...+. +.|+|..+.|++++.|..-.||...+.+.-.+++...
T Consensus        18 wn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLl   97 (361)
T KOG1523|consen   18 WNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLL   97 (361)
T ss_pred             ecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEE
Confidence            678888888888877777766544332      256888887 9999999999999999999999985535544444433


Q ss_pred             cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeE---EEeecccccceecccccCCCCCCccceecce--
Q 005459          299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM---STIRQISLSSISSPIVKPNQDCKYEPLMSGT--  373 (696)
Q Consensus       299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~---~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--  373 (696)
                      .      +.++++++.|+|.++.+|+|+.-+.|.||-.+...--   ..++-...+.|.++.++|+.    -.++.|+  
T Consensus        98 R------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn----VLlaaGs~D  167 (361)
T KOG1523|consen   98 R------INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN----VLLAAGSTD  167 (361)
T ss_pred             E------eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc----ceecccccC
Confidence            2      8899999999999999999999999999987654422   22333336789999999998    7777776  


Q ss_pred             -eeEEEcC-----CC-------------ceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEec
Q 005459          374 -SMMQWDE-----YG-------------YRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQS  431 (696)
Q Consensus       374 -~~~~W~~-----~~-------------~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~  431 (696)
                       ..++++.     +.             ++++.......+.+  +.|++ +..++=.+.|.++.+-|.....++      
T Consensus       168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~------  241 (361)
T KOG1523|consen  168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER------  241 (361)
T ss_pred             cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh------
Confidence             4444432     11             12222221223344  44555 666666667776665443332221      


Q ss_pred             CCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC-ceEec
Q 005459          432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK-KWRVF  488 (696)
Q Consensus       432 ~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg-~w~~f  488 (696)
                                   +.......-|.+++.|-.+.. ++.||.|... ++..... .|+.-
T Consensus       242 -------------v~~~~~~~lP~ls~~~ise~~-vv~ag~~c~P~lf~~~~~~~l~~~  286 (361)
T KOG1523|consen  242 -------------VQSVATAQLPLLSVSWISENS-VVAAGYDCGPVLFVTDEEGGLSFA  286 (361)
T ss_pred             -------------ccchhhccCCceeeEeecCCc-eeecCCCCCceEEEeccccceeee
Confidence                         222222235788888866655 5556666444 6655433 56543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=1.7e-08  Score=110.21  Aligned_cols=214  Identities=15%  Similarity=0.147  Sum_probs=120.3

Q ss_pred             ccccEEEEcCCCcEEEEEecC---cEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCe
Q 005459           68 GENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKH  144 (696)
Q Consensus        68 G~~~~v~wsPDg~~lav~t~d---g~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~  144 (696)
                      +.+...+|||||+.||..+.+   ..|.+||+..+......                 .    ..+ ......+++|++.
T Consensus       196 ~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~-----------------~----~~g-~~~~~~~SPDG~~  253 (427)
T PRK02889        196 EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA-----------------N----FKG-SNSAPAWSPDGRT  253 (427)
T ss_pred             CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee-----------------c----CCC-CccceEECCCCCE
Confidence            456789999999999987643   35888888654321110                 0    011 1112357788888


Q ss_pred             EEE-EecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceE
Q 005459          145 MLL-GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL  223 (696)
Q Consensus       145 llv-~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  223 (696)
                      |+. ...+|...++.++........                                   +..+....          ..
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~~~~-----------------------------------lt~~~~~~----------~~  288 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSGLRR-----------------------------------LTQSSGID----------TE  288 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCCcEE-----------------------------------CCCCCCCC----------cC
Confidence            875 455666555544422111110                                   00000001          11


Q ss_pred             EEEEeCCcEEEEeec-cCCceeeeee--ecc--eecCCCCeE-EEEEcCCCcEEEEEecCC---eEEEEEccCCCceeeE
Q 005459          224 FVLYSNGQLMSCSVS-KKGLKLAEFI--KID--KELGSGDAV-CASIAPEQQILAVGTRRG---VVELYDLAESASLIRT  294 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~-d~~~~~~~~~--~~~--~~~~~~~~v-~v~~sp~~~~la~g~~dg---~v~vw~~~~~~~~~~~  294 (696)
                      ..++|||+.++..++ ++...+|...  .++  .+....... ..+|||||++||..+.++   .|.+||+.+ ++. +.
T Consensus       289 ~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-g~~-~~  366 (427)
T PRK02889        289 PFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-GQV-TA  366 (427)
T ss_pred             eEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC-CCe-EE
Confidence            347899987776554 3556666543  111  121122222 378999999999887664   699999876 433 22


Q ss_pred             EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE---EEEEccCCeeEEEeecccccceecccccCC
Q 005459          295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL---TVWSVSGCRLMSTIRQISLSSISSPIVKPN  361 (696)
Q Consensus       295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v---~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~  361 (696)
                      +..         .+.....+|+|||+.|+.++.+++-   .+-++. +.....+..+ ...+..++|+|.
T Consensus       367 lt~---------~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~-~g~~~~p~wsp~  425 (427)
T PRK02889        367 LTD---------TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQ-GGDVREPSWGPF  425 (427)
T ss_pred             ccC---------CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecC-CCCCCCCccCCC
Confidence            322         1234678999999999988876643   333443 3344445433 334566667663

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.07  E-value=3.4e-10  Score=115.14  Aligned_cols=260  Identities=15%  Similarity=0.153  Sum_probs=183.2

Q ss_pred             CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459          257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~  336 (696)
                      .++..+.++.+|+.|+.|+.-|.|-.+|+.+ ..+...+..         ...|.++.|-.+.+++|++-. +-+.|+|-
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t-~~L~~Ei~v---------~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~  198 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT-KKLHFEINV---------METVRDVTFLHNEQFFAVAQK-KYVYVYDN  198 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeeccc-ceeeeeeeh---------hhhhhhhhhhcchHHHHhhhh-ceEEEecC
Confidence            5678899999999999999999999999988 777777765         567999999999999998876 78899997


Q ss_pred             cCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccC
Q 005459          337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGV  410 (696)
Q Consensus       337 ~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~  410 (696)
                      .|-. ++.++.+  ..|..+.|-|..    -.|++++   -...=|...|+++..+....+++  ..-.| ...+-.|..
T Consensus       199 ~GtE-lHClk~~--~~v~rLeFLPyH----fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs  271 (545)
T KOG1272|consen  199 NGTE-LHCLKRH--IRVARLEFLPYH----FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS  271 (545)
T ss_pred             CCcE-Eeehhhc--Cchhhhcccchh----heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC
Confidence            6654 6666665  458888888885    5555554   33344677777776554333333  55555 445567888


Q ss_pred             CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecC
Q 005459          411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFG  489 (696)
Q Consensus       411 d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~  489 (696)
                      .|++.+|.....+.                    ....+-|.+||+++|+.++|+|+|++|.|..+ +||+..-+ ++. 
T Consensus       272 nGtVSlWSP~skeP--------------------LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-ql~-  329 (545)
T KOG1272|consen  272 NGTVSLWSPNSKEP--------------------LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY-QLH-  329 (545)
T ss_pred             CceEEecCCCCcch--------------------HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc-ccc-
Confidence            89999998665554                    34567899999999999999999999999999 99997633 111 


Q ss_pred             CccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC-C----CCccceeEEeecCCccEEEEccCCEEEEEEcCc
Q 005459          490 DITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-H----LDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPF  563 (696)
Q Consensus       490 ~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~-~----l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~  563 (696)
                        +....+....+...+..++++++     ...+.+|.-. .    ....++-|....+-.-+-+.|++|.|-++.+.+
T Consensus       330 --t~~tp~~a~~ls~SqkglLA~~~-----G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  330 --TYRTPHPASNLSLSQKGLLALSY-----GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             --eeecCCCccccccccccceeeec-----CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence              11112334467777887777733     2568888653 2    112233344322222256667888888865544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=2.9e-08  Score=108.86  Aligned_cols=196  Identities=14%  Similarity=0.110  Sum_probs=119.1

Q ss_pred             ecCCCCeEE-EEEcCCCcEEEEEec---CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEE-EEEc
Q 005459          253 ELGSGDAVC-ASIAPEQQILAVGTR---RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWK  327 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp~~~~la~g~~---dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~la-sg~~  327 (696)
                      +..|...+. .+|+|||+.||..+.   +..|.+||+.+ ++. +.+..        +.+.+...+|||||+.|+ +.+.
T Consensus       197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~~-~~l~~--------~~g~~~~~~~SPDG~~la~~~~~  266 (435)
T PRK05137        197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQR-ELVGN--------FPGMTFAPRFSPDGRKVVMSLSQ  266 (435)
T ss_pred             EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-CcE-EEeec--------CCCcccCcEECCCCCEEEEEEec
Confidence            344555555 999999999998764   46899999976 433 34444        667788999999999876 5556


Q ss_pred             CCc--EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce------eeEEEcCCCceEEEEecCCcceE--E
Q 005459          328 SRG--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGSSERV--L  397 (696)
Q Consensus       328 Dg~--v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~~~~~~~~~v--~  397 (696)
                      ++.  |.+||+.++.. ..+..+ ......+.|+|++    +.++..+      .+..|+..+++......+ ...+  .
T Consensus       267 ~g~~~Iy~~d~~~~~~-~~Lt~~-~~~~~~~~~spDG----~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~  339 (435)
T PRK05137        267 GGNTDIYTMDLRSGTT-TRLTDS-PAIDTSPSYSPDG----SQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTP  339 (435)
T ss_pred             CCCceEEEEECCCCce-EEccCC-CCccCceeEcCCC----CEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCe
Confidence            655  66778887764 345443 3446678999998    5554322      566777777655443322 1222  4


Q ss_pred             EEec-ceeeeeccCC-C--CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCC
Q 005459          398 IFSF-GKCCLNRGVS-G--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH  473 (696)
Q Consensus       398 ~~~~-~~~~~s~~~d-~--~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~d  473 (696)
                      .+++ ++.++..+.+ +  .+.++++..+..+                      .......+...+|||||++|+..+.+
T Consensus       340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~----------------------~lt~~~~~~~p~~spDG~~i~~~~~~  397 (435)
T PRK05137        340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER----------------------ILTSGFLVEGPTWAPNGRVIMFFRQT  397 (435)
T ss_pred             EECCCCCEEEEEEcCCCceEEEEEECCCCceE----------------------eccCCCCCCCCeECCCCCEEEEEEcc
Confidence            4666 6666544332 2  2223332111111                      11112236678999999998876653


Q ss_pred             c------cE-EEEccCCceEe
Q 005459          474 G------LI-LYDIRQKKWRV  487 (696)
Q Consensus       474 G------~i-~w~~~sg~w~~  487 (696)
                      +      .+ ++++.++.-+.
T Consensus       398 ~~~~~~~~L~~~dl~g~~~~~  418 (435)
T PRK05137        398 PGSGGAPKLYTVDLTGRNERE  418 (435)
T ss_pred             CCCCCcceEEEEECCCCceEE
Confidence            2      34 66766655443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.07  E-value=8.9e-09  Score=99.26  Aligned_cols=98  Identities=22%  Similarity=0.345  Sum_probs=76.8

Q ss_pred             CCeEE-EEEcCCCcEEEEE--ecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC---Cc
Q 005459          257 GDAVC-ASIAPEQQILAVG--TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RG  330 (696)
Q Consensus       257 ~~~v~-v~~sp~~~~la~g--~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D---g~  330 (696)
                      ...+. ++|+|+++.+|+.  ..++.|.+||++  ...+..+          +.+.++.|.|||+|++|+.|+.+   |.
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~~----------~~~~~n~i~wsP~G~~l~~~g~~n~~G~  126 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFSF----------GTQPRNTISWSPDGRFLVLAGFGNLNGD  126 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEee----------cCCCceEEEECCCCCEEEEEEccCCCcE
Confidence            33466 9999999987764  467899999996  4444443          34678899999999999998754   56


Q ss_pred             EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459          331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT  373 (696)
Q Consensus       331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~  373 (696)
                      +.+||+...+.+.+.+..   .++.++|+|+|    +.++++.
T Consensus       127 l~~wd~~~~~~i~~~~~~---~~t~~~WsPdG----r~~~ta~  162 (194)
T PF08662_consen  127 LEFWDVRKKKKISTFEHS---DATDVEWSPDG----RYLATAT  162 (194)
T ss_pred             EEEEECCCCEEeeccccC---cEEEEEEcCCC----CEEEEEE
Confidence            999999988888776533   46888999999    8888665

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.04  E-value=4.5e-08  Score=97.07  Aligned_cols=170  Identities=18%  Similarity=0.235  Sum_probs=108.3

Q ss_pred             cCCCCeEEEEEcCCCcEEEEEec-CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEE
Q 005459          254 LGSGDAVCASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT  332 (696)
Q Consensus       254 ~~~~~~v~v~~sp~~~~la~g~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~  332 (696)
                      .||.-.+.++|++||..+++++- |..|.|||.++ +..++....        -.|.+.-+.|||||.+|+++.-|++.+
T Consensus       193 pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~--------glgg~slLkwSPdgd~lfaAt~davfr  263 (445)
T KOG2139|consen  193 PGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPK--------GLGGFSLLKWSPDGDVLFAATCDAVFR  263 (445)
T ss_pred             CCCceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCccccccc--------CCCceeeEEEcCCCCEEEEecccceee
Confidence            56755455999999999999875 57899999998 555544423        468899999999999999999999999


Q ss_pred             EEEccCCeeEEEeecccccceecccccCCCCCCcccee--cc-eeeEEEcCCCceEEEEecCCcceEEEEec-ceeeeec
Q 005459          333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM--SG-TSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNR  408 (696)
Q Consensus       333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~--sg-~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~  408 (696)
                      +|+......  +                      +.+.  +| ++..+|++.+..++....+ ...++.++| ++....-
T Consensus       264 lw~e~q~wt--~----------------------erw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~  318 (445)
T KOG2139|consen  264 LWQENQSWT--K----------------------ERWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFL  318 (445)
T ss_pred             eehhcccce--e----------------------cceeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCcccc
Confidence            996432210  0                      1222  22 2667888888888888765 457787777 4332221


Q ss_pred             cCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCc
Q 005459          409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG  474 (696)
Q Consensus       409 ~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG  474 (696)
                      . .+.+  |.++--.+         .++   -.+.-++.+  --+++.++||+|.|.|||+--+.+
T Consensus       319 ~-~~~~--k~~lliaD---------L~e---~ti~ag~~l--~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  319 R-PQSI--KRVLLIAD---------LQE---VTICAGQRL--CCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             C-cccc--eeeeeecc---------chh---hhhhcCccc--ccCccceeeECCCCCEEEEEEcCC
Confidence            1 1111  11111000         000   000001111  145789999999999999986654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=2.8e-08  Score=108.95  Aligned_cols=124  Identities=15%  Similarity=0.145  Sum_probs=74.1

Q ss_pred             EEEEeCCcEEEEeec-cCCceee--eeeecc--eecCCCCeE-EEEEcCCCcEEEEEecCC---eEEEEEccCCCceeeE
Q 005459          224 FVLYSNGQLMSCSVS-KKGLKLA--EFIKID--KELGSGDAV-CASIAPEQQILAVGTRRG---VVELYDLAESASLIRT  294 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~-d~~~~~~--~~~~~~--~~~~~~~~v-~v~~sp~~~~la~g~~dg---~v~vw~~~~~~~~~~~  294 (696)
                      ..++|||+.++..++ ++...+|  +...++  .+..+.... ..+|||||+.||..+.++   .|.+||+.+ ++.. .
T Consensus       297 ~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~~~-~  374 (433)
T PRK04922        297 PTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GSVR-T  374 (433)
T ss_pred             eEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-CCeE-E
Confidence            357888887776664 3343444  332322  122222223 389999999999876543   689999876 4432 2


Q ss_pred             EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC---CcEEEEEccCCeeEEEeecccccceecccccC
Q 005459          295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGCRLMSTIRQISLSSISSPIVKP  360 (696)
Q Consensus       295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D---g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp  360 (696)
                      +..         .......+|+|||+.|+..+.+   +.+.++++.++ ....+..+ ...+..++|+|
T Consensus       375 Lt~---------~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~-~g~~~~p~wsp  432 (433)
T PRK04922        375 LTP---------GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRLVSA-DGEVREPAWSP  432 (433)
T ss_pred             CCC---------CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEcccC-CCCCCCCccCC
Confidence            322         2234567999999988877664   34777787654 34444433 33456666665

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.02  E-value=2.6e-09  Score=102.73  Aligned_cols=209  Identities=14%  Similarity=0.208  Sum_probs=136.1

Q ss_pred             HhhcccccEEEEcCCCc-----EEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe
Q 005459           64 VQREGENLQAVWSPDTK-----LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI  138 (696)
Q Consensus        64 l~~~G~~~~v~wsPDg~-----~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~  138 (696)
                      +++.-+.+.+.|.||..     .||  |++.+||+|.+...........       +  +    ...+ -....+++++|
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLA--Ts~D~LRlWri~~ee~~~~~~~-------~--L----~~~k-ns~~~aPlTSF  156 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLA--TSSDFLRLWRIGDEESRVELQS-------V--L----NNNK-NSEFCAPLTSF  156 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhh--cccCeEEEEeccCcCCceehhh-------h--h----ccCc-ccccCCccccc
Confidence            45566788999999985     343  4455899999986543221100       0  0    0000 00112244454


Q ss_pred             ee---CCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEE
Q 005459          139 VS---DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE  215 (696)
Q Consensus       139 ~~---~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~  215 (696)
                      ..   +.++|.+.+-|-+-.+  |+-+.....                               ..++.+..|+..|.+++
T Consensus       157 DWne~dp~~igtSSiDTTCTi--Wdie~~~~~-------------------------------~vkTQLIAHDKEV~DIa  203 (364)
T KOG0290|consen  157 DWNEVDPNLIGTSSIDTTCTI--WDIETGVSG-------------------------------TVKTQLIAHDKEVYDIA  203 (364)
T ss_pred             ccccCCcceeEeecccCeEEE--EEEeecccc-------------------------------ceeeEEEecCcceeEEE
Confidence            32   4466666666666555  554443111                               12234566788888877


Q ss_pred             EccCcceEEEEEeCCc-EEEEeeccCCceeeeeeecce--e----cC-CCCeEEEEEcC-CCcEEEEEecC-CeEEEEEc
Q 005459          216 LCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDK--E----LG-SGDAVCASIAP-EQQILAVGTRR-GVVELYDL  285 (696)
Q Consensus       216 ~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~~~~~~~~~--~----~~-~~~~v~v~~sp-~~~~la~g~~d-g~v~vw~~  285 (696)
                      |          ..+|+ ++++.+.||.++.+|++..+-  +    .. +..-.++++|+ |-+++|+-..| ..|.+-|+
T Consensus       204 f----------~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi  273 (364)
T KOG0290|consen  204 F----------LKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI  273 (364)
T ss_pred             e----------ccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence            4          44443 566667788889888765321  1    11 33445588988 56788875554 68999999


Q ss_pred             cCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCC
Q 005459          286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC  339 (696)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~  339 (696)
                      +.....+.++++        |++.|+.++|.| ..+.|++++.|..+.+||+...
T Consensus       274 R~P~tpva~L~~--------H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  274 RVPCTPVARLRN--------HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             cCCCcceehhhc--------CcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence            988888889998        999999999999 5679999999999999998653

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.02  E-value=9.5e-10  Score=111.96  Aligned_cols=215  Identities=15%  Similarity=0.165  Sum_probs=139.3

Q ss_pred             HhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEee-eCC
Q 005459           64 VQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV-SDN  142 (696)
Q Consensus        64 l~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~-~~~  142 (696)
                      +.++|++ .+.++.+|+.|+.+...|+|--+|..+......+               ...+         .|..+. ..+
T Consensus       127 l~eFGPY-~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei---------------~v~E---------tv~Dv~~LHn  181 (545)
T KOG1272|consen  127 LPEFGPY-HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI---------------NVME---------TVRDVTFLHN  181 (545)
T ss_pred             ccccCCe-eeeecCCccEEEecCCccceeeeecccceeeeee---------------ehhh---------hhhhhhhhcc
Confidence            4467875 7899999999999999999999988755421111               0000         011110 012


Q ss_pred             CeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcce
Q 005459          143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL  222 (696)
Q Consensus       143 ~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  222 (696)
                      +.+++......+++++=+|...                                      ++......+..++       
T Consensus       182 eq~~AVAQK~y~yvYD~~GtEl--------------------------------------HClk~~~~v~rLe-------  216 (545)
T KOG1272|consen  182 EQFFAVAQKKYVYVYDNNGTEL--------------------------------------HCLKRHIRVARLE-------  216 (545)
T ss_pred             hHHHHhhhhceEEEecCCCcEE--------------------------------------eehhhcCchhhhc-------
Confidence            3333333444555554332211                                      1112222344455       


Q ss_pred             EEEEEeCCcEEEEeeccCCceeeeeeecceec---CCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeec
Q 005459          223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL---GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY  298 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~  298 (696)
                         |.|---++++++..+-++--|+..++...   .-.+.+. +.-||-...+-+|..+|+|.+|.-.. .+++..+-. 
T Consensus       217 ---FLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s-kePLvKiLc-  291 (545)
T KOG1272|consen  217 ---FLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS-KEPLVKILC-  291 (545)
T ss_pred             ---ccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC-cchHHHHHh-
Confidence               45555566666666666666776665431   1123444 88899999999999999999999887 666666666 


Q ss_pred             cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459          299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                             |.++|.+|++.|+|+++|+.+.|+.++|||+..-..+.++...  ...+.+++|..+
T Consensus       292 -------H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp--~~a~~ls~Sqkg  346 (545)
T KOG1272|consen  292 -------HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP--HPASNLSLSQKG  346 (545)
T ss_pred             -------cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC--CCcccccccccc
Confidence                   9999999999999999999999999999999887766665541  224445555443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.02  E-value=7e-08  Score=93.74  Aligned_cols=73  Identities=23%  Similarity=0.327  Sum_probs=53.6

Q ss_pred             EEEEeCCcEEEEEccCeEEEeecCCcee-eEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecC
Q 005459           25 IYFKVNNGLLLIASPCHIELWSSSQHKV-RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE  100 (696)
Q Consensus        25 v~fs~dg~lla~~~~~~v~iW~~~~~~~-~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~  100 (696)
                      ++.+.||++||++.|..|.|=..+..-. .+++..-..   +.+-.-..++||||++.||.+.+.|+|++||+-...
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpk---D~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~   76 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPK---DPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE   76 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCC---CCCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence            4578999999999999999977752211 223332111   223445689999999999999999999999997543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=98.98  E-value=8.6e-09  Score=106.87  Aligned_cols=140  Identities=17%  Similarity=0.270  Sum_probs=104.0

Q ss_pred             CCeEEEEEcC-CCcEEEEEecCCeEEEEEccCCC-------------ce--eeEEeecc--CCCCC--CCCCCeEEEEEC
Q 005459          257 GDAVCASIAP-EQQILAVGTRRGVVELYDLAESA-------------SL--IRTVSLYD--WGYSM--DDTGPVSCIAWT  316 (696)
Q Consensus       257 ~~~v~v~~sp-~~~~la~g~~dg~v~vw~~~~~~-------------~~--~~~~~~~~--~~~~~--~h~g~V~~l~~s  316 (696)
                      ...+|+.|-| +..++.++-.+|.+.+||.....             ..  +.+.+.+.  -|...  --++.|+..+||
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            4566788888 45677778899999999764311             00  11111100  01111  135689999999


Q ss_pred             CCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCc
Q 005459          317 PDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSS  393 (696)
Q Consensus       317 pdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~  393 (696)
                      |||++||+-+.||.+||+|..+.+++...+-. -....++.||||+    +++++|.   -+-+|.....+++.-..+|+
T Consensus       300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY-FGGLLCvcWSPDG----KyIvtGGEDDLVtVwSf~erRVVARGqGHk  374 (636)
T KOG2394|consen  300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSY-FGGLLCVCWSPDG----KYIVTGGEDDLVTVWSFEERRVVARGQGHK  374 (636)
T ss_pred             CCCceEEEEecCceEEEeeccHHHHHHHHHhh-ccceEEEEEcCCc----cEEEecCCcceEEEEEeccceEEEeccccc
Confidence            99999999999999999999888877666553 3458899999999    9999998   77789999999999999999


Q ss_pred             ceEEEEec
Q 005459          394 ERVLIFSF  401 (696)
Q Consensus       394 ~~v~~~~~  401 (696)
                      .+|.++.|
T Consensus       375 SWVs~VaF  382 (636)
T KOG2394|consen  375 SWVSVVAF  382 (636)
T ss_pred             cceeeEee
Confidence            99944444

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.98  E-value=8.3e-08  Score=100.42  Aligned_cols=152  Identities=20%  Similarity=0.225  Sum_probs=107.3

Q ss_pred             CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCC-----CeEEEEECCCCCeEEEEEcCCcE
Q 005459          258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG-----PVSCIAWTPDNSAFAVGWKSRGL  331 (696)
Q Consensus       258 ~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g-----~V~~l~~spdg~~lasg~~Dg~v  331 (696)
                      ..+. |.+|+-..+||+|+.||.|..||.++ .+...++....-  ...|.+     .|++++|+.||-.+++|..+|.+
T Consensus       176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~-ksrv~~l~~~~~--v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v  252 (703)
T KOG2321|consen  176 GELNVVSINEEHGLLACGTEDGVVEFWDPRD-KSRVGTLDAASS--VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSV  252 (703)
T ss_pred             ccceeeeecCccceEEecccCceEEEecchh-hhhheeeecccc--cCCCccccccCcceEEEecCCceeEEeeccCCcE
Confidence            4555 99999999999999999999999987 555554443111  011444     49999999999999999999999


Q ss_pred             EEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEecCCcceE--EEEec-ceeee
Q 005459          332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCL  406 (696)
Q Consensus       332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~  406 (696)
                      .++|+...+.+..-.+...-.+..+.|-+.+  ....++|..  .+++|+..+++.+....... .+  +++-+ +..++
T Consensus       253 ~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~--~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f  329 (703)
T KOG2321|consen  253 LIYDLRASKPLLVKDHGYELPIKKLDWQDTD--QQNKVVSMDKRILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFF  329 (703)
T ss_pred             EEEEcccCCceeecccCCccceeeecccccC--CCceEEecchHHhhhcccccCCceeeccccC-CcCceeeecCCceEE
Confidence            9999988776654444335567777776653  124455544  78899999998887765432 24  44444 55566


Q ss_pred             eccCCCCce
Q 005459          407 NRGVSGMTY  415 (696)
Q Consensus       407 s~~~d~~~~  415 (696)
                      ++..+..+.
T Consensus       330 ~Ane~~~m~  338 (703)
T KOG2321|consen  330 TANESSKMH  338 (703)
T ss_pred             EecCCCcce
Confidence            666555443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.96  E-value=5e-08  Score=106.57  Aligned_cols=206  Identities=14%  Similarity=0.118  Sum_probs=123.3

Q ss_pred             ceEEEEEeCCcEEEEeec---cCCceeeeeeecce--ecCCCCeE-EEEEcCCCcEEEEE-ecCC--eEEEEEccCCCce
Q 005459          221 RLLFVLYSNGQLMSCSVS---KKGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAVG-TRRG--VVELYDLAESASL  291 (696)
Q Consensus       221 ~~~~~~s~dG~~~~~~~~---d~~~~~~~~~~~~~--~~~~~~~v-~v~~sp~~~~la~g-~~dg--~v~vw~~~~~~~~  291 (696)
                      .....++|||+.++..+.   +..+.+++...++.  +....... ..+|||||+.||.. +.+|  .|.+||+++ +..
T Consensus       201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~~  279 (429)
T PRK03629        201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQI  279 (429)
T ss_pred             eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CCE
Confidence            344668899987776542   23456677655432  22222223 38999999988865 4455  488888876 443


Q ss_pred             eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC-CcEEEE--EccCCeeEEEeecccccceecccccCCCCCCccc
Q 005459          292 IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVW--SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP  368 (696)
Q Consensus       292 ~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D-g~v~vW--~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~  368 (696)
                       ..+..        +...+...+|||||+.|+..+.+ +...+|  ++.++.. ..+... ......+.|+|++    +.
T Consensus       280 -~~lt~--------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~-~~~~~~~~~SpDG----~~  344 (429)
T PRK03629        280 -RQVTD--------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWE-GSQNQDADVSSDG----KF  344 (429)
T ss_pred             -EEccC--------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecC-CCCccCEEECCCC----CE
Confidence             33333        34567889999999999877764 445565  5555543 333333 2235678899998    55


Q ss_pred             eecce------eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeee--cCCeEEEEecCCCCccee
Q 005459          369 LMSGT------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIY--GEDRLLVVQSEDTDELKI  439 (696)
Q Consensus       369 l~sg~------~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~--~~~~~~~~~~~~~~~~~w  439 (696)
                      ++...      .+..|++++++...........-..+++ ++.++..+.++....+.+..  |..               
T Consensus       345 Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~---------------  409 (429)
T PRK03629        345 MVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF---------------  409 (429)
T ss_pred             EEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC---------------
Confidence            54322      4677888877655443332222245666 77777777666533322222  222               


Q ss_pred             EEeecCeeeecCCCceEEEEEcC
Q 005459          440 LHLNLPVSYISQNWPVQHVAASK  462 (696)
Q Consensus       440 ~~~~~~~~~~~~~~~I~~va~s~  462 (696)
                           +..+.+|...++..+|||
T Consensus       410 -----~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        410 -----KARLPATDGQVKFPAWSP  427 (429)
T ss_pred             -----eEECccCCCCcCCcccCC
Confidence                 334456677788888887

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.96  E-value=6.5e-07  Score=95.14  Aligned_cols=293  Identities=13%  Similarity=0.080  Sum_probs=155.1

Q ss_pred             eEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEe-cCCeEEEEEccCCCceeeEEee
Q 005459          222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSL  297 (696)
Q Consensus       222 ~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~~~~~~~  297 (696)
                      ..+.+++||+.+++.+.|+.+.++|..+.+..   ..-..+..+++|+||+++++++ .++++.++|..+ .+.++.+..
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~  118 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET-LEPVKTIPT  118 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE-
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEecccc-ccceeeccc
Confidence            34568999998888888999999998776543   2224556699999999999876 689999999988 788887765


Q ss_pred             ccCCCCCCCCCCeEEEEECCCCCeEEEEEcC-CcEEEEEccCCee--EEEeecccccceecccccCCCCCCccceecce-
Q 005459          298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-  373 (696)
Q Consensus       298 ~~~~~~~~h~g~V~~l~~spdg~~lasg~~D-g~v~vW~~~~~~~--~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-  373 (696)
                      ...+... ....+..+-.+|+...++..-.| +.|.+-|......  ...+.-  ........|+|++    ++++.+. 
T Consensus       119 ~~~~~~~-~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~--g~~~~D~~~dpdg----ry~~va~~  191 (369)
T PF02239_consen  119 GGMPVDG-PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV--GRFPHDGGFDPDG----RYFLVAAN  191 (369)
T ss_dssp             -EE-TTT-S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TTS----SEEEEEEG
T ss_pred             ccccccc-cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc--cccccccccCccc----ceeeeccc
Confidence            3322211 34568889899999977777665 6666667654332  223321  1223445678887    7665543 


Q ss_pred             ---eeEEEcCCCceEEEEec----CCcceEEEE-ecceeeeeccCCCCceeeeeeecCCeEEEEecCCC----CcceeEE
Q 005459          374 ---SMMQWDEYGYRLYAIEE----GSSERVLIF-SFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT----DELKILH  441 (696)
Q Consensus       374 ---~~~~W~~~~~~l~~~~~----~~~~~v~~~-~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~----~~~~w~~  441 (696)
                         .+.+++.+++++.....    .|..++..+ +++.          -.+|..........-.-+.+.    +...|+.
T Consensus       192 ~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~----------g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv  261 (369)
T PF02239_consen  192 GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGF----------GPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV  261 (369)
T ss_dssp             GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTT----------EEEEEEEBSSSSEEEEEE--TTT-STTTBTSE
T ss_pred             ccceeEEEeeccceEEEEeeccccccccccccccCCCc----------ceEEeeccccceecccccCCccccchhhcCeE
Confidence               77788988887766542    123333222 2210          011222211111111111111    1123433


Q ss_pred             eecCeeeecCCCceEEEEEcCCCCEEEEE----eCCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEe
Q 005459          442 LNLPVSYISQNWPVQHVAASKDGMFLAVA----GLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNY  514 (696)
Q Consensus       442 ~~~~~~~~~~~~~I~~va~s~dG~~la~a----g~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~  514 (696)
                      +   .+......+ ..+..+||++++.+.    ...+.+ ++|.++.+-..  .........+..+.|.  ++.+-++.+
T Consensus       262 v---~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~--~i~~~~~~~~~h~ef~~dG~~v~vS~~  335 (369)
T PF02239_consen  262 V---KTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK--TITPGPGKRVVHMEFNPDGKEVWVSVW  335 (369)
T ss_dssp             E---EEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE---HHHHHT--EEEEEE-TTSSEEEEEEE
T ss_pred             E---EEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE--EEeccCCCcEeccEECCCCCEEEEEEe
Confidence            2   233334445 778889999999998    444778 99998864211  1111111125567775  566766655


Q ss_pred             ecCCCeEEEEEeeCCCCCccceeEEeecCC
Q 005459          515 IDSSNTYELLFYPRYHLDQSSLLCRKSLLA  544 (696)
Q Consensus       515 ~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~  544 (696)
                      ...   .+|.+|+...|.   ...+.++..
T Consensus       336 ~~~---~~i~v~D~~Tl~---~~~~i~~~t  359 (369)
T PF02239_consen  336 DGN---GAIVVYDAKTLK---EKKRIPVPT  359 (369)
T ss_dssp             --T---TEEEEEETTTTE---EEEEEE--S
T ss_pred             cCC---CEEEEEECCCcE---EEEEEEeeC
Confidence            322   289999987443   344444444

...

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.92  E-value=1.1e-07  Score=104.25  Aligned_cols=204  Identities=15%  Similarity=0.147  Sum_probs=119.9

Q ss_pred             ceeeeeee--cceecCCCCeEE-EEEcCCCcEEEEEecC---CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEE
Q 005459          242 LKLAEFIK--IDKELGSGDAVC-ASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW  315 (696)
Q Consensus       242 ~~~~~~~~--~~~~~~~~~~v~-v~~sp~~~~la~g~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~  315 (696)
                      +.+||...  .+.+..+...+. .+|+|||+.||..+.+   ..|.+||+++ ++. ..+..        +.+...+.+|
T Consensus       186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~-~~l~~--------~~g~~~~~~~  255 (433)
T PRK04922        186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQR-ELVAS--------FRGINGAPSF  255 (433)
T ss_pred             EEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CCE-EEecc--------CCCCccCceE
Confidence            44555432  222334444555 8999999999988743   4699999976 433 23333        4455668899


Q ss_pred             CCCCCeEE-EEEcCC--cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce------eeEEEcCCCceEE
Q 005459          316 TPDNSAFA-VGWKSR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLY  386 (696)
Q Consensus       316 spdg~~la-sg~~Dg--~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~  386 (696)
                      ||||+.|+ +.+.+|  .|.+||+.++.. ..+..+ ......+.|+|++    +.++..+      .+..++..+++..
T Consensus       256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~-~~~~~~~~~spDG----~~l~f~sd~~g~~~iy~~dl~~g~~~  329 (433)
T PRK04922        256 SPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNH-FGIDTEPTWAPDG----KSIYFTSDRGGRPQIYRVAASGGSAE  329 (433)
T ss_pred             CCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccC-CCCccceEECCCC----CEEEEEECCCCCceEEEEECCCCCeE
Confidence            99999776 455555  499999988764 344443 3345678999998    5554332      3556666665543


Q ss_pred             EEe-cCCcceEEEEec-ceeeeeccCC-C--CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEc
Q 005459          387 AIE-EGSSERVLIFSF-GKCCLNRGVS-G--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAAS  461 (696)
Q Consensus       387 ~~~-~~~~~~v~~~~~-~~~~~s~~~d-~--~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s  461 (696)
                      ... .++...-..+++ ++.++..+.+ +  .+.+|++..+..+                     .+ .+.......+|+
T Consensus       330 ~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~---------------------~L-t~~~~~~~p~~s  387 (433)
T PRK04922        330 RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR---------------------TL-TPGSLDESPSFA  387 (433)
T ss_pred             EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE---------------------EC-CCCCCCCCceEC
Confidence            322 222222256666 6666543322 2  3555555433321                     11 111123456899


Q ss_pred             CCCCEEEEEeCC---ccE-EEEccCC
Q 005459          462 KDGMFLAVAGLH---GLI-LYDIRQK  483 (696)
Q Consensus       462 ~dG~~la~ag~d---G~i-~w~~~sg  483 (696)
                      |||++++..+.+   +.+ +++...+
T Consensus       388 pdG~~i~~~s~~~g~~~L~~~~~~g~  413 (433)
T PRK04922        388 PNGSMVLYATREGGRGVLAAVSTDGR  413 (433)
T ss_pred             CCCCEEEEEEecCCceEEEEEECCCC
Confidence            999998887764   234 6666543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.92  E-value=1.2e-07  Score=103.58  Aligned_cols=172  Identities=15%  Similarity=0.174  Sum_probs=103.8

Q ss_pred             EEEEeCCcEEEEeecc---CCceeeeeeeccee--cCCCCe-EEEEEcCCCcEEEE-EecCCeEEEEEccCCCceeeEEe
Q 005459          224 FVLYSNGQLMSCSVSK---KGLKLAEFIKIDKE--LGSGDA-VCASIAPEQQILAV-GTRRGVVELYDLAESASLIRTVS  296 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d---~~~~~~~~~~~~~~--~~~~~~-v~v~~sp~~~~la~-g~~dg~v~vw~~~~~~~~~~~~~  296 (696)
                      ..++|||+.++..+.+   ..+.+||...++..  ...... ...+|||||+.||. .+.+|...+|.++..+...+.+.
T Consensus       201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt  280 (427)
T PRK02889        201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT  280 (427)
T ss_pred             ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC
Confidence            4578999887776643   23667787655432  222222 34899999998875 57788888887764334444444


Q ss_pred             eccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEc--cCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459          297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSV--SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT  373 (696)
Q Consensus       297 ~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~--~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~  373 (696)
                      .        +.+.+....|||||+.|+..+. ++...+|.+  .++.. ..+... ......+.|+|++    +.++...
T Consensus       281 ~--------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~-g~~~~~~~~SpDG----~~Ia~~s  346 (427)
T PRK02889        281 Q--------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFT-GSYNTSPRISPDG----KLLAYIS  346 (427)
T ss_pred             C--------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecC-CCCcCceEECCCC----CEEEEEE
Confidence            4        5556677899999998886654 466777765  44432 222222 1223467899998    6554322


Q ss_pred             ------eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeecc
Q 005459          374 ------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRG  409 (696)
Q Consensus       374 ------~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~  409 (696)
                            .+.+|+..+++......+....-..+++ ++.++..+
T Consensus       347 ~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~  389 (427)
T PRK02889        347 RVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYAT  389 (427)
T ss_pred             ccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEE
Confidence                  5778888776654443322222245555 55554443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.91  E-value=8.7e-07  Score=92.15  Aligned_cols=76  Identities=11%  Similarity=0.130  Sum_probs=61.5

Q ss_pred             EEEcCCCcEEEEEe----------cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEE-cCC
Q 005459          262 ASIAPEQQILAVGT----------RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGW-KSR  329 (696)
Q Consensus       262 v~~sp~~~~la~g~----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~-~Dg  329 (696)
                      ++++|+++.+.+..          ..+.|.++|..+ .+.+..+..         ...+..|++||||+ .|.+.. .++
T Consensus       253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v---------G~~~~~iavS~Dgkp~lyvtn~~s~  322 (352)
T TIGR02658       253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL---------GHEIDSINVSQDAKPLLYALSTGDK  322 (352)
T ss_pred             EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC---------CCceeeEEECCCCCeEEEEeCCCCC
Confidence            99999999888853          225799999887 777777765         34789999999999 888766 578


Q ss_pred             cEEEEEccCCeeEEEeec
Q 005459          330 GLTVWSVSGCRLMSTIRQ  347 (696)
Q Consensus       330 ~v~vW~~~~~~~~~~l~~  347 (696)
                      .|.+.|+.+++.+.++..
T Consensus       323 ~VsViD~~t~k~i~~i~~  340 (352)
T TIGR02658       323 TLYIFDAETGKELSSVNQ  340 (352)
T ss_pred             cEEEEECcCCeEEeeecc
Confidence            899999999999888744

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.89  E-value=3.3e-07  Score=100.58  Aligned_cols=217  Identities=11%  Similarity=0.105  Sum_probs=122.1

Q ss_pred             CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc---CCcEEEEEccCCeeEEEeeccccccee
Q 005459          278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK---SRGLTVWSVSGCRLMSTIRQISLSSIS  354 (696)
Q Consensus       278 g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~---Dg~v~vW~~~~~~~~~~l~~~~~~~v~  354 (696)
                      ..|.++|.+  +...+.+..        |.+.+.+.+|||||+.|+..+.   +..|.+||+.++... .+..+ ...+.
T Consensus       182 ~~l~~~d~d--g~~~~~lt~--------~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~-~g~~~  249 (435)
T PRK05137        182 KRLAIMDQD--GANVRYLTD--------GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNF-PGMTF  249 (435)
T ss_pred             eEEEEECCC--CCCcEEEec--------CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecC-CCccc
Confidence            367777765  455566666        7889999999999999988764   357999999877542 33332 23355


Q ss_pred             cccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCC--ceeeeeeecCCeEEEEecC
Q 005459          355 SPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGM--TYARQVIYGEDRLLVVQSE  432 (696)
Q Consensus       355 ~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~--~~~w~~~~~~~~~~~~~~~  432 (696)
                      +++|+|++    +.++                ...                   +.++.  +.++++..+..        
T Consensus       250 ~~~~SPDG----~~la----------------~~~-------------------~~~g~~~Iy~~d~~~~~~--------  282 (435)
T PRK05137        250 APRFSPDG----RKVV----------------MSL-------------------SQGGNTDIYTMDLRSGTT--------  282 (435)
T ss_pred             CcEECCCC----CEEE----------------EEE-------------------ecCCCceEEEEECCCCce--------
Confidence            66677766    3322                111                   11111  22222222211        


Q ss_pred             CCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC-Cc--cE-EEEccCCceEecCCccceeeeEEEeEeee--C
Q 005459          433 DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL-HG--LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--G  506 (696)
Q Consensus       433 ~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~-dG--~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~  506 (696)
                                   ..+..+.......+|||||++|+.++. +|  .+ ++|+.+++.+.+...    ........|.  +
T Consensus       283 -------------~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG  345 (435)
T PRK05137        283 -------------TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRG  345 (435)
T ss_pred             -------------EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC----CCcccCeEECCCC
Confidence                         112223334566899999999998874 44  35 778777655443211    1113346786  4


Q ss_pred             cEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEEEEEcCc-e---EEEEEEEEec
Q 005459          507 KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPF-D---VHIFHVKLFG  574 (696)
Q Consensus       507 ~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~-~---~~l~~~~~~~  574 (696)
                      +.|+...  ...+.+.|.+|+.+.-.. ..+... .......++++++.++..+.+. .   ..||.+.+.+
T Consensus       346 ~~ia~~~--~~~~~~~i~~~d~~~~~~-~~lt~~-~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g  413 (435)
T PRK05137        346 DLIAFTK--QGGGQFSIGVMKPDGSGE-RILTSG-FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG  413 (435)
T ss_pred             CEEEEEE--cCCCceEEEEEECCCCce-EeccCC-CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence            4565542  223446788887641111 111111 1112356788898888755432 2   4788887654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.85  E-value=2.3e-06  Score=84.04  Aligned_cols=229  Identities=13%  Similarity=0.140  Sum_probs=138.8

Q ss_pred             EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCC--eEEEEECCCCCeEEEEEcC------CcE
Q 005459          260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP--VSCIAWTPDNSAFAVGWKS------RGL  331 (696)
Q Consensus       260 v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~--V~~l~~spdg~~lasg~~D------g~v  331 (696)
                      ..++||.|..-+|+|..+| .|+|+.+...+ ......        +.+.  +..|-|-- ..+..+|+.+      +.|
T Consensus         9 lsvs~NQD~ScFava~~~G-friyn~~P~ke-~~~r~~--------~~~G~~~veMLfR~-N~laLVGGg~~pky~pNkv   77 (346)
T KOG2111|consen    9 LSVSFNQDHSCFAVATDTG-FRIYNCDPFKE-SASRQF--------IDGGFKIVEMLFRS-NYLALVGGGSRPKYPPNKV   77 (346)
T ss_pred             eEEEEccCCceEEEEecCc-eEEEecCchhh-hhhhcc--------ccCchhhhhHhhhh-ceEEEecCCCCCCCCCceE
Confidence            4499999999999999887 59999876221 111111        2222  22222221 2233345443      479


Q ss_pred             EEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCC-CceEEEEec--CCcceEEEEec--ceeee
Q 005459          332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEY-GYRLYAIEE--GSSERVLIFSF--GKCCL  406 (696)
Q Consensus       332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~-~~~l~~~~~--~~~~~v~~~~~--~~~~~  406 (696)
                      .|||=...+++.++.-.  ..|.++.++++.    -.++.-.++.+|... .-+++....  .....+.++.+  .+.++
T Consensus        78 iIWDD~k~~~i~el~f~--~~I~~V~l~r~r----iVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L  151 (346)
T KOG2111|consen   78 IIWDDLKERCIIELSFN--SEIKAVKLRRDR----IVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL  151 (346)
T ss_pred             EEEecccCcEEEEEEec--cceeeEEEcCCe----EEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence            99997777777777653  568888888874    222322377778664 334443332  11233555554  33332


Q ss_pred             --eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE--EEEccC
Q 005459          407 --NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDIRQ  482 (696)
Q Consensus       407 --s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i--~w~~~s  482 (696)
                        -|-..|.+++-++.....+                  .|....+|..+|.+++++.+|..||+||..|++  +||..+
T Consensus       152 afPg~k~GqvQi~dL~~~~~~------------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~  213 (346)
T KOG2111|consen  152 AFPGFKTGQVQIVDLASTKPN------------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED  213 (346)
T ss_pred             EcCCCccceEEEEEhhhcCcC------------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC
Confidence              2333456666555444331                  256778999999999999999999999999987  999999


Q ss_pred             CceEe-cCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeC
Q 005459          483 KKWRV-FGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR  528 (696)
Q Consensus       483 g~w~~-f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~  528 (696)
                      |.-.. |..-.+  .-.+-.|++.++....|+.   ++.+.|.+|..
T Consensus       214 g~~l~E~RRG~d--~A~iy~iaFSp~~s~Lavs---SdKgTlHiF~l  255 (346)
T KOG2111|consen  214 GTLLQELRRGVD--RADIYCIAFSPNSSWLAVS---SDKGTLHIFSL  255 (346)
T ss_pred             CcEeeeeecCCc--hheEEEEEeCCCccEEEEE---cCCCeEEEEEe
Confidence            86321 211111  1225578887776555544   44566777665

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=2.1e-06  Score=90.25  Aligned_cols=145  Identities=19%  Similarity=0.305  Sum_probs=99.5

Q ss_pred             CCeEEEEEcCCCc-EEEEEec--C---------CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE
Q 005459          257 GDAVCASIAPEQQ-ILAVGTR--R---------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV  324 (696)
Q Consensus       257 ~~~v~v~~sp~~~-~la~g~~--d---------g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las  324 (696)
                      .+.+.+.||+.|. +|+.++.  |         .++.+.+++. .+..  ...       ...|+|.++.|+|+|+-+++
T Consensus       218 adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-~s~~--V~L-------~k~GPVhdv~W~~s~~EF~V  287 (566)
T KOG2315|consen  218 ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-ESVS--VPL-------LKEGPVHDVTWSPSGREFAV  287 (566)
T ss_pred             cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC-ceEE--Eec-------CCCCCceEEEECCCCCEEEE
Confidence            3556688898776 3333433  2         2455555542 2222  222       14899999999999987776


Q ss_pred             --EEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce------eeEEEcCCCceEEEEecCCcceE
Q 005459          325 --GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGSSERV  396 (696)
Q Consensus       325 --g~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~~~~~~~~~v  396 (696)
                        |..=..+.++|+.+.. +..+..   ..=+.+.|+|.+    +.++-+.      .+-+||..+.+++.........+
T Consensus       288 vyGfMPAkvtifnlr~~~-v~df~e---gpRN~~~fnp~g----~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~  359 (566)
T KOG2315|consen  288 VYGFMPAKVTIFNLRGKP-VFDFPE---GPRNTAFFNPHG----NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTV  359 (566)
T ss_pred             EEecccceEEEEcCCCCE-eEeCCC---CCccceEECCCC----CEEEEeecCCCCCceEEEeccchhhccccccCCceE
Confidence              4556789999988764 444433   344678899998    6554333      78899999999999888877888


Q ss_pred             EEEec-ceeeeeccC------CCCceeeee
Q 005459          397 LIFSF-GKCCLNRGV------SGMTYARQV  419 (696)
Q Consensus       397 ~~~~~-~~~~~s~~~------d~~~~~w~~  419 (696)
                      ..+++ |..++|+..      |+.+++|+.
T Consensus       360 ~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             EEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            99999 888877654      556677764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.82  E-value=1.8e-05  Score=84.06  Aligned_cols=107  Identities=12%  Similarity=0.174  Sum_probs=64.0

Q ss_pred             EEEEeCCcEEEEee-ccCCceeeeeeecc----e---e-----------cCCCCeEEEEEcCCCcEEEEEec-CCeEEEE
Q 005459          224 FVLYSNGQLMSCSV-SKKGLKLAEFIKID----K---E-----------LGSGDAVCASIAPEQQILAVGTR-RGVVELY  283 (696)
Q Consensus       224 ~~~s~dG~~~~~~~-~d~~~~~~~~~~~~----~---~-----------~~~~~~v~v~~sp~~~~la~g~~-dg~v~vw  283 (696)
                      +++++||+.++++. .++++.++++....    .   .           +....+-++.++|+++++.+... ...|.+|
T Consensus        92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~  171 (345)
T PF10282_consen   92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY  171 (345)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence            44667777666654 35555554443210    0   0           11233445999999998877543 4589999


Q ss_pred             EccCCCc-eee--EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEcc
Q 005459          284 DLAESAS-LIR--TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVS  337 (696)
Q Consensus       284 ~~~~~~~-~~~--~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~~  337 (696)
                      +++.... +..  .+..       .....-+.++|+|||+++.+..+ +++|.++++.
T Consensus       172 ~~~~~~~~l~~~~~~~~-------~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  172 DIDDDTGKLTPVDSIKV-------PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             EE-TTS-TEEEEEEEEC-------STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEeCCCceEEEeecccc-------ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence            9987332 322  2222       13345789999999998866654 6789999987

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=8.2e-07  Score=97.48  Aligned_cols=124  Identities=14%  Similarity=0.188  Sum_probs=68.2

Q ss_pred             EEEEeCCcEEEEeec-cCCceee--eeeecce--ecCCCC-eEEEEEcCCCcEEEEEec-CCeEEE--EEccCCCceeeE
Q 005459          224 FVLYSNGQLMSCSVS-KKGLKLA--EFIKIDK--ELGSGD-AVCASIAPEQQILAVGTR-RGVVEL--YDLAESASLIRT  294 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~-d~~~~~~--~~~~~~~--~~~~~~-~v~v~~sp~~~~la~g~~-dg~v~v--w~~~~~~~~~~~  294 (696)
                      ..++|||+.++..+. ++...+|  +...++.  +..... ....+|+|||+.|+..+. ++..++  +|+++ +. ...
T Consensus       311 p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~  388 (448)
T PRK04792        311 PSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQV  388 (448)
T ss_pred             eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEE
Confidence            346788887766554 3334444  4333321  111111 123689999999988765 444445  55554 33 233


Q ss_pred             EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc---EEEEEccCCeeEEEeecccccceecccccC
Q 005459          295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG---LTVWSVSGCRLMSTIRQISLSSISSPIVKP  360 (696)
Q Consensus       295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~---v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp  360 (696)
                      +..        . ......+|+|||+.|+....+++   +.+++..+. ....+..+ ...+..++|+|
T Consensus       389 lt~--------~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~-~~~~l~~~-~g~~~~p~Wsp  446 (448)
T PRK04792        389 LTS--------T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR-FKARLPAG-QGEVKSPAWSP  446 (448)
T ss_pred             ccC--------C-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCC-CCCcCCCccCC
Confidence            332        1 11223479999998887665443   666777544 44455443 33456677766

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.80  E-value=4.8e-08  Score=101.51  Aligned_cols=118  Identities=18%  Similarity=0.261  Sum_probs=97.9

Q ss_pred             CcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee----cCCCCeEE-EEEcC--CCcEEEEEe
Q 005459          203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAP--EQQILAVGT  275 (696)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~-v~~sp--~~~~la~g~  275 (696)
                      .+.+|.++|.+++          ++.||.+++++++|..+.+||...-+.+    .||..-|. +.|-|  ..+++++|.
T Consensus        45 eL~GH~GCVN~Le----------Wn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA  114 (758)
T KOG1310|consen   45 ELTGHTGCVNCLE----------WNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA  114 (758)
T ss_pred             hhccccceeccee----------ecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc
Confidence            5668888998887          6789999999999999999998754443    67887665 89988  578999999


Q ss_pred             cCCeEEEEEccCC---------CceeeEEeeccCCCCCCCCCCeEEEEECCCC-CeEEEEEcCCcEEEEEccC
Q 005459          276 RRGVVELYDLAES---------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       276 ~dg~v~vw~~~~~---------~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg-~~lasg~~Dg~v~vW~~~~  338 (696)
                      .|..|+|||++..         ...++.+..        |+..|..|+-.|+| +.+-++++||+++-+|+..
T Consensus       115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~c--------ht~rVKria~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSC--------HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             CcceEEEEecccccccccccCccchhhhhhh--------hhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence            9999999999851         123344455        99999999999999 8999999999999999865

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.77  E-value=6.9e-07  Score=93.72  Aligned_cols=276  Identities=18%  Similarity=0.178  Sum_probs=171.0

Q ss_pred             CCCCeEE-EEEcCCCcE-EEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEE
Q 005459          255 GSGDAVC-ASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT  332 (696)
Q Consensus       255 ~~~~~v~-v~~sp~~~~-la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~  332 (696)
                      ++..+.. +.++|||++ +|+|.--=.|++||+.. ..+...-+.        ....|...-.|-|-..++---.|++|-
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan-LSLKFERhl--------Dae~V~feiLsDD~SK~v~L~~DR~Ie  119 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN-LSLKFERHL--------DAEVVDFEILSDDYSKSVFLQNDRTIE  119 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEccc-ceeeeeecc--------cccceeEEEeccchhhheEeecCceee
Confidence            4555555 999999996 57788888999999986 443332222        345577777777877777777888888


Q ss_pred             EEEccCCeeEEEeecccccceeccccc-CCCCCCcccee--cceeeEEEcCCCceEEEEecCCcceEEEEec---ceeee
Q 005459          333 VWSVSGCRLMSTIRQISLSSISSPIVK-PNQDCKYEPLM--SGTSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCL  406 (696)
Q Consensus       333 vW~~~~~~~~~~l~~~~~~~v~~~~~s-p~~~~~~~~l~--sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~  406 (696)
                      +-.-.|...-..++-.|.+    +.++ |.  |  +.+.  +|..+.-.+++.|+.+..+.-....+++++.   -..++
T Consensus       120 fHak~G~hy~~RIP~~GRD----m~y~~~s--c--Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla  191 (703)
T KOG2321|consen  120 FHAKYGRHYRTRIPKFGRD----MKYHKPS--C--DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLA  191 (703)
T ss_pred             ehhhcCeeeeeecCcCCcc----ccccCCC--c--cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEE
Confidence            8776665433333322111    1111 11  1  3333  3337777888888887776555556655544   45667


Q ss_pred             eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC-----ceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459          407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW-----PVQHVAASKDGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-----~I~~va~s~dG~~la~ag~dG~i-~w~~  480 (696)
                      .|+.++.+..||......--.              +.++.....|.+     .|.++.|+.||-.+|+|..+|.+ +||+
T Consensus       192 ~Gt~~g~VEfwDpR~ksrv~~--------------l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL  257 (703)
T KOG2321|consen  192 CGTEDGVVEFWDPRDKSRVGT--------------LDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL  257 (703)
T ss_pred             ecccCceEEEecchhhhhhee--------------eecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence            777799999999765432111              111222122222     39999999999999999999999 9999


Q ss_pred             cCCceEecCCccceeeeEEEeEeee----CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCC-ccEEEEccCCE
Q 005459          481 RQKKWRVFGDITQEQKIQSKGLLWL----GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLA-KPIVMDVYEDY  555 (696)
Q Consensus       481 ~sg~w~~f~~~~~e~~~~v~~~~w~----~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~-~~l~~~~~~~~  555 (696)
                      .+.+=-+..  .|..++.+..+.|.    ++.++++      +...+|+|+..  +...+...++... .-+.+.++...
T Consensus       258 Ra~~pl~~k--dh~~e~pi~~l~~~~~~~q~~v~S~------Dk~~~kiWd~~--~Gk~~asiEpt~~lND~C~~p~sGm  327 (703)
T KOG2321|consen  258 RASKPLLVK--DHGYELPIKKLDWQDTDQQNKVVSM------DKRILKIWDEC--TGKPMASIEPTSDLNDFCFVPGSGM  327 (703)
T ss_pred             ccCCceeec--ccCCccceeeecccccCCCceEEec------chHHhhhcccc--cCCceeeccccCCcCceeeecCCce
Confidence            987632222  34555667789995    3455553      55789999885  2222233332222 11344456666


Q ss_pred             EEEEEcCceEEEEEEE
Q 005459          556 ILVTYRPFDVHIFHVK  571 (696)
Q Consensus       556 llv~~~d~~~~l~~~~  571 (696)
                      ++++-.+..+.-|.+.
T Consensus       328 ~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  328 FFTANESSKMHTYYIP  343 (703)
T ss_pred             EEEecCCCcceeEEcc
Confidence            6666666666666543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.75  E-value=4.4e-07  Score=89.64  Aligned_cols=257  Identities=10%  Similarity=0.057  Sum_probs=136.8

Q ss_pred             ccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcc-----cccCCCCCCCceeeeeeEEEeeeccccccceeEEEeee-C
Q 005459           68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS-----IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-D  141 (696)
Q Consensus        68 G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~-~  141 (696)
                      .-+.++.|..+|.+||+|..+|.+.+|.-....+.     ...+.|.++=..+.+++  +++++      ..+.-+.. .
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSle--ieEKi------nkIrw~~~~n   97 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLE--IEEKI------NKIRWLDDGN   97 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhh--hhhhh------hhceecCCCC
Confidence            44568999999999999999999999976543321     11222333322222221  12221      11222211 2


Q ss_pred             CCeEEEEecCCcEEEEecCCccccc--eee--ccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEc
Q 005459          142 NKHMLLGLSDGSLYSISWKGEFYGA--FEL--VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC  217 (696)
Q Consensus       142 ~~~llv~t~~g~i~~~~w~~~~~~~--~~~--~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  217 (696)
                      ...+++.+.|.+|..|.-.......  ..+  ...|.....++..-..+.....   + ...++..-..|.-.|.+    
T Consensus        98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~v---e-a~prRv~aNaHtyhiNS----  169 (433)
T KOG1354|consen   98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEV---E-ASPRRVYANAHTYHINS----  169 (433)
T ss_pred             ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccccee---e-eeeeeeccccceeEeee----
Confidence            3678888999999885332111110  000  0001111111100000000000   0 00111112223333333    


Q ss_pred             cCcceEEEEEeCCcEEEEeeccCCceeeeeeecce-e-----cC-----CCCeEE-EEEcCC-CcEEEEEecCCeEEEEE
Q 005459          218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-E-----LG-----SGDAVC-ASIAPE-QQILAVGTRRGVVELYD  284 (696)
Q Consensus       218 ~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~-~-----~~-----~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~  284 (696)
                            +.+.+|+..+++ ++|-.+++|++..... .     ..     -...+. ..|+|. .++++-.+.-|+||+-|
T Consensus       170 ------IS~NsD~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD  242 (433)
T KOG1354|consen  170 ------ISVNSDKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD  242 (433)
T ss_pred             ------eeecCccceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence                  457888888774 5677789998763321 1     11     123344 789995 67888889999999999


Q ss_pred             ccCCCce---eeEEeeccCCCC----CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc-cCCeeEEEeecc
Q 005459          285 LAESASL---IRTVSLYDWGYS----MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV-SGCRLMSTIRQI  348 (696)
Q Consensus       285 ~~~~~~~---~~~~~~~~~~~~----~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~-~~~~~~~~l~~~  348 (696)
                      ++...-+   .+.+....-|.+    .+-...|.++.||++|+++++-.. -+|++||+ ...+.+.+.+-|
T Consensus       243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh  313 (433)
T KOG1354|consen  243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH  313 (433)
T ss_pred             chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence            9852211   111221111111    122346889999999999998776 79999999 555556665544

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.75  E-value=7.4e-07  Score=97.46  Aligned_cols=183  Identities=18%  Similarity=0.139  Sum_probs=107.5

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecC---CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE-EEcC
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-GWKS  328 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las-g~~D  328 (696)
                      ..+...+. .+|+|||+.||.+..+   ..|++|++.+ +.. ..+..        +.+.+.+++|+|||+.|+. ...+
T Consensus       186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~-g~~-~~~~~--------~~~~~~~~~~spDg~~l~~~~~~~  255 (417)
T TIGR02800       186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT-GQR-EKVAS--------FPGMNGAPAFSPDGSKLAVSLSKD  255 (417)
T ss_pred             ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCC-CCE-EEeec--------CCCCccceEECCCCCEEEEEECCC
Confidence            34444454 8999999999988754   4899999986 433 23333        5566778999999998764 4444


Q ss_pred             C--cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce------eeEEEcCCCceEEEEecC-CcceEEEE
Q 005459          329 R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEG-SSERVLIF  399 (696)
Q Consensus       329 g--~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~~~~~-~~~~v~~~  399 (696)
                      +  .|.+|++.++.. ..+..+ ......+.|+|++    +.++..+      .+..++..+++....... ....-..+
T Consensus       256 ~~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~s~dg----~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~  329 (417)
T TIGR02800       256 GNPDIYVMDLDGKQL-TRLTNG-PGIDTEPSWSPDG----KSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSW  329 (417)
T ss_pred             CCccEEEEECCCCCE-EECCCC-CCCCCCEEECCCC----CEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEE
Confidence            4  588889887653 334333 2334567888987    5544222      466677766654333222 11111455


Q ss_pred             ec-ceeeeeccCCC---CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCc
Q 005459          400 SF-GKCCLNRGVSG---MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG  474 (696)
Q Consensus       400 ~~-~~~~~s~~~d~---~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG  474 (696)
                      ++ ++.++..+.+.   .+.++++..+..+               .  +..     .......+|+|||++|+.+..++
T Consensus       330 spdg~~i~~~~~~~~~~~i~~~d~~~~~~~---------------~--l~~-----~~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       330 SPDGDLIAFVHREGGGFNIAVMDLDGGGER---------------V--LTD-----TGLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CCCCCEEEEEEccCCceEEEEEeCCCCCeE---------------E--ccC-----CCCCCCceECCCCCEEEEEEeCC
Confidence            55 55555544443   2333333222111               0  111     11233458999999998887765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.75  E-value=8e-08  Score=98.76  Aligned_cols=293  Identities=13%  Similarity=0.119  Sum_probs=173.7

Q ss_pred             cCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee----cCCCCeEE-EEEcC--CCcEEEEEec
Q 005459          204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAP--EQQILAVGTR  276 (696)
Q Consensus       204 ~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~-v~~sp--~~~~la~g~~  276 (696)
                      +..|.+++..+.          |...|..+++++.|..+.+||-......    .||..-+. ..|-|  +.+.|++.+.
T Consensus       138 L~~H~GcVntV~----------FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~  207 (559)
T KOG1334|consen  138 LNKHKGCVNTVH----------FNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR  207 (559)
T ss_pred             ccCCCCccceee----------ecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccc
Confidence            345666776655          7789999999999999999997765443    57777776 66767  4678999999


Q ss_pred             CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEcCCcEEEEEccCCeeEEEe--eccccc--
Q 005459          277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRLMSTI--RQISLS--  351 (696)
Q Consensus       277 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~Dg~v~vW~~~~~~~~~~l--~~~~~~--  351 (696)
                      ||.|++=.+...+....+....+      |.|+|..++.-|+ -+-|.++++|+.+.-.|+........+  +.+...  
T Consensus       208 dgqvr~s~i~~t~~~e~t~rl~~------h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~  281 (559)
T KOG1334|consen  208 DGQVRVSEILETGYVENTKRLAP------HEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER  281 (559)
T ss_pred             cCceeeeeeccccceecceeccc------ccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence            99999988776443332332211      9999999999995 457899999999999998655432221  222122  


Q ss_pred             -ceecccccCCCCCCccceecce--eeEEEcCCCceEE------EEecC-C-----cceEEEEec---ceeeeeccCCCC
Q 005459          352 -SISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLY------AIEEG-S-----SERVLIFSF---GKCCLNRGVSGM  413 (696)
Q Consensus       352 -~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~------~~~~~-~-----~~~v~~~~~---~~~~~s~~~d~~  413 (696)
                       ...+++..|..  .++..+.|.  -.++++....+.-      ..+-. |     .-.|..+.+   +..++++-.|--
T Consensus       282 v~L~~Ia~~P~n--t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~  359 (559)
T KOG1334|consen  282 VGLYTIAVDPRN--TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED  359 (559)
T ss_pred             eeeeeEecCCCC--ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc
Confidence             34555666653  223333333  4455554332211      11100 1     112222222   222222222222


Q ss_pred             ceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC--ceEEEEE-cCCCCEEEEEeCCccE-EEEccCCceEecC
Q 005459          414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW--PVQHVAA-SKDGMFLAVAGLHGLI-LYDIRQKKWRVFG  489 (696)
Q Consensus       414 ~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~--~I~~va~-s~dG~~la~ag~dG~i-~w~~~sg~w~~f~  489 (696)
                      ++++.-..+.       |.+.....-..--+|..|++|..  .|..+-| -|...|+++|+.-|.| +|+-.+++.-.|.
T Consensus       360 IYLF~~~~~~-------G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M  432 (559)
T KOG1334|consen  360 IYLFNKSMGD-------GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM  432 (559)
T ss_pred             eEEecccccc-------CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh
Confidence            3222111110       00000000011113556999843  4777754 6889999999999999 9999998765553


Q ss_pred             Cccceeee-EEEeEeeeCcEEEEEEeecCCCeEEEEEeeC
Q 005459          490 DITQEQKI-QSKGLLWLGKIIVVCNYIDSSNTYELLFYPR  528 (696)
Q Consensus       490 ~~~~e~~~-~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~  528 (696)
                      .    .+- .|.++.=+++.-|.|+.   +-++.|+||..
T Consensus       433 e----gDr~VVNCLEpHP~~PvLAsS---Gid~DVKIWTP  465 (559)
T KOG1334|consen  433 E----GDRHVVNCLEPHPHLPVLASS---GIDHDVKIWTP  465 (559)
T ss_pred             h----cccceEeccCCCCCCchhhcc---CCccceeeecC
Confidence            2    222 45578888877666633   45588999976

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.74  E-value=1.4e-05  Score=86.86  Aligned_cols=461  Identities=17%  Similarity=0.171  Sum_probs=235.8

Q ss_pred             ccceeeeCCCCCCCCCceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhc-ccccEEEEcCCC-----
Q 005459            6 GWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDT-----   79 (696)
Q Consensus         6 g~p~~~~~~~~~~~~~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wsPDg-----   79 (696)
                      -||+.++..+.  ++.-..+..+|.| |+|-++.+.|.+=|.+ .-..+.       +++.| ..++.+.|+|-.     
T Consensus         4 ~s~~tlpG~l~--~sN~~A~Dw~~~G-LiAygshslV~VVDs~-s~q~iq-------sie~h~s~V~~VrWap~~~p~~l   72 (1062)
T KOG1912|consen    4 VSDHTLPGPLS--RSNRNAADWSPSG-LIAYGSHSLVSVVDSR-SLQLIQ-------SIELHQSAVTSVRWAPAPSPRDL   72 (1062)
T ss_pred             cccccCCCCCC--cccccccccCccc-eEEEecCceEEEEehh-hhhhhh-------ccccCccceeEEEeccCCCchhc
Confidence            36666654433  2344456677777 8899999999999986 222222       22222 456788887632     


Q ss_pred             -----c--EEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCC-CeEEEEecC
Q 005459           80 -----K--LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSD  151 (696)
Q Consensus        80 -----~--~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~-~~llv~t~~  151 (696)
                           .  +||++.-.|.|.+||.........+..+..+-+.+   .+..-               ..+. +-+++-...
T Consensus        73 lS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl---~W~~~---------------rd~Srd~LlaIh~s  134 (1062)
T KOG1912|consen   73 LSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDL---CWVPA---------------RDDSRDVLLAIHGS  134 (1062)
T ss_pred             cCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhhe---eeeec---------------cCcchheeEEecCC
Confidence                 2  46666677999999998665433222222221111   00000               0112 334444444


Q ss_pred             CcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcC-CCcccEEEEEEccCc-ceEEEEEeC
Q 005459          152 GSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF-PISSAIIWLELCLPM-RLLFVLYSN  229 (696)
Q Consensus       152 g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~~~~~s~d  229 (696)
                      ..+..  |+..++..+                                   +.. -......++.++|+. ..++..+..
T Consensus       135 s~lvL--wntdtG~k~-----------------------------------Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~  177 (1062)
T KOG1912|consen  135 STLVL--WNTDTGEKF-----------------------------------WKYDYSHEILSCFRVDPFDSRHFCVLGSK  177 (1062)
T ss_pred             cEEEE--EEccCCcee-----------------------------------eccccCCcceeeeeeCCCCcceEEEEccC
Confidence            55544  543333211                                   000 012233445666665 455556666


Q ss_pred             CcEEEEee-----ccCCceeeeeeec----cee-----cC--C----CCe----EE--EEEcCCCcEEEEEecCCeEEEE
Q 005459          230 GQLMSCSV-----SKKGLKLAEFIKI----DKE-----LG--S----GDA----VC--ASIAPEQQILAVGTRRGVVELY  283 (696)
Q Consensus       230 G~~~~~~~-----~d~~~~~~~~~~~----~~~-----~~--~----~~~----v~--v~~sp~~~~la~g~~dg~v~vw  283 (696)
                      |.++.+..     ++...+...+.+.    ...     .+  +    ..+    .|  .+|+|..+-+....-...+.|+
T Consensus       178 g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~  257 (1062)
T KOG1912|consen  178 GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVF  257 (1062)
T ss_pred             ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEE
Confidence            66555432     1222333332221    000     00  0    011    13  6889988877777788899999


Q ss_pred             EccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC--eEEEEEcCCcEEEEEccCC-------------------eeE
Q 005459          284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGC-------------------RLM  342 (696)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~--~lasg~~Dg~v~vW~~~~~-------------------~~~  342 (696)
                      |++- ...+.+...        ..+.+.-+.|-||++  .|+..-.||.+.+|--...                   .++
T Consensus       258 dle~-~~~l~vvpi--------er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~v  328 (1062)
T KOG1912|consen  258 DLEY-ECCLAVVPI--------ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVV  328 (1062)
T ss_pred             cchh-hceeEEEEe--------ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEE
Confidence            9876 566666766        678889999999887  7899999999999965331                   122


Q ss_pred             EEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCC-cceEEEEecce--------eeeeccCCCC
Q 005459          343 STIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGS-SERVLIFSFGK--------CCLNRGVSGM  413 (696)
Q Consensus       343 ~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~-~~~v~~~~~~~--------~~~s~~~d~~  413 (696)
                      +..+..   .....+..|..+.....+.+.....+|.+.++++-...... ..-+.-|+|..        .+.+-+.||.
T Consensus       329 r~m~~~---rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~  405 (1062)
T KOG1912|consen  329 RPMEEF---RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGS  405 (1062)
T ss_pred             eechhc---ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCC
Confidence            222221   01111112322111233445557788988876654333221 11224444411        1222333331


Q ss_pred             ceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee-----cCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEe
Q 005459          414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-----SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV  487 (696)
Q Consensus       414 ~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-----~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~  487 (696)
                      ..     .|.             ..-+.-..|+--+     +.|-|--.+      ..+|+|...|++ ++|+.++.-. 
T Consensus       406 h~-----sGs-------------~~~~~~p~p~~t~~~~~p~~n~~~~~~------pLvAvGT~sGTV~vvdvst~~v~-  460 (1062)
T KOG1912|consen  406 HS-----SGS-------------TCVRMRPMPELTKVENDPGGNTPAGTV------PLVAVGTNSGTVDVVDVSTNAVA-  460 (1062)
T ss_pred             CC-----CCc-------------eeeecccCcccceeecCCCCCccceee------eeEEeecCCceEEEEEecchhhh-
Confidence            10     000             0000001111000     111111111      268999999999 9999987521 


Q ss_pred             cCCccceeeeEEEeEeeeCcE-EEEEEeecCCC---eE--EEEEeeCC-CCCccceeEEeecCC--ccEEEEccCCEEEE
Q 005459          488 FGDITQEQKIQSKGLLWLGKI-IVVCNYIDSSN---TY--ELLFYPRY-HLDQSSLLCRKSLLA--KPIVMDVYEDYILV  558 (696)
Q Consensus       488 f~~~~~e~~~~v~~~~w~~~~-lv~~~~~~~~~---~~--~lr~y~~~-~l~~~~~~~~~~~~~--~~l~~~~~~~~llv  558 (696)
                        ....-+.-.|+|+-|.+.. ++..+|+...+   .+  ++.+-+.. .+...+...+++-.+  ..+-.+..+.||++
T Consensus       461 --~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai  538 (1062)
T KOG1912|consen  461 --ASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAI  538 (1062)
T ss_pred             --hhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEE
Confidence              1111223348899998765 55555543222   11  33333332 333333222222222  33556678999999


Q ss_pred             EEcCceEEEEEEE
Q 005459          559 TYRPFDVHIFHVK  571 (696)
Q Consensus       559 ~~~d~~~~l~~~~  571 (696)
                      ...+.-..+|++.
T Consensus       539 ~Fr~~plEiwd~k  551 (1062)
T KOG1912|consen  539 LFRREPLEIWDLK  551 (1062)
T ss_pred             EecccchHHHhhc
Confidence            8888888888874

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.73  E-value=9.1e-05  Score=78.60  Aligned_cols=289  Identities=14%  Similarity=0.113  Sum_probs=147.7

Q ss_pred             CeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec----CcEEEEEEEEecCcccccCCCCCCCcee
Q 005459           40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----SLYLHIFKVQITEKSIQIGGKQPSGLFF  115 (696)
Q Consensus        40 ~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~----dg~l~l~~l~~~~~~~~~~~~~~~~~~~  115 (696)
                      +.|+++..+.....+......    ..-+.-..++++||+++|.+...    +|.|..|++......+.           
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~----~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~-----------   77 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTV----AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLT-----------   77 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEE----EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEE-----------
T ss_pred             CcEEEEEEcCCCCCceEeeee----cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeE-----------
Confidence            578888773222223222211    11223356999999999999876    57899999875421111           


Q ss_pred             eeeeEEEeeeccccccceeEEEeeeCCCeEEEEec-CCcEEEEecCCccccceeeccCCCCCcccccccccCCCCccccc
Q 005459          116 IKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD  194 (696)
Q Consensus       116 ~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~-~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~  194 (696)
                            ........+....-.++.++++.++++.. +|.+..+..+..-.......       .+......++       
T Consensus        78 ------~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~-------~~~~~g~g~~-------  137 (345)
T PF10282_consen   78 ------LLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ-------TVRHEGSGPN-------  137 (345)
T ss_dssp             ------EEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEE-------EEESEEEESS-------
T ss_pred             ------EeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeee-------ecccCCCCCc-------
Confidence                  11111112222233356678888888875 67888877764311110000       0000000000       


Q ss_pred             CCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEee-ccCCceeeeeeecc---------eecCCCCeEEEEE
Q 005459          195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKID---------KELGSGDAVCASI  264 (696)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~-~d~~~~~~~~~~~~---------~~~~~~~~v~v~~  264 (696)
                              ..........+          +.++|||+.+++.. ....+.+++.....         ....-..+-.++|
T Consensus       138 --------~~rq~~~h~H~----------v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f  199 (345)
T PF10282_consen  138 --------PDRQEGPHPHQ----------VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF  199 (345)
T ss_dssp             --------TTTTSSTCEEE----------EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred             --------cccccccccee----------EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence                    00011222333          45788888766543 23345555543221         0122244556999


Q ss_pred             cCCCcEEEEEe-cCCeEEEEEccCC-Cce--eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEcc--
Q 005459          265 APEQQILAVGT-RRGVVELYDLAES-ASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVS--  337 (696)
Q Consensus       265 sp~~~~la~g~-~dg~v~vw~~~~~-~~~--~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~~--  337 (696)
                      +|+++++.+.+ .+++|.+|+++.. +..  +..+..  .+...........|++||||++|.++.+ +++|.++++.  
T Consensus       200 ~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~  277 (345)
T PF10282_consen  200 SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST--LPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA  277 (345)
T ss_dssp             -TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES--CETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred             cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee--ccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence            99999876655 5789999999831 322  222222  1111112236889999999999887764 5689999993  


Q ss_pred             CCee--EEEeecccccceecccccCCCCCCccceecce------eeEEEcCCCceEEEE
Q 005459          338 GCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAI  388 (696)
Q Consensus       338 ~~~~--~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~~  388 (696)
                      ++++  +..+.-.+ ..-..++++|++    +.++.+.      .+..++.+++.|...
T Consensus       278 ~g~l~~~~~~~~~G-~~Pr~~~~s~~g----~~l~Va~~~s~~v~vf~~d~~tG~l~~~  331 (345)
T PF10282_consen  278 TGTLTLVQTVPTGG-KFPRHFAFSPDG----RYLYVANQDSNTVSVFDIDPDTGKLTPV  331 (345)
T ss_dssp             TTTEEEEEEEEESS-SSEEEEEE-TTS----SEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             CCceEEEEEEeCCC-CCccEEEEeCCC----CEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence            3332  22332221 224667778887    5555332      233345556655444

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.71  E-value=1.9e-06  Score=85.16  Aligned_cols=288  Identities=14%  Similarity=0.150  Sum_probs=156.2

Q ss_pred             CceEEEEEeCCcEEEEE-ccCeEEEeecCCcee----eEEEe------ecChHHHhhcccccEEEEcCCCc--EEEEEec
Q 005459           21 SQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKV----RLGKY------KRDSESVQREGENLQAVWSPDTK--LIAVVTS   87 (696)
Q Consensus        21 ~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~----~l~~~------~r~~~sl~~~G~~~~v~wsPDg~--~lav~t~   87 (696)
                      -...|.|+.+|.+||++ .++.|.++.-.+...    -...+      -.-.++++-...+..+.|-+++.  .+.+.|.
T Consensus        27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN  106 (433)
T KOG1354|consen   27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN  106 (433)
T ss_pred             ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence            44558899999999999 467888886542221    11111      01134555556778999999886  5778899


Q ss_pred             CcEEEEEEEEecCccc--c-cCCCCC----CCceeeee---eEEE---eeeccccccceeEEEeeeCC-CeEEEEecCCc
Q 005459           88 SLYLHIFKVQITEKSI--Q-IGGKQP----SGLFFIKI---SLVL---NEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGS  153 (696)
Q Consensus        88 dg~l~l~~l~~~~~~~--~-~~~~~~----~~~~~~~~---~l~~---~~~~~~~~~~~~v~~~~~~~-~~llv~t~~g~  153 (696)
                      |.+|++|++.....+.  + .+...+    ..+.++.+   ++..   ..++....+.-.|.+++.+. .+-++..+|=.
T Consensus       107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLR  186 (433)
T KOG1354|consen  107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLR  186 (433)
T ss_pred             CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecccee
Confidence            9999999997544321  0 000001    11111111   1111   11122345566666666544 23444445555


Q ss_pred             EEEEecCCcc-ccceeec-cCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcc-eEEEEEeCC
Q 005459          154 LYSISWKGEF-YGAFELV-HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR-LLFVLYSNG  230 (696)
Q Consensus       154 i~~~~w~~~~-~~~~~~~-~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~s~dG  230 (696)
                      |-+  |+-+. .+.+.+. .+|+--.                            +-..-|++-+|+|..+ .++.-++.|
T Consensus       187 INL--Wnlei~d~sFnIVDIKP~nmE----------------------------eLteVITsaEFhp~~cn~f~YSSSKG  236 (433)
T KOG1354|consen  187 INL--WNLEIIDQSFNIVDIKPANME----------------------------ELTEVITSAEFHPHHCNVFVYSSSKG  236 (433)
T ss_pred             eee--ccccccCCceeEEEccccCHH----------------------------HHHHHHhhhccCHhHccEEEEecCCC
Confidence            544  65443 2333221 1221100                            0112356667888774 333334444


Q ss_pred             cEEEEeec-----cCCceeeee-eeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459          231 QLMSCSVS-----KKGLKLAEF-IKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW  300 (696)
Q Consensus       231 ~~~~~~~~-----d~~~~~~~~-~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~  300 (696)
                      .+-++-..     |..-++... +.+...   .+.-..+. +.|+++|++|.+-.- -+|++||+....+++.+...++.
T Consensus       237 tIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~  315 (433)
T KOG1354|consen  237 TIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEY  315 (433)
T ss_pred             cEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHh
Confidence            44443222     111111110 011000   11123456 899999999987432 69999999776777777776432


Q ss_pred             C-------CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459          301 G-------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC  339 (696)
Q Consensus       301 ~-------~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~  339 (696)
                      .       |....--.=..++||-++.++++|+..+-.+++++..+
T Consensus       316 lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  316 LRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             HHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence            1       11111112245899999999999999999999996544

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.71  E-value=2.2e-07  Score=103.97  Aligned_cols=140  Identities=12%  Similarity=0.095  Sum_probs=106.4

Q ss_pred             EEeCCcEEEEeeccCCceeeeeee---cceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceee-EEeeccC
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIK---IDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIR-TVSLYDW  300 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~-~~~~~~~  300 (696)
                      .+++--.+++++--+.+-+|....   +..+.+|++.+. +.++.||+++|+.+.|.++|+|++++ .+... +.-+   
T Consensus       141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s-~~~~~~~~fg---  216 (967)
T KOG0974|consen  141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS-REVLGCTGFG---  216 (967)
T ss_pred             ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccc-ccccCccccc---
Confidence            344444555556666677776542   223478999888 99999999999999999999999998 44333 4444   


Q ss_pred             CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEE
Q 005459          301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQ  377 (696)
Q Consensus       301 ~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~  377 (696)
                           |++.|..+.|.|.  .++++++|.+.++|+..+..+. .+.+|--..+..++.+++.    ...+++.   .+++
T Consensus       217 -----HsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~----~~~vT~g~Ds~lk~  284 (967)
T KOG0974|consen  217 -----HSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGV----IIKVTGGNDSTLKL  284 (967)
T ss_pred             -----ccceeEEEEeccc--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCc----eEEEeeccCcchhh
Confidence                 9999999999998  9999999999999987776544 7777766678888887775    4555554   6777


Q ss_pred             EcCC
Q 005459          378 WDEY  381 (696)
Q Consensus       378 W~~~  381 (696)
                      |+..
T Consensus       285 ~~l~  288 (967)
T KOG0974|consen  285 WDLN  288 (967)
T ss_pred             hhhh
Confidence            7654

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.70  E-value=7.1e-07  Score=94.35  Aligned_cols=123  Identities=17%  Similarity=0.161  Sum_probs=109.9

Q ss_pred             CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459          267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR  346 (696)
Q Consensus       267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~  346 (696)
                      |-..||-|...|.|.+|++.. ++....+...      .|.+.|.++.|+.+-.+|-|++.|+.+..|+...++.++..+
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~-g~it~~~st~------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~  141 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAG-GEITAKLSTD------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK  141 (541)
T ss_pred             CceEEEeecCCccEEEEEecC-CeEEEEEecC------CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec
Confidence            445789999999999999987 7777777642      399999999999999999999999999999999999999888


Q ss_pred             cccccceecccccCCCCCCccceecce-eeEEEcCCCceEEEEecCCcceEEEEec
Q 005459          347 QISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERVLIFSF  401 (696)
Q Consensus       347 ~~~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~~~~~~v~~~~~  401 (696)
                      .. ...+.++..+||+    ..+++++ ++++|+.++.+++..+.||...|-.++|
T Consensus       142 ~~-~~~~~sl~is~D~----~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f  192 (541)
T KOG4547|consen  142 EQ-KPLVSSLCISPDG----KILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSF  192 (541)
T ss_pred             cC-CCccceEEEcCCC----CEEEeccceEEEEEccCceEEEEecCCCcceEEEEE
Confidence            77 6779999999998    8888887 9999999999999999999999977776

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.70  E-value=3.7e-06  Score=91.59  Aligned_cols=126  Identities=10%  Similarity=0.012  Sum_probs=77.3

Q ss_pred             EEEEeCCcEEEEee-ccCCceeeeeee------cceecCCCCeEE-EEEcCCCcEEEEEecC---CeEEEEEccCCCcee
Q 005459          224 FVLYSNGQLMSCSV-SKKGLKLAEFIK------IDKELGSGDAVC-ASIAPEQQILAVGTRR---GVVELYDLAESASLI  292 (696)
Q Consensus       224 ~~~s~dG~~~~~~~-~d~~~~~~~~~~------~~~~~~~~~~v~-v~~sp~~~~la~g~~d---g~v~vw~~~~~~~~~  292 (696)
                      ..++|||+.++..+ .++..++|....      .+.+..+...+. .+|||||+.||..+.+   ..|.+||+.+ ++. 
T Consensus       286 p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~-  363 (428)
T PRK01029        286 PSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD-  363 (428)
T ss_pred             eEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-
Confidence            35789998766655 355555664321      112223333333 8999999999987653   4689999876 443 


Q ss_pred             eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc---CCcEEEEEccCCeeEEEeecccccceecccccCC
Q 005459          293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK---SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN  361 (696)
Q Consensus       293 ~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~---Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~  361 (696)
                      +.+..        ....+....|+|||+.|+....   +..+.+|++.+++...-..+  ...+..++|+|.
T Consensus       364 ~~Lt~--------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~--~g~~~~p~Ws~~  425 (428)
T PRK01029        364 YQLTT--------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG--SGEKRFPSWGAF  425 (428)
T ss_pred             EEccC--------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCcccCceecCC
Confidence            33333        2345677999999998875443   24688888887764333222  233556666664

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.69  E-value=2e-05  Score=83.77  Aligned_cols=260  Identities=14%  Similarity=0.125  Sum_probs=140.8

Q ss_pred             cEE-EEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeec
Q 005459          269 QIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ  347 (696)
Q Consensus       269 ~~l-a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~  347 (696)
                      +++ ++-..+|.|.|.|.++ .+.+.++..        ....-..+.|+|||+++.+++.||.|.++|+.+.+.+.+++.
T Consensus         6 ~l~~V~~~~~~~v~viD~~t-~~~~~~i~~--------~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~   76 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGAT-NKVVARIPT--------GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV   76 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT--SEEEEEE---------STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-
T ss_pred             cEEEEEecCCCEEEEEECCC-CeEEEEEcC--------CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec
Confidence            445 4456689999999887 778888876        333345578999999999999999999999999999999986


Q ss_pred             ccccceecccccCCCCCCccceecce----eeEEEcCCCceEEEEecCC-------cceE---EEEeccee-eeeccCCC
Q 005459          348 ISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGS-------SERV---LIFSFGKC-CLNRGVSG  412 (696)
Q Consensus       348 ~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~~-------~~~v---~~~~~~~~-~~s~~~d~  412 (696)
                      . . ....++++||+    ++++.+.    .+.++|.++.+++......       ..++   +....... +++.-.  
T Consensus        77 G-~-~~~~i~~s~DG----~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd--  148 (369)
T PF02239_consen   77 G-G-NPRGIAVSPDG----KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD--  148 (369)
T ss_dssp             S-S-EEEEEEE--TT----TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT--
T ss_pred             C-C-CcceEEEcCCC----CEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc--
Confidence            5 2 35778999999    8777665    8889999998888765321       1233   22122332 222221  


Q ss_pred             CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEE-eCCccE-EEEccCCceEecC-
Q 005459          413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA-GLHGLI-LYDIRQKKWRVFG-  489 (696)
Q Consensus       413 ~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~a-g~dG~i-~w~~~sg~w~~f~-  489 (696)
                      +-++|.+......          .       +..+............|+|||+|+.+| -.+..+ ++|..+++..... 
T Consensus       149 ~~~I~vVdy~d~~----------~-------~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~  211 (369)
T PF02239_consen  149 TGEIWVVDYSDPK----------N-------LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID  211 (369)
T ss_dssp             TTEEEEEETTTSS----------C-------EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             CCeEEEEEecccc----------c-------cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence            2234444322211          0       011222223345678999999987665 445566 9999988754332 


Q ss_pred             --Cccceee---eEE-E-eEeee----CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEE--ccCCEE
Q 005459          490 --DITQEQK---IQS-K-GLLWL----GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD--VYEDYI  556 (696)
Q Consensus       490 --~~~~e~~---~~v-~-~~~w~----~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~l  556 (696)
                        ...++..   +.- . |..|.    +...+.. .. .   ..+.+++.   .+.....+.++...++.+.  |++.++
T Consensus       212 ~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~-ig-~---~~v~v~d~---~~wkvv~~I~~~G~glFi~thP~s~~v  283 (369)
T PF02239_consen  212 TGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPL-IG-T---DPVSVHDD---YAWKVVKTIPTQGGGLFIKTHPDSRYV  283 (369)
T ss_dssp             -SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEE-EE------TTT-STT---TBTSEEEEEE-SSSS--EE--TT-SEE
T ss_pred             ccccccccccccccCCCcceEEeeccccceeccc-cc-C---Cccccchh---hcCeEEEEEECCCCcceeecCCCCccE
Confidence              2222211   111 1 44563    2233222 11 1   12223433   2334566667777776654  677888


Q ss_pred             EEE----EcCceEEEEEE
Q 005459          557 LVT----YRPFDVHIFHV  570 (696)
Q Consensus       557 lv~----~~d~~~~l~~~  570 (696)
                      .|.    .....+.+++.
T Consensus       284 wvd~~~~~~~~~v~viD~  301 (369)
T PF02239_consen  284 WVDTFLNPDADTVQVIDK  301 (369)
T ss_dssp             EEE-TT-SSHT-EEEEEC
T ss_pred             EeeccCCCCCceEEEEEC
Confidence            884    12245555543

...

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.69  E-value=2.8e-07  Score=94.85  Aligned_cols=286  Identities=10%  Similarity=0.121  Sum_probs=168.6

Q ss_pred             CCceEEEEEeCCcEEEEEcc-CeEEEeecCCceeeEEEeecChHHHhhc-ccccEEEEcC--CCcEEEEEecCcEEEEEE
Q 005459           20 SSQQIIYFKVNNGLLLIASP-CHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSP--DTKLIAVVTSSLYLHIFK   95 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~~~-~~v~iW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wsP--Dg~~lav~t~dg~l~l~~   95 (696)
                      +-+.-|.|+..|..|++.+| .+|.+||-. ...+...+.      ..| -.+....|-|  +.+.|+..+.||.+++=.
T Consensus       143 GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~-~~~~~l~f~------SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  143 GCVNTVHFNQRGDVLASGSDDLQVVVWDWV-SGSPKLSFE------SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             CccceeeecccCceeeccCccceEEeehhh-ccCcccccc------cccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            44556889999999999965 589999984 222111110      112 2234566777  446899999999998877


Q ss_pred             EEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eee-CCCeEEEEecCCcEEEEecCCccccceeeccC
Q 005459           96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVS-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHS  172 (696)
Q Consensus        96 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~-~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~  172 (696)
                      +......                    +..+.+..+.+.|.-  +.+ +...++.++.|+.+.-++.........     
T Consensus       216 i~~t~~~--------------------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~-----  270 (559)
T KOG1334|consen  216 ILETGYV--------------------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK-----  270 (559)
T ss_pred             eccccce--------------------ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce-----
Confidence            7533211                    001111222223322  222 236788888888887665332111100     


Q ss_pred             CCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCc-EEEEeeccCCceeeeeeecc
Q 005459          173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKID  251 (696)
Q Consensus       173 p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~~~~~~~~  251 (696)
                                       +. ..       ...........+++          +.|-.. .++++..|.-++++|.....
T Consensus       271 -----------------~~-cr-------~~~~~~~v~L~~Ia----------~~P~nt~~faVgG~dqf~RvYD~R~~~  315 (559)
T KOG1334|consen  271 -----------------FV-CR-------EADEKERVGLYTIA----------VDPRNTNEFAVGGSDQFARVYDQRRID  315 (559)
T ss_pred             -----------------ee-ee-------ccCCccceeeeeEe----------cCCCCccccccCChhhhhhhhcccchh
Confidence                             00 00       00000012233333          333322 44445555555555544221


Q ss_pred             ee----------------cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCC-C----------ceeeE-EeeccCCCC
Q 005459          252 KE----------------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES-A----------SLIRT-VSLYDWGYS  303 (696)
Q Consensus       252 ~~----------------~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~-~----------~~~~~-~~~~~~~~~  303 (696)
                      +.                ..+...+|++++.++.-|.+...|-.|.+++-... +          ...+. .++      
T Consensus       316 ~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKG------  389 (559)
T KOG1334|consen  316 KEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKG------  389 (559)
T ss_pred             hccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcc------
Confidence            11                22345677999988877777788999999964431 1          11111 333      


Q ss_pred             CCCCC--CeEEEEE-CCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEE
Q 005459          304 MDDTG--PVSCIAW-TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQ  377 (696)
Q Consensus       304 ~~h~g--~V~~l~~-spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~  377 (696)
                        |..  .|..+-| -|...++++|+..|.|.+|+-.+++++.-+++. ...|+|+.-+|..    ..|++..   .+++
T Consensus       390 --HrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD-r~VVNCLEpHP~~----PvLAsSGid~DVKI  462 (559)
T KOG1334|consen  390 --HRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD-RHVVNCLEPHPHL----PVLASSGIDHDVKI  462 (559)
T ss_pred             --cccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc-cceEeccCCCCCC----chhhccCCccceee
Confidence              643  4777775 589999999999999999999999998888875 3479999988886    5555444   8899


Q ss_pred             EcCCCceE
Q 005459          378 WDEYGYRL  385 (696)
Q Consensus       378 W~~~~~~l  385 (696)
                      |.+.+.+.
T Consensus       463 WTP~~~er  470 (559)
T KOG1334|consen  463 WTPLTAER  470 (559)
T ss_pred             ecCCcccc
Confidence            99865443

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.69  E-value=3.4e-07  Score=102.44  Aligned_cols=192  Identities=14%  Similarity=0.089  Sum_probs=133.8

Q ss_pred             EEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCC
Q 005459           73 AVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG  152 (696)
Q Consensus        73 v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g  152 (696)
                      ..+.-+.+.+++.+.++.+.+|+...+......   +..+.+.-              ....+.-++.+.=++++|+--+
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i---~~~er~~l--------------~~~~~~g~s~~~~~i~~gsv~~  155 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKI---QSDERCTL--------------YSSLIIGDSAEELYIASGSVFG  155 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhc---CCCceEEE--------------EeEEEEeccCcEEEEEeccccc
Confidence            444556778888888888999888644321111   00000000              0001111222334677777788


Q ss_pred             cEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcE
Q 005459          153 SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQL  232 (696)
Q Consensus       153 ~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~  232 (696)
                      .|..|.|......                                    .-+.+|...|.++.          ++.||++
T Consensus       156 ~iivW~~~~dn~p------------------------------------~~l~GHeG~iF~i~----------~s~dg~~  189 (967)
T KOG0974|consen  156 EIIVWKPHEDNKP------------------------------------IRLKGHEGSIFSIV----------TSLDGRY  189 (967)
T ss_pred             cEEEEeccccCCc------------------------------------ceecccCCceEEEE----------EccCCcE
Confidence            8888766621111                                    12345667777765          7889999


Q ss_pred             EEEeeccCCceeeeeeeccee----cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCC
Q 005459          233 MSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT  307 (696)
Q Consensus       233 ~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~  307 (696)
                      +++.+.|.++++|.+.+.+..    .+|...+. +.|.|.  .|++++.|-+.++|+.+.  ..+.++..        |.
T Consensus       190 i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~--~~l~~y~~--------h~  257 (967)
T KOG0974|consen  190 IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG--TQLEVYDE--------HS  257 (967)
T ss_pred             EEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc--ceehhhhh--------hh
Confidence            999999999999999877654    57888888 999998  999999999999998764  33445555        65


Q ss_pred             C-CeEEEEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459          308 G-PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC  339 (696)
Q Consensus       308 g-~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~  339 (696)
                      + .+..++..++...+.+++.|+++++|+..+.
T Consensus       258 g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  258 GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             hcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            4 5999999999999999999999999998654

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.69  E-value=7.2e-05  Score=88.40  Aligned_cols=296  Identities=17%  Similarity=0.157  Sum_probs=160.9

Q ss_pred             CcccEEEEEEccCcceEEEEEeCCcEEEEee----ccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEE
Q 005459          207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSV----SKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL  282 (696)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~----~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~v  282 (696)
                      ....|.+++|-+.....+.++.+|.++.+.-    .+..+.+....       -.+..+++||||+.+||..+.+|++.+
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v-------d~GI~a~~WSPD~Ella~vT~~~~l~~  146 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV-------DSGILAASWSPDEELLALVTGEGNLLL  146 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE-------cCcEEEEEECCCcCEEEEEeCCCEEEE
Confidence            3456999999999998899999999888732    22222221111       124445999999999999999999887


Q ss_pred             EEccCCCcee------------------------eEEeecc---------CCCCC-------CCCCCeEEEEECCCCCeE
Q 005459          283 YDLAESASLI------------------------RTVSLYD---------WGYSM-------DDTGPVSCIAWTPDNSAF  322 (696)
Q Consensus       283 w~~~~~~~~~------------------------~~~~~~~---------~~~~~-------~h~g~V~~l~~spdg~~l  322 (696)
                      -+-+-  ..+                        ..++|..         -|..+       .+...-..|+|-.||+++
T Consensus       147 mt~~f--d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yF  224 (928)
T PF04762_consen  147 MTRDF--DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYF  224 (928)
T ss_pred             Eeccc--eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEE
Confidence            65321  111                        1111110         00000       022244579999999999


Q ss_pred             EEEEc---C---CcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCC--cc
Q 005459          323 AVGWK---S---RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGS--SE  394 (696)
Q Consensus       323 asg~~---D---g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~--~~  394 (696)
                      |+.+-   +   +.+|||+=+| .+..+.+.- .+--.+++|.|.|    ..++                 ....+  ..
T Consensus       225 AVss~~~~~~~~R~iRVy~ReG-~L~stSE~v-~gLe~~l~WrPsG----~lIA-----------------~~q~~~~~~  281 (928)
T PF04762_consen  225 AVSSVEPETGSRRVIRVYSREG-ELQSTSEPV-DGLEGALSWRPSG----NLIA-----------------SSQRLPDRH  281 (928)
T ss_pred             EEEEEEcCCCceeEEEEECCCc-eEEeccccC-CCccCCccCCCCC----CEEE-----------------EEEEcCCCc
Confidence            99875   2   4788998764 333332210 1111233444443    2222                 22111  11


Q ss_pred             eEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCc
Q 005459          395 RVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG  474 (696)
Q Consensus       395 ~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG  474 (696)
                      .|+-|.-         .|      +..|+                  +.+|  +......|..++|++|+..||+--.|.
T Consensus       282 ~VvFfEr---------NG------Lrhge------------------F~l~--~~~~~~~v~~l~Wn~ds~iLAv~~~~~  326 (928)
T PF04762_consen  282 DVVFFER---------NG------LRHGE------------------FTLR--FDPEEEKVIELAWNSDSEILAVWLEDR  326 (928)
T ss_pred             EEEEEec---------CC------cEeee------------------EecC--CCCCCceeeEEEECCCCCEEEEEecCC
Confidence            1111111         00      00111                  1111  122345689999999999999988777


Q ss_pred             cEEEEccCCceEecCCccceeeeE----EEeEeeeC---cEEEEEEeecC--------------------------CCeE
Q 005459          475 LILYDIRQKKWRVFGDITQEQKIQ----SKGLLWLG---KIIVVCNYIDS--------------------------SNTY  521 (696)
Q Consensus       475 ~i~w~~~sg~w~~f~~~~~e~~~~----v~~~~w~~---~~lv~~~~~~~--------------------------~~~~  521 (696)
                      .-+|-...-.|=+    .||-.+.    +..+.|+.   ..|.+.+..+.                          -+..
T Consensus       327 vqLWt~~NYHWYL----Kqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~  402 (928)
T PF04762_consen  327 VQLWTRSNYHWYL----KQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGN  402 (928)
T ss_pred             ceEEEeeCCEEEE----EEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCC
Confidence            3399998888843    2222221    11244542   11211111000                          0123


Q ss_pred             EEEEeeCC--CCCccceeEEeecCCccEEEEc--cCCEEEEEEcCceEEEEEEEEe
Q 005459          522 ELLFYPRY--HLDQSSLLCRKSLLAKPIVMDV--YEDYILVTYRPFDVHIFHVKLF  573 (696)
Q Consensus       522 ~lr~y~~~--~l~~~~~~~~~~~~~~~l~~~~--~~~~llv~~~d~~~~l~~~~~~  573 (696)
                      .|++.|..  ..--.+..+...+++++..+..  ....+++...|+.+.+|.+...
T Consensus       403 ~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  403 KLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             eEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence            56666654  2233344456667776665553  4444888899999999998764

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.69  E-value=9.1e-07  Score=88.95  Aligned_cols=143  Identities=20%  Similarity=0.225  Sum_probs=108.3

Q ss_pred             EEEEeecc--CCceeeeeeeccee----------cCCCCeEE---EEEcCC--CcEEEEEecCCeEEEEEccCCCceeeE
Q 005459          232 LMSCSVSK--KGLKLAEFIKIDKE----------LGSGDAVC---ASIAPE--QQILAVGTRRGVVELYDLAESASLIRT  294 (696)
Q Consensus       232 ~~~~~~~d--~~~~~~~~~~~~~~----------~~~~~~v~---v~~sp~--~~~la~g~~dg~v~vw~~~~~~~~~~~  294 (696)
                      ++++++..  ..+++||....++.          .+-.-+|.   +.|-+.  ...||+++.-+.||+||.+...+++.+
T Consensus       163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~  242 (412)
T KOG3881|consen  163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ  242 (412)
T ss_pred             eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence            34445544  56778887765332          22223343   778887  889999999999999999975677777


Q ss_pred             EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEE-eecccccceecccccCCCCCCccceecce
Q 005459          295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST-IRQISLSSISSPIVKPNQDCKYEPLMSGT  373 (696)
Q Consensus       295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~-l~~~~~~~v~~~~~sp~~~~~~~~l~sg~  373 (696)
                      +..        -..+++++...|+|+.+.+|..-+.+..+|..++++... +++. .++++++..+|..    ..+++++
T Consensus       243 fd~--------~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~-tGsirsih~hp~~----~~las~G  309 (412)
T KOG3881|consen  243 FDF--------LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI-TGSIRSIHCHPTH----PVLASCG  309 (412)
T ss_pred             ecc--------ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc-cCCcceEEEcCCC----ceEEeec
Confidence            776        577899999999999999999999999999999887654 7776 6778888888886    6677665


Q ss_pred             ---eeEEEcCCCceEEE
Q 005459          374 ---SMMQWDEYGYRLYA  387 (696)
Q Consensus       374 ---~~~~W~~~~~~l~~  387 (696)
                         -+++.|.++.+++.
T Consensus       310 LDRyvRIhD~ktrkll~  326 (412)
T KOG3881|consen  310 LDRYVRIHDIKTRKLLH  326 (412)
T ss_pred             cceeEEEeecccchhhh
Confidence               66777777655543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.65  E-value=6.7e-06  Score=89.90  Aligned_cols=208  Identities=16%  Similarity=0.124  Sum_probs=121.0

Q ss_pred             eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC---CcEEEEEccCCeeEEEeecccccceec
Q 005459          279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGCRLMSTIRQISLSSISS  355 (696)
Q Consensus       279 ~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D---g~v~vW~~~~~~~~~~l~~~~~~~v~~  355 (696)
                      .|.++|.+  +...+.+..        +...+.+.+|||||+.||.+..+   ..|.+|++.+++... +..+ ...+.+
T Consensus       171 ~l~~~d~~--g~~~~~l~~--------~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~-~~~~~~  238 (417)
T TIGR02800       171 ELQVADYD--GANPQTITR--------SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASF-PGMNGA  238 (417)
T ss_pred             eEEEEcCC--CCCCEEeec--------CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecC-CCCccc
Confidence            56666654  344455555        66779999999999999987654   479999998875432 2222 234567


Q ss_pred             ccccCCCCCCcccee-cce-----eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeec-cCCCCceeeeeeecCCe
Q 005459          356 PIVKPNQDCKYEPLM-SGT-----SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNR-GVSGMTYARQVIYGEDR  425 (696)
Q Consensus       356 ~~~sp~~~~~~~~l~-sg~-----~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~-~~d~~~~~w~~~~~~~~  425 (696)
                      ++|+|++    +.++ +..     .+..|+.++++...... +....  ..+++ ++.++.. ..++...+|.+.....+
T Consensus       239 ~~~spDg----~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       239 PAFSPDG----SKLAVSLSKDGNPDIYVMDLDGKQLTRLTN-GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             eEECCCC----CEEEEEECCCCCccEEEEECCCCCEEECCC-CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            8899998    5443 221     57778887765543332 22111  34555 5555433 33333333332211110


Q ss_pred             EEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCc---cE-EEEccCCceEecCCccceeeeEEEe
Q 005459          426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG---LI-LYDIRQKKWRVFGDITQEQKIQSKG  501 (696)
Q Consensus       426 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG---~i-~w~~~sg~w~~f~~~~~e~~~~v~~  501 (696)
                                         ...+..+...+...+|||||++++.++.++   .+ +||+.++.++.+.....     ...
T Consensus       314 -------------------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-----~~~  369 (417)
T TIGR02800       314 -------------------VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGL-----DES  369 (417)
T ss_pred             -------------------EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCC-----CCC
Confidence                               111112233456779999999999998876   67 99998887766543211     123


Q ss_pred             Eeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459          502 LLWL--GKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       502 ~~w~--~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      ..|.  +..|+.++.  .....++.+++.+
T Consensus       370 p~~spdg~~l~~~~~--~~~~~~l~~~~~~  397 (417)
T TIGR02800       370 PSFAPNGRMILYATT--RGGRGVLGLVSTD  397 (417)
T ss_pred             ceECCCCCEEEEEEe--CCCcEEEEEEECC
Confidence            4564  445665533  2334567777653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.62  E-value=7e-07  Score=94.38  Aligned_cols=95  Identities=15%  Similarity=0.005  Sum_probs=83.7

Q ss_pred             CCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEE
Q 005459          255 GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV  333 (696)
Q Consensus       255 ~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~v  333 (696)
                      +|.+.+. +.++.+-..|-+++.|+.+.+|+..+ ...++.++.        .+..+.+++.+|||..|++|+  +.|++
T Consensus       100 ~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~--------~~~~~~sl~is~D~~~l~~as--~~ik~  168 (541)
T KOG4547|consen  100 KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWKE--------QKPLVSSLCISPDGKILLTAS--RQIKV  168 (541)
T ss_pred             CCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeecc--------CCCccceEEEcCCCCEEEecc--ceEEE
Confidence            5666666 77788899999999999999999988 788888887        677899999999999999998  59999


Q ss_pred             EEccCCeeEEEeecccccceecccccCC
Q 005459          334 WSVSGCRLMSTIRQISLSSISSPIVKPN  361 (696)
Q Consensus       334 W~~~~~~~~~~l~~~~~~~v~~~~~sp~  361 (696)
                      |++.+++.+.++.|| .+.|+++.|--+
T Consensus       169 ~~~~~kevv~~ftgh-~s~v~t~~f~~~  195 (541)
T KOG4547|consen  169 LDIETKEVVITFTGH-GSPVRTLSFTTL  195 (541)
T ss_pred             EEccCceEEEEecCC-CcceEEEEEEEe
Confidence            999999999999999 677888888655

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.61  E-value=2.7e-05  Score=81.10  Aligned_cols=169  Identities=17%  Similarity=0.172  Sum_probs=103.0

Q ss_pred             EEEEEcCCCcEEEEEec-----------CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE--EE
Q 005459          260 VCASIAPEQQILAVGTR-----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV--GW  326 (696)
Q Consensus       260 v~v~~sp~~~~la~g~~-----------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las--g~  326 (696)
                      +.+-|++.|++|.+--.           ..++.++++..  ..++....        -.++|...+|+|+++.+++  |.
T Consensus       226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~--------~~~pVhdf~W~p~S~~F~vi~g~  295 (561)
T COG5354         226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKD--------LKDPVHDFTWEPLSSRFAVISGY  295 (561)
T ss_pred             cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccceecc--------ccccceeeeecccCCceeEEecc
Confidence            33677777776554221           13445555542  22222222        5899999999999997765  45


Q ss_pred             cCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce------eeEEEcCCCceEEE-EecCCcceEEEE
Q 005459          327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYA-IEEGSSERVLIF  399 (696)
Q Consensus       327 ~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~-~~~~~~~~v~~~  399 (696)
                      .+-.+.++++.+. +...+.+.   .=+.+.|+|..    +.++.+.      .+.+|++.+..... .+.+.......+
T Consensus       296 ~pa~~s~~~lr~N-l~~~~Pe~---~rNT~~fsp~~----r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~w  367 (561)
T COG5354         296 MPASVSVFDLRGN-LRFYFPEQ---KRNTIFFSPHE----RYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDW  367 (561)
T ss_pred             cccceeecccccc-eEEecCCc---ccccccccCcc----cEEEEecCCccccceEEeccCCceEEEEEeecCCceEeec
Confidence            7889999999887 55555543   23456788876    5544322      77889887766555 555555556666


Q ss_pred             ec-ceeeeec------cCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC
Q 005459          400 SF-GKCCLNR------GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL  472 (696)
Q Consensus       400 ~~-~~~~~s~------~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~  472 (696)
                      ++ +....+.      ..|..+++|++....-                       +     ....+.|.|.|++.-+.+.
T Consensus       368 spd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~-----------------------f-----el~~~~W~p~~~~~ttsSs  419 (561)
T COG5354         368 SPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV-----------------------F-----ELTNITWDPSGQYVTTSSS  419 (561)
T ss_pred             cCCceEEEecCCCcccccCcceEEEEecCchh-----------------------h-----hhhhccccCCcccceeecc
Confidence            66 4433322      2366677777542211                       1     3456778888888776665


Q ss_pred             Cc
Q 005459          473 HG  474 (696)
Q Consensus       473 dG  474 (696)
                      ++
T Consensus       420 ~~  421 (561)
T COG5354         420 CP  421 (561)
T ss_pred             CC
Confidence            43

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.58  E-value=8e-06  Score=89.01  Aligned_cols=130  Identities=14%  Similarity=0.144  Sum_probs=67.0

Q ss_pred             EEEEeCCcE--E-EEeeccCCceee--eeeecc--eecCCCCe-EEEEEcCCCcEEEEEec-CC----eEEEEEccCC--
Q 005459          224 FVLYSNGQL--M-SCSVSKKGLKLA--EFIKID--KELGSGDA-VCASIAPEQQILAVGTR-RG----VVELYDLAES--  288 (696)
Q Consensus       224 ~~~s~dG~~--~-~~~~~d~~~~~~--~~~~~~--~~~~~~~~-v~v~~sp~~~~la~g~~-dg----~v~vw~~~~~--  288 (696)
                      -.++|||+.  + ++...++...+|  +...++  .+...... ...+|||||+.||..+. +|    .+..|+++..  
T Consensus       190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~  269 (428)
T PRK01029        190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI  269 (428)
T ss_pred             ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence            458899874  2 233334444444  433332  22211222 23799999999987653 23    3344666541  


Q ss_pred             CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE-cCCcEEEEEc--cC-CeeEEEeecccccceecccccCCC
Q 005459          289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSV--SG-CRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       289 ~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~-~Dg~v~vW~~--~~-~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      +...+....        +.+.....+|||||+.|+..+ .+|...+|.+  .+ +.....+..+ ...+..+.|+||+
T Consensus       270 g~~~~lt~~--------~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~-~~~~~~p~wSPDG  338 (428)
T PRK01029        270 GKPRRLLNE--------AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK-YRNSSCPAWSPDG  338 (428)
T ss_pred             CcceEeecC--------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC-CCCccceeECCCC
Confidence            122222222        233456789999999888665 4666666654  21 1112223222 2234555666665

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.56  E-value=1.5e-05  Score=87.57  Aligned_cols=181  Identities=17%  Similarity=0.166  Sum_probs=102.6

Q ss_pred             CCCCeEE-EEEcCCCcEEEEEecC---CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEE-EEEcCC
Q 005459          255 GSGDAVC-ASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKSR  329 (696)
Q Consensus       255 ~~~~~v~-v~~sp~~~~la~g~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~la-sg~~Dg  329 (696)
                      .+...+. .+|||||+.||..+.+   ..|.+|++++ ++. +.+..        ..+.+...+|||||+.|+ +...++
T Consensus       196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~-g~~-~~l~~--------~~g~~~~~~~SpDG~~la~~~~~~g  265 (430)
T PRK00178        196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT-GRR-EQITN--------FEGLNGAPAWSPDGSKLAFVLSKDG  265 (430)
T ss_pred             cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-CCE-EEccC--------CCCCcCCeEECCCCCEEEEEEccCC
Confidence            3444444 8999999999887644   3688889876 433 22332        344556789999999887 445555


Q ss_pred             --cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce------eeEEEcCCCceEEEEe-cCCcceEEEEe
Q 005459          330 --GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIE-EGSSERVLIFS  400 (696)
Q Consensus       330 --~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~~~-~~~~~~v~~~~  400 (696)
                        .|.+||+.++... .+..+ ......+.|+|++    +.++..+      .+..++..+++..... .+.......++
T Consensus       266 ~~~Iy~~d~~~~~~~-~lt~~-~~~~~~~~~spDg----~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~S  339 (430)
T PRK00178        266 NPEIYVMDLASRQLS-RVTNH-PAIDTEPFWGKDG----RTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLS  339 (430)
T ss_pred             CceEEEEECCCCCeE-EcccC-CCCcCCeEECCCC----CEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEEC
Confidence              4777898887643 34433 3345677899988    4443211      5666676666543322 22112224455


Q ss_pred             c-ceeeeeccC-CCC--ceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCC
Q 005459          401 F-GKCCLNRGV-SGM--TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH  473 (696)
Q Consensus       401 ~-~~~~~s~~~-d~~--~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~d  473 (696)
                      + ++.++..+. ++.  +.++++..++.+.                     + .+.......+|||||++++.++.+
T Consensus       340 pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~---------------------l-t~~~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        340 ADGKTLVMVHRQDGNFHVAAQDLQRGSVRI---------------------L-TDTSLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             CCCCEEEEEEccCCceEEEEEECCCCCEEE---------------------c-cCCCCCCCceECCCCCEEEEEEec
Confidence            5 555543332 221  2333333322211                     0 111112245899999999887754

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.55  E-value=0.00014  Score=73.17  Aligned_cols=249  Identities=16%  Similarity=0.242  Sum_probs=149.2

Q ss_pred             CCCeEEEEEcCCCcEEEEEec---CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC-CcE
Q 005459          256 SGDAVCASIAPEQQILAVGTR---RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGL  331 (696)
Q Consensus       256 ~~~~v~v~~sp~~~~la~g~~---dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D-g~v  331 (696)
                      -..++.++|+|+++.|-++-.   +|.|..|.++.....+..+.....     ...+-..++.++||++|+++... |.|
T Consensus        39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-----~g~~p~yvsvd~~g~~vf~AnY~~g~v  113 (346)
T COG2706          39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-----PGSPPCYVSVDEDGRFVFVANYHSGSV  113 (346)
T ss_pred             cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-----CCCCCeEEEECCCCCEEEEEEccCceE
Confidence            356677999999988887765   488999999863222222222110     11223889999999999988654 778


Q ss_pred             EEEEccC-CeeEEEee--cccccc----------eecccccCCCCCCccceecce----eeEEEcCCCceEEEEe-----
Q 005459          332 TVWSVSG-CRLMSTIR--QISLSS----------ISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIE-----  389 (696)
Q Consensus       332 ~vW~~~~-~~~~~~l~--~~~~~~----------v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~-----  389 (696)
                      .+.-+.. +.+.....  .| ...          +....+.|++    +++++..    ++.+++.+.+.|-...     
T Consensus       114 ~v~p~~~dG~l~~~v~~~~h-~g~~p~~rQ~~~h~H~a~~tP~~----~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~  188 (346)
T COG2706         114 SVYPLQADGSLQPVVQVVKH-TGSGPHERQESPHVHSANFTPDG----RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK  188 (346)
T ss_pred             EEEEcccCCccccceeeeec-CCCCCCccccCCccceeeeCCCC----CEEEEeecCCceEEEEEcccCccccccccccC
Confidence            8988743 43322211  11 111          5566778887    6766544    6777777766553322     


Q ss_pred             cCCcceEEEEec-ceeee-eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEE
Q 005459          390 EGSSERVLIFSF-GKCCL-NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFL  467 (696)
Q Consensus       390 ~~~~~~v~~~~~-~~~~~-s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~l  467 (696)
                      .+...+=+.|++ +|.+- ..-.++++.+|.......++         +....+..+|..|.+.+| .-.+.++|||++|
T Consensus       189 ~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~---------~~lQ~i~tlP~dF~g~~~-~aaIhis~dGrFL  258 (346)
T COG2706         189 PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF---------EELQTIDTLPEDFTGTNW-AAAIHISPDGRFL  258 (346)
T ss_pred             CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE---------EEeeeeccCccccCCCCc-eeEEEECCCCCEE
Confidence            222334477777 66553 33456677776655432221         112233346888888776 5678999999999


Q ss_pred             EEEeCCc-cE-EEEc--cCCceEecCCccceeeeEEEe--EeeeCcEEEEEEeecCCCeEEEEEeeCC
Q 005459          468 AVAGLHG-LI-LYDI--RQKKWRVFGDITQEQKIQSKG--LLWLGKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       468 a~ag~dG-~i-~w~~--~sg~w~~f~~~~~e~~~~v~~--~~w~~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      -+.-+.- .+ +|.+  .+++..+++....|.. .-++  +.-.+++|+++  .+  ++..|.+|.|+
T Consensus       259 YasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~-~PR~F~i~~~g~~Liaa--~q--~sd~i~vf~~d  321 (346)
T COG2706         259 YASNRGHDSIAVFSVDPDGGKLELVGITPTEGQ-FPRDFNINPSGRFLIAA--NQ--KSDNITVFERD  321 (346)
T ss_pred             EEecCCCCeEEEEEEcCCCCEEEEEEEeccCCc-CCccceeCCCCCEEEEE--cc--CCCcEEEEEEc
Confidence            7665432 34 6655  4566555443322221 1233  34457889988  43  34569999997

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.53  E-value=2.3e-05  Score=82.59  Aligned_cols=284  Identities=15%  Similarity=0.187  Sum_probs=159.6

Q ss_pred             EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE-----EEcCC-----c
Q 005459          261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-----GWKSR-----G  330 (696)
Q Consensus       261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las-----g~~Dg-----~  330 (696)
                      ..++|++|+++|.+ .+..++|++... ...+.+...         . .+.++.|||-|++|.+     -..|+     .
T Consensus        39 v~~~S~~G~lfA~~-~~~~v~i~~~~~-~~~~lt~~~---------~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn  106 (566)
T KOG2315|consen   39 VFAYSNNGRLFAYS-DNQVVKVFEIAT-LKVVLCVEL---------K-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPN  106 (566)
T ss_pred             eEEEcCCCcEEEEE-cCCeEEEEEccC-CcEEEEecc---------c-eeeeeeecccccccccccccccccCCCCCCCc
Confidence            38899999999985 467899999877 444444443         2 6899999999999875     22333     4


Q ss_pred             EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceE--EEEecc---eee
Q 005459          331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERV--LIFSFG---KCC  405 (696)
Q Consensus       331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v--~~~~~~---~~~  405 (696)
                      +++|++.++.....+....+.. +++.|++|..  .-.-+.+..+.+++..+.+....- -|..++  +.++++   ..+
T Consensus       107 ~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEs--l~arlv~nev~f~~~~~f~~~~~k-l~~~~i~~f~lSpgp~~~~v  182 (566)
T KOG2315|consen  107 VLVYNVETGVQRSQIQKKMQNG-WVPQFSIDES--LAARLVSNEVQFYDLGSFKTIQHK-LSVSGITMLSLSPGPEPPFV  182 (566)
T ss_pred             eeeeeeccceehhheehhhhcC-cccccccchh--hhhhhhcceEEEEecCCccceeee-eeccceeeEEecCCCCCceE
Confidence            6799999977666665532332 6888888851  111122336677776653322111 122233  444442   011


Q ss_pred             e-----eccCCCCceeeeeeec------------------------CCeEEEEecCCCCcc--------eeEEeecC---
Q 005459          406 L-----NRGVSGMTYARQVIYG------------------------EDRLLVVQSEDTDEL--------KILHLNLP---  445 (696)
Q Consensus       406 ~-----s~~~d~~~~~w~~~~~------------------------~~~~~~~~~~~~~~~--------~w~~~~~~---  445 (696)
                      +     ..+.-..+++|.+...                        ...+++....|.+..        ..+.+.+-   
T Consensus       183 AvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s  262 (566)
T KOG2315|consen  183 AVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES  262 (566)
T ss_pred             EEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce
Confidence            1     2333344555543311                        111222222221110        00111000   


Q ss_pred             -eeeecCCCceEEEEEcCCCCEEEEEeC--CccE-EEEccCCceEecCCccceeeeEEE-eEee--eCcEEEEEEeecCC
Q 005459          446 -VSYISQNWPVQHVAASKDGMFLAVAGL--HGLI-LYDIRQKKWRVFGDITQEQKIQSK-GLLW--LGKIIVVCNYIDSS  518 (696)
Q Consensus       446 -~~~~~~~~~I~~va~s~dG~~la~ag~--dG~i-~w~~~sg~w~~f~~~~~e~~~~v~-~~~w--~~~~lv~~~~~~~~  518 (696)
                       ..-+.-++||.++.|+|+|+-+|+.-.  =-.+ +||.+..----|+    |.   -+ .+-|  ++++++.|++.  +
T Consensus       263 ~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~----eg---pRN~~~fnp~g~ii~lAGFG--N  333 (566)
T KOG2315|consen  263 VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP----EG---PRNTAFFNPHGNIILLAGFG--N  333 (566)
T ss_pred             EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC----CC---CccceEECCCCCEEEEeecC--C
Confidence             001123789999999999987766432  3455 8877654322222    11   22 3555  47888888764  4


Q ss_pred             CeEEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEEEEEc------CceEEEEEEE
Q 005459          519 NTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYR------PFDVHIFHVK  571 (696)
Q Consensus       519 ~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~------d~~~~l~~~~  571 (696)
                      -.+.+-||+..+.  ..+.......+...-.+++|.+++++++      |+.++|||+.
T Consensus       334 L~G~mEvwDv~n~--K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  334 LPGDMEVWDVPNR--KLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             CCCceEEEeccch--hhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            5678999998621  1122223333445567799999999544      6889999985

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.52  E-value=0.00074  Score=68.17  Aligned_cols=251  Identities=11%  Similarity=0.117  Sum_probs=135.8

Q ss_pred             EEEEEc---cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec---CcEEEEEEEEecCcccccC
Q 005459           33 LLLIAS---PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS---SLYLHIFKVQITEKSIQIG  106 (696)
Q Consensus        33 lla~~~---~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~---dg~l~l~~l~~~~~~~~~~  106 (696)
                      ++.+-+   +..|++|++..+...+...    +-+.+.+..+-++|+|+.+.|-++-.   +|.+--|.++.....+.. 
T Consensus         6 YiGtyT~~~s~gI~v~~ld~~~g~l~~~----~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~-   80 (346)
T COG2706           6 YIGTYTKRESQGIYVFNLDTKTGELSLL----QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF-   80 (346)
T ss_pred             EEeeecccCCCceEEEEEeCcccccchh----hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE-
Confidence            444445   5679999987332222211    22345577788999999998888654   477888888754222211 


Q ss_pred             CCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecC-CcEEEEecCCccccceeeccCCCCCccccccccc
Q 005459          107 GKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSD-GSLYSISWKGEFYGAFELVHSSNDSSVAALSHHF  185 (696)
Q Consensus       107 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~-g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s  185 (696)
                                      -.+..+.+....-.++..++..++++... |.|.++....+  +....        .+..+.+ 
T Consensus        81 ----------------ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d--G~l~~--------~v~~~~h-  133 (346)
T COG2706          81 ----------------LNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD--GSLQP--------VVQVVKH-  133 (346)
T ss_pred             ----------------eeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccC--Ccccc--------ceeeeec-
Confidence                            11111222221223556667777777665 56665544322  11100        0000000 


Q ss_pred             CCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEee-ccCCceeeeeeeccee-------cCCC
Q 005459          186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKIDKE-------LGSG  257 (696)
Q Consensus       186 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~-~d~~~~~~~~~~~~~~-------~~~~  257 (696)
                                         .+.....+.   ...-..++.++|||+++++.. ....+.+++...++..       ..-.
T Consensus       134 -------------------~g~~p~~rQ---~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~  191 (346)
T COG2706         134 -------------------TGSGPHERQ---ESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA  191 (346)
T ss_pred             -------------------CCCCCCccc---cCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCC
Confidence                               000000000   000012355889998877654 2233556665544221       1113


Q ss_pred             CeEEEEEcCCCcEEEEEec-CCeEEEEEccCCCceeeEEeecc-CCCCCCCCCCeEEEEECCCCCeEEEEEc-CCcEEEE
Q 005459          258 DAVCASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYD-WGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVW  334 (696)
Q Consensus       258 ~~v~v~~sp~~~~la~g~~-dg~v~vw~~~~~~~~~~~~~~~~-~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW  334 (696)
                      ++-.++|+|++++.-+-++ +++|.+|..+.....+..++... +|....-......|..+|||++|.++-+ ...|.++
T Consensus       192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f  271 (346)
T COG2706         192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF  271 (346)
T ss_pred             CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            4445999999998877665 89999999987433333333211 1211123456788999999999988754 2367777


Q ss_pred             Ecc
Q 005459          335 SVS  337 (696)
Q Consensus       335 ~~~  337 (696)
                      .+.
T Consensus       272 ~V~  274 (346)
T COG2706         272 SVD  274 (346)
T ss_pred             EEc
Confidence            764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.52  E-value=0.0001  Score=79.58  Aligned_cols=221  Identities=13%  Similarity=0.112  Sum_probs=133.3

Q ss_pred             HhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCC-CCCCCceeeeeeEEEeeeccccccceeEEEeeeCC
Q 005459           64 VQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGG-KQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN  142 (696)
Q Consensus        64 l~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~  142 (696)
                      +..++...+++|...+.+||+++.||.|++-++.+........+ ..+.         .+.....++++.++|..+..+.
T Consensus        11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~s---------nLsmNQtLeGH~~sV~vvTWNe   81 (1189)
T KOG2041|consen   11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAAS---------NLSMNQTLEGHNASVMVVTWNE   81 (1189)
T ss_pred             CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccccccc---------ccchhhhhccCcceEEEEEecc
Confidence            34566777999999999999999999999999986553221111 0111         2233445677888887776654


Q ss_pred             C--eEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCc
Q 005459          143 K--HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM  220 (696)
Q Consensus       143 ~--~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  220 (696)
                      .  .+-....+|.|.+|-.-...-...                                  .....+++.|.+|.|..+.
T Consensus        82 ~~QKLTtSDt~GlIiVWmlykgsW~EE----------------------------------MiNnRnKSvV~SmsWn~dG  127 (1189)
T KOG2041|consen   82 NNQKLTTSDTSGLIIVWMLYKGSWCEE----------------------------------MINNRNKSVVVSMSWNLDG  127 (1189)
T ss_pred             ccccccccCCCceEEEEeeecccHHHH----------------------------------HhhCcCccEEEEEEEcCCC
Confidence            3  333344456665542111100000                                  1122456779999999888


Q ss_pred             ceEEEEEeCCcEEEEeeccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCce---e-eEEe
Q 005459          221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASL---I-RTVS  296 (696)
Q Consensus       221 ~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~---~-~~~~  296 (696)
                      ...+.+..||.+++- +-|| -++|.-.    +.+ .....+.|++|.+.+..+-.+|.+.+||...+-..   + ....
T Consensus       128 ~kIcIvYeDGavIVG-svdG-NRIwgKe----Lkg-~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn  200 (1189)
T KOG2041|consen  128 TKICIVYEDGAVIVG-SVDG-NRIWGKE----LKG-QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVN  200 (1189)
T ss_pred             cEEEEEEccCCEEEE-eecc-ceecchh----cch-heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEe
Confidence            888888899987663 3333 3556532    222 12234889999999999999999999997642110   0 0011


Q ss_pred             eccCCCCCCCCCCeEEEEEC--------CCCCeEEEEEcCCcEEEEEc
Q 005459          297 LYDWGYSMDDTGPVSCIAWT--------PDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       297 ~~~~~~~~~h~g~V~~l~~s--------pdg~~lasg~~Dg~v~vW~~  336 (696)
                      +..  ......-.+..+.|.        ||--+||++..+|.+.+-.-
T Consensus       201 ~tg--~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~  246 (1189)
T KOG2041|consen  201 GTG--IFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS  246 (1189)
T ss_pred             eee--eecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence            100  000111225555553        57789999999988776643

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.47  E-value=3.6e-07  Score=62.88  Aligned_cols=38  Identities=29%  Similarity=0.619  Sum_probs=35.2

Q ss_pred             ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459          290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS  335 (696)
Q Consensus       290 ~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~  335 (696)
                      ++++++++        |+++|++|+|+|+++.|++|+.|+.|++||
T Consensus         2 ~~~~~~~~--------h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRG--------HSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEES--------SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcC--------CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45677888        999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.45  E-value=0.00073  Score=70.56  Aligned_cols=277  Identities=13%  Similarity=0.067  Sum_probs=150.8

Q ss_pred             CeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec----------CcEEEEEEEEecCcccccCCCC
Q 005459           40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----------SLYLHIFKVQITEKSIQIGGKQ  109 (696)
Q Consensus        40 ~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~----------dg~l~l~~l~~~~~~~~~~~~~  109 (696)
                      ++|.+-|.. ....++.+.-      .+.+.. + +||||+.|.++.+          +..|.+||+++.+....+....
T Consensus        27 ~~v~ViD~~-~~~v~g~i~~------G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~   97 (352)
T TIGR02658        27 TQVYTIDGE-AGRVLGMTDG------GFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE   97 (352)
T ss_pred             ceEEEEECC-CCEEEEEEEc------cCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence            789999986 5555554431      112222 3 9999999999877          6889999998765321111001


Q ss_pred             CCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEe-c-CCcEEEEecCCccccceeeccCCCCCcccccccccCC
Q 005459          110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-S-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPS  187 (696)
Q Consensus       110 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t-~-~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~  187 (696)
                      .+           +.   ..+.......+++|++.+++.. + +..+.+++.......              ..++. ++
T Consensus        98 ~p-----------~~---~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv--------------~ei~v-p~  148 (352)
T TIGR02658        98 GP-----------RF---LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFV--------------RMMDV-PD  148 (352)
T ss_pred             Cc-----------hh---hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEE--------------EEEeC-CC
Confidence            00           00   0111223457788899888875 3 566666654432211              11111 11


Q ss_pred             CCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeec-cCCceeeeeeecceecCCCCeEE--EEE
Q 005459          188 NGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKELGSGDAVC--ASI  264 (696)
Q Consensus       188 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~v~--v~~  264 (696)
                      +.                        ..|...-..+.....||+.+..+.. ++....-+   .+...+-.+.+.  -.|
T Consensus       149 ~~------------------------~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~---~~vf~~~~~~v~~rP~~  201 (352)
T TIGR02658       149 CY------------------------HIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP---TEVFHPEDEYLINHPAY  201 (352)
T ss_pred             Cc------------------------EEEEecCCccEEEeecCceEEEEecCCCceEEee---eeeecCCccccccCCce
Confidence            10                        0111112223345577776665443 22221111   000001011111  144


Q ss_pred             cC-CCcEEEEEecCCeEEEEEccCCC----ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE----------cCC
Q 005459          265 AP-EQQILAVGTRRGVVELYDLAESA----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW----------KSR  329 (696)
Q Consensus       265 sp-~~~~la~g~~dg~v~vw~~~~~~----~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~----------~Dg  329 (696)
                      ++ +++++-+..+ |+|.+-|+....    ..+..+........ -..+...-++++|||+.+.+..          ..+
T Consensus       202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~-wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~  279 (352)
T TIGR02658       202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADG-WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR  279 (352)
T ss_pred             EcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccc-cCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence            56 8888877776 999999965421    11222211000000 1345556699999999998853          124


Q ss_pred             cEEEEEccCCeeEEEeecccccceecccccCCCCCCcc-cee--cce--eeEEEcCCCceEEEEe
Q 005459          330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLM--SGT--SMMQWDEYGYRLYAIE  389 (696)
Q Consensus       330 ~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~-~l~--sg~--~~~~W~~~~~~l~~~~  389 (696)
                      .|.++|+.+++.+..+.-.  ..+..++++||+    + .+.  .+.  .+.+.|..+++.+...
T Consensus       280 ~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dg----kp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       280 FLFVVDAKTGKRLRKIELG--HEIDSINVSQDA----KPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEEEECCCCeEEEEEeCC--CceeeEEECCCC----CeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            7999999999999888753  357889999998    5 222  211  4666777777666654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.44  E-value=1.5e-05  Score=87.58  Aligned_cols=148  Identities=8%  Similarity=0.108  Sum_probs=85.4

Q ss_pred             EEEEEeCCcEEEEeec-cCC--ceeeeeeecce--ecCCCCeE-EEEEcCCCcEEEE-EecCCe--EEEEEccCCCceee
Q 005459          223 LFVLYSNGQLMSCSVS-KKG--LKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAV-GTRRGV--VELYDLAESASLIR  293 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~-d~~--~~~~~~~~~~~--~~~~~~~v-~v~~sp~~~~la~-g~~dg~--v~vw~~~~~~~~~~  293 (696)
                      ...++|||+.++..+. ++.  +.+++...++.  +....... ..+|+|||+.||. ...+|.  |.++|+++ ++ ..
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t-g~-~~  299 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT-KA-LT  299 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC-CC-eE
Confidence            3568899987776653 333  45566554432  21112222 3799999998875 566775  55666654 33 33


Q ss_pred             EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CCc--EEEEEccCCeeEEEeecccccceecccccCCCCCCcccee
Q 005459          294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRG--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM  370 (696)
Q Consensus       294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg~--v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~  370 (696)
                      .+..        +.+.....+|||||+.|+..+. ++.  |.++|+.+++.. .+... ......++|+|++    +.++
T Consensus       300 ~lt~--------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~-g~~~~~~~~SpDG----~~l~  365 (448)
T PRK04792        300 RITR--------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFE-GEQNLGGSITPDG----RSMI  365 (448)
T ss_pred             ECcc--------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecC-CCCCcCeeECCCC----CEEE
Confidence            3443        4555678899999998876654 344  555577666532 23211 1123457889998    4443


Q ss_pred             cce------eeEEEcCCCceEE
Q 005459          371 SGT------SMMQWDEYGYRLY  386 (696)
Q Consensus       371 sg~------~~~~W~~~~~~l~  386 (696)
                      ...      .+..+++++++..
T Consensus       366 ~~~~~~g~~~I~~~dl~~g~~~  387 (448)
T PRK04792        366 MVNRTNGKFNIARQDLETGAMQ  387 (448)
T ss_pred             EEEecCCceEEEEEECCCCCeE
Confidence            211      3445566665543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.42  E-value=0.00044  Score=71.63  Aligned_cols=125  Identities=12%  Similarity=0.220  Sum_probs=81.8

Q ss_pred             EeCCcEEEEeeccC-Cceeeeeeecce--e-cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC
Q 005459          227 YSNGQLMSCSVSKK-GLKLAEFIKIDK--E-LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY  302 (696)
Q Consensus       227 s~dG~~~~~~~~d~-~~~~~~~~~~~~--~-~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~  302 (696)
                      ..|+...+.+..|+ .+-+.+...++.  . .+....-.+..+|+|+.++++-....+-+.|+++ +. .+.+...    
T Consensus       368 ~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-gn-v~~idkS----  441 (668)
T COG4946         368 QVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GN-VRLIDKS----  441 (668)
T ss_pred             ccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CC-eeEeccc----
Confidence            33444444444444 334455444431  1 2223333499999999999999999999999987 43 3333331    


Q ss_pred             CCCCCCCeEEEEECCCCCeEEEEEcC----CcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459          303 SMDDTGPVSCIAWTPDNSAFAVGWKS----RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       303 ~~~h~g~V~~l~~spdg~~lasg~~D----g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                         .-+-|+...|+|+++.+|-+.-+    ..|+++|+.+++....-...  +.=.+++|+|++
T Consensus       442 ---~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t--a~DfsPaFD~d~  500 (668)
T COG4946         442 ---EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT--AYDFSPAFDPDG  500 (668)
T ss_pred             ---ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc--ccccCcccCCCC
Confidence               45779999999999999976554    47999999998765433221  123567888877

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=7.7e-06  Score=82.45  Aligned_cols=109  Identities=13%  Similarity=0.208  Sum_probs=88.2

Q ss_pred             EEEeC--CcEEEEeeccCCceeeeeeeccee----cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeE-Ee
Q 005459          225 VLYSN--GQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRT-VS  296 (696)
Q Consensus       225 ~~s~d--G~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~-~~  296 (696)
                      .|.+.  .+.++++..-+.++++|.....+-    ..-+.++. +..-|++++|.+|..-|.+..||.+. +.+... ++
T Consensus       209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~-~kl~g~~~k  287 (412)
T KOG3881|consen  209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG-GKLLGCGLK  287 (412)
T ss_pred             eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccC-ceeeccccC
Confidence            35555  677888888888999997754321    22345555 89999999999999999999999998 555544 66


Q ss_pred             eccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeE
Q 005459          297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM  342 (696)
Q Consensus       297 ~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~  342 (696)
                      +        -+|.|++|...|.+.+||+++-|+.|||+|+.+.+++
T Consensus       288 g--------~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  288 G--------ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             C--------ccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence            6        7999999999999999999999999999999997665

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.41  E-value=2.6e-05  Score=77.51  Aligned_cols=224  Identities=13%  Similarity=0.130  Sum_probs=149.8

Q ss_pred             EEeCCcEEEEeeccCCceeeeee-ecceecC--C---CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCc---eeeEEe
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFI-KIDKELG--S---GDAVCASIAPEQQILAVGTRRGVVELYDLAESAS---LIRTVS  296 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~-~~~~~~~--~---~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~---~~~~~~  296 (696)
                      .-|-..-+++.+.|.++++|--. .++.|+.  |   ....+++++++.+.|.+|-.+|++.-+.+...-+   ..+...
T Consensus        32 l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~  111 (404)
T KOG1409|consen   32 LIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYL  111 (404)
T ss_pred             eccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhh
Confidence            34555557777889999998654 3444421  2   3444589999999999999999999988765222   122223


Q ss_pred             eccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecc----
Q 005459          297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG----  372 (696)
Q Consensus       297 ~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg----  372 (696)
                      .        |.++|..+-|+-.-+.+++.+.|..+.---.+.+.-+   .++   ...+.+-.++-+  .....-|    
T Consensus       112 ~--------h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~l---g~Y---~~~~~~t~~~~d--~~~~fvGd~~g  175 (404)
T KOG1409|consen  112 A--------HQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRL---GGY---NFETPASALQFD--ALYAFVGDHSG  175 (404)
T ss_pred             h--------hhcceeeEEecCCceeEEEeccccceEEEeeccCCcc---cce---EeeccCCCCcee--eEEEEeccccc
Confidence            3        9999999999999999999999987743323332211   111   011111101000  0000111    


Q ss_pred             -eeeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee
Q 005459          373 -TSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY  448 (696)
Q Consensus       373 -~~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  448 (696)
                       ++..--...+-.++....+|.+.+..+..   .+.+.++..|..+.+|++.-....                   ....
T Consensus       176 qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-------------------~~el  236 (404)
T KOG1409|consen  176 QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-------------------AYEL  236 (404)
T ss_pred             ceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-------------------eeee
Confidence             13444455666788888899999866665   567889999999999998655442                   2344


Q ss_pred             ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       449 ~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                      .+|+..|+.+..-+--+.+.+++.||.+ +|+++..+
T Consensus       237 ~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  237 QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             ccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence            5788899999888889999999999999 99997664

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.40  E-value=2.3e-05  Score=86.02  Aligned_cols=149  Identities=12%  Similarity=0.076  Sum_probs=88.1

Q ss_pred             EEEEEeCCcEEEEeecc-C--Cceeeeeeecce--ecCCCCeE-EEEEcCCCcEEEEE-ecCC--eEEEEEccCCCceee
Q 005459          223 LFVLYSNGQLMSCSVSK-K--GLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAVG-TRRG--VVELYDLAESASLIR  293 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~d-~--~~~~~~~~~~~~--~~~~~~~v-~v~~sp~~~~la~g-~~dg--~v~vw~~~~~~~~~~  293 (696)
                      ...++|||+.++..+.+ +  .+.+++...++.  +....... ..+|||||+.||.. ..+|  .|.+||+++ +. ..
T Consensus       203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~-~~-~~  280 (430)
T PRK00178        203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS-RQ-LS  280 (430)
T ss_pred             eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC-CC-eE
Confidence            35688999887766533 2  345566654432  22222223 38999999988854 4455  577778775 33 33


Q ss_pred             EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CC--cEEEEEccCCeeEEEeecccccceecccccCCCCCCcccee
Q 005459          294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM  370 (696)
Q Consensus       294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg--~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~  370 (696)
                      .+..        +.+......|+|||+.|+..+. ++  .|.++++.++... .+... ......+.|+|++    +.++
T Consensus       281 ~lt~--------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~-~~~~~~~~~Spdg----~~i~  346 (430)
T PRK00178        281 RVTN--------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFV-GNYNARPRLSADG----KTLV  346 (430)
T ss_pred             Eccc--------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC-CCCccceEECCCC----CEEE
Confidence            3443        4555677899999998876654 33  4666777666532 22211 1223456788987    4443


Q ss_pred             cce------eeEEEcCCCceEEE
Q 005459          371 SGT------SMMQWDEYGYRLYA  387 (696)
Q Consensus       371 sg~------~~~~W~~~~~~l~~  387 (696)
                      -..      .+..|++.+++...
T Consensus       347 ~~~~~~~~~~l~~~dl~tg~~~~  369 (430)
T PRK00178        347 MVHRQDGNFHVAAQDLQRGSVRI  369 (430)
T ss_pred             EEEccCCceEEEEEECCCCCEEE
Confidence            211      45667777665433

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.39  E-value=0.00034  Score=73.77  Aligned_cols=303  Identities=17%  Similarity=0.243  Sum_probs=169.8

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEEEEEcCCCcEEEEEec-----------CCeEEEEEccCCCc
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTR-----------RGVVELYDLAESAS  290 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~v~~sp~~~~la~g~~-----------dg~v~vw~~~~~~~  290 (696)
                      +.+||-|.++++ .....+.+|.+..-.+.  ..|.+.-.+.|||..++|++=+.           ...++|||+.+ +.
T Consensus       216 v~wSP~GTYL~t-~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t-G~  293 (698)
T KOG2314|consen  216 VRWSPKGTYLVT-FHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT-GL  293 (698)
T ss_pred             EEecCCceEEEE-EeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc-cc
Confidence            457888887765 34445778887654433  35666666999999999998652           25799999998 77


Q ss_pred             eeeEEeeccCCCCCCCCCCe-EEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce
Q 005459          291 LIRTVSLYDWGYSMDDTGPV-SCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL  369 (696)
Q Consensus       291 ~~~~~~~~~~~~~~~h~g~V-~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l  369 (696)
                      ..+.+...+      ..-.+ .-..||.|++++|--.. .+|.|++...-.++- .+.-.-+.|....|+|.+    ..+
T Consensus       294 lkrsF~~~~------~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld-~Kslki~gIr~FswsP~~----~ll  361 (698)
T KOG2314|consen  294 LKRSFPVIK------SPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLD-KKSLKISGIRDFSWSPTS----NLL  361 (698)
T ss_pred             hhcceeccC------CCccccceEEeccCCceeEEecc-ceEEEEecCceeeec-ccccCCccccCcccCCCc----ceE
Confidence            777776521      11122 34689999999998777 689999887643321 111112345556667765    333


Q ss_pred             ecceeeEEEcCCCceEEEEecCCcceE--EEEecceeeeeccC----CCCceeeeeeecCCeEEEEecCCCCc-------
Q 005459          370 MSGTSMMQWDEYGYRLYAIEEGSSERV--LIFSFGKCCLNRGV----SGMTYARQVIYGEDRLLVVQSEDTDE-------  436 (696)
Q Consensus       370 ~sg~~~~~W~~~~~~l~~~~~~~~~~v--~~~~~~~~~~s~~~----d~~~~~w~~~~~~~~~~~~~~~~~~~-------  436 (696)
                            ..|.+++...       ..++  ..+.-.+.+-+.+.    |.. ..|.  ...+.+.++.......       
T Consensus       362 ------AYwtpe~~~~-------parvtL~evPs~~~iRt~nlfnVsDck-LhWQ--k~gdyLcvkvdR~tK~~~~g~f~  425 (698)
T KOG2314|consen  362 ------AYWTPETNNI-------PARVTLMEVPSKREIRTKNLFNVSDCK-LHWQ--KSGDYLCVKVDRHTKSKVKGQFS  425 (698)
T ss_pred             ------EEEcccccCC-------cceEEEEecCccceeeeccceeeeccE-EEec--cCCcEEEEEEEeeccccccceEe
Confidence                  3676655322       1112  11111222211110    000 0121  1222232222111100       


Q ss_pred             ----ceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCC---ccE-EEEcc--CCceEecCCccceeeeEEEeEeee-
Q 005459          437 ----LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH---GLI-LYDIR--QKKWRVFGDITQEQKIQSKGLLWL-  505 (696)
Q Consensus       437 ----~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~d---G~i-~w~~~--sg~w~~f~~~~~e~~~~v~~~~w~-  505 (696)
                          .......+|-.-..-..+|-..+|-|.|..+|+-+..   .++ .|.++  .++|++.....   ...+..+-|. 
T Consensus       426 n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d---k~~~N~vfwsP  502 (698)
T KOG2314|consen  426 NLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD---KKFANTVFWSP  502 (698)
T ss_pred             eEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc---ccccceEEEcC
Confidence                0112223555555556788999999999887765432   466 88876  44565533211   1235677886 


Q ss_pred             -CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEEEEEc
Q 005459          506 -GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYR  561 (696)
Q Consensus       506 -~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~  561 (696)
                       +.++|+++..  +..+.+.||+.+.-+...+.+.+-....-+--+|.|.|+++.++
T Consensus       503 kG~fvvva~l~--s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss  557 (698)
T KOG2314|consen  503 KGRFVVVAALV--SRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS  557 (698)
T ss_pred             CCcEEEEEEec--ccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence             6778887554  46688999988611111122222122224777899999998543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.39  E-value=0.00056  Score=70.84  Aligned_cols=98  Identities=19%  Similarity=0.267  Sum_probs=74.1

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCC-eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRG-VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL  331 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg-~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v  331 (696)
                      .+|...|. ..+.-+.+-++.|..|| .+-|||.+.  ...+.+..        .-|.|.+|+.+|||+.++++-....+
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~--~e~kr~e~--------~lg~I~av~vs~dGK~~vvaNdr~el  425 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG--GEVKRIEK--------DLGNIEAVKVSPDGKKVVVANDRFEL  425 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCC--ceEEEeeC--------CccceEEEEEcCCCcEEEEEcCceEE
Confidence            45666677 88888888999999999 999999885  44455555        57889999999999999999988899


Q ss_pred             EEEEccCCeeEEEeecccccceecccccCCC
Q 005459          332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      .+.|+.++... .+......-|+...++|++
T Consensus       426 ~vididngnv~-~idkS~~~lItdf~~~~ns  455 (668)
T COG4946         426 WVIDIDNGNVR-LIDKSEYGLITDFDWHPNS  455 (668)
T ss_pred             EEEEecCCCee-EecccccceeEEEEEcCCc
Confidence            99999887532 2222213345666666665

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.33  E-value=0.00023  Score=69.74  Aligned_cols=231  Identities=15%  Similarity=0.171  Sum_probs=116.0

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeee------ccee--cC-CCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeE
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIK------IDKE--LG-SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRT  294 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~------~~~~--~~-~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~  294 (696)
                      ++.++||++++.. +|..+.+-...+      +++.  .+ +-..-.++||||+.+||.+...|+|++||+..  ..+..
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g--~~lf~   79 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG--SELFV   79 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc--ceeEE
Confidence            3467889888753 343343332211      1111  11 12233499999999999999999999999873  44444


Q ss_pred             EeeccCCCCCCCCCCeEEEEECCC------CCeEEEEEcCCcEEEEEccC-----CeeEEEee--cccccceecccccCC
Q 005459          295 VSLYDWGYSMDDTGPVSCIAWTPD------NSAFAVGWKSRGLTVWSVSG-----CRLMSTIR--QISLSSISSPIVKPN  361 (696)
Q Consensus       295 ~~~~~~~~~~~h~g~V~~l~~spd------g~~lasg~~Dg~v~vW~~~~-----~~~~~~l~--~~~~~~v~~~~~sp~  361 (696)
                      +....- ....-..+|..|.|-+-      ..-|.+-..+|.++=+-+..     .+..+++.  .|....|+++     
T Consensus        80 I~p~~~-~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~-----  153 (282)
T PF15492_consen   80 IPPAMS-FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSA-----  153 (282)
T ss_pred             cCcccc-cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEE-----
Confidence            544210 11123456777777542      22445555557777666532     22222222  1222334444     


Q ss_pred             CCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCc--c--
Q 005459          362 QDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE--L--  437 (696)
Q Consensus       362 ~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~--~--  437 (696)
                                     +|+++.. |+.+...+...       + -.+...+.-+..|-++.+..-.......+...  .  
T Consensus       154 ---------------vy~p~h~-LLlVgG~~~~~-------~-~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~  209 (282)
T PF15492_consen  154 ---------------VYHPKHR-LLLVGGCEQNQ-------D-GMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSK  209 (282)
T ss_pred             ---------------EEcCCCC-EEEEeccCCCC-------C-ccccccccCceEEEEcCCCCcEEEccccCcccccccc
Confidence                           4444332 22221111100       0 00111122233455554443322222111110  0  


Q ss_pred             eeEEeecCe--ee---ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC----CceEe
Q 005459          438 KILHLNLPV--SY---ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ----KKWRV  487 (696)
Q Consensus       438 ~w~~~~~~~--~~---~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s----g~w~~  487 (696)
                      .+...+++.  -|   .....-|..+.+||||+.||+..-+|.+ +|++-+    ++|+.
T Consensus       210 ~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  210 RRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             ccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence            011111121  11   1224569999999999999999999999 999965    45654

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.33  E-value=9.3e-05  Score=73.64  Aligned_cols=240  Identities=15%  Similarity=0.246  Sum_probs=135.8

Q ss_pred             cccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEE
Q 005459           69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG  148 (696)
Q Consensus        69 ~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~  148 (696)
                      .+.++..-|-..-+...+.|.++|+|-=.-....            -+++    ...++   ...++......-.+|+++
T Consensus        26 ~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~------------wpsI----~~~mP---~~~~~~~y~~e~~~L~vg   86 (404)
T KOG1409|consen   26 DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY------------WPSI----YHYMP---SPCSAMEYVSESRRLYVG   86 (404)
T ss_pred             hhhhheeccCCCCeEEccccceeeeEEecccccc------------Cchh----hhhCC---CCceEeeeeccceEEEEE
Confidence            4556666777778889999999999954322111            0111    00000   011222333345678999


Q ss_pred             ecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEe
Q 005459          149 LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS  228 (696)
Q Consensus       149 t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~  228 (696)
                      -.+|.+..++.....+....+                                .....+...+..+-          |+-
T Consensus        87 ~~ngtvtefs~sedfnkm~~~--------------------------------r~~~~h~~~v~~~i----------f~~  124 (404)
T KOG1409|consen   87 QDNGTVTEFALSEDFNKMTFL--------------------------------KDYLAHQARVSAIV----------FSL  124 (404)
T ss_pred             EecceEEEEEhhhhhhhcchh--------------------------------hhhhhhhcceeeEE----------ecC
Confidence            999999887766554432211                                01122333343333          333


Q ss_pred             CCcEEEEeeccCCceeeeeeecceecCCCCeEEEEEcCCC--cEEEEEecCCeEEEEEccCC-CceeeEEeeccCCCCCC
Q 005459          229 NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQ--QILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMD  305 (696)
Q Consensus       229 dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~--~~la~g~~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~  305 (696)
                      .-..+++++.|+.+ .|......+..||-.-.+.+..++.  .+.-+|-..|.|.+-.+... ..++.++.+        
T Consensus       125 ~~e~V~s~~~dk~~-~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~--------  195 (404)
T KOG1409|consen  125 THEWVLSTGKDKQF-AWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNG--------  195 (404)
T ss_pred             CceeEEEeccccce-EEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcC--------
Confidence            33444444444433 2433222121232222221111111  14445666677766665432 356777777        


Q ss_pred             CCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee-EEEeecccccceecccccCCCCCCccceecce---eeEEEcCC
Q 005459          306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL-MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY  381 (696)
Q Consensus       306 h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~-~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~  381 (696)
                      |.+++.+++|.|....|++|..|..+.+||+.+++- .+.+.+| .+.|..+..-+.-    ..+.+..   .+++|+..
T Consensus       196 h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh-~~kV~~l~~~~~t----~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  196 HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH-NDKVQALSYAQHT----RQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccc-hhhhhhhhhhhhh----eeeeeccCCCeEEEEecc
Confidence            999999999999999999999999999999988764 4455566 6667766554433    3333332   78889876


Q ss_pred             Cc
Q 005459          382 GY  383 (696)
Q Consensus       382 ~~  383 (696)
                      ..
T Consensus       271 ~~  272 (404)
T KOG1409|consen  271 VK  272 (404)
T ss_pred             ce
Confidence            54

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.32  E-value=6.2e-05  Score=72.40  Aligned_cols=199  Identities=11%  Similarity=0.035  Sum_probs=118.1

Q ss_pred             cEEEEcCCC-----cEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeE
Q 005459           71 LQAVWSPDT-----KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM  145 (696)
Q Consensus        71 ~~v~wsPDg-----~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~l  145 (696)
                      ..+.|.|-+     -+||.+++.|.+.+|...+.....+...     +...++++              +.-.+-....+
T Consensus        71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd-----~snn~v~~--------------~~r~cd~~~~~  131 (344)
T KOG4532|consen   71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCD-----VSNNDVTL--------------VKRYCDLKFPL  131 (344)
T ss_pred             ecccccchHhhccccEEEeccccceeeeecccCcccceeeec-----ccccchhh--------------hhhhcccccce
Confidence            345666643     3789999999999999876543222100     00011100              11111224567


Q ss_pred             EEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCc-ceEE
Q 005459          146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLLF  224 (696)
Q Consensus       146 lv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~  224 (696)
                      .+++.|.+++.+..++...+..                                               .|.+.+ ...+
T Consensus       132 ~i~sndht~k~~~~~~~s~~~~-----------------------------------------------~h~~~~~~ns~  164 (344)
T KOG4532|consen  132 NIASNDHTGKTMVVSGDSNKFA-----------------------------------------------VHNQNLTQNSL  164 (344)
T ss_pred             eeccCCcceeEEEEecCcccce-----------------------------------------------eeccccceeee
Confidence            8888888888776665443311                                               011111 1224


Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeec-cee------cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKI-DKE------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL  297 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~-~~~------~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~  297 (696)
                      .+++|++..++.+....+-.+.+... +.+      .......|.+||.....+|++.+||++.|||++..+.+..+...
T Consensus       165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss  244 (344)
T KOG4532|consen  165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS  244 (344)
T ss_pred             EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc
Confidence            56777777776665555544443321 111      22345677999999999999999999999999974444443333


Q ss_pred             ccCCCCCCCCCCeEEEEECCCCC---eEEEEEcCCcEEEEEccCCe
Q 005459          298 YDWGYSMDDTGPVSCIAWTPDNS---AFAVGWKSRGLTVWSVSGCR  340 (696)
Q Consensus       298 ~~~~~~~~h~g~V~~l~~spdg~---~lasg~~Dg~v~vW~~~~~~  340 (696)
                      .    .+.|.|+++.+.|||-|-   ++.+-.. +-+.|-|+.+++
T Consensus       245 t----rp~hnGa~R~c~Fsl~g~lDLLf~sEhf-s~~hv~D~R~~~  285 (344)
T KOG4532|consen  245 T----RPHHNGAFRVCRFSLYGLLDLLFISEHF-SRVHVVDTRNYV  285 (344)
T ss_pred             c----CCCCCCceEEEEecCCCcceEEEEecCc-ceEEEEEcccCc
Confidence            1    123999999999998554   3344333 567777776654

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.30  E-value=1.7e-06  Score=93.24  Aligned_cols=198  Identities=11%  Similarity=0.042  Sum_probs=133.5

Q ss_pred             CCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-----cCCCCeEEEEEcCCCcEEEEEecCCeE
Q 005459          206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVCASIAPEQQILAVGTRRGVV  280 (696)
Q Consensus       206 ~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~v~~sp~~~~la~g~~dg~v  280 (696)
                      ++...|++|.|.+.-         -.++++++-|..+..||...+..-     .-|..+..|.||....-+...+....|
T Consensus       112 ghsraitd~n~~~q~---------pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i  182 (1081)
T KOG0309|consen  112 GHSRAITDINFNPQH---------PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI  182 (1081)
T ss_pred             cCccceeccccCCCC---------CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence            556678887765532         235667777888889998776432     235667779999865545455667789


Q ss_pred             EEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceeccccc
Q 005459          281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK  359 (696)
Q Consensus       281 ~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~s  359 (696)
                      ++||.+.+..++..+++        |...|+.++|.. --..+.+.+.||+|+.||.........-..-....+.-..+-
T Consensus       183 ~vwd~r~gs~pl~s~K~--------~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~  254 (1081)
T KOG0309|consen  183 FVWDLRKGSTPLCSLKG--------HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL  254 (1081)
T ss_pred             EEEeccCCCcceEEecc--------cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence            99999987788888888        999999999976 344678899999999999854322111111113445666667


Q ss_pred             CCCCCCccceecce----------eeEEEcCC-CceEEEEecCCcceEEEEec-------------ceeeeeccCCCCce
Q 005459          360 PNQDCKYEPLMSGT----------SMMQWDEY-GYRLYAIEEGSSERVLIFSF-------------GKCCLNRGVSGMTY  415 (696)
Q Consensus       360 p~~~~~~~~l~sg~----------~~~~W~~~-~~~l~~~~~~~~~~v~~~~~-------------~~~~~s~~~d~~~~  415 (696)
                      |-++.-.-+..-|.          ....|+.. ..+.+..+.||++.|..|-.             .-.++|-+.|.+++
T Consensus       255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr  334 (1081)
T KOG0309|consen  255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR  334 (1081)
T ss_pred             ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence            76642221112222          33446553 45678889999999865554             12589999999999


Q ss_pred             eeeee
Q 005459          416 ARQVI  420 (696)
Q Consensus       416 ~w~~~  420 (696)
                      +|.+.
T Consensus       335 lWpI~  339 (1081)
T KOG0309|consen  335 LWPID  339 (1081)
T ss_pred             eeecc
Confidence            99875

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=0.00037  Score=73.52  Aligned_cols=306  Identities=13%  Similarity=0.117  Sum_probs=152.2

Q ss_pred             CceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec-----------Cc
Q 005459           21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS-----------SL   89 (696)
Q Consensus        21 ~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~-----------dg   89 (696)
                      .+-.+.+||-|.+|++.....|.+|-..       .+.|..+-  -|-.+..+.|||.-++|++=+.           ..
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~GI~lWGG~-------~f~r~~RF--~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~  282 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQGIALWGGE-------SFDRIQRF--YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ  282 (698)
T ss_pred             eeeeEEecCCceEEEEEeccceeeecCc-------cHHHHHhc--cCCCceeeecCCccceEEEecCCccccCcccCCCc
Confidence            3556899999999999999999999763       23332221  1344677999999999999542           14


Q ss_pred             EEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceee
Q 005459           90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFEL  169 (696)
Q Consensus        90 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~  169 (696)
                      .++|||+.++........... ....|                 ++.-.+.|+++++--+.+ .|.++.-.  .-.-  +
T Consensus       283 ~l~IWDI~tG~lkrsF~~~~~-~~~~W-----------------P~frWS~DdKy~Arm~~~-sisIyEtp--sf~l--l  339 (698)
T KOG2314|consen  283 QLIIWDIATGLLKRSFPVIKS-PYLKW-----------------PIFRWSHDDKYFARMTGN-SISIYETP--SFML--L  339 (698)
T ss_pred             eEEEEEccccchhcceeccCC-Ccccc-----------------ceEEeccCCceeEEeccc-eEEEEecC--ceee--e
Confidence            689999998875432221111 11111                 122233344444433332 23332111  1000  0


Q ss_pred             ccCCCCCcccccccccCCCCc-cccc-CCCc-cccCCc--CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCce-
Q 005459          170 VHSSNDSSVAALSHHFPSNGL-ASVD-TSGA-FVSDHK--FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-  243 (696)
Q Consensus       170 ~~~p~~~~~~~~~~~s~~~~l-~~~~-~~~~-~~~~~~--~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~-  243 (696)
                      +.++.....++...+++..++ +... ...+ ..+..+  .+....|+......-.+.-+-+-..|.++..-....+-. 
T Consensus       340 d~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~  419 (698)
T KOG2314|consen  340 DKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSK  419 (698)
T ss_pred             cccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccc
Confidence            112222223333333443331 1111 1000 000000  112222222111111122344556676665544322111 


Q ss_pred             ----eeeeeec----ce----ecCCCCeEE-EEEcCCCcEEEEEec---CCeEEEEEccCCCc---eeeEEeeccCCCCC
Q 005459          244 ----LAEFIKI----DK----ELGSGDAVC-ASIAPEQQILAVGTR---RGVVELYDLAESAS---LIRTVSLYDWGYSM  304 (696)
Q Consensus       244 ----~~~~~~~----~~----~~~~~~~v~-v~~sp~~~~la~g~~---dg~v~vw~~~~~~~---~~~~~~~~~~~~~~  304 (696)
                          ..+..-.    +.    ...-.+.+- .+|-|.|+.+|+-+.   ..++.+|.+.+...   ++..+.        
T Consensus       420 ~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--------  491 (698)
T KOG2314|consen  420 VKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--------  491 (698)
T ss_pred             ccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--------
Confidence                1111100    00    012234444 899999998887654   36899999884222   222222        


Q ss_pred             CCCCCeEEEEECCCCCeEEEE---EcCCcEEEEEccCCeeEEE-eecccccceecccccCCCCCCccceeccee
Q 005459          305 DDTGPVSCIAWTPDNSAFAVG---WKSRGLTVWSVSGCRLMST-IRQISLSSISSPIVKPNQDCKYEPLMSGTS  374 (696)
Q Consensus       305 ~h~g~V~~l~~spdg~~lasg---~~Dg~v~vW~~~~~~~~~~-l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~  374 (696)
                        ....+.+.|||.|+.++++   +..|.+..+|+.-..+..+ ...|  ...+.+.|+|.|    ++++++++
T Consensus       492 --k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh--~~at~veWDPtG----RYvvT~ss  557 (698)
T KOG2314|consen  492 --KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH--FAATEVEWDPTG----RYVVTSSS  557 (698)
T ss_pred             --ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc--cccccceECCCC----CEEEEeee
Confidence              2446889999999998876   4467888888764221111 1112  234556677777    66665553

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.26  E-value=0.00014  Score=78.99  Aligned_cols=104  Identities=9%  Similarity=0.028  Sum_probs=59.1

Q ss_pred             EEEeCCcEEEEeec-cCCce--eeeeeecce--ecCCCCeEEEEEcCCCcEEEEEecC---------CeEEEEEccCCCc
Q 005459          225 VLYSNGQLMSCSVS-KKGLK--LAEFIKIDK--ELGSGDAVCASIAPEQQILAVGTRR---------GVVELYDLAESAS  290 (696)
Q Consensus       225 ~~s~dG~~~~~~~~-d~~~~--~~~~~~~~~--~~~~~~~v~v~~sp~~~~la~g~~d---------g~v~vw~~~~~~~  290 (696)
                      .++|||+.++..++ .+...  +.+...++.  +..... ...+|||||+.||..+..         ..|.+.|+++ +.
T Consensus       283 ~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~  360 (419)
T PRK04043        283 NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY  360 (419)
T ss_pred             EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC
Confidence            47888876665554 33333  334433322  111111 125899999999887654         2567777765 33


Q ss_pred             eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC---cEEEEEccCCe
Q 005459          291 LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR---GLTVWSVSGCR  340 (696)
Q Consensus       291 ~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg---~v~vW~~~~~~  340 (696)
                       .+.+..        . +.....+|||||+.|+-...++   .+.+.++.+..
T Consensus       361 -~~~LT~--------~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~  403 (419)
T PRK04043        361 -IRRLTA--------N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK  403 (419)
T ss_pred             -eEECCC--------C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence             333433        1 2233588999999887665433   35566666643

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.17  E-value=0.00059  Score=74.68  Aligned_cols=117  Identities=16%  Similarity=0.204  Sum_probs=66.4

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeE-EEeEeee-CcE--E---------EEEEeecC
Q 005459          452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ-SKGLLWL-GKI--I---------VVCNYIDS  517 (696)
Q Consensus       452 ~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~-v~~~~w~-~~~--l---------v~~~~~~~  517 (696)
                      ..||+.+..|.-|+|+|+.-+|.-. +||+++.+  ++..  ....+. ++.|.|. ++.  +         ..+....-
T Consensus       521 espI~~irvS~~~~yLai~Fr~~plEiwd~kt~~--~lr~--mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv  596 (1062)
T KOG1912|consen  521 ESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLR--MLRL--MSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVV  596 (1062)
T ss_pred             cCcceeeeecccCceEEEEecccchHHHhhccch--HHHH--HhhcCCcEEEEeecccCCCCcccccchhhhhhhhceee
Confidence            5689999999999999999999999 99997653  2211  122333 4567776 110  0         00000000


Q ss_pred             CCeEEEEEeeCC--CC---Ccccee-EEeecCCccEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459          518 SNTYELLFYPRY--HL---DQSSLL-CRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL  572 (696)
Q Consensus       518 ~~~~~lr~y~~~--~l---~~~~~~-~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~  572 (696)
                      .++.+.++|...  .+   |..+.. ..+....+.+.|.-.+|.++++.-+|.+..|+...
T Consensus       597 ~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk~d~lv~GD~~GNl~~WDlg~  657 (1062)
T KOG1912|consen  597 LDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWKDDILVVGDVEGNLVVWDLGR  657 (1062)
T ss_pred             eccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhccCCeeEeecccCceeEEeccc
Confidence            122355666542  11   111100 01111112234555788999999999999999765

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.16  E-value=3.5e-05  Score=78.20  Aligned_cols=85  Identities=19%  Similarity=0.343  Sum_probs=70.3

Q ss_pred             ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459          253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL  331 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v  331 (696)
                      ..||-..+. ++|+||.+.|.++..|..|||=.... ...+..+-.       +|+.-|..++.-++ +.|+||+.|+++
T Consensus       147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~Iesfcl-------GH~eFVS~isl~~~-~~LlS~sGD~tl  217 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCL-------GHKEFVSTISLTDN-YLLLSGSGDKTL  217 (390)
T ss_pred             hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhcc-------ccHhheeeeeeccC-ceeeecCCCCcE
Confidence            478988888 99999999999999999999977665 333333332       49999999998765 669999999999


Q ss_pred             EEEEccCCeeEEEee
Q 005459          332 TVWSVSGCRLMSTIR  346 (696)
Q Consensus       332 ~vW~~~~~~~~~~l~  346 (696)
                      ++||...++++.++.
T Consensus       218 r~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  218 RLWDITSGKLLDTCD  232 (390)
T ss_pred             EEEecccCCcccccc
Confidence            999999998886654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.11  E-value=1.2e-05  Score=94.73  Aligned_cols=139  Identities=14%  Similarity=0.170  Sum_probs=98.3

Q ss_pred             EEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEe---cCCeEEEEEccCCCceeeEEeec
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGT---RRGVVELYDLAESASLIRTVSLY  298 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~---~dg~v~vw~~~~~~~~~~~~~~~  298 (696)
                      |+..|..+..+-.|+.+.+|... ++.   ++.|+.+.. ++|=.  .++|+++   .++.+.+||.-........-.. 
T Consensus      2259 f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~- 2334 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTC- 2334 (2439)
T ss_pred             hcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeee-
Confidence            44455555555556666667654 222   256777776 66654  6777764   4689999997653322221244 


Q ss_pred             cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---ee
Q 005459          299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM  375 (696)
Q Consensus       299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~  375 (696)
                             |.+.++++++-|.-+.|++|+++|.|++||+...++.++++.-          +     ..+++++|+   .+
T Consensus      2335 -------H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~----------~-----~~~~f~~~ss~g~i 2392 (2439)
T KOG1064|consen 2335 -------HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQAL----------D-----TREYFVTGSSEGNI 2392 (2439)
T ss_pred             -------cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhh----------h-----hhheeeccCcccce
Confidence                   9999999999999999999999999999999988887666541          1     127777776   89


Q ss_pred             EEEcCCCceEEEEec
Q 005459          376 MQWDEYGYRLYAIEE  390 (696)
Q Consensus       376 ~~W~~~~~~l~~~~~  390 (696)
                      ++|+.....++..+.
T Consensus      2393 kIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2393 KIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             EEEEccccchhhcCc
Confidence            999999887777664

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.11  E-value=7.7e-06  Score=85.31  Aligned_cols=166  Identities=16%  Similarity=0.183  Sum_probs=105.2

Q ss_pred             cCCCCeEE-E-EEcCCCcEEEEEecCCeEEEEEccCCCcee------eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE
Q 005459          254 LGSGDAVC-A-SIAPEQQILAVGTRRGVVELYDLAESASLI------RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG  325 (696)
Q Consensus       254 ~~~~~~v~-v-~~sp~~~~la~g~~dg~v~vw~~~~~~~~~------~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg  325 (696)
                      .||...++ + +++. .+-+++++.|.+|++|.++..+..+      .+...        |+.+|.++.|-.|-+.++++
T Consensus       732 ~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a--------Hkk~i~~igfL~~lr~i~Sc  802 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA--------HKKPIHDIGFLADLRSIASC  802 (1034)
T ss_pred             cCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhh--------ccCcccceeeeeccceeeec
Confidence            57887777 3 4444 4557799999999999998644333      23334        99999999999999888765


Q ss_pred             EcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEec-ce-
Q 005459          326 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GK-  403 (696)
Q Consensus       326 ~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~-  403 (696)
                        ||++.+||.+-++++......                               ++.        +....|.++.- .+ 
T Consensus       803 --D~giHlWDPFigr~Laq~~da-------------------------------pk~--------~a~~~ikcl~nv~~~  841 (1034)
T KOG4190|consen  803 --DGGIHLWDPFIGRLLAQMEDA-------------------------------PKE--------GAGGNIKCLENVDRH  841 (1034)
T ss_pred             --cCcceeecccccchhHhhhcC-------------------------------ccc--------CCCceeEecccCcch
Confidence              789999999888765433221                               100        00001111111 01 


Q ss_pred             ee-eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459          404 CC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR  481 (696)
Q Consensus       404 ~~-~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~  481 (696)
                      .+ +-++...++++.|....+-.           ..|+.-    .-.+.|.-+|++++-+.|+.+|+|-..|.+ +-|.+
T Consensus       842 iliAgcsaeSTVKl~DaRsce~~-----------~E~kVc----na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR  906 (1034)
T KOG4190|consen  842 ILIAGCSAESTVKLFDARSCEWT-----------CELKVC----NAPGPNALTRAIAVADKGNKLAAALSNGCIAILDAR  906 (1034)
T ss_pred             heeeeccchhhheeeecccccce-----------eeEEec----cCCCCchheeEEEeccCcchhhHHhcCCcEEEEecC
Confidence            11 12234556666654433310           011111    112345669999999999999999999999 99999


Q ss_pred             CCc
Q 005459          482 QKK  484 (696)
Q Consensus       482 sg~  484 (696)
                      +|+
T Consensus       907 ~G~  909 (1034)
T KOG4190|consen  907 NGK  909 (1034)
T ss_pred             CCc
Confidence            986

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.08  E-value=0.0012  Score=71.21  Aligned_cols=248  Identities=19%  Similarity=0.169  Sum_probs=127.5

Q ss_pred             CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccCCeeEEE
Q 005459          267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMST  344 (696)
Q Consensus       267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~~~~~~~  344 (696)
                      ++..+.+++.||.+..+|.++ ++.+-....         .+.+.+   +|  ++..++.+..|+.+..||..+++.+..
T Consensus       104 ~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~---------~~~~~~---~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~  170 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAED-GKELWRAKL---------SSEVLS---PPLVANGLVVVRTNDGRLTALDAATGERLWT  170 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCC-CcEeeeecc---------Cceeec---CCEEECCEEEEECCCCeEEEEEcCCCceeeE
Confidence            467788899999999999887 555433322         122221   22  345677777889999999999888776


Q ss_pred             eecccccc----eecccccCCCCCCccceecc--eeeEEEcCCCceEEEEec-CCc------ceEEEE--ec---ceeee
Q 005459          345 IRQISLSS----ISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEE-GSS------ERVLIF--SF---GKCCL  406 (696)
Q Consensus       345 l~~~~~~~----v~~~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~~~~-~~~------~~v~~~--~~---~~~~~  406 (696)
                      .+......    ..++.+. ++    ..++..  ..+..+++++++++.... +..      .++..+  ++   +..+.
T Consensus       171 ~~~~~~~~~~~~~~sp~~~-~~----~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy  245 (377)
T TIGR03300       171 YSRVTPALTLRGSASPVIA-DG----GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVY  245 (377)
T ss_pred             EccCCCceeecCCCCCEEE-CC----EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEE
Confidence            65431110    0111111 11    222211  156666766665433221 000      000000  01   33444


Q ss_pred             eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc-
Q 005459          407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK-  484 (696)
Q Consensus       407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~-  484 (696)
                      .++.++.+..++..+++             ..|..-     .....      ....++.++.+++.+|.+ .+|..+|+ 
T Consensus       246 ~~~~~g~l~a~d~~tG~-------------~~W~~~-----~~~~~------~p~~~~~~vyv~~~~G~l~~~d~~tG~~  301 (377)
T TIGR03300       246 AVSYQGRVAALDLRSGR-------------VLWKRD-----ASSYQ------GPAVDDNRLYVTDADGVVVALDRRSGSE  301 (377)
T ss_pred             EEEcCCEEEEEECCCCc-------------EEEeec-----cCCcc------CceEeCCEEEEECCCCeEEEEECCCCcE
Confidence            45555656555554433             234321     00111      122356778888889999 99998885 


Q ss_pred             -eEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEE--ccCCEEEEEEc
Q 005459          485 -WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD--VYEDYILVTYR  561 (696)
Q Consensus       485 -w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~llv~~~  561 (696)
                       |+.-.  . ... ......-.++.++++     +.+..|.+++.+   ...++.+.++...++..+  ..++.|++.+.
T Consensus       302 ~W~~~~--~-~~~-~~ssp~i~g~~l~~~-----~~~G~l~~~d~~---tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~  369 (377)
T TIGR03300       302 LWKNDE--L-KYR-QLTAPAVVGGYLVVG-----DFEGYLHWLSRE---DGSFVARLKTDGSGIASPPVVVGDGLLVQTR  369 (377)
T ss_pred             EEcccc--c-cCC-ccccCEEECCEEEEE-----eCCCEEEEEECC---CCCEEEEEEcCCCccccCCEEECCEEEEEeC
Confidence             44211  0 000 112223356666665     234578888764   222444444433222222  24567888888


Q ss_pred             CceEEEE
Q 005459          562 PFDVHIF  568 (696)
Q Consensus       562 d~~~~l~  568 (696)
                      |+.+..|
T Consensus       370 dG~l~~~  376 (377)
T TIGR03300       370 DGDLYAF  376 (377)
T ss_pred             CceEEEe
Confidence            8877655

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.07  E-value=9.2e-06  Score=55.73  Aligned_cols=36  Identities=28%  Similarity=0.429  Sum_probs=33.4

Q ss_pred             cCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEE
Q 005459          444 LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD  479 (696)
Q Consensus       444 ~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~  479 (696)
                      +..++.+|+.+|++++|+|++++||+|+.|+.+ +||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            346788999999999999999999999999999 997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.06  E-value=0.0019  Score=77.97  Aligned_cols=116  Identities=10%  Similarity=0.083  Sum_probs=79.7

Q ss_pred             EEEEeCCc-EEEEeeccCCceeeeeeeccee--c-------------C----------CCCeEEEEEcCCCcEEEEEecC
Q 005459          224 FVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE--L-------------G----------SGDAVCASIAPEQQILAVGTRR  277 (696)
Q Consensus       224 ~~~s~dG~-~~~~~~~d~~~~~~~~~~~~~~--~-------------~----------~~~~v~v~~sp~~~~la~g~~d  277 (696)
                      ++++|||+ ++++...++.++.||...+...  .             +          ...+..++++++|+++++-..+
T Consensus       745 IavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N  824 (1057)
T PLN02919        745 ISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN  824 (1057)
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC
Confidence            55788887 6666667778888876533210  0             0          1123458899999999999999


Q ss_pred             CeEEEEEccCCCceeeEEeecc-CCC-----CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee
Q 005459          278 GVVELYDLAESASLIRTVSLYD-WGY-----SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL  341 (696)
Q Consensus       278 g~v~vw~~~~~~~~~~~~~~~~-~~~-----~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~  341 (696)
                      +.|++||.++ +. +.++.+.. .++     ..++-.....|+++|||+.+++-..++.|++||+.++..
T Consensus       825 ~rIrviD~~t-g~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        825 HKIKKLDPAT-KR-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CEEEEEECCC-Ce-EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            9999999876 33 33333211 001     111233567899999999999888999999999988764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.05  E-value=0.00027  Score=68.10  Aligned_cols=198  Identities=10%  Similarity=-0.011  Sum_probs=122.0

Q ss_pred             EEEeeccCCceeeeeeecce-ecCCCCe--EE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCC
Q 005459          233 MSCSVSKKGLKLAEFIKIDK-ELGSGDA--VC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG  308 (696)
Q Consensus       233 ~~~~~~d~~~~~~~~~~~~~-~~~~~~~--v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g  308 (696)
                      +..+++|.++++.+...... ..-|..-  +. ++++||++++++-+....|-.|.+++.++.+..+...+      .+.
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~------t~D  204 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP------TSD  204 (344)
T ss_pred             eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc------cCC
Confidence            34446666666655543211 1223322  33 89999999999999999999999998554443322211      344


Q ss_pred             CeEEEEECCCCCeEEEEEcCCcEEEEEccCCe-eEE---EeecccccceecccccCCCCCCccceecceeeEEEcCCCce
Q 005459          309 PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-LMS---TIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYR  384 (696)
Q Consensus       309 ~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~-~~~---~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~  384 (696)
                      .=.+.+||.....+|++..||++.|||+..-. ++.   .-+.|+.+.+..+.|+|.+..                   .
T Consensus       205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l-------------------D  265 (344)
T KOG4532|consen  205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL-------------------D  265 (344)
T ss_pred             CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc-------------------e
Confidence            45788999999999999999999999996532 222   223355677777777775410                   1


Q ss_pred             EEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecC-eeeecCCCc-eEEEEEcC
Q 005459          385 LYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWP-VQHVAASK  462 (696)
Q Consensus       385 l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~-I~~va~s~  462 (696)
                      |+.. ..|...+..++.                  ..+.+.              +.+.+| ..+..|+.. |....|+.
T Consensus       266 LLf~-sEhfs~~hv~D~------------------R~~~~~--------------q~I~i~~d~~~~~~tq~ifgt~f~~  312 (344)
T KOG4532|consen  266 LLFI-SEHFSRVHVVDT------------------RNYVNH--------------QVIVIPDDVERKHNTQHIFGTNFNN  312 (344)
T ss_pred             EEEE-ecCcceEEEEEc------------------ccCcee--------------eEEecCccccccccccccccccccC
Confidence            1111 233333322222                  111110              111112 233445544 88889999


Q ss_pred             CCCEEEEEeCCccEEEEccCCceEec
Q 005459          463 DGMFLAVAGLHGLILYDIRQKKWRVF  488 (696)
Q Consensus       463 dG~~la~ag~dG~i~w~~~sg~w~~f  488 (696)
                      ++.-+-++.++..+-|++.+++-..|
T Consensus       313 ~n~s~~v~~e~~~ae~ni~srsR~~f  338 (344)
T KOG4532|consen  313 ENESNDVKNELQGAEYNILSRSRFSF  338 (344)
T ss_pred             CCcccccccchhhheeeccccceecc
Confidence            99999999999888898887764444

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.04  E-value=2.2e-05  Score=92.55  Aligned_cols=178  Identities=11%  Similarity=0.179  Sum_probs=123.5

Q ss_pred             eEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459          259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       259 ~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~  338 (696)
                      .-|+.=+|...+-.+|+.||.|++|.... +..+.+++.       .-+..|+.+.|+.+|+.+..+..||.+.+|.+. 
T Consensus      2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~-~~~v~~~rt-------~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGH-GQQVVCFRT-------AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred             eeeecCCCCCceEEecCCCceEEEEeccC-CCeEEEeec-------cCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence            33477788889999999999999999887 666666654       134789999999999999999999999999987 


Q ss_pred             CeeEEEeecccccceecccccCCCCCCccceecc------eeeEEEcCC-CceEEEEecCCcceE--EEEec-ceeeeec
Q 005459          339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG------TSMMQWDEY-GYRLYAIEEGSSERV--LIFSF-GKCCLNR  408 (696)
Q Consensus       339 ~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg------~~~~~W~~~-~~~l~~~~~~~~~~v--~~~~~-~~~~~s~  408 (696)
                      .+...+-+-| ....+..+|-..      .+++.      ..+..||.- ......+...|....  .++.| -+.++||
T Consensus      2282 pk~~~s~qch-nk~~~Df~Fi~s------~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2282 PKPYTSWQCH-NKALSDFRFIGS------LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred             CcceeccccC-Cccccceeeeeh------hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence            3334343334 333333333221      11211      167788853 222222224555554  66666 6778999


Q ss_pred             cCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459          409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       409 ~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s  482 (696)
                      +.+|-+++||+.+...+                         |.++.    +. ...++.+|+.+|.+ +|++..
T Consensus      2355 gr~G~v~l~D~rqrql~-------------------------h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLR-------------------------HTFQA----LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             CCcCcEEEeehHHHHHH-------------------------HHhhh----hh-hhheeeccCcccceEEEEccc
Confidence            99999999998776552                         33333    33 55689999999999 999865

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.02  E-value=0.00024  Score=69.42  Aligned_cols=83  Identities=17%  Similarity=0.182  Sum_probs=65.4

Q ss_pred             eecceecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeE-EeeccCCCCCCCCCCeEEEEECC-CCCeEE
Q 005459          248 IKIDKELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRT-VSLYDWGYSMDDTGPVSCIAWTP-DNSAFA  323 (696)
Q Consensus       248 ~~~~~~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~-~~~~~~~~~~~h~g~V~~l~~sp-dg~~la  323 (696)
                      .+.+.|..|+-... +.|+- +-+++-+|+.||.+.-||++.+++.+-. .+.        |+..|.+|.=|| ++.++|
T Consensus       156 e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kv--------H~~GV~SI~ss~~~~~~I~  227 (339)
T KOG0280|consen  156 EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKV--------HTSGVVSIYSSPPKPTYIA  227 (339)
T ss_pred             eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeeccee--------eecceEEEecCCCCCceEE
Confidence            34445677876666 77776 3578899999999999999954444432 444        899999999886 899999


Q ss_pred             EEEcCCcEEEEEccC
Q 005459          324 VGWKSRGLTVWSVSG  338 (696)
Q Consensus       324 sg~~Dg~v~vW~~~~  338 (696)
                      +|+.|-.|++||...
T Consensus       228 TGsYDe~i~~~DtRn  242 (339)
T KOG0280|consen  228 TGSYDECIRVLDTRN  242 (339)
T ss_pred             Eeccccceeeeehhc
Confidence            999999999999863

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.00  E-value=0.00076  Score=73.20  Aligned_cols=110  Identities=8%  Similarity=0.046  Sum_probs=66.5

Q ss_pred             EEEEEcCCCcE-EEEEecC---CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE-EcC--CcEE
Q 005459          260 VCASIAPEQQI-LAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKS--RGLT  332 (696)
Q Consensus       260 v~v~~sp~~~~-la~g~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg-~~D--g~v~  332 (696)
                      +.-.|||||+. ++..+.+   ..|.++|+.+ ++. +.+..        ..+.+...+|||||+.|+.. +.+  ..|.
T Consensus       191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~~-~~lt~--------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  260 (419)
T PRK04043        191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYT-GKK-EKIAS--------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIY  260 (419)
T ss_pred             EeEEECCCCCcEEEEEEccCCCCEEEEEECCC-CcE-EEEec--------CCCcEEeeEECCCCCEEEEEEccCCCcEEE
Confidence            34899999984 6654443   4688888865 433 33333        35667778899999877643 334  3566


Q ss_pred             EEEccCCeeEEEeecccccceecccccCCCCCCccceecce------eeEEEcCCCceE
Q 005459          333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRL  385 (696)
Q Consensus       333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l  385 (696)
                      ++++.++.. ..+..+ ......+.|+||+    +.++-.+      .+...++.+++.
T Consensus       261 ~~dl~~g~~-~~LT~~-~~~d~~p~~SPDG----~~I~F~Sdr~g~~~Iy~~dl~~g~~  313 (419)
T PRK04043        261 LYDTNTKTL-TQITNY-PGIDVNGNFVEDD----KRIVFVSDRLGYPNIFMKKLNSGSV  313 (419)
T ss_pred             EEECCCCcE-EEcccC-CCccCccEECCCC----CEEEEEECCCCCceEEEEECCCCCe
Confidence            778777753 334332 2223456799998    4333111      455566665554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.99  E-value=0.00046  Score=74.74  Aligned_cols=147  Identities=13%  Similarity=0.163  Sum_probs=94.1

Q ss_pred             CCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCC----ce----eeeeeecceecCCCCeEE-EEEcCCCcEEEEEec
Q 005459          206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG----LK----LAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTR  276 (696)
Q Consensus       206 ~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~----~~----~~~~~~~~~~~~~~~~v~-v~~sp~~~~la~g~~  276 (696)
                      +......+++|....+..++.-.||.+-+.--...+    .+    .-++.-.+.+.||...|. +.||.+.+.|-+...
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence            344556666665555555555555543332211110    00    011111223368999998 999999999999999


Q ss_pred             CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeE-EEeecccccceec
Q 005459          277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM-STIRQISLSSISS  355 (696)
Q Consensus       277 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~-~~l~~~~~~~v~~  355 (696)
                      +|.|.||-+-. ++....+-..      ..+..|.+|+|+.||+.++..++||.|.|=++.|.+.. ..|++..   ...
T Consensus        92 ~GlIiVWmlyk-gsW~EEMiNn------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~---l~h  161 (1189)
T KOG2041|consen   92 SGLIIVWMLYK-GSWCEEMINN------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL---LAH  161 (1189)
T ss_pred             CceEEEEeeec-ccHHHHHhhC------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe---ccc
Confidence            99999999876 4432222111      14567999999999999999999999999999887753 2344421   234


Q ss_pred             ccccCCC
Q 005459          356 PIVKPNQ  362 (696)
Q Consensus       356 ~~~sp~~  362 (696)
                      +.+++|.
T Consensus       162 v~ws~D~  168 (1189)
T KOG2041|consen  162 VLWSEDL  168 (1189)
T ss_pred             eeecccH
Confidence            5667765

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.96  E-value=0.0038  Score=67.57  Aligned_cols=247  Identities=15%  Similarity=0.163  Sum_probs=125.8

Q ss_pred             ceEEEEEeCCcEEEEEccC------------eEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCc
Q 005459           22 QQIIYFKVNNGLLLIASPC------------HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSL   89 (696)
Q Consensus        22 ~~~v~fs~dg~lla~~~~~------------~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg   89 (696)
                      ..+++.+|.|..+|+..+.            .|.|++.+  +.++....=     +. |.+..+.|+.+ ..|++.+.||
T Consensus        31 ~~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s--G~ll~~i~w-----~~-~~iv~~~wt~~-e~LvvV~~dG  101 (410)
T PF04841_consen   31 DYIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS--GKLLSSIPW-----DS-GRIVGMGWTDD-EELVVVQSDG  101 (410)
T ss_pred             ceeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC--CCEeEEEEE-----CC-CCEEEEEECCC-CeEEEEEcCC
Confidence            4567889999999888655            68999885  445555432     22 78899999986 4555667899


Q ss_pred             EEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceee
Q 005459           90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFEL  169 (696)
Q Consensus        90 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~  169 (696)
                      .+++||+.... .... +....            .   ....+..+.+...-+..+++-+.++.++.+.=-.+...... 
T Consensus       102 ~v~vy~~~G~~-~fsl-~~~i~------------~---~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~-  163 (410)
T PF04841_consen  102 TVRVYDLFGEF-QFSL-GEEIE------------E---EKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRR-  163 (410)
T ss_pred             EEEEEeCCCce-eech-hhhcc------------c---cCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhc-
Confidence            99999986322 1111 00000            0   01111122222222244666677777766521111100000 


Q ss_pred             ccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeee
Q 005459          170 VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK  249 (696)
Q Consensus       170 ~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~  249 (696)
                               ...+|.....             .........+            ..++.++...+....+..+...+...
T Consensus       164 ---------~~~~p~~~~~-------------~~~~~~~~~i------------~~l~~~~~~~i~~~~g~~i~~i~~~~  209 (410)
T PF04841_consen  164 ---------LPEIPGLWTK-------------FHWWPSWTVI------------PLLSSDRVVEILLANGETIYIIDENS  209 (410)
T ss_pred             ---------cccCCCcccc-------------cccccccccc------------eEeecCcceEEEEecCCEEEEEEccc
Confidence                     0011100000             0000001111            11223333333333333333222111


Q ss_pred             cceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC
Q 005459          250 IDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR  329 (696)
Q Consensus       250 ~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg  329 (696)
                      .+....+...+.+++||++++||.-..+|.+.+.+.+- .+....+..       +-......|.|.-+.. ++..+. .
T Consensus       210 ~~~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~-------~~~~~p~~~~WCG~da-v~l~~~-~  279 (410)
T PF04841_consen  210 FKQIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDT-------DSKSPPKQMAWCGNDA-VVLSWE-D  279 (410)
T ss_pred             cccccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeec-------CcCCCCcEEEEECCCc-EEEEeC-C
Confidence            11112223444599999999999999999999988654 444444444       1245678999987753 444443 5


Q ss_pred             cEEEEEccCC
Q 005459          330 GLTVWSVSGC  339 (696)
Q Consensus       330 ~v~vW~~~~~  339 (696)
                      .+.+....+.
T Consensus       280 ~l~lvg~~~~  289 (410)
T PF04841_consen  280 ELLLVGPDGD  289 (410)
T ss_pred             EEEEECCCCC
Confidence            6777665444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.94  E-value=0.0016  Score=78.65  Aligned_cols=248  Identities=11%  Similarity=0.080  Sum_probs=132.7

Q ss_pred             EEEEe-CCcEEEEeeccCCceeeeeeeccee--c--C-------------CCCeEEEEEcCCCcEEEEE-ecCCeEEEEE
Q 005459          224 FVLYS-NGQLMSCSVSKKGLKLAEFIKIDKE--L--G-------------SGDAVCASIAPEQQILAVG-TRRGVVELYD  284 (696)
Q Consensus       224 ~~~s~-dG~~~~~~~~d~~~~~~~~~~~~~~--~--~-------------~~~~v~v~~sp~~~~la~g-~~dg~v~vw~  284 (696)
                      +++.+ +|+++++......+..++.......  .  +             -..+..++++++++.|.++ ..++.|+++|
T Consensus       573 vavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id  652 (1057)
T PLN02919        573 LAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREID  652 (1057)
T ss_pred             EEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEe
Confidence            44554 4667776666666666664321100  0  1             0123458999988866554 4567899999


Q ss_pred             ccCCCceeeEEeeccC-C--CCCC-----C-CCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeeccc-----
Q 005459          285 LAESASLIRTVSLYDW-G--YSMD-----D-TGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS-----  349 (696)
Q Consensus       285 ~~~~~~~~~~~~~~~~-~--~~~~-----h-~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~-----  349 (696)
                      ..+  ..+.++.+... +  +..+     . -..-..++|+| +|..+++.+.++.|++|+..++... ++.+.+     
T Consensus       653 ~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~  729 (1057)
T PLN02919        653 FVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNL  729 (1057)
T ss_pred             cCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccC
Confidence            865  34555543110 0  0000     0 11235799999 6667777788899999999877542 222211     


Q ss_pred             ---------ccceecccccCCCCCCcc-ceecce---eeEEEcCCCceEEEEecCC-------------c---------c
Q 005459          350 ---------LSSISSPIVKPNQDCKYE-PLMSGT---SMMQWDEYGYRLYAIEEGS-------------S---------E  394 (696)
Q Consensus       350 ---------~~~v~~~~~sp~~~~~~~-~l~sg~---~~~~W~~~~~~l~~~~~~~-------------~---------~  394 (696)
                               ....+.++++|++    . .+++..   +++.|++.++.......+.             .         .
T Consensus       730 ~g~~~~~~~~~~P~GIavspdG----~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~  805 (1057)
T PLN02919        730 NGSSGTSTSFAQPSGISLSPDL----KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH  805 (1057)
T ss_pred             CCCccccccccCccEEEEeCCC----CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence                     0123446777876    4 333322   7888888765432211100             0         0


Q ss_pred             e-EEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC
Q 005459          395 R-VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL  472 (696)
Q Consensus       395 ~-v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~  472 (696)
                      . =++++. ++..++-..++.++.|+...+....+.-.|.  ....  ..   ....++-.....+++++||+.+++-+.
T Consensus       806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~--~G~~--dG---~~~~a~l~~P~GIavd~dG~lyVaDt~  878 (1057)
T PLN02919        806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK--AGFK--DG---KALKAQLSEPAGLALGENGRLFVADTN  878 (1057)
T ss_pred             CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCC--cCCC--CC---cccccccCCceEEEEeCCCCEEEEECC
Confidence            0 023333 4445555556666666644332211111110  0000  00   000111123568999999998888888


Q ss_pred             CccE-EEEccCCce
Q 005459          473 HGLI-LYDIRQKKW  485 (696)
Q Consensus       473 dG~i-~w~~~sg~w  485 (696)
                      ++.| +||+.+++-
T Consensus       879 Nn~Irvid~~~~~~  892 (1057)
T PLN02919        879 NSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCEEEEEECCCCcc
Confidence            9999 999998763

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.93  E-value=0.0051  Score=62.95  Aligned_cols=260  Identities=16%  Similarity=0.156  Sum_probs=133.1

Q ss_pred             EEEEeCCcEEEEEc---------c--CeEEEeecCCceeeEEEeecChH-HHhhcccccEEEEcCCCcEEEEE--ecCcE
Q 005459           25 IYFKVNNGLLLIAS---------P--CHIELWSSSQHKVRLGKYKRDSE-SVQREGENLQAVWSPDTKLIAVV--TSSLY   90 (696)
Q Consensus        25 v~fs~dg~lla~~~---------~--~~v~iW~~~~~~~~l~~~~r~~~-sl~~~G~~~~v~wsPDg~~lav~--t~dg~   90 (696)
                      +.+||||+.+.+++         +  +-|.+||.. ...+.+...-..+ ....--.....++|+||+++.+.  |-.-.
T Consensus        41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             eeECCCCCEEEEEEEEEeccccccceeEEEEEecC-cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            56899999877651         1  359999994 6666665544432 11110112346788888877663  23334


Q ss_pred             EEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeec
Q 005459           91 LHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELV  170 (696)
Q Consensus        91 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~  170 (696)
                      |-+.|++..+                     ....+.+.++. .+  +-..+..+..-|.||.+..+..+.+-.....  
T Consensus       120 VtVVDl~~~k---------------------vv~ei~~PGC~-~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~--  173 (342)
T PF06433_consen  120 VTVVDLAAKK---------------------VVGEIDTPGCW-LI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQK--  173 (342)
T ss_dssp             EEEEETTTTE---------------------EEEEEEGTSEE-EE--EEEETTEEEEEETTSCEEEEEETSTSSEEEE--
T ss_pred             EEEEECCCCc---------------------eeeeecCCCEE-EE--EecCCCceEEEecCCceEEEEECCCCCEeEe--
Confidence            5555554221                     01112222211 11  1112356777788998888877743221111  


Q ss_pred             cCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCce---eeee
Q 005459          171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK---LAEF  247 (696)
Q Consensus       171 ~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~---~~~~  247 (696)
                               +.-.|.++.+                   -.+..-.|....+.+.+.+=+|+++-.......++   -|..
T Consensus       174 ---------~t~~F~~~~d-------------------p~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~  225 (342)
T PF06433_consen  174 ---------STKVFDPDDD-------------------PLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL  225 (342)
T ss_dssp             ---------EEEESSTTTS--------------------B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred             ---------eccccCCCCc-------------------ccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence                     1112222221                   11111123334445555666777776655544443   3443


Q ss_pred             eec----ceecCCCCeEEEEEcCCCcEEEEEe--------cCC--eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEE
Q 005459          248 IKI----DKELGSGDAVCASIAPEQQILAVGT--------RRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI  313 (696)
Q Consensus       248 ~~~----~~~~~~~~~v~v~~sp~~~~la~g~--------~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l  313 (696)
                      .+.    ..|. ..+.--+++++..+.|.+--        +|+  .|-+||+.+ .+.+..+..         ..++.+|
T Consensus       226 ~t~~e~~~~Wr-PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l---------~~~~~Si  294 (342)
T PF06433_consen  226 LTDAEKADGWR-PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL---------EHPIDSI  294 (342)
T ss_dssp             S-HHHHHTTEE-E-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE---------EEEESEE
T ss_pred             cCccccccCcC-CcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC---------CCccceE
Confidence            221    1221 01222377887655444432        233  356666666 677777776         3468899


Q ss_pred             EECCCCC-eEEEE-EcCCcEEEEEccCCeeEEEeecccc
Q 005459          314 AWTPDNS-AFAVG-WKSRGLTVWSVSGCRLMSTIRQISL  350 (696)
Q Consensus       314 ~~spdg~-~lasg-~~Dg~v~vW~~~~~~~~~~l~~~~~  350 (696)
                      +.|.|.+ +|.+. ..++.+.++|..+++++.++++-|.
T Consensus       295 ~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~  333 (342)
T PF06433_consen  295 AVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE  333 (342)
T ss_dssp             EEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred             EEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence            9999888 55444 4578999999999999999887543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.92  E-value=0.00012  Score=70.32  Aligned_cols=152  Identities=16%  Similarity=0.102  Sum_probs=93.8

Q ss_pred             CCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe-eEEEeecccccceecccccCCCCCCccceecce--------eeE
Q 005459          306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--------SMM  376 (696)
Q Consensus       306 h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~-~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--------~~~  376 (696)
                      |+++-.+=+.|--++.++.++.||.+.+.+...-. ++..+...+......... ..+    +.+.++.        ..+
T Consensus        88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~-~~~----~~i~s~~~g~~n~~d~~~  162 (319)
T KOG4714|consen   88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKIC-RHG----NSILSGGCGNWNAQDNFY  162 (319)
T ss_pred             cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccccccccee-ecc----cEEecCCcceEeecccee
Confidence            55555555556667889999999999999986521 122222111111111000 011    3333322        344


Q ss_pred             EEcCCCceEEEEecCCcceE--EEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCe-eeecC
Q 005459          377 QWDEYGYRLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV-SYISQ  451 (696)
Q Consensus       377 ~W~~~~~~l~~~~~~~~~~v--~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~  451 (696)
                      +|+.+..+.+.........|  .+-++  ...++.|+.||.+.+||..+...                    |. .|..|
T Consensus       163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--------------------p~S~l~ah  222 (319)
T KOG4714|consen  163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--------------------PVSLLKAH  222 (319)
T ss_pred             eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc--------------------hHHHHHHh
Confidence            55554433333322222335  33344  55677888999999999877654                    54 45689


Q ss_pred             CCceEEEEEcC-CCCEEEEEeCCccE-EEEccC
Q 005459          452 NWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       452 ~~~I~~va~s~-dG~~la~ag~dG~i-~w~~~s  482 (696)
                      ..+|+.+-|.| ++..|.++++||.+ +||..+
T Consensus       223 k~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  223 KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             hhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            99999999998 67899999999999 999876

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=97.91  E-value=0.00019  Score=70.09  Aligned_cols=201  Identities=11%  Similarity=0.089  Sum_probs=117.6

Q ss_pred             cEEEEc--C-CCc-EEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEE
Q 005459           71 LQAVWS--P-DTK-LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML  146 (696)
Q Consensus        71 ~~v~ws--P-Dg~-~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~ll  146 (696)
                      ..+.|+  | ||. .++.+-+.|.|.+|..+.........+-       .+.++        .....--..+...+..++
T Consensus        73 ~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~l-------s~~ki--------~~~~~lslD~~~~~~~i~  137 (339)
T KOG0280|consen   73 FDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGL-------SSKKI--------SVVEALSLDISTSGTKIF  137 (339)
T ss_pred             ceeeeeeccCCccceeeeccccceEEEEeeccceeeeeeccc-------chhhh--------hheeeeEEEeeccCceEE
Confidence            466775  2 444 5667778888888888754432211110       00000        000001113344567788


Q ss_pred             EEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEE
Q 005459          147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL  226 (696)
Q Consensus       147 v~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  226 (696)
                      ++.++|.+..+.-+.....                                  .-..+..|+..+...+|+.        
T Consensus       138 vs~s~G~~~~v~~t~~~le----------------------------------~vq~wk~He~E~Wta~f~~--------  175 (339)
T KOG0280|consen  138 VSDSRGSISGVYETEMVLE----------------------------------KVQTWKVHEFEAWTAKFSD--------  175 (339)
T ss_pred             EEcCCCcEEEEecceeeee----------------------------------ecccccccceeeeeeeccc--------
Confidence            9988998875432211100                                  0012333444444433322        


Q ss_pred             EeCCcEEEEeeccCCceeeeeeeccee-----cCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          227 YSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       227 s~dG~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                       .+-.++.+++.|+.+.-||.+.++.+     .-|...|| +.-|| +..+||+|+-|-.|++||.++-++++..-+   
T Consensus       176 -~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~---  251 (339)
T KOG0280|consen  176 -KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK---  251 (339)
T ss_pred             -CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc---
Confidence             23367788888888889998855443     23566666 66565 688999999999999999986455554322   


Q ss_pred             CCCCCCCCCCeEEEEECCC--CCeEEEEEcCCcEEEEEccCC
Q 005459          300 WGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGC  339 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg~v~vW~~~~~  339 (696)
                            -.|.|+.+.++|-  +..|+++ .-++.+|-+...+
T Consensus       252 ------v~GGVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~  286 (339)
T KOG0280|consen  252 ------VGGGVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDK  286 (339)
T ss_pred             ------cccceEEEEecchhhhHHHHHH-HhcCceEEEeccc
Confidence                  3589999999993  3344444 3467777776554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.86  E-value=0.0038  Score=67.24  Aligned_cols=146  Identities=11%  Similarity=-0.002  Sum_probs=75.0

Q ss_pred             cEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459          269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIR  346 (696)
Q Consensus       269 ~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~~~~~~~l~  346 (696)
                      ..+.++..+|.+..+|..+ ++.+-...... +........+..+.-+|  ++..+.++..+|.+..+|..+++......
T Consensus       191 ~~v~~~~~~g~v~ald~~t-G~~~W~~~~~~-~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~  268 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQT-GQPLWEQRVAL-PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD  268 (377)
T ss_pred             CEEEEECCCCEEEEEEccC-CCEeeeecccc-CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec
Confidence            4677888899999999887 54432221100 00000000011111112  34567778888999999999887766554


Q ss_pred             cccccceecccccCCCCCCccceecc--eeeEEEcCCCceEEEEecCCcceE-EEEe-cceeeeeccCCCCceeeeeeec
Q 005459          347 QISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEGSSERV-LIFS-FGKCCLNRGVSGMTYARQVIYG  422 (696)
Q Consensus       347 ~~~~~~v~~~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~~~~~~~~~v-~~~~-~~~~~~s~~~d~~~~~w~~~~~  422 (696)
                      ..   ....+...  +   ...++..  ..+..++..+++++.....-.... .... .+..+..++.++.+.+++..++
T Consensus       269 ~~---~~~~p~~~--~---~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG  340 (377)
T TIGR03300       269 AS---SYQGPAVD--D---NRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDG  340 (377)
T ss_pred             cC---CccCceEe--C---CEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCC
Confidence            21   11122221  1   1222222  167778887776554332111111 1111 1556777778888877775555


Q ss_pred             CC
Q 005459          423 ED  424 (696)
Q Consensus       423 ~~  424 (696)
                      +.
T Consensus       341 ~~  342 (377)
T TIGR03300       341 SF  342 (377)
T ss_pred             CE
Confidence            43

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=97.85  E-value=9.2e-05  Score=75.24  Aligned_cols=79  Identities=15%  Similarity=0.154  Sum_probs=63.7

Q ss_pred             CCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCC
Q 005459          306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG  382 (696)
Q Consensus       306 h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~  382 (696)
                      |-.-+++++||||++.|.++.+|..||+=.......+.++--+|..-|+.++.-++     .+++||+   ++++|+..+
T Consensus       150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-----~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-----YLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-----ceeeecCCCCcEEEEeccc
Confidence            99999999999999999999999999998887766665555433777888887776     4566665   889999988


Q ss_pred             ceEEEEe
Q 005459          383 YRLYAIE  389 (696)
Q Consensus       383 ~~l~~~~  389 (696)
                      ++++.++
T Consensus       225 gk~L~t~  231 (390)
T KOG3914|consen  225 GKLLDTC  231 (390)
T ss_pred             CCccccc
Confidence            8877554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.83  E-value=0.005  Score=64.71  Aligned_cols=308  Identities=13%  Similarity=0.126  Sum_probs=158.3

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEEEEEcCCCcEEEEEecCC---------------eEEEEEcc
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRG---------------VVELYDLA  286 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~v~~sp~~~~la~g~~dg---------------~v~vw~~~  286 (696)
                      +.++|-|+.++..-. ..+.+|......++  .-|.+.-.+.|||.+++|.+=+..+               .+.+||+.
T Consensus        38 ~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~  116 (561)
T COG5354          38 VSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA  116 (561)
T ss_pred             eeecCcchheehhhc-cceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc
Confidence            447888888775433 34677776544332  3355545599999999999866433               48999998


Q ss_pred             CCCceeeEEeeccCCCCCCCCCCeE-EEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCC
Q 005459          287 ESASLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK  365 (696)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~h~g~V~-~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~  365 (696)
                      . +..+..+.....      +...+ -+.||-|.+++|=-.. ..+.+.++...-....++.-....+....++|.+.  
T Consensus       117 s-g~iv~sf~~~~q------~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n--  186 (561)
T COG5354         117 S-GMIVFSFNGISQ------PYLGWPVLKFSIDDKYVARVVG-SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGN--  186 (561)
T ss_pred             C-ceeEeeccccCC------cccccceeeeeecchhhhhhcc-CeEEEEecCCccccCchhhccccceeeEEecCCCC--
Confidence            8 777777766221      11133 6889998887765433 57888887222111111111122355556666641  


Q ss_pred             ccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeecc---CCCCceeeee------------------eecCC
Q 005459          366 YEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRG---VSGMTYARQV------------------IYGED  424 (696)
Q Consensus       366 ~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~---~d~~~~~w~~------------------~~~~~  424 (696)
                      ..      ....|.++...     ....-+++.+...+.+.+-+   .|+--.-|..                  ..|+.
T Consensus       187 ~~------~la~~tPEk~~-----kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfges  255 (561)
T COG5354         187 HD------ELAYWTPEKLN-----KPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGES  255 (561)
T ss_pred             Cc------eEEEEccccCC-----CCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccc
Confidence            11      12344443211     00001112222211111111   0110111111                  11223


Q ss_pred             eEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEe--CCccE-EEEccCCceEecCCccceeeeEEEe
Q 005459          425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG--LHGLI-LYDIRQKKWRVFGDITQEQKIQSKG  501 (696)
Q Consensus       425 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag--~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~  501 (696)
                      .+++++-.+        ..+|-.. .-.+||-..+|+|+++.+|+.+  ..-.+ ++|+... .+...-+..++.+   -
T Consensus       256 nLyl~~~~e--------~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~---~  322 (561)
T COG5354         256 NLYLLRITE--------RSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTI---F  322 (561)
T ss_pred             eEEEEeecc--------cccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccc---c
Confidence            333332211        1123322 5578999999999999887755  45566 8888765 3322222222210   1


Q ss_pred             EeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeE-EeecCC-ccEEEEccCCEEEEEEc------CceEEEEEEE
Q 005459          502 LLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLC-RKSLLA-KPIVMDVYEDYILVTYR------PFDVHIFHVK  571 (696)
Q Consensus       502 ~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~-~~~~~~-~~l~~~~~~~~llv~~~------d~~~~l~~~~  571 (696)
                      +.=..++++.+++.  ..+..+-+|++.   +.+... ....++ ...-.++++.++.+.+.      |+.+.||++.
T Consensus       323 fsp~~r~il~agF~--nl~gni~i~~~~---~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         323 FSPHERYILFAGFD--NLQGNIEIFDPA---GRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             ccCcccEEEEecCC--ccccceEEeccC---CceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence            12245667776553  455677788774   222222 222222 22334578888887433      5778888874

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.79  E-value=0.0004  Score=66.70  Aligned_cols=74  Identities=20%  Similarity=0.317  Sum_probs=61.3

Q ss_pred             eEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEE
Q 005459          259 AVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWS  335 (696)
Q Consensus       259 ~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~  335 (696)
                      ++. ++-+| ...++++|+.||.+-+||++....+.-.++.        |+.+++.+-|.| ++..|+++++||.+..||
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a--------hk~~i~eV~FHpk~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA--------HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH--------hhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence            354 77777 4678889999999999999984344445556        999999999999 889999999999999999


Q ss_pred             ccCCe
Q 005459          336 VSGCR  340 (696)
Q Consensus       336 ~~~~~  340 (696)
                      ..+.-
T Consensus       253 as~~~  257 (319)
T KOG4714|consen  253 ASTTF  257 (319)
T ss_pred             CCCce
Confidence            88753

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.74  E-value=0.00014  Score=78.01  Aligned_cols=74  Identities=23%  Similarity=0.452  Sum_probs=60.4

Q ss_pred             CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459          257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~  336 (696)
                      ..++|+++||+...++.||.||+|.+||... + ..... .        +.-..+.++|+|+|..+++|++.|.+.+||+
T Consensus       260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~-~t~~~-k--------a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~  328 (545)
T PF11768_consen  260 SQVICCARSPSEDKLVLGCEDGSIILYDTTR-G-VTLLA-K--------AEFIPTLIAWHPDGAIFVVGSEQGELQCFDM  328 (545)
T ss_pred             CcceEEecCcccceEEEEecCCeEEEEEcCC-C-eeeee-e--------ecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence            4567799999999999999999999999875 2 22222 2        3445789999999999999999999999998


Q ss_pred             cCCee
Q 005459          337 SGCRL  341 (696)
Q Consensus       337 ~~~~~  341 (696)
                      .-...
T Consensus       329 ALspi  333 (545)
T PF11768_consen  329 ALSPI  333 (545)
T ss_pred             ecCcc
Confidence            65543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.72  E-value=0.00016  Score=70.79  Aligned_cols=265  Identities=13%  Similarity=0.109  Sum_probs=137.1

Q ss_pred             HhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccc-----cCCCCCCCceeeeeeEEEeeeccccccceeEEEe
Q 005459           64 VQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQ-----IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI  138 (696)
Q Consensus        64 l~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~  138 (696)
                      ..+...+++|.|-..|.+||+|...|.+.+|.-.....-.+     .++|.++=..+.+++  +++++      ..|.-+
T Consensus        23 ~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSle--ieEKi------n~I~w~   94 (460)
T COG5170          23 STEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLE--IEEKI------NAIEWF   94 (460)
T ss_pred             ccccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhcc--HHHHh------hheeee
Confidence            34456778999999999999999999999997654431101     223333212222221  12221      122222


Q ss_pred             eeC-CCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCC-cccccCCCccccCCcCCCcccEEEE--
Q 005459          139 VSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG-LASVDTSGAFVSDHKFPISSAIIWL--  214 (696)
Q Consensus       139 ~~~-~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~-l~~~~~~~~~~~~~~~~~~~~i~~~--  214 (696)
                      .+. +..+++.+.+.+|.+|..........       +...+...-+++-++ +.+...   +..-.+..+...|..-  
T Consensus        95 ~~t~r~hFLlstNdktiKlWKiyeknlk~v-------a~nnls~~~~~~~~g~~~s~~~---l~lprls~hd~iiaa~p~  164 (460)
T COG5170          95 DDTGRNHFLLSTNDKTIKLWKIYEKNLKVV-------AENNLSDSFHSPMGGPLTSTKE---LLLPRLSEHDEIIAAKPC  164 (460)
T ss_pred             cCCCcceEEEecCCceeeeeeeecccchhh-------hccccccccccccCCCcCCHHH---hhcccccccceEEEeccc
Confidence            222 36789999999999864332211100       111111111111111 100000   0000111222222110  


Q ss_pred             -EEccC---cceEEEEEeCCcEEEEeeccCCceeeeeeeccee------cCC-----CCeEE-EEEcCC-CcEEEEEecC
Q 005459          215 -ELCLP---MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGS-----GDAVC-ASIAPE-QQILAVGTRR  277 (696)
Q Consensus       215 -~~~~~---~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~------~~~-----~~~v~-v~~sp~-~~~la~g~~d  277 (696)
                       .|...   -...+.+.+|...+++ +.|-.+++|+......-      ..|     ...+. ..|+|. ...+.-.+..
T Consensus       165 rvyaNaH~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk  243 (460)
T COG5170         165 RVYANAHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK  243 (460)
T ss_pred             eeccccceeEeeeeeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence             01100   0234557777776664 56777889987543210      112     12344 788985 5566777888


Q ss_pred             CeEEEEEccCCCce---ee----EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC-CeeEEEeecc
Q 005459          278 GVVELYDLAESASL---IR----TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQI  348 (696)
Q Consensus       278 g~v~vw~~~~~~~~---~~----~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~-~~~~~~l~~~  348 (696)
                      |+|++-|++...-+   .+    ++.+.+...-.+-...|..+.|+|+|+++++-.. -+|++||+.- ..++.|+.-|
T Consensus       244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence            99999999852111   11    1111111111123457889999999999998877 7999999954 3456666544

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.00016  Score=77.59  Aligned_cols=75  Identities=20%  Similarity=0.364  Sum_probs=62.8

Q ss_pred             EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeE-EEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459          260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       260 v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~-~l~~spdg~~lasg~~Dg~v~vW~~~~  338 (696)
                      ..+.|||.-.+||.+..+|.|.++.++  .+.+-++..        |.-.|+ +++|.|||+.||+|..||+|++-|++.
T Consensus        24 ~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~--------p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   24 KRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPI--------PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             EEEEEcCccchhheeccCCcEEEEEec--cceeEeccC--------CCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence            349999999999999999999999887  344555554        455565 999999999999999999999999998


Q ss_pred             CeeEEE
Q 005459          339 CRLMST  344 (696)
Q Consensus       339 ~~~~~~  344 (696)
                      +..+..
T Consensus        94 ~~~l~~   99 (665)
T KOG4640|consen   94 GGRLVS   99 (665)
T ss_pred             CCceec
Confidence            876655

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.65  E-value=0.0017  Score=71.72  Aligned_cols=184  Identities=16%  Similarity=0.187  Sum_probs=112.9

Q ss_pred             EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459          260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC  339 (696)
Q Consensus       260 v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~  339 (696)
                      .|++++  ++.||.|+-+|.|++++.+.  .. .+...        |+..      .-+|.++|||+.||+|-|-++.+.
T Consensus        43 s~~av~--~~~~~~GtH~g~v~~~~~~~--~~-~~~~~--------~s~~------~~~Gey~asCS~DGkv~I~sl~~~  103 (846)
T KOG2066|consen   43 SCCAVH--DKFFALGTHRGAVYLTTCQG--NP-KTNFD--------HSSS------ILEGEYVASCSDDGKVVIGSLFTD  103 (846)
T ss_pred             HHHHhh--cceeeeccccceEEEEecCC--cc-ccccc--------cccc------ccCCceEEEecCCCcEEEeeccCC
Confidence            346665  56799999999999999864  33 33333        4443      568999999999999999999998


Q ss_pred             eeEEEeecccccceecccccCCCC-CCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceee-
Q 005459          340 RLMSTIRQISLSSISSPIVKPNQD-CKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYAR-  417 (696)
Q Consensus       340 ~~~~~l~~~~~~~v~~~~~sp~~~-~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w-  417 (696)
                      +..+++.-+  ..+.+++++|+-. .....+++|                                    +.-| +.+. 
T Consensus       104 ~~~~~~df~--rpiksial~Pd~~~~~sk~fv~G------------------------------------G~ag-lvL~e  144 (846)
T KOG2066|consen  104 DEITQYDFK--RPIKSIALHPDFSRQQSKQFVSG------------------------------------GMAG-LVLSE  144 (846)
T ss_pred             ccceeEecC--CcceeEEeccchhhhhhhheeec------------------------------------Ccce-EEEeh
Confidence            877776654  4688888888821 111223322                                    2221 1000 


Q ss_pred             -eeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceEecCCccc--e
Q 005459          418 -QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQ--E  494 (696)
Q Consensus       418 -~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~~f~~~~~--e  494 (696)
                       ..+...+                    +.....-.+||.++.|  .|.++|-|..+|.-+||+.+++--.+-....  .
T Consensus       145 r~wlgnk~--------------------~v~l~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~  202 (846)
T KOG2066|consen  145 RNWLGNKD--------------------SVVLSEGEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSV  202 (846)
T ss_pred             hhhhcCcc--------------------ceeeecCccceEEEEe--cCcEEEEecCCCcEEEeccccceeeccCCCCCCC
Confidence             0001111                    1122334678998888  6889999999999999999886433221111  1


Q ss_pred             e-eeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeC
Q 005459          495 Q-KIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR  528 (696)
Q Consensus       495 ~-~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~  528 (696)
                      + +..-..+.|.++..++.+..     ..|++.+.
T Consensus       203 R~e~fpphl~W~~~~~LVIGW~-----d~v~i~~I  232 (846)
T KOG2066|consen  203 RPELFPPHLHWQDEDRLVIGWG-----DSVKICSI  232 (846)
T ss_pred             CcccCCCceEecCCCeEEEecC-----CeEEEEEE
Confidence            1 11122688976554444343     34555544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.63  E-value=0.0082  Score=67.05  Aligned_cols=137  Identities=19%  Similarity=0.289  Sum_probs=90.1

Q ss_pred             CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC-ceeeEEeeccCCCCCCCCCCeEEEEECCCCCe-EEEEEcCCcEEEE
Q 005459          258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA-FAVGWKSRGLTVW  334 (696)
Q Consensus       258 ~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~-lasg~~Dg~v~vW  334 (696)
                      .+++ +++|.+-+.+|+|-.||.|..+.=+-.. +..+..      +...-.++|+.+++..||+. ++++.. ..|.++
T Consensus       126 ~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~------~~~~~~~pITgL~~~~d~~s~lFv~Tt-~~V~~y  198 (933)
T KOG2114|consen  126 SPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD------YSHRGKEPITGLALRSDGKSVLFVATT-EQVMLY  198 (933)
T ss_pred             CcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee------eeccCCCCceeeEEecCCceeEEEEec-ceeEEE
Confidence            3455 9999999999999999999998743210 111111      11124679999999999997 444444 679999


Q ss_pred             EccCCe-eEEEeecccccceecccccCCCCCCccceecce-eeEEEcCCCceEEEEec-CCcceEEEEecceee
Q 005459          335 SVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE-GSSERVLIFSFGKCC  405 (696)
Q Consensus       335 ~~~~~~-~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~-~~~~~v~~~~~~~~~  405 (696)
                      ++.+.. ..+.+..+| .+.++..+++..   ++.+.+++ -+.+++..+...-.++. ||......++++-.+
T Consensus       199 ~l~gr~p~~~~ld~~G-~~lnCss~~~~t---~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~L  268 (933)
T KOG2114|consen  199 SLSGRTPSLKVLDNNG-ISLNCSSFSDGT---YQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGLLL  268 (933)
T ss_pred             EecCCCcceeeeccCC-ccceeeecCCCC---ccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEecCEEE
Confidence            998665 355566663 457777777654   24555555 66778877655555555 776666666654433

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.0043  Score=63.40  Aligned_cols=77  Identities=13%  Similarity=0.276  Sum_probs=62.5

Q ss_pred             ecCCCCeEE-EEEcCCCc-EEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEEcCC
Q 005459          253 ELGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSR  329 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~~Dg  329 (696)
                      +.+|...+. ++|||..+ ++..++.+.+|+|.|+.+ .........        | ..+++++|.-|.. +|.+|-.+|
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a--------~-~~~wSC~wDlde~h~IYaGl~nG  258 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIA--------Y-NQIWSCCWDLDERHVIYAGLQNG  258 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheec--------c-CCceeeeeccCCcceeEEeccCc
Confidence            366778888 99999877 889999999999999987 444444544        5 7899999998654 677888899


Q ss_pred             cEEEEEccCC
Q 005459          330 GLTVWSVSGC  339 (696)
Q Consensus       330 ~v~vW~~~~~  339 (696)
                      .|.++|+...
T Consensus       259 ~VlvyD~R~~  268 (463)
T KOG1645|consen  259 MVLVYDMRQP  268 (463)
T ss_pred             eEEEEEccCC
Confidence            9999999643

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.57  E-value=0.00059  Score=74.25  Aligned_cols=269  Identities=15%  Similarity=0.183  Sum_probs=158.3

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeee---ecceecCCCCe--EE-EEEcC--CCcEEEEEecCCeEEEEEccCCCc--eee
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFI---KIDKELGSGDA--VC-ASIAP--EQQILAVGTRRGVVELYDLAESAS--LIR  293 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~--v~-v~~sp--~~~~la~g~~dg~v~vw~~~~~~~--~~~  293 (696)
                      +.+.|.|+-++.++.-+ +.+.|+.   ++.++.-|..+  +. +.|||  .-.+-++...+..-.+|++.....  .-.
T Consensus        30 ~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef  108 (1081)
T KOG0309|consen   30 VSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF  108 (1081)
T ss_pred             eeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE
Confidence            45678888776665443 2223332   33344334332  22 55555  345555666666777899875322  223


Q ss_pred             EEeeccCCCCCCCCCCeEEEEECCCC-CeEEEEEcCCcEEEEEccCCe-eEEEeecccccceecccccCCCCCCccceec
Q 005459          294 TVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMS  371 (696)
Q Consensus       294 ~~~~~~~~~~~~h~g~V~~l~~spdg-~~lasg~~Dg~v~vW~~~~~~-~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~s  371 (696)
                      .+++        |+.+|+.+.|.|.. ..||+++-|-.+-.||+.... .+.....- .+..+.++++-..+   ..+++
T Consensus       109 ~lhg--------hsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w-~s~asqVkwnyk~p---~vlas  176 (1081)
T KOG0309|consen  109 VLHG--------HSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW-RSAASQVKWNYKDP---NVLAS  176 (1081)
T ss_pred             EEec--------CccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc-cccCceeeecccCc---chhhh
Confidence            4556        99999999999854 489999999999999997653 23322221 12234455543221   33443


Q ss_pred             ce--eeEEEcCC-CceEEEEecCCcceEEEEec----ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeec
Q 005459          372 GT--SMMQWDEY-GYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL  444 (696)
Q Consensus       372 g~--~~~~W~~~-~~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~  444 (696)
                      .-  .+.+|+.. ++..+...++|...+..+.|    -..+.+.+.|++++.|+.......                   
T Consensus       177 shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e-------------------  237 (1081)
T KOG0309|consen  177 SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE-------------------  237 (1081)
T ss_pred             ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc-------------------
Confidence            32  78899985 55677778888888877777    345789999999999997654431                   


Q ss_pred             CeeeecCCCceEEEEEcCCCCEEEEEeCCc--cE-EEEccC--CceEecCCccceeeeE-----EEeEeeeCc-------
Q 005459          445 PVSYISQNWPVQHVAASKDGMFLAVAGLHG--LI-LYDIRQ--KKWRVFGDITQEQKIQ-----SKGLLWLGK-------  507 (696)
Q Consensus       445 ~~~~~~~~~~I~~va~s~dG~~la~ag~dG--~i-~w~~~s--g~w~~f~~~~~e~~~~-----v~~~~w~~~-------  507 (696)
                      +......+.||.-..+-|=|.-..+--..|  .+ .++.+.  .+|..|.....-..|.     |..+.|...       
T Consensus       238 ~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~  317 (1081)
T KOG0309|consen  238 SKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDY  317 (1081)
T ss_pred             cceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCC
Confidence            333344566777777777655332222222  33 554432  3566665444333333     345667522       


Q ss_pred             ----E-EEEEEeecCCCeEEEEEeeCC
Q 005459          508 ----I-IVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       508 ----~-lv~~~~~~~~~~~~lr~y~~~  529 (696)
                          + ||+=     +++..||+|+.+
T Consensus       318 d~rdfQLVTW-----SkD~~lrlWpI~  339 (1081)
T KOG0309|consen  318 DSRDFQLVTW-----SKDQTLRLWPID  339 (1081)
T ss_pred             CccceeEEEe-----ecCCceEeeecc
Confidence                2 3332     455677888765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.56  E-value=0.0033  Score=61.90  Aligned_cols=272  Identities=15%  Similarity=0.175  Sum_probs=143.6

Q ss_pred             CceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEee------------cChHHHhhcccccEEEEcCCCc--EEEEE
Q 005459           21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYK------------RDSESVQREGENLQAVWSPDTK--LIAVV   85 (696)
Q Consensus        21 ~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~------------r~~~sl~~~G~~~~v~wsPDg~--~lav~   85 (696)
                      -...|.|.-.|.+||++. .+.|.++.-++..  -+.++            .-.++++-...+..+.|-.|+.  .+.+.
T Consensus        28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~--~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          28 KITAVEFDETGLYLATGDKGGRVVLFEREKSY--GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             eeeEEEeccccceEeecCCCceEEEeeccccc--ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            344477888899999885 4678887654211  11110            1123333345667888876665  57888


Q ss_pred             ecCcEEEEEEEEecCccc------ccCCCCCCCceeeee------eE--------EEeeeccccccceeEEEeeeCC-Ce
Q 005459           86 TSSLYLHIFKVQITEKSI------QIGGKQPSGLFFIKI------SL--------VLNEQLPFAEKGLSVSNIVSDN-KH  144 (696)
Q Consensus        86 t~dg~l~l~~l~~~~~~~------~~~~~~~~~~~~~~~------~l--------~~~~~~~~~~~~~~v~~~~~~~-~~  144 (696)
                      |.|.+|++|++...+.+.      ....|.+.+..+.+.      .+        ....++....+.-.+.+++.+. ++
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            999999999997553221      111122111111110      00        0011111234444555665544 33


Q ss_pred             EEEEecCCcEEEEecCCccc-cceee-ccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcc-
Q 005459          145 MLLGLSDGSLYSISWKGEFY-GAFEL-VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR-  221 (696)
Q Consensus       145 llv~t~~g~i~~~~w~~~~~-~~~~~-~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-  221 (696)
                      .++..++=.|-+  |+.+.. +.+.+ ..+|+.-.                            +-..-|++-+|+|.++ 
T Consensus       186 t~lSaDdLrINL--Wnl~i~D~sFnIVDiKP~nme----------------------------eLteVItSaeFhp~~cn  235 (460)
T COG5170         186 TLLSADDLRINL--WNLEIIDGSFNIVDIKPHNME----------------------------ELTEVITSAEFHPEMCN  235 (460)
T ss_pred             eeeeccceeeee--ccccccCCceEEEeccCccHH----------------------------HHHHHHhhcccCHhHcc
Confidence            444445545544  654331 22221 01111100                            0012356667777774 


Q ss_pred             eEEEEEeCCcEEEEeeccCCceeeeeeec------cee-------------cCCCCeEE-EEEcCCCcEEEEEecCCeEE
Q 005459          222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKI------DKE-------------LGSGDAVC-ASIAPEQQILAVGTRRGVVE  281 (696)
Q Consensus       222 ~~~~~s~dG~~~~~~~~d~~~~~~~~~~~------~~~-------------~~~~~~v~-v~~sp~~~~la~g~~dg~v~  281 (696)
                      .+..-++.|.          +++-|.+..      .++             .+....+. +.|+++|++|++-.- -+|+
T Consensus       236 ~fmYSsSkG~----------Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvk  304 (460)
T COG5170         236 VFMYSSSKGE----------IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVK  304 (460)
T ss_pred             eEEEecCCCc----------EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEE
Confidence            3333334444          444443311      000             11234456 899999999987543 5999


Q ss_pred             EEEccCCCceeeEEeeccC-----CCCCCCCCCe---EEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459          282 LYDLAESASLIRTVSLYDW-----GYSMDDTGPV---SCIAWTPDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       282 vw~~~~~~~~~~~~~~~~~-----~~~~~h~g~V---~~l~~spdg~~lasg~~Dg~v~vW~~  336 (696)
                      +||++....+++++..+.-     -... ....|   ..+.||.|.+.+.+|+..+..-++-+
T Consensus       305 iwDvnm~k~pikTi~~h~~l~~~l~d~Y-EnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         305 IWDVNMAKNPIKTIPMHCDLMDELNDVY-ENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             EEecccccCCceeechHHHHHHHHHhhh-hccceeeeEEEEecCCcccccccccccceeeecc
Confidence            9999986677887754210     0000 12233   35889999999999999877766653

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.56  E-value=0.015  Score=58.49  Aligned_cols=128  Identities=15%  Similarity=0.198  Sum_probs=75.3

Q ss_pred             EEEEeCCcEEEEeeccCCc------eeeeeeec-c--ee-cCCCCeEEEEEcCCCcEEE-EEecCCeEEEEEccCCCc-e
Q 005459          224 FVLYSNGQLMSCSVSKKGL------KLAEFIKI-D--KE-LGSGDAVCASIAPEQQILA-VGTRRGVVELYDLAESAS-L  291 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~------~~~~~~~~-~--~~-~~~~~~v~v~~sp~~~~la-~g~~dg~v~vw~~~~~~~-~  291 (696)
                      +++.++|+++++.......      +++-.... +  .. .+-..+--++|+||++.|. +-+..+.|..|+++..+. .
T Consensus        91 ~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~  170 (246)
T PF08450_consen   91 VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL  170 (246)
T ss_dssp             EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE
T ss_pred             EEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccce
Confidence            4477888887776643221      12222111 1  11 1112222399999998665 567788999999875333 1


Q ss_pred             --eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccc
Q 005459          292 --IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV  358 (696)
Q Consensus       292 --~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~  358 (696)
                        .+.+....     .-.+..-.+++.++|+..++.+..+.|.+++.. ++++..+.-. ...+++++|
T Consensus       171 ~~~~~~~~~~-----~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~f  232 (246)
T PF08450_consen  171 SNRRVFIDFP-----GGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAF  232 (246)
T ss_dssp             EEEEEEEE-S-----SSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEE
T ss_pred             eeeeeEEEcC-----CCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEE
Confidence              12221100     012347789999999999999989999999998 5566666544 235677777

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.56  E-value=0.004  Score=68.05  Aligned_cols=112  Identities=13%  Similarity=0.182  Sum_probs=78.3

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeeccee----cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeec
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY  298 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~  298 (696)
                      .++...++.++.++..|.+.+.+-..++..    .+-...++ +.+|++..++|.|+..|.|.||.+.. ..........
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~~t  117 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDYVT  117 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcceeec
Confidence            345566677777777666666654433221    12345666 89999999999999999999999886 3221111110


Q ss_pred             cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459          299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~  338 (696)
                      .  .-..|...|++++||+||..+.+|...|+|.+-.+..
T Consensus       118 ~--~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  118 P--CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             c--ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            0  0112788999999999999999999999998887765

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.56  E-value=0.014  Score=59.19  Aligned_cols=93  Identities=13%  Similarity=0.204  Sum_probs=59.9

Q ss_pred             EEEcC-CCcEEEEEecCCe-EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-----CCcEEEE
Q 005459          262 ASIAP-EQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-----SRGLTVW  334 (696)
Q Consensus       262 v~~sp-~~~~la~g~~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-----Dg~v~vW  334 (696)
                      ++++| +...+|++-.-|+ ..+||..+ ++..+.+...+--.-.+|      -.|||||++|.+.-.     .|.|-||
T Consensus        10 ~a~~p~~~~avafaRRPG~~~~v~D~~~-g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen   10 VAAHPTRPEAVAFARRPGTFALVFDCRT-GQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             eeeCCCCCeEEEEEeCCCcEEEEEEcCC-CceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEE
Confidence            67788 6778888888775 47888887 666665554111111123      579999999998633     4689999


Q ss_pred             Ecc-CCeeEEEeecccccceecccccCCC
Q 005459          335 SVS-GCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       335 ~~~-~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      |+. +.+.+..+..+|-. -..+.+.||+
T Consensus        83 d~~~~~~ri~E~~s~GIG-PHel~l~pDG  110 (305)
T PF07433_consen   83 DAARGYRRIGEFPSHGIG-PHELLLMPDG  110 (305)
T ss_pred             ECcCCcEEEeEecCCCcC-hhhEEEcCCC
Confidence            998 55566666655332 1233445555

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.34  E-value=0.05  Score=63.31  Aligned_cols=235  Identities=14%  Similarity=0.134  Sum_probs=125.3

Q ss_pred             ccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEE
Q 005459           68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLL  147 (696)
Q Consensus        68 G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv  147 (696)
                      ++++++.|.-|...|.+++..|.|.+-|.++...                   ..-+.   ........++++|.+.+++
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-------------------eivg~---vd~GI~aaswS~Dee~l~l  126 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-------------------EIVGN---VDNGISAASWSPDEELLAL  126 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccce-------------------eeeee---ccCceEEEeecCCCcEEEE
Confidence            6889999999999999999999999987764321                   00111   0111233466778888888


Q ss_pred             EecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCC-------CccccCCcCCCcccEEEEEEccCc
Q 005459          148 GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTS-------GAFVSDHKFPISSAIIWLELCLPM  220 (696)
Q Consensus       148 ~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~  220 (696)
                      .|..+++....-+-+......     .+....+.-.|-.   .-|++..       +.+.......+...+..++.+. -
T Consensus       127 iT~~~tll~mT~~f~~i~E~~-----L~~d~~~~sk~v~---VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~-~  197 (1265)
T KOG1920|consen  127 ITGRQTLLFMTKDFEPIAEKP-----LDADDERKSKFVN---VGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD-H  197 (1265)
T ss_pred             EeCCcEEEEEeccccchhccc-----cccccccccccce---ecccccceeeecchhhhcccccccccccccchhhcc-C
Confidence            888888877643222111111     1000000000000   0011110       0000000000000011111110 0


Q ss_pred             ceEEEEEeCCcEEEEee-----ccCCceeeeeeeccee----cCCCCeEEEEEcCCCcEEEEEe---cCCeEEEEEccCC
Q 005459          221 RLLFVLYSNGQLMSCSV-----SKKGLKLAEFIKIDKE----LGSGDAVCASIAPEQQILAVGT---RRGVVELYDLAES  288 (696)
Q Consensus       221 ~~~~~~s~dG~~~~~~~-----~d~~~~~~~~~~~~~~----~~~~~~v~v~~sp~~~~la~g~---~dg~v~vw~~~~~  288 (696)
                      ...+.+--||+++++..     ..+.+++||.. +..-    ....-.-+++|-|.|.++|+-.   .|+.|.+|.-+. 
T Consensus       198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG-  275 (1265)
T KOG1920|consen  198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG-  275 (1265)
T ss_pred             CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC-
Confidence            12244567888887743     23678899876 2110    0111123489999999999864   456788887542 


Q ss_pred             CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE---EEcCCcEEEEEccCCe
Q 005459          289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV---GWKSRGLTVWSVSGCR  340 (696)
Q Consensus       289 ~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las---g~~Dg~v~vW~~~~~~  340 (696)
                       ..-..+.. .+|   ....+|..++|+.++..||+   ..+...|++|-+.+..
T Consensus       276 -L~hg~f~l-~~p---~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  276 -LRHGEFVL-PFP---LDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             -cccccccc-CCc---ccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence             11111111 011   13445999999999999998   5665669999887654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.34  E-value=0.0008  Score=67.20  Aligned_cols=116  Identities=9%  Similarity=0.094  Sum_probs=82.9

Q ss_pred             EEEcCCCcEEEEEecCCeEEEEEccCC----CceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEc
Q 005459          262 ASIAPEQQILAVGTRRGVVELYDLAES----ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       262 v~~sp~~~~la~g~~dg~v~vw~~~~~----~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~  336 (696)
                      ..|.-.++++..|+.+|.|.++|++..    +.+.+.+.         |...|++|.--. ++++|.+.+.+|+|++||.
T Consensus       258 lQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly---------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~  328 (425)
T KOG2695|consen  258 LQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY---------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDL  328 (425)
T ss_pred             HHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE---------cCcchhhhhhhccccceEeeccCcCceeEeee
Confidence            677778899999999999999999873    12223332         788899987666 7889999999999999999


Q ss_pred             cCCee---EEEeecccccceecccccCCCCCCc-cceecce---eeEEEcCCCceEEEEec
Q 005459          337 SGCRL---MSTIRQISLSSISSPIVKPNQDCKY-EPLMSGT---SMMQWDEYGYRLYAIEE  390 (696)
Q Consensus       337 ~~~~~---~~~l~~~~~~~v~~~~~sp~~~~~~-~~l~sg~---~~~~W~~~~~~l~~~~~  390 (696)
                      .--++   +.+..||    |+..+.-|..-... ..++++.   -.++|..+.++|+.+..
T Consensus       329 R~~K~~~~V~qYeGH----vN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  329 RATKCKKSVMQYEGH----VNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             hhhhcccceeeeecc----cccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence            66555   8888888    34444333322111 3333333   66789988888887764

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.29  E-value=0.068  Score=58.12  Aligned_cols=214  Identities=14%  Similarity=0.130  Sum_probs=99.6

Q ss_pred             eEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459          259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       259 ~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~  338 (696)
                      +..+++||+|+.+++ +.||.-.+|.... ....             ..|.-....|++.| .+|+-...++|+++.-..
T Consensus        35 p~~ls~npngr~v~V-~g~geY~iyt~~~-~r~k-------------~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~   98 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLV-CGDGEYEIYTALA-WRNK-------------AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFK   98 (443)
T ss_dssp             -SEEEE-TTSSEEEE-EETTEEEEEETTT-TEEE-------------EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTE
T ss_pred             CeeEEECCCCCEEEE-EcCCEEEEEEccC-Cccc-------------ccCceeEEEEecCc-cEEEEECCCeEEEEEcCc
Confidence            445999999999999 7789999998443 2222             12345778999954 577777778898874332


Q ss_pred             CeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeee
Q 005459          339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQ  418 (696)
Q Consensus       339 ~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~  418 (696)
                      ......++-             ..          ....++.   |.++...                    .++.+.++|
T Consensus        99 ~~~~k~i~~-------------~~----------~~~~If~---G~LL~~~--------------------~~~~i~~yD  132 (443)
T PF04053_consen   99 NEVVKSIKL-------------PF----------SVEKIFG---GNLLGVK--------------------SSDFICFYD  132 (443)
T ss_dssp             E-TT------------------SS-----------EEEEE----SSSEEEE--------------------ETTEEEEE-
T ss_pred             cccceEEcC-------------Cc----------ccceEEc---CcEEEEE--------------------CCCCEEEEE
Confidence            221111110             00          0011111   2222211                    112344444


Q ss_pred             eeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCC------------ceE
Q 005459          419 VIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQK------------KWR  486 (696)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg------------~w~  486 (696)
                      ..++..                    .....  -.+|+.+.||++|.++|..+++...+++.+..            ...
T Consensus       133 w~~~~~--------------------i~~i~--v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~  190 (443)
T PF04053_consen  133 WETGKL--------------------IRRID--VSAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFE  190 (443)
T ss_dssp             TTT--E--------------------EEEES--S-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEE
T ss_pred             hhHcce--------------------eeEEe--cCCCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceE
Confidence            333321                    11111  11489999999999999999988777665443            222


Q ss_pred             ecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEccC--CEEEEEEcCce
Q 005459          487 VFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYE--DYILVTYRPFD  564 (696)
Q Consensus       487 ~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~llv~~~d~~  564 (696)
                      .    .+|-...|..-+|.++.++-.     +.. +|+.+...   .  ......++.+.-.+...+  +.+.....++.
T Consensus       191 ~----~~E~~~~IkSg~W~~d~fiYt-----T~~-~lkYl~~G---e--~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~  255 (443)
T PF04053_consen  191 L----IHEISERIKSGCWVEDCFIYT-----TSN-HLKYLVNG---E--TGIIAHLDKPLYLLGYLPKENRLYLIDRDGN  255 (443)
T ss_dssp             E----EEEE-S--SEEEEETTEEEEE------TT-EEEEEETT---E--EEEEEE-SS--EEEEEETTTTEEEEE-TT--
T ss_pred             E----EEEecceeEEEEEEcCEEEEE-----cCC-eEEEEEcC---C--cceEEEcCCceEEEEEEccCCEEEEEECCCC
Confidence            2    133234477899999965543     222 67665432   2  222222444334444433  66665555555


Q ss_pred             EEEEEEE
Q 005459          565 VHIFHVK  571 (696)
Q Consensus       565 ~~l~~~~  571 (696)
                      +..|.+.
T Consensus       256 v~~~~ld  262 (443)
T PF04053_consen  256 VISYELD  262 (443)
T ss_dssp             EEEEE--
T ss_pred             EEEEEEC
Confidence            5555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.29  E-value=0.14  Score=59.77  Aligned_cols=304  Identities=13%  Similarity=0.097  Sum_probs=148.4

Q ss_pred             CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459          257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~  336 (696)
                      ...+.+.|..+..-|.++..+|.|.+-|..+ . .+.....        -.+.|.+++||||++.++-...++++-+-+-
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et-~-~~eivg~--------vd~GI~aaswS~Dee~l~liT~~~tll~mT~  138 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPET-L-ELEIVGN--------VDNGISAASWSPDEELLALITGRQTLLFMTK  138 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccc-c-ceeeeee--------ccCceEEEeecCCCcEEEEEeCCcEEEEEec
Confidence            3455588999999999999999999987665 2 2222222        4567999999999999999888777755432


Q ss_pred             cCCeeE--EEeec--ccccceecccccCCCCCCccceecce--eeEEEcCCCceEE-E--EecCCcceEEEEec-ceeee
Q 005459          337 SGCRLM--STIRQ--ISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLY-A--IEEGSSERVLIFSF-GKCCL  406 (696)
Q Consensus       337 ~~~~~~--~~l~~--~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~-~--~~~~~~~~v~~~~~-~~~~~  406 (696)
                       .-.++  ..+..  ...+.+-.+.|-..     +.-..|+  ..+.-.....+-. .  ....|...| .+.- ++..+
T Consensus       139 -~f~~i~E~~L~~d~~~~sk~v~VGwGrk-----eTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~I-sWRgDg~~fA  211 (1265)
T KOG1920|consen  139 -DFEPIAEKPLDADDERKSKFVNVGWGRK-----ETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSI-SWRGDGEYFA  211 (1265)
T ss_pred             -cccchhccccccccccccccceeccccc-----ceeeecchhhhcccccccccccccchhhccCCceE-EEccCCcEEE
Confidence             11111  01100  00000000111000     0000000  0000000000000 0  000011111 1111 22222


Q ss_pred             e----ccCC-CCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC---CccE-E
Q 005459          407 N----RGVS-GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL---HGLI-L  477 (696)
Q Consensus       407 s----~~~d-~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~---dG~i-~  477 (696)
                      .    ...+ ..+++|+-. |.-               +....|..+..|     +++|-|.|..+|+-..   |+.| +
T Consensus       212 Vs~~~~~~~~RkirV~drE-g~L---------------ns~se~~~~l~~-----~LsWkPsgs~iA~iq~~~sd~~Ivf  270 (1265)
T KOG1920|consen  212 VSFVESETGTRKIRVYDRE-GAL---------------NSTSEPVEGLQH-----SLSWKPSGSLIAAIQCKTSDSDIVF  270 (1265)
T ss_pred             EEEEeccCCceeEEEeccc-chh---------------hcccCccccccc-----ceeecCCCCeEeeeeecCCCCcEEE
Confidence            1    1222 566777643 111               111124455544     6899999999998754   4556 8


Q ss_pred             EEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCccceeE-EeecCCc-cEEEEcc-
Q 005459          478 YDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLC-RKSLLAK-PIVMDVY-  552 (696)
Q Consensus       478 w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~-~~~~~~~-~l~~~~~-  552 (696)
                      |..+.-+...|.-...+++..|.+++|.  .++|++-  ........|++|-..+.  ...+. ....+.. ++--+|. 
T Consensus       271 fErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~--~~~~e~~~v~lwt~~Ny--hWYLKq~l~~~~~~~~~W~p~~  346 (1265)
T KOG1920|consen  271 FERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVV--TSNLENSLVQLWTTGNY--HWYLKQELQFSQKALLMWDPVT  346 (1265)
T ss_pred             EecCCccccccccCCcccccchheeeecCCCCceeee--ecccccceEEEEEecCe--EEEEEEEEeccccccccccCCC
Confidence            8877655554544444454458899997  4455542  22233355999976521  11222 2233331 2333454 


Q ss_pred             CCEEEEEEcCceEEEEEEEEecccCCCC---CCeeEeE--EEEEEeecccCCCCce
Q 005459          553 EDYILVTYRPFDVHIFHVKLFGELTPST---TPDLQLS--TVRELSIMTAKSHPAA  603 (696)
Q Consensus       553 ~~~llv~~~d~~~~l~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~p~~  603 (696)
                      ...|.+.+.++...+|++.-..+.+|..   ..+|.-.  .+..++ ..+++.|.|
T Consensus       347 ~~~L~v~~~sG~~~v~~~~~~t~~s~~d~S~~~VIDgs~llvT~ls-~~vvPPPM~  401 (1265)
T KOG1920|consen  347 EKTLHVLRESGQRLVRDFAWTTDRSPNDGSTVYVIDGSRLLVTPLS-LAVVPPPMC  401 (1265)
T ss_pred             ceeEEEEecCCcEEEEEEEEeeeccCCCCceEEEEeCCEEEEecch-hhcCCCCce
Confidence            4456666678888888887544432221   1222222  222333 346777877

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=0.0039  Score=65.74  Aligned_cols=173  Identities=12%  Similarity=0.095  Sum_probs=111.1

Q ss_pred             cccceeEEEeee-CC-CeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCC
Q 005459          129 AEKGLSVSNIVS-DN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP  206 (696)
Q Consensus       129 ~~~~~~v~~~~~-~~-~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~  206 (696)
                      .++...|.++.. ++ +.++.+++|.+++.|+...+......           .                  ....+...
T Consensus       732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t-----------s------------------aCQfTY~a  782 (1034)
T KOG4190|consen  732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT-----------S------------------ACQFTYQA  782 (1034)
T ss_pred             cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc-----------c------------------eeeeEhhh
Confidence            344555555532 33 56888999999999776554332110           0                  00012234


Q ss_pred             CcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee------cCCCCe--EEEEEcCCCcEEEEE-ecC
Q 005459          207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDA--VCASIAPEQQILAVG-TRR  277 (696)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~--v~v~~sp~~~~la~g-~~d  277 (696)
                      |+..|.++.          |..|-+.++  +-|+.+.+||...+..+      ..|...  +.+-=|-+..++..| +..
T Consensus       783 Hkk~i~~ig----------fL~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsae  850 (1034)
T KOG4190|consen  783 HKKPIHDIG----------FLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAE  850 (1034)
T ss_pred             ccCccccee----------eeeccceee--eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccch
Confidence            555666655          566766666  56888999997655433      122222  223234345555444 778


Q ss_pred             CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459          278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR  346 (696)
Q Consensus       278 g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~  346 (696)
                      .+|+++|.+. .+....++....   ++..+-+++++..|.|+.+|+|-.+|.+.+-|..+|+.+.+.+
T Consensus       851 STVKl~DaRs-ce~~~E~kVcna---~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr  915 (1034)
T KOG4190|consen  851 STVKLFDARS-CEWTCELKVCNA---PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR  915 (1034)
T ss_pred             hhheeeeccc-ccceeeEEeccC---CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence            9999999987 676666665221   1234669999999999999999999999999999998776544

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.19  E-value=0.35  Score=52.45  Aligned_cols=68  Identities=19%  Similarity=0.395  Sum_probs=47.1

Q ss_pred             EEEcCCCcEEEEEecC-----------CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc
Q 005459          262 ASIAPEQQILAVGTRR-----------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG  330 (696)
Q Consensus       262 v~~sp~~~~la~g~~d-----------g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~  330 (696)
                      ++.+|.|..||....+           ..|++|+..  +.++..+.-        ..+.+.++.|+.+.+ |+.-..||.
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s--G~ll~~i~w--------~~~~iv~~~wt~~e~-LvvV~~dG~  102 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS--GKLLSSIPW--------DSGRIVGMGWTDDEE-LVVVQSDGT  102 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC--CCEeEEEEE--------CCCCEEEEEECCCCe-EEEEEcCCE
Confidence            4445555555554333           158899865  566666665        338999999998655 555568899


Q ss_pred             EEEEEccCCe
Q 005459          331 LTVWSVSGCR  340 (696)
Q Consensus       331 v~vW~~~~~~  340 (696)
                      ++++|+.|..
T Consensus       103 v~vy~~~G~~  112 (410)
T PF04841_consen  103 VRVYDLFGEF  112 (410)
T ss_pred             EEEEeCCCce
Confidence            9999998765

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.12  E-value=0.15  Score=55.25  Aligned_cols=67  Identities=13%  Similarity=0.159  Sum_probs=44.0

Q ss_pred             CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccCCeeEEEe
Q 005459          268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTI  345 (696)
Q Consensus       268 ~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~~~~~~~l  345 (696)
                      +..+.+++.+|.+..+|.++ ++.+-....         .+.+.+   +|  .+..+..+..++.+.-.|..+++.+...
T Consensus       120 ~~~v~v~~~~g~l~ald~~t-G~~~W~~~~---------~~~~~s---sP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~  186 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAED-GEVAWQTKV---------AGEALS---RPVVSDGLVLVHTSNGMLQALNESDGAVKWTV  186 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCC-CCCcccccC---------CCceec---CCEEECCEEEEECCCCEEEEEEccCCCEeeee
Confidence            55677788999999999887 554433332         111111   12  2345666777899999999999888776


Q ss_pred             ec
Q 005459          346 RQ  347 (696)
Q Consensus       346 ~~  347 (696)
                      ..
T Consensus       187 ~~  188 (394)
T PRK11138        187 NL  188 (394)
T ss_pred             cC
Confidence            53

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.08  E-value=0.25  Score=52.59  Aligned_cols=76  Identities=13%  Similarity=0.171  Sum_probs=48.0

Q ss_pred             CCceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHH----------H-hh-cccccEEEEcCCCcEEEEEec
Q 005459           20 SSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSES----------V-QR-EGENLQAVWSPDTKLIAVVTS   87 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~s----------l-~~-~G~~~~v~wsPDg~~lav~t~   87 (696)
                      .......+||||+.+|.+.++.|.+++.. .+ ....+...-+.          . ++ .+....+.|||||++||....
T Consensus        43 ~~~~~~~~sP~g~~~~~v~~~nly~~~~~-~~-~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   43 PKLQDAKWSPDGKYIAFVRDNNLYLRDLA-TG-QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             TTBSEEEE-SSSTEEEEEETTEEEEESST-TS-EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             cccccceeecCCCeeEEEecCceEEEECC-CC-CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            35666889999999999999999999874 32 22222221100          1 12 455678999999999998654


Q ss_pred             C-cEEEEEEEE
Q 005459           88 S-LYLHIFKVQ   97 (696)
Q Consensus        88 d-g~l~l~~l~   97 (696)
                      | ..++.+.+.
T Consensus       121 d~~~v~~~~~~  131 (353)
T PF00930_consen  121 DEREVPEYPLP  131 (353)
T ss_dssp             E-TTS-EEEEE
T ss_pred             CCcCCceEEee
Confidence            4 446666654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.0024  Score=68.88  Aligned_cols=93  Identities=20%  Similarity=0.272  Sum_probs=71.3

Q ss_pred             cEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEEccCC
Q 005459          210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES  288 (696)
Q Consensus       210 ~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v-~v~~sp~~~~la~g~~dg~v~vw~~~~~  288 (696)
                      .|.-++|+|.+..++..+.+|.+++...+  --|+|+...+    + .+.+ +++|.|||++||+|-.||+|++-|+.+ 
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p----~-~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~-   93 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIP----G-ENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK-   93 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCC----C-CccceeeeecCCCCEEEEEecCCeEEEEEccC-
Confidence            47788999999999999999999887766  5678887644    2 2344 699999999999999999999999998 


Q ss_pred             CceeeEEeeccCCCCCCCCCCeEEEEECC
Q 005459          289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTP  317 (696)
Q Consensus       289 ~~~~~~~~~~~~~~~~~h~g~V~~l~~sp  317 (696)
                      +..+.....     +  -..+|.++-|+|
T Consensus        94 ~~~l~~~~~-----s--~e~~is~~~w~~  115 (665)
T KOG4640|consen   94 GGRLVSFLF-----S--VETDISKGIWDR  115 (665)
T ss_pred             CCceecccc-----c--cccchheeeccc
Confidence            443332111     0  345688888874

>smart00320 WD40 WD40 repeats

Probab=97.07  E-value=0.0016  Score=43.02  Aligned_cols=30  Identities=30%  Similarity=0.691  Sum_probs=28.7

Q ss_pred             CCCCeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459          306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWS  335 (696)
Q Consensus       306 h~g~V~~l~~spdg~~lasg~~Dg~v~vW~  335 (696)
                      |...|.+++|+|++..+++++.|+.+++|+
T Consensus        11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.07  E-value=0.0015  Score=65.34  Aligned_cols=114  Identities=15%  Similarity=0.140  Sum_probs=81.8

Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeec---cee----cCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCce---e
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKI---DKE----LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASL---I  292 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~---~~~----~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~---~  292 (696)
                      .|...+.+++.+...+.|...|+...   ..|    ..|..+++ +..-. +++.|.+.+.+|+|++||.+. .+.   +
T Consensus       259 Qf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V  337 (425)
T KOG2695|consen  259 QFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSV  337 (425)
T ss_pred             HhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccce
Confidence            35556778888888888888887643   112    34777777 65555 677888888999999999987 555   5


Q ss_pred             eEEeeccCCCCCCCCCCeEEE--EECCCCCeEEEEEcCCcEEEEEccCCeeEEEeec
Q 005459          293 RTVSLYDWGYSMDDTGPVSCI--AWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ  347 (696)
Q Consensus       293 ~~~~~~~~~~~~~h~g~V~~l--~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~  347 (696)
                      .+..+        |...-.-+  -..+....+++++.|.-.|+|++..+.++++++-
T Consensus       338 ~qYeG--------HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  338 MQYEG--------HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             eeeec--------ccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence            55555        53322222  2234556788899999999999999999999875

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.04  E-value=0.0019  Score=66.78  Aligned_cols=212  Identities=12%  Similarity=0.147  Sum_probs=127.7

Q ss_pred             CCCeEEEEEcCCCcEEEEEecCCeEEEEEccC-C-CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CCcEE
Q 005459          256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAE-S-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLT  332 (696)
Q Consensus       256 ~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~-~-~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~  332 (696)
                      |.+.+.-.+-...+++.+++-||.++.|.-.. . .+.+..+..        |.+.|.+++-|-||..++|... |+.++
T Consensus         8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFra--------HL~~I~sl~~S~dg~L~~Sv~d~Dhs~K   79 (558)
T KOG0882|consen    8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRA--------HLGVILSLAVSYDGWLFRSVEDPDHSVK   79 (558)
T ss_pred             ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHH--------HHHHHHhhhccccceeEeeccCccccee
Confidence            55666633445678899999999999998543 1 133444555        8999999999999999999888 99999


Q ss_pred             EEEccCCeeEEEeecccccceecccccCCCCCCccceec----ceeeEEEcCCCc--eEEEEecCCcceEEEEec---ce
Q 005459          333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS----GTSMMQWDEYGY--RLYAIEEGSSERVLIFSF---GK  403 (696)
Q Consensus       333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~s----g~~~~~W~~~~~--~l~~~~~~~~~~v~~~~~---~~  403 (696)
                      ++|+..-..+.-++-.-....-.+..+|...  -..++-    ...+.+.|..+.  +....-.-|..+|..+..   ++
T Consensus        80 vfDvEn~DminmiKL~~lPg~a~wv~skGd~--~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D  157 (558)
T KOG0882|consen   80 VFDVENFDMINMIKLVDLPGFAEWVTSKGDK--ISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD  157 (558)
T ss_pred             EEEeeccchhhhcccccCCCceEEecCCCCe--eeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence            9999776544322211000000011111110  001110    014455555432  333333447777744433   88


Q ss_pred             eeeeccCCCCceeeeeee----cCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EE
Q 005459          404 CCLNRGVSGMTYARQVIY----GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY  478 (696)
Q Consensus       404 ~~~s~~~d~~~~~w~~~~----~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w  478 (696)
                      +++|....|.+..|....    .+.++...-.+++.         .-.+........++.|||+|..+++-+.|..+ ++
T Consensus       158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd---------Ly~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F  228 (558)
T KOG0882|consen  158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETD---------LYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGF  228 (558)
T ss_pred             ceeeccccceeEeecCCCcccCccccccccccccch---------hhcccccccCccceEEccccCcccccCcccEEEEE
Confidence            889988899999998542    11111111110000         00111223346789999999999999999999 99


Q ss_pred             EccCCceE
Q 005459          479 DIRQKKWR  486 (696)
Q Consensus       479 ~~~sg~w~  486 (696)
                      ...+|+..
T Consensus       229 ~~KtGklv  236 (558)
T KOG0882|consen  229 VFKTGKLV  236 (558)
T ss_pred             Eeccchhh
Confidence            99999754

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.91  E-value=0.088  Score=56.05  Aligned_cols=265  Identities=16%  Similarity=0.142  Sum_probs=120.5

Q ss_pred             CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecc
Q 005459          277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP  356 (696)
Q Consensus       277 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~  356 (696)
                      .+.+.+||+.+ ++ +..+..        ..+.+....|||||+.+|-... +.|.+++..++. ...|...|...+..-
T Consensus        22 ~~~y~i~d~~~-~~-~~~l~~--------~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~-~~~lT~dg~~~i~nG   89 (353)
T PF00930_consen   22 KGDYYIYDIET-GE-ITPLTP--------PPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQ-ETQLTTDGEPGIYNG   89 (353)
T ss_dssp             EEEEEEEETTT-TE-EEESS---------EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSE-EEESES--TTTEEES
T ss_pred             ceeEEEEecCC-Cc-eEECcC--------CccccccceeecCCCeeEEEec-CceEEEECCCCC-eEEeccccceeEEcC
Confidence            36788999887 33 332332        2467899999999999998865 889999987774 333333222211100


Q ss_pred             cccCCCCCCccceecceeeEEEcCCCceEEEEecC-CcceEEEEe-c--c----------eeeeeccCCCCceeeeeeec
Q 005459          357 IVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEG-SSERVLIFS-F--G----------KCCLNRGVSGMTYARQVIYG  422 (696)
Q Consensus       357 ~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~-~~~~v~~~~-~--~----------~~~~s~~~d~~~~~w~~~~~  422 (696)
                      .  |+= --.+.++.....+-|++++..+...... ..-+.+.+. +  .          +.-..|.....+.++.+.-.
T Consensus        90 ~--~dw-vyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~  166 (353)
T PF00930_consen   90 V--PDW-VYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLA  166 (353)
T ss_dssp             B----H-HHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESS
T ss_pred             c--cce-eccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECC
Confidence            0  000 0001112223567788877766554322 111111111 1  1          11223444444444333222


Q ss_pred             CCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEE--EEeCCc---cE-EEEccCCceEecCCccceee
Q 005459          423 EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLA--VAGLHG---LI-LYDIRQKKWRVFGDITQEQK  496 (696)
Q Consensus       423 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la--~ag~dG---~i-~w~~~sg~w~~f~~~~~e~~  496 (696)
                      +.+.             ..+..|........-+..+.|++|++.|+  ...++.   .+ ++|..+++-++...+..+.=
T Consensus       167 ~~~~-------------~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~W  233 (353)
T PF00930_consen  167 SGKT-------------TELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGW  233 (353)
T ss_dssp             STCC-------------CEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSS
T ss_pred             CCcE-------------EEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcc
Confidence            2210             01122222223344588899999999433  344443   23 77887776554332222221


Q ss_pred             eEEE-eEeee---CcEEEEEEeecCCCeEEEEEeeCC-CCCccceeE-EeecCCccEEEEccCCEEEEEEc---CceEEE
Q 005459          497 IQSK-GLLWL---GKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLC-RKSLLAKPIVMDVYEDYILVTYR---PFDVHI  567 (696)
Q Consensus       497 ~~v~-~~~w~---~~~lv~~~~~~~~~~~~lr~y~~~-~l~~~~~~~-~~~~~~~~l~~~~~~~~llv~~~---d~~~~l  567 (696)
                      +... .+.+.   ++.++..  .+.++-.+|-+++.+ .... .+-. ...+. .++.++..++.+.....   ...-.|
T Consensus       234 v~~~~~~~~~~~~~~~~l~~--s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~-~i~~~d~~~~~iyf~a~~~~p~~r~l  309 (353)
T PF00930_consen  234 VDVYDPPHFLGPDGNEFLWI--SERDGYRHLYLYDLDGGKPR-QLTSGDWEVT-SILGWDEDNNRIYFTANGDNPGERHL  309 (353)
T ss_dssp             SSSSSEEEE-TTTSSEEEEE--EETTSSEEEEEEETTSSEEE-ESS-SSS-EE-EEEEEECTSSEEEEEESSGGTTSBEE
T ss_pred             eeeecccccccCCCCEEEEE--EEcCCCcEEEEEccccccee-ccccCceeec-ccceEcCCCCEEEEEecCCCCCceEE
Confidence            2122 33333   3444443  234556778888775 1100 0000 01111 13555666665554222   235677


Q ss_pred             EEEEEe
Q 005459          568 FHVKLF  573 (696)
Q Consensus       568 ~~~~~~  573 (696)
                      |.+.++
T Consensus       310 Y~v~~~  315 (353)
T PF00930_consen  310 YRVSLD  315 (353)
T ss_dssp             EEEETT
T ss_pred             EEEEeC
Confidence            777654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.87  E-value=0.25  Score=53.50  Aligned_cols=75  Identities=12%  Similarity=0.031  Sum_probs=41.1

Q ss_pred             cEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccCCeeEEEe
Q 005459          269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTI  345 (696)
Q Consensus       269 ~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~~~~~~~l  345 (696)
                      ..+.++..+|.+...|..+ ++..-....... ...........+.-+|  .+..+..++.+|.+...|..+++.+...
T Consensus       206 ~~v~~~~~~g~v~a~d~~~-G~~~W~~~~~~~-~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~  282 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQ-GQLIWQQRISQP-TGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR  282 (394)
T ss_pred             CEEEEEcCCCEEEEEEccC-ChhhheeccccC-CCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence            3566778889998888877 543322221000 0000000111122233  3445666777899999999988766554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=96.82  E-value=0.31  Score=49.57  Aligned_cols=54  Identities=24%  Similarity=0.323  Sum_probs=37.9

Q ss_pred             EEEcCCCcEEEEEe-cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459          262 ASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK  327 (696)
Q Consensus       262 v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~  327 (696)
                      |++++++.++|+.| ..|.+.+||..+ ++.+.....          ..+..++-.+++ +++|.+.
T Consensus       222 Ia~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l----------~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  222 IAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPL----------PDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             EEEeCCCCEEEEECCCCCEEEEEECCC-CCEeecccc----------CceeeeeecCCc-eEEeCCC
Confidence            99999999887666 467899999888 776654444          235666666676 4554443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.77  E-value=0.033  Score=47.30  Aligned_cols=94  Identities=16%  Similarity=0.243  Sum_probs=59.6

Q ss_pred             EEeCCc-EEEEeeccCCceeeeeeecc-eecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459          226 LYSNGQ-LMSCSVSKKGLKLAEFIKID-KELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS  303 (696)
Q Consensus       226 ~s~dG~-~~~~~~~d~~~~~~~~~~~~-~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~  303 (696)
                      +..||+ .+++++.|+.|++++..... ....+...+.+.-... ..+|.|.++|+|-+|+-..  +..+ .+.      
T Consensus        10 ~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWR-iKS------   79 (111)
T PF14783_consen   10 FDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWR-IKS------   79 (111)
T ss_pred             cCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeee-ecc------
Confidence            344554 78888999999998754321 1133344555443333 6799999999999998532  3333 222      


Q ss_pred             CCCCCCeEEEEECC---CCC-eEEEEEcCCcEE
Q 005459          304 MDDTGPVSCIAWTP---DNS-AFAVGWKSRGLT  332 (696)
Q Consensus       304 ~~h~g~V~~l~~sp---dg~-~lasg~~Dg~v~  332 (696)
                         +..+.++++..   ||. -|++||.+|.|-
T Consensus        80 ---K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   80 ---KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ---CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence               23366666544   343 799999999874

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.76  E-value=0.72  Score=46.16  Aligned_cols=128  Identities=10%  Similarity=0.083  Sum_probs=71.6

Q ss_pred             EEe-CCcEEEEeeccCCceeeeeeeccee-cCCCCeEEEEEc-CCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC
Q 005459          226 LYS-NGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVCASIA-PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY  302 (696)
Q Consensus       226 ~s~-dG~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~v~v~~s-p~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~  302 (696)
                      +.+ +|+++++....+.+..++....+.. .....+.-+++. ++++++++ ..++ +.++|..+ ++.........   
T Consensus         7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~-~~~~-~~~~d~~~-g~~~~~~~~~~---   80 (246)
T PF08450_consen    7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVA-DSGG-IAVVDPDT-GKVTVLADLPD---   80 (246)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEE-ETTC-EEEEETTT-TEEEEEEEEET---
T ss_pred             EECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEE-EcCc-eEEEecCC-CcEEEEeeccC---
Confidence            444 6777777667777777776554332 111235558888 67655554 4444 45558776 43333222210   


Q ss_pred             CCCCCCCeEEEEECCCCCeEEEEEcC--------CcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459          303 SMDDTGPVSCIAWTPDNSAFAVGWKS--------RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       303 ~~~h~g~V~~l~~spdg~~lasg~~D--------g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      ........+++++.|||+..++....        |.+..++.. ++......+  ....+.++|+|++
T Consensus        81 ~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pNGi~~s~dg  145 (246)
T PF08450_consen   81 GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPNGIAFSPDG  145 (246)
T ss_dssp             TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEEEEEEETTS
T ss_pred             CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cccccceEECCcc
Confidence            00023468899999999977776543        446666666 343322222  3346778888887

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=96.68  E-value=0.01  Score=65.87  Aligned_cols=104  Identities=20%  Similarity=0.316  Sum_probs=78.3

Q ss_pred             EEEcCCCcEEEEEe----cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459          262 ASIAPEQQILAVGT----RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS  337 (696)
Q Consensus       262 v~~sp~~~~la~g~----~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~  337 (696)
                      .+|+|...++|+++    ..|.|.+|- ++ +++-+-..         ..-.+++++|.|.--.||+||+-|.+.+|...
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dt-GEPqr~Vt---------~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~   89 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DT-GEPQRDVT---------YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTN   89 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cC-CCCCcccc---------cceehhhhccChHHHHHhhccccceeEEEecC
Confidence            78999999999887    468888884 44 44322111         12235779999999999999999999999987


Q ss_pred             CCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCC
Q 005459          338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY  381 (696)
Q Consensus       338 ~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~  381 (696)
                      +.+ .++...-|...+..+.|||+|    ..++++.   .+..|..+
T Consensus        90 ~~e-~htv~~th~a~i~~l~wS~~G----~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   90 TTE-THTVVETHPAPIQGLDWSHDG----TVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             Cce-eeeeccCCCCCceeEEecCCC----CeEEEcCCCceeEEEEee
Confidence            765 455555447889999999999    8888776   67778654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.59  E-value=0.12  Score=51.29  Aligned_cols=112  Identities=16%  Similarity=0.110  Sum_probs=63.6

Q ss_pred             CCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEe
Q 005459          266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI  345 (696)
Q Consensus       266 p~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l  345 (696)
                      +++..+.+++.++.+..||..+ ++.+-.....         +++.... ..++..++++..|+.+..+|..+++.+.+.
T Consensus        34 ~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~~---------~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~  102 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYALDAKT-GKVLWRFDLP---------GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSI  102 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTT-SEEEEEEECS---------SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred             EeCCEEEEEcCCCEEEEEECCC-CCEEEEeecc---------cccccee-eecccccccccceeeeEecccCCcceeeee
Confidence            3556666778999999999988 6665545431         1111101 225566777778889999999999888874


Q ss_pred             -ecccc--cceecccccCCCCCCccceecc--eeeEEEcCCCceEEEEecC
Q 005459          346 -RQISL--SSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEG  391 (696)
Q Consensus       346 -~~~~~--~~v~~~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~~~~~  391 (696)
                       .....  ...........+   ...++..  ..+...++++++++.....
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen  103 YLTSSPPAGVRSSSSPAVDG---DRLYVGTSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             EE-SSCTCSTB--SEEEEET---TEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred             ccccccccccccccCceEec---CEEEEEeccCcEEEEecCCCcEEEEeec
Confidence             32200  000111111112   0222222  2778888888877665543

...

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=96.51  E-value=0.035  Score=62.57  Aligned_cols=175  Identities=17%  Similarity=0.115  Sum_probs=115.3

Q ss_pred             CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459          267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR  346 (696)
Q Consensus       267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~  346 (696)
                      +...+..|+--..+..+|+++ .+..+....        ..+.|.-|+.  +++.|++|...|+|.+=|..+.+.++++.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~-~~e~r~~~v--------~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~  214 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNT-EKETRTTNV--------SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD  214 (1118)
T ss_pred             CCcceeecchhhheeeeeccc-ceeeeeeec--------cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee
Confidence            344566666666777888876 555555554        3445777764  67899999999999999999999999999


Q ss_pred             cccccceecccccCCCCCCccceecce------------eeEEEcCCCceEEEEecCCcc-eEEEEec--ceeeeeccCC
Q 005459          347 QISLSSISSPIVKPNQDCKYEPLMSGT------------SMMQWDEYGYRLYAIEEGSSE-RVLIFSF--GKCCLNRGVS  411 (696)
Q Consensus       347 ~~~~~~v~~~~~sp~~~~~~~~l~sg~------------~~~~W~~~~~~l~~~~~~~~~-~v~~~~~--~~~~~s~~~d  411 (696)
                      .| ++.++....  .|    +.+++.+            -+++||++..+.+.-..-+.+ .++.|.|  ...++..+..
T Consensus       215 aH-s~siSDfDv--~G----NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~s  287 (1118)
T KOG1275|consen  215 AH-SGSISDFDV--QG----NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQS  287 (1118)
T ss_pred             cc-ccceeeeec--cC----CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecc
Confidence            88 666665433  33    4444433            356788877665544332222 3456666  4555556666


Q ss_pred             CCceeeeeeecCCeEEEEecCCCCcceeEEeecCe---eeecCCCc-eEEEEEcCCCCEEEEEeCCccE-EEE
Q 005459          412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV---SYISQNWP-VQHVAASKDGMFLAVAGLHGLI-LYD  479 (696)
Q Consensus       412 ~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~-I~~va~s~dG~~la~ag~dG~i-~w~  479 (696)
                      |..++-+...-..                    |.   .+..-+.+ |....+|++|..+|.|-.+|.+ +|.
T Consensus       288 Gq~q~vd~~~lsN--------------------P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  288 GQFQFVDTATLSN--------------------PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cceeeccccccCC--------------------CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            6666544222222                    11   11122333 8999999999999999999999 997

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=96.50  E-value=0.023  Score=61.42  Aligned_cols=73  Identities=14%  Similarity=0.160  Sum_probs=54.5

Q ss_pred             CceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEec
Q 005459           21 SQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT   99 (696)
Q Consensus        21 ~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~   99 (696)
                      .....++||+.+.|+.+ .|++|.+||.. .++  ....+..      =-...++|+|||.++++++..|.|.+||+..+
T Consensus       261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~-~~~--t~~~ka~------~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  261 QVICCARSPSEDKLVLGCEDGSIILYDTT-RGV--TLLAKAE------FIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cceEEecCcccceEEEEecCCeEEEEEcC-CCe--eeeeeec------ccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            45557789998777666 78999999986 332  2222221      11358999999999999999999999999876


Q ss_pred             Ccc
Q 005459          100 EKS  102 (696)
Q Consensus       100 ~~~  102 (696)
                      ..+
T Consensus       332 pi~  334 (545)
T PF11768_consen  332 PIK  334 (545)
T ss_pred             ccc
Confidence            643

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.50  E-value=0.075  Score=57.55  Aligned_cols=110  Identities=14%  Similarity=0.160  Sum_probs=62.8

Q ss_pred             EEEeCCcEEEEE---cc--CeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEe-cCcEEEEEEEEec
Q 005459           26 YFKVNNGLLLIA---SP--CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQIT   99 (696)
Q Consensus        26 ~fs~dg~lla~~---~~--~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t-~dg~l~l~~l~~~   99 (696)
                      .++|+++.++-.   ..  ..+.+++.+.....        ..+...|.+..-.|||||+.||... .+|...||-++..
T Consensus       199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~--------~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP--------VILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             ccCcCCCceEEEEEecCCCceEEEEeccCCccc--------eeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            478888866544   22  35888888632211        1122357778899999999888754 5676666655433


Q ss_pred             CcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCC---cEEEEecCCcc
Q 005459          100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG---SLYSISWKGEF  163 (696)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g---~i~~~~w~~~~  163 (696)
                      .....-         +       ...   .+.+ .--++++||+.|+..++.+   .|.++++++..
T Consensus       271 ~~~~~~---------L-------t~~---~gi~-~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~  317 (425)
T COG0823         271 GKNLPR---------L-------TNG---FGIN-TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ  317 (425)
T ss_pred             CCccee---------c-------ccC---Cccc-cCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence            321100         0       000   0000 1235778899888877654   56666666544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.47  E-value=0.23  Score=55.97  Aligned_cols=121  Identities=11%  Similarity=0.177  Sum_probs=72.9

Q ss_pred             cEEEEEEccCcceEEEEEeCCcEEEEeec---cCCceeeeeeecceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEc
Q 005459          210 AIIWLELCLPMRLLFVLYSNGQLMSCSVS---KKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDL  285 (696)
Q Consensus       210 ~i~~~~~~~~~~~~~~~s~dG~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~  285 (696)
                      ++..+..+......++.+.+|.++..-++   |...++-...     .+ ..+++ +++..+++.+.....-..|.+|.+
T Consensus       127 p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~-----~~-~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l  200 (933)
T KOG2114|consen  127 PASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSH-----RG-KEPITGLALRSDGKSVLFVATTEQVMLYSL  200 (933)
T ss_pred             cceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeec-----cC-CCCceeeEEecCCceeEEEEecceeEEEEe
Confidence            34444444445555555666655554331   1111111111     22 45666 999999888555555678999999


Q ss_pred             cCCCce-eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459          286 AESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR  346 (696)
Q Consensus       286 ~~~~~~-~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~  346 (696)
                      .. ..+ ..++..        |..+++|-+|++-...+++|+. ..+.+++..+...-.++.
T Consensus       201 ~g-r~p~~~~ld~--------~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  201 SG-RTPSLKVLDN--------NGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             cC-CCcceeeecc--------CCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence            85 332 233444        7788999999986664555554 589999988766555555

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.31  E-value=0.89  Score=48.84  Aligned_cols=236  Identities=14%  Similarity=0.079  Sum_probs=111.1

Q ss_pred             ccEEEEcCCCcEEEEEecCcEEEEEEEEecCccc---ccCC---------CCCCCceeeee--------eEEEeeecccc
Q 005459           70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI---QIGG---------KQPSGLFFIKI--------SLVLNEQLPFA  129 (696)
Q Consensus        70 ~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~---~~~~---------~~~~~~~~~~~--------~l~~~~~~~~~  129 (696)
                      +..+.|+++..-||+++..|.+.||+....+...   ....         ++.....+.++        +-.+.-...+.
T Consensus         4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~   83 (395)
T PF08596_consen    4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD   83 (395)
T ss_dssp             EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred             EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence            5689999999999999999999999987654221   0000         00001112211        11111112234


Q ss_pred             ccceeEEEeeeCC-CeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCc
Q 005459          130 EKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPIS  208 (696)
Q Consensus       130 ~~~~~v~~~~~~~-~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~  208 (696)
                      ...+.|+++...+ ..+++|..+|.+.+++..+....-.. +        ++.                   ........
T Consensus        84 ~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~-~--------i~~-------------------~~~~~~~~  135 (395)
T PF08596_consen   84 AKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNE-N--------IRE-------------------SFLSKSSS  135 (395)
T ss_dssp             --S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEE-E--------GGG---------------------T-SS--
T ss_pred             ccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeec-c--------ccc-------------------cccccccc
Confidence            4567888887644 78899999999999987654322110 0        110                   00011223


Q ss_pred             ccEEEEEEcc-----Cc---ceEEEEEeCCcEEEEeec-----cCCceeeeeeecceecCCCCeEE--EEEcCC------
Q 005459          209 SAIIWLELCL-----PM---RLLFVLYSNGQLMSCSVS-----KKGLKLAEFIKIDKELGSGDAVC--ASIAPE------  267 (696)
Q Consensus       209 ~~i~~~~~~~-----~~---~~~~~~s~dG~~~~~~~~-----d~~~~~~~~~~~~~~~~~~~~v~--v~~sp~------  267 (696)
                      .+++.++|..     +.   ..+++.+..|++++..-.     ..++...+..     ..+.+.+.  ..|+.+      
T Consensus       136 ~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-----~~~~~~i~~I~~i~~~~G~~a~  210 (395)
T PF08596_consen  136 SYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-----TNHDSPILSIIPINADTGESAL  210 (395)
T ss_dssp             --EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE-------SS----EEEEEETTT--B-B
T ss_pred             cCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-----ccCCCceEEEEEEECCCCCccc
Confidence            4455565542     11   234445556655443211     1111111111     12222222  233322      


Q ss_pred             --------------CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEE-----CCCCCeEEEEEcC
Q 005459          268 --------------QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW-----TPDNSAFAVGWKS  328 (696)
Q Consensus       268 --------------~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~-----spdg~~lasg~~D  328 (696)
                                    -.-+++.+.+..+|++...+ .+..+....        ..-....+.+     ...+..|++-..|
T Consensus       211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~-~k~~~K~~~--------~~~~~~~~~vv~~~~~~~~~~Lv~l~~~  281 (395)
T PF08596_consen  211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK-SKGAHKSFD--------DPFLCSSASVVPTISRNGGYCLVCLFNN  281 (395)
T ss_dssp             -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT----EEEEE-S--------S-EEEEEEEEEEEE-EEEEEEEEEEETT
T ss_pred             CchhHhhccccCCCcCcEEEEEcccceEEEeCCC-Ccccceeec--------cccccceEEEEeecccCCceEEEEEECC
Confidence                          01245556678899998876 443332222        2223344455     3467889999999


Q ss_pred             CcEEEEEccCCeeEEEeec
Q 005459          329 RGLTVWSVSGCRLMSTIRQ  347 (696)
Q Consensus       329 g~v~vW~~~~~~~~~~l~~  347 (696)
                      |.++++++.+-+.+..++-
T Consensus       282 G~i~i~SLP~Lkei~~~~l  300 (395)
T PF08596_consen  282 GSIRIYSLPSLKEIKSVSL  300 (395)
T ss_dssp             SEEEEEETTT--EEEEEE-
T ss_pred             CcEEEEECCCchHhhcccC
Confidence            9999999998877766553

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.24  E-value=3.3  Score=47.94  Aligned_cols=53  Identities=8%  Similarity=0.078  Sum_probs=38.7

Q ss_pred             EEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEEEEec
Q 005459          521 YELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFG  574 (696)
Q Consensus       521 ~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~~~  574 (696)
                      +.|-+|.-+.+.+-.+.+.+.+.+.|+++..+.+.+++ +-+..++||+++.+.
T Consensus       807 GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA-~In~~vrLye~t~~~  859 (1096)
T KOG1897|consen  807 GRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLA-GINQSVRLYEWTTER  859 (1096)
T ss_pred             ceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEE-ecCcEEEEEEccccc
Confidence            45666665443333467888899999999998888777 446799999997653

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.17  E-value=0.0037  Score=69.58  Aligned_cols=179  Identities=13%  Similarity=0.112  Sum_probs=111.4

Q ss_pred             CeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC--CcEEEEE
Q 005459          258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS--RGLTVWS  335 (696)
Q Consensus       258 ~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D--g~v~vW~  335 (696)
                      .-+|++|+-+.+.|++|+-.|.|++|++.+ +........        |..+|+-+.=|-||..+.+.+.-  --..+|+
T Consensus      1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~nc--------H~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNC--------HQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             ceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccc--------cccccccccccCCcceeeeeccccCchHHHhc
Confidence            446799999999999999999999999998 666666677        99999999999999977765432  2467898


Q ss_pred             ccC-CeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCC
Q 005459          336 VSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVS  411 (696)
Q Consensus       336 ~~~-~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d  411 (696)
                      +.. +...+++.+.     .++.|+...    +.-+-|.   ...++|.+++..+.+.-.   .....+..+.+++-+++
T Consensus      1174 ~~s~~~~~Hsf~ed-----~~vkFsn~~----q~r~~gt~~d~a~~YDvqT~~~l~tylt---~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDED-----KAVKFSNSL----QFRALGTEADDALLYDVQTCSPLQTYLT---DTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred             cccccCcccccccc-----ceeehhhhH----HHHHhcccccceEEEecccCcHHHHhcC---cchhhhhhccccccCCC
Confidence            753 3334455442     234454332    1111122   677888888766554211   22333445556666666


Q ss_pred             CCceee-----eeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccC
Q 005459          412 GMTYAR-----QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQ  482 (696)
Q Consensus       412 ~~~~~w-----~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~s  482 (696)
                      .+..+|     |+...+.                    ...|..-+ ---.-.|.|.|..+++-++    +||++|
T Consensus      1242 D~LIlndGvLWDvR~~~a--------------------Ih~FD~ft-~~~~G~FHP~g~eVIINSE----IwD~RT 1292 (1516)
T KOG1832|consen 1242 DTLILNDGVLWDVRIPEA--------------------IHRFDQFT-DYGGGGFHPSGNEVIINSE----IWDMRT 1292 (1516)
T ss_pred             cceEeeCceeeeeccHHH--------------------Hhhhhhhe-ecccccccCCCceEEeech----hhhhHH
Confidence            665544     4332211                    11111111 0112368999998887654    899877

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.15  E-value=1  Score=46.48  Aligned_cols=165  Identities=16%  Similarity=0.112  Sum_probs=87.0

Q ss_pred             EccCcceEEEEEeCCcEEEEeec-cCCceeeeeeecceecCCCCeEE--EEEcCCCcEEEEEecCCeEEEEEccCCC-ce
Q 005459          216 LCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKELGSGDAVC--ASIAPEQQILAVGTRRGVVELYDLAESA-SL  291 (696)
Q Consensus       216 ~~~~~~~~~~~s~dG~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~v~--v~~sp~~~~la~g~~dg~v~vw~~~~~~-~~  291 (696)
                      |......|..+..||+++-..-. ++....  ..+ +......+++.  -++..++..+..-+-+|.|+--++.... +.
T Consensus       143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~--~~t-~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~  219 (342)
T PF06433_consen  143 YPSGNRGFSMLCGDGSLLTVTLDADGKEAQ--KST-KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF  219 (342)
T ss_dssp             EEEETTEEEEEETTSCEEEEEETSTSSEEE--EEE-EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE
T ss_pred             EecCCCceEEEecCCceEEEEECCCCCEeE--eec-cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc
Confidence            33333456667777777666554 343331  111 11111123332  4555566666667888988887776522 22


Q ss_pred             eeEEeec---cCCCCCCCCCCeEEEEECCCCCeEEEEE---c-----CC--cEEEEEccCCeeEEEeecccccceecccc
Q 005459          292 IRTVSLY---DWGYSMDDTGPVSCIAWTPDNSAFAVGW---K-----SR--GLTVWSVSGCRLMSTIRQISLSSISSPIV  358 (696)
Q Consensus       292 ~~~~~~~---~~~~~~~h~g~V~~l~~spdg~~lasg~---~-----Dg--~v~vW~~~~~~~~~~l~~~~~~~v~~~~~  358 (696)
                      ...+...   +....+ ..|.-.-+++++..+.|.+--   .     |+  .|.++|+.+++.+..+.-.  ..+.+++.
T Consensus       220 ~~~~~~~t~~e~~~~W-rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~V  296 (342)
T PF06433_consen  220 GKPWSLLTDAEKADGW-RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAV  296 (342)
T ss_dssp             EEEEESS-HHHHHTTE-EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEE
T ss_pred             cCcccccCccccccCc-CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEE
Confidence            2222210   000000 134445577777666555531   1     22  4777789999999888743  24678888


Q ss_pred             cCCCCCCccceec---c--eeeEEEcCCCceEEEEec
Q 005459          359 KPNQDCKYEPLMS---G--TSMMQWDEYGYRLYAIEE  390 (696)
Q Consensus       359 sp~~~~~~~~l~s---g--~~~~~W~~~~~~l~~~~~  390 (696)
                      +.+.    ++++-   +  ..+.++|+.+++++...+
T Consensus       297 sqd~----~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  297 SQDD----KPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             ESSS----S-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             ccCC----CcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            8877    54442   2  268889999998887764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.10  E-value=0.49  Score=46.85  Aligned_cols=213  Identities=18%  Similarity=0.186  Sum_probs=110.4

Q ss_pred             EEcCCCcEEEEEec-----CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459          263 SIAPEQQILAVGTR-----RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS  337 (696)
Q Consensus       263 ~~sp~~~~la~g~~-----dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~  337 (696)
                      .|||||++|-..-.     -|.|-|||.+..-+.+.++..        |.-.-..|.|.+||+.|+.+.  |+|..---+
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t--------~GiGpHev~lm~DGrtlvvan--GGIethpdf  189 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFST--------HGIGPHEVTLMADGRTLVVAN--GGIETHPDF  189 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccccc--------CCcCcceeEEecCCcEEEEeC--Cceeccccc
Confidence            58999998876433     378999999864455666666        655567899999999998764  677666333


Q ss_pred             CCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceee
Q 005459          338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYAR  417 (696)
Q Consensus       338 ~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w  417 (696)
                      +...+. |..          .        ++     +..+-+..+++++....-. ...-.++. +. +.-+.|+++  |
T Consensus       190 gR~~lN-lds----------M--------eP-----Slvlld~atG~liekh~Lp-~~l~~lSi-RH-ld~g~dgtv--w  240 (366)
T COG3490         190 GRTELN-LDS----------M--------EP-----SLVLLDAATGNLIEKHTLP-ASLRQLSI-RH-LDIGRDGTV--W  240 (366)
T ss_pred             Cccccc-hhh----------c--------Cc-----cEEEEeccccchhhhccCc-hhhhhcce-ee-eeeCCCCcE--E
Confidence            332110 000          0        00     1122233344443221100 00000110 00 112334443  2


Q ss_pred             eeeecCCeEEEEecCCCCcce--------eEEeecCe-eeecCCCceEEEEEcCCCCEEEEEeCCccE--EEEccCCceE
Q 005459          418 QVIYGEDRLLVVQSEDTDELK--------ILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDIRQKKWR  486 (696)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~--------w~~~~~~~-~~~~~~~~I~~va~s~dG~~la~ag~dG~i--~w~~~sg~w~  486 (696)
                      --.|-.     -..+|.+.+.        .+.+++|. +...-+.-|-++|...+-.+++..+-.|..  +||..||.-.
T Consensus       241 fgcQy~-----G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv  315 (366)
T COG3490         241 FGCQYR-----GPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVV  315 (366)
T ss_pred             EEEEee-----CCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEE
Confidence            211100     0111222110        11222232 112223347789999888888888888866  9999999744


Q ss_pred             ecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC
Q 005459          487 VFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       487 ~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      .-     +.--.+.|+.-.++..++.     +.+.++++|++.
T Consensus       316 ~~-----a~l~daaGva~~~~gf~vs-----sg~G~~~~~s~~  348 (366)
T COG3490         316 SE-----AALPDAAGVAAAKGGFAVS-----SGQGRIIFYSRA  348 (366)
T ss_pred             ec-----ccccccccceeccCceEEe-----cCCceEEecccc
Confidence            31     1111255666655555444     456889999875

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.10  E-value=0.041  Score=61.27  Aligned_cols=148  Identities=16%  Similarity=0.273  Sum_probs=92.1

Q ss_pred             EEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEE
Q 005459          135 VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL  214 (696)
Q Consensus       135 v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~  214 (696)
                      ++|.+-.++.++.||.+|.++++.-+++....+                                      .        
T Consensus        42 is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~--------------------------------------~--------   75 (846)
T KOG2066|consen   42 ISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNF--------------------------------------D--------   75 (846)
T ss_pred             HHHHHhhcceeeeccccceEEEEecCCcccccc--------------------------------------c--------
Confidence            445555678899999999999887665431111                                      0        


Q ss_pred             EEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEE-EEEcCC-----CcEEEEEecCCeEEEEEcc
Q 005459          215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAPE-----QQILAVGTRRGVVELYDLA  286 (696)
Q Consensus       215 ~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~-v~~sp~-----~~~la~g~~dg~v~vw~~~  286 (696)
                       +++       ..-+|..+++++.||++.+-...+++..  ..-..++. ++++|+     .+.+++|+.-| +.++.-+
T Consensus        76 -~s~-------~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~  146 (846)
T KOG2066|consen   76 -HSS-------SILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN  146 (846)
T ss_pred             -ccc-------cccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhh
Confidence             000       0234556666666665554444333221  11234455 999998     46789999998 7787644


Q ss_pred             CCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeec
Q 005459          287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ  347 (696)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~  347 (696)
                      - -+........      +-.|+|.++.|.  |+++|=+.. -+|+|+|+..++.+..++.
T Consensus       147 w-lgnk~~v~l~------~~eG~I~~i~W~--g~lIAWand-~Gv~vyd~~~~~~l~~i~~  197 (846)
T KOG2066|consen  147 W-LGNKDSVVLS------EGEGPIHSIKWR--GNLIAWAND-DGVKVYDTPTRQRLTNIPP  197 (846)
T ss_pred             h-hcCccceeee------cCccceEEEEec--CcEEEEecC-CCcEEEeccccceeeccCC
Confidence            3 2222222221      157999999996  667776665 5899999999887766654

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.08  E-value=0.0066  Score=67.72  Aligned_cols=147  Identities=14%  Similarity=0.185  Sum_probs=93.0

Q ss_pred             CCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce-----eeEEEcC
Q 005459          306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-----SMMQWDE  380 (696)
Q Consensus       306 h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-----~~~~W~~  380 (696)
                      |+..-+|++||-+.+.|++|...|.|+++++.+|....+...| .+.++.+.-+.++    ..+.+.+     -..+|+.
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH-~SavT~vePs~dg----s~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH-QSAVTLVEPSVDG----STQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred             cccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc-ccccccccccCCc----ceeeeeccccCchHHHhcc
Confidence            8889999999999999999999999999999999877777777 6778888777776    4433332     3456876


Q ss_pred             CC-ceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee----cCCCc
Q 005459          381 YG-YRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI----SQNWP  454 (696)
Q Consensus       381 ~~-~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~----~~~~~  454 (696)
                      .. +.....+.+  +..+.|+- ...-+-|+......++|+.++..                    ..+|.    +.+..
T Consensus      1175 ~s~~~~~Hsf~e--d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~--------------------l~tylt~~~~~~y~ 1232 (1516)
T KOG1832|consen 1175 SSTGGPRHSFDE--DKAVKFSNSLQFRALGTEADDALLYDVQTCSP--------------------LQTYLTDTVTSSYS 1232 (1516)
T ss_pred             ccccCccccccc--cceeehhhhHHHHHhcccccceEEEecccCcH--------------------HHHhcCcchhhhhh
Confidence            43 222222221  12222322 11111222223445566655543                    22322    23333


Q ss_pred             eEEEEEcCCCCEEEEEeCCccEEEEccCC
Q 005459          455 VQHVAASKDGMFLAVAGLHGLILYDIRQK  483 (696)
Q Consensus       455 I~~va~s~dG~~la~ag~dG~i~w~~~sg  483 (696)
                      =.++.|||+.+.+.   .|| ++||++..
T Consensus      1233 ~n~a~FsP~D~LIl---ndG-vLWDvR~~ 1257 (1516)
T KOG1832|consen 1233 NNLAHFSPCDTLIL---NDG-VLWDVRIP 1257 (1516)
T ss_pred             ccccccCCCcceEe---eCc-eeeeeccH
Confidence            47889999999886   333 68998765

>smart00320 WD40 WD40 repeats

Probab=96.01  E-value=0.013  Score=38.34  Aligned_cols=34  Identities=41%  Similarity=0.524  Sum_probs=30.2

Q ss_pred             eeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEE
Q 005459          446 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD  479 (696)
Q Consensus       446 ~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~  479 (696)
                      ..+..|..+|.+++|+++++++++++.||.+ +|+
T Consensus         6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4556788899999999999999999999999 885

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.01  E-value=1.7  Score=42.51  Aligned_cols=83  Identities=12%  Similarity=0.128  Sum_probs=61.3

Q ss_pred             CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEE-EEECCCCCeEEEEEcCCcEEEEEccCCeeEEEe
Q 005459          267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC-IAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI  345 (696)
Q Consensus       267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~-l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l  345 (696)
                      -|++++.|+..|.+.+-+.++ ++....+..         -+.|.+ -...+|+..+-.|+.|++...-|..+..++...
T Consensus        62 vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~---------~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks  131 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVI---------LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS  131 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecc-hhheeeeee---------hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence            367799999999999999988 666555554         223332 234689999999999999999999998888776


Q ss_pred             ecccccceecccccC
Q 005459          346 RQISLSSISSPIVKP  360 (696)
Q Consensus       346 ~~~~~~~v~~~~~sp  360 (696)
                      +-.| ....++++.|
T Consensus       132 kcgG-~~f~sP~i~~  145 (354)
T KOG4649|consen  132 KCGG-GTFVSPVIAP  145 (354)
T ss_pred             ccCC-ceeccceecC
Confidence            6442 3345555555

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.00  E-value=0.82  Score=45.22  Aligned_cols=212  Identities=16%  Similarity=0.028  Sum_probs=106.5

Q ss_pred             CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecc
Q 005459          277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP  356 (696)
Q Consensus       277 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~  356 (696)
                      +|+|..||..+ ++.+-......     ...+.+ +. ..+++..+.++..++.+..||..+++.+.+....+.  +...
T Consensus         2 ~g~l~~~d~~t-G~~~W~~~~~~-----~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~   71 (238)
T PF13360_consen    2 DGTLSALDPRT-GKELWSYDLGP-----GIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGA   71 (238)
T ss_dssp             TSEEEEEETTT-TEEEEEEECSS-----SCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSG
T ss_pred             CCEEEEEECCC-CCEEEEEECCC-----CCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc--ccce
Confidence            68899999877 55554443200     012222 11 234667777788999999999999988877664211  1111


Q ss_pred             cccCCCCCCccce-ecce-eeEEEcCCCceEEEE-ecCCc--ce---EEEEec-ceeeeeccCCCCceeeeeeecCCeEE
Q 005459          357 IVKPNQDCKYEPL-MSGT-SMMQWDEYGYRLYAI-EEGSS--ER---VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLL  427 (696)
Q Consensus       357 ~~sp~~~~~~~~l-~sg~-~~~~W~~~~~~l~~~-~~~~~--~~---v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~  427 (696)
                      ....++    ..+ .+.. .+..++..+++++.. .....  ..   .....+ ++.++.+..++.+...++.+|+.   
T Consensus        72 ~~~~~~----~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~---  144 (238)
T PF13360_consen   72 PVVDGG----RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL---  144 (238)
T ss_dssp             EEEETT----EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE---
T ss_pred             eeeccc----ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE---
Confidence            111111    222 2222 678888777766555 22211  01   112222 45555555566666655444433   


Q ss_pred             EEecCCCCcceeEEe-ecCeeeec---CCCceEEEEEcCCCCEEEEEeCCcc-EEEEccCCc--eEecCCccceeeeEEE
Q 005459          428 VVQSEDTDELKILHL-NLPVSYIS---QNWPVQHVAASKDGMFLAVAGLHGL-ILYDIRQKK--WRVFGDITQEQKIQSK  500 (696)
Q Consensus       428 ~~~~~~~~~~~w~~~-~~~~~~~~---~~~~I~~va~s~dG~~la~ag~dG~-i~w~~~sg~--w~~f~~~~~e~~~~v~  500 (696)
                                .|+.- ..+. ...   ....+..-.+..+| .+.+++.+|. +..|..+++  |+..     ...  ..
T Consensus       145 ----------~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-----~~~--~~  205 (238)
T PF13360_consen  145 ----------LWKYPVGEPR-GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-----ISG--IY  205 (238)
T ss_dssp             ----------EEEEESSTT--SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-----SS---EC
T ss_pred             ----------EEEeecCCCC-CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-----CCC--cc
Confidence                      23211 1111 000   01123333444456 7777777774 444999997  5321     111  22


Q ss_pred             e-EeeeCcEEEEEEeecCCCeEEEEEeeCC
Q 005459          501 G-LLWLGKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       501 ~-~~w~~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      . +.-.++.++++.     .+..|..|++.
T Consensus       206 ~~~~~~~~~l~~~~-----~~~~l~~~d~~  230 (238)
T PF13360_consen  206 SLPSVDGGTLYVTS-----SDGRLYALDLK  230 (238)
T ss_dssp             ECEECCCTEEEEEE-----TTTEEEEEETT
T ss_pred             CCceeeCCEEEEEe-----CCCEEEEEECC
Confidence            3 444566666652     23566666654

...

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.76  E-value=0.74  Score=51.03  Aligned_cols=119  Identities=14%  Similarity=0.126  Sum_probs=77.5

Q ss_pred             CCceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459           20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI   98 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~   98 (696)
                      .....-.++..++++|.++ .+.|+++.-.  +..    .|..+.--.+|.......|++..++|.+|..|.|-+|.++.
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~--~~~----~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRH--TGE----MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecC--chh----hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence            3444456888899999985 5678877764  222    22211111467778899999999999999999999999875


Q ss_pred             cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--eeCCCeEEEEecCCcEEEEecCC
Q 005459           99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKG  161 (696)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~llv~t~~g~i~~~~w~~  161 (696)
                      +.+..         +..     ...+.   ..+...|+|+  +.++.++++|-+.|.|.....+.
T Consensus       108 ~~p~~---------~~~-----~t~~d---~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  108 ELPRD---------LDY-----VTPCD---KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cCCCc---------cee-----ecccc---ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            32211         000     00111   1123456655  56678999999999998877664

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.69  E-value=0.028  Score=64.50  Aligned_cols=74  Identities=24%  Similarity=0.378  Sum_probs=59.7

Q ss_pred             CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459          267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR  346 (696)
Q Consensus       267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~  346 (696)
                      .+-.+|.|+..|.|...|+..+  +-+...+.      .-+++|++++|+.||+.++.|-.+|-|.+||+..++.++.+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~  169 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNE------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT  169 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc--cchhhcCC------ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence            4567999999999999988752  21111221      147899999999999999999999999999999999888887


Q ss_pred             cc
Q 005459          347 QI  348 (696)
Q Consensus       347 ~~  348 (696)
                      .+
T Consensus       170 e~  171 (1206)
T KOG2079|consen  170 EH  171 (1206)
T ss_pred             ec
Confidence            76

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.67  E-value=0.0049  Score=66.59  Aligned_cols=204  Identities=17%  Similarity=0.236  Sum_probs=115.7

Q ss_pred             CeEEEEEcC--CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEc----CCc
Q 005459          258 DAVCASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWK----SRG  330 (696)
Q Consensus       258 ~~v~v~~sp--~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~----Dg~  330 (696)
                      ..-|++.+.  |..++|+|..+|.|-+-.++..-..       .+.+.++|..+.++++|++ |.+.||+|-.    |-.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~  130 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS  130 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccc-------cceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence            344555544  4468999999999999888762211       1122334888999999998 8889998843    557


Q ss_pred             EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccC
Q 005459          331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGV  410 (696)
Q Consensus       331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~  410 (696)
                      +.+||..++..         .+...+.|+. +      ...|..+..|.                    .+.+.+++|..
T Consensus       131 ~~Iwdi~s~lt---------vPke~~~fs~-~------~l~gqns~cwl--------------------rd~klvlaGm~  174 (783)
T KOG1008|consen  131 LKIWDINSLLT---------VPKESPLFSS-S------TLDGQNSVCWL--------------------RDTKLVLAGMT  174 (783)
T ss_pred             ccceecccccC---------CCcccccccc-c------cccCccccccc--------------------cCcchhhcccc
Confidence            99999877631         1111111211 0      01111333443                    22344556666


Q ss_pred             CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcC-CCCEEEEEeCCccE-EEEccCCceEec
Q 005459          411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQKKWRVF  488 (696)
Q Consensus       411 d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~-dG~~la~ag~dG~i-~w~~~sg~w~~f  488 (696)
                      ...+++.|+.+.-.+.                   ..  -.+..++.+.++| .+.|+++-. ||.| +||..-+--+.|
T Consensus       175 sr~~~ifdlRqs~~~~-------------------~s--vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl  232 (783)
T KOG1008|consen  175 SRSVHIFDLRQSLDSV-------------------SS--VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPL  232 (783)
T ss_pred             cchhhhhhhhhhhhhh-------------------hh--hhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHH
Confidence            6677777766544321                   00  0112356688899 888998877 8888 999522211112


Q ss_pred             C-Cccceeee--EEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459          489 G-DITQEQKI--QSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       489 ~-~~~~e~~~--~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      . ...+++..  .+..++|-  ...+.+.+.   .++..||+|+..
T Consensus       233 ~~i~~~~N~~~~~l~~~aycPtrtglla~l~---RdS~tIrlydi~  275 (783)
T KOG1008|consen  233 QIILRNENKKPKQLFALAYCPTRTGLLAVLS---RDSITIRLYDIC  275 (783)
T ss_pred             HHHhhCCCCcccceeeEEeccCCcchhhhhc---cCcceEEEeccc
Confidence            1 11122211  25567774  334444333   345789999874

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.63  E-value=0.18  Score=52.73  Aligned_cols=126  Identities=10%  Similarity=-0.011  Sum_probs=85.2

Q ss_pred             eEEEEEeCC----cEEEEeeccCCceeeeeeeccee-----cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCc-
Q 005459          222 LLFVLYSNG----QLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESAS-  290 (696)
Q Consensus       222 ~~~~~s~dG----~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~-  290 (696)
                      .+.++...|    .+.+....++.+.+.|.....+-     .-|..++. +.++|-+..+.+....|.|.-|..+..-+ 
T Consensus       100 ~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf  179 (558)
T KOG0882|consen  100 FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF  179 (558)
T ss_pred             ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence            456677777    33333445666777775432211     23677776 99999999999999999999999873111 


Q ss_pred             ----eeeEEeec-cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeec
Q 005459          291 ----LIRTVSLY-DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ  347 (696)
Q Consensus       291 ----~~~~~~~~-~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~  347 (696)
                          ..-.++.. ++--.+..++...++.|||+|..+++-..|..|+++.+.+++++..+.+
T Consensus       180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE  241 (558)
T ss_pred             ccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence                11111110 0000112456678999999999999999999999999999998877654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=95.61  E-value=0.32  Score=55.29  Aligned_cols=92  Identities=14%  Similarity=0.152  Sum_probs=65.0

Q ss_pred             cCCceeeeeeeccee---cCCCCeEEEEEcCC-CcEEEEEecCCeEEEEEccCCCce-eeEEeeccCCCCCCCCCCeEEE
Q 005459          239 KKGLKLAEFIKIDKE---LGSGDAVCASIAPE-QQILAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDTGPVSCI  313 (696)
Q Consensus       239 d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~-~~~~~~~~~~~~~~h~g~V~~l  313 (696)
                      |.-+++||++.-+.+   .-+.++..+.|.|. -..+|+.+..|...+-|..+...+ ........      -...+..+
T Consensus       245 D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p------~~s~i~~f  318 (1118)
T KOG1275|consen  245 DPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP------NGSGISAF  318 (1118)
T ss_pred             cchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEcc------CCCcceeE
Confidence            455788998765433   34556666889997 467889999999999884432222 12222200      23449999


Q ss_pred             EECCCCCeEEEEEcCCcEEEEEc
Q 005459          314 AWTPDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       314 ~~spdg~~lasg~~Dg~v~vW~~  336 (696)
                      .+|++|..||.|..+|.|-+|.-
T Consensus       319 DiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  319 DISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             EecCCCceEEEecccCcEeeecC
Confidence            99999999999999999999973

>PRK02888 nitrous-oxide reductase; Validated

Probab=95.61  E-value=0.42  Score=53.28  Aligned_cols=103  Identities=10%  Similarity=0.039  Sum_probs=69.6

Q ss_pred             EEEEeCCcEEEEee-ccCCceeeeeeeccee----------------cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEcc
Q 005459          224 FVLYSNGQLMSCSV-SKKGLKLAEFIKIDKE----------------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLA  286 (696)
Q Consensus       224 ~~~s~dG~~~~~~~-~d~~~~~~~~~~~~~~----------------~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~  286 (696)
                      +.++|||+.++++. .+.++.+.|..+.+.+                .| ..+...+|.++|....+-.-|..|..||++
T Consensus       326 V~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kwn~~  404 (635)
T PRK02888        326 VNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWNIE  404 (635)
T ss_pred             eEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEEehH
Confidence            45899999887766 4677777776653321                12 456678999999999999999999999987


Q ss_pred             CC-----Cc-eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459          287 ES-----AS-LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK  327 (696)
Q Consensus       287 ~~-----~~-~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~  327 (696)
                      ..     ++ ....+...+..|.++|......=.-.|||++|++...
T Consensus       405 ~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        405 AAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK  451 (635)
T ss_pred             HHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence            51     11 1223344444566666544444445789999988644

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.83  E-value=0.079  Score=37.67  Aligned_cols=33  Identities=24%  Similarity=0.516  Sum_probs=29.4

Q ss_pred             CCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459          307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC  339 (696)
Q Consensus       307 ~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~  339 (696)
                      ...|.+++|+|....||.|..||.|.++.+...
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence            456999999999999999999999999998443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=94.80  E-value=7.1  Score=42.02  Aligned_cols=83  Identities=28%  Similarity=0.386  Sum_probs=50.9

Q ss_pred             EEEEcCCCcEEEEEecCCeEEEEEccCCCcee-----eEEe-------e----------ccC----------C--CCCCC
Q 005459          261 CASIAPEQQILAVGTRRGVVELYDLAESASLI-----RTVS-------L----------YDW----------G--YSMDD  306 (696)
Q Consensus       261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~-----~~~~-------~----------~~~----------~--~~~~h  306 (696)
                      .++|+++..-||+|...|.|.||....+...-     ....       .          .+.          |  .-...
T Consensus         6 ~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~   85 (395)
T PF08596_consen    6 HVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAK   85 (395)
T ss_dssp             EEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---
T ss_pred             EEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheecc
Confidence            37777777778888888888887765421100     0000       0          000          0  00124


Q ss_pred             CCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEE
Q 005459          307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST  344 (696)
Q Consensus       307 ~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~  344 (696)
                      .|+|++++.| |=-.+|.|+++|.+.|-|+.+...+..
T Consensus        86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~  122 (395)
T PF08596_consen   86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN  122 (395)
T ss_dssp             S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee
Confidence            7999999998 545999999999999999999887765

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=94.80  E-value=0.55  Score=52.36  Aligned_cols=143  Identities=12%  Similarity=0.028  Sum_probs=76.2

Q ss_pred             ECCCCCeEEEEEcCCcEEEEEccC-----CeeEEEeecccccceecccccCCCCCCccceecce----eeEEEcCCCceE
Q 005459          315 WTPDNSAFAVGWKSRGLTVWSVSG-----CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRL  385 (696)
Q Consensus       315 ~spdg~~lasg~~Dg~v~vW~~~~-----~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l  385 (696)
                      +.+||++...+  ++.|.+.|..+     ...+..+.-.  .....+.++||+    +++....    ++-+-|.+..+-
T Consensus       284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDG----kylyVanklS~tVSVIDv~k~k~  355 (635)
T PRK02888        284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDG----KYFIANGKLSPTVTVIDVRKLDD  355 (635)
T ss_pred             hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECC--CCccceEECCCC----CEEEEeCCCCCcEEEEEChhhhh
Confidence            34578877663  57899999987     4566666643  346778899999    6554332    555556554331


Q ss_pred             ------------EEEecCCcceE-EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEe-ecCeeee-
Q 005459          386 ------------YAIEEGSSERV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL-NLPVSYI-  449 (696)
Q Consensus       386 ------------~~~~~~~~~~v-~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~-  449 (696)
                                  .....-...++ .+|+. ++...|-..|..+-.|++...-.   .+.|.+    .|..+ +++-.|. 
T Consensus       356 ~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~---~~~g~~----~~~v~~k~dV~y~p  428 (635)
T PRK02888        356 LFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIR---AYKGEK----VDPIVQKLDVHYQP  428 (635)
T ss_pred             hhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHH---Hhcccc----CCcceecccCCCcc
Confidence                        11111112233 55555 55556666677777777654210   001111    11111 1233332 


Q ss_pred             cCCCceEEEEEcCCCCEEEEEeC
Q 005459          450 SQNWPVQHVAASKDGMFLAVAGL  472 (696)
Q Consensus       450 ~~~~~I~~va~s~dG~~la~ag~  472 (696)
                      +|+..-..=.-.|||+||++...
T Consensus       429 gh~~~~~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        429 GHNHASMGETKEADGKWLVSLNK  451 (635)
T ss_pred             ceeeecCCCcCCCCCCEEEEccc
Confidence            44332222335799999988753

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.79  E-value=0.46  Score=49.10  Aligned_cols=56  Identities=11%  Similarity=0.096  Sum_probs=42.5

Q ss_pred             CCCCCCeEEEEECCCCC-eEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCC
Q 005459          304 MDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN  361 (696)
Q Consensus       304 ~~h~g~V~~l~~spdg~-~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~  361 (696)
                      +.|...|++|+|||..+ .|..++.+.+|+|.|+++..++.+...+  ..+++++|+-+
T Consensus       190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDld  246 (463)
T KOG1645|consen  190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLD  246 (463)
T ss_pred             cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccC
Confidence            34888999999999888 6778999999999999998877666554  33444444333

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=94.76  E-value=0.069  Score=59.69  Aligned_cols=69  Identities=19%  Similarity=0.343  Sum_probs=59.5

Q ss_pred             EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459          260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS  337 (696)
Q Consensus       260 v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~  337 (696)
                      +.+.|+|..-.||.|..-|.+.+|...+  ...++...       .|+.++.-+.|||||.+|.++..-|.|.+|...
T Consensus        63 tSLCWHpe~~vLa~gwe~g~~~v~~~~~--~e~htv~~-------th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   63 TSLCWHPEEFVLAQGWEMGVSDVQKTNT--TETHTVVE-------THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhccChHHHHHhhccccceeEEEecCC--ceeeeecc-------CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            3488999999999999999999999876  33444443       399999999999999999999999999999875

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.69  E-value=0.059  Score=38.31  Aligned_cols=29  Identities=21%  Similarity=0.370  Sum_probs=26.8

Q ss_pred             cccEEEEcCCCcEEEEEecCcEEEEEEEE
Q 005459           69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQ   97 (696)
Q Consensus        69 ~~~~v~wsPDg~~lav~t~dg~l~l~~l~   97 (696)
                      ++..++|+|...+||+++.+|.|.+|++.
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            46789999999999999999999999984

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=94.30  E-value=6.4  Score=39.32  Aligned_cols=219  Identities=13%  Similarity=0.069  Sum_probs=99.8

Q ss_pred             CceEEEEEeCCc-EEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459           21 SQQIIYFKVNNG-LLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI   98 (696)
Q Consensus        21 ~~~~v~fs~dg~-lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~   98 (696)
                      ..+-+.++||.+ |||+.. +..|...+.  .+..+..+.     +...|..-.+++.-++.++++.-.++.|.++++..
T Consensus        23 e~SGLTy~pd~~tLfaV~d~~~~i~els~--~G~vlr~i~-----l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~   95 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL--DGKVLRRIP-----LDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD   95 (248)
T ss_dssp             -EEEEEEETTTTEEEEEETTTTEEEEEET--T--EEEEEE------SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred             CccccEEcCCCCeEEEEECCCCEEEEEcC--CCCEEEEEe-----CCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence            467799999855 555553 346655555  334343332     44567888999998887777665688899999854


Q ss_pred             cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcc
Q 005459           99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV  178 (696)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~  178 (696)
                      .......       ..+..+.+.+...   ......-.|..+.+++++++-...-..++.+++.... ..+       ..
T Consensus        96 ~~~~~~~-------~~~~~~~l~~~~~---~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~-~~~-------~~  157 (248)
T PF06977_consen   96 DTTSLDR-------ADVQKISLGFPNK---GNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG-FDL-------FV  157 (248)
T ss_dssp             --TT--E-------EEEEEEE---S------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S-S---------EE
T ss_pred             cccccch-------hhceEEecccccC---CCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc-cce-------ee
Confidence            3221100       0011111111100   0111112255556678887766555555555542200 000       00


Q ss_pred             cccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCce-eeeeeeccee--cC
Q 005459          179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDKE--LG  255 (696)
Q Consensus       179 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~-~~~~~~~~~~--~~  255 (696)
                      ....++..                 ....-.-+..+.|++..+.+.+++...+.++.-..++.+. .+.+..+..-  ..
T Consensus       158 ~~~~~~~~-----------------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~  220 (248)
T PF06977_consen  158 SDDQDLDD-----------------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKD  220 (248)
T ss_dssp             EE-HHHH------------------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS-
T ss_pred             cccccccc-----------------ccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccc
Confidence            00000000                 0001112567788998888888888888887666666543 3443332100  01


Q ss_pred             CCCeEEEEEcCCCcEEEEEecCCeEEE
Q 005459          256 SGDAVCASIAPEQQILAVGTRRGVVEL  282 (696)
Q Consensus       256 ~~~~v~v~~sp~~~~la~g~~dg~v~v  282 (696)
                      ...+--++|.++|++.++. +-+...+
T Consensus       221 ~~QpEGIa~d~~G~LYIvs-EpNlfy~  246 (248)
T PF06977_consen  221 IPQPEGIAFDPDGNLYIVS-EPNLFYR  246 (248)
T ss_dssp             --SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred             cCCccEEEECCCCCEEEEc-CCceEEE
Confidence            1223338899999877765 4444333

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.25  E-value=5.3  Score=43.88  Aligned_cols=59  Identities=19%  Similarity=0.334  Sum_probs=42.3

Q ss_pred             EEEcCCCcEEEEEecC-CeEEEEEccCC-CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459          262 ASIAPEQQILAVGTRR-GVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK  327 (696)
Q Consensus       262 v~~sp~~~~la~g~~d-g~v~vw~~~~~-~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~  327 (696)
                      +||+|+.+.+|+++.- +.|.||.+... ...++.++.       +....-..++|--|.-.|+--+.
T Consensus       344 iAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqL-------e~~ERPKGiCFltdklLLilVGk  404 (671)
T PF15390_consen  344 IAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQL-------ESNERPKGICFLTDKLLLILVGK  404 (671)
T ss_pred             eeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEc-------ccCCCCceeeEccCCeEEEEecc
Confidence            8999999999999975 57899998752 234566655       23445677888878776665443

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.25  E-value=2.4  Score=48.14  Aligned_cols=106  Identities=14%  Similarity=0.006  Sum_probs=58.8

Q ss_pred             EEEEEeCCcEEEEee------ccCCceeeeeeec---cee-cCCCCeEEEEEcCCCcEEEEEecC-CeEEEEEccCCCce
Q 005459          223 LFVLYSNGQLMSCSV------SKKGLKLAEFIKI---DKE-LGSGDAVCASIAPEQQILAVGTRR-GVVELYDLAESASL  291 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~------~d~~~~~~~~~~~---~~~-~~~~~~v~v~~sp~~~~la~g~~d-g~v~vw~~~~~~~~  291 (696)
                      ..++++||+.++...      .|..-.+|-...+   +.+ .+ ..-..-+|+|||+.|++.... ..+++.+-.. ...
T Consensus       354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~-~gq  431 (591)
T PRK13616        354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA-TGQ  431 (591)
T ss_pred             cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC-CCCCCceECCCCCceEEEecCcceEEEeccCC-Cce
Confidence            456889999877666      2444456644321   111 22 122337899999988887643 2233433222 112


Q ss_pred             eeEEe--eccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEE
Q 005459          292 IRTVS--LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV  333 (696)
Q Consensus       292 ~~~~~--~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~v  333 (696)
                      +..+.  +... .. ...+.|..++|||||+.+|.-.. +.|.+
T Consensus       432 l~~~~vd~ge~-~~-~~~g~Issl~wSpDG~RiA~i~~-g~v~V  472 (591)
T PRK13616        432 LARTPVDASAV-AS-RVPGPISELQLSRDGVRAAMIIG-GKVYL  472 (591)
T ss_pred             EEEEeccCchh-hh-ccCCCcCeEEECCCCCEEEEEEC-CEEEE
Confidence            22111  1000 00 13568999999999999987663 54444

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.16  E-value=1.7  Score=50.28  Aligned_cols=77  Identities=17%  Similarity=0.180  Sum_probs=51.6

Q ss_pred             ceEEEEEeCCcEEEEEccCeEEEeecCCce----------ee-EE-EeecChHHH--hhcccccEEEEcCCC---cEEEE
Q 005459           22 QQIIYFKVNNGLLLIASPCHIELWSSSQHK----------VR-LG-KYKRDSESV--QREGENLQAVWSPDT---KLIAV   84 (696)
Q Consensus        22 ~~~v~fs~dg~lla~~~~~~v~iW~~~~~~----------~~-l~-~~~r~~~sl--~~~G~~~~v~wsPDg---~~lav   84 (696)
                      ..-|.+||+|+++|.++...|.|-.+-+.-          .. .+ .+.-...-+  .....+..+.|.|.+   +.|++
T Consensus        87 v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~v  166 (717)
T PF10168_consen   87 VHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVV  166 (717)
T ss_pred             EEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEE
Confidence            344679999999999999988887763210          00 11 111011111  112456789999985   89999


Q ss_pred             EecCcEEEEEEEEe
Q 005459           85 VTSSLYLHIFKVQI   98 (696)
Q Consensus        85 ~t~dg~l~l~~l~~   98 (696)
                      -|+|+++|+||+..
T Consensus       167 Ltsdn~lR~y~~~~  180 (717)
T PF10168_consen  167 LTSDNTLRLYDISD  180 (717)
T ss_pred             EecCCEEEEEecCC
Confidence            99999999999964

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=93.97  E-value=0.71  Score=39.36  Aligned_cols=65  Identities=15%  Similarity=0.258  Sum_probs=49.6

Q ss_pred             eEE-EEEcCCC-cEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459          259 AVC-ASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       259 ~v~-v~~sp~~-~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~  336 (696)
                      +.| +.|.-|| +-|.+|+.|..||+|+-+   +.+..+..         ++.|.+|+-... ..++-|-++|+|.+++-
T Consensus         4 al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e---------~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    4 ALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEITE---------TDKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             EEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEec---------ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            445 5666664 578999999999999843   55666664         677888887776 56888999999988864

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.93  E-value=11  Score=40.84  Aligned_cols=113  Identities=15%  Similarity=0.130  Sum_probs=54.0

Q ss_pred             eEEEEEcCCCCEEEEEeCCc-c---E-EEEccCC-----ceEecCCccceeeeEEEeEeeeCc-EEEEEEeecCCCeEEE
Q 005459          455 VQHVAASKDGMFLAVAGLHG-L---I-LYDIRQK-----KWRVFGDITQEQKIQSKGLLWLGK-IIVVCNYIDSSNTYEL  523 (696)
Q Consensus       455 I~~va~s~dG~~la~ag~dG-~---i-~w~~~sg-----~w~~f~~~~~e~~~~v~~~~w~~~-~lv~~~~~~~~~~~~l  523 (696)
                      ...+..|+||+++++....+ .   + +.+...+     +|+.+.......   ...+...++ +.+.+  +.....+.|
T Consensus       229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~---~~~v~~~~~~~yi~T--n~~a~~~~l  303 (414)
T PF02897_consen  229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV---EYYVDHHGDRLYILT--NDDAPNGRL  303 (414)
T ss_dssp             EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS----EEEEEEETTEEEEEE---TT-TT-EE
T ss_pred             EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce---EEEEEccCCEEEEee--CCCCCCcEE
Confidence            45688999999987654433 2   4 5566654     676653321111   112333355 44444  344444555


Q ss_pred             EEeeCCCCCc--cc-eeEEeecCC-ccEEEEccCCEEEE-EEcCceEEEEEEEEe
Q 005459          524 LFYPRYHLDQ--SS-LLCRKSLLA-KPIVMDVYEDYILV-TYRPFDVHIFHVKLF  573 (696)
Q Consensus       524 r~y~~~~l~~--~~-~~~~~~~~~-~~l~~~~~~~~llv-~~~d~~~~l~~~~~~  573 (696)
                      --.+..+...  .. .+..+ -.. ....+...+++|++ ...++.-+|+.+...
T Consensus       304 ~~~~l~~~~~~~~~~~l~~~-~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  304 VAVDLADPSPAEWWTVLIPE-DEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             EEecccccccccceeEEcCC-CCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence            5555543221  11 11111 111 12344567787777 555666666666653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=93.93  E-value=7.5  Score=38.81  Aligned_cols=123  Identities=12%  Similarity=0.134  Sum_probs=65.3

Q ss_pred             EEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCc
Q 005459          211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESAS  290 (696)
Q Consensus       211 i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~  290 (696)
                      +..++|.+..+.+.++......++--..++.+.  ...   .+.+..+.=-+++.-++.++++--.++.+.+++++....
T Consensus        24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vl--r~i---~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~   98 (248)
T PF06977_consen   24 LSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVL--RRI---PLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT   98 (248)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETT--EE--EEE---E-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred             ccccEEcCCCCeEEEEECCCCEEEEEcCCCCEE--EEE---eCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence            667777776554444444433333222333221  000   113434444478877787776655689999999855332


Q ss_pred             ee--eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459          291 LI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       291 ~~--~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~  338 (696)
                      .+  ......+.+....+...+-.|+|.|.++.|+++-+..-.+++.+.+
T Consensus        99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~  148 (248)
T PF06977_consen   99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG  148 (248)
T ss_dssp             T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred             ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence            22  2222223333334666799999999999998888877788888765

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=93.92  E-value=9.7  Score=40.91  Aligned_cols=107  Identities=16%  Similarity=0.253  Sum_probs=70.1

Q ss_pred             EEEeCCc-EEEEeeccCCceeeeeeeccee----cCCCCeEEEEEcCCCcEEEEEec---CCeEEEEEccCCCceeeEEe
Q 005459          225 VLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE----LGSGDAVCASIAPEQQILAVGTR---RGVVELYDLAESASLIRTVS  296 (696)
Q Consensus       225 ~~s~dG~-~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~v~~sp~~~~la~g~~---dg~v~vw~~~~~~~~~~~~~  296 (696)
                      .++++|. .++....+..+.+.|.......    .+. .+.-++++|+++.+-++..   ++++.+.|..+ ...+.+..
T Consensus        80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~~~~~~  157 (381)
T COG3391          80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKVTATIP  157 (381)
T ss_pred             eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeEEEEEe
Confidence            3556666 5665555666776664332222    222 4445999999977766655   67888888776 56665544


Q ss_pred             eccCCCCCCCCCCeEEEEECCCCCeEEEEE-cCCcEEEEEccCCeeE
Q 005459          297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRLM  342 (696)
Q Consensus       297 ~~~~~~~~~h~g~V~~l~~spdg~~lasg~-~Dg~v~vW~~~~~~~~  342 (696)
                      .        -..+ ..++++|+|+.+.+.. .++.+.+.|..+....
T Consensus       158 v--------G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         158 V--------GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             c--------CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence            3        1234 8899999999776665 6789999996665443

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.87  E-value=2.2  Score=48.38  Aligned_cols=70  Identities=20%  Similarity=0.354  Sum_probs=48.6

Q ss_pred             EEcCCCCEEEEEeCCcc-----E-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC
Q 005459          459 AASKDGMFLAVAGLHGL-----I-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       459 a~s~dG~~la~ag~dG~-----i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      +..-+|+..|+||.||.     + .||..+.+|.....-...+. .+....+.+..-+++++........+..|+.+
T Consensus       471 ~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs-~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~  546 (571)
T KOG4441|consen  471 VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS-AVGVVVLGGKLYAVGGFDGNNNLNTVECYDPE  546 (571)
T ss_pred             EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc-cccEEEECCEEEEEecccCccccceeEEcCCC
Confidence            44568889999998873     6 89999999998754433331 23334555666677777666666788888764

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.73  E-value=0.56  Score=50.91  Aligned_cols=130  Identities=13%  Similarity=0.247  Sum_probs=66.7

Q ss_pred             EEEEEeCCcEEEEee--ccC--Cceeeeeeeccee--cCCC-CeEEEEEcCCCcEEEEE-ecCCeEEEEEccCCCceeeE
Q 005459          223 LFVLYSNGQLMSCSV--SKK--GLKLAEFIKIDKE--LGSG-DAVCASIAPEQQILAVG-TRRGVVELYDLAESASLIRT  294 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~--~d~--~~~~~~~~~~~~~--~~~~-~~v~v~~sp~~~~la~g-~~dg~v~vw~~~~~~~~~~~  294 (696)
                      .-.+++||+.++...  ..+  .+.+++...++..  ..-. ....-+|+|||+.||.. ..||...+|-++..++....
T Consensus       197 ~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~  276 (425)
T COG0823         197 TPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR  276 (425)
T ss_pred             ccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee
Confidence            344667776554433  122  2444555544321  1111 11226899999988865 56777666655543344433


Q ss_pred             EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC-c--EEEEEccCCeeEEEeecccccceecccccCCC
Q 005459          295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-G--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg-~--v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      +..        -.+.-..=.|||||+.++-.+..+ .  |.+.+..++.. ..+...+... ..+.++|++
T Consensus       277 Lt~--------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~-~~p~~SpdG  337 (425)
T COG0823         277 LTN--------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGN-SNPVWSPDG  337 (425)
T ss_pred             ccc--------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCC-cCccCCCCC
Confidence            332        122222457999999887765543 3  45555566543 2222111111 156666666

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.67  E-value=5.9  Score=39.85  Aligned_cols=95  Identities=19%  Similarity=0.259  Sum_probs=56.8

Q ss_pred             CeEEEEEcCCCcEEEEEe-cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEE-
Q 005459          258 DAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS-  335 (696)
Q Consensus       258 ~~v~v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~-  335 (696)
                      .....++|++++.+|.-. .++.-.||-....+.....+.+          ..+..-+|+++|...++...+...+++. 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g----------~~l~~PS~d~~g~~W~v~~~~~~~~~~~~   94 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG----------GSLTRPSWDPDGWVWTVDDGSGGVRVVRD   94 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC----------CccccccccCCCCEEEEEcCCCceEEEEe
Confidence            445599999999887765 3334445544442333322233          2677789999999888888777878874 


Q ss_pred             ccCCe-eEEEeeccccc-ceecccccCCC
Q 005459          336 VSGCR-LMSTIRQISLS-SISSPIVKPNQ  362 (696)
Q Consensus       336 ~~~~~-~~~~l~~~~~~-~v~~~~~sp~~  362 (696)
                      ...+. ....+...... .|+++++|||+
T Consensus        95 ~~~g~~~~~~v~~~~~~~~I~~l~vSpDG  123 (253)
T PF10647_consen   95 SASGTGEPVEVDWPGLRGRITALRVSPDG  123 (253)
T ss_pred             cCCCcceeEEecccccCCceEEEEECCCC
Confidence            22222 11122211111 57777777777

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.17  E-value=6.7  Score=42.88  Aligned_cols=85  Identities=12%  Similarity=0.170  Sum_probs=46.2

Q ss_pred             eEEEEEcCCCcEEEEEecCCeEEEE-EccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459          259 AVCASIAPEQQILAVGTRRGVVELY-DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS  337 (696)
Q Consensus       259 ~v~v~~sp~~~~la~g~~dg~v~vw-~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~  337 (696)
                      +..++|.++++ +|+-..+++|+++ +.+.  +..+.+..         ...+..|-.   |..|+..+.+ .|.+||..
T Consensus        71 g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~--~~~k~i~~---------~~~~~~If~---G~LL~~~~~~-~i~~yDw~  134 (443)
T PF04053_consen   71 GLSFVWSSRNR-YAVLESSSTIKIYKNFKN--EVVKSIKL---------PFSVEKIFG---GNLLGVKSSD-FICFYDWE  134 (443)
T ss_dssp             -SEEEE-TSSE-EEEE-TTS-EEEEETTEE---TT--------------SS-EEEEE----SSSEEEEETT-EEEEE-TT
T ss_pred             eeEEEEecCcc-EEEEECCCeEEEEEcCcc--ccceEEcC---------CcccceEEc---CcEEEEECCC-CEEEEEhh
Confidence            34477888555 6776778999996 3322  22233333         223455543   8888888774 89999999


Q ss_pred             CCeeEEEeecccccceecccccCCC
Q 005459          338 GCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       338 ~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      +++.+..+.-.   .|..+.|++++
T Consensus       135 ~~~~i~~i~v~---~vk~V~Ws~~g  156 (443)
T PF04053_consen  135 TGKLIRRIDVS---AVKYVIWSDDG  156 (443)
T ss_dssp             T--EEEEESS----E-EEEEE-TTS
T ss_pred             HcceeeEEecC---CCcEEEEECCC
Confidence            99998887643   36667777766

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=92.12  E-value=12  Score=44.09  Aligned_cols=72  Identities=15%  Similarity=0.201  Sum_probs=48.9

Q ss_pred             EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEE-----------eeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459          260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTV-----------SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS  328 (696)
Q Consensus       260 v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~-----------~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D  328 (696)
                      +.+....-+..++....||+|.++|-.+ .+.+...           +..+.++...+-.++..++|||.+..++.-..|
T Consensus       263 ~si~~~~~~~~v~~~~~DGsI~~~dr~t-~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~  341 (753)
T PF11635_consen  263 VSITSPELDIVVAFAFSDGSIEFRDRNT-MKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDED  341 (753)
T ss_pred             EEEEecccCcEEEEEEcCCeEEEEecCc-chhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEecC
Confidence            3355555677899999999999999766 3222111           111222332334467789999999999999999


Q ss_pred             CcEE
Q 005459          329 RGLT  332 (696)
Q Consensus       329 g~v~  332 (696)
                      |.+.
T Consensus       342 ~~~~  345 (753)
T PF11635_consen  342 GKTK  345 (753)
T ss_pred             CCce
Confidence            8876

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=91.86  E-value=0.51  Score=45.33  Aligned_cols=99  Identities=10%  Similarity=0.140  Sum_probs=58.6

Q ss_pred             CcEEEEeeccCCceeeeeeecc----ee-cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459          230 GQLMSCSVSKKGLKLAEFIKID----KE-LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS  303 (696)
Q Consensus       230 G~~~~~~~~d~~~~~~~~~~~~----~~-~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~  303 (696)
                      ++-++++..++.+.+|....-.    .. .+-+...| +..-.++.+..+|+.||.||.|++.. .+.+-....      
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~------  142 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQ------  142 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc-Cceeeeecc------
Confidence            4455666667766666543110    00 12233344 55555677899999999999999876 443333333      


Q ss_pred             CCCC-CCeEEEEECCCCCeEEEE--EcCCcEEEEEcc
Q 005459          304 MDDT-GPVSCIAWTPDNSAFAVG--WKSRGLTVWSVS  337 (696)
Q Consensus       304 ~~h~-g~V~~l~~spdg~~lasg--~~Dg~v~vW~~~  337 (696)
                        |+ .++..+..+..++.|+.+  +.|..++.|++.
T Consensus       143 --h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  143 --HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             --ccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence              66 455555555555666666  666666666664

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=91.80  E-value=16  Score=36.98  Aligned_cols=63  Identities=21%  Similarity=0.303  Sum_probs=46.5

Q ss_pred             CCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe
Q 005459          266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR  340 (696)
Q Consensus       266 p~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~  340 (696)
                      ..++.|++|+++| +.+|+.+......+..+          ..+|..|..-|+-+.|++-++ +.+.++++..-.
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----------~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~   67 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK----------LSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLE   67 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEee----------cceEEEEEEecccCEEEEEcC-CccEEEEchhhc
Confidence            4578899999999 89999844234444333          334999999998887777654 999999986543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.74  E-value=15  Score=36.36  Aligned_cols=62  Identities=16%  Similarity=0.142  Sum_probs=32.5

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEE--EEEcC-CCcEEEEEecCCeEEEEEcc
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC--ASIAP-EQQILAVGTRRGVVELYDLA  286 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~--v~~sp-~~~~la~g~~dg~v~vw~~~  286 (696)
                      +...+||.++.+++.|++....|..+-.+.  ....+.+.  =+++| ++.+.|+ ...|.|.--+.+
T Consensus        99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a-~t~G~vlavt~~  165 (354)
T KOG4649|consen   99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA-ITAGAVLAVTKN  165 (354)
T ss_pred             eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE-eccceEEEEccC
Confidence            345677888888888887777666543222  11122222  35566 5554444 344544433333

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.38  E-value=2  Score=42.67  Aligned_cols=54  Identities=17%  Similarity=0.273  Sum_probs=34.9

Q ss_pred             EEEeCCcEEEEEc------cCeEEEeecCCceeeEEEeecChHHHhhcccc-cEEEEcCCCcEEEEEe
Q 005459           26 YFKVNNGLLLIAS------PCHIELWSSSQHKVRLGKYKRDSESVQREGEN-LQAVWSPDTKLIAVVT   86 (696)
Q Consensus        26 ~fs~dg~lla~~~------~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~-~~v~wsPDg~~lav~t   86 (696)
                      .|||||++|-+..      .+-|-|+|.+..-..++.       +.+||-- -.+.|.+||+.++++.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE-------~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGE-------FSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecc-------cccCCcCcceeEEecCCcEEEEeC
Confidence            3999999886652      235889998622122222       2234421 3699999999999974

>PRK13616 lipoprotein LpqB; Provisional

Probab=90.94  E-value=8.9  Score=43.62  Aligned_cols=88  Identities=14%  Similarity=0.127  Sum_probs=51.0

Q ss_pred             EEEEcCCCcEEEEEe------cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC-CcEEE
Q 005459          261 CASIAPEQQILAVGT------RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTV  333 (696)
Q Consensus       261 ~v~~sp~~~~la~g~------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D-g~v~v  333 (696)
                      ..++||||+.+|.--      .|..-.||-.+..+.......+        .  ....=+|+|||..|++.... ..+++
T Consensus       354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--------~--~~t~PsWspDG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--------H--SLTRPSWSLDADAVWVVVDGNTVVRV  423 (591)
T ss_pred             cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--------C--CCCCceECCCCCceEEEecCcceEEE
Confidence            389999999998766      3554455554432333222222        2  36778999999988877542 11222


Q ss_pred             E-----------EccCCeeEEEeecccccceecccccCCC
Q 005459          334 W-----------SVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       334 W-----------~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      .           .+.++....   .. ...|.++++|||+
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~---~~-~g~Issl~wSpDG  459 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVAS---RV-PGPISELQLSRDG  459 (591)
T ss_pred             eccCCCceEEEEeccCchhhh---cc-CCCcCeEEECCCC
Confidence            2           333332211   11 2358888888888

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=90.91  E-value=2  Score=49.79  Aligned_cols=94  Identities=18%  Similarity=0.152  Sum_probs=61.1

Q ss_pred             EEEEeeccCCceeeeeeec-cee---cC-----CCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC
Q 005459          232 LMSCSVSKKGLKLAEFIKI-DKE---LG-----SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY  302 (696)
Q Consensus       232 ~~~~~~~d~~~~~~~~~~~-~~~---~~-----~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~  302 (696)
                      .-+++.++..+..||.+.. .++   ..     -.+-.|++-+.+| .||+|+.+|.||+||--. ......+.+     
T Consensus       544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~AKT~lp~-----  616 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KRAKTALPG-----  616 (794)
T ss_pred             ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc-hhhhhcCCC-----
Confidence            3456677777778887642 111   11     1233456655555 689999999999999421 221222223     


Q ss_pred             CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459          303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       303 ~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~  336 (696)
                         -..||..|..+.||++|++... .-+-+.++
T Consensus       617 ---lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  617 ---LGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             ---CCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence               4679999999999999887665 56667665

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.65  E-value=0.99  Score=52.49  Aligned_cols=71  Identities=18%  Similarity=0.328  Sum_probs=50.7

Q ss_pred             CeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459          258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       258 ~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~  336 (696)
                      ...+++||.+|++++.|-.+|.|.+||+.. +...+.+....-|    |++ |..+.|..++..+.++..-|.  +|..
T Consensus       132 ~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap----~t~-vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  132 PVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAP----VTG-VIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCc----cce-EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            344599999999999999999999999987 6777766651110    222 445566667777777766443  7775

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=90.03  E-value=47  Score=39.34  Aligned_cols=77  Identities=14%  Similarity=0.259  Sum_probs=49.8

Q ss_pred             CCCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEee-cChHHHhhcccccEEEEcCCC------cEEEEEecCcE
Q 005459           19 PSSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYK-RDSESVQREGENLQAVWSPDT------KLIAVVTSSLY   90 (696)
Q Consensus        19 ~~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~-r~~~sl~~~G~~~~v~wsPDg------~~lav~t~dg~   90 (696)
                      |+..+|+....+.+.++++ +...+.-.... .+.++..+. |..    -...+.++++.||.      +.+++++.|+.
T Consensus       537 P~~~~Iv~~avnr~qiVvalSngelvyfe~d-~sgql~E~~er~t----l~~~vac~ai~~~~~g~krsrfla~a~~d~~  611 (1205)
T KOG1898|consen  537 PERVRIVKCAVNRRQIVVALSNGELVYFEGD-VSGQLNEFTERVT----LSTDVACLAIGQDPEGEKRSRFLALASVDNM  611 (1205)
T ss_pred             CCceEEEEEeecceEEEEEccCCeEEEEEec-cCccceeeeeeee----eceeehhhccCCCCcchhhcceeeeeccccc
Confidence            4567777666665555555 55554434332 334455553 221    23567789999887      47999999999


Q ss_pred             EEEEEEEecC
Q 005459           91 LHIFKVQITE  100 (696)
Q Consensus        91 l~l~~l~~~~  100 (696)
                      ++++.+....
T Consensus       612 vriisL~p~d  621 (1205)
T KOG1898|consen  612 VRIISLDPSD  621 (1205)
T ss_pred             eeEEEecCcc
Confidence            9999998443

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=89.95  E-value=32  Score=37.27  Aligned_cols=57  Identities=19%  Similarity=0.401  Sum_probs=39.2

Q ss_pred             EEEcCCCcEEEEEe-cCC----eEEEEEccCCCceee-EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC
Q 005459          262 ASIAPEQQILAVGT-RRG----VVELYDLAESASLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR  329 (696)
Q Consensus       262 v~~sp~~~~la~g~-~dg----~v~vw~~~~~~~~~~-~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg  329 (696)
                      .++|||++++|.+- ..|    +++++|+++ ++.+. .+..         .. -..++|++||+.|+-...|.
T Consensus       129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i~~---------~~-~~~~~W~~d~~~~~y~~~~~  191 (414)
T PF02897_consen  129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGIEN---------PK-FSSVSWSDDGKGFFYTRFDE  191 (414)
T ss_dssp             EEETTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEEEE---------EE-SEEEEECTTSSEEEEEECST
T ss_pred             eeECCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCcccc---------cc-cceEEEeCCCCEEEEEEeCc
Confidence            78999999999773 334    499999988 54443 2232         11 12399999999887665443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.48  E-value=4.2  Score=47.87  Aligned_cols=75  Identities=16%  Similarity=0.181  Sum_probs=49.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEec-CCccceeeeEEEeEeeeCcEEEEEEeec------CCCeEEEEE
Q 005459          454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF-GDITQEQKIQSKGLLWLGKIIVVCNYID------SSNTYELLF  525 (696)
Q Consensus       454 ~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f-~~~~~e~~~~v~~~~w~~~~lv~~~~~~------~~~~~~lr~  525 (696)
                      ...+++|||.|+.+++|-..|++ -|...-..-+.. +.+..| .+.|.+++|......+..|..      .-+.|..++
T Consensus       200 ~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-~yrvl~v~Wl~t~eflvvy~n~ts~~~dpd~y~~~~  278 (1405)
T KOG3630|consen  200 SQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-NYRVLSVTWLSTQEFLVVYGNVTSETDDPDSYDQKM  278 (1405)
T ss_pred             ceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-CcceeEEEEecceeEEEEecccccCcCCchhhhhcc
Confidence            47899999999999999999999 887654422222 222233 567889999866544443421      224456677


Q ss_pred             eeCC
Q 005459          526 YPRY  529 (696)
Q Consensus       526 y~~~  529 (696)
                      |...
T Consensus       279 ~k~k  282 (1405)
T KOG3630|consen  279 YKIK  282 (1405)
T ss_pred             cccc
Confidence            7664

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=88.90  E-value=43  Score=37.31  Aligned_cols=72  Identities=15%  Similarity=0.166  Sum_probs=41.3

Q ss_pred             cEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEE---------cCCcEEEEEcc
Q 005459          269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGW---------KSRGLTVWSVS  337 (696)
Q Consensus       269 ~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~---------~Dg~v~vW~~~  337 (696)
                      ..+.+++.+|.|.-+|.++ ++.+-......      +...-..+.-+|  .+..++.++         .++.+...|..
T Consensus       111 ~~V~v~~~~g~v~AlD~~T-G~~~W~~~~~~------~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~  183 (488)
T cd00216         111 RKVFFGTFDGRLVALDAET-GKQVWKFGNND------QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVE  183 (488)
T ss_pred             CeEEEecCCCeEEEEECCC-CCEeeeecCCC------CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECC
Confidence            5777888999999999988 55543333211      100000111122  123444443         35778888988


Q ss_pred             CCeeEEEeec
Q 005459          338 GCRLMSTIRQ  347 (696)
Q Consensus       338 ~~~~~~~l~~  347 (696)
                      +++.+...+.
T Consensus       184 TG~~~W~~~~  193 (488)
T cd00216         184 TGKLLWRFYT  193 (488)
T ss_pred             CCceeeEeec
Confidence            8887776653

The alignment model contains an 8-bladed beta-propeller.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=88.08  E-value=34  Score=35.25  Aligned_cols=86  Identities=17%  Similarity=0.246  Sum_probs=41.1

Q ss_pred             CCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEe
Q 005459          266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI  345 (696)
Q Consensus       266 p~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l  345 (696)
                      .++..++.+ ..|.  ||...+.++..+.+..       +-.+.+..+.-++||+++|++..-.-..-|+..... ....
T Consensus       113 ~~~~~~l~~-~~G~--iy~T~DgG~tW~~~~~-------~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~  181 (302)
T PF14870_consen  113 GDGSAELAG-DRGA--IYRTTDGGKTWQAVVS-------ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPH  181 (302)
T ss_dssp             ETTEEEEEE-TT----EEEESSTTSSEEEEE--------S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEE
T ss_pred             CCCcEEEEc-CCCc--EEEeCCCCCCeeEccc-------CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEE
Confidence            334444433 3443  5666665666555443       256889999999999999998774445667653321 1111


Q ss_pred             ecccccceecccccCCC
Q 005459          346 RQISLSSISSPIVKPNQ  362 (696)
Q Consensus       346 ~~~~~~~v~~~~~sp~~  362 (696)
                      .-....+++++.|+|++
T Consensus       182 ~r~~~~riq~~gf~~~~  198 (302)
T PF14870_consen  182 NRNSSRRIQSMGFSPDG  198 (302)
T ss_dssp             E--SSS-EEEEEE-TTS
T ss_pred             ccCccceehhceecCCC
Confidence            11123456666676665

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=87.34  E-value=39  Score=34.99  Aligned_cols=87  Identities=15%  Similarity=0.055  Sum_probs=43.3

Q ss_pred             EEEEeeccCCceeeeeeeccee--cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCC
Q 005459          232 LMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG  308 (696)
Q Consensus       232 ~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g  308 (696)
                      ++.+....+.+..|+..+++..  .......+ ..+..++.++++  .. -+.+++.+. +..+..+....-+   ....
T Consensus        39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~--~~-g~~~~~~~~-~~~~t~~~~~~~~---~~~~  111 (307)
T COG3386          39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIAC--EH-GVRLLDPDT-GGKITLLAEPEDG---LPLN  111 (307)
T ss_pred             EEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEE--cc-ccEEEeccC-CceeEEeccccCC---CCcC
Confidence            4444455556666666544221  22223344 556666665554  22 345666654 4432322221100   0123


Q ss_pred             CeEEEEECCCCCeEEEE
Q 005459          309 PVSCIAWTPDNSAFAVG  325 (696)
Q Consensus       309 ~V~~l~~spdg~~lasg  325 (696)
                      .-+.+...|||..-++.
T Consensus       112 r~ND~~v~pdG~~wfgt  128 (307)
T COG3386         112 RPNDGVVDPDGRIWFGD  128 (307)
T ss_pred             CCCceeEcCCCCEEEeC
Confidence            46778889999876654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.24  E-value=36  Score=34.47  Aligned_cols=174  Identities=15%  Similarity=0.217  Sum_probs=94.3

Q ss_pred             EEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCc
Q 005459          211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESAS  290 (696)
Q Consensus       211 i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~  290 (696)
                      +.++.|+|..+.+.++...+..++--..+|.+     ..--.+.+-.++=.+++--++++.++-=.++++.++.++....
T Consensus        88 vS~LTynp~~rtLFav~n~p~~iVElt~~Gdl-----irtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL-----IRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             ccceeeCCCcceEEEecCCCceEEEEecCCce-----EEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            66666665555444444444433322222211     0001124445555578888888888888899999999887333


Q ss_pred             eeeEEe-eccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce
Q 005459          291 LIRTVS-LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL  369 (696)
Q Consensus       291 ~~~~~~-~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l  369 (696)
                      .+..-. ...++.........-.++|+|....|..+=+-+=++|+.+....  ..+..|       +...|.  .....+
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~--~~l~~~-------~~~~~~--~~~~~f  231 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP--SSLSVH-------ASLDPT--ADRDLF  231 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC--cccccc-------cccCcc--cccceE
Confidence            322111 11112222225567889999999999999888888888876432  111111       000111  111344


Q ss_pred             ecceeeEEEcCCCceEEEEecCCcceEEEEec
Q 005459          370 MSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF  401 (696)
Q Consensus       370 ~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~  401 (696)
                      +...+...++..++.++..... ...++.++.
T Consensus       232 ~~DvSgl~~~~~~~~LLVLS~E-Sr~l~Evd~  262 (316)
T COG3204         232 VLDVSGLEFNAITNSLLVLSDE-SRRLLEVDL  262 (316)
T ss_pred             eeccccceecCCCCcEEEEecC-CceEEEEec
Confidence            4445667777777777665422 233444443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=87.07  E-value=43  Score=35.17  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=19.1

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCccE
Q 005459          452 NWPVQHVAASKDGMFLAVAGLHGLI  476 (696)
Q Consensus       452 ~~~I~~va~s~dG~~la~ag~dG~i  476 (696)
                      ..+++.+++.|||...++-..+|.|
T Consensus       305 ~~r~~~v~~~pDG~Lyv~~d~~G~i  329 (331)
T PF07995_consen  305 GGRPRDVAQGPDGALYVSDDSDGKI  329 (331)
T ss_dssp             SS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred             CCCceEEEEcCCCeEEEEECCCCeE
Confidence            3479999999999988887777765

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.73  E-value=40  Score=38.46  Aligned_cols=56  Identities=20%  Similarity=0.380  Sum_probs=37.8

Q ss_pred             CCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCC
Q 005459          256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN  319 (696)
Q Consensus       256 ~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg  319 (696)
                      |+..+.+++||+.++||.=..+|.|.+=+++. .+..-.+...       ...+-..|+|.-+.
T Consensus       216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~~~-------~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFNCT-------DHDPPKQMAWCGND  271 (829)
T ss_pred             CceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccCCC-------CCCchHhceeecCC
Confidence            45566699999999999999999999988776 4433333321       12223367776544

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=86.54  E-value=1.6  Score=42.11  Aligned_cols=73  Identities=18%  Similarity=0.202  Sum_probs=49.6

Q ss_pred             CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeE-EEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459          268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR  346 (696)
Q Consensus       268 ~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~-~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~  346 (696)
                      +.-+++|+.+|.|.+|+....+.+......        -...|. -+.-..++.+..++..||.|+.|++.-.+.+....
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s--------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g  141 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS--------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG  141 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhc--------ccccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence            466899999999999998753333221111        111222 23333467788999999999999998888776666


Q ss_pred             cc
Q 005459          347 QI  348 (696)
Q Consensus       347 ~~  348 (696)
                      +|
T Consensus       142 ~h  143 (238)
T KOG2444|consen  142 QH  143 (238)
T ss_pred             cc
Confidence            55

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=86.38  E-value=2  Score=29.73  Aligned_cols=30  Identities=27%  Similarity=0.244  Sum_probs=25.8

Q ss_pred             CceEEEEEcCCC---CEEEEEeCCccE-EEEccC
Q 005459          453 WPVQHVAASKDG---MFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       453 ~~I~~va~s~dG---~~la~ag~dG~i-~w~~~s  482 (696)
                      +.||++.|||+.   .+||.+-..|.+ ++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            358999999854   499999999999 999986

It contains a characteristic DLL sequence motif.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=86.13  E-value=6  Score=39.81  Aligned_cols=60  Identities=20%  Similarity=0.205  Sum_probs=39.4

Q ss_pred             EEEcCCCcEEEEEecCCeEEEEEc-cCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459          262 ASIAPEQQILAVGTRRGVVELYDL-AESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK  327 (696)
Q Consensus       262 v~~sp~~~~la~g~~dg~v~vw~~-~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~  327 (696)
                      -+|++++.+.++...+...+++.. .+.......+..   +   .-.+.|..+++||||.++|.-..
T Consensus        71 PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~---~---~~~~~I~~l~vSpDG~RvA~v~~  131 (253)
T PF10647_consen   71 PSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDW---P---GLRGRITALRVSPDGTRVAVVVE  131 (253)
T ss_pred             ccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecc---c---ccCCceEEEEECCCCcEEEEEEe
Confidence            789999998888887777777742 221111111221   0   01228999999999999987763

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=85.88  E-value=7.7  Score=45.15  Aligned_cols=117  Identities=19%  Similarity=0.174  Sum_probs=72.6

Q ss_pred             CCceeeeeeecce---ecCCCCeEEEEEcCC-------CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCC
Q 005459          240 KGLKLAEFIKIDK---ELGSGDAVCASIAPE-------QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP  309 (696)
Q Consensus       240 ~~~~~~~~~~~~~---~~~~~~~v~v~~sp~-------~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~  309 (696)
                      ..+...|+..++.   |..|.+.....|.|+       ...-.+|-.+..+..||.+-.+..+..-..++  |.  ....
T Consensus       504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~--Y~--~~~~  579 (794)
T PF08553_consen  504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ--YS--SKNN  579 (794)
T ss_pred             CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc--cc--cCCC
Confidence            3344555555543   233343323444443       23456788888999999886332221112222  21  3455


Q ss_pred             eEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459          310 VSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       310 V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      ..|++-+.+| +||+|+.+|.||++|-.+.+.-..|.+-| .+|..+..+.||
T Consensus       580 Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG-~pI~~iDvt~DG  630 (794)
T PF08553_consen  580 FSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLG-DPIIGIDVTADG  630 (794)
T ss_pred             ceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCC-CCeeEEEecCCC
Confidence            7888888888 68999999999999976665555566653 568888888887

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=85.86  E-value=3  Score=39.21  Aligned_cols=30  Identities=33%  Similarity=0.481  Sum_probs=25.4

Q ss_pred             cccEEEEcCCCc------EEEEEecCcEEEEEEEEe
Q 005459           69 ENLQAVWSPDTK------LIAVVTSSLYLHIFKVQI   98 (696)
Q Consensus        69 ~~~~v~wsPDg~------~lav~t~dg~l~l~~l~~   98 (696)
                      .+++++|||-|=      .||+.|++|.|.||....
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            678999999552      799999999999998753

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=85.81  E-value=15  Score=42.71  Aligned_cols=80  Identities=24%  Similarity=0.277  Sum_probs=55.1

Q ss_pred             EE-EEEcCCCcEEEEEecCCeEEEEEccCC--------C-c--eeeEEeeccCCCCCCCCCCeEEEEECCC---CCeEEE
Q 005459          260 VC-ASIAPEQQILAVGTRRGVVELYDLAES--------A-S--LIRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAFAV  324 (696)
Q Consensus       260 v~-v~~sp~~~~la~g~~dg~v~vw~~~~~--------~-~--~~~~~~~~~~~~~~~h~g~V~~l~~spd---g~~las  324 (696)
                      |. +.+||+|++||..+..|.+.+.=-...        + .  ..+++.....-+..++...|..+.|.|.   +..|++
T Consensus        87 v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~v  166 (717)
T PF10168_consen   87 VHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVV  166 (717)
T ss_pred             EEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEE
Confidence            45 999999999999998876554322110        1 1  1223332222233456778999999996   589999


Q ss_pred             EEcCCcEEEEEccCC
Q 005459          325 GWKSRGLTVWSVSGC  339 (696)
Q Consensus       325 g~~Dg~v~vW~~~~~  339 (696)
                      -..|+++|+||+...
T Consensus       167 Ltsdn~lR~y~~~~~  181 (717)
T PF10168_consen  167 LTSDNTLRLYDISDP  181 (717)
T ss_pred             EecCCEEEEEecCCC
Confidence            999999999999653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=85.79  E-value=48  Score=34.50  Aligned_cols=183  Identities=17%  Similarity=0.152  Sum_probs=91.9

Q ss_pred             CcEEEEEec---------C-cEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEE
Q 005459           79 TKLIAVVTS---------S-LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG  148 (696)
Q Consensus        79 g~~lav~t~---------d-g~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~  148 (696)
                      -.+|++||+         . |.|.+|++.....            ....+++  ....   .-.+.|+++..-+++++++
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~------------~~~~l~~--i~~~---~~~g~V~ai~~~~~~lv~~  104 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPE------------NNFKLKL--IHST---EVKGPVTAICSFNGRLVVA  104 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----------------EEEE--EEEE---EESS-EEEEEEETTEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccc------------cceEEEE--EEEE---eecCcceEhhhhCCEEEEe
Confidence            578999885         2 9999999975310            0001111  1111   1245788888888886665


Q ss_pred             ecCCcEEEEecCCcc-ccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEE
Q 005459          149 LSDGSLYSISWKGEF-YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY  227 (696)
Q Consensus       149 t~~g~i~~~~w~~~~-~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s  227 (696)
                      . ++.+.++.|+... ....+                                   .......+.++.            
T Consensus       105 ~-g~~l~v~~l~~~~~l~~~~-----------------------------------~~~~~~~i~sl~------------  136 (321)
T PF03178_consen  105 V-GNKLYVYDLDNSKTLLKKA-----------------------------------FYDSPFYITSLS------------  136 (321)
T ss_dssp             E-TTEEEEEEEETTSSEEEEE-----------------------------------EE-BSSSEEEEE------------
T ss_pred             e-cCEEEEEEccCcccchhhh-----------------------------------eecceEEEEEEe------------
Confidence            5 5788888887654 11110                                   001112344443            


Q ss_pred             eCCcEEEEeeccCCceeeeeee-ccee------cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCC------C--cee
Q 005459          228 SNGQLMSCSVSKKGLKLAEFIK-IDKE------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES------A--SLI  292 (696)
Q Consensus       228 ~dG~~~~~~~~d~~~~~~~~~~-~~~~------~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~------~--~~~  292 (696)
                      .-+..++++-....+.+..... ...+      ......+++.|-++++.++++..+|.+.++..+..      +  .+.
T Consensus       137 ~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~  216 (321)
T PF03178_consen  137 VFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLE  216 (321)
T ss_dssp             EETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEE
T ss_pred             ccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccce
Confidence            2244444444444444332211 1111      11122334777766679999999999999998731      1  122


Q ss_pred             eEEeeccCCCCCCC-CCCeEEE---EECCC--CC------eEEEEEcCCcEEEE
Q 005459          293 RTVSLYDWGYSMDD-TGPVSCI---AWTPD--NS------AFAVGWKSRGLTVW  334 (696)
Q Consensus       293 ~~~~~~~~~~~~~h-~g~V~~l---~~spd--g~------~lasg~~Dg~v~vW  334 (696)
                      ....-        | ...|+++   +..|.  +.      .++-+..+|+|-+-
T Consensus       217 ~~~~f--------~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  217 RISSF--------HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEE--------E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             eEEEE--------ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            22222        3 3457777   55562  22      36677788888744

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK10115 protease 2; Provisional

Probab=85.56  E-value=80  Score=36.88  Aligned_cols=56  Identities=16%  Similarity=0.240  Sum_probs=35.7

Q ss_pred             EEEcCCCcEEEEEecC-----CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459          262 ASIAPEQQILAVGTRR-----GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS  328 (696)
Q Consensus       262 v~~sp~~~~la~g~~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D  328 (696)
                      +.+|||+++||.+...     -+|++-|+.+ +..+...          ..+.-..++|++||+.|+-...+
T Consensus       132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t-g~~l~~~----------i~~~~~~~~w~~D~~~~~y~~~~  192 (686)
T PRK10115        132 MAITPDNTIMALAEDFLSRRQYGIRFRNLET-GNWYPEL----------LDNVEPSFVWANDSWTFYYVRKH  192 (686)
T ss_pred             EEECCCCCEEEEEecCCCcEEEEEEEEECCC-CCCCCcc----------ccCcceEEEEeeCCCEEEEEEec
Confidence            7899999999976432     3567777765 3322111          11111469999999988776553

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=85.27  E-value=2.1  Score=46.03  Aligned_cols=76  Identities=25%  Similarity=0.242  Sum_probs=45.4

Q ss_pred             ceEEEEEeCCcEEEEEccCeEE----EeecCCceeeEEEeec-ChHHHhh-c-ccccEEEE-----------cCCCcEEE
Q 005459           22 QQIIYFKVNNGLLLIASPCHIE----LWSSSQHKVRLGKYKR-DSESVQR-E-GENLQAVW-----------SPDTKLIA   83 (696)
Q Consensus        22 ~~~v~fs~dg~lla~~~~~~v~----iW~~~~~~~~l~~~~r-~~~sl~~-~-G~~~~v~w-----------sPDg~~la   83 (696)
                      ...+..||+|.++|.+..+.+.    -|+.......-..+.+ ....++. . ..+++++|           .||...||
T Consensus         4 ~~~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~   83 (415)
T PF14655_consen    4 DCSISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIA   83 (415)
T ss_pred             cceEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEE
Confidence            3457899999999999655433    3543111111111211 1122222 1 23455555           37889999


Q ss_pred             EEecCcEEEEEEEE
Q 005459           84 VVTSSLYLHIFKVQ   97 (696)
Q Consensus        84 v~t~dg~l~l~~l~   97 (696)
                      +|+++|+|++|...
T Consensus        84 VG~ssG~vrfyte~   97 (415)
T PF14655_consen   84 VGTSSGYVRFYTEN   97 (415)
T ss_pred             EEecccEEEEEecc
Confidence            99999999999975

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=84.92  E-value=46  Score=33.56  Aligned_cols=61  Identities=15%  Similarity=0.120  Sum_probs=40.3

Q ss_pred             CCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEec
Q 005459           30 NNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT   99 (696)
Q Consensus        30 dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~   99 (696)
                      .++.|++++++.|.+++...+..+.....        ...+..+.--|+-+.+++.+ |++|.+|++..-
T Consensus         6 ~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~--------~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l   66 (275)
T PF00780_consen    6 WGDRLLVGTEDGLYVYDLSDPSKPTRILK--------LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSL   66 (275)
T ss_pred             CCCEEEEEECCCEEEEEecCCccceeEee--------cceEEEEEEecccCEEEEEc-CCccEEEEchhh
Confidence            45666677777798888832322222111        12277888889888877775 599999999743

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=84.42  E-value=2.7  Score=29.06  Aligned_cols=31  Identities=16%  Similarity=0.360  Sum_probs=25.2

Q ss_pred             CCeEEEEECCCCC---eEEEEEcCCcEEEEEccC
Q 005459          308 GPVSCIAWTPDNS---AFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       308 g~V~~l~~spdg~---~lasg~~Dg~v~vW~~~~  338 (696)
                      |+|++++|||++.   .||-+-.-+-|-|+|+..
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            5799999998554   777777778899999874

It contains a characteristic DLL sequence motif.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=84.07  E-value=28  Score=38.52  Aligned_cols=104  Identities=17%  Similarity=0.302  Sum_probs=66.6

Q ss_pred             cEEEEEccCeEEEeecCCcee-----eEEEe---ecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCccc
Q 005459           32 GLLLIASPCHIELWSSSQHKV-----RLGKY---KRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI  103 (696)
Q Consensus        32 ~lla~~~~~~v~iW~~~~~~~-----~l~~~---~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~  103 (696)
                      .|||+-..+.|.||.+- +..     .+...   .|.+..+--    ....|.|....|++-|+...=.+++++.++.+.
T Consensus        74 aLLAVQHkkhVtVWqL~-~s~~e~~K~l~sQtcEi~e~~pvLp----QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srV  148 (671)
T PF15390_consen   74 ALLAVQHKKHVTVWQLC-PSTTERNKLLMSQTCEIREPFPVLP----QGCVWHPKKAILTVLTARDVSVLPSVHCDSSRV  148 (671)
T ss_pred             ceEEEeccceEEEEEec-cCccccccceeeeeeeccCCcccCC----CcccccCCCceEEEEecCceeEeeeeeeCCceE
Confidence            58998899999999984 321     11111   111111111    347899999999999999877888988665321


Q ss_pred             ccCCCCCCCceeeeeeEEEeeeccccccceeE--EEeeeCCCeEEEEecCCcEEEEecCCcc
Q 005459          104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDGSLYSISWKGEF  163 (696)
Q Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~~~~~~llv~t~~g~i~~~~w~~~~  163 (696)
                      -                   ..  ++ ..+.|  -|+..||.+++++..+ .++.|-||...
T Consensus       149 k-------------------aD--i~-~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~q  187 (671)
T PF15390_consen  149 K-------------------AD--IK-TSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSAQ  187 (671)
T ss_pred             E-------------------Ee--cc-CCceEEEEEecCcCCEEEEEeCC-eEEEEEecCch
Confidence            1                   00  11 11223  3567799999998866 78888898643

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=83.75  E-value=13  Score=42.04  Aligned_cols=84  Identities=19%  Similarity=0.360  Sum_probs=55.7

Q ss_pred             cccceeeeCCCCCCCCCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEc--CCCcE
Q 005459            5 YGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWS--PDTKL   81 (696)
Q Consensus         5 ~g~p~~~~~~~~~~~~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~ws--PDg~~   81 (696)
                      ++|-+.-..+.+.  +..+.+..|.-++.-.+- +..++.|||.+ .+.  -.+.   +.+.+++.+.++.|.  |||+.
T Consensus        17 ~~w~~t~~~~T~i--~~~~li~gss~~k~a~V~~~~~~LtIWD~~-~~~--lE~~---~~f~~~~~I~dLDWtst~d~qs   88 (631)
T PF12234_consen   17 IEWLLTSTFETGI--SNPSLISGSSIKKIAVVDSSRSELTIWDTR-SGV--LEYE---ESFSEDDPIRDLDWTSTPDGQS   88 (631)
T ss_pred             EEEEEEEEEecCC--CCcceEeecccCcEEEEECCCCEEEEEEcC-CcE--EEEe---eeecCCCceeeceeeecCCCCE
Confidence            4566655555542  344556677766554444 35689999996 443  2222   234567899999884  89998


Q ss_pred             EEEEecCcEEEEEEE
Q 005459           82 IAVVTSSLYLHIFKV   96 (696)
Q Consensus        82 lav~t~dg~l~l~~l   96 (696)
                      |...+-..+|.+|.-
T Consensus        89 iLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   89 ILAVGFPHHVLLYTQ  103 (631)
T ss_pred             EEEEEcCcEEEEEEc
Confidence            877778889999864

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=83.53  E-value=68  Score=34.41  Aligned_cols=115  Identities=13%  Similarity=0.101  Sum_probs=69.1

Q ss_pred             EEEEeCCc-EEEEeeccCCceeeeeeeccee--------cCCCCeEEEEEcCCCcEEEEEecC---CeEEEEEccCCCce
Q 005459          224 FVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE--------LGSGDAVCASIAPEQQILAVGTRR---GVVELYDLAESASL  291 (696)
Q Consensus       224 ~~~s~dG~-~~~~~~~d~~~~~~~~~~~~~~--------~~~~~~v~v~~sp~~~~la~g~~d---g~v~vw~~~~~~~~  291 (696)
                      ++++|+|. ++++...+.++.+.+......+        .-...+-.++++|+++.+-+....   +.+...|..+ ...
T Consensus       165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v  243 (381)
T COG3391         165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNV  243 (381)
T ss_pred             EEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceE
Confidence            45667777 3333334555555553322211        112233348999999966665544   5888888776 333


Q ss_pred             eeE-EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC-CcEEEEEccCCeeEEEeec
Q 005459          292 IRT-VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVWSVSGCRLMSTIRQ  347 (696)
Q Consensus       292 ~~~-~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D-g~v~vW~~~~~~~~~~l~~  347 (696)
                      ... ...        -++....+..+|+|+.+.+.... +++.+-|..+.....+...
T Consensus       244 ~~~~~~~--------~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~  293 (381)
T COG3391         244 TATDLPV--------GSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT  293 (381)
T ss_pred             EEecccc--------ccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence            332 122        11145668999999998888444 8888888888776665543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=83.34  E-value=18  Score=37.39  Aligned_cols=90  Identities=14%  Similarity=0.218  Sum_probs=54.5

Q ss_pred             EEEcCCCcEEEEEec-CCeEEEEEccC-CCcee--eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC-cEEEEEc
Q 005459          262 ASIAPEQQILAVGTR-RGVVELYDLAE-SASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-GLTVWSV  336 (696)
Q Consensus       262 v~~sp~~~~la~g~~-dg~v~vw~~~~-~~~~~--~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg-~v~vW~~  336 (696)
                      ++||||++.|-..-. .+.|.-|+++. .+...  +....     ...+.|..-.++...||++-+++..+| .|.+|+.
T Consensus       168 la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~-----~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p  242 (307)
T COG3386         168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD-----FDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP  242 (307)
T ss_pred             eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE-----ccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence            999999977776654 47888887762 11110  10111     001456666777888888875554444 8999998


Q ss_pred             cCCeeEEEeecccccceecccc
Q 005459          337 SGCRLMSTIRQISLSSISSPIV  358 (696)
Q Consensus       337 ~~~~~~~~l~~~~~~~v~~~~~  358 (696)
                      . ++++..++-. ...+++++|
T Consensus       243 d-G~l~~~i~lP-~~~~t~~~F  262 (307)
T COG3386         243 D-GKLLGEIKLP-VKRPTNPAF  262 (307)
T ss_pred             C-CcEEEEEECC-CCCCccceE
Confidence            8 6666666544 133455554

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=83.17  E-value=21  Score=37.19  Aligned_cols=101  Identities=17%  Similarity=0.191  Sum_probs=66.9

Q ss_pred             CCEEEEEeC---------C-ccE-EEEccCC-----ceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEee
Q 005459          464 GMFLAVAGL---------H-GLI-LYDIRQK-----KWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYP  527 (696)
Q Consensus       464 G~~la~ag~---------d-G~i-~w~~~sg-----~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~  527 (696)
                      -.++++|..         . |.+ +|++...     ++++...  .+.+..|..++-+++.++++  .+    ..|.+|.
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~--~~~~g~V~ai~~~~~~lv~~--~g----~~l~v~~  113 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS--TEVKGPVTAICSFNGRLVVA--VG----NKLYVYD  113 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE--EEESS-EEEEEEETTEEEEE--ET----TEEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE--EeecCcceEhhhhCCEEEEe--ec----CEEEEEE
Confidence            467887764         2 889 9999884     4554332  22334477888888887776  21    5788887


Q ss_pred             CCCCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459          528 RYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL  572 (696)
Q Consensus       528 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~  572 (696)
                      .+.-..-........+..++.+...+++++++..-..+.++.+..
T Consensus       114 l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~  158 (321)
T PF03178_consen  114 LDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE  158 (321)
T ss_dssp             EETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred             ccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence            751111112233445556788889999999999889999998864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=83.08  E-value=1.3  Score=50.63  Aligned_cols=75  Identities=13%  Similarity=0.212  Sum_probs=46.4

Q ss_pred             EeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEE
Q 005459          137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL  216 (696)
Q Consensus       137 ~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  216 (696)
                      .+.+..-++-++.++|.++++.|+.....-+.                                     .|...+++|++
T Consensus       190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~r-------------------------------------sHs~~~~d~a~  232 (1283)
T KOG1916|consen  190 PIAVNKVYICYGLKGGEIRLLNINRALRSLFR-------------------------------------SHSQRVTDMAF  232 (1283)
T ss_pred             ccccccceeeeccCCCceeEeeechHHHHHHH-------------------------------------hcCCCcccHHH
Confidence            44555566777788899999999854432110                                     11222223222


Q ss_pred             cc-CcceEEEEEeCCcEEEEeeccCCceeeeee
Q 005459          217 CL-PMRLLFVLYSNGQLMSCSVSKKGLKLAEFI  248 (696)
Q Consensus       217 ~~-~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~  248 (696)
                      -. .+....-++|||+.+++.+.||.++.|..-
T Consensus       233 ~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  233 FAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             HhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            11 112233489999999999999999988753

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=82.66  E-value=67  Score=33.69  Aligned_cols=60  Identities=15%  Similarity=0.146  Sum_probs=38.5

Q ss_pred             CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459          267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL  331 (696)
Q Consensus       267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v  331 (696)
                      ++++++.....+.|....++..++....-...     .+..+.+..|++.|||...++-..+|.|
T Consensus       270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~r~~~v~~~pDG~Lyv~~d~~G~i  329 (331)
T PF07995_consen  270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL-----GGFGGRPRDVAQGPDGALYVSDDSDGKI  329 (331)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEEEC-----TTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred             cCcEEEecCCCCEEEEEeeecCCCccceEEcc-----ccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence            45677777767788888876533322211110     1244589999999999999988888876

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=82.29  E-value=26  Score=33.82  Aligned_cols=61  Identities=20%  Similarity=0.355  Sum_probs=41.9

Q ss_pred             EEeCCcEEEEEccCeEEEeecCCc-eeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecC---c---EEEEE
Q 005459           27 FKVNNGLLLIASPCHIELWSSSQH-KVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---L---YLHIF   94 (696)
Q Consensus        27 fs~dg~lla~~~~~~v~iW~~~~~-~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~d---g---~l~l~   94 (696)
                      .+..+.||++++...|.+|++.+. ..++..+       .+-|.+..+..+.-|.+|++.-.+   .   ++|+|
T Consensus        25 ~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F-------~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y   92 (215)
T PF14761_consen   25 CGGPDALFVAASGCKVEVYDLEQEECPLLCTF-------STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY   92 (215)
T ss_pred             ccCCceEEEEcCCCEEEEEEcccCCCceeEEE-------cchhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence            344355666677788999998622 2333433       234788899999999999995432   3   78887

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=81.96  E-value=2.2  Score=26.29  Aligned_cols=24  Identities=33%  Similarity=0.320  Sum_probs=18.9

Q ss_pred             ccEEEEcCCCcEEEEEecCcEEEEEE
Q 005459           70 NLQAVWSPDTKLIAVVTSSLYLHIFK   95 (696)
Q Consensus        70 ~~~v~wsPDg~~lav~t~dg~l~l~~   95 (696)
                      +.+++-++  +++|++|+.++||+|.
T Consensus         4 i~aia~g~--~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    4 IEAIAAGD--SWVAVATSAGYLRIFS   27 (27)
T ss_pred             EEEEEccC--CEEEEEeCCCeEEecC
Confidence            34566654  6999999999999984

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=81.94  E-value=5.9  Score=44.90  Aligned_cols=81  Identities=16%  Similarity=0.214  Sum_probs=46.2

Q ss_pred             CCCcEEEEEecCCeEEEEEccC---CCceeeEEeeccC-------CC-------CCCCCCCeEEEEECC----CCCeEEE
Q 005459          266 PEQQILAVGTRRGVVELYDLAE---SASLIRTVSLYDW-------GY-------SMDDTGPVSCIAWTP----DNSAFAV  324 (696)
Q Consensus       266 p~~~~la~g~~dg~v~vw~~~~---~~~~~~~~~~~~~-------~~-------~~~h~g~V~~l~~sp----dg~~las  324 (696)
                      ++...++++..||.+.......   .+.........+.       +.       .....+.+..++.++    +..+|++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4566777788888877777654   1221111111000       00       001234567777777    7789999


Q ss_pred             EEcCCcEEEEEccCCeeEEEee
Q 005459          325 GWKSRGLTVWSVSGCRLMSTIR  346 (696)
Q Consensus       325 g~~Dg~v~vW~~~~~~~~~~l~  346 (696)
                      -+.|+++|+||+.+++++.+..
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999876653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.80  E-value=82  Score=36.08  Aligned_cols=52  Identities=13%  Similarity=0.359  Sum_probs=36.7

Q ss_pred             CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe
Q 005459          278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR  340 (696)
Q Consensus       278 g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~  340 (696)
                      -.|+||+..  |.++..+.-        ..+.+-.|.||.|-+ |..-.+||++.|++..+..
T Consensus        64 ~~I~If~~s--G~lL~~~~w--------~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~  115 (829)
T KOG2280|consen   64 PYIRIFNIS--GQLLGRILW--------KHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEF  115 (829)
T ss_pred             eeEEEEecc--ccchHHHHh--------cCCCeeeecccCCce-EEEEeccceEEEeecchhh
Confidence            357888765  455544443        334889999997754 5556788999999987753

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.27  E-value=22  Score=37.98  Aligned_cols=71  Identities=17%  Similarity=0.135  Sum_probs=51.9

Q ss_pred             EEEEeCCcEEEEEccCeEEEeecCCc--eeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCc
Q 005459           25 IYFKVNNGLLLIASPCHIELWSSSQH--KVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK  101 (696)
Q Consensus        25 v~fs~dg~lla~~~~~~v~iW~~~~~--~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~  101 (696)
                      +.|.-.++++.++..+.+.=|-+..|  .+++....      ...|++.++.||||.+.||+.-++..+.+++...++.
T Consensus        28 vFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm------~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~  100 (657)
T KOG2377|consen   28 VFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDM------DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS  100 (657)
T ss_pred             eeeccCcceEEEEecCCeeEEEEeCCCCCCCceeee------cCCCceeEEEeccCcceEEEEecCceEEEEecCCCch
Confidence            66776677666666666777776422  23443322      2468999999999999999999999999999876554

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=81.09  E-value=2.4  Score=28.45  Aligned_cols=28  Identities=29%  Similarity=0.564  Sum_probs=19.0

Q ss_pred             cccccEEEEcCCCcEEEEEecC---cEEEEE
Q 005459           67 EGENLQAVWSPDTKLIAVVTSS---LYLHIF   94 (696)
Q Consensus        67 ~G~~~~v~wsPDg~~lav~t~d---g~l~l~   94 (696)
                      .+......|||||+.|+-.+..   |.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            3556789999999998887654   444444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=80.99  E-value=1.2e+02  Score=35.68  Aligned_cols=78  Identities=13%  Similarity=0.091  Sum_probs=42.5

Q ss_pred             CcEEEEEecCCeEEEEEccCCCceeeEEeec---cCCCCCC-CCCCeEEEEECC--CCCeEEEEEc----------CCcE
Q 005459          268 QQILAVGTRRGVVELYDLAESASLIRTVSLY---DWGYSMD-DTGPVSCIAWTP--DNSAFAVGWK----------SRGL  331 (696)
Q Consensus       268 ~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~---~~~~~~~-h~g~V~~l~~sp--dg~~lasg~~----------Dg~v  331 (696)
                      +..|.+++.|+.+.-.|.++ ++....+...   ++....+ +...-..+.-+|  .+..+++|+.          +|.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~T-Gk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADT-GKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCC-CCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            44777888899888888877 5554433210   0000000 000001112223  2334555532          5789


Q ss_pred             EEEEccCCeeEEEee
Q 005459          332 TVWSVSGCRLMSTIR  346 (696)
Q Consensus       332 ~vW~~~~~~~~~~l~  346 (696)
                      +-+|+.+++++..+.
T Consensus       339 ~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       339 RAFDVNTGALVWAWD  353 (764)
T ss_pred             EEEECCCCcEeeEEe
Confidence            999999999887765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=80.48  E-value=42  Score=29.85  Aligned_cols=115  Identities=15%  Similarity=0.175  Sum_probs=63.1

Q ss_pred             EEcCCCcEEEEEecCCeEEEEEccCC-------CceeeEEeeccCCCCCCCCCCeEEEEECC-----CCCeEEEEEcCCc
Q 005459          263 SIAPEQQILAVGTRRGVVELYDLAES-------ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-----DNSAFAVGWKSRG  330 (696)
Q Consensus       263 ~~sp~~~~la~g~~dg~v~vw~~~~~-------~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-----dg~~lasg~~Dg~  330 (696)
                      .|.....-||.++.-|+|.|++....       ...++.+..         ...|++|+-.|     +...|+.|+. ..
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---------n~~italaaG~l~~~~~~D~LliGt~-t~   74 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---------NQEITALAAGRLKPDDGRDCLLIGTQ-TS   74 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC---------CCceEEEEEEecCCCCCcCEEEEecc-ce
Confidence            34445556888888889999876531       123344443         34577775433     3457888887 68


Q ss_pred             EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEe
Q 005459          331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIE  389 (696)
Q Consensus       331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~  389 (696)
                      +..+|+....-+..- +- .+.|+++.+-.-+......++.|.  .+.-+|.++.+++.+.
T Consensus        75 llaYDV~~N~d~Fyk-e~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   75 LLAYDVENNSDLFYK-EV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             EEEEEcccCchhhhh-hC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            999999766433211 11 234555554322221123344444  4444566666655443

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.23  E-value=90  Score=33.59  Aligned_cols=66  Identities=14%  Similarity=0.198  Sum_probs=44.1

Q ss_pred             Ceeee-cCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccc-eeeeEEEeEeeeCcEEE
Q 005459          445 PVSYI-SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQ-EQKIQSKGLLWLGKIIV  510 (696)
Q Consensus       445 ~~~~~-~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~-e~~~~v~~~~w~~~~lv  510 (696)
                      |..+. ...++|+++.||+|.+.+|+--.+..+ +++.....-++-.+.++ .....+.|++|....-+
T Consensus        58 piSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~  126 (657)
T KOG2377|consen   58 PISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEI  126 (657)
T ss_pred             CceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeE
Confidence            44443 456799999999999999999999999 99874332222222111 22233679999765433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	696
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	2e-05
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	1e-04
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 2e-10
 Identities = 88/617 (14%), Positives = 171/617 (27%), Gaps = 204/617 (33%)

Query: 5   YGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESV 64
           Y +       +   PS    +Y                 L++ +Q      KY     +V
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMY-----------IEQRDRLYNDNQ---VFAKY-----NV 131

Query: 65  QREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNE 124
            R             +    +  +L     +++   K++ I G   SG    K  + L+ 
Sbjct: 132 SRL------------QPYLKLRQALL----ELR-PAKNVLIDGVLGSG----KTWVALD- 169

Query: 125 QLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS------- 177
                         V  +  +   +       I W          ++  N +S       
Sbjct: 170 --------------VCLSYKVQCKMDFK----IFW----------LNLKNCNSPETVLEM 201

Query: 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL--YSNGQLMSC 235
           +  L +    N  +  D S    S+ K  I S    L      R L     Y N  L+  
Sbjct: 202 LQKLLYQIDPNWTSRSDHS----SNIKLRIHSIQAEL------RRLLKSKPYENCLLVLL 251

Query: 236 SVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTR-RGVVELYDLAESASLIRT 294
           +V         F          +  C       +IL + TR + V +   L+ + +   +
Sbjct: 252 NVQNAKA-WNAF----------NLSC-------KIL-LTTRFKQVTD--FLSAATTTHIS 290

Query: 295 VSLYDWGYSMDDT----------------------GP--VSCIAWTPDNSAFAVGWKSRG 330
           +  +    + D+                        P  +S IA             +  
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA------ESIRDGLAT- 343

Query: 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPN-QDC----KYEPLMSGTSMMQWDEYGYRL 385
              W    C  ++TI + SL+ +     +              + +    + W +     
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD----- 398

Query: 386 YAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL--KIL-HL 442
             + +     V+        + +     T +   I      L V+ E+   L   I+ H 
Sbjct: 399 --VIKSDVMVVVNKLHKYSLVEKQPKESTIS---IPSIYLELKVKLENEYALHRSIVDHY 453

Query: 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQ-KKWRVFGDITQ-----EQK 496
           N+P ++ S +    ++    D  F +  G H   L +I   ++  +F  +       EQK
Sbjct: 454 NIPKTFDSDDLIPPYL----DQYFYSHIGHH---LKNIEHPERMTLFRMVFLDFRFLEQK 506

Query: 497 IQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYI 556
           I+     W                                    S+L     +  Y+ YI
Sbjct: 507 IRHDSTAWN--------------------------------ASGSILNTLQQLKFYKPYI 534

Query: 557 LVTYRPFDVHIFHVKLF 573
                 ++  +  +  F
Sbjct: 535 CDNDPKYERLVNAILDF 551

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 5e-06
 Identities = 61/344 (17%), Positives = 107/344 (31%), Gaps = 112/344 (32%)

Query: 407 NRGVSGMT----YARQVIYGEDRLL----VVQSEDTDELKILHLNL-PVSYISQNWPVQH 457
            R  S MT      R  +Y ++++     V + +   +L+   L L P   +     +  
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-----LID 156

Query: 458 VAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSK---GLLWL--GK----- 507
                 G+     G  G        K W    D+    K+Q K    + WL         
Sbjct: 157 ------GV----LGS-G--------KTWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 508 -IIV----VCNYIDSSNTYELLFYPRYHLDQSS-------LLCRK----SLLAKPIVMDV 551
            ++     +   ID + T          L   S       LL  K     LL   ++++V
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---VLLNV 253

Query: 552 YE-------DY---ILVTYRPFDV----------HIFHVKLFGELTPSTTPDLQLS---- 587
                    +    IL+T R   V          HI        LTP     L L     
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 588 TVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSS--DMLAREPARCLILRANGELS 645
             ++L      ++P  +  I +      S+ + ++T      +  +    +I     E S
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAE------SIRDGLATWDNWKHVNCDKLTTII-----ESS 362

Query: 646 LLDLDDGRERELTDSVELFWVTCGQLEEKTSLIE----EVSWLD 685
           L  L+    R++ D + +F          ++ I      + W D
Sbjct: 363 LNVLEPAEYRKMFDRLSVF--------PPSAHIPTILLSLIWFD 398

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 8e-06
 Identities = 41/287 (14%), Positives = 83/287 (28%), Gaps = 81/287 (28%)

Query: 433 DTDEL-----KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRV 487
           +T E       IL +         N+  + V      +       H ++  D      R+
Sbjct: 10  ETGEHQYQYKDILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 488 FGDITQEQKIQSKGLL---------WL-GKIIVVCN--------YIDSSNTYELLF---- 525
           F  +  +Q+   +  +         +L   I             YI+  +    L+    
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR---LYNDNQ 124

Query: 526 -YPRYHLD--------QSSLL---------------CRKSLLAKPIVMDVYEDYILVTYR 561
            + +Y++         + +LL                 K+ +A     DV   Y +    
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL----DVCLSYKVQCKM 180

Query: 562 PFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHV 621
            F   IF +          +P+  L  +++L            +  P+   R    +N  
Sbjct: 181 DF--KIFWLN-LKN---CNSPETVLEMLQKLL----------YQIDPNWTSRSDHSSNIK 224

Query: 622 STSSDMLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWVTC 668
                   +   R L+     E  LL L + +  +       F ++C
Sbjct: 225 LRIHS--IQAELRRLLKSKPYENCLLVLLNVQNAKA---WNAFNLSC 266

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 47.2 bits (111), Expect = 2e-05
 Identities = 27/191 (14%), Positives = 59/191 (30%), Gaps = 8/191 (4%)

Query: 160 KGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP 219
           K + +   E       S   A +  F  N LA    +G  V  +       +I LE    
Sbjct: 2   KNKIFSLAETNKYGMSSKPIAAAFDFTQNLLAIATVTGE-VHIYGQQQVEVVIKLEDRSA 60

Query: 220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIK---IDKELGSGDAVCASIAPEQQILAVGTR 276
           ++   + +  G  +    +K  + +        +      G             + +G +
Sbjct: 61  IK--EMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQ 118

Query: 277 RGVVELYDLA-ESASLIRTVSLYDWGYSMD-DTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334
            G + +YD+  +  S  +  +L    +       P+  I W P +    +         +
Sbjct: 119 NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLTY 178

Query: 335 SVSGCRLMSTI 345
           S+    +  + 
Sbjct: 179 SLVENEIKQSF 189

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 26/248 (10%), Positives = 72/248 (29%), Gaps = 28/248 (11%)

Query: 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA 321
            S+  ++ +       G +    L +S ++    +           G    I      + 
Sbjct: 42  KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRT-----GGEHPAIISRGPCNR 96

Query: 322 FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEY 381
             + +    +T+      +++  I   S + I         + +Y   +   +       
Sbjct: 97  LLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEY--FIWADNRGTI--- 151

Query: 382 GYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGED-RLLVVQSEDTD----E 436
                + E+ S   V          +   S     +      D  LL + S D       
Sbjct: 152 --GFQSYEDDSQYIVHSAK-----SDVEYSSGVLHK------DSLLLALYSPDGILDVYN 198

Query: 437 LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQK 496
           L           + +   ++ V  + +G ++ V     ++ +D+R+    +        +
Sbjct: 199 LSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPE 258

Query: 497 IQSKGLLW 504
            ++  + +
Sbjct: 259 FKTGTVTY 266

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 41.7 bits (97), Expect = 6e-04
 Identities = 26/260 (10%), Positives = 74/260 (28%), Gaps = 23/260 (8%)

Query: 125 QLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAF--ELVHSSNDSSVAALS 182
             P+ E   S+     D    +    DG+L+    K              +     A +S
Sbjct: 34  TFPYKELNKSMY---YDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIIS 90

Query: 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG- 241
               +  L     +   + D K       I ++    +  ++               +G 
Sbjct: 91  RGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGT 150

Query: 242 -----LKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS 296
                 +      +       +     +  +  +LA+ +  G++++Y+L  S     +  
Sbjct: 151 IGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNL-SSPDQASSR- 208

Query: 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV--SGCRLMSTIRQISLSSIS 354
                + +D+   +  + +  +     V    + +  + +      L      I      
Sbjct: 209 -----FPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTG 262

Query: 355 SPIVKPNQDCKYEPLMSGTS 374
           +     +   K   +++ ++
Sbjct: 263 TVTYDIDDSGKN--MIAYSN 280

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	696
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.98
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.98
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.98
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.98
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.98
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.98
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.96
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.96
2pm7_B	297	Protein transport protein SEC13, protein transport	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.96
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.96
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.96
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.96
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.96
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.95
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.95
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.95
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.95
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.95
2pm7_B	297	Protein transport protein SEC13, protein transport	99.95
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.95
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.95
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.95
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.95
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.94
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.94
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.94
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.94
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.94
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.93
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.93
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.93
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.93
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.93
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.93
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.93
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.93
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.93
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.93
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.93
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.93
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.92
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.92
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.92
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.92
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.92
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.92
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.91
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.91
3jro_A	753	Fusion protein of protein transport protein SEC13	99.91
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.9
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.9
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.89
3jro_A	753	Fusion protein of protein transport protein SEC13	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.89
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.89
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.87
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.87
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.87
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.87
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.86
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.86
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.86
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.82
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.8
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.79
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.79
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.77
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.74
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.74
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.74
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.73
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.72
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.71
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.71
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.71
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.7
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.7
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.7
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.7
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.68
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.68
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.68
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.67
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.66
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.66
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.65
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.65
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.64
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.64
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.61
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.61
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.6
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.6
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.57
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.55
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.54
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.49
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.46
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.46
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.45
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.42
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.38
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.37
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.36
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.31
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.3
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.29
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.29
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.28
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.28
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.25
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.23
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.19
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.17
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.17
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.15
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.13
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.13
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.12
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.09
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.08
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.07
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.04
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.03
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.03
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.02
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.99
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.97
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.95
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.93
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.91
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.91
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.86
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.84
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.81
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.8
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.8
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.79
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.75
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.71
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.67
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.65
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.65
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.63
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.57
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.55
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.55
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.54
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.53
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.52
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.48
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.46
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.44
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.37
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.36
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.29
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.24
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.14
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.13
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.13
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.03
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.98
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.97
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.94
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.92
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.9
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.86
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.82
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.82
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.81
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.78
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.73
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.7
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.66
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.63
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.54
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.4
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.27
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.25
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.25
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.22
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.22
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.22
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.19
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.09
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.99
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	96.97
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.93
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.85
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.78
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.77
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.74
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.74
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.68
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.65
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.62
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.59
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.54
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.44
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.39
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.39
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.34
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.24
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.1
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.04
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	95.98
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.97
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	95.76
3v65_B	386	Low-density lipoprotein receptor-related protein;	95.58
3v65_B	386	Low-density lipoprotein receptor-related protein;	94.68
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	94.56
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	94.5
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.97
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.47
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	93.26
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	93.05
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	92.88
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.87
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	92.81
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	92.05
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	91.91
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	91.62
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.49
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	91.22
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	90.27
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	90.12
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	89.88
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	89.76
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	89.55
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	89.42
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	89.25
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	89.18
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	88.89
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	87.98
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	87.79
3kya_A	496	Putative phosphatase; structural genomics, joint c	86.79
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	86.17
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	85.37
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	84.64
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	83.82
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	83.78
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	83.65
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	82.59
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	81.82
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	80.57

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.1e-43  Score=398.90  Aligned_cols=471  Identities=11%  Similarity=0.070  Sum_probs=330.2

Q ss_pred             eeeeCCCCCCCCCceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecC
Q 005459            9 QVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS   88 (696)
Q Consensus         9 ~~~~~~~~~~~~~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~d   88 (696)
                      +.++..+....+....++|||||++||+++++++.||+.. ....+..+.      .+.+.+.+++|||||++||+++.|
T Consensus         8 ~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~-~~~~~~~~~------~h~~~v~~~~~spdg~~lasg~~d   80 (611)
T 1nr0_A            8 ALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVG-SLTDTEIYT------EHSHQTTVAKTSPSGYYCASGDVH   80 (611)
T ss_dssp             EEECCCCCCCTTCCCCCEECTTSSEEEEEETTEEEEEETT-CSSCCEEEC------CCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cEECCCCCcccCceeEEeeCCCCCEEEeCCCCEEEEecCC-CcccCeEec------CCCCceEEEEECCCCcEEEEEeCC
Confidence            3444333333445555889999999999988899999995 333333332      134678899999999999999999


Q ss_pred             cEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCCeEEEEecCC--cEEEEecCCccc
Q 005459           89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDG--SLYSISWKGEFY  164 (696)
Q Consensus        89 g~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~~llv~t~~g--~i~~~~w~~~~~  164 (696)
                      |+|+|||+..+.....           .      .    +..+...|.  +++++++.+++++.+.  ...++.|+....
T Consensus        81 ~~v~lWd~~~~~~~~~-----------~------~----~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~  139 (611)
T 1nr0_A           81 GNVRIWDTTQTTHILK-----------T------T----IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS  139 (611)
T ss_dssp             SEEEEEESSSTTCCEE-----------E------E----EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB
T ss_pred             CCEEEeECCCCcceee-----------E------e----ecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCC
Confidence            9999999864321100           0      0    112223343  5567788888877542  234455773211


Q ss_pred             cceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCc-EEEEeeccCCce
Q 005459          165 GAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLK  243 (696)
Q Consensus       165 ~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~  243 (696)
                      .                                    ..+..+...|.+++          |+|+|. .+++++.|++++
T Consensus       140 ~------------------------------------~~l~gh~~~v~~v~----------f~p~~~~~l~s~s~D~~v~  173 (611)
T 1nr0_A          140 N------------------------------------GNLTGQARAMNSVD----------FKPSRPFRIISGSDDNTVA  173 (611)
T ss_dssp             C------------------------------------BCCCCCSSCEEEEE----------ECSSSSCEEEEEETTSCEE
T ss_pred             c------------------------------------ceecCCCCCceEEE----------ECCCCCeEEEEEeCCCeEE
Confidence            0                                    12234555677765          678886 588999999999


Q ss_pred             eeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCC
Q 005459          244 LAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN  319 (696)
Q Consensus       244 ~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg  319 (696)
                      +|+....+.   +.+|.+.+. ++|+|++++||+|+.||+|++||+.+ ++.+..+.... ....+|.+.|.+++|+|||
T Consensus       174 lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~-g~~~~~~~~~~-~~~~~h~~~V~~v~~spdg  251 (611)
T 1nr0_A          174 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDS-LKNVAHSGSVFGLTWSPDG  251 (611)
T ss_dssp             EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCTT-SSSCSSSSCEEEEEECTTS
T ss_pred             EEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC-CcEeeeecccc-ccccccCCCEEEEEECCCC
Confidence            999765433   378998887 99999999999999999999999987 66666663100 0111399999999999999


Q ss_pred             CeEEEEEcCCcEEEEEccCCeeEEEe-------------------------------------------ecccccceecc
Q 005459          320 SAFAVGWKSRGLTVWSVSGCRLMSTI-------------------------------------------RQISLSSISSP  356 (696)
Q Consensus       320 ~~lasg~~Dg~v~vW~~~~~~~~~~l-------------------------------------------~~~~~~~v~~~  356 (696)
                      ++|++|+.|++|++||+.+++++.++                                           .+| ...|+++
T Consensus       252 ~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh-~~~v~~l  330 (611)
T 1nr0_A          252 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGH-NKAITAL  330 (611)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCC-SSCEEEE
T ss_pred             CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCC-CCCEEEE
Confidence            99999999999999999877665444                                           344 6779999


Q ss_pred             cccCCCCCCccceecce---eeEEEcCCCceEEEEe-cCCcceEEEEec--ceeeeeccCCCCceeeeeeecCC------
Q 005459          357 IVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE-EGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGED------  424 (696)
Q Consensus       357 ~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~-~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~------  424 (696)
                      +|+|++    +.+++++   ++++|+..++++.... .+|...+..+.+  ...+++++.|+++++|++..+..      
T Consensus       331 ~~spdg----~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~  406 (611)
T 1nr0_A          331 SSSADG----KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAV  406 (611)
T ss_dssp             EECTTS----SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCC
T ss_pred             EEeCCC----CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcccccccee
Confidence            999999    8899887   8999999998877665 568888855555  67889999999999998654321      


Q ss_pred             -------eEEE-Ee--------cCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEe
Q 005459          425 -------RLLV-VQ--------SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV  487 (696)
Q Consensus       425 -------~~~~-~~--------~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~  487 (696)
                             ...+ +.        +.+.....|...+ ... ..|...+.+++|||||++||+|+.||.+ +||+.+++.+.
T Consensus       407 ~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~-~~~-~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~  484 (611)
T 1nr0_A          407 ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK-LTE-VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE  484 (611)
T ss_dssp             EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE-EEE-EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE
T ss_pred             eeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCc-eee-eecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee
Confidence                   0000 00        0111112333222 112 2467789999999999999999999999 99999876543


Q ss_pred             cCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCC-CC--cc--ceeEEeecCCccEEEEccCCEEEEEE
Q 005459          488 FGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYH-LD--QS--SLLCRKSLLAKPIVMDVYEDYILVTY  560 (696)
Q Consensus       488 f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~-l~--~~--~~~~~~~~~~~~l~~~~~~~~llv~~  560 (696)
                      ....  .+.-.|..++|.  +.+|+++     +.+..+++|+... ..  ..  ...|...+.+  +.+++++.+|++++
T Consensus       485 ~~~~--~h~~~v~~v~fspdg~~las~-----s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~--v~fspdg~~lasgs  555 (611)
T 1nr0_A          485 VKTI--VHPAEITSVAFSNNGAFLVAT-----DQSRKVIPYSVANNFELAHTNSWTFHTAKVAC--VSWSPDNVRLATGS  555 (611)
T ss_dssp             EEEE--ECSSCEEEEEECTTSSEEEEE-----ETTSCEEEEEGGGTTEESCCCCCCCCSSCEEE--EEECTTSSEEEEEE
T ss_pred             eecc--CCCCceEEEEECCCCCEEEEE-----cCCCCEEEEEcCCCCceeeeeeeeecccceeE--EEECCCCCEEEEEE
Confidence            2221  222347788886  4566665     3447899998752 11  10  1114443433  78889999999999


Q ss_pred             cCceEEEEEEE
Q 005459          561 RPFDVHIFHVK  571 (696)
Q Consensus       561 ~d~~~~l~~~~  571 (696)
                      .|+.++||+++
T Consensus       556 ~D~~v~lW~~~  566 (611)
T 1nr0_A          556 LDNSVIVWNMN  566 (611)
T ss_dssp             TTSCEEEEETT
T ss_pred             CCCcEEEEECC
Confidence            99999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=9.4e-42  Score=386.67  Aligned_cols=485  Identities=16%  Similarity=0.202  Sum_probs=337.7

Q ss_pred             CCceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459           20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI   98 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~   98 (696)
                      +...-++|||||++||+++ |++|+|||..  +..+..+..      +.+.+.+++|+|||++||+++.|+.|+|||+..
T Consensus        17 ~~V~~~a~spdg~~las~~~d~~v~iWd~~--~~~~~~l~g------h~~~V~~l~fspdg~~las~~~d~~i~vWd~~~   88 (577)
T 2ymu_A           17 SSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTG------HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG   88 (577)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEECTT--SCEEEEEEC------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEECC--CCEEEEEeC------CCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            4566689999999999985 6789999974  344444432      347789999999999999999999999999632


Q ss_pred             cCcccccCCCC---------CCCceee-----------------------------eeeEEEeee---------------
Q 005459           99 TEKSIQIGGKQ---------PSGLFFI-----------------------------KISLVLNEQ---------------  125 (696)
Q Consensus        99 ~~~~~~~~~~~---------~~~~~~~-----------------------------~~~l~~~~~---------------  125 (696)
                       .......+|.         +.+..+.                             ...+.+...               
T Consensus        89 -~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  167 (577)
T 2ymu_A           89 -QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN  167 (577)
T ss_dssp             -CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             -CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceeccc
Confidence             2111111111         1111110                             000000000               


Q ss_pred             ------ccccccceeEE--EeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCC-cccccCC
Q 005459          126 ------LPFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG-LASVDTS  196 (696)
Q Consensus       126 ------~~~~~~~~~v~--~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~-l~~~~~~  196 (696)
                            .....+...+.  ++.++++.+++++.+|.+++|+.+++.....     ..+...+..+.|+++++ +++...+
T Consensus       168 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~-----~~~~~~v~~~~~s~dg~~l~~~~~d  242 (577)
T 2ymu_A          168 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL-----TGHSSSVRGVAFSPDGQTIASASDD  242 (577)
T ss_dssp             TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEE-----ECCSSCEEEEEECTTSSCEEEEETT
T ss_pred             cceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEE-----ecCCCCEEEEEECCCCCEEEEEeCC
Confidence                  00011122232  4566778899999999998865443322222     22344566777777765 3444433


Q ss_pred             CccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeec--ceecCCCCeEE-EEEcCCCcEEEE
Q 005459          197 GAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI--DKELGSGDAVC-ASIAPEQQILAV  273 (696)
Q Consensus       197 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~v~-v~~sp~~~~la~  273 (696)
                      +... .+. .....+..+.-.......+.++|||+.+++++.|+++++|+....  +.+.+|...+. ++|+|++++||+
T Consensus       243 ~~i~-~w~-~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t  320 (577)
T 2ymu_A          243 KTVK-LWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS  320 (577)
T ss_dssp             SCEE-EEC-TTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             CEEE-EEe-CCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEE
Confidence            2221 111 112222222222222345678899999999999999999985432  22368888887 999999999999


Q ss_pred             EecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccce
Q 005459          274 GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI  353 (696)
Q Consensus       274 g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v  353 (696)
                      ++.||+|++||.+.  ..+..+.+        |..+|.+++|+|||+.|++|+.|+.+++|+.. ++++.++.+| ...|
T Consensus       321 ~~~d~~i~~w~~~~--~~~~~~~~--------~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~~~-~~~v  388 (577)
T 2ymu_A          321 ASDDKTVKLWNRNG--QHLQTLTG--------HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH-SSSV  388 (577)
T ss_dssp             EETTSCEEEEETTS--CEEEEECC--------CSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEECC-SSCE
T ss_pred             EeCCCeEEEEeCCC--CeeEEEeC--------CCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEecCC-CCCe
Confidence            99999999999764  55666777        99999999999999999999999999999964 5678888888 6789


Q ss_pred             ecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEE--Eec-ceeeeeccCCCCceeeeeeecCCeEE
Q 005459          354 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLL  427 (696)
Q Consensus       354 ~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~  427 (696)
                      .+++|+|++    +.+++++   .+.+|+. +++++....+|...|..  |++ ++.+++++.|+++++|+. .++.   
T Consensus       389 ~~~~~s~dg----~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~---  459 (577)
T 2ymu_A          389 RGVAFSPDG----QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQL---  459 (577)
T ss_dssp             EEEEECTTS----SCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCE---
T ss_pred             EEEEECCCC----CEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCE---
Confidence            999999998    8888887   7899996 45777788899999854  555 788999999999999984 2221   


Q ss_pred             EEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee-
Q 005459          428 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL-  505 (696)
Q Consensus       428 ~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~-  505 (696)
                                       ...+.+|..+|++++|+|||++||+++.||.+ +||...+..+.+..  +  .-.|..++|. 
T Consensus       460 -----------------~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~--h--~~~v~~l~~s~  518 (577)
T 2ymu_A          460 -----------------LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG--H--SSSVRGVAFSP  518 (577)
T ss_dssp             -----------------EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEEC--C--SSCEEEEEECT
T ss_pred             -----------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeC--C--CCCEEEEEEcC
Confidence                             45677899999999999999999999999999 99975543333321  1  2237788886 


Q ss_pred             -CcEEEEEEeecCCCeEEEEEeeCC-CCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEE
Q 005459          506 -GKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFH  569 (696)
Q Consensus       506 -~~~lv~~~~~~~~~~~~lr~y~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~  569 (696)
                       +.+|+++     +.+..||+|+.. .+......|...+.+  +.+++++++|++++.|+.+++|+
T Consensus       519 dg~~l~s~-----~~dg~v~lwd~~~~~~~~~~~h~~~v~~--~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          519 DGQTIASA-----SDDKTVKLWNRNGQLLQTLTGHSSSVWG--VAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             TSSCEEEE-----ETTSEEEEECTTSCEEEEEECCSSCEEE--EEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEE-----ECcCEEEEEeCCCCEEEEEcCCCCCEEE--EEEcCCCCEEEEEeCCCEEEEeC
Confidence             4567766     344689999874 221212222222222  67788999999999999999995

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.1e-40  Score=374.05  Aligned_cols=439  Identities=10%  Similarity=0.102  Sum_probs=303.8

Q ss_pred             CCceEEEEEeCCcEEEEEc-cCeEEEeecCCce-eeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecC----cEEEE
Q 005459           20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHK-VRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS----LYLHI   93 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~-~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~d----g~l~l   93 (696)
                      +....++|||||++||+++ |++|+|||..... .....+.      .+.+.+.+++|+|||++||+++.+    +.+++
T Consensus        60 ~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~------~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~  133 (611)
T 1nr0_A           60 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP------VFSGPVKDISWDSESKRIAAVGEGRERFGHVFL  133 (611)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE------CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred             CceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeec------ccCCceEEEEECCCCCEEEEEECCCCceeEEEE
Confidence            3456689999999999995 7899999984221 2222222      134788999999999999998865    57888


Q ss_pred             EEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eeeCCC-eEEEEecCCcEEEEecCCccccceeec
Q 005459           94 FKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNK-HMLLGLSDGSLYSISWKGEFYGAFELV  170 (696)
Q Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~~~-~llv~t~~g~i~~~~w~~~~~~~~~~~  170 (696)
                      |+..  .....                       +.++...|.+  +.+++. .+++++.|+.+++|+  .......   
T Consensus       134 wd~~--~~~~~-----------------------l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd--~~~~~~~---  183 (611)
T 1nr0_A          134 FDTG--TSNGN-----------------------LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE--GPPFKFK---  183 (611)
T ss_dssp             TTTC--CBCBC-----------------------CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE--TTTBEEE---
T ss_pred             eeCC--CCcce-----------------------ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEE--CCCCeEe---
Confidence            8732  11111                       1223334444  455554 589999999999854  3221110   


Q ss_pred             cCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeec
Q 005459          171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI  250 (696)
Q Consensus       171 ~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~  250 (696)
                                                     ..+.+|...|.+++          |+|||+.+++++.|+++++|+...+
T Consensus       184 -------------------------------~~l~~H~~~V~~v~----------fspdg~~las~s~D~~i~lwd~~~g  222 (611)
T 1nr0_A          184 -------------------------------STFGEHTKFVHSVR----------YNPDGSLFASTGGDGTIVLYNGVDG  222 (611)
T ss_dssp             -------------------------------EEECCCSSCEEEEE----------ECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             -------------------------------eeeccccCceEEEE----------ECCCCCEEEEEECCCcEEEEECCCC
Confidence                                           01224455676655          7899999999999999999997655


Q ss_pred             cee----c------CCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc--------------------
Q 005459          251 DKE----L------GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD--------------------  299 (696)
Q Consensus       251 ~~~----~------~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~--------------------  299 (696)
                      +..    .      +|.+.+. ++|+|++++||+|+.|++|++||+.+ ++.+.++....                    
T Consensus       223 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s  301 (611)
T 1nr0_A          223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT-LKVEKTIPVGTRIEDQQLGIIWTKQALVSIS  301 (611)
T ss_dssp             CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEECCSSGGGCEEEEEECSSCEEEEE
T ss_pred             cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC-CceeeeecCCCCccceeEEEEEcCCEEEEEe
Confidence            432    1      7888888 99999999999999999999999987 55544443110                    


Q ss_pred             ---------------CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCC
Q 005459          300 ---------------WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC  364 (696)
Q Consensus       300 ---------------~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~  364 (696)
                                     .....+|.+.|++++|+|||++|++|+.|++|++||+.++.+...+...+...|.+++|++++  
T Consensus       302 ~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~--  379 (611)
T 1nr0_A          302 ANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG--  379 (611)
T ss_dssp             TTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS--
T ss_pred             CCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCC--
Confidence                           000125999999999999999999999999999999999888777644347789999998764  


Q ss_pred             Cccceecce---eeEEEcCCCceE-----------------------------------------EEEecCCcceE--EE
Q 005459          365 KYEPLMSGT---SMMQWDEYGYRL-----------------------------------------YAIEEGSSERV--LI  398 (696)
Q Consensus       365 ~~~~l~sg~---~~~~W~~~~~~l-----------------------------------------~~~~~~~~~~v--~~  398 (696)
                         .+++++   ++++|+..+..+                                         +... .|...+  ++
T Consensus       380 ---~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va  455 (611)
T 1nr0_A          380 ---DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVA  455 (611)
T ss_dssp             ---CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEE
T ss_pred             ---cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEE
Confidence               345554   788887654211                                         0000 122233  55


Q ss_pred             Eec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-
Q 005459          399 FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-  476 (696)
Q Consensus       399 ~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-  476 (696)
                      |++ ++.+++++.|+++++|++..+...                  .... .+|..+|.+++|||||++||+++.|+.+ 
T Consensus       456 ~spdg~~lasgs~D~~v~lwd~~~~~~~------------------~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~  516 (611)
T 1nr0_A          456 LSNDKQFVAVGGQDSKVHVYKLSGASVS------------------EVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVI  516 (611)
T ss_dssp             ECTTSCEEEEEETTSEEEEEEEETTEEE------------------EEEE-EECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EeCCCCEEEEeCCCCeEEEEEccCCcee------------------eeec-cCCCCceEEEEECCCCCEEEEEcCCCCEE
Confidence            666 889999999999999997643221                  0122 5789999999999999999999999999 


Q ss_pred             EEEccC-CceEecCCccceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCCCCCccc--e--eE-EeecCCccEE
Q 005459          477 LYDIRQ-KKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRYHLDQSS--L--LC-RKSLLAKPIV  548 (696)
Q Consensus       477 ~w~~~s-g~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~~l~~~~--~--~~-~~~~~~~~l~  548 (696)
                      +|++.+ ++.... .....+...|..++|.+  ..|+++     +.+..||+|+.+.-....  .  .| ...+.+  +.
T Consensus       517 ~w~~~~~~~~~~~-~~~~~H~~~V~~v~fspdg~~lasg-----s~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~--v~  588 (611)
T 1nr0_A          517 PYSVANNFELAHT-NSWTFHTAKVACVSWSPDNVRLATG-----SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNS--VI  588 (611)
T ss_dssp             EEEGGGTTEESCC-CCCCCCSSCEEEEEECTTSSEEEEE-----ETTSCEEEEETTCTTSCCEEETTSSTTSCEEE--EE
T ss_pred             EEEcCCCCceeee-eeeeecccceeEEEECCCCCEEEEE-----ECCCcEEEEECCCcccccchhhccCcccCeeE--EE
Confidence            999987 432211 01111233488899974  467766     345789999986211110  1  12 122222  56


Q ss_pred             EEccCCEEEEEEcCceEEEEEE
Q 005459          549 MDVYEDYILVTYRPFDVHIFHV  570 (696)
Q Consensus       549 ~~~~~~~llv~~~d~~~~l~~~  570 (696)
                      +++++. |++++.|+.+++|++
T Consensus       589 fs~d~~-l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          589 WLNETT-IVSAGQDSNIKFWNV  609 (611)
T ss_dssp             EEETTE-EEEEETTSCEEEEEC
T ss_pred             EcCCCE-EEEecCCCCEEEEec
Confidence            667666 888999999999986

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.6e-37  Score=351.83  Aligned_cols=445  Identities=17%  Similarity=0.207  Sum_probs=312.5

Q ss_pred             CceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEec
Q 005459           21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT   99 (696)
Q Consensus        21 ~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~   99 (696)
                      ...-++|||||++||+++ |++|+|||..  +..+..+..      +.+.+.+++|+|||++|++++.|+.+++|+....
T Consensus        59 ~V~~l~fspdg~~las~~~d~~i~vWd~~--~~~~~~~~~------~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~  130 (577)
T 2ymu_A           59 SVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTG------HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ  130 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETT--SCEEEEECC------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCC
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEECC--CCEEEEEEC------CCCCEEEEEECCCCCEEEEEcCCCceeecccccc
Confidence            455589999999999885 6799999974  334444332      3467889999999999999999999999985321


Q ss_pred             CcccccC-------------C----------------CC--------CCCceeeeeeEEEe-------------------
Q 005459          100 EKSIQIG-------------G----------------KQ--------PSGLFFIKISLVLN-------------------  123 (696)
Q Consensus       100 ~~~~~~~-------------~----------------~~--------~~~~~~~~~~l~~~-------------------  123 (696)
                      .......             .                ..        .....+..+.+.+.                   
T Consensus       131 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~  210 (577)
T 2ymu_A          131 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN  210 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             eeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC
Confidence            1000000             0                00        00000011100000                   


Q ss_pred             --eeccccccceeEEE--eeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCC-cccccCCCc
Q 005459          124 --EQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG-LASVDTSGA  198 (696)
Q Consensus       124 --~~~~~~~~~~~v~~--~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~-l~~~~~~~~  198 (696)
                        ....+..+...|.+  +.++++.+++++.++.+++|+.+++....     ...+...+..+.|+++++ +++...++.
T Consensus       211 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~-----~~~~~~~v~~v~~~~d~~~l~~~~~d~~  285 (577)
T 2ymu_A          211 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-----LTGHSSSVNGVAFRPDGQTIASASDDKT  285 (577)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-----ECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEE-----EecCCCCEEEEEEcCCCCEEEEEeCCCE
Confidence              00112233444544  46678899999999999986544332221     223344566677777776 344333322


Q ss_pred             cccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc--eecCCCCeEE-EEEcCCCcEEEEEe
Q 005459          199 FVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--KELGSGDAVC-ASIAPEQQILAVGT  275 (696)
Q Consensus       199 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~v~-v~~sp~~~~la~g~  275 (696)
                      .. .+. .....+..+.-+......++++|||+.+++++.|+++++|+....+  ...+|...+. ++|+|++++||+|+
T Consensus       286 i~-~w~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  363 (577)
T 2ymu_A          286 VK-LWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASAS  363 (577)
T ss_dssp             EE-EEE-TTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EE-EEe-CCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEe
Confidence            11 111 1111222222122223446689999999999999999999965432  2367887777 99999999999999


Q ss_pred             cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceec
Q 005459          276 RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISS  355 (696)
Q Consensus       276 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~  355 (696)
                      .||+|++|+..  ++.+.++..        |.++|++++|+|||++|++|+.|+.|++||.. ++++.++.+| ...|++
T Consensus       364 ~dg~v~~~~~~--~~~~~~~~~--------~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~~~-~~~v~~  431 (577)
T 2ymu_A          364 DDKTVKLWNRN--GQLLQTLTG--------HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH-SSSVWG  431 (577)
T ss_dssp             TTSEEEEEETT--CCEEEEEEC--------CSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEECC-SSCEEE
T ss_pred             CCCEEEEEcCC--CCEEEEecC--------CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEecCC-CCCeEE
Confidence            99999999964  577888888        99999999999999999999999999999964 5677888888 778999


Q ss_pred             ccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEE
Q 005459          356 PIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVV  429 (696)
Q Consensus       356 ~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~  429 (696)
                      ++|+|++    +.+++++   ++.+|+.. ++++....+|...|  ++|++ ++.+++++.|+++++|+. .++      
T Consensus       432 ~~~s~d~----~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~------  499 (577)
T 2ymu_A          432 VAFSPDD----QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ------  499 (577)
T ss_dssp             EEECTTS----SEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSC------
T ss_pred             EEECCCC----CEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCC------
Confidence            9999998    8888876   89999975 56677778899888  45555 889999999999999993 332      


Q ss_pred             ecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee--C
Q 005459          430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--G  506 (696)
Q Consensus       430 ~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~  506 (696)
                                    +...+.+|..+|++++|||||++||+|+.||.+ +||........+..  +  .-.|.+++|.  +
T Consensus       500 --------------~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~--h--~~~v~~~~fs~dg  561 (577)
T 2ymu_A          500 --------------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG--H--SSSVWGVAFSPDG  561 (577)
T ss_dssp             --------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEEC--C--SSCEEEEEECTTS
T ss_pred             --------------EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcC--C--CCCEEEEEEcCCC
Confidence                          245678999999999999999999999999999 99975544333321  1  2347788886  4


Q ss_pred             cEEEEEEeecCCCeEEEEEee
Q 005459          507 KIIVVCNYIDSSNTYELLFYP  527 (696)
Q Consensus       507 ~~lv~~~~~~~~~~~~lr~y~  527 (696)
                      ++|+++     +.+..|++|+
T Consensus       562 ~~l~s~-----~~D~~i~~Wd  577 (577)
T 2ymu_A          562 QTIASA-----SSDKTVKLWN  577 (577)
T ss_dssp             SCEEEE-----ETTSCEEEEC
T ss_pred             CEEEEE-----eCCCEEEEeC
Confidence            577776     3346799995

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.3e-36  Score=346.48  Aligned_cols=460  Identities=9%  Similarity=0.074  Sum_probs=319.4

Q ss_pred             CCceEEEEEeCCcEEEEEccCeEEEeecCCce----eeEEEeecChHHHhhccc-ccEEEEcC--CCcEEEEEecCcEEE
Q 005459           20 SSQQIIYFKVNNGLLLIASPCHIELWSSSQHK----VRLGKYKRDSESVQREGE-NLQAVWSP--DTKLIAVVTSSLYLH   92 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~----~~l~~~~r~~~sl~~~G~-~~~v~wsP--Dg~~lav~t~dg~l~   92 (696)
                      +....++|||||++||+++++.|.||+.. ..    ..+..+..      +.+. +.+++|+|  |+++||+++.||.|+
T Consensus        19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~-~~~~~~~~~~~~~~------h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~   91 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLD-DGDSKVPPVVQFTG------HGSSVVTTVKFSPIKGSQYLCSGDESGKVI   91 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECC-SSCCSSCSEEEECT------TTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred             CceeEEEECCCCCEEEEecCCeEEEEECC-CCCCccccceEEec------CCCceEEEEEECcCCCCCEEEEecCCCEEE
Confidence            45555899999999999999999999996 43    33443321      3466 88999999  999999999999999


Q ss_pred             EEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCCeEEEEecCC--cEEEEecCCcccccee
Q 005459           93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDG--SLYSISWKGEFYGAFE  168 (696)
Q Consensus        93 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~~llv~t~~g--~i~~~~w~~~~~~~~~  168 (696)
                      +|++..+......               .......+..+...|.  ++.++++.+++++.+.  ...++.|+....  . 
T Consensus        92 vw~~~~~~~~~~~---------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~--~-  153 (615)
T 1pgu_A           92 VWGWTFDKESNSV---------------EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS--L-  153 (615)
T ss_dssp             EEEEEEEGGGTEE---------------EEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE--E-
T ss_pred             EEeCCCCcccccc---------------cccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCc--c-
Confidence            9999754210000               0000001122233444  4567788888888762  133344762211  1 


Q ss_pred             eccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCc-EEEEeeccCCceeeee
Q 005459          169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEF  247 (696)
Q Consensus       169 ~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~~~~  247 (696)
                                                       ..+..+...|.++.          ++|+|+ .+++++.|+++++|+.
T Consensus       154 ---------------------------------~~~~~~~~~v~~~~----------~~~~~~~~l~~~~~d~~v~vwd~  190 (615)
T 1pgu_A          154 ---------------------------------GEVSGHSQRINACH----------LKQSRPMRSMTVGDDGSVVFYQG  190 (615)
T ss_dssp             ---------------------------------EECCSCSSCEEEEE----------ECSSSSCEEEEEETTTEEEEEET
T ss_pred             ---------------------------------eeeecCCccEEEEE----------ECCCCCcEEEEEeCCCcEEEEeC
Confidence                                             01123445576655          678887 7888899999999997


Q ss_pred             eeccee---cCCCC---eEE-EEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEE-e---eccCCCCCCCCCCeEEEEE
Q 005459          248 IKIDKE---LGSGD---AVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTV-S---LYDWGYSMDDTGPVSCIAW  315 (696)
Q Consensus       248 ~~~~~~---~~~~~---~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~-~---~~~~~~~~~h~g~V~~l~~  315 (696)
                      ...+..   .+|..   .+. ++|+|+ +++|++|+.||.|++||+.+ ++.+..+ .   .        |.++|.+++|
T Consensus       191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~--------~~~~v~~~~~  261 (615)
T 1pgu_A          191 PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIEDDQEP--------VQGGIFALSW  261 (615)
T ss_dssp             TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCBTTBC--------CCSCEEEEEE
T ss_pred             CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC-CCEeEEecccccc--------cCCceEEEEE
Confidence            765433   56777   666 999999 99999999999999999988 7777776 4   5        9999999999


Q ss_pred             CCCCCeEEEEEcCCcEEEEEccCCeeEEEeeccc---ccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEe
Q 005459          316 TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS---LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE  389 (696)
Q Consensus       316 spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~---~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~  389 (696)
                      + |++.|++++.|+.|++||+.+++++.++..+.   ...+.++.+. ++    ..+++|.   .+.+|+..+++.+...
T Consensus       262 ~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~~g~i~~~d~~~~~~~~~~  335 (615)
T 1pgu_A          262 L-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GN----GRIISLSLDGTLNFYELGHDEVLKTI  335 (615)
T ss_dssp             S-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ET----TEEEEEETTSCEEEEETTEEEEEEEE
T ss_pred             c-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CC----CeEEEEECCCCEEEEECCCCcEEEEE
Confidence            9 99999999999999999999999988887652   2445666664 44    6677666   8999999988888877


Q ss_pred             cCCcceEEEEec-----------------------------------ceeeeeccCCCCceeeeeeecC-----------
Q 005459          390 EGSSERVLIFSF-----------------------------------GKCCLNRGVSGMTYARQVIYGE-----------  423 (696)
Q Consensus       390 ~~~~~~v~~~~~-----------------------------------~~~~~s~~~d~~~~~w~~~~~~-----------  423 (696)
                      .+|...|..+.+                                   ++.+++++.|+.+++|++..+.           
T Consensus       336 ~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s  415 (615)
T 1pgu_A          336 SGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASAN  415 (615)
T ss_dssp             CCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEEC
T ss_pred             eCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEc
Confidence            776666544433                                   5667777788888888776421           


Q ss_pred             -----------Ce-----------------------------EEEEecC-CCCcceeEEe--ecC-eeeecCCCceEEEE
Q 005459          424 -----------DR-----------------------------LLVVQSE-DTDELKILHL--NLP-VSYISQNWPVQHVA  459 (696)
Q Consensus       424 -----------~~-----------------------------~~~~~~~-~~~~~~w~~~--~~~-~~~~~~~~~I~~va  459 (696)
                                 ..                             .++..+. +.....|...  ++. ..+.+|..+|.+++
T Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~  495 (615)
T 1pgu_A          416 NDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYIS  495 (615)
T ss_dssp             SSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEE
T ss_pred             CCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEE
Confidence                       11                             1111222 2222334211  111 45567999999999


Q ss_pred             EcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC------------cEEEEEEeecCCCeEEEEEe
Q 005459          460 ASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG------------KIIVVCNYIDSSNTYELLFY  526 (696)
Q Consensus       460 ~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~------------~~lv~~~~~~~~~~~~lr~y  526 (696)
                      |+|||++||+++.||.+ +||+.+++-..-.  ...+...+..++|.+            ++|+++     +.+..|++|
T Consensus       496 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~-----~~dg~i~iw  568 (615)
T 1pgu_A          496 ISPSETYIAAGDVMGKILLYDLQSREVKTSR--WAFRTSKINAISWKPAEKGANEEEIEEDLVATG-----SLDTNIFIY  568 (615)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEECC--SCCCSSCEEEEEECCCC------CCSCCEEEEE-----ETTSCEEEE
T ss_pred             ECCCCCEEEEcCCCCeEEEeeCCCCcceeEe--ecCCCCceeEEEEcCccccccccccCCCEEEEE-----cCCCcEEEE
Confidence            99999999999999999 9999988643211  110223477888854            456665     334689999


Q ss_pred             eCCCCCc---cceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459          527 PRYHLDQ---SSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL  572 (696)
Q Consensus       527 ~~~~l~~---~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~  572 (696)
                      +.+....   ....|...+.+  +.+++.+. |++++.|+.+++|+++.
T Consensus       569 ~~~~~~~~~~~~~~h~~~v~~--l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          569 SVKRPMKIIKALNAHKDGVNN--LLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             ESSCTTCCEEETTSSTTCEEE--EEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             ECCCCceechhhhcCccceEE--EEEcCCCC-eEEecCCceEEEEeeec
Confidence            9862211   11112222222  67778888 88899999999999863

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.1e-36  Score=373.76  Aligned_cols=498  Identities=12%  Similarity=0.108  Sum_probs=337.4

Q ss_pred             CCceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459           20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI   98 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~   98 (696)
                      +....++|||||++||+++ +++|+||+.. .+..+..+.      .+.+.+.+++|+|||++||+++.||.|++||+.+
T Consensus       616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~-~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          616 DAVYHACFSQDGQRIASCGADKTLQVFKAE-TGEKLLDIK------AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEEC------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEECC-CCCEEEEec------cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            3455589999999999985 6799999996 555555443      2357789999999999999999999999999976


Q ss_pred             cCcccccCCCCC-----------CC-----------ceeeeeeEEEeeeccccccceeEEE--eeeCCCeEEEEecCCcE
Q 005459           99 TEKSIQIGGKQP-----------SG-----------LFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSL  154 (696)
Q Consensus        99 ~~~~~~~~~~~~-----------~~-----------~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~~~~llv~t~~g~i  154 (696)
                      +.......+|..           ..           ..+|++.-. .....+.++...|.+  +.++++.+++++.||.|
T Consensus       689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v  767 (1249)
T 3sfz_A          689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL  767 (1249)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred             CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-chhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence            553222222211           00           112211000 001112344455554  56788899999999999


Q ss_pred             EEEecCCcccc-ceeec--------cCCCCCcccccccccCCCCcccccCCCc----------cccCCcCCCcccEEEEE
Q 005459          155 YSISWKGEFYG-AFELV--------HSSNDSSVAALSHHFPSNGLASVDTSGA----------FVSDHKFPISSAIIWLE  215 (696)
Q Consensus       155 ~~~~w~~~~~~-~~~~~--------~~p~~~~~~~~~~~s~~~~l~~~~~~~~----------~~~~~~~~~~~~i~~~~  215 (696)
                      ++|+....... .....        ........+..+.|+++++.......+.          ........+...+..+.
T Consensus       768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~  847 (1249)
T 3sfz_A          768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD  847 (1249)
T ss_dssp             EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred             EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence            99765432111 11000        0000011233333444433110000000          00000001122222222


Q ss_pred             Ecc--------------------------------CcceEEEEEeCCcEEEEeeccCCceeeeeeecce-----------
Q 005459          216 LCL--------------------------------PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-----------  252 (696)
Q Consensus       216 ~~~--------------------------------~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~-----------  252 (696)
                      +++                                .....+.++|||+.+++++.|+++++|+......           
T Consensus       848 ~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~  927 (1249)
T 3sfz_A          848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEID  927 (1249)
T ss_dssp             ECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEE
T ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceee
Confidence            222                                2234567889999999999999999998643110           


Q ss_pred             -----------------------------ecCCC-CeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC
Q 005459          253 -----------------------------ELGSG-DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY  302 (696)
Q Consensus       253 -----------------------------~~~~~-~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~  302 (696)
                                                   ...+. ...+++|+|+++++|+|+.||.|++|++.+ +.....+.+     
T Consensus       928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~-~~~~~~~~~----- 1001 (1249)
T 3sfz_A          928 VVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN-NRVFSSGVG----- 1001 (1249)
T ss_dssp             EEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT-TSCEEECCC-----
T ss_pred             EEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC-Cceeeeccc-----
Confidence                                         00112 334499999999999999999999999988 677777777     


Q ss_pred             CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEc
Q 005459          303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD  379 (696)
Q Consensus       303 ~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~  379 (696)
                         |.+.|.+++|+|||++|++|+.||.|++||+.++.... +.+| ...+.++.++|++    . +++++   ++.+|+
T Consensus      1002 ---h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~-~~~v~~~~~~~~~----~-l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A         1002 ---HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAH-QETVKDFRLLQDS----R-LLSWSFDGTVKVWN 1071 (1249)
T ss_dssp             ---CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCC-SSCEEEEEECSSS----E-EEEEESSSEEEEEE
T ss_pred             ---CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecC-CCcEEEEEEcCCC----c-EEEEECCCcEEEEE
Confidence               99999999999999999999999999999999987663 3445 6789999999975    4 44444   899999


Q ss_pred             CCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceE
Q 005459          380 EYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ  456 (696)
Q Consensus       380 ~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~  456 (696)
                      ..++++.....+|...|  +++++ ++.+++++.|+++++|++..+..                    ...+.+|..+|.
T Consensus      1072 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~--------------------~~~l~~h~~~v~ 1131 (1249)
T 3sfz_A         1072 VITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP--------------------LHELKGHNGCVR 1131 (1249)
T ss_dssp             TTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC--------------------SBCCCCCSSCEE
T ss_pred             CCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce--------------------eeeeccCCCcEE
Confidence            99999988888898888  66666 88999999999999999876654                    556778999999


Q ss_pred             EEEEcCCCCEEEEEeCCccE-EEEccCCceEe-cCCcc-----ceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEee
Q 005459          457 HVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV-FGDIT-----QEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYP  527 (696)
Q Consensus       457 ~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~-f~~~~-----~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~  527 (696)
                      +++|||||++||+|+.||.+ +||+.+++... +....     ......|.+++|.+  ..++++     +  ..+++|+
T Consensus      1132 ~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~-----~--g~v~vwd 1204 (1249)
T 3sfz_A         1132 CSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA-----G--GYLKWWN 1204 (1249)
T ss_dssp             EEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEE-----S--SSEEEBC
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEEC-----C--CeEEEEE
Confidence            99999999999999999999 99999886321 10000     11222367889974  456554     1  4799998


Q ss_pred             CC--CCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEE
Q 005459          528 RY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHV  570 (696)
Q Consensus       528 ~~--~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~  570 (696)
                      ..  ........+...+.+  +.+++++.++++++.|+.+.+|++
T Consensus      1205 ~~~g~~~~~~~~~~~~i~~--~~~s~dg~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A         1205 VATGDSSQTFYTNGTNLKK--IHVSPDFRTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp             SSSCBCCCCCCCSSCCCCC--CEECSSSCCEEEECTTCCEEEECC
T ss_pred             CCCCceeeeeeccCCcccE--EEECCCCCEEEEecCCcEEEEEee
Confidence            75  222222223333433  788999999999999999999975

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-35  Score=346.99  Aligned_cols=487  Identities=11%  Similarity=0.047  Sum_probs=306.7

Q ss_pred             CCceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459           20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI   98 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~   98 (696)
                      +....++|+|||++||+++ |++|+||+.. ....+..+       .+.+.+.+++|+| |++||+++.|+.|++||+..
T Consensus        18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~-~~~~~~~~-------~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~   88 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQ-QVEVVIKL-------EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS   88 (902)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSEEEEECST-TCEEEEEC-------SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred             CCcEEEEECCCCCEEEEEeCCCEEEEEeCC-CcEEEEEc-------CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence            4566689999999999985 7799999985 43322221       1346789999999 88999999999999999864


Q ss_pred             cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceee-------cc
Q 005459           99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFEL-------VH  171 (696)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~-------~~  171 (696)
                      +..             +..+    .     ........++.++++.+++|+.||.|++|+.+......+..       ..
T Consensus        89 ~~~-------------~~~~----~-----~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~  146 (902)
T 2oaj_A           89 QKV-------------LTTV----F-----VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFF  146 (902)
T ss_dssp             CSE-------------EEEE----E-----CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTC
T ss_pred             CcE-------------EEEE----c-----CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccc
Confidence            331             1110    1     01112233456788999999999999997665433221111       11


Q ss_pred             CCCCCcccccccccCCC--CcccccCCCccccCCcCCCcccEEEEEEc------------------cCcceEEEEEeCCc
Q 005459          172 SSNDSSVAALSHHFPSN--GLASVDTSGAFVSDHKFPISSAIIWLELC------------------LPMRLLFVLYSNGQ  231 (696)
Q Consensus       172 ~p~~~~~~~~~~~s~~~--~l~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------~~~~~~~~~s~dG~  231 (696)
                      ...+...+..+.|+++.  .+++...++ .. .+.......+..+.+.                  ......++|+|||+
T Consensus       147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg-~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~  224 (902)
T 2oaj_A          147 PAARLSPIVSIQWNPRDIGTVLISYEYV-TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL  224 (902)
T ss_dssp             SSSCCCCCCEEEEETTEEEEEEEECSSC-EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS
T ss_pred             cccCCCCeEEEEEccCCCCEEEEEeCCC-cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC
Confidence            12234456667777653  244443332 22 2222223333333222                  01234577899999


Q ss_pred             EEEEeeccCCceeeeeeecceec--------CC-------------CCeEE-EEEc----CCC-cEEEEEecC-----Ce
Q 005459          232 LMSCSVSKKGLKLAEFIKIDKEL--------GS-------------GDAVC-ASIA----PEQ-QILAVGTRR-----GV  279 (696)
Q Consensus       232 ~~~~~~~d~~~~~~~~~~~~~~~--------~~-------------~~~v~-v~~s----p~~-~~la~g~~d-----g~  279 (696)
                      .+++++.|+++++||..+++...        .|             ...+. ++|+    |++ .+|++|+.|     +.
T Consensus       225 ~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~  304 (902)
T 2oaj_A          225 HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS  304 (902)
T ss_dssp             EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred             EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence            99999999999999987654321        12             34566 8895    543 577777665     26


Q ss_pred             EEEEEccC-----------------------------CC------------------------------ceeeEEeecc-
Q 005459          280 VELYDLAE-----------------------------SA------------------------------SLIRTVSLYD-  299 (696)
Q Consensus       280 v~vw~~~~-----------------------------~~------------------------------~~~~~~~~~~-  299 (696)
                      +++|++..                             ..                              ..++.+.... 
T Consensus       305 v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g  384 (902)
T 2oaj_A          305 LTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSG  384 (902)
T ss_dssp             EEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTC
T ss_pred             EEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCC
Confidence            66666310                             00                              0000010000 


Q ss_pred             -------------------------------------------CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459          300 -------------------------------------------WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       300 -------------------------------------------~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~  336 (696)
                                                                 .....+|...|.+++|+|||+.||+|+.|++|++||+
T Consensus       385 ~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~  464 (902)
T 2oaj_A          385 IFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDA  464 (902)
T ss_dssp             CEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEES
T ss_pred             CcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEEC
Confidence                                                       0001134445556677899999999999999999999


Q ss_pred             cCCeeE--EEe----e-----cccccceecccccCCCCCCccceecce---eeEEEcCCCc-------------------
Q 005459          337 SGCRLM--STI----R-----QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY-------------------  383 (696)
Q Consensus       337 ~~~~~~--~~l----~-----~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~-------------------  383 (696)
                      .++.+.  ..+    .     +| ...|++++|+|++    +.+++|+   ++++|+..++                   
T Consensus       465 ~~g~~~~~~~~~~~l~~~~~~~h-~~~V~svafspdg----~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~  539 (902)
T 2oaj_A          465 SHGDIQDNASFEVNLSRTLNKAK-ELAVDKISFAAET----LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFR  539 (902)
T ss_dssp             SCCTTTTTBCEEEEHHHHTTCSS-SCCEEEEEEETTT----TEEEEEETTSCEEEEEEEECCC---------------CC
T ss_pred             CCccccCCceEEeechhhcCCCC-CCceeEEEecCCC----CeEEEEecCcEEEEEEecCccccCccccCCCcccceeee
Confidence            877431  111    1     44 6789999999999    8999988   9999998755                   


Q ss_pred             --------------------------eEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCC
Q 005459          384 --------------------------RLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT  434 (696)
Q Consensus       384 --------------------------~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~  434 (696)
                                                +++..+.+|...|  ++|++ + .+++++.|+++++||+....  + ++.    
T Consensus       540 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~--~-~~~----  611 (902)
T 2oaj_A          540 RFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPA--I-IYM----  611 (902)
T ss_dssp             SCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTE--E-EEE----
T ss_pred             eccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCe--E-EEE----
Confidence                                      3467778899999  45555 7 99999999999999953221  1 111    


Q ss_pred             CcceeEEeecCeeee-cCCCceEEEEEc-----CCC---CEEEEEeCCccE-EEEc---cCCceEe-cCCccce-eeeEE
Q 005459          435 DELKILHLNLPVSYI-SQNWPVQHVAAS-----KDG---MFLAVAGLHGLI-LYDI---RQKKWRV-FGDITQE-QKIQS  499 (696)
Q Consensus       435 ~~~~w~~~~~~~~~~-~~~~~I~~va~s-----~dG---~~la~ag~dG~i-~w~~---~sg~w~~-f~~~~~e-~~~~v  499 (696)
                             .++ ..+. +|...|++++||     |||   ++||+|+.||++ +||+   .+|++.. |....+- .+-.|
T Consensus       612 -------~~~-~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v  683 (902)
T 2oaj_A          612 -------ENI-REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPI  683 (902)
T ss_dssp             -------EEG-GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCC
T ss_pred             -------eeh-hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCce
Confidence                   011 3454 899999999999     886   899999999999 9999   7887642 2221110 00011


Q ss_pred             EeEe------------------ee------CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCc-----c--EE
Q 005459          500 KGLL------------------WL------GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAK-----P--IV  548 (696)
Q Consensus       500 ~~~~------------------w~------~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~-----~--l~  548 (696)
                      ..+.                  +.      +..++++ .     +.++|+|+..+   ...++.. +..+     +  +.
T Consensus       684 ~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~-~-----~~~ir~~~~~~---~k~~~k~-~~~~~~~~~v~~~~  753 (902)
T 2oaj_A          684 HKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT-G-----FDDIRLITLGK---SKSTHKG-FKYPLAATGLSYIS  753 (902)
T ss_dssp             CEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE-C-----SSEEEEECTTC---CCEEEEE-CSSCEEEEEEEEEE
T ss_pred             EEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEE-e-----ccceEEEeCcc---ccceeeE-cccceeeeEEEEEE
Confidence            1221                  21      2334444 2     36899998752   2233332 2211     1  12


Q ss_pred             ------EEccCCEEEEEEcCceEEEEEE
Q 005459          549 ------MDVYEDYILVTYRPFDVHIFHV  570 (696)
Q Consensus       549 ------~~~~~~~llv~~~d~~~~l~~~  570 (696)
                            ++..+..|+..+.|+++++|.+
T Consensus       754 ~~~~~~~~~~~~~l~~~~~~g~i~~~s~  781 (902)
T 2oaj_A          754 TVEKNNDRKNLTVIITLEINGHLRVFTI  781 (902)
T ss_dssp             EECSSSCEEEEEEEEEEETTSEEEEEET
T ss_pred             eccccccccCceEEEEEeCCCcEEEEEC
Confidence                  3455667777999999999976

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.9e-33  Score=301.94  Aligned_cols=225  Identities=15%  Similarity=0.194  Sum_probs=197.2

Q ss_pred             EEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG  301 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~  301 (696)
                      ++++|+.+++++.|+++++||....+..   .+|...+. ++|+|++++|++|+.||+|++||+.+ +..+.++.+    
T Consensus       158 ~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~-~~~~~~~~~----  232 (410)
T 1vyh_C          158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-GYCVKTFTG----  232 (410)
T ss_dssp             ECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-CCEEEEEEC----
T ss_pred             EcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CcEEEEEeC----
Confidence            6778888888899999999987665443   67888887 99999999999999999999999998 788888888    


Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCC----------------C
Q 005459          302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC----------------K  365 (696)
Q Consensus       302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~----------------~  365 (696)
                          |...|.+++|+|||+.|++|+.|++|++||+.++.+..++.+| ...|.+++|+|+...                .
T Consensus       233 ----h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (410)
T 1vyh_C          233 ----HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH-RHVVECISWAPESSYSSISEATGSETKKSGKP  307 (410)
T ss_dssp             ----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred             ----CCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCC-CceEEEEEEcCcccccchhhhccccccccCCC
Confidence                9999999999999999999999999999999999999999888 778999999997420                1


Q ss_pred             ccceecce---eeEEEcCCCceEEEEecCCcceEE--EEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCccee
Q 005459          366 YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI  439 (696)
Q Consensus       366 ~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~--~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w  439 (696)
                      ...+++|+   ++++|+..+++++..+.+|...|.  .|++ ++.+++++.|+++++|++..+..               
T Consensus       308 g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~---------------  372 (410)
T 1vyh_C          308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC---------------  372 (410)
T ss_dssp             CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC---------------
T ss_pred             CCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce---------------
Confidence            25678877   899999999999999999999884  4555 78999999999999999865543               


Q ss_pred             EEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459          440 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       440 ~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~  480 (696)
                           ...+.+|..+|.+++|+|+|++||+|+.||.+ +|+.
T Consensus       373 -----~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          373 -----MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             -----CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             -----EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence                 56778999999999999999999999999999 9985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-32  Score=285.63  Aligned_cols=228  Identities=15%  Similarity=0.166  Sum_probs=190.4

Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW  300 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~  300 (696)
                      .++++|+.+++++.|+++++||..+++..   .+|.+.+. ++|+|++++||+|+.||+|++||+++.......+.+   
T Consensus        62 ~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~---  138 (304)
T 2ynn_A           62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG---  138 (304)
T ss_dssp             EEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC---
T ss_pred             EEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc---
Confidence            36778888888888888888887665443   67888887 999999999999999999999999873355667777   


Q ss_pred             CCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459          301 GYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM  376 (696)
Q Consensus       301 ~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~  376 (696)
                           |.+.|.+++|+| |+..||+|+.|++|++||+........+..++...+..+.++|..  +...+++|+   +++
T Consensus       139 -----h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~s~D~~i~  211 (304)
T 2ynn_A          139 -----HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP--DKPYMITASDDLTIK  211 (304)
T ss_dssp             -----CCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCST--TCCEEEEEETTSEEE
T ss_pred             -----cCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcC--CCCEEEEEcCCCeEE
Confidence                 999999999999 789999999999999999988777667766556778888888743  116788887   899


Q ss_pred             EEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC
Q 005459          377 QWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW  453 (696)
Q Consensus       377 ~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  453 (696)
                      +|+.++++++..+.+|...|  .+|++ ++.+++++.|+++++|++.++..                    ...+..|..
T Consensus       212 iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~--------------------~~~~~~~~~  271 (304)
T 2ynn_A          212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV--------------------EKTLNVGLE  271 (304)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE--------------------EEEECCSSS
T ss_pred             EEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce--------------------eeeccCCCc
Confidence            99999999999999999998  45555 77899999999999999766553                    456677888


Q ss_pred             ceEEEEEcCCCC--EEEEEeCCccEEEEccC
Q 005459          454 PVQHVAASKDGM--FLAVAGLHGLILYDIRQ  482 (696)
Q Consensus       454 ~I~~va~s~dG~--~la~ag~dG~i~w~~~s  482 (696)
                      ++.+++|+|+|+  ++|+|+.||.++|++..
T Consensus       272 ~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~  302 (304)
T 2ynn_A          272 RSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (304)
T ss_dssp             SEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred             cEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence            999999999986  69999999999998765

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.3e-33  Score=297.42  Aligned_cols=318  Identities=13%  Similarity=0.124  Sum_probs=207.4

Q ss_pred             EEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec------CcEEEEEEEEe
Q 005459           25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS------SLYLHIFKVQI   98 (696)
Q Consensus        25 v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~------dg~l~l~~l~~   98 (696)
                      +.+.+++.++.+.++.....|+.. +..+.          .+.+.+.+++|||||++||+++.      ||.+++|+...
T Consensus        11 ~d~g~~~~~~~~~g~~~~~~w~~p-~~~p~----------~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~   79 (357)
T 4g56_B           11 VDLGTENLYFQSNGSSKGSAWGRP-VTAPA----------CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPE   79 (357)
T ss_dssp             ----------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC
T ss_pred             CCCCccceEEecCCCccccccCCC-CCCcc----------cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCC
Confidence            556777778777778889999983 32221          24567899999999999999998      67788887654


Q ss_pred             cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--eeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCC
Q 005459           99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS  176 (696)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~  176 (696)
                      +......        .           .....+...|.++  .++ +.+++++.+|.|++  |+........        
T Consensus        80 ~~~~~~~--------~-----------~~~~~~~~~V~~~~~s~d-~~~l~~s~dg~v~l--Wd~~~~~~~~--------  129 (357)
T 4g56_B           80 GAPNESL--------C-----------TAGVQTEAGVTDVAWVSE-KGILVASDSGAVEL--WEILEKESLL--------  129 (357)
T ss_dssp             ---CGGG--------C-----------SEEEECSSCEEEEEEETT-TEEEEEETTSCEEE--C--------C--------
T ss_pred             CCcceeE--------e-----------cccCCCCCCEEEEEEcCC-CCEEEEECCCEEEE--eeccccceeE--------
Confidence            4321110        0           0011223345554  444 56888999999988  5533221110        


Q ss_pred             cccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---
Q 005459          177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---  253 (696)
Q Consensus       177 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---  253 (696)
                        .                    .......+...|.+++          ++|||+.+++++.|+++++||..+++..   
T Consensus       130 --~--------------------~~~~~~~h~~~V~~v~----------~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~  177 (357)
T 4g56_B          130 --V--------------------NKFAKYEHDDIVKTLS----------VFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY  177 (357)
T ss_dssp             --C--------------------CCEEECCCSSCEEEEE----------ECSSSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             --E--------------------EeeccCCCCCCEEEEE----------ECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence              0                    0011224455677655          7899999999999999999998876543   


Q ss_pred             cCCCCeEE-EEEcCCCc-EEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEcCCc
Q 005459          254 LGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRG  330 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~Dg~  330 (696)
                      .+|...+. ++|+|+++ ++++++.||+|++||+++ ++....+...      .|...|.+++|+|+ +++||+|+.|+.
T Consensus       178 ~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~~~~~~------~~~~~v~~v~~sp~~~~~la~g~~d~~  250 (357)
T 4g56_B          178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPATRIDFC------ASDTIPTSVTWHPEKDDTFACGDETGN  250 (357)
T ss_dssp             CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBCBCCCT------TCCSCEEEEEECTTSTTEEEEEESSSC
T ss_pred             cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC-Cceeeeeeec------cccccccchhhhhcccceEEEeecccc
Confidence            67888887 99999875 899999999999999987 5554433321      27788999999997 568999999999


Q ss_pred             EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccC
Q 005459          331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGV  410 (696)
Q Consensus       331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~  410 (696)
                      |++||+.+++++.++.+| ...|++++|+|++    .                                   +.+++++.
T Consensus       251 i~~wd~~~~~~~~~~~~~-~~~v~~l~~sp~~----~-----------------------------------~~lasgs~  290 (357)
T 4g56_B          251 VSLVNIKNPDSAQTSAVH-SQNITGLAYSYHS----S-----------------------------------PFLASISE  290 (357)
T ss_dssp             EEEEESSCGGGCEEECCC-SSCEEEEEECSSS----S-----------------------------------CCEEEEET
T ss_pred             eeEEECCCCcEeEEEecc-ceeEEEEEEcCCC----C-----------------------------------CEEEEEeC
Confidence            999999999888888887 6668888887775    2                                   23466777


Q ss_pred             CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcC-CCCEEEEEeCCccE-EEEccCC
Q 005459          411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQK  483 (696)
Q Consensus       411 d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~-dG~~la~ag~dG~i-~w~~~sg  483 (696)
                      |+++++||+..++.                     ....+|..+|++++||| ||++||+||.||.+ +|++.+.
T Consensus       291 D~~i~iwd~~~~~~---------------------~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          291 DCTVAVLDADFSEV---------------------FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             TSCEEEECTTSCEE---------------------EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             CCEEEEEECCCCcE---------------------eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            88888888654322                     23457899999999998 89999999999999 9998653

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.9e-32  Score=285.13  Aligned_cols=281  Identities=15%  Similarity=0.153  Sum_probs=211.2

Q ss_pred             hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeE
Q 005459           66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM  145 (696)
Q Consensus        66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~l  145 (696)
                      +.+.+.+++|+|||++||+++.||.|++||+..+........                     ........++.++++.+
T Consensus        54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~---------------------~~~~v~~~~~s~~~~~l  112 (340)
T 1got_B           54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL---------------------RSSWVMTCAYAPSGNYV  112 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC---------------------SSSCEEEEEECTTSSEE
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec---------------------CCccEEEEEECCCCCEE
Confidence            347889999999999999999999999999764332111100                     11112233567788999


Q ss_pred             EEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEE
Q 005459          146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV  225 (696)
Q Consensus       146 lv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  225 (696)
                      ++++.|+.+++|+.........                                ....+..+...|.++          .
T Consensus       113 ~s~~~d~~v~iw~~~~~~~~~~--------------------------------~~~~~~~h~~~v~~~----------~  150 (340)
T 1got_B          113 ACGGLDNICSIYNLKTREGNVR--------------------------------VSRELAGHTGYLSCC----------R  150 (340)
T ss_dssp             EEEETTCEEEEEETTTCSBSCE--------------------------------EEEEEECCSSCEEEE----------E
T ss_pred             EEEeCCCeEEEEECccCCCcce--------------------------------eEEEecCCCccEEEE----------E
Confidence            9999999999876543211100                                000112233445443          4


Q ss_pred             EEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG  301 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~  301 (696)
                      ++++++ +++++.|+++++||..+++..   .+|...+. ++|+|++++|++|+.||+|++||+.+ +....++.+    
T Consensus       151 ~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-~~~~~~~~~----  224 (340)
T 1got_B          151 FLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTG----  224 (340)
T ss_dssp             EEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CSEEEEECC----
T ss_pred             ECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcC----
Confidence            667776 778889999999998766543   67888887 99999999999999999999999988 778888888    


Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeeccc-ccceecccccCCCCCCccceecceeeEEEcC
Q 005459          302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQDCKYEPLMSGTSMMQWDE  380 (696)
Q Consensus       302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~-~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~  380 (696)
                          |.+.|.+++|+|||++|++|+.||+|++||+..++.+.++.... ...|.+++|+|++                  
T Consensus       225 ----h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g------------------  282 (340)
T 1got_B          225 ----HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG------------------  282 (340)
T ss_dssp             ----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS------------------
T ss_pred             ----CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCC------------------
Confidence                99999999999999999999999999999999887766654321 1234555555544                  


Q ss_pred             CCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEE
Q 005459          381 YGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA  460 (696)
Q Consensus       381 ~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~  460 (696)
                                            +.+++++.|+.+++|++..+..                    ...+.+|..+|.+++|
T Consensus       283 ----------------------~~l~~g~~d~~i~vwd~~~~~~--------------------~~~~~~h~~~v~~~~~  320 (340)
T 1got_B          283 ----------------------RLLLAGYDDFNCNVWDALKADR--------------------AGVLAGHDNRVSCLGV  320 (340)
T ss_dssp             ----------------------SEEEEEETTSEEEEEETTTCCE--------------------EEEEECCSSCEEEEEE
T ss_pred             ----------------------CEEEEECCCCeEEEEEcccCcE--------------------eeEeecCCCcEEEEEE
Confidence                                  3456677788888888655443                    3466789999999999


Q ss_pred             cCCCCEEEEEeCCccE-EEE
Q 005459          461 SKDGMFLAVAGLHGLI-LYD  479 (696)
Q Consensus       461 s~dG~~la~ag~dG~i-~w~  479 (696)
                      +|||++||+||.||.+ +||
T Consensus       321 s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          321 TDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTSSCEEEEETTSCEEEEC
T ss_pred             cCCCCEEEEEcCCccEEecC
Confidence            9999999999999999 996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=291.25  Aligned_cols=226  Identities=14%  Similarity=0.104  Sum_probs=187.3

Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeeccee-------cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEe
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS  296 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~  296 (696)
                      +|++|++ +++++.|+++++||..+++..       .+|.+.|. ++|+|++++||+|+.||+|++||+.+ ++.++++.
T Consensus        89 ~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~-~~~~~~~~  166 (344)
T 4gqb_B           89 TWVGERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-QVVLSSYR  166 (344)
T ss_dssp             EEETTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEEC
T ss_pred             EEeCCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-CcEEEEEc
Confidence            3677764 668889999999998766432       47998887 99999999999999999999999998 88888898


Q ss_pred             eccCCCCCCCCCCeEEEEECCCCC-eEEEEEcCCcEEEEEccCCeeEEEeecc-cccceecccccCCCCCCccceecce-
Q 005459          297 LYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT-  373 (696)
Q Consensus       297 ~~~~~~~~~h~g~V~~l~~spdg~-~lasg~~Dg~v~vW~~~~~~~~~~l~~~-~~~~v~~~~~sp~~~~~~~~l~sg~-  373 (696)
                      +        |++.|.+++|+|++. .|++|+.|++|++||+.+++...++..+ +...+.+++|+|++.   +.+++|+ 
T Consensus       167 ~--------h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~l~sg~~  235 (344)
T 4gqb_B          167 A--------HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQS---EVFVFGDE  235 (344)
T ss_dssp             C--------CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCT---TEEEEEET
T ss_pred             C--------cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCC---cceEEecc
Confidence            8        999999999999985 7899999999999999999888887642 245688999999651   5677776 


Q ss_pred             --eeEEEcCCCceEEEEecCCcceEEE--Eec-c-eeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCee
Q 005459          374 --SMMQWDEYGYRLYAIEEGSSERVLI--FSF-G-KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS  447 (696)
Q Consensus       374 --~~~~W~~~~~~l~~~~~~~~~~v~~--~~~-~-~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  447 (696)
                        ++++||.++++++..+.+|...|..  |++ + +.+++++.|+++++||+..++                     ...
T Consensus       236 dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~---------------------~~~  294 (344)
T 4gqb_B          236 NGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE---------------------LFR  294 (344)
T ss_dssp             TSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE---------------------EEE
T ss_pred             CCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc---------------------EEE
Confidence              8999999999999999999999944  555 4 568999999999999976543                     234


Q ss_pred             eecCCCceEEEEEcCCCC-EEEEEeCCccE-EEEccCCc
Q 005459          448 YISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       448 ~~~~~~~I~~va~s~dG~-~la~ag~dG~i-~w~~~sg~  484 (696)
                      +.+|..+|++++|+|+|+ +||++|.||.+ +|++.++.
T Consensus       295 ~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          295 SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            678999999999999997 57899999999 99998753

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.1e-32  Score=285.45  Aligned_cols=274  Identities=15%  Similarity=0.162  Sum_probs=228.4

Q ss_pred             cccceeEEEeee------CCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccC
Q 005459          129 AEKGLSVSNIVS------DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSD  202 (696)
Q Consensus       129 ~~~~~~v~~~~~------~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~  202 (696)
                      .++...|.+++.      +++.+++|+.|+.|++|+++.......                                  .
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~----------------------------------~   74 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ----------------------------------W   74 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE----------------------------------E
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee----------------------------------e
Confidence            456667777653      346799999999999987754321100                                  0


Q ss_pred             CcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCC
Q 005459          203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRG  278 (696)
Q Consensus       203 ~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg  278 (696)
                      .+.++...|.++.          +++++..+++++.|+++++||...++..   ..|...+. ++|+|++++||+|+.||
T Consensus        75 ~l~gh~~~v~~~~----------~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg  144 (321)
T 3ow8_A           75 SLEGHQLGVVSVD----------ISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVG  144 (321)
T ss_dssp             EECCCSSCEEEEE----------ECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTS
T ss_pred             eeccCCCCEEEEE----------ECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence            1224455676655          6789999999999999999998766543   45555555 99999999999999999


Q ss_pred             eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccc
Q 005459          279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV  358 (696)
Q Consensus       279 ~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~  358 (696)
                      +|++|++++ ++....+..        |...|.+++|+|||++||+|+.|+.|++||+.+++++.++.+| ...|.+++|
T Consensus       145 ~v~i~~~~~-~~~~~~~~~--------~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~  214 (321)
T 3ow8_A          145 KVNIFGVES-GKKEYSLDT--------RGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH-AMPIRSLTF  214 (321)
T ss_dssp             EEEEEETTT-CSEEEEEEC--------SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCCCEEEE
T ss_pred             cEEEEEcCC-CceeEEecC--------CCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccc-CCceeEEEE
Confidence            999999988 677777777        8889999999999999999999999999999999999999988 778999999


Q ss_pred             cCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEE--Eec-ceeeeeccCCCCceeeeeeecCCeEEEEecC
Q 005459          359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE  432 (696)
Q Consensus       359 sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~  432 (696)
                      +|++    +.+++|+   ++++|+..++++...+.+|...|..  |++ ++.+++++.|+++++|++.++..        
T Consensus       215 spd~----~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~--------  282 (321)
T 3ow8_A          215 SPDS----QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC--------  282 (321)
T ss_dssp             CTTS----CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--------
T ss_pred             cCCC----CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE--------
Confidence            9998    8888887   8999999999999999999999854  555 78999999999999999865543        


Q ss_pred             CCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459          433 DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       433 ~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~  480 (696)
                                  ...+.+|..+|.+++|+|||++|+++|.||.+ +||.
T Consensus       283 ------------~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          283 ------------VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             ------------EEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             ------------EEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence                        55778899999999999999999999999999 9996

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.2e-31  Score=316.49  Aligned_cols=408  Identities=13%  Similarity=0.123  Sum_probs=277.2

Q ss_pred             CCceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459           20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI   98 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~   98 (696)
                      +...-++|||||++||+++ +++|.||+.. .+..+..+..      +.+.+.+++|+|||++||+++.||.|++|++..
T Consensus        14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~-~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~   86 (814)
T 3mkq_A           14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYE-TQVEVRSIQV------TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT   86 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETT-TTEEEEEEEC------CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred             CceEEEEECCCCCEEEEEeCCCEEEEEECC-CCceEEEEec------CCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence            3566689999999999885 6799999986 5555554432      347789999999999999999999999999864


Q ss_pred             cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCC
Q 005459           99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS  176 (696)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~  176 (696)
                      +......                       ..+...|.  ++.+++..+++++.||.|++|+++.......         
T Consensus        87 ~~~~~~~-----------------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~---------  134 (814)
T 3mkq_A           87 GEKVVDF-----------------------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ---------  134 (814)
T ss_dssp             CCEEEEE-----------------------ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE---------
T ss_pred             CcEEEEE-----------------------ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE---------
Confidence            4321111                       12223343  4567788999999999999987753311100         


Q ss_pred             cccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEe-CCcEEEEeeccCCceeeeeeeccee--
Q 005459          177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKIDKE--  253 (696)
Q Consensus       177 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~-dG~~~~~~~~d~~~~~~~~~~~~~~--  253 (696)
                                                ....+...|.++.          ++| +|+.+++++.|+++++|+...++..  
T Consensus       135 --------------------------~~~~~~~~v~~~~----------~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~  178 (814)
T 3mkq_A          135 --------------------------TFEGHEHFVMCVA----------FNPKDPSTFASGCLDRTVKVWSLGQSTPNFT  178 (814)
T ss_dssp             --------------------------EEECCSSCEEEEE----------EETTEEEEEEEEETTSEEEEEETTCSSCSEE
T ss_pred             --------------------------EEcCCCCcEEEEE----------EEcCCCCEEEEEeCCCeEEEEECCCCcceeE
Confidence                                      1112344566655          677 8889999999999999997654332  


Q ss_pred             --cCCCCeE-EEEEcC--CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459          254 --LGSGDAV-CASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS  328 (696)
Q Consensus       254 --~~~~~~v-~v~~sp--~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D  328 (696)
                        ..+...+ +++|+|  ++++|++|+.||+|++||+.+ ++.+.++.+        |.+.|.+++|+|||..|++|+.|
T Consensus       179 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d  249 (814)
T 3mkq_A          179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-KSCVATLEG--------HMSNVSFAVFHPTLPIIISGSED  249 (814)
T ss_dssp             EECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT-TEEEEEEEC--------CSSCEEEEEECSSSSEEEEEETT
T ss_pred             EecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC-CcEEEEEcC--------CCCCEEEEEEcCCCCEEEEEeCC
Confidence              2343444 499999  999999999999999999988 778888888        99999999999999999999999


Q ss_pred             CcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEecC---------------
Q 005459          329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEG---------------  391 (696)
Q Consensus       329 g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~---------------  391 (696)
                      |.|++||+.+++...++..+ ...+.+++|+|++.  ...+++|.  .+..|+............               
T Consensus       250 g~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  326 (814)
T 3mkq_A          250 GTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGR--KNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAAS  326 (814)
T ss_dssp             SCEEEEETTTCSEEEEECCS-SSSEEEEEECTTCG--GGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTT
T ss_pred             CeEEEEECCCCcEEEEeecC-CCcEEEEEEccCCC--ceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccce
Confidence            99999999999999999887 67899999999971  01355554  666666543221111100               


Q ss_pred             ----------------------------CcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeE
Q 005459          392 ----------------------------SSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL  440 (696)
Q Consensus       392 ----------------------------~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~  440 (696)
                                                  +...+  +++++ ++.+++++ ++.+.+|++.                    
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~--------------------  385 (814)
T 3mkq_A          327 DIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTAL--------------------  385 (814)
T ss_dssp             CEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETT--------------------
T ss_pred             eeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECc--------------------
Confidence                                        00111  33333 33333333 4444444421                    


Q ss_pred             EeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCc-----EEEEEEe
Q 005459          441 HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK-----IIVVCNY  514 (696)
Q Consensus       441 ~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~-----~lv~~~~  514 (696)
                           .....+..+|.+++|||||+++|+++.+|.+ +|+...+           +...+..+.|.++     .++++  
T Consensus       386 -----~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~-----------~~~~v~~~~~s~dg~~~~~l~~~--  447 (814)
T 3mkq_A          386 -----AWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKE-----------VTSWSVPMHSAIDRLFSGALLGV--  447 (814)
T ss_dssp             -----TTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEETTEE-----------CTTCCCCCSSCCCEEECSSSEEE--
T ss_pred             -----cccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCC-----------ccceEEcCCcCccceecceEEEE--
Confidence                 1112234467788888888888888888888 8853221           1111334555544     44444  


Q ss_pred             ecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEEEE
Q 005459          515 IDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVT  559 (696)
Q Consensus       515 ~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~  559 (696)
                         +.+..|++|+.+   ....+.........+.++++++++++.
T Consensus       448 ---~~d~~v~~~d~~---~~~~~~~~~~~~~~v~~s~dg~~la~~  486 (814)
T 3mkq_A          448 ---KSDGFVYFFDWD---NGTLVRRIDVNAKDVIWSDNGELVMIV  486 (814)
T ss_dssp             ---EETTEEEEECTT---TCCEEEEESSCEEEEEECTTSSEEEEE
T ss_pred             ---ecCCEEEEEECC---cCcEEEEEecCCCEEEEcCCCCEEEEE
Confidence               233689999765   222333333333468889999999997

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-31  Score=283.42  Aligned_cols=303  Identities=13%  Similarity=0.091  Sum_probs=212.8

Q ss_pred             ccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eeeCCCeE
Q 005459           68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHM  145 (696)
Q Consensus        68 G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~~~~l  145 (696)
                      +.+..++|+|||++||+++.||.|+||++..+....                    ......++...|.+  ++++++.|
T Consensus        17 ~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~--------------------~~~~~~~h~~~v~~~~~sp~g~~l   76 (345)
T 3fm0_A           17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC--------------------KSVLSEGHQRTVRKVAWSPCGNYL   76 (345)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE--------------------EEEECSSCSSCEEEEEECTTSSEE
T ss_pred             CcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee--------------------eeeeccccCCcEEEEEECCCCCEE
Confidence            378899999999999999999999999997442100                    00011234444544  46788999


Q ss_pred             EEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEE
Q 005459          146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV  225 (696)
Q Consensus       146 lv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  225 (696)
                      ++++.|+.+++|+.+.......                                  ..+..+...|.+++          
T Consensus        77 ~s~s~D~~v~iw~~~~~~~~~~----------------------------------~~~~~h~~~v~~v~----------  112 (345)
T 3fm0_A           77 ASASFDATTCIWKKNQDDFECV----------------------------------TTLEGHENEVKSVA----------  112 (345)
T ss_dssp             EEEETTSCEEEEEECCC-EEEE----------------------------------EEECCCSSCEEEEE----------
T ss_pred             EEEECCCcEEEEEccCCCeEEE----------------------------------EEccCCCCCceEEE----------
Confidence            9999999999865442211100                                  01223455676655          


Q ss_pred             EEeCCcEEEEeeccCCceeeeeeecc------eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCc--eeeEEe
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKID------KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESAS--LIRTVS  296 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~--~~~~~~  296 (696)
                      ++|||+.+++++.|+++++|+.....      .+.+|...+. ++|+|++++||+|+.||+|++|+... ..  ...++.
T Consensus       113 ~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~-~~~~~~~~~~  191 (345)
T 3fm0_A          113 WAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE-DDWVCCATLE  191 (345)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET-TEEEEEEEEC
T ss_pred             EeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC-CCEEEEEEec
Confidence            78899999999999999999986542      2367888887 99999999999999999999999986 43  345666


Q ss_pred             eccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeE
Q 005459          297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMM  376 (696)
Q Consensus       297 ~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~  376 (696)
                      +        |.+.|.+++|+|||++||+|+.|++|++|+.....       . ...+.+.                ....
T Consensus       192 ~--------h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~-------~-~~~~~~~----------------~~~~  239 (345)
T 3fm0_A          192 G--------HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPG-------N-EQGVACS----------------GSDP  239 (345)
T ss_dssp             C--------CSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTT-------C-TTCCCCC-------------------C
T ss_pred             C--------CCCceEEEEECCCCCEEEEEeCCCeEEEeccccCC-------C-Cccceee----------------ccCC
Confidence            6        99999999999999999999999999999964321       0 0000000                0000


Q ss_pred             EEcCCCceEEEEecC-CcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecC-eeeecC
Q 005459          377 QWDEYGYRLYAIEEG-SSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQ  451 (696)
Q Consensus       377 ~W~~~~~~l~~~~~~-~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~  451 (696)
                           ..+++....+ |...|..+.+   +..+++++.|+++++|+........       .+.     ..+. ..+.+|
T Consensus       240 -----~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~-------~~~-----~~~~~~~~~~h  302 (345)
T 3fm0_A          240 -----SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQ-------QPT-----FSLTAHLHQAH  302 (345)
T ss_dssp             -----EEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTT-------SCC-----EEEEEEETTSS
T ss_pred             -----ccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcc-------eee-----EEEEeeecccc
Confidence                 1123333333 6667754444   7788999999999999976543200       000     0001 123479


Q ss_pred             CCceEEEEEcCCC-CEEEEEeCCccE-EEEccCCc
Q 005459          452 NWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       452 ~~~I~~va~s~dG-~~la~ag~dG~i-~w~~~sg~  484 (696)
                      ..+|.+++|+|++ .+||+||.||.+ +|++.+++
T Consensus       303 ~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          303 SQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             SSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred             cCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence            9999999999998 599999999999 99998875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.2e-31  Score=329.04  Aligned_cols=421  Identities=15%  Similarity=0.132  Sum_probs=306.1

Q ss_pred             hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCC
Q 005459           66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNK  143 (696)
Q Consensus        66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~  143 (696)
                      +.+.+.+++|+|||++||+++.||.|++|++.++.....                       +.++...|.  +++++++
T Consensus       614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~-----------------------~~~h~~~v~~~~~s~~~~  670 (1249)
T 3sfz_A          614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD-----------------------IKAHEDEVLCCAFSSDDS  670 (1249)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-----------------------ECCCSSCEEEEEECTTSS
T ss_pred             ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE-----------------------eccCCCCEEEEEEecCCC
Confidence            346788999999999999999999999999865432111                       122333444  4567888


Q ss_pred             eEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceE
Q 005459          144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL  223 (696)
Q Consensus       144 ~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  223 (696)
                      .+++++.||.|++|++...  ....                                  .+..+...|.++.        
T Consensus       671 ~l~s~~~d~~v~vwd~~~~--~~~~----------------------------------~~~~~~~~v~~~~--------  706 (1249)
T 3sfz_A          671 YIATCSADKKVKIWDSATG--KLVH----------------------------------TYDEHSEQVNCCH--------  706 (1249)
T ss_dssp             EEEEEETTSEEEEEETTTC--CEEE----------------------------------EEECCSSCEEEEE--------
T ss_pred             EEEEEeCCCeEEEEECCCC--ceEE----------------------------------EEcCCCCcEEEEE--------
Confidence            9999999999998665422  1110                                  1113344566665        


Q ss_pred             EEEEe--CCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459          224 FVLYS--NGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL  297 (696)
Q Consensus       224 ~~~s~--dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~  297 (696)
                        +++  ++.++++++.|+++++||...++..   .+|.+.+. ++|+|++++|++|+.||+|++||+.+ +.....+..
T Consensus       707 --~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~  783 (1249)
T 3sfz_A          707 --FTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS-ANERKSINV  783 (1249)
T ss_dssp             --ECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGG-TEEEEEEEC
T ss_pred             --EecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCC-Ccccceecc
Confidence              455  5568888999999999998776543   67888887 99999999999999999999999987 665555543


Q ss_pred             ccCC-----CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecc
Q 005459          298 YDWG-----YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG  372 (696)
Q Consensus       298 ~~~~-----~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg  372 (696)
                      ....     ....+...|.+++|+|||+.+++++ ++.+.+|++.++.....+...+...+.+++|+|++    ..+++|
T Consensus       784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~----~~l~~~  858 (1249)
T 3sfz_A          784 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD----HLAVIA  858 (1249)
T ss_dssp             CCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST----TEEEEE
T ss_pred             cccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC----CEEEEE
Confidence            2211     1112455799999999999999988 58999999999988888875447889999999998    778777


Q ss_pred             e---eeEEEcCCCceEEEEecCCcceEEEE--ec-ceeeeeccCCCCceeeeeeecC-----------------------
Q 005459          373 T---SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GKCCLNRGVSGMTYARQVIYGE-----------------------  423 (696)
Q Consensus       373 ~---~~~~W~~~~~~l~~~~~~~~~~v~~~--~~-~~~~~s~~~d~~~~~w~~~~~~-----------------------  423 (696)
                      .   .+.+|+..+++......+|...|..+  ++ ++.+++++.|+++++|++....                       
T Consensus       859 ~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  938 (1249)
T 3sfz_A          859 LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL  938 (1249)
T ss_dssp             CSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEE
T ss_pred             eCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEE
Confidence            6   89999999999999999999999554  44 7889999999999999864210                       


Q ss_pred             ----------------------------------CeEEEEecCCCCcceeEE--eecCeeeecCCCceEEEEEcCCCCEE
Q 005459          424 ----------------------------------DRLLVVQSEDTDELKILH--LNLPVSYISQNWPVQHVAASKDGMFL  467 (696)
Q Consensus       424 ----------------------------------~~~~~~~~~~~~~~~w~~--~~~~~~~~~~~~~I~~va~s~dG~~l  467 (696)
                                                        .+.++..+.+.....|..  .+....+.+|..+|++++|+|||+++
T Consensus       939 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1018 (1249)
T 3sfz_A          939 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL 1018 (1249)
T ss_dssp             EEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCE
T ss_pred             EecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEE
Confidence                                              001111111111122321  12233556899999999999999999


Q ss_pred             EEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC--CCCccceeEEeecCC
Q 005459          468 AVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLA  544 (696)
Q Consensus       468 a~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~--~l~~~~~~~~~~~~~  544 (696)
                      ++++.||.+ +||+.+++...+.    ...-.+..+.|.++..++++    +.+..+++|+..  .+......|...+.+
T Consensus      1019 ~s~~~dg~i~vwd~~~~~~~~~~----~~~~~v~~~~~~~~~~l~~~----~~dg~v~vwd~~~~~~~~~~~~~~~~v~~ 1090 (1249)
T 3sfz_A         1019 ISSSEDSVIQVWNWQTGDYVFLQ----AHQETVKDFRLLQDSRLLSW----SFDGTVKVWNVITGRIERDFTCHQGTVLS 1090 (1249)
T ss_dssp             EEECSSSBEEEEETTTTEEECCB----CCSSCEEEEEECSSSEEEEE----ESSSEEEEEETTTTCCCEEEECCSSCCCC
T ss_pred             EEEcCCCEEEEEECCCCceEEEe----cCCCcEEEEEEcCCCcEEEE----ECCCcEEEEECCCCceeEEEcccCCcEEE
Confidence            999999999 9999998765432    22234777888755443332    234689999986  222222223333433


Q ss_pred             ccEEEEccCCEEEEEEcCceEEEEEEE
Q 005459          545 KPIVMDVYEDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       545 ~~l~~~~~~~~llv~~~d~~~~l~~~~  571 (696)
                        +.+++++..+++++.|+.+++|++.
T Consensus      1091 --~~~s~d~~~l~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A         1091 --CAISSDATKFSSTSADKTAKIWSFD 1115 (1249)
T ss_dssp             --EEECSSSSSCEEECCSSCCCEECSS
T ss_pred             --EEECCCCCEEEEEcCCCcEEEEECC
Confidence              7888999999999999999999875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.5e-31  Score=282.57  Aligned_cols=284  Identities=12%  Similarity=0.095  Sum_probs=212.2

Q ss_pred             hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeE
Q 005459           66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM  145 (696)
Q Consensus        66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~l  145 (696)
                      +.+.+.+++|+||+++||+++.||+|++||..........                 .    .........++++++..+
T Consensus        63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~-----------------~----~~~~~v~~~~~sp~g~~l  121 (354)
T 2pbi_B           63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAV-----------------T----MPCTWVMACAYAPSGCAI  121 (354)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-----------------E----CSSSCCCEEEECTTSSEE
T ss_pred             CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEE-----------------e----cCCCCEEEEEECCCCCEE
Confidence            3467899999999999999999999999997543321111                 0    011122344678889999


Q ss_pred             EEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEE
Q 005459          146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV  225 (696)
Q Consensus       146 lv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  225 (696)
                      ++++.|+.+.+|.+.........                              .....+..+...|..          +.
T Consensus       122 asg~~d~~i~v~~~~~~~~~~~~------------------------------~~~~~~~~h~~~v~~----------~~  161 (354)
T 2pbi_B          122 ACGGLDNKCSVYPLTFDKNENMA------------------------------AKKKSVAMHTNYLSA----------CS  161 (354)
T ss_dssp             EEESTTSEEEEEECCCCTTCCSG------------------------------GGCEEEEECSSCEEE----------EE
T ss_pred             EEeeCCCCEEEEEEecccccccc------------------------------ccceeeeccCCcEEE----------EE
Confidence            99999999998765432111000                              000011123334444          55


Q ss_pred             EEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcC--CCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp--~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      ++++++.+++++.|+++++||...++..   .+|...+. ++|+|  ++++|++|+.||+|++||+++ ++.+..+..  
T Consensus       162 ~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-~~~~~~~~~--  238 (354)
T 2pbi_B          162 FTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-GQCVQAFET--  238 (354)
T ss_dssp             ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-CCEEEEECC--
T ss_pred             EeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-CcEEEEecC--
Confidence            7899999999999999999998776543   67887776 88887  578999999999999999998 788888888  


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeeccc-ccceecccccCCCCCCccceecceeeEEE
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQDCKYEPLMSGTSMMQW  378 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~-~~~v~~~~~sp~~~~~~~~l~sg~~~~~W  378 (696)
                            |.+.|++++|+|+|+.||+|+.|++|++||+...+.+..+..+. ...+++++|+|+                 
T Consensus       239 ------h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~-----------------  295 (354)
T 2pbi_B          239 ------HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS-----------------  295 (354)
T ss_dssp             ------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT-----------------
T ss_pred             ------CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCC-----------------
Confidence                  99999999999999999999999999999998877665554321 112333333333                 


Q ss_pred             cCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEE
Q 005459          379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV  458 (696)
Q Consensus       379 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v  458 (696)
                                             ++.+++++.|+++++|++..+..                    ...+.+|..+|.++
T Consensus       296 -----------------------g~~l~~g~~d~~i~vwd~~~~~~--------------------~~~l~~h~~~v~~l  332 (354)
T 2pbi_B          296 -----------------------GRLLFAGYNDYTINVWDVLKGSR--------------------VSILFGHENRVSTL  332 (354)
T ss_dssp             -----------------------SSEEEEEETTSCEEEEETTTCSE--------------------EEEECCCSSCEEEE
T ss_pred             -----------------------CCEEEEEECCCcEEEEECCCCce--------------------EEEEECCCCcEEEE
Confidence                                   44567778888999998766543                    34567899999999


Q ss_pred             EEcCCCCEEEEEeCCccE-EEE
Q 005459          459 AASKDGMFLAVAGLHGLI-LYD  479 (696)
Q Consensus       459 a~s~dG~~la~ag~dG~i-~w~  479 (696)
                      +|+|||++||+|+.||.+ +|+
T Consensus       333 ~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          333 RVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EECTTSSCEEEEETTSEEEEEC
T ss_pred             EECCCCCEEEEEcCCCCEEecC
Confidence            999999999999999999 995

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.7e-32  Score=293.54  Aligned_cols=271  Identities=14%  Similarity=0.131  Sum_probs=228.9

Q ss_pred             CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeE
Q 005459          205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVV  280 (696)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v  280 (696)
                      .+|...|.++.          |+|+|+.+++++.|+++++||..+++.   +.+|.+.+. ++|+|++++||+|+.||+|
T Consensus       105 ~gh~~~V~~~~----------~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i  174 (410)
T 1vyh_C          105 SGHRSPVTRVI----------FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTI  174 (410)
T ss_dssp             ECCSSCEEEEE----------ECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred             cccCCcEEEEE----------EcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            35566677655          788999999999999999999876543   378998887 9999999999999999999


Q ss_pred             EEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccC
Q 005459          281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP  360 (696)
Q Consensus       281 ~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp  360 (696)
                      ++||+.+ .+.++++.+        |.+.|.+++|+|+|+.|++|+.|++|++||+.++.++.++.+| ...|.++.++|
T Consensus       175 ~iwd~~~-~~~~~~~~~--------h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~~~  244 (410)
T 1vyh_C          175 KLWDFQG-FECIRTMHG--------HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH-REWVRMVRPNQ  244 (410)
T ss_dssp             CEEETTS-SCEEECCCC--------CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECT
T ss_pred             EEEeCCC-CceeEEEcC--------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC-CccEEEEEECC
Confidence            9999987 777888887        9999999999999999999999999999999999999999988 67899999999


Q ss_pred             CCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-----------------------ceeeeeccCCCCc
Q 005459          361 NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-----------------------GKCCLNRGVSGMT  414 (696)
Q Consensus       361 ~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-----------------------~~~~~s~~~d~~~  414 (696)
                      ++    ..+++|+   ++++|+..++++...+.+|...|.++.+                       +..+++++.|+++
T Consensus       245 ~g----~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i  320 (410)
T 1vyh_C          245 DG----TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI  320 (410)
T ss_dssp             TS----SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred             CC----CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeE
Confidence            98    8888887   8999999999999999999888855444                       3469999999999


Q ss_pred             eeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCce-EecCCcc
Q 005459          415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW-RVFGDIT  492 (696)
Q Consensus       415 ~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w-~~f~~~~  492 (696)
                      ++||+..+..                    ...+.+|..+|++++|+|+|++|++|+.||.+ +||+.+++. +.+.  .
T Consensus       321 ~iwd~~~~~~--------------------~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~--~  378 (410)
T 1vyh_C          321 KMWDVSTGMC--------------------LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--A  378 (410)
T ss_dssp             EEEETTTTEE--------------------EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--C
T ss_pred             EEEECCCCce--------------------EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc--C
Confidence            9999876543                    45678899999999999999999999999999 999988752 2221  1


Q ss_pred             ceeeeEEEeEeeeCc--EEEEEEeecCCCeEEEEEeeC
Q 005459          493 QEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPR  528 (696)
Q Consensus       493 ~e~~~~v~~~~w~~~--~lv~~~~~~~~~~~~lr~y~~  528 (696)
                      +  .-.|.+++|.++  +++++     +.+..||+|+.
T Consensus       379 h--~~~v~~l~~~~~~~~l~sg-----s~D~~i~vW~~  409 (410)
T 1vyh_C          379 H--EHFVTSLDFHKTAPYVVTG-----SVDQTVKVWEC  409 (410)
T ss_dssp             C--SSCEEEEEECSSSSCEEEE-----ETTSEEEEEC-
T ss_pred             C--CCcEEEEEEcCCCCEEEEE-----eCCCcEEEEeC
Confidence            2  224788999754  67766     34578999964

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.7e-31  Score=300.48  Aligned_cols=420  Identities=11%  Similarity=0.064  Sum_probs=287.5

Q ss_pred             hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeecccccccee-EE--Eeee--
Q 005459           66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLS-VS--NIVS--  140 (696)
Q Consensus        66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-v~--~~~~--  140 (696)
                      +.+.+.+++|+|||++||+++ ++.+++|+++.+.....                   ....+.++... |.  ++++  
T Consensus        17 ~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~-------------------~~~~~~~h~~~~v~~~~~sp~~   76 (615)
T 1pgu_A           17 QRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVP-------------------PVVQFTGHGSSVVTTVKFSPIK   76 (615)
T ss_dssp             CTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSC-------------------SEEEECTTTTSCEEEEEECSST
T ss_pred             ccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccc-------------------cceEEecCCCceEEEEEECcCC
Confidence            457889999999999999998 78999999975411000                   00001233334 44  4567  


Q ss_pred             CCCeEEEEecCCcEEEEecCCcc-ccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccC
Q 005459          141 DNKHMLLGLSDGSLYSISWKGEF-YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP  219 (696)
Q Consensus       141 ~~~~llv~t~~g~i~~~~w~~~~-~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  219 (696)
                      +++.+++++.||.|++|+.+... .......                             ....+..+...|.++.    
T Consensus        77 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~v~~~~----  123 (615)
T 1pgu_A           77 GSQYLCSGDESGKVIVWGWTFDKESNSVEVN-----------------------------VKSEFQVLAGPISDIS----  123 (615)
T ss_dssp             TCCEEEEEETTSEEEEEEEEEEGGGTEEEEE-----------------------------EEEEEECCSSCEEEEE----
T ss_pred             CCCEEEEecCCCEEEEEeCCCCccccccccc-----------------------------ccchhhcccccEEEEE----
Confidence            78899999999999987653110 0000000                             0001112334466554    


Q ss_pred             cceEEEEEeCCcEEEEeecc----CCceeeeeeec-ceecCCCCeEE-EEEcCCCc-EEEEEecCCeEEEEEccCCCcee
Q 005459          220 MRLLFVLYSNGQLMSCSVSK----KGLKLAEFIKI-DKELGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLI  292 (696)
Q Consensus       220 ~~~~~~~s~dG~~~~~~~~d----~~~~~~~~~~~-~~~~~~~~~v~-v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~  292 (696)
                            ++|||+.+++++.+    +.+.+|+.... ..+.+|...+. ++|+|+++ ++++|+.||.|++||+.+ .+.+
T Consensus       124 ------~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~-~~~~  196 (615)
T 1pgu_A          124 ------WDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP-FKFS  196 (615)
T ss_dssp             ------ECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT-BEEE
T ss_pred             ------EeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC-ccee
Confidence                  77889988888876    57888884322 12367888887 99999998 899999999999999987 7788


Q ss_pred             eEEeeccCCCCCCCCC---CeEEEEECCC-CCeEEEEEcCCcEEEEEccCCeeEEEe-e---cccccceecccccCCCCC
Q 005459          293 RTVSLYDWGYSMDDTG---PVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRLMSTI-R---QISLSSISSPIVKPNQDC  364 (696)
Q Consensus       293 ~~~~~~~~~~~~~h~g---~V~~l~~spd-g~~lasg~~Dg~v~vW~~~~~~~~~~l-~---~~~~~~v~~~~~sp~~~~  364 (696)
                      ..+..        |.+   .|.+++|+|| |++|++|+.|+.|++||+.+++.+..+ .   .| ...|.+++|+ ++  
T Consensus       197 ~~~~~--------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~-~~--  264 (615)
T 1pgu_A          197 ASDRT--------HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV-QGGIFALSWL-DS--  264 (615)
T ss_dssp             EEECS--------SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC-CSCEEEEEES-SS--
T ss_pred             eeecc--------cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc-CCceEEEEEc-CC--
Confidence            88887        888   9999999999 999999999999999999999999998 4   55 7789999999 77  


Q ss_pred             Cccceecce---eeEEEcCCCceEEEEecCC----cceEEEEe--cceeeeeccCCCCceeeeeeecCCeEEEEecC---
Q 005459          365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGS----SERVLIFS--FGKCCLNRGVSGMTYARQVIYGEDRLLVVQSE---  432 (696)
Q Consensus       365 ~~~~l~sg~---~~~~W~~~~~~l~~~~~~~----~~~v~~~~--~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~---  432 (696)
                        +.+++++   .+++|+..+++++.....+    ...+..+.  .++.+++++.|+.+++|++..+... ....++   
T Consensus       265 --~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~  341 (615)
T 1pgu_A          265 --QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVL-KTISGHNKG  341 (615)
T ss_dssp             --SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEE-EEECCCSSC
T ss_pred             --CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEE-EEEeCCCCC
Confidence              7888776   8999999999988887765    24443333  3788999999999999997653221 111110   


Q ss_pred             --------------------------------------------------CCCcceeEEee-------------------
Q 005459          433 --------------------------------------------------DTDELKILHLN-------------------  443 (696)
Q Consensus       433 --------------------------------------------------~~~~~~w~~~~-------------------  443 (696)
                                                                        +.....|....                   
T Consensus       342 v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~  421 (615)
T 1pgu_A          342 ITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTA  421 (615)
T ss_dssp             EEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEE
T ss_pred             EEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEE
Confidence                                                              00001121100                   


Q ss_pred             ----------------cCeeeecCCCceEEEEEcCCCCEEEEEeC-CccE-EEEccCCceEecCCccceeeeEEEeEeee
Q 005459          444 ----------------LPVSYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL  505 (696)
Q Consensus       444 ----------------~~~~~~~~~~~I~~va~s~dG~~la~ag~-dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~  505 (696)
                                      -+.....|..++.+++|+  |+++++++. ||.+ +||+.+++....  ........+..++|.
T Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~--~~~~~~~~v~~~~~s  497 (615)
T 1pgu_A          422 VLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFD--LKTPLRAKPSYISIS  497 (615)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEE--CSSCCSSCEEEEEEC
T ss_pred             EEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcccccc--ccCCccCceEEEEEC
Confidence                            000111356678888888  888888888 8888 998888765321  111222347788885


Q ss_pred             --CcEEEEEEeecCCCeEEEEEeeCCCCC--cccee-EEeecCCccEEEEc----------cCCEEEEEEcCceEEEEEE
Q 005459          506 --GKIIVVCNYIDSSNTYELLFYPRYHLD--QSSLL-CRKSLLAKPIVMDV----------YEDYILVTYRPFDVHIFHV  570 (696)
Q Consensus       506 --~~~lv~~~~~~~~~~~~lr~y~~~~l~--~~~~~-~~~~~~~~~l~~~~----------~~~~llv~~~d~~~~l~~~  570 (696)
                        +.+++++     +.+..|++|+.....  ..... |...+.+  +.+++          .+++|++++.|+.+++|++
T Consensus       498 ~~g~~l~~~-----~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~--~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~  570 (615)
T 1pgu_A          498 PSETYIAAG-----DVMGKILLYDLQSREVKTSRWAFRTSKINA--ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV  570 (615)
T ss_dssp             TTSSEEEEE-----ETTSCEEEEETTTTEEEECCSCCCSSCEEE--EEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred             CCCCEEEEc-----CCCCeEEEeeCCCCcceeEeecCCCCceeE--EEEcCccccccccccCCCEEEEEcCCCcEEEEEC
Confidence              5567766     234689999885211  11111 2222322  67778          8899999999999999987


Q ss_pred             E
Q 005459          571 K  571 (696)
Q Consensus       571 ~  571 (696)
                      .
T Consensus       571 ~  571 (615)
T 1pgu_A          571 K  571 (615)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-31  Score=315.70  Aligned_cols=220  Identities=12%  Similarity=0.110  Sum_probs=157.3

Q ss_pred             cccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eeeCCCe
Q 005459           67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKH  144 (696)
Q Consensus        67 ~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~~~~  144 (696)
                      .+.+.+++|+||+++||+++.||.|+||+........                   .    . .+...|.+  |.+ +++
T Consensus        17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~-------------------~----~-~~~~~V~~l~fsp-g~~   71 (902)
T 2oaj_A           17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI-------------------K----L-EDRSAIKEMRFVK-GIY   71 (902)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE-------------------E----C-SSCCCEEEEEEET-TTE
T ss_pred             CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE-------------------E----c-CCCCCEEEEEEcC-CCE
Confidence            4678999999999999999999999999864211100                   0    0 11223444  445 667


Q ss_pred             EEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEE
Q 005459          145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF  224 (696)
Q Consensus       145 llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  224 (696)
                      |++++.|+.|++|+.+....  .            ..                      + .+...|.++          
T Consensus        72 L~S~s~D~~v~lWd~~~~~~--~------------~~----------------------~-~~~~~V~~v----------  104 (902)
T 2oaj_A           72 LVVINAKDTVYVLSLYSQKV--L------------TT----------------------V-FVPGKITSI----------  104 (902)
T ss_dssp             EEEEETTCEEEEEETTTCSE--E------------EE----------------------E-ECSSCEEEE----------
T ss_pred             EEEEECcCeEEEEECCCCcE--E------------EE----------------------E-cCCCCEEEE----------
Confidence            99999999999966543211  1            00                      0 012235554          


Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeecce--------------ecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCC
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK--------------ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAES  288 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~--------------~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~  288 (696)
                      .++|+|+.+++++.|+++++||....+.              ..+|...+. ++|+|+ +.+|++|+.||+| +||+++ 
T Consensus       105 ~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~-  182 (902)
T 2oaj_A          105 DTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE-  182 (902)
T ss_dssp             ECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT-
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC-
Confidence            4788999999999999999999865432              246777776 999996 5899999999999 999998 


Q ss_pred             CceeeEEeeccCC----------CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEE--ee---cc-----
Q 005459          289 ASLIRTVSLYDWG----------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST--IR---QI-----  348 (696)
Q Consensus       289 ~~~~~~~~~~~~~----------~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~--l~---~~-----  348 (696)
                      .+.++.+.....+          ....|.+.|.+++|+|||++||+|+.||+|++||+.+++++..  +.   .|     
T Consensus       183 ~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~  262 (902)
T 2oaj_A          183 NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPD  262 (902)
T ss_dssp             TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTT
T ss_pred             CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCc
Confidence            6777777652000          1123568899999999999999999999999999988877653  32   12     


Q ss_pred             -------cccceecccccC
Q 005459          349 -------SLSSISSPIVKP  360 (696)
Q Consensus       349 -------~~~~v~~~~~sp  360 (696)
                             +...|.+++|+|
T Consensus       263 ~~~~~~~~~~~V~~v~w~~  281 (902)
T 2oaj_A          263 YIRDSSTNAAKISKVYWMC  281 (902)
T ss_dssp             CCCCCSSCCCEEEEEEEEE
T ss_pred             CCCCCccccCCeeEEEEEe
Confidence                   134688888854

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.1e-30  Score=271.25  Aligned_cols=288  Identities=14%  Similarity=0.126  Sum_probs=217.0

Q ss_pred             hcccccEEEEcCCC-cEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCC
Q 005459           66 REGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDN  142 (696)
Q Consensus        66 ~~G~~~~v~wsPDg-~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~  142 (696)
                      +.+.+.+++|+|++ ++|++++.||+|++|++........                  .....+.++...|.  ++.+++
T Consensus        16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~------------------~~~~~~~~h~~~v~~~~~s~dg   77 (319)
T 3frx_A           16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG------------------VPVRSFKGHSHIVQDCTLTADG   77 (319)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE------------------EEEEEEECCSSCEEEEEECTTS
T ss_pred             ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc------------------ccceEEeCCcccEEEEEECCCC
Confidence            45788999999975 8999999999999999975432110                  00011233444454  457788


Q ss_pred             CeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcce
Q 005459          143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL  222 (696)
Q Consensus       143 ~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  222 (696)
                      ..+++++.|+.|++|+..  ......                                  .+..+...|.++.       
T Consensus        78 ~~l~s~s~D~~v~~wd~~--~~~~~~----------------------------------~~~~h~~~v~~~~-------  114 (319)
T 3frx_A           78 AYALSASWDKTLRLWDVA--TGETYQ----------------------------------RFVGHKSDVMSVD-------  114 (319)
T ss_dssp             SEEEEEETTSEEEEEETT--TTEEEE----------------------------------EEECCSSCEEEEE-------
T ss_pred             CEEEEEeCCCEEEEEECC--CCCeeE----------------------------------EEccCCCcEEEEE-------
Confidence            999999999999986543  221110                                  1123445566655       


Q ss_pred             EEEEEeCCcEEEEeeccCCceeeeeeecc--eecCCCCeEE-EEEcCC------CcEEEEEecCCeEEEEEccCCCceee
Q 005459          223 LFVLYSNGQLMSCSVSKKGLKLAEFIKID--KELGSGDAVC-ASIAPE------QQILAVGTRRGVVELYDLAESASLIR  293 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~v~-v~~sp~------~~~la~g~~dg~v~vw~~~~~~~~~~  293 (696)
                         ++++|+.+++++.|+++++|+.....  .+.+|.+.+. ++++|.      +.+|++|+.||+|++||+.. .+...
T Consensus       115 ---~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~  190 (319)
T 3frx_A          115 ---IDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEA  190 (319)
T ss_dssp             ---ECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEE
T ss_pred             ---EcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhhe
Confidence               77899999999999999999975332  2367888887 999985      45899999999999999987 67777


Q ss_pred             EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459          294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT  373 (696)
Q Consensus       294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~  373 (696)
                      .+.+        |.++|.+++|+|||++|++|+.||+|++||+.+++++.++..+  ..|.+++|+|++    ..++++.
T Consensus       191 ~~~~--------h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~----~~la~~~  256 (319)
T 3frx_A          191 DFIG--------HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNR----YWLAAAT  256 (319)
T ss_dssp             EECC--------CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSS----SEEEEEE
T ss_pred             eecC--------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCC----CEEEEEc
Confidence            7777        9999999999999999999999999999999999999998865  569999999998    6666554


Q ss_pred             --eeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecC
Q 005459          374 --SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ  451 (696)
Q Consensus       374 --~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  451 (696)
                        .+.+|+.+...++.....+                                                   .......|
T Consensus       257 ~~~i~v~~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~~  285 (319)
T 3frx_A          257 ATGIKVFSLDPQYLVDDLRPE---------------------------------------------------FAGYSKAA  285 (319)
T ss_dssp             TTEEEEEEETTEEEEEEECCC---------------------------------------------------CTTCCGGG
T ss_pred             CCCcEEEEeCcCeeeeccCcc---------------------------------------------------ccccccCc
Confidence              5666666554433322110                                                   01112245


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCccE-EEEccCC
Q 005459          452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK  483 (696)
Q Consensus       452 ~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg  483 (696)
                      ...+.+++|||||++||+|+.||.+ +||+.++
T Consensus       286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             CcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            6679999999999999999999999 9999875

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.1e-31  Score=275.12  Aligned_cols=275  Identities=17%  Similarity=0.158  Sum_probs=227.9

Q ss_pred             CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce-----ecCCCCeEE-EEEcCCCcEEEEEecCC
Q 005459          205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAVC-ASIAPEQQILAVGTRRG  278 (696)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~v~-v~~sp~~~~la~g~~dg  278 (696)
                      ..|...|.+++|++..      .++++.+++++.|+++++|+....+.     +.+|...+. ++|+|++.++|+|+.||
T Consensus        29 ~~H~~~V~~v~~~~~~------~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~  102 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNK------KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA  102 (321)
T ss_dssp             TSSSSCEEEEEEC-------------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred             ccCCCcEEEEEEecCC------CCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence            3567788888765431      24678999999999999999765431     368998887 99999999999999999


Q ss_pred             eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccc
Q 005459          279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV  358 (696)
Q Consensus       279 ~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~  358 (696)
                      +|++||+.+ ++.+..+..        |...+.+++|+|||++|++|+.|+.|++|++..++...++..+ ...+.+++|
T Consensus       103 ~i~lWd~~~-~~~~~~~~~--------~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~-~~~v~~~~~  172 (321)
T 3ow8_A          103 HIRLWDLEN-GKQIKSIDA--------GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR-GKFILSIAY  172 (321)
T ss_dssp             EEEEEETTT-TEEEEEEEC--------CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECS-SSCEEEEEE
T ss_pred             cEEEEECCC-CCEEEEEeC--------CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCC-CceEEEEEE
Confidence            999999988 778888887        8889999999999999999999999999999999888888887 567999999


Q ss_pred             cCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecC
Q 005459          359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSE  432 (696)
Q Consensus       359 sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~  432 (696)
                      +|++    +.+++|+   .+++|+..+++++..+.+|...|  ++|++ ++.+++++.|+++++|++..+..        
T Consensus       173 spdg----~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~--------  240 (321)
T 3ow8_A          173 SPDG----KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL--------  240 (321)
T ss_dssp             CTTS----SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE--------
T ss_pred             CCCC----CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce--------
Confidence            9999    8899887   89999999999999999998888  55666 88999999999999999865543        


Q ss_pred             CCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE-ecCCccceeeeEEEeEeeeC--cE
Q 005459          433 DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWLG--KI  508 (696)
Q Consensus       433 ~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~-~f~~~~~e~~~~v~~~~w~~--~~  508 (696)
                                  ...+.+|..+|.+++|+|||++||+|+.||.+ +||+.+++.. .|..    ..-.|.+++|.+  ..
T Consensus       241 ------------~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~----h~~~v~~v~~s~~g~~  304 (321)
T 3ow8_A          241 ------------AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD----HQDQVWGVKYNGNGSK  304 (321)
T ss_dssp             ------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----CSSCEEEEEECTTSSE
T ss_pred             ------------eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC----CCCcEEEEEECCCCCE
Confidence                        45677899999999999999999999999999 9999988643 2221    122477899974  46


Q ss_pred             EEEEEeecCCCeEEEEEeeC
Q 005459          509 IVVCNYIDSSNTYELLFYPR  528 (696)
Q Consensus       509 lv~~~~~~~~~~~~lr~y~~  528 (696)
                      |+++     +.+..|++|+.
T Consensus       305 l~s~-----~~d~~i~vwd~  319 (321)
T 3ow8_A          305 IVSV-----GDDQEIHIYDC  319 (321)
T ss_dssp             EEEE-----ETTCCEEEEEC
T ss_pred             EEEE-----eCCCeEEEEeC
Confidence            6666     34578999974

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.4e-32  Score=289.53  Aligned_cols=294  Identities=15%  Similarity=0.167  Sum_probs=213.6

Q ss_pred             hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeE
Q 005459           66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM  145 (696)
Q Consensus        66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~l  145 (696)
                      +.+.+.+++|+||+++||+++.||+|++||+..+........|.                     ....-.++.++++.+
T Consensus        65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~---------------------~~v~~~~~s~~g~~l  123 (380)
T 3iz6_a           65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC---------------------PWVMECAFAPNGQSV  123 (380)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC---------------------TTCCCCEECTTSSEE
T ss_pred             cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCC---------------------CCEEEEEECCCCCEE
Confidence            45789999999999999999999999999986443211111111                     011123567889999


Q ss_pred             EEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEE
Q 005459          146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV  225 (696)
Q Consensus       146 lv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  225 (696)
                      ++++.|+.+++|+..........                             ......+.++...+.++.          
T Consensus       124 as~~~d~~v~iw~~~~~~~~~~~-----------------------------~~~~~~~~gh~~~v~~~~----------  164 (380)
T 3iz6_a          124 ACGGLDSACSIFNLSSQADRDGN-----------------------------MPVSRVLTGHKGYASSCQ----------  164 (380)
T ss_dssp             EECCSSSCCEEEECCCCSSCCCS-----------------------------STTCCBCCCCSSCCCCCB----------
T ss_pred             EEeeCCCcEEEEECCCCccccCC-----------------------------ccceeeccCCCcceEEEE----------
Confidence            99999999999766432211000                             000011223444444433          


Q ss_pred             EEeC-CcEEEEeeccCCceeeeeeeccee--------cCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeE
Q 005459          226 LYSN-GQLMSCSVSKKGLKLAEFIKIDKE--------LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRT  294 (696)
Q Consensus       226 ~s~d-G~~~~~~~~d~~~~~~~~~~~~~~--------~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~  294 (696)
                      +.|+ +..+++++.|+++++||..+++..        .+|...+. ++|+| ++++|++|+.||+|++||++.....+++
T Consensus       165 ~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~  244 (380)
T 3iz6_a          165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT  244 (380)
T ss_dssp             CCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE
T ss_pred             EecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence            4454 456888999999999998766543        46777776 99987 8999999999999999999864677888


Q ss_pred             EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeeccccc------ceecccccCCCCCCccc
Q 005459          295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS------SISSPIVKPNQDCKYEP  368 (696)
Q Consensus       295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~------~v~~~~~sp~~~~~~~~  368 (696)
                      +.+        |.+.|++++|+|||++|++|+.||+|++||+.++..+..+..+...      .|++             
T Consensus       245 ~~~--------h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~-------------  303 (380)
T 3iz6_a          245 YHG--------HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTS-------------  303 (380)
T ss_dssp             ECC--------CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSE-------------
T ss_pred             ECC--------cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEE-------------
Confidence            888        9999999999999999999999999999999999888777654110      1222             


Q ss_pred             eecceeeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCee
Q 005459          369 LMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS  447 (696)
Q Consensus       369 l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  447 (696)
                                                  ++|++ ++.+++++.|+.+++||+..++...                .+...
T Consensus       304 ----------------------------~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~----------------~~~~~  339 (380)
T 3iz6_a          304 ----------------------------VAFSISGRLLFAGYSNGDCYVWDTLLAEMVL----------------NLGTL  339 (380)
T ss_dssp             ----------------------------EEECSSSSEEEEECTTSCEEEEETTTCCEEE----------------EECCS
T ss_pred             ----------------------------EEECCCCCEEEEEECCCCEEEEECCCCceEE----------------EEecc
Confidence                                        33344 5567778888889999876554310                01112


Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       448 ~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                      ..+|..+|.+++|+|||++||+||.||.+ +|++..++
T Consensus       340 ~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          340 QNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             CSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             cCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            25799999999999999999999999999 99987754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.2e-30  Score=272.42  Aligned_cols=285  Identities=14%  Similarity=0.156  Sum_probs=210.2

Q ss_pred             ccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCC
Q 005459          128 FAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI  207 (696)
Q Consensus       128 ~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~  207 (696)
                      +.++...|.++..+++.|++++.||.|++|+.+........            .                    .....+
T Consensus        10 ~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~------------~--------------------~~~~~h   57 (330)
T 2hes_X           10 LKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLID------------V--------------------LDETAH   57 (330)
T ss_dssp             EECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEE------------E--------------------ECTTCC
T ss_pred             eccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEE------------E--------------------EecCCc
Confidence            34566788888877789999999999999765432111000            0                    001124


Q ss_pred             cccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeec----------ceecCCCCeEE-EEEcCCCcEEEEEec
Q 005459          208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI----------DKELGSGDAVC-ASIAPEQQILAVGTR  276 (696)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~----------~~~~~~~~~v~-v~~sp~~~~la~g~~  276 (696)
                      ...|.+++          ++|+|+++++++.|+++++|+....          ..+.+|.+.+. ++|+|++++||+|+.
T Consensus        58 ~~~v~~v~----------~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~  127 (330)
T 2hes_X           58 KKAIRSVA----------WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR  127 (330)
T ss_dssp             CSCEEEEE----------ECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET
T ss_pred             cCCEEEEE----------ECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence            55677655          7789999999999999999987421          12368988887 999999999999999


Q ss_pred             CCeEEEEEccCCC---ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC--eeEEEeeccccc
Q 005459          277 RGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLS  351 (696)
Q Consensus       277 dg~v~vw~~~~~~---~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~--~~~~~l~~~~~~  351 (696)
                      ||+|++||++..+   +.+..+.+        |.+.|.+++|+|||++|++|+.|++|++|++..+  +++.++.+| ..
T Consensus       128 D~~v~iwd~~~~~~~~~~~~~~~~--------h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h-~~  198 (330)
T 2hes_X          128 DKSVWIWETDESGEEYECISVLQE--------HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH-EG  198 (330)
T ss_dssp             TSCEEEEECCTTCCCCEEEEEECC--------CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC-SS
T ss_pred             CCEEEEEeccCCCCCeEEEEEecc--------CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCC-CC
Confidence            9999999995422   34566666        9999999999999999999999999999999876  678888888 77


Q ss_pred             ceecccccCCCCCCccceecce---eeEEEcCCCc--------eEEEEecC-CcceEEEEec--ceeeeeccCCCCceee
Q 005459          352 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--------RLYAIEEG-SSERVLIFSF--GKCCLNRGVSGMTYAR  417 (696)
Q Consensus       352 ~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~--------~l~~~~~~-~~~~v~~~~~--~~~~~s~~~d~~~~~w  417 (696)
                      .|.+++|+|+..  ...+++|+   ++++|+..+.        .+.....+ |...|..+.+  ...+++++.|+++++|
T Consensus       199 ~v~~~~~~~~~~--~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw  276 (330)
T 2hes_X          199 TVWSSDFDKTEG--VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVY  276 (330)
T ss_dssp             CEEEEEECCSSS--SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEE
T ss_pred             cEEEEEecCCCC--eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEE
Confidence            899999999831  15678876   8999998654        34445544 8888855554  6689999999999999


Q ss_pred             eeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC-ceEEEEEcC--CCCEEEEEeCCccE-EEEccC
Q 005459          418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW-PVQHVAASK--DGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~I~~va~s~--dG~~la~ag~dG~i-~w~~~s  482 (696)
                      +...++.+.                 +.....+|.. +|.+++|+|  ||++||+||.||.+ +|++++
T Consensus       277 ~~~~~~~~~-----------------~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          277 EEVDGEWKV-----------------FAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEETTEEEE-----------------EEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EcCCCceEE-----------------EeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            976543211                 0112346776 899999999  79999999999999 999864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.98  E-value=2.5e-30  Score=269.15  Aligned_cols=223  Identities=17%  Similarity=0.227  Sum_probs=188.4

Q ss_pred             EEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG  301 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~  301 (696)
                      ++|||+.+++++.|+++++||...++.   +.+|...+. ++|+|++++|++|+.||+|++||+++ ++.+..+..    
T Consensus        73 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~----  147 (312)
T 4ery_A           73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-GKCLKTLPA----  147 (312)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-CCEEEEECC----
T ss_pred             EcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CEEEEEecC----
Confidence            566777777777777777777665433   256777776 99999999999999999999999988 777888877    


Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEE
Q 005459          302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQW  378 (696)
Q Consensus       302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W  378 (696)
                          |.++|.+++|+|+|+.|++|+.||.|++||+.+++.+..+..++...+..++|+|++    +.++++.   .+++|
T Consensus       148 ----~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~d~~i~iw  219 (312)
T 4ery_A          148 ----HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG----KYILAATLDNTLKLW  219 (312)
T ss_dssp             ----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTS----SEEEEEETTTEEEEE
T ss_pred             ----CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCC----CEEEEEcCCCeEEEE
Confidence                999999999999999999999999999999999888888766556779999999998    8888776   89999


Q ss_pred             cCCCceEEEEecCCcceE----EEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCC
Q 005459          379 DEYGYRLYAIEEGSSERV----LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN  452 (696)
Q Consensus       379 ~~~~~~l~~~~~~~~~~v----~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  452 (696)
                      +..+++++....+|....    ..+.+  ++.+++++.|+.+++|++..++.                    ...+.+|.
T Consensus       220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~--------------------~~~~~~h~  279 (312)
T 4ery_A          220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI--------------------VQKLQGHT  279 (312)
T ss_dssp             ETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE--------------------EEEECCCS
T ss_pred             ECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh--------------------hhhhhccC
Confidence            999999998888776542    33433  77899999999999999866543                    45678899


Q ss_pred             CceEEEEEcCCCCEEEEEe--CCccE-EEEcc
Q 005459          453 WPVQHVAASKDGMFLAVAG--LHGLI-LYDIR  481 (696)
Q Consensus       453 ~~I~~va~s~dG~~la~ag--~dG~i-~w~~~  481 (696)
                      .+|.+++|+|+++++|+++  .||.+ +|+..
T Consensus       280 ~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          280 DVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             CcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            9999999999999999997  69999 99864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.8e-30  Score=278.33  Aligned_cols=340  Identities=14%  Similarity=0.138  Sum_probs=245.2

Q ss_pred             hcccccEEEEcCCCc-EEEEEecCcEEEEEEE----EecCcccccCCCCCCCceeeeeeEEEeeeccc------ccccee
Q 005459           66 REGENLQAVWSPDTK-LIAVVTSSLYLHIFKV----QITEKSIQIGGKQPSGLFFIKISLVLNEQLPF------AEKGLS  134 (696)
Q Consensus        66 ~~G~~~~v~wsPDg~-~lav~t~dg~l~l~~l----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~  134 (696)
                      +.+.+.+++|+|||+ +||+++.||.|++|++    ..+..             ++.+........++      ..+...
T Consensus        44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (425)
T 1r5m_A           44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKK-------------YWKLTIIAELRHPFALSASSGKTTNQ  110 (425)
T ss_dssp             ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC-------------------CEEEEEEEEEECCCCCC------CBC
T ss_pred             ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccc-------------cccccccccccccccccccccCCCCc
Confidence            347889999999999 9999999999999999    54431             01110011111111      123335


Q ss_pred             EEE--eeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEE
Q 005459          135 VSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAII  212 (696)
Q Consensus       135 v~~--~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~  212 (696)
                      |++  +.++++.|++++.+|.|++|+.++....                                     .+..+...|.
T Consensus       111 v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~-------------------------------------~~~~~~~~v~  153 (425)
T 1r5m_A          111 VTCLAWSHDGNSIVTGVENGELRLWNKTGALLN-------------------------------------VLNFHRAPIV  153 (425)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTSCEEE-------------------------------------EECCCCSCEE
T ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee-------------------------------------eccCCCccEE
Confidence            554  4667889999999999998652221111                                     1112344566


Q ss_pred             EEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCe---------------EE-EEEcCCCcEEEE
Q 005459          213 WLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDA---------------VC-ASIAPEQQILAV  273 (696)
Q Consensus       213 ~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~---------------v~-v~~sp~~~~la~  273 (696)
                      ++.          ++|+|+.+++++.|+.+++|+...++..   ..+...               +. ++|+|++ .+++
T Consensus       154 ~~~----------~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  222 (425)
T 1r5m_A          154 SVK----------WNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVI  222 (425)
T ss_dssp             EEE----------ECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEE
T ss_pred             EEE----------ECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEE
Confidence            655          6788999999999999999998765433   233332               44 8999985 5888


Q ss_pred             EecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccce
Q 005459          274 GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI  353 (696)
Q Consensus       274 g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v  353 (696)
                      |+.||.|++||+.. .+.+..+..        |.++|.+++|+|+|+.|++++.|+.|++||+..++.+..+.+| ...+
T Consensus       223 ~~~~g~i~~~d~~~-~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i  292 (425)
T 1r5m_A          223 PGPKGAIFVYQITE-KTPTGKLIG--------HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH-SQSI  292 (425)
T ss_dssp             ECGGGCEEEEETTC-SSCSEEECC--------CSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC-SSCE
T ss_pred             EcCCCeEEEEEcCC-Cceeeeecc--------CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC-CccE
Confidence            99999999999998 677777777        9999999999999999999999999999999999888888877 6789


Q ss_pred             ecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEE--Eec-ceeeeeccCCCCceeeeeeecCCeEE
Q 005459          354 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLL  427 (696)
Q Consensus       354 ~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~  427 (696)
                      .+++|+|++     .++++.   .+.+|+..+++++.....|...+..  +++ ++.+++++.|+.+++|++..+.....
T Consensus       293 ~~~~~~~~~-----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~  367 (425)
T 1r5m_A          293 VSASWVGDD-----KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSR  367 (425)
T ss_dssp             EEEEEETTT-----EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC---
T ss_pred             EEEEECCCC-----EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcccee
Confidence            999999985     455554   8999999999999998888888844  555 78999999999999999876652111


Q ss_pred             EEecCCCCcceeEEeecCeeeecCCC--ceEEEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459          428 VVQSEDTDELKILHLNLPVSYISQNW--PVQHVAASKDGMFLAVAGLHGLI-LYDIR  481 (696)
Q Consensus       428 ~~~~~~~~~~~w~~~~~~~~~~~~~~--~I~~va~s~dG~~la~ag~dG~i-~w~~~  481 (696)
                      ...+.......-...+....+.+|..  +|.+++|+|||++||+++.||.+ +|++.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          368 SLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             -----------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             eeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            00000000000011112345667866  99999999999999999999999 99975

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.98  E-value=3.1e-30  Score=267.99  Aligned_cols=246  Identities=9%  Similarity=0.028  Sum_probs=201.7

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      +.|+|||+.+++++.|+++++||..+++..   ..|...+. ++|+|++++||+|+.|++|++||+.+ ++.+..+.+  
T Consensus        19 ~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~-~~~~~~~~~--   95 (304)
T 2ynn_A           19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT-GEKVVDFEA--   95 (304)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT-CCEEEEEEC--
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC-CcEEEEEeC--
Confidence            448899999999999999999998765433   57888877 99999999999999999999999998 788888888  


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC-eeEEEeecccccceecccccCC-CCCCccceecce---e
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPN-QDCKYEPLMSGT---S  374 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~-~~~~~l~~~~~~~v~~~~~sp~-~~~~~~~l~sg~---~  374 (696)
                            |.+.|.+++|+|++++|++|+.|++|++||+.++ .+...+.+| ...|.+++|+|. +    ..+++|+   +
T Consensus        96 ------h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h-~~~v~~v~~~p~~~----~~l~sgs~D~~  164 (304)
T 2ynn_A           96 ------HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGH-EHFVMCVAFNPKDP----STFASGCLDRT  164 (304)
T ss_dssp             ------CSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCC-CSCEEEEEECTTCT----TEEEEEETTSE
T ss_pred             ------CCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhccc-CCcEEEEEECCCCC----CEEEEEeCCCe
Confidence                  9999999999999999999999999999999876 566778877 778999999994 4    6788887   8


Q ss_pred             eEEEcCCCceEEEEe-cCCcceE--EEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee
Q 005459          375 MMQWDEYGYRLYAIE-EGSSERV--LIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY  448 (696)
Q Consensus       375 ~~~W~~~~~~l~~~~-~~~~~~v--~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  448 (696)
                      +++|+.......... .+|...+  +.+.+   ++.+++++.|+++++|++..+..                    ...+
T Consensus       165 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~--------------------~~~~  224 (304)
T 2ynn_A          165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC--------------------VATL  224 (304)
T ss_dssp             EEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE--------------------EEEE
T ss_pred             EEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc--------------------ceee
Confidence            999999766544333 3454555  44444   56899999999999999865543                    4577


Q ss_pred             ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC
Q 005459          449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG  506 (696)
Q Consensus       449 ~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~  506 (696)
                      .+|..+|.+++|+|++++||+|+.||.+ +||..+++.........   -.+..++|++
T Consensus       225 ~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~---~~~~~~~~~~  280 (304)
T 2ynn_A          225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL---ERSWCIATHP  280 (304)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS---SSEEEEEECT
T ss_pred             CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC---ccEEEEEECC
Confidence            8999999999999999999999999999 99999876432111111   1255777764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.98  E-value=9.8e-32  Score=290.83  Aligned_cols=345  Identities=12%  Similarity=0.111  Sum_probs=248.1

Q ss_pred             cccccEEEEcCCCc-EEEEE----------ecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeE
Q 005459           67 EGENLQAVWSPDTK-LIAVV----------TSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV  135 (696)
Q Consensus        67 ~G~~~~v~wsPDg~-~lav~----------t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v  135 (696)
                      ...+.+++|+|||+ +||++          +.||.|++|++..+.......                     ...+...|
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~---------------------~~~~~~~v   70 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA---------------------SLQVDSKF   70 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC---------------------CCCCSSCE
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE---------------------EEecCCce
Confidence            34567899999998 99999          789999999997554210000                     00112233


Q ss_pred             E--EeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEE
Q 005459          136 S--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW  213 (696)
Q Consensus       136 ~--~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~  213 (696)
                      .  ++.+++..|++++.||.|++|+.+........          +                      ..+..+...|.+
T Consensus        71 ~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~----------~----------------------~~~~~h~~~v~~  118 (416)
T 2pm9_A           71 NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINS----------M----------------------ARFSNHSSSVKT  118 (416)
T ss_dssp             EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCE----------E----------------------EECCCSSSCCCE
T ss_pred             EEEEECCCCCeEEEEccCCeEEEeecccccccccc----------h----------------------hhccCCccceEE
Confidence            3  44677889999999999998665432111000          0                      012234445655


Q ss_pred             EEEccCcceEEEEEeC-CcEEEEeeccCCceeeeeeecc------e---e---cCCCCeEE-EEEcCC-CcEEEEEecCC
Q 005459          214 LELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKID------K---E---LGSGDAVC-ASIAPE-QQILAVGTRRG  278 (696)
Q Consensus       214 ~~~~~~~~~~~~~s~d-G~~~~~~~~d~~~~~~~~~~~~------~---~---~~~~~~v~-v~~sp~-~~~la~g~~dg  278 (696)
                      +.          ++|+ ++++++++.|+++++||....+      .   .   .+|...+. ++|+|+ +.+|++|+.||
T Consensus       119 ~~----------~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg  188 (416)
T 2pm9_A          119 VK----------FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN  188 (416)
T ss_dssp             EE----------ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS
T ss_pred             EE----------EcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC
Confidence            55          6777 8889999999999999987664      1   1   35776666 999999 79999999999


Q ss_pred             eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCC-CeEEEEEcCC---cEEEEEccCC-eeEEEee-cccccc
Q 005459          279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSR---GLTVWSVSGC-RLMSTIR-QISLSS  352 (696)
Q Consensus       279 ~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg-~~lasg~~Dg---~v~vW~~~~~-~~~~~l~-~~~~~~  352 (696)
                      .|++||+++ .+.+..+....  ...+|...|.+++|+|+| +.|++++.|+   .|++||+..+ .....+. +| ...
T Consensus       189 ~v~iwd~~~-~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~-~~~  264 (416)
T 2pm9_A          189 FASIWDLKA-KKEVIHLSYTS--PNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH-QKG  264 (416)
T ss_dssp             CEEEEETTT-TEEEEEECCCC--CSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC-SSC
T ss_pred             CEEEEECCC-CCcceEEeccc--cccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc-cCc
Confidence            999999988 67777666511  011238899999999997 6899999998   9999999875 6677777 66 678


Q ss_pred             eecccccC-CCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-c-eeeeeccCCCCceeeeeeecCC
Q 005459          353 ISSPIVKP-NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-G-KCCLNRGVSGMTYARQVIYGED  424 (696)
Q Consensus       353 v~~~~~sp-~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~-~~~~s~~~d~~~~~w~~~~~~~  424 (696)
                      |.+++|+| ++    ..+++++   ++++|+..+++.+....+|...|  +++++ + +.+++++.|+.+++|++.....
T Consensus       265 v~~~~~s~~~~----~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~  340 (416)
T 2pm9_A          265 ILSLDWCHQDE----HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN  340 (416)
T ss_dssp             EEEEEECSSCS----SCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred             eeEEEeCCCCC----CeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence            99999999 76    7888876   89999999999999998998888  66666 5 7899999999999999876653


Q ss_pred             eEEEEe----cCCCCcceeEEe------------ecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC
Q 005459          425 RLLVVQ----SEDTDELKILHL------------NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK  483 (696)
Q Consensus       425 ~~~~~~----~~~~~~~~w~~~------------~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg  483 (696)
                      ......    ....+...|.+.            .+ .....|..++.+++|||||++||+|+.||.+ +|++.++
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          341 TLDEQETETKQQESETDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             SSCC----------------------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             CcccccccccccCCcccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence            211000    000001111100            11 1112367789999999999999999999999 9998874

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.98  E-value=9.4e-31  Score=283.84  Aligned_cols=329  Identities=14%  Similarity=0.102  Sum_probs=244.6

Q ss_pred             ccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEe
Q 005459           70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL  149 (696)
Q Consensus        70 ~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t  149 (696)
                      ...++|+|||++|++++.||.+++|++..........                      ......+..+.++++.+++++
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~~~  116 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK----------------------RADYTAVDTAKLQMRRFILGT  116 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC----------------------SCCEEEEEEECSSSCEEEEEE
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe----------------------cCCceEEEEEecCCCEEEEEE
Confidence            4579999999999999999999999987543221110                      011123345677889999999


Q ss_pred             cCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeC
Q 005459          150 SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSN  229 (696)
Q Consensus       150 ~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~d  229 (696)
                      .+|.|++|+.+.  ....                                  ..+..+...|.+++          ++||
T Consensus       117 ~dg~i~iwd~~~--~~~~----------------------------------~~~~~h~~~v~~~~----------~~~~  150 (420)
T 3vl1_A          117 TEGDIKVLDSNF--NLQR----------------------------------EIDQAHVSEITKLK----------FFPS  150 (420)
T ss_dssp             TTSCEEEECTTS--CEEE----------------------------------EETTSSSSCEEEEE----------ECTT
T ss_pred             CCCCEEEEeCCC--ccee----------------------------------eecccccCccEEEE----------ECCC
Confidence            999999865432  1111                                  01123455677765          6789


Q ss_pred             CcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC----
Q 005459          230 GQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG----  301 (696)
Q Consensus       230 G~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~----  301 (696)
                      |+.+++++.|+++++||...++.   +.+|...+. ++|+|++++|++|+.||+|++||+++ ++.+..+......    
T Consensus       151 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~v  229 (420)
T 3vl1_A          151 GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT-GTTIHTFNRKENPHDGV  229 (420)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-TEEEEEECBTTBTTCCE
T ss_pred             CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC-CceeEEeecCCCCCCCc
Confidence            99999999999999999876543   367888887 99999999999999999999999988 6777776642110    


Q ss_pred             ------------CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCcc-c
Q 005459          302 ------------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-P  368 (696)
Q Consensus       302 ------------~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~-~  368 (696)
                                  ....|..++.+++|+|||++|++|+.||.|++||+.+++....+...+...|.+++|+|++    . .
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~  305 (420)
T 3vl1_A          230 NSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN----ANY  305 (420)
T ss_dssp             EEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC----TTE
T ss_pred             cEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCC----CCE
Confidence                        0001345566667789999999999999999999999888888776557889999999998    6 7


Q ss_pred             eecce---eeEEEcCCCce-EEEEecC-CcceEEEE--ecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEE
Q 005459          369 LMSGT---SMMQWDEYGYR-LYAIEEG-SSERVLIF--SFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH  441 (696)
Q Consensus       369 l~sg~---~~~~W~~~~~~-l~~~~~~-~~~~v~~~--~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~  441 (696)
                      +++|+   .+.+|+..+++ ++....+ |...+..+  ..++.+++++.|+++++|++...+....+           ..
T Consensus       306 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~-----------~~  374 (420)
T 3vl1_A          306 IYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPA-----------IE  374 (420)
T ss_dssp             EEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCE-----------EC
T ss_pred             EEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccc-----------ee
Confidence            88877   89999998764 3444444 55566333  33889999999999999998764331000           01


Q ss_pred             eecCeeeecCCCceEEEEEcCCCC---EEEEEeCCccE-EEEccC
Q 005459          442 LNLPVSYISQNWPVQHVAASKDGM---FLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       442 ~~~~~~~~~~~~~I~~va~s~dG~---~la~ag~dG~i-~w~~~s  482 (696)
                      ...+..+.+|..+|.+++|+|||+   .++++|.+|.+ +|+++.
T Consensus       375 ~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          375 FETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             TTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             ccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            112445668889999999999999   78888889999 999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=2e-30  Score=274.22  Aligned_cols=267  Identities=13%  Similarity=0.095  Sum_probs=203.7

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecc-----e---------ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKID-----K---------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES  288 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~-----~---------~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~  288 (696)
                      +.|+|||+++++++ +.++++|+.....     .         ...+...+. ++|+|++ .|++|+.||+|+|||+++ 
T Consensus        36 ~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~-  112 (344)
T 4gqb_B           36 ARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDE-  112 (344)
T ss_dssp             EEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECT-
T ss_pred             EEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccC-
Confidence            45899999888766 7789999854210     0         012345566 9999995 577999999999999987 


Q ss_pred             CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccc
Q 005459          289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP  368 (696)
Q Consensus       289 ~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~  368 (696)
                      ++.+..+....    .+|.+.|++|+|+|||++||+|+.|++|++||+.+++++.++.+| ...|.+++|+|++.   ..
T Consensus       113 ~~~~~~~~~~~----~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h-~~~V~~~~~~~~~~---~~  184 (344)
T 4gqb_B          113 NETLIVSKFCK----YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH-AAQVTCVAASPHKD---SV  184 (344)
T ss_dssp             TSSCEEEEEEE----ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECSSCT---TE
T ss_pred             CCceeEeeccc----cCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc-CCceEEEEecCCCC---Cc
Confidence            55443332100    029999999999999999999999999999999999999999998 78899999999872   35


Q ss_pred             eecce---eeEEEcCCCceEEEEecC--CcceE--EEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCccee
Q 005459          369 LMSGT---SMMQWDEYGYRLYAIEEG--SSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI  439 (696)
Q Consensus       369 l~sg~---~~~~W~~~~~~l~~~~~~--~~~~v--~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w  439 (696)
                      +++|+   ++++||.++++.......  +...+  +++++  ++.+++++.|+++++||+..++.               
T Consensus       185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~---------------  249 (344)
T 4gqb_B          185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC---------------  249 (344)
T ss_dssp             EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C---------------
T ss_pred             eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE---------------
Confidence            67776   899999998887776532  33344  45555  56788999999999999877654               


Q ss_pred             EEeecCeeeecCCCceEEEEEcCCC-CEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC--cEEEEEEee
Q 005459          440 LHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYI  515 (696)
Q Consensus       440 ~~~~~~~~~~~~~~~I~~va~s~dG-~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~  515 (696)
                           ...+.+|..+|++++|+||| ++||+|+.||.+ +||+.+++...+.  .|+  -.|.+++|.+  ..+++.|  
T Consensus       250 -----~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~--~H~--~~V~~v~~sp~~~~llas~--  318 (344)
T 4gqb_B          250 -----VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQ--AHR--DFVRDATWSPLNHSLLTTV--  318 (344)
T ss_dssp             -----CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEEC--CCS--SCEEEEEECSSSTTEEEEE--
T ss_pred             -----EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEc--CCC--CCEEEEEEeCCCCeEEEEE--
Confidence                 56788999999999999998 589999999999 9999998754332  222  3488999973  3455432  


Q ss_pred             cCCCeEEEEEeeCC
Q 005459          516 DSSNTYELLFYPRY  529 (696)
Q Consensus       516 ~~~~~~~lr~y~~~  529 (696)
                        +.+..|++|...
T Consensus       319 --s~D~~v~~w~v~  330 (344)
T 4gqb_B          319 --GWDHQVVHHVVP  330 (344)
T ss_dssp             --ETTSCEEEEECC
T ss_pred             --cCCCeEEEEECC
Confidence              234789999774

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=2.9e-29  Score=263.45  Aligned_cols=290  Identities=19%  Similarity=0.208  Sum_probs=212.3

Q ss_pred             hcccccEEEEcCC-CcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eeeCC
Q 005459           66 REGENLQAVWSPD-TKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDN  142 (696)
Q Consensus        66 ~~G~~~~v~wsPD-g~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~~  142 (696)
                      +.|.+.+++|+|| +++||+++.||+|+|||+.........                  ....+.++...|.+  +.+++
T Consensus        37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~------------------~~~~l~~h~~~V~~~~~s~dg   98 (340)
T 4aow_A           37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI------------------PQRALRGHSHFVSDVVISSDG   98 (340)
T ss_dssp             CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE------------------EEEEECCCSSCEEEEEECTTS
T ss_pred             ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce------------------eeEEEeCCCCCEEEEEECCCC
Confidence            4588999999998 689999999999999999754321100                  00112334444544  56788


Q ss_pred             CeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcce
Q 005459          143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL  222 (696)
Q Consensus       143 ~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  222 (696)
                      +.+++++.||.++.+..........                                    ...+...+..         
T Consensus        99 ~~l~s~~~d~~i~~~~~~~~~~~~~------------------------------------~~~~~~~~~~---------  133 (340)
T 4aow_A           99 QFALSGSWDGTLRLWDLTTGTTTRR------------------------------------FVGHTKDVLS---------  133 (340)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEE------------------------------------EECCSSCEEE---------
T ss_pred             CEEEEEcccccceEEeecccceeee------------------------------------ecCCCCceeE---------
Confidence            9999999999998865443221111                                    0001111222         


Q ss_pred             EEEEEeCCcEEEEeeccCCceeeeeeeccee----cCCCCeEE-EEEcCC--CcEEEEEecCCeEEEEEccCCCceeeEE
Q 005459          223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAPE--QQILAVGTRRGVVELYDLAESASLIRTV  295 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~-v~~sp~--~~~la~g~~dg~v~vw~~~~~~~~~~~~  295 (696)
                       ..++++++.+++++.|+.+++|+.......    .+|.+.+. ++|+++  ..++++++.|++|++||+.+ .+.+..+
T Consensus       134 -~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~-~~~~~~~  211 (340)
T 4aow_A          134 -VAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN-CKLKTNH  211 (340)
T ss_dssp             -EEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-TEEEEEE
T ss_pred             -EEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC-CceeeEe
Confidence             346788899999999999999997543322    56777777 889886  46889999999999999998 7788888


Q ss_pred             eeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--
Q 005459          296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--  373 (696)
Q Consensus       296 ~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--  373 (696)
                      .+        |.++|++++|+|||++|++|+.|+.|++||+...+.+..+..+  ..+.++.|+|++    ..++++.  
T Consensus       212 ~~--------h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~----~~~~~~~d~  277 (340)
T 4aow_A          212 IG--------HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNR----YWLCAATGP  277 (340)
T ss_dssp             CC--------CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEEECSSS----SEEEEEETT
T ss_pred             cC--------CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeeecCCCC----ceeeccCCC
Confidence            87        9999999999999999999999999999999999998888765  468888888875    4444333  


Q ss_pred             eeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC
Q 005459          374 SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW  453 (696)
Q Consensus       374 ~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  453 (696)
                      .+++|+.+++.++.....+.                                                  ......+|..
T Consensus       278 ~i~iwd~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~h~~  307 (340)
T 4aow_A          278 SIKIWDLEGKIIVDELKQEV--------------------------------------------------ISTSSKAEPP  307 (340)
T ss_dssp             EEEEEETTTTEEEEEECCC---------------------------------------------------------CCCC
T ss_pred             EEEEEECCCCeEEEeccccc--------------------------------------------------eeeeccCCCC
Confidence            67777776665544432210                                                  1223446788


Q ss_pred             ceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       454 ~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                      +|.+++|+|||++||+|+.||.| +||+++|.
T Consensus       308 ~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          308 QCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            99999999999999999999999 99999984

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.97  E-value=8.5e-30  Score=269.07  Aligned_cols=273  Identities=10%  Similarity=0.133  Sum_probs=218.5

Q ss_pred             ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459          253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL  331 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v  331 (696)
                      +.+|.+.+. ++|+|++++||+|+.||+|++||+.+ +..+..+..        |.+.|.+++|+|||++||+|+.|+.+
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~-~~~~~~~~~--------~~~~v~~~~~s~~~~~l~s~~~d~~v  121 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT-TNKVHAIPL--------RSSWVMTCAYAPSGNYVACGGLDNIC  121 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT-CCEEEEEEC--------SSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-CCcceEeec--------CCccEEEEEECCCCCEEEEEeCCCeE
Confidence            468988888 99999999999999999999999988 777888888        99999999999999999999999999


Q ss_pred             EEEEccCC----eeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEe--c-
Q 005459          332 TVWSVSGC----RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFS--F-  401 (696)
Q Consensus       332 ~vW~~~~~----~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~--~-  401 (696)
                      ++|++.+.    .....+.+| ...|.++.|+|++    . +++++   ++++|+..+++....+.+|...|..+.  + 
T Consensus       122 ~iw~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~----~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~  195 (340)
T 1got_B          122 SIYNLKTREGNVRVSRELAGH-TGYLSCCRFLDDN----Q-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD  195 (340)
T ss_dssp             EEEETTTCSBSCEEEEEEECC-SSCEEEEEEEETT----E-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             EEEECccCCCcceeEEEecCC-CccEEEEEECCCC----c-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCC
Confidence            99999764    456677777 7789999999886    4 55555   899999999999999999999985554  4 


Q ss_pred             ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459          402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       402 ~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~  480 (696)
                      ++.+++++.|+++++|++..+..                    ...+.+|..+|.+++|+|+|++||+|+.||.+ +||+
T Consensus       196 ~~~l~sg~~d~~v~~wd~~~~~~--------------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~  255 (340)
T 1got_B          196 TRLFVSGACDASAKLWDVREGMC--------------------RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL  255 (340)
T ss_dssp             SSEEEEEETTSCEEEEETTTCSE--------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCEEEEEeCCCcEEEEECCCCee--------------------EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence            78899999999999999876543                    45677899999999999999999999999999 9999


Q ss_pred             cCCceE-ecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCcccee--EEeecCCccEEEEccCCE
Q 005459          481 RQKKWR-VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLL--CRKSLLAKPIVMDVYEDY  555 (696)
Q Consensus       481 ~sg~w~-~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~--~~~~~~~~~l~~~~~~~~  555 (696)
                      .+++-. .+...  .....+..++|.  +.+++++     +.+..|++|+.........+  |...+.  -+.+++++.+
T Consensus       256 ~~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~g-----~~d~~i~vwd~~~~~~~~~~~~h~~~v~--~~~~s~dg~~  326 (340)
T 1got_B          256 RADQELMTYSHD--NIICGITSVSFSKSGRLLLAG-----YDDFNCNVWDALKADRAGVLAGHDNRVS--CLGVTDDGMA  326 (340)
T ss_dssp             TTTEEEEEECCT--TCCSCEEEEEECTTSSEEEEE-----ETTSEEEEEETTTCCEEEEEECCSSCEE--EEEECTTSSC
T ss_pred             CCCcEEEEEccC--CcccceEEEEECCCCCEEEEE-----CCCCeEEEEEcccCcEeeEeecCCCcEE--EEEEcCCCCE
Confidence            887532 22211  111236778886  4566665     34478999997522221112  222222  2566788889


Q ss_pred             EEEEEcCceEEEEE
Q 005459          556 ILVTYRPFDVHIFH  569 (696)
Q Consensus       556 llv~~~d~~~~l~~  569 (696)
                      |++++.|+.++||+
T Consensus       327 l~s~s~D~~i~iWd  340 (340)
T 1got_B          327 VATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEEETTSCEEEEC
T ss_pred             EEEEcCCccEEecC
Confidence            99999999999994

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=2e-29  Score=271.92  Aligned_cols=224  Identities=16%  Similarity=0.197  Sum_probs=189.0

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      +.|+|||+.+++++.|+++++||....+.   +.+|...+. ++|+|++++|++|+.||+|++||+++ ++....+.   
T Consensus       129 v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~---  204 (393)
T 1erj_A          129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-GQCSLTLS---  204 (393)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEE---
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC-CeeEEEEE---
Confidence            34789999999999999999999876544   368988887 99999999999999999999999987 66665554   


Q ss_pred             CCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEe-------ecccccceecccccCCCCCCccceec
Q 005459          300 WGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTI-------RQISLSSISSPIVKPNQDCKYEPLMS  371 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l-------~~~~~~~v~~~~~sp~~~~~~~~l~s  371 (696)
                            +...|.+++|+| ||++|++|+.|++|++||+.++.++..+       .+| ...|.+++|+|++    +.+++
T Consensus       205 ------~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~g----~~l~s  273 (393)
T 1erj_A          205 ------IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH-KDSVYSVVFTRDG----QSVVS  273 (393)
T ss_dssp             ------CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC-SSCEEEEEECTTS----SEEEE
T ss_pred             ------cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCC-CCCEEEEEECCCC----CEEEE
Confidence                  467799999999 9999999999999999999998887777       345 6789999999998    88898


Q ss_pred             ce---eeEEEcCCC------------ceEEEEecCCcceEEEEe--c-ceeeeeccCCCCceeeeeeecCCeEEEEecCC
Q 005459          372 GT---SMMQWDEYG------------YRLYAIEEGSSERVLIFS--F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED  433 (696)
Q Consensus       372 g~---~~~~W~~~~------------~~l~~~~~~~~~~v~~~~--~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~  433 (696)
                      |+   ++++|+...            +.+.....+|...|..+.  + ++.+++++.|+++++|++..+..         
T Consensus       274 ~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~---------  344 (393)
T 1erj_A          274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP---------  344 (393)
T ss_dssp             EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE---------
T ss_pred             EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE---------
Confidence            87   899999865            334556678888885544  4 78899999999999999876654         


Q ss_pred             CCcceeEEeecCeeeecCCCceEEEEEcC------CCCEEEEEeCCccE-EEEccC
Q 005459          434 TDELKILHLNLPVSYISQNWPVQHVAASK------DGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       434 ~~~~~w~~~~~~~~~~~~~~~I~~va~s~------dG~~la~ag~dG~i-~w~~~s  482 (696)
                                 ...+.+|..+|.+++|++      ++++||+||.||.+ +|++..
T Consensus       345 -----------~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          345 -----------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             -----------EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             -----------EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence                       346778999999999986      78999999999999 999764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=1.5e-29  Score=298.47  Aligned_cols=401  Identities=13%  Similarity=0.156  Sum_probs=285.1

Q ss_pred             cccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCCe
Q 005459           67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKH  144 (696)
Q Consensus        67 ~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~~  144 (696)
                      .+.+.+++|+|||++||+++.+|.|++||+..+.....                       +..+...|.  +++++++.
T Consensus        13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~-----------------------~~~~~~~v~~~~~s~~~~~   69 (814)
T 3mkq_A           13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS-----------------------IQVTETPVRAGKFIARKNW   69 (814)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE-----------------------EECCSSCEEEEEEEGGGTE
T ss_pred             CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE-----------------------EecCCCcEEEEEEeCCCCE
Confidence            46789999999999999999999999999864321111                       112233343  45778899


Q ss_pred             EEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEE
Q 005459          145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF  224 (696)
Q Consensus       145 llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  224 (696)
                      |++++.+|.|++|+++......                                    .+..+...|.++.         
T Consensus        70 l~~~~~dg~i~vw~~~~~~~~~------------------------------------~~~~~~~~v~~~~---------  104 (814)
T 3mkq_A           70 IIVGSDDFRIRVFNYNTGEKVV------------------------------------DFEAHPDYIRSIA---------  104 (814)
T ss_dssp             EEEEETTSEEEEEETTTCCEEE------------------------------------EEECCSSCEEEEE---------
T ss_pred             EEEEeCCCeEEEEECCCCcEEE------------------------------------EEecCCCCEEEEE---------
Confidence            9999999999997665321110                                    1112344566655         


Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeecc----eecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeec
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKID----KELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLY  298 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~  298 (696)
                       ++|||+.+++++.|+++++|+.....    ...+|...+. ++|+| ++++|++|+.||+|++||+.. ......+.. 
T Consensus       105 -~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~-~~~~~~~~~-  181 (814)
T 3mkq_A          105 -VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTT-  181 (814)
T ss_dssp             -ECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC-SSCSEEEEC-
T ss_pred             -EeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcceeEEec-
Confidence             78899999999999999999987542    2357887776 99999 899999999999999999987 566666665 


Q ss_pred             cCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---
Q 005459          299 DWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---  373 (696)
Q Consensus       299 ~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---  373 (696)
                            .|.+.|.+++|+|  ||..|++|+.||.|++||+.++..+.++.+| ...|.+++|+|++    ..+++|+   
T Consensus       182 ------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~l~~~~~dg  250 (814)
T 3mkq_A          182 ------GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH-MSNVSFAVFHPTL----PIIISGSEDG  250 (814)
T ss_dssp             ------CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSS----SEEEEEETTS
T ss_pred             ------CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCC----CEEEEEeCCC
Confidence                  2558999999999  9999999999999999999999999999888 6789999999998    7888876   


Q ss_pred             eeEEEcCCCceEEEEecCCcceEEEEec---cee-eeeccCCCCceeeeeeecCCe--------EEEEecCCCCcc----
Q 005459          374 SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKC-CLNRGVSGMTYARQVIYGEDR--------LLVVQSEDTDEL----  437 (696)
Q Consensus       374 ~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~-~~s~~~d~~~~~w~~~~~~~~--------~~~~~~~~~~~~----  437 (696)
                      .+.+|+..++++......|...+..+.+   ++. +++.+.++.+.+|++......        .+...+.+....    
T Consensus       251 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  330 (814)
T 3mkq_A          251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFT  330 (814)
T ss_dssp             CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEE
T ss_pred             eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeee
Confidence            7999999999999998888888855554   343 355566777777776544322        222222111100    


Q ss_pred             -----eeE-----Eee-cCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee
Q 005459          438 -----KIL-----HLN-LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL  505 (696)
Q Consensus       438 -----~w~-----~~~-~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~  505 (696)
                           .|.     ... .......+..++++++|+|||+++|+++ +|.+ +|++...+-+        ..-.+..++|.
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~--------~~~~i~~~~~s  401 (814)
T 3mkq_A          331 AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK--------AFGKCQDFVWG  401 (814)
T ss_dssp             EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE--------EEEECSEEEEC
T ss_pred             eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc--------CCCceEEEEEe
Confidence                 010     000 1122334566789999999999999999 7878 9997543211        11235688997


Q ss_pred             --CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEccC---CEEEEEEcCceEEEEEEE
Q 005459          506 --GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYE---DYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       506 --~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~---~~llv~~~d~~~~l~~~~  571 (696)
                        ++.++++     +.+..+++|..-      ..|...+.  .+.+++.+   ..|++++.|+.+++|++.
T Consensus       402 pdg~~la~~-----~~~g~v~l~~~~------~~~~~~v~--~~~~s~dg~~~~~l~~~~~d~~v~~~d~~  459 (814)
T 3mkq_A          402 PDSNSYALI-----DETGQIKYYKNF------KEVTSWSV--PMHSAIDRLFSGALLGVKSDGFVYFFDWD  459 (814)
T ss_dssp             TTSSCEEEE-----CTTCCEEEEETT------EECTTCCC--CCSSCCCEEECSSSEEEEETTEEEEECTT
T ss_pred             CCCCeEEEE-----eCCCcEEEEECC------CCccceEE--cCCcCccceecceEEEEecCCEEEEEECC
Confidence              4556665     345679999642      11111111  23445554   578888889999999764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.9e-30  Score=267.43  Aligned_cols=281  Identities=16%  Similarity=0.271  Sum_probs=209.6

Q ss_pred             CCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc-----ee-cC-CCCeEE-EEEcCCCcEEEEEecC
Q 005459          206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID-----KE-LG-SGDAVC-ASIAPEQQILAVGTRR  277 (696)
Q Consensus       206 ~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~-----~~-~~-~~~~v~-v~~sp~~~~la~g~~d  277 (696)
                      .+...|.++.          ++++  ++++++.|+++++|+.....     .+ .+ |.+.+. ++|+|++++||+|+.|
T Consensus        12 ~h~~~v~~~~----------~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D   79 (330)
T 2hes_X           12 LYKEKIWSFD----------FSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD   79 (330)
T ss_dssp             CCSSCEEEEE----------EETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred             cCCCceeeec----------cCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence            4555666655          5555  88888999999999986531     12 34 888887 9999999999999999


Q ss_pred             CeEEEEEccCC------CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc-C---CeeEEEeec
Q 005459          278 GVVELYDLAES------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-G---CRLMSTIRQ  347 (696)
Q Consensus       278 g~v~vw~~~~~------~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~-~---~~~~~~l~~  347 (696)
                      |+|++|++...      ...+..+.+        |.++|.+++|+|||++||+|+.|++|++||+. .   .+++.++.+
T Consensus        80 ~~v~iw~~~~~~~~~~~~~~~~~~~~--------h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~  151 (330)
T 2hes_X           80 STVSIWAKEESADRTFEMDLLAIIEG--------HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE  151 (330)
T ss_dssp             SCEEEEEC-------CCCEEEEEEC------------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC
T ss_pred             CcEEEEEcccCcCccccceeEEEEcC--------CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc
Confidence            99999998531      234556667        99999999999999999999999999999994 2   256778888


Q ss_pred             ccccceecccccCCCCCCccceecce---eeEEEcCCCc--eEEEEecCCcceEEEEec-----ceeeeeccCCCCceee
Q 005459          348 ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--RLYAIEEGSSERVLIFSF-----GKCCLNRGVSGMTYAR  417 (696)
Q Consensus       348 ~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~--~l~~~~~~~~~~v~~~~~-----~~~~~s~~~d~~~~~w  417 (696)
                      | ...|.+++|+|++    ..+++|+   ++++|+..++  +++..+.+|...|..+.|     +..+++++.|+++++|
T Consensus       152 h-~~~v~~v~~~p~~----~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw  226 (330)
T 2hes_X          152 H-SQDVKHVIWHPSE----ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW  226 (330)
T ss_dssp             C-SSCEEEEEECSSS----SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred             C-CCceEEEEECCCC----CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence            8 7789999999998    8899887   8999998665  678888899999966555     3468999999999999


Q ss_pred             eeeecCCeEEEEecCCCCcceeEEeecCeeeec-CCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCcccee
Q 005459          418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQ  495 (696)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~  495 (696)
                      ++..+...         ....|.   ....+.+ |..+|++++|++++ +||+++.||.+ +|+..+++|+.+......+
T Consensus       227 ~~~~~~~~---------~~~~~~---~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h  293 (330)
T 2hes_X          227 KYMGDDED---------DQQEWV---CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH  293 (330)
T ss_dssp             EEEEECTT---------SCEEEE---EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT
T ss_pred             EecCCCcc---------ccceeE---EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc
Confidence            98765320         001111   1223333 88999999999766 89999999999 9999999886543221112


Q ss_pred             e-eEEEeEeeeC----cEEEEEEeecCCCeEEEEEeeCC
Q 005459          496 K-IQSKGLLWLG----KIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       496 ~-~~v~~~~w~~----~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      . ..+..++|.+    +.|+++     +.+..||+|+.+
T Consensus       294 ~~~~v~~v~~~~~~~~~~las~-----s~Dg~v~~W~~~  327 (330)
T 2hes_X          294 GVYEINVVKWLELNGKTILATG-----GDDGIVNFWSLE  327 (330)
T ss_dssp             TTSCEEEEEEC-----CCEEEE-----ETTSEEEEEEC-
T ss_pred             ccceEEEEEEecCCCceEEEEe-----cCCCcEEEEEec
Confidence            2 2477788864    356666     345789999864

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.97  E-value=2.5e-29  Score=266.07  Aligned_cols=284  Identities=15%  Similarity=0.182  Sum_probs=214.9

Q ss_pred             EEEEEeCCcEEEEeeccCCceeeeeeecce------ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC-ceeeE
Q 005459          223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDK------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA-SLIRT  294 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~------~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~-~~~~~  294 (696)
                      .++++|||+++++++.|+++++|+......      ..+|.+.+. ++|+|++++||+|+.|++|++|+++... +.+.+
T Consensus        21 ~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~  100 (345)
T 3fm0_A           21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTT  100 (345)
T ss_dssp             EEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEE
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEE
Confidence            355889999999999999999999875431      157888887 9999999999999999999999987622 35667


Q ss_pred             EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC---eeEEEeecccccceecccccCCCCCCccceec
Q 005459          295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLSSISSPIVKPNQDCKYEPLMS  371 (696)
Q Consensus       295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~---~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~s  371 (696)
                      +.+        |.++|.+++|+|||++||+|+.|++|++||+..+   .++..+.+| ...|.+++|+|++    +.+++
T Consensus       101 ~~~--------h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~----~~l~s  167 (345)
T 3fm0_A          101 LEG--------HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH-TQDVKHVVWHPSQ----ELLAS  167 (345)
T ss_dssp             ECC--------CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC-CSCEEEEEECSSS----SCEEE
T ss_pred             ccC--------CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc-CCCeEEEEECCCC----CEEEE
Confidence            777        9999999999999999999999999999999765   345667777 6789999999998    88988


Q ss_pred             ce---eeEEEcCCCce--EEEEecCCcceEEE--Eec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEee
Q 005459          372 GT---SMMQWDEYGYR--LYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN  443 (696)
Q Consensus       372 g~---~~~~W~~~~~~--l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~  443 (696)
                      |+   ++++|+.+.++  +...+.+|...|..  |++ ++.+++++.|+++++|+.........+....  ....|.   
T Consensus       168 ~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~--~~~~~~---  242 (345)
T 3fm0_A          168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSG--SDPSWK---  242 (345)
T ss_dssp             EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC-----CEEE---
T ss_pred             EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeec--cCCccc---
Confidence            87   89999988765  44677899999954  455 8899999999999999975443210000000  001121   


Q ss_pred             cCeeeec-CCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE---ec---CCccceeeeEEEeEeeeCc---EEEEE
Q 005459          444 LPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR---VF---GDITQEQKIQSKGLLWLGK---IIVVC  512 (696)
Q Consensus       444 ~~~~~~~-~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~---~f---~~~~~e~~~~v~~~~w~~~---~lv~~  512 (696)
                      +...+.+ |..+|++++|+|++.+||+++.|+.+ +|+...+.-.   .+   ......+.-.|..++|.++   .++++
T Consensus       243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~  322 (345)
T 3fm0_A          243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC  322 (345)
T ss_dssp             EEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEE
T ss_pred             eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEc
Confidence            1223333 88899999999999999999999999 9998765310   00   0000112234888999854   45555


Q ss_pred             EeecCCCeEEEEEeeCC
Q 005459          513 NYIDSSNTYELLFYPRY  529 (696)
Q Consensus       513 ~~~~~~~~~~lr~y~~~  529 (696)
                           +.+..||+|+..
T Consensus       323 -----s~Dg~v~~W~~~  334 (345)
T 3fm0_A          323 -----SDDGEVAFWKYQ  334 (345)
T ss_dssp             -----ETTSCEEEEEEC
T ss_pred             -----CCCCcEEEEEec
Confidence                 345789999875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=6.6e-30  Score=272.75  Aligned_cols=302  Identities=12%  Similarity=0.098  Sum_probs=204.1

Q ss_pred             cccEEEEcCCCcEEEEEec-------CcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeC
Q 005459           69 ENLQAVWSPDTKLIAVVTS-------SLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD  141 (696)
Q Consensus        69 ~~~~v~wsPDg~~lav~t~-------dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~  141 (696)
                      ++++++|+|||++||+++.       ++.|++|+++........             .+.......+..++..+.+++++
T Consensus        16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~v~s~~~~   82 (365)
T 4h5i_A           16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE-------------QFHILSEFALEDNDDSPTAIDAS   82 (365)
T ss_dssp             CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH-------------HEEEEEEEECCTTSCCCCEEEEE
T ss_pred             CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee-------------eeeeeeEEEccCCCCceEEEEeC
Confidence            6899999999999999864       346999999755432110             00111122244555567788888


Q ss_pred             CCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcc
Q 005459          142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR  221 (696)
Q Consensus       142 ~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  221 (696)
                      ++.++++..++...+  |.+.....                                            ++-..      
T Consensus        83 ~~~~~~g~~~~~~~l--~s~~~d~~--------------------------------------------~r~~~------  110 (365)
T 4h5i_A           83 KGIILVGCNENSTKI--TQGKGNKH--------------------------------------------LRKFK------  110 (365)
T ss_dssp             TTEEEEECCCCHHHH--HHTSCCCC--------------------------------------------EEEEE------
T ss_pred             CCEEEEEECCCccEE--EEecCCCc--------------------------------------------EEEEE------
Confidence            888888876654433  22211110                                            11101      


Q ss_pred             eEEEEEeCCcEEEEeeccCCceeeeeeecceecCCCCeEE-EEEcCCCcEEEEEe--cCCeEEEEEccCCCceeeEEeec
Q 005459          222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGT--RRGVVELYDLAESASLIRTVSLY  298 (696)
Q Consensus       222 ~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~-v~~sp~~~~la~g~--~dg~v~vw~~~~~~~~~~~~~~~  298 (696)
                          +......         ++.+..........+++.+. ++|||||+++|+|+  .|++|+|||+.+ .+.+.++.  
T Consensus       111 ----~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~-~~~~~~~~--  174 (365)
T 4h5i_A          111 ----YDKVNDQ---------LEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD-LTEKFEIE--  174 (365)
T ss_dssp             ----EETTTTE---------EEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT-TEEEEEEE--
T ss_pred             ----ecCCCce---------EEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC-CcEEEEeC--
Confidence                0010000         01111111111123455566 99999999987654  789999999988 66666653  


Q ss_pred             cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeE-EEeecccccceecccccCCCCCCccceecce----
Q 005459          299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM-STIRQISLSSISSPIVKPNQDCKYEPLMSGT----  373 (696)
Q Consensus       299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~-~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----  373 (696)
                             |.+.|.+|+|||||++|++++.| ++.+|+...+... ......+...|.+++|+|++    ..+++++    
T Consensus       175 -------~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg----~~l~~~s~d~~  242 (365)
T 4h5i_A          175 -------TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADD----TVLIAASLKKG  242 (365)
T ss_dssp             -------CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT----EEEEEEEESSS
T ss_pred             -------CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC----CEEEEEecCCc
Confidence                   67889999999999999999865 5556655554443 33333336789999999998    7777665    


Q ss_pred             ---eeEEEcCCCceE----EEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEee
Q 005459          374 ---SMMQWDEYGYRL----YAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN  443 (696)
Q Consensus       374 ---~~~~W~~~~~~l----~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~  443 (696)
                         .+..|+......    .....+|...|  ++|++ ++.+++++.|+++++||+.+++.                   
T Consensus       243 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~-------------------  303 (365)
T 4h5i_A          243 KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM-------------------  303 (365)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE-------------------
T ss_pred             ceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE-------------------
Confidence               467788765543    23456788888  45566 89999999999999999866543                   


Q ss_pred             cCeee-ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC
Q 005459          444 LPVSY-ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK  483 (696)
Q Consensus       444 ~~~~~-~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg  483 (696)
                       ...+ .+|..+|++++|||||++||+||.|+++ +|++..+
T Consensus       304 -~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          304 -SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             -EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             -EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence             3343 5899999999999999999999999999 9998654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=5.6e-29  Score=260.40  Aligned_cols=272  Identities=16%  Similarity=0.167  Sum_probs=213.2

Q ss_pred             ecCCCCeEE-EEEcCCC-cEEEEEecCCeEEEEEccCC----CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE
Q 005459          253 ELGSGDAVC-ASIAPEQ-QILAVGTRRGVVELYDLAES----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW  326 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp~~-~~la~g~~dg~v~vw~~~~~----~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~  326 (696)
                      +.+|.+.|. ++|+|++ ++||+|+.||+|++|++...    +..++.+.+        |.+.|.+++|+|||++|++|+
T Consensus        13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~--------h~~~v~~~~~s~dg~~l~s~s   84 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG--------HSHIVQDCTLTADGAYALSAS   84 (319)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC--------CSSCEEEEEECTTSSEEEEEE
T ss_pred             EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeC--------CcccEEEEEECCCCCEEEEEe
Confidence            468999988 9999965 89999999999999998742    134566777        999999999999999999999


Q ss_pred             cCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec--
Q 005459          327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--  401 (696)
Q Consensus       327 ~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~--  401 (696)
                      .|++|++||+.+++++.++.+| ...|.+++|+|++    ..+++|+   ++++|+..+. .+....+|...+..+.+  
T Consensus        85 ~D~~v~~wd~~~~~~~~~~~~h-~~~v~~~~~~~~~----~~l~s~s~D~~i~vwd~~~~-~~~~~~~h~~~v~~~~~~~  158 (319)
T 3frx_A           85 WDKTLRLWDVATGETYQRFVGH-KSDVMSVDIDKKA----SMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVP  158 (319)
T ss_dssp             TTSEEEEEETTTTEEEEEEECC-SSCEEEEEECTTS----CEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECC
T ss_pred             CCCEEEEEECCCCCeeEEEccC-CCcEEEEEEcCCC----CEEEEEeCCCeEEEEECCCC-eEEEEeccCCcEEEEEEcc
Confidence            9999999999999999999998 7789999999998    8899887   8999999754 55667788888855544  


Q ss_pred             -c------eeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCc
Q 005459          402 -G------KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG  474 (696)
Q Consensus       402 -~------~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG  474 (696)
                       .      ..+++++.|+++++|++.+...                    ...+.+|..+|.+++|+|||++||+|+.||
T Consensus       159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------------------~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg  218 (319)
T 3frx_A          159 NEKADDDSVTIISAGNDKMVKAWNLNQFQI--------------------EADFIGHNSNINTLTASPDGTLIASAGKDG  218 (319)
T ss_dssp             C------CCEEEEEETTSCEEEEETTTTEE--------------------EEEECCCCSCEEEEEECTTSSEEEEEETTC
T ss_pred             CCCCCCCccEEEEEeCCCEEEEEECCcchh--------------------heeecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence             2      2689999999999999765432                    456779999999999999999999999999


Q ss_pred             cE-EEEccCCceEecCCccceeeeEEEeEeeeCc--EEEEEEeecCCCeEEEEEeeCCCCCccceeEEee---------c
Q 005459          475 LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKS---------L  542 (696)
Q Consensus       475 ~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~--~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~---------~  542 (696)
                      .+ +||+.+++-....  ...  -.+..++|.++  .++++  .  .  ..+++|+.+   .........         .
T Consensus       219 ~i~iwd~~~~~~~~~~--~~~--~~v~~~~~sp~~~~la~~--~--~--~~i~v~~~~---~~~~~~~~~~~~~~~~~~~  285 (319)
T 3frx_A          219 EIMLWNLAAKKAMYTL--SAQ--DEVFSLAFSPNRYWLAAA--T--A--TGIKVFSLD---PQYLVDDLRPEFAGYSKAA  285 (319)
T ss_dssp             EEEEEETTTTEEEEEE--ECC--SCEEEEEECSSSSEEEEE--E--T--TEEEEEEET---TEEEEEEECCCCTTCCGGG
T ss_pred             eEEEEECCCCcEEEEe--cCC--CcEEEEEEcCCCCEEEEE--c--C--CCcEEEEeC---cCeeeeccCccccccccCc
Confidence            99 9999988632211  111  13678888754  44433  2  1  348888764   111111110         1


Q ss_pred             CCc--cEEEEccCCEEEEEEcCceEEEEEEE
Q 005459          543 LAK--PIVMDVYEDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       543 ~~~--~l~~~~~~~~llv~~~d~~~~l~~~~  571 (696)
                      ...  -+.+++++++|++++.|+.+++|++.
T Consensus       286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence            111  26778999999999999999999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=6.1e-30  Score=274.59  Aligned_cols=280  Identities=13%  Similarity=0.180  Sum_probs=219.4

Q ss_pred             ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459          253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL  331 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v  331 (696)
                      +.+|.+.|. ++|+|++++||+|+.||+|++||+.+ ++....+..        |...|.+++|+|||++||+|+.|+++
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~-~~~~~~~~~--------h~~~v~~~~~s~~g~~las~~~d~~v  132 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALT-SQKTHAIKL--------HCPWVMECAFAPNGQSVACGGLDSAC  132 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTT-TEEEEEEEC--------CCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CccceEEec--------CCCCEEEEEECCCCCEEEEeeCCCcE
Confidence            478998888 99999999999999999999999988 788888888        99999999999999999999999999


Q ss_pred             EEEEccCCe-------eEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEe-----cCCcceE
Q 005459          332 TVWSVSGCR-------LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE-----EGSSERV  396 (696)
Q Consensus       332 ~vW~~~~~~-------~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~-----~~~~~~v  396 (696)
                      ++|++....       ....+.+| ...+.++.|.|++.   ..+++|+   ++++|+..+++.+...     .+|...+
T Consensus       133 ~iw~~~~~~~~~~~~~~~~~~~gh-~~~v~~~~~~~~~~---~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v  208 (380)
T 3iz6_a          133 SIFNLSSQADRDGNMPVSRVLTGH-KGYASSCQYVPDQE---TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV  208 (380)
T ss_dssp             EEEECCCCSSCCCSSTTCCBCCCC-SSCCCCCBCCSSSS---SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE
T ss_pred             EEEECCCCccccCCccceeeccCC-CcceEEEEEecCCC---CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe
Confidence            999986432       34456677 77899999999752   4577776   8999999999888776     5788888


Q ss_pred             EEEec----ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC
Q 005459          397 LIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL  472 (696)
Q Consensus       397 ~~~~~----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~  472 (696)
                      ..+.+    ++.+++++.|+++++||+.....                   ....+.+|..+|.+++|+|||++||+|+.
T Consensus       209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~  269 (380)
T 3iz6_a          209 LSLSINSLNANMFISGSCDTTVRLWDLRITSR-------------------AVRTYHGHEGDINSVKFFPDGQRFGTGSD  269 (380)
T ss_dssp             EEEEECSSSCCEEEEEETTSCEEEEETTTTCC-------------------CCEEECCCSSCCCEEEECTTSSEEEEECS
T ss_pred             EEEEeecCCCCEEEEEECCCeEEEEECCCCCc-------------------ceEEECCcCCCeEEEEEecCCCeEEEEcC
Confidence            65544    67899999999999999864433                   24577899999999999999999999999


Q ss_pred             CccE-EEEccCCceE-ecCCccc--eeee-EEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCccc------eeEE
Q 005459          473 HGLI-LYDIRQKKWR-VFGDITQ--EQKI-QSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSS------LLCR  539 (696)
Q Consensus       473 dG~i-~w~~~sg~w~-~f~~~~~--e~~~-~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~------~~~~  539 (696)
                      ||.+ +||+.+++.. .+.....  +... .+..++|.  +..++++     ..+..|++|+...-....      ..|.
T Consensus       270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-----~~dg~i~vwd~~~~~~~~~~~~~~~~h~  344 (380)
T 3iz6_a          270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAG-----YSNGDCYVWDTLLAEMVLNLGTLQNSHE  344 (380)
T ss_dssp             SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEE-----CTTSCEEEEETTTCCEEEEECCSCSSCC
T ss_pred             CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEE-----ECCCCEEEEECCCCceEEEEecccCCCC
Confidence            9999 9999998643 2222111  1111 25577885  5566665     345789999874111100      1233


Q ss_pred             eecCCccEEEEccCCEEEEEEcCceEEEEEEE
Q 005459          540 KSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       540 ~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~  571 (696)
                      ..+.+  +.+++++.+|++++.|+.+++|.+.
T Consensus       345 ~~v~~--l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          345 GRISC--LGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             CCCCE--EEECSSSSEEEEECTTSCEEEEECC
T ss_pred             CceEE--EEECCCCCEEEEeeCCCCEEEEecC
Confidence            33333  7888999999999999999999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.97  E-value=2.3e-29  Score=263.46  Aligned_cols=312  Identities=17%  Similarity=0.154  Sum_probs=236.1

Q ss_pred             ccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCCeE
Q 005459           68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHM  145 (696)
Q Consensus        68 G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~~l  145 (696)
                      +.+.+++|||||++++++..++.+..|.......                       ......+...|+  ++.++++.+
T Consensus        10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~h~~~v~~~~~~~~~~~l   66 (337)
T 1gxr_A           10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHAR-----------------------QINTLNHGEVVCAVTISNPTRHV   66 (337)
T ss_dssp             EECCEEEECSSSCEEECCCCTTSSSSTTCCSEEE-----------------------EEEEECCSSCCCEEEECSSSSEE
T ss_pred             CceeEEEECCCCCEEEeecCCCcEeccccCCccc-----------------------cceeccCCCceEEEEEecCCcEE
Confidence            5678999999999999988776543332210000                       000112233333  456677778


Q ss_pred             EEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEE
Q 005459          146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV  225 (696)
Q Consensus       146 lv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  225 (696)
                      ++++ +|.+++|+.+.......           +..                    .....+...|.++.          
T Consensus        67 ~~~~-dg~i~iw~~~~~~~~~~-----------~~~--------------------~~~~~~~~~v~~~~----------  104 (337)
T 1gxr_A           67 YTGG-KGCVKVWDISHPGNKSP-----------VSQ--------------------LDCLNRDNYIRSCK----------  104 (337)
T ss_dssp             EEEC-BSEEEEEETTSTTCCSC-----------SEE--------------------EECSCTTSBEEEEE----------
T ss_pred             EEcC-CCeEEEEECCCCCceee-----------eec--------------------ccccCCCCcEEEEE----------
Confidence            8777 99999876553221100           000                    01113445576655          


Q ss_pred             EEeCCcEEEEeeccCCceeeeeeecce-----ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      ++|||+.+++++.++++++|+...++.     ..+|...+. ++|+|++++|++|+.||.|++||+++ .+.+..+..  
T Consensus       105 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~-~~~~~~~~~--  181 (337)
T 1gxr_A          105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQG--  181 (337)
T ss_dssp             ECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECC--
T ss_pred             EcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-Cceeeeeec--
Confidence            778899999999999999999876541     256777776 99999999999999999999999988 777888877  


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM  376 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~  376 (696)
                            |.+.|.+++|+|||+.|++++.|+.|++||+.+++....+..  ...+.+++|+|++    +.++++.   .+.
T Consensus       182 ------~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~v~~~~~s~~~----~~l~~~~~~~~i~  249 (337)
T 1gxr_A          182 ------HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF--TSQIFSLGYCPTG----EWLAVGMESSNVE  249 (337)
T ss_dssp             ------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECTTS----SEEEEEETTSCEE
T ss_pred             ------ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC--CCceEEEEECCCC----CEEEEEcCCCcEE
Confidence                  999999999999999999999999999999999988877753  4669999999998    7787776   899


Q ss_pred             EEcCCCceEEEEecCCcceEE--EEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC
Q 005459          377 QWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW  453 (696)
Q Consensus       377 ~W~~~~~~l~~~~~~~~~~v~--~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  453 (696)
                      +|+..+.+.. ....|...+.  .+++ ++.+++++.|+.+++|++..++.                     .....|..
T Consensus       250 ~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~---------------------~~~~~~~~  307 (337)
T 1gxr_A          250 VLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS---------------------IFQSKESS  307 (337)
T ss_dssp             EEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---------------------EEEEECSS
T ss_pred             EEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE---------------------EEEecCCC
Confidence            9999988765 4557788884  4555 78899999999999999776553                     12345788


Q ss_pred             ceEEEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459          454 PVQHVAASKDGMFLAVAGLHGLI-LYDIR  481 (696)
Q Consensus       454 ~I~~va~s~dG~~la~ag~dG~i-~w~~~  481 (696)
                      +|.+++|+|||++|++++.||.+ +|++.
T Consensus       308 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          308 SVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             cEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            99999999999999999999999 99863

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=2.7e-29  Score=270.77  Aligned_cols=286  Identities=14%  Similarity=0.199  Sum_probs=209.3

Q ss_pred             CCceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHH------H------hhcccccEEEEcCCCcEEEEEec
Q 005459           20 SSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSES------V------QREGENLQAVWSPDTKLIAVVTS   87 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~s------l------~~~G~~~~v~wsPDg~~lav~t~   87 (696)
                      +...-++|||||++||++++++++||+.. .+..+..+......      +      .....+.+++|+|||++||+++.
T Consensus        65 ~~V~~v~fspdg~~la~g~~~~v~i~~~~-~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~  143 (393)
T 1erj_A           65 SVVCCVKFSNDGEYLATGCNKTTQVYRVS-DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE  143 (393)
T ss_dssp             SCCCEEEECTTSSEEEEECBSCEEEEETT-TCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred             CEEEEEEECCCCCEEEEEcCCcEEEEEec-CCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence            34566899999999999999999999995 55555444321110      0      01123678999999999999999


Q ss_pred             CcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccce
Q 005459           88 SLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAF  167 (696)
Q Consensus        88 dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~  167 (696)
                      ||.|++||+......                                                    ..  ..       
T Consensus       144 d~~i~iwd~~~~~~~----------------------------------------------------~~--~~-------  162 (393)
T 1erj_A          144 DRLIRIWDIENRKIV----------------------------------------------------MI--LQ-------  162 (393)
T ss_dssp             TSCEEEEETTTTEEE----------------------------------------------------EE--EC-------
T ss_pred             CCeEEEEECCCCcEE----------------------------------------------------EE--Ec-------
Confidence            999999997522100                                                    00  00       


Q ss_pred             eeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeee
Q 005459          168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF  247 (696)
Q Consensus       168 ~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~  247 (696)
                                                            .+...|.++.          ++|+|+.+++++.|+++++||.
T Consensus       163 --------------------------------------~h~~~v~~~~----------~~p~~~~l~s~s~d~~v~iwd~  194 (393)
T 1erj_A          163 --------------------------------------GHEQDIYSLD----------YFPSGDKLVSGSGDRTVRIWDL  194 (393)
T ss_dssp             --------------------------------------CCSSCEEEEE----------ECTTSSEEEEEETTSEEEEEET
T ss_pred             --------------------------------------cCCCCEEEEE----------EcCCCCEEEEecCCCcEEEEEC
Confidence                                                  0112244433          5667777777777777777776


Q ss_pred             eeccee--cCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEE
Q 005459          248 IKIDKE--LGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA  323 (696)
Q Consensus       248 ~~~~~~--~~~~~~v-~v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~la  323 (696)
                      ..++..  ..+.+.+ +++|+| ++++||+|+.||+|++||+.+ +..+..+.... ....+|.+.|.+++|+|||+.|+
T Consensus       195 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~-~~~~~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~  272 (393)
T 1erj_A          195 RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET-GFLVERLDSEN-ESGTGHKDSVYSVVFTRDGQSVV  272 (393)
T ss_dssp             TTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT-CCEEEEEC-------CCCSSCEEEEEECTTSSEEE
T ss_pred             CCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC-CcEEEeecccc-cCCCCCCCCEEEEEECCCCCEEE
Confidence            654432  2233444 499999 899999999999999999987 66665553210 01124999999999999999999


Q ss_pred             EEEcCCcEEEEEccC------------CeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEE
Q 005459          324 VGWKSRGLTVWSVSG------------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI  388 (696)
Q Consensus       324 sg~~Dg~v~vW~~~~------------~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~  388 (696)
                      +|+.|++|++||+..            +.+..++.+| ...|.+++|+|++    ..+++|+   .+++|+..+++.+..
T Consensus       273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~----~~l~sgs~D~~v~iwd~~~~~~~~~  347 (393)
T 1erj_A          273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVLSVATTQND----EYILSGSKDRGVLFWDKKSGNPLLM  347 (393)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEEECC-SSCEEEEEECGGG----CEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc-cCcEEEEEECCCC----CEEEEEeCCCeEEEEECCCCeEEEE
Confidence            999999999999865            3345667777 6789999999998    8899887   899999999999999


Q ss_pred             ecCCcceEEEEec---------ceeeeeccCCCCceeeeeeec
Q 005459          389 EEGSSERVLIFSF---------GKCCLNRGVSGMTYARQVIYG  422 (696)
Q Consensus       389 ~~~~~~~v~~~~~---------~~~~~s~~~d~~~~~w~~~~~  422 (696)
                      +.+|...|..+.+         ++.+++++.|+++++|++...
T Consensus       348 l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          348 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             ECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            9999999965543         467999999999999997643

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=2.6e-29  Score=267.04  Aligned_cols=274  Identities=13%  Similarity=0.163  Sum_probs=218.4

Q ss_pred             ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459          253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL  331 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v  331 (696)
                      +.+|.+.|. ++|+|++++||+|+.||+|++||..+ ....+.+..        |...|.+++|+|||+.||+|+.|+.+
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~-~~~~~~~~~--------~~~~v~~~~~sp~g~~lasg~~d~~i  130 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT-TNKEHAVTM--------PCTWVMACAYAPSGCAIACGGLDNKC  130 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC--------SSSCCCEEEECTTSSEEEEESTTSEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCC-CCcceEEec--------CCCCEEEEEECCCCCEEEEeeCCCCE
Confidence            468998887 99999999999999999999999887 677777777        88999999999999999999999999


Q ss_pred             EEEEccCC------eeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEE--e
Q 005459          332 TVWSVSGC------RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF--S  400 (696)
Q Consensus       332 ~vW~~~~~------~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~--~  400 (696)
                      ++|++...      .....+.+| ...|.+++|+|++    ..+++++   ++++|++++++++..+.+|...|.++  .
T Consensus       131 ~v~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~----~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~  205 (354)
T 2pbi_B          131 SVYPLTFDKNENMAAKKKSVAMH-TNYLSACSFTNSD----MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA  205 (354)
T ss_dssp             EEEECCCCTTCCSGGGCEEEEEC-SSCEEEEEECSSS----SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             EEEEEeccccccccccceeeecc-CCcEEEEEEeCCC----CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEE
Confidence            99998543      234566666 7789999999998    7888887   89999999999999999999888544  4


Q ss_pred             c---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-
Q 005459          401 F---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-  476 (696)
Q Consensus       401 ~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-  476 (696)
                      +   ++.+++++.|+++++||+.++..                    ...+.+|..+|.+++|+|+|++||+|+.||.+ 
T Consensus       206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~--------------------~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~  265 (354)
T 2pbi_B          206 PSETGNTFVSGGCDKKAMVWDMRSGQC--------------------VQAFETHESDVNSVRYYPSGDAFASGSDDATCR  265 (354)
T ss_dssp             CCSSCCEEEEEETTSCEEEEETTTCCE--------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             eCCCCCEEEEEeCCCeEEEEECCCCcE--------------------EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEE
Confidence            4   47899999999999999876654                    45677899999999999999999999999999 


Q ss_pred             EEEccCCceE-ecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCc--cceeEEeecCCccEEEEc
Q 005459          477 LYDIRQKKWR-VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQ--SSLLCRKSLLAKPIVMDV  551 (696)
Q Consensus       477 ~w~~~sg~w~-~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~--~~~~~~~~~~~~~l~~~~  551 (696)
                      +||+.+++-. .+...  ...+.+..++|.  +.+++++     ..+..|++|+..+-..  ....|...+.+  +.+++
T Consensus       266 lwd~~~~~~~~~~~~~--~~~~~~~~~~~s~~g~~l~~g-----~~d~~i~vwd~~~~~~~~~l~~h~~~v~~--l~~sp  336 (354)
T 2pbi_B          266 LYDLRADREVAIYSKE--SIIFGASSVDFSLSGRLLFAG-----YNDYTINVWDVLKGSRVSILFGHENRVST--LRVSP  336 (354)
T ss_dssp             EEETTTTEEEEEECCT--TCCSCEEEEEECTTSSEEEEE-----ETTSCEEEEETTTCSEEEEECCCSSCEEE--EEECT
T ss_pred             EEECCCCcEEEEEcCC--CcccceeEEEEeCCCCEEEEE-----ECCCcEEEEECCCCceEEEEECCCCcEEE--EEECC
Confidence            9999887532 22221  112346677776  4566665     2446899998742111  11122222222  67788


Q ss_pred             cCCEEEEEEcCceEEEEE
Q 005459          552 YEDYILVTYRPFDVHIFH  569 (696)
Q Consensus       552 ~~~~llv~~~d~~~~l~~  569 (696)
                      ++.+|++++.|+.+++|.
T Consensus       337 dg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          337 DGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEcCCCCEEecC
Confidence            999999999999999994

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.97  E-value=1.3e-29  Score=269.70  Aligned_cols=274  Identities=14%  Similarity=0.128  Sum_probs=201.8

Q ss_pred             CcccEEEEEEccCcceEEEEEeCCcEEEEeecc------CCceeeeeeecce-------ecCCCCeEE-EEEcCCCcEEE
Q 005459          207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK------KGLKLAEFIKIDK-------ELGSGDAVC-ASIAPEQQILA  272 (696)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d------~~~~~~~~~~~~~-------~~~~~~~v~-v~~sp~~~~la  272 (696)
                      +...|.+++          |+|||+++++++.|      +++++|+...+..       ..+|...+. ++|+|+++++ 
T Consensus        41 H~~~V~~v~----------fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-  109 (357)
T 4g56_B           41 MEVQIGAVR----------YRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-  109 (357)
T ss_dssp             CCSEEEEEE----------ECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-
T ss_pred             ccCCEEEEE----------ECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-
Confidence            455566654          88999999998874      4455555443321       135777776 9999998765 


Q ss_pred             EEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccc
Q 005459          273 VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS  352 (696)
Q Consensus       273 ~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~  352 (696)
                      +++.||+|+|||+.+ ++........    ..+|.+.|++|+|+|||++|++|+.|++|++||+.+++++..+.+| ...
T Consensus       110 ~~s~dg~v~lWd~~~-~~~~~~~~~~----~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h-~~~  183 (357)
T 4g56_B          110 VASDSGAVELWEILE-KESLLVNKFA----KYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH-SSE  183 (357)
T ss_dssp             EEETTSCEEEC---------CCCCEE----ECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSC
T ss_pred             EEECCCEEEEeeccc-cceeEEEeec----cCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC-CCC
Confidence            578899999999987 4332211110    0129999999999999999999999999999999999999999988 778


Q ss_pred             eecccccCCCCCCccceecce---eeEEEcCCCceEEEEec--CCcceE--EEEec--ceeeeeccCCCCceeeeeeecC
Q 005459          353 ISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE--GSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGE  423 (696)
Q Consensus       353 v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~--~~~~~v--~~~~~--~~~~~s~~~d~~~~~w~~~~~~  423 (696)
                      |.+++|+|++.   ..++++.   ++++|+.++++......  .+...+  +++++  ++.+++++.|+.+++|++..++
T Consensus       184 v~~v~~s~~~~---~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~  260 (357)
T 4g56_B          184 VNCVAACPGKD---TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD  260 (357)
T ss_dssp             EEEEEECTTCS---SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG
T ss_pred             EEEEEEccCCC---ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc
Confidence            99999999872   3566665   89999998877655443  345556  45555  4678899999999999987765


Q ss_pred             CeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC-CEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEe
Q 005459          424 DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKG  501 (696)
Q Consensus       424 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG-~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~  501 (696)
                      .                    ...+.+|..+|++++|+|+| ++||+|+.||.+ +||+++++...+.  .+  .-.|.+
T Consensus       261 ~--------------------~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H--~~~V~~  316 (357)
T 4g56_B          261 S--------------------AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SH--RDFVTG  316 (357)
T ss_dssp             G--------------------CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CC--SSCEEE
T ss_pred             E--------------------eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CC--CCCEEE
Confidence            4                    56778899999999999998 589999999999 9999998754322  22  234889


Q ss_pred             EeeeC---cEEEEEEeecCCCeEEEEEeeCC
Q 005459          502 LLWLG---KIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       502 ~~w~~---~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      ++|.+   ..|+++     +.+..|++|+..
T Consensus       317 vafsP~d~~~l~s~-----s~Dg~v~iW~~~  342 (357)
T 4g56_B          317 VAWSPLDHSKFTTV-----GWDHKVLHHHLP  342 (357)
T ss_dssp             EEECSSSTTEEEEE-----ETTSCEEEEECC
T ss_pred             EEEeCCCCCEEEEE-----cCCCeEEEEECC
Confidence            99963   466666     345789999874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=1e-28  Score=261.08  Aligned_cols=296  Identities=14%  Similarity=0.138  Sum_probs=213.1

Q ss_pred             cccccceeEEEeee--------CCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCc
Q 005459          127 PFAEKGLSVSNIVS--------DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGA  198 (696)
Q Consensus       127 ~~~~~~~~v~~~~~--------~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~  198 (696)
                      .+.++...|.++..        ++..|++|+.|+.|++|+...........                             
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~-----------------------------   66 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFG-----------------------------   66 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSE-----------------------------
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccc-----------------------------
Confidence            34567777877743        67889999999999997654321110000                             


Q ss_pred             cccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEE
Q 005459          199 FVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVG  274 (696)
Q Consensus       199 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g  274 (696)
                      .....+..|...|.++.          ++|+|+++++++.|+++++||..+++..   .+|...+. ++|+|++++||+|
T Consensus        67 ~~~~~l~~h~~~V~~~~----------~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~  136 (343)
T 2xzm_R           67 IPHKALTGHNHFVSDLA----------LSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSA  136 (343)
T ss_dssp             EEEEEECCCSSCEEEEE----------ECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEE
T ss_pred             cccchhccCCCceEEEE----------ECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence            00011234455566654          7889999999999999999998776543   68988887 9999999999999


Q ss_pred             ecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCC----------CeEEEEEcCCcEEEEEccCCeeEEE
Q 005459          275 TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN----------SAFAVGWKSRGLTVWSVSGCRLMST  344 (696)
Q Consensus       275 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg----------~~lasg~~Dg~v~vW~~~~~~~~~~  344 (696)
                      +.||+|++||+..  ........     ..+|...|.+++|+|++          .+|++|+.|++|++||. ......+
T Consensus       137 ~~d~~i~~wd~~~--~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~  208 (343)
T 2xzm_R          137 GAEREIKLWNILG--ECKFSSAE-----KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYT  208 (343)
T ss_dssp             ETTSCEEEEESSS--CEEEECCT-----TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEE
T ss_pred             cCCCEEEEEeccC--Cceeeeec-----ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEE
Confidence            9999999999874  22222221     11389999999999997          78999999999999994 5566778


Q ss_pred             eecccccceecccccCCCCCCccceecce---eeEEEcCC-CceEEEEecCCcceE--EEEecceeeeeccCCCCceeee
Q 005459          345 IRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY-GYRLYAIEEGSSERV--LIFSFGKCCLNRGVSGMTYARQ  418 (696)
Q Consensus       345 l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~-~~~l~~~~~~~~~~v--~~~~~~~~~~s~~~d~~~~~w~  418 (696)
                      +.+| ...|.+++|+|++    +.+++|+   ++++|+.. ......... +...|  ++|++...+++++.|+.+++|+
T Consensus       209 ~~~h-~~~v~~~~~s~~g----~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~  282 (343)
T 2xzm_R          209 FKAH-ESNVNHLSISPNG----KYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFN  282 (343)
T ss_dssp             EECC-SSCEEEEEECTTS----SEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEE
T ss_pred             EcCc-cccceEEEECCCC----CEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEE
Confidence            8888 6789999999999    8899887   89999984 333333331 23346  5666644455667788999999


Q ss_pred             eeecCCeE-EEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC
Q 005459          419 VIYGEDRL-LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK  483 (696)
Q Consensus       419 ~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg  483 (696)
                      +..+.... .......        ........+|..+|.+++|+|||++||+|+.||.+ +|+++++
T Consensus       283 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          283 LMTQSKAPVCTIEAEP--------ITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             SSSCCSCSEEECCCCS--------GGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             eCCCCCCceEEeecCc--------chhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            87654310 0000000        00011223688899999999999999999999999 9998765

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.97  E-value=5.9e-29  Score=269.64  Aligned_cols=306  Identities=11%  Similarity=0.103  Sum_probs=234.4

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      ++++|||+.+++++.|+++++|+....+..   ..| ..++ ..++|++++||+|+.||.|++||+.+ +.....+..  
T Consensus        62 ~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~--  137 (420)
T 3vl1_A           62 NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF-NLQREIDQA--  137 (420)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS-CEEEEETTS--
T ss_pred             eeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC-cceeeeccc--
Confidence            458999999999999999999998765432   334 4555 68999999999999999999999987 666666566  


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM  376 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~  376 (696)
                            |.+.|.+++|+|||+.|++|+.|++|++||+..++.+.++.+| ...|.+++|+|++    ..+++++   +++
T Consensus       138 ------h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~----~~l~s~~~d~~v~  206 (420)
T 3vl1_A          138 ------HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH-RATVTDIAIIDRG----RNVLSASLDGTIR  206 (420)
T ss_dssp             ------SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC-SSCEEEEEEETTT----TEEEEEETTSCEE
T ss_pred             ------ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC-CCcEEEEEEcCCC----CEEEEEcCCCcEE
Confidence                  9999999999999999999999999999999999999999888 7789999999998    8888887   799


Q ss_pred             EEcCCCceEEEEecCC---cceEEE-----------------------Eec-ceeeeeccCCCCceeeeeeecCCeEEEE
Q 005459          377 QWDEYGYRLYAIEEGS---SERVLI-----------------------FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVV  429 (696)
Q Consensus       377 ~W~~~~~~l~~~~~~~---~~~v~~-----------------------~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~  429 (696)
                      +|+..+++.+.....+   ...+..                       +++ ++.+++++.|+.+++|++..+...    
T Consensus       207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~----  282 (420)
T 3vl1_A          207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT----  282 (420)
T ss_dssp             EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE----
T ss_pred             EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee----
Confidence            9999999988887643   333322                       234 778999999999999998765541    


Q ss_pred             ecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCC-EEEEEeCCccE-EEEccCCce--EecCCccceeeeEEEeEeee
Q 005459          430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKW--RVFGDITQEQKIQSKGLLWL  505 (696)
Q Consensus       430 ~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~-~la~ag~dG~i-~w~~~sg~w--~~f~~~~~e~~~~v~~~~w~  505 (696)
                                     .....+|..+|.+++|+|+|+ +|++|+.||.+ +||+.+++.  ..+.   ......+..+.|.
T Consensus       283 ---------------~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~---~~~~~~v~~~~~~  344 (420)
T 3vl1_A          283 ---------------IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL---INEGTPINNVYFA  344 (420)
T ss_dssp             ---------------EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE---ESTTSCEEEEEEE
T ss_pred             ---------------EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh---ccCCCCceEEEeC
Confidence                           122236888999999999999 99999999999 999998753  1211   1112235666666


Q ss_pred             Cc-EEEEEEeecCCCeEEEEEeeCCCC---------CccceeEEeecCCccEEEEccCC---EEEEEEcCceEEEEEEE
Q 005459          506 GK-IIVVCNYIDSSNTYELLFYPRYHL---------DQSSLLCRKSLLAKPIVMDVYED---YILVTYRPFDVHIFHVK  571 (696)
Q Consensus       506 ~~-~lv~~~~~~~~~~~~lr~y~~~~l---------~~~~~~~~~~~~~~~l~~~~~~~---~llv~~~d~~~~l~~~~  571 (696)
                      +. .++++     +.+..|++|+....         .....+..+.-.-.-+.+++.+.   .+++++.++.+.+|+++
T Consensus       345 ~~~~l~s~-----~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          345 AGALFVSS-----GFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             TTEEEEEE-----TTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred             CCCEEEEe-----cCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence            44 55554     55689999997521         11111111111112367778877   78887889999999864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=9.4e-29  Score=257.26  Aligned_cols=274  Identities=17%  Similarity=0.236  Sum_probs=214.3

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEE
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT  332 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~  332 (696)
                      .+|.+.+. ++|+|++++||+|+.||+|++|++.+ ++....+.+        |..+|.+++|+|||++|++|+.|+.|+
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~--------h~~~v~~~~~~~~~~~l~s~~~d~~i~   90 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-GKFEKTISG--------HKLGISDVAWSSDSNLLVSASDDKTLK   90 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEEECC--------CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC-cccchhhcc--------CCCceEEEEEcCCCCEEEEECCCCEEE
Confidence            67888887 99999999999999999999999987 777788887        999999999999999999999999999


Q ss_pred             EEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEE--Eec-ceeee
Q 005459          333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCL  406 (696)
Q Consensus       333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~  406 (696)
                      +||+..++++.++.+| ...|.+++|+|++    ..+++|+   ++++|+.++++.+.....|...+..  +++ ++.++
T Consensus        91 vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  165 (312)
T 4ery_A           91 IWDVSSGKCLKTLKGH-SNYVFCCNFNPQS----NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV  165 (312)
T ss_dssp             EEETTTCCEEEEEECC-SSCEEEEEECSSS----SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEECCCCcEEEEEcCC-CCCEEEEEEcCCC----CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence            9999999999999988 7789999999998    8888887   8999999999999999899888854  444 78899


Q ss_pred             eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCce
Q 005459          407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW  485 (696)
Q Consensus       407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w  485 (696)
                      +++.|+.+++|++..+...                   ......+..++.+++|+|+|++|++++.||.+ +||+.+++.
T Consensus       166 ~~~~d~~i~~wd~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  226 (312)
T 4ery_A          166 SSSYDGLCRIWDTASGQCL-------------------KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC  226 (312)
T ss_dssp             EEETTSCEEEEETTTCCEE-------------------EEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE
T ss_pred             EEeCCCcEEEEECCCCcee-------------------eEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence            9999999999998665431                   11123567789999999999999999999999 999998863


Q ss_pred             E-ecCCccceeeeEEEeEee--e-CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEee-cCCcc--EEEEccCCEEEE
Q 005459          486 R-VFGDITQEQKIQSKGLLW--L-GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKS-LLAKP--IVMDVYEDYILV  558 (696)
Q Consensus       486 ~-~f~~~~~e~~~~v~~~~w--~-~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~-~~~~~--l~~~~~~~~llv  558 (696)
                      . .+...  .....+....+  . +..++++     +.+..|++|+....   ..+.... ....+  +.+++.+..+++
T Consensus       227 ~~~~~~~--~~~~~~~~~~~~~~~~~~l~sg-----~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s  296 (312)
T 4ery_A          227 LKTYTGH--KNEKYCIFANFSVTGGKWIVSG-----SEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTENIIAS  296 (312)
T ss_dssp             EEEECSS--CCSSSCCCEEEECSSSCEEEEC-----CTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred             EEEEEec--CCceEEEEEEEEeCCCcEEEEE-----CCCCEEEEEECCCc---hhhhhhhccCCcEEEEeecCcCCceEE
Confidence            2 22221  11111111222  2 3455554     45578999987521   1222211 12222  455678888888


Q ss_pred             EE--cCceEEEEEE
Q 005459          559 TY--RPFDVHIFHV  570 (696)
Q Consensus       559 ~~--~d~~~~l~~~  570 (696)
                      ++  .|+.+++|+.
T Consensus       297 ~~~~~d~~i~~W~~  310 (312)
T 4ery_A          297 AALENDKTIKLWKS  310 (312)
T ss_dssp             EECTTTCCEEEEEC
T ss_pred             EEccCCccEEEecC
Confidence            66  5899999975

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.5e-29  Score=274.51  Aligned_cols=370  Identities=12%  Similarity=0.096  Sum_probs=246.0

Q ss_pred             eEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcC-CCcEEEEEecCcEEEEEEEEecCc
Q 005459           23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQITEK  101 (696)
Q Consensus        23 ~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsP-Dg~~lav~t~dg~l~l~~l~~~~~  101 (696)
                      ....|+|+++.+++..     .|+..  +..+..+.+.     +.+.+.+++|+| |+++||+++.||.|++|++.....
T Consensus        31 ~~~~f~~~~~~~~~~~-----~w~~~--g~~~~~~~~~-----h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~   98 (437)
T 3gre_A           31 DYKEFGPIQEIVRSPN-----MGNLR--GKLIATLMEN-----EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV   98 (437)
T ss_dssp             GCGGGCCCCCCCCCCC-----GGGCC--CCEEEEECTT-----TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT
T ss_pred             chhhcCCccccccccc-----ccccc--ceEEeeeccC-----CCCceEEEEECCCCCCEEEEecCCceEEEeECccccc
Confidence            3345899998887665     48863  3444444221     337899999999 999999999999999999875221


Q ss_pred             ccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--eeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCccc
Q 005459          102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA  179 (696)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~  179 (696)
                      ....   .      ...    .     ..+...|.++  .++++.+++++.||.|++|+.+............   ...+
T Consensus        99 ~~~~---~------~~~----~-----~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~---~~~i  157 (437)
T 3gre_A           99 GEVY---S------SSL----T-----YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN---CECI  157 (437)
T ss_dssp             TCCC---S------CSE----E-----EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEE---EEEE
T ss_pred             Cccc---c------eee----e-----ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccc---ccee
Confidence            1000   0      000    0     0123345444  5577899999999999997653211111100000   0011


Q ss_pred             ccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cC-
Q 005459          180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LG-  255 (696)
Q Consensus       180 ~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~-  255 (696)
                      +.+.+.++                  .+...+.++.        ..+++||+.+++++.|+++++||...++..   .+ 
T Consensus       158 ~~~~~~~~------------------~~~~~~~~~~--------~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  211 (437)
T 3gre_A          158 RKINLKNF------------------GKNEYAVRMR--------AFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS  211 (437)
T ss_dssp             EEEEGGGG------------------SSCCCEEEEE--------EEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             EEEEccCc------------------ccccCceEEE--------EEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC
Confidence            11111110                  0122343333        225689999999999999999998766543   44 


Q ss_pred             -CCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEEC----CCCCeEEEEEcCC
Q 005459          256 -SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT----PDNSAFAVGWKSR  329 (696)
Q Consensus       256 -~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~s----pdg~~lasg~~Dg  329 (696)
                       |...+. ++|+|++++||+|+.||+|++||++. ++.+.++..       .|..+|.+++|+    |||.+|++|+.||
T Consensus       212 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~-------~~~~~v~~~~~~~~~s~~~~~l~s~~~dg  283 (437)
T 3gre_A          212 PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-NVLIRSWSF-------GDHAPITHVEVCQFYGKNSVIVVGGSSKT  283 (437)
T ss_dssp             GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEEBC-------TTCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-ccEEEEEec-------CCCCceEEEEeccccCCCccEEEEEcCCC
Confidence             667776 99999999999999999999999998 777777762       288899999555    5788999999999


Q ss_pred             cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecC--CcceE--EEEecceee
Q 005459          330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEG--SSERV--LIFSFGKCC  405 (696)
Q Consensus       330 ~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~--~~~~v--~~~~~~~~~  405 (696)
                      .|++||+.+++++.++.+| ...+..+.|+|++    +.+....               ..+  |...|  ++++.++.+
T Consensus       284 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~l~~~~---------------~~~~~~~~~v~~l~~~~~~~l  343 (437)
T 3gre_A          284 FLTIWNFVKGHCQYAFINS-DEQPSMEHFLPIE----KGLEELN---------------FCGIRSLNALSTISVSNDKIL  343 (437)
T ss_dssp             EEEEEETTTTEEEEEEESS-SSCCCGGGGSCBC----SSGGGCC---------------CCCCCSGGGGCCEEEETTEEE
T ss_pred             cEEEEEcCCCcEEEEEEcC-CCCCccceecccc----cccccce---------------ecccccCCceEEEEECCceEE
Confidence            9999999999999999988 6778889999987    3332110               122  56666  444447889


Q ss_pred             eeccCCCCceeeeeeecCCeEEEEecCCCC-cce---------e--EE-----eecCeeeecCCCceEEEEEcCC--CCE
Q 005459          406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTD-ELK---------I--LH-----LNLPVSYISQNWPVQHVAASKD--GMF  466 (696)
Q Consensus       406 ~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~-~~~---------w--~~-----~~~~~~~~~~~~~I~~va~s~d--G~~  466 (696)
                      ++++.|+.+++|++..++....+....... ...         .  ..     .........|...|.+++|+++  +.+
T Consensus       344 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~  423 (437)
T 3gre_A          344 LTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPL  423 (437)
T ss_dssp             EEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEE
T ss_pred             EecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceE
Confidence            999999999999988776543332211110 000         0  00     0001123358999999999998  889


Q ss_pred             EEEEeCCccE-EEE
Q 005459          467 LAVAGLHGLI-LYD  479 (696)
Q Consensus       467 la~ag~dG~i-~w~  479 (696)
                      |++|+.||.| +|+
T Consensus       424 l~s~~~dG~I~iw~  437 (437)
T 3gre_A          424 LVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEETTSCEEEEC
T ss_pred             EEEEcCCceEEEeC
Confidence            9999999999 995

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.96  E-value=5.3e-28  Score=255.56  Aligned_cols=276  Identities=14%  Similarity=0.173  Sum_probs=207.5

Q ss_pred             ecCCCCeEE-EEE-----cC-CCcEEEEEecCCeEEEEEccCC------CceeeEEeeccCCCCCCCCCCeEEEEECCCC
Q 005459          253 ELGSGDAVC-ASI-----AP-EQQILAVGTRRGVVELYDLAES------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN  319 (696)
Q Consensus       253 ~~~~~~~v~-v~~-----sp-~~~~la~g~~dg~v~vw~~~~~------~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg  319 (696)
                      +.+|.+.|. ++|     ++ ++++||+|+.||+|++||+...      +.....+.+        |.++|.+++|+||+
T Consensus        17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~--------h~~~V~~~~~~~~~   88 (343)
T 2xzm_R           17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG--------HNHFVSDLALSQEN   88 (343)
T ss_dssp             EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC--------CSSCEEEEEECSST
T ss_pred             eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc--------CCCceEEEEECCCC
Confidence            468999887 999     77 9999999999999999999752      133455666        99999999999999


Q ss_pred             CeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEe--cCCcc
Q 005459          320 SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE--EGSSE  394 (696)
Q Consensus       320 ~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~--~~~~~  394 (696)
                      .+|++|+.|++|++||+.+++++.++.+| ...|.+++|+|++    ..+++|+   ++++|+..+.......  .+|..
T Consensus        89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h-~~~v~~v~~sp~~----~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~  163 (343)
T 2xzm_R           89 CFAISSSWDKTLRLWDLRTGTTYKRFVGH-QSEVYSVAFSPDN----RQILSAGAEREIKLWNILGECKFSSAEKENHSD  163 (343)
T ss_dssp             TEEEEEETTSEEEEEETTSSCEEEEEECC-CSCEEEEEECSST----TEEEEEETTSCEEEEESSSCEEEECCTTTSCSS
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEEEcCC-CCcEEEEEECCCC----CEEEEEcCCCEEEEEeccCCceeeeecccCCCc
Confidence            99999999999999999999999999988 7789999999998    8888887   8999999855443332  25777


Q ss_pred             eEEEE--ec-c----------eeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEc
Q 005459          395 RVLIF--SF-G----------KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAAS  461 (696)
Q Consensus       395 ~v~~~--~~-~----------~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s  461 (696)
                      .+..+  ++ +          ..+++++.|+++++|+. . ..                   ....+.+|..+|.+++|+
T Consensus       164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~-~~-------------------~~~~~~~h~~~v~~~~~s  222 (343)
T 2xzm_R          164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-N-FQ-------------------IRYTFKAHESNVNHLSIS  222 (343)
T ss_dssp             CEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-T-TE-------------------EEEEEECCSSCEEEEEEC
T ss_pred             eeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-C-Cc-------------------eeEEEcCccccceEEEEC
Confidence            77444  44 2          57899999999999992 1 11                   234677899999999999


Q ss_pred             CCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcE-EEEEEeecCCCeEEEEEeeCCCCCccc--ee
Q 005459          462 KDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKI-IVVCNYIDSSNTYELLFYPRYHLDQSS--LL  537 (696)
Q Consensus       462 ~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~-lv~~~~~~~~~~~~lr~y~~~~l~~~~--~~  537 (696)
                      |||++||+|+.||.+ +||+.+......   .......+..++|.++. ++++ ..    +..+++|+........  .+
T Consensus       223 ~~g~~l~sgs~dg~v~iwd~~~~~~~~~---~~~~~~~v~~v~~sp~~~~la~-~~----d~~v~iw~~~~~~~~~~~~~  294 (343)
T 2xzm_R          223 PNGKYIATGGKDKKLLIWDILNLTYPQR---EFDAGSTINQIAFNPKLQWVAV-GT----DQGVKIFNLMTQSKAPVCTI  294 (343)
T ss_dssp             TTSSEEEEEETTCEEEEEESSCCSSCSE---EEECSSCEEEEEECSSSCEEEE-EE----SSCEEEEESSSCCSCSEEEC
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcccce---eecCCCcEEEEEECCCCCEEEE-EC----CCCEEEEEeCCCCCCceEEe
Confidence            999999999999999 999854321110   00111237788887543 3333 22    2459999875211111  00


Q ss_pred             -------------EEeecCCccEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459          538 -------------CRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL  572 (696)
Q Consensus       538 -------------~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~  572 (696)
                                   |...+  .-+.+++.+++|++++.|+.+++|+++-
T Consensus       295 ~~~~~~~~~~~~~~~~~v--~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          295 EAEPITKAEGQKGKNPQC--TSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             CCCSGGGBTTBCCSCCCE--EEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             ecCcchhhhhhcCCCCce--EEEEECCCCCeEEEecCCceEEEEEEEc
Confidence                         11111  1267778999999999999999999863

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.96  E-value=4.3e-28  Score=253.72  Aligned_cols=304  Identities=14%  Similarity=0.211  Sum_probs=232.6

Q ss_pred             EEEEEeCCcEEEEeeccCCceeeeeeecc---eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC--ceeeEEe
Q 005459          223 LFVLYSNGQLMSCSVSKKGLKLAEFIKID---KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA--SLIRTVS  296 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~--~~~~~~~  296 (696)
                      .++++|||+.++++..++.+..|......   ...+|...+. ++|+|++++|++++ ||.|++|++.+..  .....+.
T Consensus        14 ~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~   92 (337)
T 1gxr_A           14 SFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD   92 (337)
T ss_dssp             EEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE
T ss_pred             EEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeeccc
Confidence            46689999999888776666665433221   1257888877 99999999999999 9999999998732  1233333


Q ss_pred             eccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe--eEEEeecccccceecccccCCCCCCccceecce-
Q 005459          297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-  373 (696)
Q Consensus       297 ~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~--~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-  373 (696)
                      ..      +|.++|.+++|+|||+.|++|+.|+.|++||+.+++  ....+..| ...+.+++|+|++    +.++++. 
T Consensus        93 ~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~i~~~~~~~~~----~~l~~~~~  161 (337)
T 1gxr_A           93 CL------NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS-APACYALAISPDS----KVCFSCCS  161 (337)
T ss_dssp             CS------CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECS-SSCEEEEEECTTS----SEEEEEET
T ss_pred             cc------CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccC-CCceEEEEECCCC----CEEEEEeC
Confidence            11      289999999999999999999999999999998876  56667666 6779999999998    7888776 


Q ss_pred             --eeEEEcCCCceEEEEecCCcceEEE--Eec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee
Q 005459          374 --SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY  448 (696)
Q Consensus       374 --~~~~W~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  448 (696)
                        .+.+|+.++++......+|...+..  +++ ++.+++++.|+.+++|++..+..                     ...
T Consensus       162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~---------------------~~~  220 (337)
T 1gxr_A          162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ---------------------LQQ  220 (337)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------EEE
T ss_pred             CCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCce---------------------Eee
Confidence              8999999999999999889888854  454 78899999999999999765543                     112


Q ss_pred             ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEE
Q 005459          449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLF  525 (696)
Q Consensus       449 ~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~  525 (696)
                      ..+..+|.+++|+|+|+++++++.+|.+ +||+.+++-..+.    .....+..+.|.  ++.++++     +.+..|++
T Consensus       221 ~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~-----~~dg~i~~  291 (337)
T 1gxr_A          221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH----LHESCVLSLKFAYCGKWFVST-----GKDNLLNA  291 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC----CCSSCEEEEEECTTSSEEEEE-----ETTSEEEE
T ss_pred             ecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEc----CCccceeEEEECCCCCEEEEe-----cCCCcEEE
Confidence            3467789999999999999999999999 9999987644332    122347788997  4566665     23468999


Q ss_pred             eeCCCCCccceeEEeecCCcc--EEEEccCCEEEEEEcCceEEEEEEE
Q 005459          526 YPRYHLDQSSLLCRKSLLAKP--IVMDVYEDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       526 y~~~~l~~~~~~~~~~~~~~~--l~~~~~~~~llv~~~d~~~~l~~~~  571 (696)
                      |+.+...   .........++  +.+++.++++++++.|+.+++|++.
T Consensus       292 ~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          292 WRTPYGA---SIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EETTTCC---EEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             EECCCCe---EEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            9876221   22222233333  4566788999999999999999874

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.96  E-value=7e-28  Score=249.29  Aligned_cols=250  Identities=17%  Similarity=0.127  Sum_probs=194.2

Q ss_pred             CCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeec-----ceecCCCCeEE-EEEcCC--CcEEEEEecC
Q 005459          206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-----DKELGSGDAVC-ASIAPE--QQILAVGTRR  277 (696)
Q Consensus       206 ~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~v~-v~~sp~--~~~la~g~~d  277 (696)
                      +|...|.+++          |++||+.+++++.|+++++|+....     ..+.+|.+.|. ++|+|+  +++||+|+.|
T Consensus         7 ~h~~~V~~~~----------~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D   76 (297)
T 2pm7_B            7 AHNEMIHDAV----------MDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD   76 (297)
T ss_dssp             SCSSCEEEEE----------ECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             CCcCceEEEE----------ECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC
Confidence            4556677655          7899999999999999999997532     22378999988 999874  8999999999


Q ss_pred             CeEEEEEccCCC-ceeeEEeeccCCCCCCCCCCeEEEEECCC--CCeEEEEEcCCcEEEEEccCCe--eEEEeecccccc
Q 005459          278 GVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISLSS  352 (696)
Q Consensus       278 g~v~vw~~~~~~-~~~~~~~~~~~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg~v~vW~~~~~~--~~~~l~~~~~~~  352 (696)
                      |+|++||+++.. ..+..+..        |.+.|.+++|+|+  |.+|++|+.|++|++||+..+.  ....+.+| ...
T Consensus        77 ~~v~iWd~~~~~~~~~~~~~~--------h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h-~~~  147 (297)
T 2pm7_B           77 GKVMIWKEENGRWSQIAVHAV--------HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAH-AIG  147 (297)
T ss_dssp             TEEEEEEBSSSCBCCCEEECC--------CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECC-SSC
T ss_pred             CEEEEEEcCCCceEEEEEeec--------CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecc-cCc
Confidence            999999998721 34556666        9999999999998  8999999999999999997653  23556666 678


Q ss_pred             eecccccCCCCC---------Cccceecce---eeEEEcCCCce----EEEEecCCcceEEE--Eec-c---eeeeeccC
Q 005459          353 ISSPIVKPNQDC---------KYEPLMSGT---SMMQWDEYGYR----LYAIEEGSSERVLI--FSF-G---KCCLNRGV  410 (696)
Q Consensus       353 v~~~~~sp~~~~---------~~~~l~sg~---~~~~W~~~~~~----l~~~~~~~~~~v~~--~~~-~---~~~~s~~~  410 (696)
                      |.+++|+|+...         ....+++|+   ++++|+..+++    +...+.+|...|..  |++ +   +.+++++.
T Consensus       148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~  227 (297)
T 2pm7_B          148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ  227 (297)
T ss_dssp             EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred             cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC
Confidence            999999997410         125788877   89999987654    66778899999954  444 2   78999999


Q ss_pred             CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEcc-CCceEec
Q 005459          411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR-QKKWRVF  488 (696)
Q Consensus       411 d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~-sg~w~~f  488 (696)
                      |+++++|++......             |...  ......|..+|.+++|+|||++||+++.||.+ +|+.. .|.|+..
T Consensus       228 D~~v~iWd~~~~~~~-------------~~~~--~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~~  292 (297)
T 2pm7_B          228 DRTCIIWTQDNEQGP-------------WKKT--LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA  292 (297)
T ss_dssp             TSCEEEEEESSTTSC-------------CEEE--ESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEC
T ss_pred             CCcEEEEEeCCCCCc-------------ccee--eeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEec
Confidence            999999998654321             0000  00113577889999999999999999999999 99986 5677754


Q ss_pred             C
Q 005459          489 G  489 (696)
Q Consensus       489 ~  489 (696)
                      .
T Consensus       293 ~  293 (297)
T 2pm7_B          293 G  293 (297)
T ss_dssp             -
T ss_pred             c
Confidence            3

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=2.2e-27  Score=252.29  Aligned_cols=317  Identities=12%  Similarity=0.076  Sum_probs=218.8

Q ss_pred             cccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eeeCCCe
Q 005459           67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKH  144 (696)
Q Consensus        67 ~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~~~~  144 (696)
                      .+++.+++|+||+++||+++.+|.|++|++..+...                     ....+..+...|.+  +.++++.
T Consensus         8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~---------------------~~~~~~~h~~~v~~~~~~~~~~~   66 (372)
T 1k8k_C            8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV---------------------QVHELKEHNGQVTGVDWAPDSNR   66 (372)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE---------------------EEEEEECCSSCEEEEEEETTTTE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEE---------------------eeeeecCCCCcccEEEEeCCCCE
Confidence            467899999999999999999999999999754210                     00001223334444  4667889


Q ss_pred             EEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEE
Q 005459          145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF  224 (696)
Q Consensus       145 llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  224 (696)
                      +++++.||.|++|+.+.......                                  .....+...|.++.         
T Consensus        67 l~~~~~dg~i~vwd~~~~~~~~~----------------------------------~~~~~~~~~v~~~~---------  103 (372)
T 1k8k_C           67 IVTCGTDRNAYVWTLKGRTWKPT----------------------------------LVILRINRAARCVR---------  103 (372)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEE----------------------------------EECCCCSSCEEEEE---------
T ss_pred             EEEEcCCCeEEEEECCCCeeeee----------------------------------EEeecCCCceeEEE---------
Confidence            99999999999866532211100                                  01122344566655         


Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeecce------e-cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccC---------
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK------E-LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE---------  287 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~------~-~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~---------  287 (696)
                       ++++|+.+++++.++.+++|+....+.      . .+|...+. ++|+|++++|++|+.||.|++||+..         
T Consensus       104 -~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~  182 (372)
T 1k8k_C          104 -WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP  182 (372)
T ss_dssp             -ECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred             -ECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence             678899999999999999999876542      1 45777776 99999999999999999999999641         


Q ss_pred             --------CCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceeccccc
Q 005459          288 --------SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK  359 (696)
Q Consensus       288 --------~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~s  359 (696)
                              .+..+..+..        |.+.|.+++|+|||+.|++|+.|+.|++||+.+++++.++..| ...+.+++|+
T Consensus       183 ~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~  253 (372)
T 1k8k_C          183 TPWGSKMPFGELMFESSS--------SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAVTFI  253 (372)
T ss_dssp             BTTBSCCCTTCEEEECCC--------CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS-SCCEEEEEEE
T ss_pred             cccccccchhhheEecCC--------CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC-CCCeEEEEEe
Confidence                    1455666666        9999999999999999999999999999999999999999887 6679999999


Q ss_pred             CCCCCCccceecce--eeEEEcCCC--ceEEEE--ecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCC
Q 005459          360 PNQDCKYEPLMSGT--SMMQWDEYG--YRLYAI--EEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSED  433 (696)
Q Consensus       360 p~~~~~~~~l~sg~--~~~~W~~~~--~~l~~~--~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~  433 (696)
                      |++    ..+++|.  .+++|+...  ++....  ...+...           .......++.|.....+.+..      
T Consensus       254 ~~~----~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~------  312 (372)
T 1k8k_C          254 TES----SLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS-----------SQRGLTARERFQNLDKKASSE------  312 (372)
T ss_dssp             ETT----EEEEEETTSSCEEEEEETTTTEEEECCCCCCC-------------------CHHHHHHHCCCCC---------
T ss_pred             cCC----CEEEEEeCCeEEEEEccCcCceEEEeeccCccccc-----------hhhhcchhhhhhhcccccccc------
Confidence            987    6666655  777787765  432211  1111000           001112233331111111000      


Q ss_pred             CCcceeEEeecCeee-ecCCCceEEEEEc-CCC---CEEEEEeCCccE-EEEccCCc
Q 005459          434 TDELKILHLNLPVSY-ISQNWPVQHVAAS-KDG---MFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       434 ~~~~~w~~~~~~~~~-~~~~~~I~~va~s-~dG---~~la~ag~dG~i-~w~~~sg~  484 (696)
                            ........+ .+|..+|.+++|+ ++|   ++||+||.||.+ +|++.+++
T Consensus       313 ------~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          313 ------GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             ------------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             ------cCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence                  000000222 4899999999855 787   999999999999 99998754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.96  E-value=1.1e-27  Score=262.30  Aligned_cols=299  Identities=15%  Similarity=0.124  Sum_probs=239.5

Q ss_pred             EEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCC
Q 005459           73 AVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG  152 (696)
Q Consensus        73 v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g  152 (696)
                      .++++||++||+++.||.|++||+..+.....                       +.++...|.++..+++.+++++.||
T Consensus       123 ~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~-----------------------~~~h~~~v~~~~~~~~~l~s~~~dg  179 (445)
T 2ovr_B          123 TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT-----------------------LVGHTGGVWSSQMRDNIIISGSTDR  179 (445)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEETTTCCEEEE-----------------------CCCCSSCEEEEEEETTEEEEEETTS
T ss_pred             EEEEEcCCEEEEEECCCcEEEEECCCCcEEEE-----------------------EcCCCCCEEEEEecCCEEEEEeCCC
Confidence            36788999999999999999999864432111                       2345556777777788999999999


Q ss_pred             cEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcE
Q 005459          153 SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQL  232 (696)
Q Consensus       153 ~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~  232 (696)
                      .|++|+++......                                    .+..+...|.++.            .+++.
T Consensus       180 ~i~vwd~~~~~~~~------------------------------------~~~~h~~~v~~~~------------~~~~~  211 (445)
T 2ovr_B          180 TLKVWNAETGECIH------------------------------------TLYGHTSTVRCMH------------LHEKR  211 (445)
T ss_dssp             CEEEEETTTTEEEE------------------------------------EECCCSSCEEEEE------------EETTE
T ss_pred             eEEEEECCcCcEEE------------------------------------EECCCCCcEEEEE------------ecCCE
Confidence            99997654321110                                    1113344566554            25778


Q ss_pred             EEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCC
Q 005459          233 MSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG  308 (696)
Q Consensus       233 ~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g  308 (696)
                      +++++.|+++++||...++..   .+|...+. +++  ++++|++|+.||.|++||+++ ++.+.++.+        |.+
T Consensus       212 l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~--------~~~  280 (445)
T 2ovr_B          212 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET-ETCLHTLQG--------HTN  280 (445)
T ss_dssp             EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG-TEEEEEECC--------CSS
T ss_pred             EEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC-CcEeEEecC--------CCC
Confidence            899999999999998766543   57887776 777  789999999999999999988 788888887        999


Q ss_pred             CeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceE
Q 005459          309 PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL  385 (696)
Q Consensus       309 ~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l  385 (696)
                      .|.+++|  ||+.|++|+.|+.|++||+.+++++.++.+| ...+.++.++  +    ..+++|+   .+.+|+..+++.
T Consensus       281 ~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~--~----~~l~~~~~dg~i~vwd~~~~~~  351 (445)
T 2ovr_B          281 RVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTSGMELK--D----NILVSGNADSTVKIWDIKTGQC  351 (445)
T ss_dssp             CEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC-CSCEEEEEEE--T----TEEEEEETTSCEEEEETTTCCE
T ss_pred             ceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC-cccEEEEEEe--C----CEEEEEeCCCeEEEEECCCCcE
Confidence            9999999  8999999999999999999999999999887 5667776663  3    5677776   899999999998


Q ss_pred             EEEecC---CcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee-----ecCCCceE
Q 005459          386 YAIEEG---SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY-----ISQNWPVQ  456 (696)
Q Consensus       386 ~~~~~~---~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-----~~~~~~I~  456 (696)
                      +....+   |...|..+.+ ++.+++++.|+.+++|++..++.                    ...+     .+|..+|.
T Consensus       352 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~--------------------~~~~~~~~~~~~~~~v~  411 (445)
T 2ovr_B          352 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF--------------------IRNLVTLESGGSGGVVW  411 (445)
T ss_dssp             EEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE--------------------EEEEEECTTGGGTCEEE
T ss_pred             EEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCce--------------------eeeeeccccCCCCceEE
Confidence            888876   7788988888 88899999999999999876654                    1222     36788999


Q ss_pred             EEEEcCCCCEEEEEeCCcc----E-EEEccC
Q 005459          457 HVAASKDGMFLAVAGLHGL----I-LYDIRQ  482 (696)
Q Consensus       457 ~va~s~dG~~la~ag~dG~----i-~w~~~s  482 (696)
                      +++|+|+|.++|+|+.||.    + +||...
T Consensus       412 ~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          412 RIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            9999999999999999997    7 999764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.9e-28  Score=272.83  Aligned_cols=323  Identities=8%  Similarity=-0.018  Sum_probs=218.0

Q ss_pred             cccccEEEEcCCC---------cEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE
Q 005459           67 EGENLQAVWSPDT---------KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN  137 (696)
Q Consensus        67 ~G~~~~v~wsPDg---------~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~  137 (696)
                      .|.+.+++|+|++         ++||+++.++..        .                                    .
T Consensus       133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------~------------------------------------~  168 (524)
T 2j04_B          133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------E------------------------------------P  168 (524)
T ss_dssp             CC--CCCSCEEECCCCSSCSSEEEEEEEEEC-------------------------------------------------
T ss_pred             CCceeEEEecccCCCCccCcCCeEEEEEEecccC--------C------------------------------------c
Confidence            4788899999998         899999876420        0                                    0


Q ss_pred             eeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEc
Q 005459          138 IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC  217 (696)
Q Consensus       138 ~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  217 (696)
                      ..+++..++.++.|++|++|+++........                                ...+..+...|.+++|+
T Consensus       169 ~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~--------------------------------~~~l~~~~~~V~~v~ws  216 (524)
T 2j04_B          169 LNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK--------------------------------VQTIVHSFGEVWDLKWH  216 (524)
T ss_dssp             -------------CEEEEEEEEETTTCCEEE--------------------------------EEEEEECCCSEEEEEEC
T ss_pred             cchhhhhhccCCCCceEEEEEccCCCCCceE--------------------------------EEEEEecCCcEEEEEEC
Confidence            0123556777888999999765432211000                                00011223457777766


Q ss_pred             cCcceEEEEEeCCcEEEEeeccCCceeeeeeecc--------------eecCCCCeEE-EEEcCCCcEEEEEecCCeEEE
Q 005459          218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--------------KELGSGDAVC-ASIAPEQQILAVGTRRGVVEL  282 (696)
Q Consensus       218 ~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~--------------~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~v  282 (696)
                      |...    ..++|.++++++.|+++++|+...++              .+.+|...+. ++|+|++ .||+|+.||+|++
T Consensus       217 p~~~----~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~l  291 (524)
T 2j04_B          217 EGCH----APHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAE  291 (524)
T ss_dssp             SSCC----CSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEE
T ss_pred             CCCC----CCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEE
Confidence            6421    12457899999999999999986542              2356777776 9999864 8999999999999


Q ss_pred             EEccCCCceeeEEeeccCCCCCCCCCCeEEE--EECCCC-CeEEEEEcCCcEEEEEccCCeeEEEeecccc-cceecccc
Q 005459          283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCI--AWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTIRQISL-SSISSPIV  358 (696)
Q Consensus       283 w~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l--~~spdg-~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~-~~v~~~~~  358 (696)
                      ||+++...+...+.+        |.++|++|  +|+|+| ++||||+.|++|+|||+.++++..++.+|.. ..|.+++|
T Consensus       292 WD~~~~~~~~~~~~~--------H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f  363 (524)
T 2j04_B          292 FDLTDPEVPSFYDQV--------HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY  363 (524)
T ss_dssp             EETTBCSSCSEEEEC--------SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE
T ss_pred             EECCCCCCceEEeec--------ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEe
Confidence            999873345566777        99999999  689998 8999999999999999998887777776632 24789999


Q ss_pred             cCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCe-------
Q 005459          359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDR-------  425 (696)
Q Consensus       359 sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~-------  425 (696)
                      +|++    +.+++++   ++++|+..++.++..+.+|...|..+.|   ++.+++++.|+++++|++...--.       
T Consensus       364 sp~~----~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~  439 (524)
T 2j04_B          364 CPQI----YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSA  439 (524)
T ss_dssp             ETTT----TEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC-----
T ss_pred             CCCc----CeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCcc
Confidence            9998    7777765   8999999988877777789999955554   788999999999999986432100       


Q ss_pred             ----EEEEecCCCCc----ce--------eE-EeecCeeeecCCCceEEEEEcCCC---CEEEEEeCCccE-EEEccC
Q 005459          426 ----LLVVQSEDTDE----LK--------IL-HLNLPVSYISQNWPVQHVAASKDG---MFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       426 ----~~~~~~~~~~~----~~--------w~-~~~~~~~~~~~~~~I~~va~s~dG---~~la~ag~dG~i-~w~~~s  482 (696)
                          ..++.-.-.++    ..        |. ....+..+.+|..+|.+++|+|++   ..+|+|+.+|++ +|++.-
T Consensus       440 ~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          440 TQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             -CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             ceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence                01211110010    01        11 233455677899999999999996   499999999999 999754

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=3.6e-28  Score=253.88  Aligned_cols=250  Identities=15%  Similarity=0.119  Sum_probs=194.3

Q ss_pred             CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc-----eecCCCCeEE-EEEcC--CCcEEEEEec
Q 005459          205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID-----KELGSGDAVC-ASIAP--EQQILAVGTR  276 (696)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~v~-v~~sp--~~~~la~g~~  276 (696)
                      .+|...|.++.          |++||+.+++++.|+++++||...++     .+.+|.+.|. ++|+|  ++++||+|+.
T Consensus        10 ~~H~~~V~~v~----------~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~   79 (316)
T 3bg1_A           10 TSHEDMIHDAQ----------MDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY   79 (316)
T ss_dssp             ----CCEEEEE----------ECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET
T ss_pred             ccccCeEEEee----------EcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC
Confidence            35666777755          78899999999999999999987543     2368999888 99986  4899999999


Q ss_pred             CCeEEEEEccCCC-ceeeEEeeccCCCCCCCCCCeEEEEECCC--CCeEEEEEcCCcEEEEEccCCe---eEEEeecccc
Q 005459          277 RGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISL  350 (696)
Q Consensus       277 dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg~v~vW~~~~~~---~~~~l~~~~~  350 (696)
                      ||+|++||+++.. ....++.+        |.+.|++++|+|+  |.+||+|+.|++|++|++.++.   ....+.+| .
T Consensus        80 D~~v~iWd~~~~~~~~~~~~~~--------h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h-~  150 (316)
T 3bg1_A           80 DRKVIIWREENGTWEKSHEHAG--------HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH-T  150 (316)
T ss_dssp             TSCEEEECCSSSCCCEEEEECC--------CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS-S
T ss_pred             CCEEEEEECCCCcceEEEEccC--------CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc-c
Confidence            9999999998721 34556666        9999999999998  8899999999999999998753   23444555 6


Q ss_pred             cceecccccCCCCC-------------Cccceecce---eeEEEcCCCc---eEEEEecCCcceEEEEec---c----ee
Q 005459          351 SSISSPIVKPNQDC-------------KYEPLMSGT---SMMQWDEYGY---RLYAIEEGSSERVLIFSF---G----KC  404 (696)
Q Consensus       351 ~~v~~~~~sp~~~~-------------~~~~l~sg~---~~~~W~~~~~---~l~~~~~~~~~~v~~~~~---~----~~  404 (696)
                      ..+.+++|+|+...             ....+++|+   ++++|+.++.   ++...+.+|...|..+.|   +    +.
T Consensus       151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~  230 (316)
T 3bg1_A          151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST  230 (316)
T ss_dssp             SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred             CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence            77999999997310             125788887   8999998754   566777899999965555   3    67


Q ss_pred             eeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEcc-C
Q 005459          405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR-Q  482 (696)
Q Consensus       405 ~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~-s  482 (696)
                      +++++.|+++++|++......            .+    .+..+..|+.+|.+++|+|||++||+|+.||.+ +|+.. .
T Consensus       231 las~s~D~~v~iw~~~~~~~~------------~~----~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          231 IASCSQDGRVFIWTCDDASSN------------TW----SPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVD  294 (316)
T ss_dssp             EEEEETTCEEEEEECSSTTCC------------CC----BCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred             EEEEcCCCeEEEEEccCcccc------------ch----hhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence            999999999999997653210            00    123345688899999999999999999999999 99975 5


Q ss_pred             CceEecC
Q 005459          483 KKWRVFG  489 (696)
Q Consensus       483 g~w~~f~  489 (696)
                      ++|....
T Consensus       295 g~~~~~~  301 (316)
T 3bg1_A          295 GQWVCIS  301 (316)
T ss_dssp             SCEEEEE
T ss_pred             CcEEEee
Confidence            6776543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.4e-27  Score=258.14  Aligned_cols=305  Identities=11%  Similarity=0.116  Sum_probs=232.7

Q ss_pred             eEEEEEeCCc-EEEEeeccCCceeeee----eecce------e---c----C------CCCeEE-EEEcCCCcEEEEEec
Q 005459          222 LLFVLYSNGQ-LMSCSVSKKGLKLAEF----IKIDK------E---L----G------SGDAVC-ASIAPEQQILAVGTR  276 (696)
Q Consensus       222 ~~~~~s~dG~-~~~~~~~d~~~~~~~~----~~~~~------~---~----~------~~~~v~-v~~sp~~~~la~g~~  276 (696)
                      ..+.++|||+ ++++++.|+.+++|+.    ..++.      .   .    +      |.+.+. ++|+|++++||+|+.
T Consensus        49 ~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  128 (425)
T 1r5m_A           49 VSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVE  128 (425)
T ss_dssp             SEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEET
T ss_pred             EEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeC
Confidence            4466899999 9999999999999999    65541      1   1    1      565666 999999999999999


Q ss_pred             CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccc----
Q 005459          277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS----  352 (696)
Q Consensus       277 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~----  352 (696)
                      ||.|++|+ .+ +..+..+..        |.++|.+++|+|||+.|++++.|+.|++||+.+++....+..+ ...    
T Consensus       129 dg~i~i~~-~~-~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~  197 (425)
T 1r5m_A          129 NGELRLWN-KT-GALLNVLNF--------HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELK-ETGGSSI  197 (425)
T ss_dssp             TSCEEEEE-TT-SCEEEEECC--------CCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred             CCeEEEEe-CC-CCeeeeccC--------CCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeecc-ccCccce
Confidence            99999999 33 677777877        9999999999999999999999999999999999998888776 333    


Q ss_pred             -----------eecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEE--Eec-ceeeeeccCCCCce
Q 005459          353 -----------ISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTY  415 (696)
Q Consensus       353 -----------v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~  415 (696)
                                 +.++.|+|++    . ++++.   .+.+|+..+++.+....+|...+..  +++ ++.+++++.|+.++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  272 (425)
T 1r5m_A          198 NAENHSGDGSLGVDVEWVDDD----K-FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLR  272 (425)
T ss_dssp             --------CCCBSCCEEEETT----E-EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             eeccccCCcceeeEEEEcCCC----E-EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence                       8889998875    4 44443   8999999999888888888888844  454 78899999999999


Q ss_pred             eeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccce
Q 005459          416 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQE  494 (696)
Q Consensus       416 ~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e  494 (696)
                      +|++..+..                    ...+.+|..+|.+++|+|+| ++++++.||.+ +||+.+++.....   ..
T Consensus       273 i~d~~~~~~--------------------~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~---~~  328 (425)
T 1r5m_A          273 IWHGGNGNS--------------------QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS---IV  328 (425)
T ss_dssp             EECSSSBSC--------------------SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE---EC
T ss_pred             EEECCCCcc--------------------ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec---cc
Confidence            999876654                    45667899999999999999 99999999999 9999887633211   11


Q ss_pred             eeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCC---cc--------------ceeEEeecC--C-cc--EEEE
Q 005459          495 QKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLD---QS--------------SLLCRKSLL--A-KP--IVMD  550 (696)
Q Consensus       495 ~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~---~~--------------~~~~~~~~~--~-~~--l~~~  550 (696)
                      ....+..++|.  ++.++++     +.+..|++|+.....   ..              ..+......  . ++  +.++
T Consensus       329 ~~~~i~~~~~s~~~~~l~~~-----~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  403 (425)
T 1r5m_A          329 DGVPIFAGRISQDGQKYAVA-----FMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN  403 (425)
T ss_dssp             TTCCEEEEEECTTSSEEEEE-----ETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC
T ss_pred             CCccEEEEEEcCCCCEEEEE-----ECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc
Confidence            12246788887  4566665     234689999875111   00              022332222  1 22  4566


Q ss_pred             ccCCEEEEEEcCceEEEEEEE
Q 005459          551 VYEDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       551 ~~~~~llv~~~d~~~~l~~~~  571 (696)
                      +.+.+|++++.|+.+++|+++
T Consensus       404 ~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          404 CAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             TTSSEEEEEESSSCCEEEECC
T ss_pred             CCCceEEEEecCceEEEEeec
Confidence            788899999999999999863

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.96  E-value=2.8e-27  Score=274.42  Aligned_cols=297  Identities=18%  Similarity=0.177  Sum_probs=217.0

Q ss_pred             hcccccEEEEcCCC-cEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCC
Q 005459           66 REGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDN  142 (696)
Q Consensus        66 ~~G~~~~v~wsPDg-~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~  142 (696)
                      |.+.+.+++|+||+ ++|++++.||.|++|++........        .          ....+.++...|.  ++++++
T Consensus       381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------~----------~~~~~~~h~~~v~~v~~s~~g  442 (694)
T 3dm0_A          381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------V----------AQRRLTGHSHFVEDVVLSSDG  442 (694)
T ss_dssp             CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------E----------EEEEEECCSSCEEEEEECTTS
T ss_pred             CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------c----------ccceecCCCCcEEEEEECCCC
Confidence            34678899999975 7999999999999999975432100        0          0011234444554  456788


Q ss_pred             CeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcce
Q 005459          143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL  222 (696)
Q Consensus       143 ~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  222 (696)
                      ..+++++.||.|++|+....  ...                                  ..+..|...|.++.       
T Consensus       443 ~~l~sgs~Dg~v~vwd~~~~--~~~----------------------------------~~~~~h~~~v~~~~-------  479 (694)
T 3dm0_A          443 QFALSGSWDGELRLWDLAAG--VST----------------------------------RRFVGHTKDVLSVA-------  479 (694)
T ss_dssp             SEEEEEETTSEEEEEETTTT--EEE----------------------------------EEEECCSSCEEEEE-------
T ss_pred             CEEEEEeCCCcEEEEECCCC--cce----------------------------------eEEeCCCCCEEEEE-------
Confidence            89999999999999654321  111                                  01123445566654       


Q ss_pred             EEEEEeCCcEEEEeeccCCceeeeeeeccee------cCCCCeEE-EEEcCCC--cEEEEEecCCeEEEEEccCCCceee
Q 005459          223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAVC-ASIAPEQ--QILAVGTRRGVVELYDLAESASLIR  293 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~v~-v~~sp~~--~~la~g~~dg~v~vw~~~~~~~~~~  293 (696)
                         ++|||+.+++++.|+++++||.......      .+|.+.+. ++|+|++  .+|++|+.||+|++||+++ .+...
T Consensus       480 ---~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~-~~~~~  555 (694)
T 3dm0_A          480 ---FSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN-CKLRS  555 (694)
T ss_dssp             ---ECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-CCEEE
T ss_pred             ---EeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC-CcEEE
Confidence               7889999999999999999996433211      46777776 9999986  6899999999999999988 77788


Q ss_pred             EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459          294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT  373 (696)
Q Consensus       294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~  373 (696)
                      ++.+        |.+.|++++|+|||++|++|+.||+|++||+.+++.+.++..+  ..+.+++|+|++    ..++++.
T Consensus       556 ~~~~--------h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~----~~l~~~~  621 (694)
T 3dm0_A          556 TLAG--------HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN--SVIHALCFSPNR----YWLCAAT  621 (694)
T ss_dssp             EECC--------CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS--SCEEEEEECSSS----SEEEEEE
T ss_pred             EEcC--------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC--CcEEEEEEcCCC----cEEEEEc
Confidence            8888        9999999999999999999999999999999999988887654  569999999997    6666655


Q ss_pred             --eeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecC
Q 005459          374 --SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ  451 (696)
Q Consensus       374 --~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  451 (696)
                        .+++|+.++++++.....+......        ..  +        ..                      -+.....+
T Consensus       622 ~~~i~iwd~~~~~~~~~~~~~~~~~~~--------~~--~--------~~----------------------~~~~~~~~  661 (694)
T 3dm0_A          622 EHGIKIWDLESKSIVEDLKVDLKAEAE--------KA--D--------NS----------------------GPAATKRK  661 (694)
T ss_dssp             TTEEEEEETTTTEEEEEECCCCC--------------------------------------------------------C
T ss_pred             CCCEEEEECCCCCChhhhccccccccc--------cc--c--------cc----------------------ccccCCce
Confidence              8899999988887766443211000        00  0        00                      01111122


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459          452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIR  481 (696)
Q Consensus       452 ~~~I~~va~s~dG~~la~ag~dG~i-~w~~~  481 (696)
                      .-.+.+++|||||++|++|+.||.+ +|++.
T Consensus       662 ~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          662 VIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             eEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            3357899999999999999999999 99975

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9e-29  Score=267.52  Aligned_cols=308  Identities=12%  Similarity=0.091  Sum_probs=232.2

Q ss_pred             EEEEeCCc-EEEEe----------eccCCceeeeeeecce---e--cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEcc
Q 005459          224 FVLYSNGQ-LMSCS----------VSKKGLKLAEFIKIDK---E--LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLA  286 (696)
Q Consensus       224 ~~~s~dG~-~~~~~----------~~d~~~~~~~~~~~~~---~--~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~  286 (696)
                      ++++|||+ +++++          +.|+++++|+...++.   .  ..|...+. ++|+|++++||+|+.||.|++|++.
T Consensus        18 ~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~   97 (416)
T 2pm9_A           18 FAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTN   97 (416)
T ss_dssp             CCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCS
T ss_pred             EeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecc
Confidence            34677876 77777          7889999999876542   1  45777776 9999999999999999999999998


Q ss_pred             CC---CceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEcCCcEEEEEccCCe------eEEEe---ecccccce
Q 005459          287 ES---ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCR------LMSTI---RQISLSSI  353 (696)
Q Consensus       287 ~~---~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~Dg~v~vW~~~~~~------~~~~l---~~~~~~~v  353 (696)
                      ..   ...+..+..        |.++|.+++|+|| +++|++|+.|+.|++||+.++.      ....+   .+| ...|
T Consensus        98 ~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v  168 (416)
T 2pm9_A           98 EANNAINSMARFSN--------HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS-VDEV  168 (416)
T ss_dssp             STTSCCCEEEECCC--------SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS-SCCC
T ss_pred             cccccccchhhccC--------CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC-CCCe
Confidence            61   245666666        9999999999998 8999999999999999998775      32222   445 6789


Q ss_pred             ecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCC------cceE--EEEec-c-eeeeeccCCC---Cceee
Q 005459          354 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS------SERV--LIFSF-G-KCCLNRGVSG---MTYAR  417 (696)
Q Consensus       354 ~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~------~~~v--~~~~~-~-~~~~s~~~d~---~~~~w  417 (696)
                      .+++|+|++.   ..++++.   .+.+|+.++++.+.....+      ...+  +++++ + ..+++++.|+   .+++|
T Consensus       169 ~~~~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~  245 (416)
T 2pm9_A          169 ISLAWNQSLA---HVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW  245 (416)
T ss_dssp             CEEEECSSCT---TEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred             eEEEeCCCCC---cEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence            9999999831   6677765   8999999999988888765      5667  44555 3 5788999998   99999


Q ss_pred             eeeecCCeEEEEecCCCCcceeEEeecCeeee-cCCCceEEEEEcC-CCCEEEEEeCCccE-EEEccCCceEe-cCCccc
Q 005459          418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQKKWRV-FGDITQ  493 (696)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~I~~va~s~-dG~~la~ag~dG~i-~w~~~sg~w~~-f~~~~~  493 (696)
                      ++..+..                   ....+. +|..+|.+++|+| +|++|++++.||.+ +||+.+++... +.    
T Consensus       246 d~~~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~----  302 (416)
T 2pm9_A          246 DLRNANT-------------------PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP----  302 (416)
T ss_dssp             ETTSTTS-------------------CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE----
T ss_pred             eCCCCCC-------------------CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec----
Confidence            9877644                   234566 7999999999999 99999999999999 99999875321 11    


Q ss_pred             eeeeEEEeEeeeC---cEEEEEEeecCCCeEEEEEeeCCCCCcccee----------------E------E---------
Q 005459          494 EQKIQSKGLLWLG---KIIVVCNYIDSSNTYELLFYPRYHLDQSSLL----------------C------R---------  539 (696)
Q Consensus       494 e~~~~v~~~~w~~---~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~----------------~------~---------  539 (696)
                      .+.-.+..++|.+   ..++++     +.+..|++|+..........                +      .         
T Consensus       303 ~~~~~v~~~~~s~~~~~~l~s~-----~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (416)
T 2pm9_A          303 ARGNWCFKTKFAPEAPDLFACA-----SFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQ  377 (416)
T ss_dssp             CSSSCCCCEEECTTCTTEEEEC-----CSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCC
T ss_pred             CCCCceEEEEECCCCCCEEEEE-----ecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccccccc
Confidence            1122366889975   355554     45578999998621111000                0      0         


Q ss_pred             ----eecCCccEEEEccCCEEEEEEcCceEEEEEEE
Q 005459          540 ----KSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       540 ----~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~  571 (696)
                          +.-+...+.+++++.+|++++.|+.++||+++
T Consensus       378 ~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          378 APTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPK  413 (416)
T ss_dssp             CCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCC
T ss_pred             CCccccCCccceEEeeCCeEEEEeCCCCeEEEEEec
Confidence                00111136889999999998999999999865

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.96  E-value=2.4e-28  Score=267.11  Aligned_cols=302  Identities=13%  Similarity=0.097  Sum_probs=200.9

Q ss_pred             ccccEEEEcC-CCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--ee-CCC
Q 005459           68 GENLQAVWSP-DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VS-DNK  143 (696)
Q Consensus        68 G~~~~v~wsP-Dg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~-~~~  143 (696)
                      ..+++++|+| ++++||+|+.||.|+|||+..+......                     .+.++...|+++  .+ +++
T Consensus       120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~---------------------~~~gH~~~V~~l~f~p~~~~  178 (435)
T 4e54_B          120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI---------------------KGIGAGGSITGLKFNPLNTN  178 (435)
T ss_dssp             SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE---------------------CCCSSSCCCCEEEECSSCTT
T ss_pred             CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE---------------------EccCCCCCEEEEEEeCCCCC
Confidence            4578999999 6779999999999999998755432111                     122344455554  33 467


Q ss_pred             eEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceE
Q 005459          144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL  223 (696)
Q Consensus       144 ~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  223 (696)
                      .|++++.||+|++|+.++.......                                  ........+.+          
T Consensus       179 ~l~s~s~D~~v~iwd~~~~~~~~~~----------------------------------~~~~~~~~~~~----------  214 (435)
T 4e54_B          179 QFYASSMEGTTRLQDFKGNILRVFA----------------------------------SSDTINIWFCS----------  214 (435)
T ss_dssp             EEEEECSSSCEEEEETTSCEEEEEE----------------------------------CCSSCSCCCCC----------
T ss_pred             EEEEEeCCCEEEEeeccCCceeEEe----------------------------------ccCCCCccEEE----------
Confidence            8999999999999765432211110                                  00001111222          


Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecc--eecCCCCeEE-EEEcCCCc-EEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKID--KELGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~v~-v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      +.+++||+++++++.|+++++||.....  .+.+|...|. ++|+|+++ +||+|+.||+|++||++. .+....+..  
T Consensus       215 ~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~-~~~~~~~~~--  291 (435)
T 4e54_B          215 LDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ-VRGKASFLY--  291 (435)
T ss_dssp             EEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTT-CCSSSCCSB--
T ss_pred             EEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccc-ccccceEEE--
Confidence            4578999999999999999999975432  2367888887 99999876 899999999999999987 332222211  


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEc
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWD  379 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~  379 (696)
                         ..+|.++|++++|+|||++|++|+.||+|++||+..+.+...+..|.....             ..+.  .....|.
T Consensus       292 ---~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~~~  353 (435)
T 4e54_B          292 ---SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF-------------QHLT--PIKAAWH  353 (435)
T ss_dssp             ---CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCC-------------SSSC--CCBCEEC
T ss_pred             ---eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccc-------------ccce--eEEEEEc
Confidence               113999999999999999999999999999999998887777765521100             0000  1112344


Q ss_pred             CCCceEEEEecCCcceEEEEec-ce-eeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEE
Q 005459          380 EYGYRLYAIEEGSSERVLIFSF-GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH  457 (696)
Q Consensus       380 ~~~~~l~~~~~~~~~~v~~~~~-~~-~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~  457 (696)
                      +.+..+...          +.. +. .+.++..++++++|+..++...                   ...+.+|...|.+
T Consensus       354 ~~~~~~~~~----------~~~d~~~~~~~~~~~~~i~iwd~~~g~~~-------------------~~l~~~~~~~v~s  404 (435)
T 4e54_B          354 PRYNLIVVG----------RYPDPNFKSCTPYELRTIDVFDGNSGKMM-------------------CQLYDPESSGISS  404 (435)
T ss_dssp             SSSSCEEEE----------CCCCTTSCCSSTTCCCCEEEECSSSCCEE-------------------EEECCSSCCCCCC
T ss_pred             CCCCEEEEE----------EcCCCCeEEEEecCCCEEEEEECCCCcEE-------------------EEEeCCCCCcEEE
Confidence            333222211          111 22 2344555678899997766541                   1223467888888


Q ss_pred             E-EEcCCCCEEEEEeCCccE-EEEccCCce
Q 005459          458 V-AASKDGMFLAVAGLHGLI-LYDIRQKKW  485 (696)
Q Consensus       458 v-a~s~dG~~la~ag~dG~i-~w~~~sg~w  485 (696)
                      + +|+|||++||+|+ |+.+ +|+++++|-
T Consensus       405 ~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          405 LNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             EEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             EEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            7 6999999999887 7788 999998864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.96  E-value=3e-27  Score=253.28  Aligned_cols=294  Identities=14%  Similarity=0.103  Sum_probs=208.0

Q ss_pred             cccccEEEEcCCC-cEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--ee-CC
Q 005459           67 EGENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VS-DN  142 (696)
Q Consensus        67 ~G~~~~v~wsPDg-~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~-~~  142 (696)
                      .+.+.+++|+||+ ++||+++.||.|++|++.........                     ...++...|.++  .+ ++
T Consensus        73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------------------~~~~h~~~v~~~~~~~~~~  131 (383)
T 3ei3_B           73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI---------------------QGMGPGDAITGMKFNQFNT  131 (383)
T ss_dssp             SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE---------------------CCCSTTCBEEEEEEETTEE
T ss_pred             CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee---------------------ecCCcCCceeEEEeCCCCC
Confidence            4678899999999 99999999999999999754321111                     012234455554  44 45


Q ss_pred             CeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcce
Q 005459          143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL  222 (696)
Q Consensus       143 ~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  222 (696)
                      ..+++++.||.|++|+..+.......                                  ....+...|.++.       
T Consensus       132 ~~l~s~~~d~~i~iwd~~~~~~~~~~----------------------------------~~~~~~~~v~~~~-------  170 (383)
T 3ei3_B          132 NQLFVSSIRGATTLRDFSGSVIQVFA----------------------------------KTDSWDYWYCCVD-------  170 (383)
T ss_dssp             EEEEEEETTTEEEEEETTSCEEEEEE----------------------------------CCCCSSCCEEEEE-------
T ss_pred             CEEEEEeCCCEEEEEECCCCceEEEe----------------------------------ccCCCCCCeEEEE-------
Confidence            78899999999998766532211110                                  0111234466554       


Q ss_pred             EEEEEeCCcEEEEeeccCCceeeeeeecc--eecCCCCeEE-EEEcCCCc-EEEEEecCCeEEEEEccCC---CceeeEE
Q 005459          223 LFVLYSNGQLMSCSVSKKGLKLAEFIKID--KELGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAES---ASLIRTV  295 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~v~-v~~sp~~~-~la~g~~dg~v~vw~~~~~---~~~~~~~  295 (696)
                         ++|+|+.+++++.|+++++||.....  .+.+|...+. ++|+|+++ +|++|+.||+|++||+.+.   ...+..+
T Consensus       171 ---~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  247 (383)
T 3ei3_B          171 ---VSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM  247 (383)
T ss_dssp             ---EETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE
T ss_pred             ---ECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe
Confidence               78899999999999999999974221  2267888887 99999999 9999999999999999862   2233333


Q ss_pred             eeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceeccee
Q 005459          296 SLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTS  374 (696)
Q Consensus       296 ~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~  374 (696)
                       .        |.+.|.+++|+| ||++|++++.|+.|++||+.++....++.+|... ...    ..     ..    ..
T Consensus       248 -~--------~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~----~~-----~~----~~  304 (383)
T 3ei3_B          248 -P--------HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHR-QFQ----HL-----TP----IK  304 (383)
T ss_dssp             -E--------CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBC-CCT----TS-----CC----CC
T ss_pred             -c--------CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccc-ccc----cc-----cc----eE
Confidence             5        899999999999 9999999999999999999988777777665111 000    00     00    11


Q ss_pred             eEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec--C
Q 005459          375 MMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS--Q  451 (696)
Q Consensus       375 ~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~--~  451 (696)
                       ..|.+.+..+.          ..+++ ++.  +++.|+++++|++.+++.                    ...+.+  |
T Consensus       305 -~~~~p~~~~~~----------~~~s~dg~~--s~s~d~~i~iwd~~~~~~--------------------~~~l~~~~~  351 (383)
T 3ei3_B          305 -ATWHPMYDLIV----------AGRYPDDQL--LLNDKRTIDIYDANSGGL--------------------VHQLRDPNA  351 (383)
T ss_dssp             -CEECSSSSEEE----------EECBCCTTT--CTTCCCCEEEEETTTCCE--------------------EEEECBTTB
T ss_pred             -EeccCCCCceE----------EEecCCccc--ccCCCCeEEEEecCCCce--------------------eeeecCCCC
Confidence             24544322211          33444 444  889999999999876654                    334444  5


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459          452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       452 ~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s  482 (696)
                      ...+..++|+|||++||+|+ ||.+ +||+++
T Consensus       352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            67788889999999999998 8999 999864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.6e-28  Score=264.75  Aligned_cols=241  Identities=14%  Similarity=0.123  Sum_probs=174.2

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecceecCCCC-----eEE-EEEcCCCcEEEEEecCCeEEEEEccCCCc-------
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGD-----AVC-ASIAPEQQILAVGTRRGVVELYDLAESAS-------  290 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~-----~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~-------  290 (696)
                      ++++|||+.+++++.|+++++|+....-....|..     .+. ++|||||++||+|+.||+|++||+.+ +.       
T Consensus        91 vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~-~~l~~~~~i  169 (588)
T 2j04_A           91 CKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK-NSENTPEFY  169 (588)
T ss_dssp             EEECSSSSCEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC-CTTTCCCCE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC-Cccccccce
Confidence            34788999999999999999998543111122443     365 99999999999999999999999987 43       


Q ss_pred             eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee---EEEeecccccceecccccCCCCCCcc
Q 005459          291 LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDCKYE  367 (696)
Q Consensus       291 ~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~---~~~l~~~~~~~v~~~~~sp~~~~~~~  367 (696)
                      .+++++..    ..+|.+.|.+++|||||  |++++.|++|++|++.++..   ..+++.++...|.+++|+  +    .
T Consensus       170 ~l~ti~~~----~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g----~  237 (588)
T 2j04_A          170 FESSIRLS----DAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D----Y  237 (588)
T ss_dssp             EEEEEECS----CTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T----T
T ss_pred             eeeeeecc----cccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C----C
Confidence            25666431    11388999999999999  88999999999999998873   357754447889999998  4    6


Q ss_pred             ceecce--eeEEEcCCCceEEEEecCCcceE--EEE--ec-ceeeeeccCCCCceeeeeeecCCeEEEEecCC------C
Q 005459          368 PLMSGT--SMMQWDEYGYRLYAIEEGSSERV--LIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED------T  434 (696)
Q Consensus       368 ~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v--~~~--~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~------~  434 (696)
                      .+++++  ++++|+..++++.....+|...+  +.|  ++ ++.+++++.||+ ++|...    .+-+.....      .
T Consensus       238 ~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d----~~~~spd~~l~a~~d~  312 (588)
T 2j04_A          238 KVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED----ELHVTADNIIAPYLEK  312 (588)
T ss_dssp             EEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----SEEEECCCSSHHHHHH
T ss_pred             EEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----cEEECCCceEEEEcCC
Confidence            666665  89999999998855555788887  677  66 778999999999 999864    122111111      1


Q ss_pred             CcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC--CccEEEEccC
Q 005459          435 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL--HGLILYDIRQ  482 (696)
Q Consensus       435 ~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~--dG~i~w~~~s  482 (696)
                      ...+|+...-+.....++..|++++|||||+.+|++++  ++.+.|.+.+
T Consensus       313 ~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~i~~~~~~y~i~s  362 (588)
T 2j04_A          313 KFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYDMERVAFKYKIAS  362 (588)
T ss_dssp             HHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEEEECSSCCCCCSS
T ss_pred             EEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEeccCceeEEeecc
Confidence            11245331111112233667999999999999999986  3333555443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.96  E-value=4.4e-27  Score=255.79  Aligned_cols=279  Identities=19%  Similarity=0.246  Sum_probs=199.3

Q ss_pred             EEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCccc
Q 005459           24 IIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI  103 (696)
Q Consensus        24 ~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~  103 (696)
                      .+.+|+++ +||++.|++|+|||.. .+..+..+.-.    .+.+.+.+++|+|||++||+++.||.|+||+++.+....
T Consensus       110 ~l~wS~~n-~lAvgld~tV~lWd~~-tg~~~~~~~~~----~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          110 LVDWSSGN-VLAVALDNSVYLWSAS-SGDILQLLQME----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             CEEECTTS-EEEEEETTEEEEEETT-TCCEEEEEECC----STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             eEEECCCC-EEEEEeCCEEEEEECC-CCCEEEEEEec----CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence            46778765 8888889999999996 55444333211    123568899999999999999999999999986432110


Q ss_pred             ccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCccccccc
Q 005459          104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSH  183 (696)
Q Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~  183 (696)
                                             .+.++...+.+++.++..+++++.++.+..+++.....                   
T Consensus       184 -----------------------~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~-------------------  221 (420)
T 4gga_A          184 -----------------------NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH-------------------  221 (420)
T ss_dssp             -----------------------EECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC-------------------
T ss_pred             -----------------------EEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccce-------------------
Confidence                                   01234445666666777777777777776543221000                   


Q ss_pred             ccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecceecCCCCeEE-E
Q 005459          184 HFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-A  262 (696)
Q Consensus       184 ~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~-v  262 (696)
                                                .+                                       ..+.+|...++ +
T Consensus       222 --------------------------~~---------------------------------------~~~~~h~~~~~~~  236 (420)
T 4gga_A          222 --------------------------HV---------------------------------------ATLSGHSQEVCGL  236 (420)
T ss_dssp             --------------------------EE---------------------------------------EEEECCSSCEEEE
T ss_pred             --------------------------ee---------------------------------------EEecccccceeee
Confidence                                      00                                       01135677777 9


Q ss_pred             EEcCCCcEEEEEecCCeEEEEEccCCC---ceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEE--EEcCCcEEEEEc
Q 005459          263 SIAPEQQILAVGTRRGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAV--GWKSRGLTVWSV  336 (696)
Q Consensus       263 ~~sp~~~~la~g~~dg~v~vw~~~~~~---~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~las--g~~Dg~v~vW~~  336 (696)
                      .++|+++++++++.||.|++|+.....   ..+.....        |.+.|.+++|+|++. .+++  |+.|++|++||+
T Consensus       237 ~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~--------~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~  308 (420)
T 4gga_A          237 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ--------HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV  308 (420)
T ss_dssp             EECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECC--------CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred             eecCCCCeeeeeeccccceEEeeccccccceeeeeecc--------cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence            999999999999999999999998632   12344455        999999999999655 5555  457999999999


Q ss_pred             cCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCcee
Q 005459          337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYA  416 (696)
Q Consensus       337 ~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~  416 (696)
                      .++.+...+..+  ..+.++.|+|++                    .+++                  +++++.|+.+++
T Consensus       309 ~t~~~~~~~~~~--~~v~~~~~~~~~--------------------~~lv------------------~~sg~~d~~I~i  348 (420)
T 4gga_A          309 CSGACLSAVDAH--SQVCSILWSPHY--------------------KELI------------------SGHGFAQNQLVI  348 (420)
T ss_dssp             TTTEEEEEEECS--SCEEEEEEETTT--------------------TEEE------------------EEECTTTCCEEE
T ss_pred             Cccccceeeccc--cceeeeeecCCC--------------------CeEE------------------EEEecCCCEEEE
Confidence            999988887765  234444444443                    2221                  123457888999


Q ss_pred             eeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC
Q 005459          417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK  483 (696)
Q Consensus       417 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg  483 (696)
                      |++.++..                    ...+.+|..+|.+++|||||++||+||.||++ +||+...
T Consensus       349 wd~~~~~~--------------------v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          349 WKYPTMAK--------------------VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             EETTTCCE--------------------EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred             EECCCCcE--------------------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            98766554                    45678999999999999999999999999999 9998653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.8e-29  Score=276.40  Aligned_cols=306  Identities=7%  Similarity=-0.014  Sum_probs=204.1

Q ss_pred             EeCCcEEEEeeccCCceeeeeeecce-------ecCCCCeEE-EEEcCC------CcEEEEEecCCeEEEEEccCCCc--
Q 005459          227 YSNGQLMSCSVSKKGLKLAEFIKIDK-------ELGSGDAVC-ASIAPE------QQILAVGTRRGVVELYDLAESAS--  290 (696)
Q Consensus       227 s~dG~~~~~~~~d~~~~~~~~~~~~~-------~~~~~~~v~-v~~sp~------~~~la~g~~dg~v~vw~~~~~~~--  290 (696)
                      +|+++.+++++.|+++++|+....+.       +.+|.+.+. ++|+|+      +.+||+|+.||+|++||+.....  
T Consensus       170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~  249 (524)
T 2j04_B          170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV  249 (524)
T ss_dssp             ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred             chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence            57788899999999999999865542       245667777 999997      57999999999999999976211  


Q ss_pred             --------eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC-eeEEEeecccccceecc--ccc
Q 005459          291 --------LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSP--IVK  359 (696)
Q Consensus       291 --------~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~-~~~~~l~~~~~~~v~~~--~~s  359 (696)
                              +..++.+        |.+.|++++|+|++ .||+|+.||+|++||+.++ ....++.+| ...|.++  .|+
T Consensus       250 ~~~~~~~~p~~~l~~--------h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H-~~~V~sv~~~~s  319 (524)
T 2j04_B          250 HVFKMCEKPSLTLSL--------ADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVH-DSYILSVSTAYS  319 (524)
T ss_dssp             SEEECCCSCSEEECC--------TTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECS-SSCEEEEEEECC
T ss_pred             ccceeecCceEEEEc--------CCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecc-cccEEEEEEEcC
Confidence                    1234555        99999999999975 8999999999999999865 445567777 7789998  577


Q ss_pred             CCCCCCccceecce---eeEEEcCCCceEEEEecCCcc--eE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEec
Q 005459          360 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE--RV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQS  431 (696)
Q Consensus       360 p~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~--~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~  431 (696)
                      |++.   ..++||+   ++++||.+++++.....+|..  .|  ++|++ ++.+++++.|+++++|++..+..       
T Consensus       320 ~~g~---~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~-------  389 (524)
T 2j04_B          320 DFED---TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA-------  389 (524)
T ss_dssp             TTSC---CEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC-------
T ss_pred             CCCC---eEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc-------
Confidence            7631   5678887   899999988766555444432  24  77888 88899999999999999876654       


Q ss_pred             CCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCcc-ceeeeEEEeEeeeCcE-
Q 005459          432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDIT-QEQKIQSKGLLWLGKI-  508 (696)
Q Consensus       432 ~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~-~e~~~~v~~~~w~~~~-  508 (696)
                                   +.++.+|..+|.+++|||+|++||+|+.||++ +||+..+.+..+.... ......+..++|.++. 
T Consensus       390 -------------~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~  456 (524)
T 2j04_B          390 -------------VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDD  456 (524)
T ss_dssp             -------------CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSC
T ss_pred             -------------ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCC
Confidence                         45677899999999999999999999999999 9998765322111000 0111123455554322 


Q ss_pred             EEEEEeecCCCeEEEEEeeCC-CCCccceeEEeecCCccEEEEccCC---EEEEEEcCceEEEEEEEE
Q 005459          509 IVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSLLAKPIVMDVYED---YILVTYRPFDVHIFHVKL  572 (696)
Q Consensus       509 lv~~~~~~~~~~~~lr~y~~~-~l~~~~~~~~~~~~~~~l~~~~~~~---~llv~~~d~~~~l~~~~~  572 (696)
                      .+..     .+++.+..|+.. .+......|...+.+  +.+++.+.   .++.++.++.++||.+..
T Consensus       457 ~~~~-----~~~~~~~~~~~~g~~~~~l~gh~~~V~~--Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          457 KYRI-----DSSYEVYPLTVNDVSKAKIDAHGINITC--TKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             EEEE-----CCCCCCCC-------------CCCSCCC--EEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             eEEc-----cCCceecccccCCcceeeecCCCceEEE--EECCCCCCccHHHHhhccCceEEEEEccc
Confidence            1111     111222222211 111111223344544  88998754   778889899999998764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.96  E-value=8.3e-27  Score=244.61  Aligned_cols=277  Identities=15%  Similarity=0.171  Sum_probs=208.1

Q ss_pred             ecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCC----ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE
Q 005459          253 ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESA----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW  326 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~----~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~  326 (696)
                      +.||.+.|. ++|+|+ +++||+|+.||+|+|||+....    .+.+++.+        |.++|.+++|+|||++|++|+
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~--------h~~~V~~~~~s~dg~~l~s~~  105 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG--------HSHFVSDVVISSDGQFALSGS  105 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC--------CSSCEEEEEECTTSSEEEEEE
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC--------CCCCEEEEEECCCCCEEEEEc
Confidence            478999998 999998 6899999999999999997632    23456666        999999999999999999999


Q ss_pred             cCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEE-EecCCcceEE--EEe
Q 005459          327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYA-IEEGSSERVL--IFS  400 (696)
Q Consensus       327 ~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~-~~~~~~~~v~--~~~  400 (696)
                      .|+.|++|+............+ ...+....++|++    ..+++|+   .+++|+..+..... ...+|...+.  .+.
T Consensus       106 ~d~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~  180 (340)
T 4aow_A          106 WDGTLRLWDLTTGTTTRRFVGH-TKDVLSVAFSSDN----RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFS  180 (340)
T ss_dssp             TTSEEEEEETTTTEEEEEEECC-SSCEEEEEECTTS----SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEEC
T ss_pred             ccccceEEeecccceeeeecCC-CCceeEEEEeecC----ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEc
Confidence            9999999999998887777766 5567778888887    7888876   88999987665543 4456777774  444


Q ss_pred             c---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-
Q 005459          401 F---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-  476 (696)
Q Consensus       401 ~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-  476 (696)
                      +   ...+++++.|+++++|++..+..                    ...+.+|..+|++++|+|||++||+|+.||.+ 
T Consensus       181 ~~~~~~~~~s~~~d~~i~i~d~~~~~~--------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~  240 (340)
T 4aow_A          181 PNSSNPIIVSCGWDKLVKVWNLANCKL--------------------KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAM  240 (340)
T ss_dssp             SCSSSCEEEEEETTSCEEEEETTTTEE--------------------EEEECCCSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             cCCCCcEEEEEcCCCEEEEEECCCCce--------------------eeEecCCCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence            4   35678999999999999765543                    45677899999999999999999999999999 


Q ss_pred             EEEccCCceEecCCccceeeeEEEeEeeeCc-EEEEEEeecCCCeEEEEEeeCCCC------CccceeEE-eecCCcc--
Q 005459          477 LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK-IIVVCNYIDSSNTYELLFYPRYHL------DQSSLLCR-KSLLAKP--  546 (696)
Q Consensus       477 ~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~-~lv~~~~~~~~~~~~lr~y~~~~l------~~~~~~~~-~~~~~~~--  546 (696)
                      +||+.+++-....    +..-.+..++|.++ .+++++     .+..|++|+.+..      ........ ...+..+  
T Consensus       241 iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~  311 (340)
T 4aow_A          241 LWDLNEGKHLYTL----DGGDIINALCFSPNRYWLCAA-----TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTS  311 (340)
T ss_dssp             EEETTTTEEEEEE----ECSSCEEEEEECSSSSEEEEE-----ETTEEEEEETTTTEEEEEECCC-------CCCCCEEE
T ss_pred             EEEeccCceeeee----cCCceEEeeecCCCCceeecc-----CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEE
Confidence            9999987632211    11113667777644 444442     2357999987511      00000000 0111222  


Q ss_pred             EEEEccCCEEEEEEcCceEEEEEEE
Q 005459          547 IVMDVYEDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       547 l~~~~~~~~llv~~~d~~~~l~~~~  571 (696)
                      +.+++++++|++++.|+.|+||+++
T Consensus       312 l~~s~dg~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          312 LAWSADGQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEeCC
Confidence            5667889999999999999999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=5e-27  Score=248.67  Aligned_cols=237  Identities=14%  Similarity=0.133  Sum_probs=172.7

Q ss_pred             EEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEE-EEEcCCCcEEEEEecC-----CeEEEEEccCCCc-------
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAPEQQILAVGTRR-----GVVELYDLAESAS-------  290 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~-v~~sp~~~~la~g~~d-----g~v~vw~~~~~~~-------  290 (696)
                      ++|||+.+++++.|+++++|+...++..  ..+...+. ++|+|++++|++++.+     |.|++|++.....       
T Consensus        82 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~  161 (369)
T 3zwl_B           82 VDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKV  161 (369)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence            4556666666666666666666544332  12444555 9999999999999999     9999999987321       


Q ss_pred             ---eeeEEeeccCCCCCCCCC--CeEEEEECCCCCeEEEEEcCCcEEEEEccC-CeeEEEeecccccceecccccCCCCC
Q 005459          291 ---LIRTVSLYDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDC  364 (696)
Q Consensus       291 ---~~~~~~~~~~~~~~~h~g--~V~~l~~spdg~~lasg~~Dg~v~vW~~~~-~~~~~~l~~~~~~~v~~~~~sp~~~~  364 (696)
                         ....+..        |.+  .+.+++|+|||+.|++|+.||.|++||+.. ...+..+..| ...|.+++|+|++  
T Consensus       162 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~--  230 (369)
T 3zwl_B          162 SEEPIHKIIT--------HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH-EKSISDMQFSPDL--  230 (369)
T ss_dssp             CSSCSEEEEC--------CTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC-SSCEEEEEECTTS--
T ss_pred             ccceeeeccC--------CcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC-CCceeEEEECCCC--
Confidence               2233333        666  999999999999999999999999999998 7888888887 6789999999998  


Q ss_pred             Cccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCC--eEEEEecCCCCc
Q 005459          365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGED--RLLVVQSEDTDE  436 (696)
Q Consensus       365 ~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~--~~~~~~~~~~~~  436 (696)
                        ..+++++   .+.+|+..+++++.... +...+  ..+++ ++.+++++.++...++.......  .+.++....   
T Consensus       231 --~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~---  304 (369)
T 3zwl_B          231 --TYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF---  304 (369)
T ss_dssp             --SEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT---
T ss_pred             --CEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC---
Confidence              8888776   89999999998888776 44555  55666 88888888887433333222111  111111100   


Q ss_pred             ceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          437 LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       437 ~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                           .+....+.+|..+|.+++|+|||++||+++.||.+ +|++.++.
T Consensus       305 -----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          305 -----EEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             -----CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             -----CcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence                 01244667899999999999999999999999999 99998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.96  E-value=3.1e-26  Score=251.99  Aligned_cols=305  Identities=12%  Similarity=0.124  Sum_probs=239.8

Q ss_pred             eEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEE
Q 005459          134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW  213 (696)
Q Consensus       134 ~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~  213 (696)
                      .++++..+++.+++|+.||.|++|+...  ....                                  ..+..+...|.+
T Consensus       124 v~~~~~~~~~~l~sgs~dg~i~vwd~~~--~~~~----------------------------------~~~~~h~~~V~~  167 (464)
T 3v7d_B          124 VITCLQFEDNYVITGADDKMIRVYDSIN--KKFL----------------------------------LQLSGHDGGVWA  167 (464)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEETTT--TEEE----------------------------------EEECCCSSCEEE
T ss_pred             cEEEEEECCCEEEEEcCCCcEEEEECCC--CcEE----------------------------------EEEeCCCcCEEE
Confidence            3678888999999999999999965432  2111                                  012245566777


Q ss_pred             EEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEc--CCCcEEEEEecCCeEEEEEccC
Q 005459          214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIA--PEQQILAVGTRRGVVELYDLAE  287 (696)
Q Consensus       214 ~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~s--p~~~~la~g~~dg~v~vw~~~~  287 (696)
                      +.          +++++ .+++++.|+++++||..+++..   .+|...+. ++|+  +++++|++|+.||+|++||+.+
T Consensus       168 l~----------~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~  236 (464)
T 3v7d_B          168 LK----------YAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK  236 (464)
T ss_dssp             EE----------ECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCC
T ss_pred             EE----------EcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCC
Confidence            66          55666 7888999999999998766543   67888887 8888  6889999999999999999987


Q ss_pred             CCce-----------------------eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEE
Q 005459          288 SASL-----------------------IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST  344 (696)
Q Consensus       288 ~~~~-----------------------~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~  344 (696)
                       ...                       ...+.+        |...|.++  +|+++.|++|+.|+.|++||+.+++++.+
T Consensus       237 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~  305 (464)
T 3v7d_B          237 -ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG--------HMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYI  305 (464)
T ss_dssp             -CCCC------CCSSEEESCGGGCTTEEEEECC--------CSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             -CcccccccccCCcceEeeccCCCeEEEEEccC--------ccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence             322                       223334        88899887  68899999999999999999999999999


Q ss_pred             eecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeee
Q 005459          345 IRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVI  420 (696)
Q Consensus       345 l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~  420 (696)
                      +.+| ...|.+++|+|++    ..+++|+   ++++|+..+++++....+|...|..+.+ ++.+++++.|+++++|++.
T Consensus       306 ~~~~-~~~v~~~~~~~~~----~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~  380 (464)
T 3v7d_B          306 LSGH-TDRIYSTIYDHER----KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN  380 (464)
T ss_dssp             ECCC-SSCEEEEEEETTT----TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred             ecCC-CCCEEEEEEcCCC----CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECC
Confidence            9888 7789999999998    8888887   8999999999999999999999988877 7899999999999999987


Q ss_pred             ecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEE
Q 005459          421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQS  499 (696)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v  499 (696)
                      .+...                     ....+..++..++|+|+|+++++|+ ||.+ +||+.+++...-..  ......+
T Consensus       381 ~~~~~---------------------~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~--~~~~~~v  436 (464)
T 3v7d_B          381 DYSRK---------------------FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANI--LKDADQI  436 (464)
T ss_dssp             TCCEE---------------------EEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCT--TTTCSEE
T ss_pred             CCcee---------------------eeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhh--ccCCCcE
Confidence            65431                     1123566788899999999999999 8999 99999987432111  1223457


Q ss_pred             EeEeeeCcEEEEEEeecCCCeEEEEEee
Q 005459          500 KGLLWLGKIIVVCNYIDSSNTYELLFYP  527 (696)
Q Consensus       500 ~~~~w~~~~lv~~~~~~~~~~~~lr~y~  527 (696)
                      ..++|.++.+++++..  ++...+.+++
T Consensus       437 ~~v~~~~~~l~~~~~~--~g~~~i~~ld  462 (464)
T 3v7d_B          437 WSVNFKGKTLVAAVEK--DGQSFLEILD  462 (464)
T ss_dssp             EEEEEETTEEEEEEEE--TTEEEEEEEE
T ss_pred             EEEEecCCEEEEEEEe--CCeEEEEEee
Confidence            8899999999888554  3444555554

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.95  E-value=1.5e-27  Score=254.69  Aligned_cols=235  Identities=15%  Similarity=0.117  Sum_probs=184.7

Q ss_pred             EEEEEeCCcEEEEeeccCCceeeeeeec--ce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCc---eee
Q 005459          223 LFVLYSNGQLMSCSVSKKGLKLAEFIKI--DK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESAS---LIR  293 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~--~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~---~~~  293 (696)
                      .++++|||+++++++.|+++++|+....  +.   +.+|...+. ++|+|++++||+|+.||+|++||+.+ ++   ...
T Consensus        16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~-~~~~~~~~   94 (377)
T 3dwl_C           16 EHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP-DGTWKQTL   94 (377)
T ss_dssp             CCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-------CCCCEE
T ss_pred             EEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC-CCceeeee
Confidence            3558899999999999999999998865  22   267888887 99999999999999999999999987 44   344


Q ss_pred             EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe---eEEEeecccccceecccccCCCCCCcccee
Q 005459          294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLM  370 (696)
Q Consensus       294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~---~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~  370 (696)
                      .+..        |.+.|.+++|+|||+.|++|+.|+.|++||+.++.   +...+.+.+...|.+++|+|++    +.++
T Consensus        95 ~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~l~  162 (377)
T 3dwl_C           95 VLLR--------LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN----VLLA  162 (377)
T ss_dssp             ECCC--------CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS----SEEE
T ss_pred             Eecc--------cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC----CEEE
Confidence            4555        99999999999999999999999999999998876   4777877237889999999998    8888


Q ss_pred             cce---eeEEEcCC------------------CceEEEEecCCcceEE--EEec-ceeeeeccCCCCceeeeeeecCCeE
Q 005459          371 SGT---SMMQWDEY------------------GYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRL  426 (696)
Q Consensus       371 sg~---~~~~W~~~------------------~~~l~~~~~~~~~~v~--~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~  426 (696)
                      +|+   ++++|+..                  .++++..+ +|...|.  ++++ ++.+++++.|+++++|++..+....
T Consensus       163 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~  241 (377)
T 3dwl_C          163 AGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPP  241 (377)
T ss_dssp             EEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCE
T ss_pred             EEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcc
Confidence            887   79999985                  35566666 8888884  4555 8889999999999999988776410


Q ss_pred             EEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceEe
Q 005459          427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRV  487 (696)
Q Consensus       427 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~~  487 (696)
                                      .....+.+|..+|.+++|+|||++|++|+.++.++|+...+.|+.
T Consensus       242 ----------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~  286 (377)
T 3dwl_C          242 ----------------RALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAH  286 (377)
T ss_dssp             ----------------EECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CC
T ss_pred             ----------------eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEE
Confidence                            013466789999999999999999999998888888877555543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.95  E-value=2e-26  Score=267.17  Aligned_cols=273  Identities=14%  Similarity=0.156  Sum_probs=212.0

Q ss_pred             cCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCC----ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459          254 LGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESA----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK  327 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~----~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~  327 (696)
                      .+|.+.|. ++|+|+ +++||+|+.||+|++|++....    ...+.+.+        |.+.|.+++|+|||++|++|+.
T Consensus       379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~--------h~~~v~~v~~s~~g~~l~sgs~  450 (694)
T 3dm0_A          379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG--------HSHFVEDVVLSSDGQFALSGSW  450 (694)
T ss_dssp             ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC--------CSSCEEEEEECTTSSEEEEEET
T ss_pred             ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecC--------CCCcEEEEEECCCCCEEEEEeC
Confidence            68999988 999987 4799999999999999997632    23456677        9999999999999999999999


Q ss_pred             CCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEe---cCCcceEEEE--
Q 005459          328 SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE---EGSSERVLIF--  399 (696)
Q Consensus       328 Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~---~~~~~~v~~~--  399 (696)
                      ||+|++||+.++.+..++.+| ...|.+++|+|++    ..+++|+   ++++|+..+.......   .+|...|.++  
T Consensus       451 Dg~v~vwd~~~~~~~~~~~~h-~~~v~~~~~s~~~----~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  525 (694)
T 3dm0_A          451 DGELRLWDLAAGVSTRRFVGH-TKDVLSVAFSLDN----RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRF  525 (694)
T ss_dssp             TSEEEEEETTTTEEEEEEECC-SSCEEEEEECTTS----SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEE
T ss_pred             CCcEEEEECCCCcceeEEeCC-CCCEEEEEEeCCC----CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEE
Confidence            999999999999999999988 7789999999998    8899887   8999998776555443   3577778544  


Q ss_pred             ec-c--eeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE
Q 005459          400 SF-G--KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI  476 (696)
Q Consensus       400 ~~-~--~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i  476 (696)
                      ++ +  ..+++++.|+++++|++..+..                    ...+.+|..+|++++|+|||++||+|+.||.+
T Consensus       526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~--------------------~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i  585 (694)
T 3dm0_A          526 SPNTLQPTIVSASWDKTVKVWNLSNCKL--------------------RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVV  585 (694)
T ss_dssp             CSCSSSCEEEEEETTSCEEEEETTTCCE--------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSBC
T ss_pred             eCCCCcceEEEEeCCCeEEEEECCCCcE--------------------EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence            44 2  4689999999999999865443                    45677899999999999999999999999999


Q ss_pred             -EEEccCCceEecCCccceeeeEEEeEeeeCcE-EEEEEeecCCCeEEEEEeeCCCCCccceeEEeec------------
Q 005459          477 -LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKI-IVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSL------------  542 (696)
Q Consensus       477 -~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~-lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~------------  542 (696)
                       +||+.+++... .-   +..-.+..++|.++. +++++ .    +..|++|+.+.   .........            
T Consensus       586 ~iwd~~~~~~~~-~~---~~~~~v~~~~~sp~~~~l~~~-~----~~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~  653 (694)
T 3dm0_A          586 LLWDLAEGKKLY-SL---EANSVIHALCFSPNRYWLCAA-T----EHGIKIWDLES---KSIVEDLKVDLKAEAEKADNS  653 (694)
T ss_dssp             EEEETTTTEEEE-CC---BCSSCEEEEEECSSSSEEEEE-E----TTEEEEEETTT---TEEEEEECCCCC---------
T ss_pred             EEEECCCCceEE-Ee---cCCCcEEEEEEcCCCcEEEEE-c----CCCEEEEECCC---CCChhhhcccccccccccccc
Confidence             99999986432 11   112236788887543 33332 2    23599998751   111111100            


Q ss_pred             ----------CCccEEEEccCCEEEEEEcCceEEEEEEE
Q 005459          543 ----------LAKPIVMDVYEDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       543 ----------~~~~l~~~~~~~~llv~~~d~~~~l~~~~  571 (696)
                                ...-+.+++++.+|++++.|+.|++|++.
T Consensus       654 ~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          654 GPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             -------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence                      01125678899999999999999999864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.95  E-value=1.9e-26  Score=245.02  Aligned_cols=269  Identities=14%  Similarity=0.116  Sum_probs=214.4

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecc--e---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKID--K---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL  297 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~--~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~  297 (696)
                      +.++|||+.+++++.++.+++|+....+  .   +.+|...+. ++|+|++++||+|+.||+|++||+.+ ++....+..
T Consensus        14 ~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~   92 (372)
T 1k8k_C           14 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG-RTWKPTLVI   92 (372)
T ss_dssp             EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET-TEEEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC-CeeeeeEEe
Confidence            4578899999999999999999987653  2   267888887 99999999999999999999999987 554444432


Q ss_pred             ccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe---eEEEeecccccceecccccCCCCCCccceecce-
Q 005459          298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-  373 (696)
Q Consensus       298 ~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~---~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-  373 (696)
                      .      .|.+.|.+++|+|||++|++|+.|+.|++|++..+.   ....+...+...|.+++|+|++    ..+++|. 
T Consensus        93 ~------~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~  162 (372)
T 1k8k_C           93 L------RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS----VLLAAGSC  162 (372)
T ss_dssp             C------CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS----SEEEEEET
T ss_pred             e------cCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC----CEEEEEcC
Confidence            1      289999999999999999999999999999998765   2344434337789999999998    7888876 


Q ss_pred             --eeEEEcC------------------CCceEEEEecCCcceEEE--Eec-ceeeeeccCCCCceeeeeeecCCeEEEEe
Q 005459          374 --SMMQWDE------------------YGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQ  430 (696)
Q Consensus       374 --~~~~W~~------------------~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~  430 (696)
                        .+.+|+.                  ..++++....+|...+..  +++ ++.+++++.|+.+++|++..+..      
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~------  236 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA------  236 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE------
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce------
Confidence              8999994                  367888888888888854  444 77999999999999999877654      


Q ss_pred             cCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC--CceEecCCc----------------
Q 005459          431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ--KKWRVFGDI----------------  491 (696)
Q Consensus       431 ~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s--g~w~~f~~~----------------  491 (696)
                                    ...+..|..+|.+++|+|+|+++++| .||.+ +|++.+  ++|+.....                
T Consensus       237 --------------~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (372)
T 1k8k_C          237 --------------VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARER  301 (372)
T ss_dssp             --------------EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHH
T ss_pred             --------------eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhh
Confidence                          45667888899999999999999888 88888 999999  887653211                


Q ss_pred             --------------------cceeeeEEEeEeee-C-----cEEEEEEeecCCCeEEEEEeeCC
Q 005459          492 --------------------TQEQKIQSKGLLWL-G-----KIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       492 --------------------~~e~~~~v~~~~w~-~-----~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                                          ...+.-.|.+++|+ .     ..++++     +.+..|++|+..
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~-----~~Dg~i~~W~~~  360 (372)
T 1k8k_C          302 FQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTT-----GMDGGMSIWDVR  360 (372)
T ss_dssp             HHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEE-----ETTSEEEEEEHH
T ss_pred             hhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEe-----cCCCceEEEEec
Confidence                                01222347788886 3     466666     345789999874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.95  E-value=3.8e-26  Score=241.12  Aligned_cols=305  Identities=11%  Similarity=0.054  Sum_probs=203.5

Q ss_pred             hcccccEEEEcCCCcEEE-EEec---CcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--e
Q 005459           66 REGENLQAVWSPDTKLIA-VVTS---SLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--V  139 (696)
Q Consensus        66 ~~G~~~~v~wsPDg~~la-v~t~---dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~  139 (696)
                      +.+.+.+++|+||++.++ +++.   ||.|++|++..+......                 .     ..+...|.++  .
T Consensus        17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~-----------------~-----~~~~~~v~~~~~~   74 (357)
T 3i2n_A           17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR-----------------E-----IEKAKPIKCGTFG   74 (357)
T ss_dssp             CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE-----------------E-----EEESSCEEEEECT
T ss_pred             CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee-----------------e-----ecccCcEEEEEEc
Confidence            346789999999997655 5554   899999999754321100                 0     0122344444  4


Q ss_pred             eC---CCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEE
Q 005459          140 SD---NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL  216 (696)
Q Consensus       140 ~~---~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~  216 (696)
                      ++   ++.+++++.+|.|++|+.+.......                                   .+..+...|.++.|
T Consensus        75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----------------------------------~~~~~~~~v~~~~~  119 (357)
T 3i2n_A           75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVY-----------------------------------SVKGHKEIINAIDG  119 (357)
T ss_dssp             TCCTTTCCEEEEETTSCEEEECTTSCSSCSE-----------------------------------EECCCSSCEEEEEE
T ss_pred             CCCCCCceEEEecCCCeEEEEeCCCCCccEE-----------------------------------EEEecccceEEEee
Confidence            55   57899999999999865543220100                                   12245566888776


Q ss_pred             ccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce-e---cCCC----CeEE-EE----EcCCCcEEEEEecCCeEEEE
Q 005459          217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-E---LGSG----DAVC-AS----IAPEQQILAVGTRRGVVELY  283 (696)
Q Consensus       217 ~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~-~---~~~~----~~v~-v~----~sp~~~~la~g~~dg~v~vw  283 (696)
                      .+.+    +++++|+.+++++.|+++++||...++. .   ..|.    ..+. ++    |+|++++|++|+.||.|++|
T Consensus       120 ~~~~----~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~  195 (357)
T 3i2n_A          120 IGGL----GIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLF  195 (357)
T ss_dssp             ESGG----GCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEE
T ss_pred             cccc----ccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEE
Confidence            5432    3578999999999999999999876541 1   2222    2444 66    78999999999999999999


Q ss_pred             EccCCCceeeEEeeccCCCCCCCCCCeEEEEECC---CCCeEEEEEcCCcEEEEEccCCeeEEEee-----cccccceec
Q 005459          284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP---DNSAFAVGWKSRGLTVWSVSGCRLMSTIR-----QISLSSISS  355 (696)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp---dg~~lasg~~Dg~v~vW~~~~~~~~~~l~-----~~~~~~v~~  355 (696)
                      |+++ .+.. ....        |.+.|.+++|+|   ++..|++|+.||.|++||+.+++....+.     +| ...|.+
T Consensus       196 d~~~-~~~~-~~~~--------~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~  264 (357)
T 3i2n_A          196 DLRN-MALR-WETN--------IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH-KSTVWQ  264 (357)
T ss_dssp             ETTT-TEEE-EEEE--------CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC-SSCEEE
T ss_pred             ECcc-Ccee-eecC--------CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC-cCCEEE
Confidence            9987 5543 3345        889999999999   99999999999999999998765433332     33 333444


Q ss_pred             ccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecce-eeeeccCCCCceeeeeeecCCeEEEEecCCC
Q 005459          356 PIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDT  434 (696)
Q Consensus       356 ~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~-~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~  434 (696)
                      ++|+|+                                        ++ .+++++.|+.+++|++..+........ ...
T Consensus       265 ~~~~~~----------------------------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~g~  303 (357)
T 3i2n_A          265 VRHLPQ----------------------------------------NRELFLTAGGAGGLHLWKYEYPIQRSKKDS-EGI  303 (357)
T ss_dssp             EEEETT----------------------------------------EEEEEEEEETTSEEEEEEEECCSCC--CCT-TSC
T ss_pred             EEECCC----------------------------------------CCcEEEEEeCCCcEEEeecCCCcccccccC-CCC
Confidence            444443                                        33 466777788888888766543211100 000


Q ss_pred             CcceeEEeecCeeeecCCCceEEEEEcCCCCEEE-EEeCCccE-EEEccCC
Q 005459          435 DELKILHLNLPVSYISQNWPVQHVAASKDGMFLA-VAGLHGLI-LYDIRQK  483 (696)
Q Consensus       435 ~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la-~ag~dG~i-~w~~~sg  483 (696)
                      ....-...+....+.+|..+|.+++|+|+|++|| +++.||.+ +||+.+.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          304 EMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             CCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             ccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            0000011223456778999999999999999998 79999999 9998764

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.95  E-value=2.8e-26  Score=250.59  Aligned_cols=346  Identities=12%  Similarity=0.119  Sum_probs=215.5

Q ss_pred             CCceEEEEEeCCcEEEEEc-cCeEEEeecCCcee-----------eEEEeecCh------HHHhhcccccEEEEcCCC--
Q 005459           20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKV-----------RLGKYKRDS------ESVQREGENLQAVWSPDT--   79 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~-----------~l~~~~r~~------~sl~~~G~~~~v~wsPDg--   79 (696)
                      +....++|||||++||+++ |+.|+||+.. ...           .+..+....      .++...+.+.+++|+|++  
T Consensus        29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~  107 (447)
T 3dw8_B           29 DIISTVEFNHSGELLATGDKGGRVVIFQQE-QENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA  107 (447)
T ss_dssp             GSEEEEEECSSSSEEEEEETTSEEEEEEEC-C-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred             CcEEEEEECCCCCEEEEEcCCCeEEEEEec-CCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence            3555589999999999985 7899999986 322           122332111      001112678999999999  


Q ss_pred             cEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEec
Q 005459           80 KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISW  159 (696)
Q Consensus        80 ~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w  159 (696)
                      ..|++++.||.|++|++...........                    +..+.+.+..........+     ..+....|
T Consensus       108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~--------------------~~~~~g~~~~~~~~~~~~~-----~~~~~~~~  162 (447)
T 3dw8_B          108 AQFLLSTNDKTIKLWKISERDKRPEGYN--------------------LKEEDGRYRDPTTVTTLRV-----PVFRPMDL  162 (447)
T ss_dssp             SEEEEEECSSCEEEEEEEEEEEEEECCS--------------------CC--------CCCCCSCCC-----CEEEEEEE
T ss_pred             ceEEEeCCCCeEEEEecccccCCcceec--------------------ccCccccccCcccccceEe-----ccccchhe
Confidence            8999999999999999986442110000                    0000000000000000000     00000000


Q ss_pred             CCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeecc
Q 005459          160 KGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK  239 (696)
Q Consensus       160 ~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d  239 (696)
                      .....                                  ........+...|.++          .++|||+.++++ .|
T Consensus       163 ~~~~~----------------------------------~~~~~~~~h~~~v~~~----------~~~~~~~~l~s~-~d  197 (447)
T 3dw8_B          163 MVEAS----------------------------------PRRIFANAHTYHINSI----------SINSDYETYLSA-DD  197 (447)
T ss_dssp             EEEEE----------------------------------EEEEECSCCSSCCCEE----------EECTTSSEEEEE-CS
T ss_pred             eeecc----------------------------------ceEEeccCCCcceEEE----------EEcCCCCEEEEe-CC
Confidence            00000                                  0000111233445554          478899999988 79


Q ss_pred             CCceeeeeeecc-e----------ecCCCCeEE-EEEcCCC-cEEEEEecCCeEEEEEccCCCce----eeEEeeccCCC
Q 005459          240 KGLKLAEFIKID-K----------ELGSGDAVC-ASIAPEQ-QILAVGTRRGVVELYDLAESASL----IRTVSLYDWGY  302 (696)
Q Consensus       240 ~~~~~~~~~~~~-~----------~~~~~~~v~-v~~sp~~-~~la~g~~dg~v~vw~~~~~~~~----~~~~~~~~~~~  302 (696)
                      +++++||..... .          ..+|...+. ++|+|++ ++||+|+.||+|++||+++ .+.    ...+..     
T Consensus       198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~-----  271 (447)
T 3dw8_B          198 LRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHSKLFEE-----  271 (447)
T ss_dssp             SEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTCEEECC-----
T ss_pred             CeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-CccccceeeEecc-----
Confidence            999999987322 1          246888777 9999998 9999999999999999987 554    567776     


Q ss_pred             CCCCCC------------CeEEEEECCCCCeEEEEEcCCcEEEEEccC-CeeEEEeecccccc---------------ee
Q 005459          303 SMDDTG------------PVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSS---------------IS  354 (696)
Q Consensus       303 ~~~h~g------------~V~~l~~spdg~~lasg~~Dg~v~vW~~~~-~~~~~~l~~~~~~~---------------v~  354 (696)
                         |.+            +|.+++|+|||++|++|+. +.|++||+.. ++++.++.+| ...               +.
T Consensus       272 ---~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~i~~~~  346 (447)
T 3dw8_B          272 ---PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH-EYLRSKLCSLYENDCIFDKF  346 (447)
T ss_dssp             ---C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC-GGGTTTHHHHHHTSGGGCCC
T ss_pred             ---CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc-ccccccccccccccccccce
Confidence               654            9999999999999999999 9999999986 8888888877 321               22


Q ss_pred             cccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEE--EEecceeeeeccCCCCceeeeeeecCCeEEEE
Q 005459          355 SPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSFGKCCLNRGVSGMTYARQVIYGEDRLLVV  429 (696)
Q Consensus       355 ~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~--~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~  429 (696)
                      .++|+|++    ..+++|+   .+++|+..+++.+... ++.....  .....+.+..++...         ...     
T Consensus       347 ~~~~s~~~----~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-----  407 (447)
T 3dw8_B          347 ECCWNGSD----SVVMTGSYNNFFRMFDRNTKRDITLE-ASRENNKPRTVLKPRKVCASGKRK---------KDE-----  407 (447)
T ss_dssp             CEEECTTS----SEEEEECSTTEEEEEETTTCCEEEEE-CCSTTCCTTCBCCCCCEECSSCCC---------TTC-----
T ss_pred             EEEECCCC----CEEEEeccCCEEEEEEcCCCcceeee-ecccccccccccCCccccccCCcc---------ccc-----
Confidence            37899998    7788776   8899999888776432 3322110  000011111111100         000     


Q ss_pred             ecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEc
Q 005459          430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI  480 (696)
Q Consensus       430 ~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~  480 (696)
                                    +......++.+|.+++|+|+|.+||+|+.++..+|+.
T Consensus       408 --------------~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~  444 (447)
T 3dw8_B          408 --------------ISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQD  444 (447)
T ss_dssp             --------------EEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred             --------------ccccccccCCceeEEEECCCCCEEEEEecceeeeecc
Confidence                          0111224566799999999999999999999778864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.95  E-value=4.7e-26  Score=249.44  Aligned_cols=296  Identities=12%  Similarity=0.161  Sum_probs=236.4

Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW  300 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~  300 (696)
                      ++.++|+.+++++.|+++++|+..+++..   .+|...+. ++|+  +++|++|+.||+|++||+.+ ++.+.++.+   
T Consensus       124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~---  197 (445)
T 2ovr_B          124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAET-GECIHTLYG---  197 (445)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT-TEEEEEECC---
T ss_pred             EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCc-CcEEEEECC---
Confidence            36678999999999999999998766543   67888887 8887  67999999999999999988 788888888   


Q ss_pred             CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEE
Q 005459          301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQ  377 (696)
Q Consensus       301 ~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~  377 (696)
                           |.+.|.+++|+  ++.|++|+.||+|++||+.+++++.++.+| ...|.++.+  ++    ..+++|+   .+.+
T Consensus       198 -----h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~--~~----~~l~~~~~dg~i~i  263 (445)
T 2ovr_B          198 -----HTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGH-VAAVRCVQY--DG----RRVVSGAYDFMVKV  263 (445)
T ss_dssp             -----CSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECC-SSCEEEEEE--CS----SCEEEEETTSCEEE
T ss_pred             -----CCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCC-cccEEEEEE--CC----CEEEEEcCCCEEEE
Confidence                 99999999995  678999999999999999999999999988 677999888  44    6677776   8999


Q ss_pred             EcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceE
Q 005459          378 WDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ  456 (696)
Q Consensus       378 W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~  456 (696)
                      |+..+++++....+|...+..+.+ ++.+++++.|+.+++|++.++..                    ...+.+|..++.
T Consensus       264 wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------------------~~~~~~~~~~v~  323 (445)
T 2ovr_B          264 WDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC--------------------IHTLTGHQSLTS  323 (445)
T ss_dssp             EEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE--------------------EEEECCCCSCEE
T ss_pred             EECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCE--------------------EEEEcCCcccEE
Confidence            999999999999999999988888 88899999999999999876654                    456678888888


Q ss_pred             EEEEcCCCCEEEEEeCCccE-EEEccCCceE-ecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCcc
Q 005459          457 HVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQS  534 (696)
Q Consensus       457 ~va~s~dG~~la~ag~dG~i-~w~~~sg~w~-~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~  534 (696)
                      ++++  +++++++|+.||.+ +||+.+++.. .+... ......+..+.|.++.++++     +.+..|++|+....   
T Consensus       324 ~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~s~-----~~dg~v~iwd~~~~---  392 (445)
T 2ovr_B          324 GMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGP-NKHQSAVTCLQFNKNFVITS-----SDDGTVKLWDLKTG---  392 (445)
T ss_dssp             EEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECST-TSCSSCEEEEEECSSEEEEE-----ETTSEEEEEETTTC---
T ss_pred             EEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccC-CCCCCCEEEEEECCCEEEEE-----eCCCeEEEEECCCC---
Confidence            7776  57899999999999 9999887642 22211 11223477899999988887     34578999987521   


Q ss_pred             ceeEEe------ecCCcc--EEEEccCCEEEEEEcCce----EEEEEEE
Q 005459          535 SLLCRK------SLLAKP--IVMDVYEDYILVTYRPFD----VHIFHVK  571 (696)
Q Consensus       535 ~~~~~~------~~~~~~--l~~~~~~~~llv~~~d~~----~~l~~~~  571 (696)
                      ..+...      ....++  +.+++.+..+++++.|+.    +.+|++.
T Consensus       393 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          393 EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence            122222      122323  455677777888888886    7777664

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.95  E-value=1.7e-26  Score=238.83  Aligned_cols=240  Identities=12%  Similarity=0.157  Sum_probs=186.9

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC-CceeeEEeeccCCCCCCCCCCeEEEEECCC--CCeEEEEEcCC
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSR  329 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg  329 (696)
                      .+|.+.|. ++|+|++++||+|+.||+|+||++... .+.+.++.+        |+++|.+++|+|+  |++||+|+.|+
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~g--------H~~~V~~v~~s~~~~g~~l~s~s~D~   77 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG--------HEGPVWRVDWAHPKFGTILASCSYDG   77 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECC--------CSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcc--------ccCCeEEEEecCCCcCCEEEEEcCCC
Confidence            57888888 999999999999999999999999752 356778888        9999999999874  89999999999


Q ss_pred             cEEEEEccCCe--eEEEeecccccceecccccCC--CCCCccceecce---eeEEEcCCCce--EEEEecCCcceEEEEe
Q 005459          330 GLTVWSVSGCR--LMSTIRQISLSSISSPIVKPN--QDCKYEPLMSGT---SMMQWDEYGYR--LYAIEEGSSERVLIFS  400 (696)
Q Consensus       330 ~v~vW~~~~~~--~~~~l~~~~~~~v~~~~~sp~--~~~~~~~l~sg~---~~~~W~~~~~~--l~~~~~~~~~~v~~~~  400 (696)
                      +|++||+.+++  .+.++.+| ...|.+++|+|+  +    ..+++|+   ++++|+.....  ......+|...|..+.
T Consensus        78 ~v~iWd~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~g----~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~  152 (297)
T 2pm7_B           78 KVMIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYG----PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS  152 (297)
T ss_dssp             EEEEEEBSSSCBCCCEEECCC-SSCEEEEEECCGGGC----SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE
T ss_pred             EEEEEEcCCCceEEEEEeecC-CCceeEEEeCcCCCC----cEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEe
Confidence            99999998764  45667666 678999999997  5    6788777   89999987652  1345567888885444


Q ss_pred             c----------------ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC
Q 005459          401 F----------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG  464 (696)
Q Consensus       401 ~----------------~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG  464 (696)
                      +                ++.+++++.|+++++|++..+....                .+...+.+|..+|++++|+|++
T Consensus       153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~----------------~~~~~l~~H~~~V~~v~~sp~~  216 (297)
T 2pm7_B          153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY----------------VLESTLEGHSDWVRDVAWSPTV  216 (297)
T ss_dssp             ECCCC------------CCEEEEEETTSCEEEEEEETTTTEE----------------EEEEEECCCSSCEEEEEECCCC
T ss_pred             ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE----------------EEEEEecCCCCceEEEEECCCC
Confidence            3                2579999999999999987665321                1134567899999999999995


Q ss_pred             ---CEEEEEeCCccE-EEEccCCc--eE--ecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459          465 ---MFLAVAGLHGLI-LYDIRQKK--WR--VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       465 ---~~la~ag~dG~i-~w~~~sg~--w~--~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                         ++||+|+.||.+ +||+.++.  |+  .+....  ..-.+..++|.  ++.|+++     +.+..||+|+..
T Consensus       217 ~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~las~-----~~D~~v~lw~~~  284 (297)
T 2pm7_B          217 LLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEK--FPDVLWRASWSLSGNVLALS-----GGDNKVTLWKEN  284 (297)
T ss_dssp             SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSC--CSSCEEEEEECSSSCCEEEE-----ETTSCEEEEEEC
T ss_pred             CCceEEEEEECCCcEEEEEeCCCCCccceeeeeccc--CCCcEEEEEECCCCCEEEEE-----cCCCcEEEEEEC
Confidence               899999999999 99998742  33  221111  12236788886  4566665     234689999764

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.95  E-value=8.4e-26  Score=244.02  Aligned_cols=273  Identities=16%  Similarity=0.156  Sum_probs=215.0

Q ss_pred             eEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEE
Q 005459          134 SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW  213 (696)
Q Consensus       134 ~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~  213 (696)
                      .+.++..+++.+++++.+|.|++|+.+.......                                   ....+...|.+
T Consensus        95 ~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~-----------------------------------~~~~~~~~v~~  139 (401)
T 4aez_A           95 YLNLLDWSNLNVVAVALERNVYVWNADSGSVSAL-----------------------------------AETDESTYVAS  139 (401)
T ss_dssp             TCBCEEECTTSEEEEEETTEEEEEETTTCCEEEE-----------------------------------EECCTTCCEEE
T ss_pred             eEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEe-----------------------------------eecCCCCCEEE
Confidence            3455667778899999999999866543221100                                   01113445666


Q ss_pred             EEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC
Q 005459          214 LELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA  289 (696)
Q Consensus       214 ~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~  289 (696)
                      ++          ++|||+.+++++.|+.+++|+...++..   .+|...+. ++|  ++++|++|+.||.|++||++...
T Consensus       140 v~----------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~  207 (401)
T 4aez_A          140 VK----------WSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN  207 (401)
T ss_dssp             EE----------ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS
T ss_pred             EE----------ECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc
Confidence            55          7789999999999999999998765433   67888877 888  46799999999999999998646


Q ss_pred             ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce
Q 005459          290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL  369 (696)
Q Consensus       290 ~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l  369 (696)
                      .....+..        |.+.|.+++|+|||+.|++|+.|+.|++||+.++..+.++.+| ...|.+++|+|++.   ..+
T Consensus       208 ~~~~~~~~--------~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~p~~~---~ll  275 (401)
T 4aez_A          208 HQIGTLQG--------HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH-NAAVKAVAWCPWQS---NLL  275 (401)
T ss_dssp             CEEEEEEC--------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCC-SSCCCEEEECTTST---TEE
T ss_pred             ceeeEEcC--------CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCC-cceEEEEEECCCCC---CEE
Confidence            67777887        9999999999999999999999999999999999988888887 77899999999862   444


Q ss_pred             ecc-----eeeEEEcCCCceEEEEecCCcceE--EEEec-ceeeee--ccCCCCceeeeeeecCCeEEEEecCCCCccee
Q 005459          370 MSG-----TSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLN--RGVSGMTYARQVIYGEDRLLVVQSEDTDELKI  439 (696)
Q Consensus       370 ~sg-----~~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s--~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w  439 (696)
                      ++|     ..+.+|+..+++++.... +...+  +++++ ++.+++  ++.|+.+++|++..+...              
T Consensus       276 ~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~--------------  340 (401)
T 4aez_A          276 ATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT--------------  340 (401)
T ss_dssp             EEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE--------------
T ss_pred             EEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce--------------
Confidence            443     289999999998888775 44566  55555 777777  668999999998765431              


Q ss_pred             EEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          440 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       440 ~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                          ....+.+|..+|.+++|+|||++||+++.||.+ +|++.+++
T Consensus       341 ----~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          341 ----KQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             ----EEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             ----eEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence                122456899999999999999999999999999 99998875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.95  E-value=2.3e-27  Score=253.27  Aligned_cols=236  Identities=10%  Similarity=0.098  Sum_probs=173.0

Q ss_pred             cccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eeeCCCe
Q 005459           67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKH  144 (696)
Q Consensus        67 ~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~~~~  144 (696)
                      .+.+.+++|+|||++||+++.||.|++|++..+....                     ...+..+...|.+  +.++++.
T Consensus        11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~---------------------~~~~~~h~~~v~~~~~s~~~~~   69 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKH---------------------ARTFSDHDKIVTCVDWAPKSNR   69 (377)
T ss_dssp             SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEE---------------------CCCBCCCSSCEEEEEECTTTCC
T ss_pred             CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEE---------------------EEEEecCCceEEEEEEeCCCCE
Confidence            3678999999999999999999999999998542000                     0112233344444  4567789


Q ss_pred             EEEEecCCcEEEEecCCcc-ccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceE
Q 005459          145 MLLGLSDGSLYSISWKGEF-YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL  223 (696)
Q Consensus       145 llv~t~~g~i~~~~w~~~~-~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  223 (696)
                      |++++.||.|++|+.+... ....                                  .....+...|.++.        
T Consensus        70 l~s~s~d~~v~vwd~~~~~~~~~~----------------------------------~~~~~~~~~v~~~~--------  107 (377)
T 3dwl_C           70 IVTCSQDRNAYVYEKRPDGTWKQT----------------------------------LVLLRLNRAATFVR--------  107 (377)
T ss_dssp             EEEEETTSSEEEC------CCCCE----------------------------------EECCCCSSCEEEEE--------
T ss_pred             EEEEeCCCeEEEEEcCCCCceeee----------------------------------eEecccCCceEEEE--------
Confidence            9999999999985443221 0000                                  11223455576655        


Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecce------ecC-CCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC-------
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK------ELG-SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES-------  288 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~------~~~-~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~-------  288 (696)
                        ++|||+.+++++.|+++++|+....+.      +.+ |...+. ++|+|++++||+|+.||+|++||+...       
T Consensus       108 --~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  185 (377)
T 3dwl_C          108 --WSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPE  185 (377)
T ss_dssp             --CCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCC
T ss_pred             --ECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcc
Confidence              678899999999999999999876542      244 888887 999999999999999999999998631       


Q ss_pred             ----------CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee----EEEeeccccccee
Q 005459          289 ----------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL----MSTIRQISLSSIS  354 (696)
Q Consensus       289 ----------~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~----~~~l~~~~~~~v~  354 (696)
                                ++.+..+         +|.+.|.+++|+|||++|++|+.||.|++||+.++..    +.++.+| ...|.
T Consensus       186 ~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~  255 (377)
T 3dwl_C          186 ASVWGSRLPFNTVCAEY---------PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS-QLPLR  255 (377)
T ss_dssp             SCSSCSCCCEEEEEECC---------CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS-SSCEE
T ss_pred             ccccccccchhhhhhcc---------cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC-CCceE
Confidence                      1122222         3999999999999999999999999999999998876    7788887 67899


Q ss_pred             cccccCCCCCCccceecce--eeEEEcCC
Q 005459          355 SPIVKPNQDCKYEPLMSGT--SMMQWDEY  381 (696)
Q Consensus       355 ~~~~sp~~~~~~~~l~sg~--~~~~W~~~  381 (696)
                      +++|+|++    +.+++|.  ..++|+..
T Consensus       256 ~~~~s~~~----~~l~~~~~~~~~~~~~~  280 (377)
T 3dwl_C          256 SLLWANES----AIVAAGYNYSPILLQGN  280 (377)
T ss_dssp             EEEEEETT----EEEEEESSSSEEEECCC
T ss_pred             EEEEcCCC----CEEEEEcCCcEEEEEeC
Confidence            99999998    8888776  55677665

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=1.7e-26  Score=244.49  Aligned_cols=283  Identities=10%  Similarity=0.122  Sum_probs=209.4

Q ss_pred             cccceeEEEeeeC------CCeEEEEecCCcEEEEecCCcccc-ceeeccCCCCCcccccccccCCCCcccccCCCcccc
Q 005459          129 AEKGLSVSNIVSD------NKHMLLGLSDGSLYSISWKGEFYG-AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVS  201 (696)
Q Consensus       129 ~~~~~~v~~~~~~------~~~llv~t~~g~i~~~~w~~~~~~-~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~  201 (696)
                      .++...|.+++..      ...+++++.++.|++|+....... ....                                
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~--------------------------------   62 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS--------------------------------   62 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEE--------------------------------
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeee--------------------------------
Confidence            3556677776554      345788888888888665522211 1100                                


Q ss_pred             CCcCCCcccEEEEEEccCcceEEEEEeC----CcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcC-CCcEEE
Q 005459          202 DHKFPISSAIIWLELCLPMRLLFVLYSN----GQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAP-EQQILA  272 (696)
Q Consensus       202 ~~~~~~~~~i~~~~~~~~~~~~~~~s~d----G~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp-~~~~la  272 (696)
                      .....+...|.++.          ++++    |+++++++.|+++++|+...++..   .+|...+. ++|+| ++++||
T Consensus        63 ~~~~~~~~~v~~~~----------~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  132 (366)
T 3k26_A           63 YVDADADENFYTCA----------WTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLL  132 (366)
T ss_dssp             EECSCTTCCEEEEE----------EEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEE
T ss_pred             ccccCCCCcEEEEE----------eccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEE
Confidence            00011334566655          6677    779999999999999998765443   67888887 99999 999999


Q ss_pred             EEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeec-----
Q 005459          273 VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-----  347 (696)
Q Consensus       273 ~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~-----  347 (696)
                      +|+.||+|++||+++ ++.+..+...     .+|.+.|.+++|+|+|+.|++|+.||.|++||+.+++....+..     
T Consensus       133 s~~~dg~i~iwd~~~-~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  206 (366)
T 3k26_A          133 SVSKDHALRLWNIQT-DTLVAIFGGV-----EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYN  206 (366)
T ss_dssp             EEETTSCEEEEETTT-TEEEEEECST-----TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCC
T ss_pred             EEeCCCeEEEEEeec-CeEEEEeccc-----ccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEec
Confidence            999999999999987 6777666210     12999999999999999999999999999999987765444332     


Q ss_pred             -----------------------ccccceecccccCCCCCCccceecce---eeEEEcCCCc--------------eEEE
Q 005459          348 -----------------------ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY--------------RLYA  387 (696)
Q Consensus       348 -----------------------~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~--------------~l~~  387 (696)
                                             | ...|.+++|+  +    +.+++++   .+++|+..+.              .++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--~----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  279 (366)
T 3k26_A          207 PNKTNRPFISQKIHFPDFSTRDIH-RNYVDCVRWL--G----DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILG  279 (366)
T ss_dssp             GGGCSSCCCCEEECCCSEEECSSC-SSCCCEEEEE--T----TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEE
T ss_pred             CCCCcccccceeeccCccccccCC-cceEEEEEEc--C----CEEEEEecCCEEEEEeCCCccccccccccCCcchheec
Confidence                                   4 6778888887  3    5677665   8999998765              3466


Q ss_pred             EecCCcceEEE--Eec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecC--CCceEEEEE
Q 005459          388 IEEGSSERVLI--FSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ--NWPVQHVAA  460 (696)
Q Consensus       388 ~~~~~~~~v~~--~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~I~~va~  460 (696)
                      ...+|...+..  +++   ++.+++++.|+.+++|++..++...                .....+.+|  ..+|.+++|
T Consensus       280 ~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----------------~~~~~~~~~~~~~~v~~~~~  343 (366)
T 3k26_A          280 RFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK----------------AKCTTLTHHKCGAAIRQTSF  343 (366)
T ss_dssp             EEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG----------------CEEEEECCTTCCSCEEEEEE
T ss_pred             cccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc----------------ccceEEcccccCCceEEEEe
Confidence            67777777733  333   5789999999999999987765310                012245566  789999999


Q ss_pred             cCCCCEEEEEeCCccE-EEEccC
Q 005459          461 SKDGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       461 s~dG~~la~ag~dG~i-~w~~~s  482 (696)
                      +|||++||+|+.||.+ +||+.+
T Consensus       344 s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          344 SRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             CTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCCCCeEEEEeCCCEEEEEEecC
Confidence            9999999999999999 999863

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.95  E-value=8.2e-26  Score=248.64  Aligned_cols=273  Identities=12%  Similarity=0.123  Sum_probs=218.2

Q ss_pred             cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEE
Q 005459          254 LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV  333 (696)
Q Consensus       254 ~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~v  333 (696)
                      .+|.+.+..++.+++++||+|+.||+|++||+.+ ++.+..+.+        |.++|.+++|+|++ .|++|+.||+|++
T Consensus       118 ~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~-~~~~~~~~~--------h~~~V~~l~~~~~~-~l~s~s~dg~i~v  187 (464)
T 3v7d_B          118 RGHMTSVITCLQFEDNYVITGADDKMIRVYDSIN-KKFLLQLSG--------HDGGVWALKYAHGG-ILVSGSTDRTVRV  187 (464)
T ss_dssp             ECCSSSCEEEEEEETTEEEEEETTSCEEEEETTT-TEEEEEECC--------CSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred             cCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCC-CcEEEEEeC--------CCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence            5777664323445678999999999999999988 788888888        99999999999998 9999999999999


Q ss_pred             EEccCCeeEEEeecccccceecccccC--CCCCCccceecce---eeEEEcCCCce-----------------------E
Q 005459          334 WSVSGCRLMSTIRQISLSSISSPIVKP--NQDCKYEPLMSGT---SMMQWDEYGYR-----------------------L  385 (696)
Q Consensus       334 W~~~~~~~~~~l~~~~~~~v~~~~~sp--~~~~~~~~l~sg~---~~~~W~~~~~~-----------------------l  385 (696)
                      ||+.+++++.++.+| ...|.+++|+|  ++    ..+++|+   ++.+|+..+.+                       +
T Consensus       188 wd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~----~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (464)
T 3v7d_B          188 WDIKKGCCTHVFEGH-NSTVRCLDIVEYKNI----KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  262 (464)
T ss_dssp             EETTTTEEEEEECCC-SSCEEEEEEEESSSC----EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred             EECCCCcEEEEECCC-CCccEEEEEecCCCC----CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence            999999999999988 78899999985  44    6788777   89999998765                       3


Q ss_pred             EEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC
Q 005459          386 YAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG  464 (696)
Q Consensus       386 ~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG  464 (696)
                      .....+|...+..+++ ++.+++++.|+.+++|++.++..                    ...+.+|..+|.+++|+|+|
T Consensus       263 ~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~--------------------~~~~~~~~~~v~~~~~~~~~  322 (464)
T 3v7d_B          263 VGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC--------------------LYILSGHTDRIYSTIYDHER  322 (464)
T ss_dssp             EEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEE--------------------EEEECCCSSCEEEEEEETTT
T ss_pred             EEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--------------------EEEecCCCCCEEEEEEcCCC
Confidence            5567788888988888 88999999999999999865443                    44567899999999999999


Q ss_pred             CEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecC
Q 005459          465 MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLL  543 (696)
Q Consensus       465 ~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~  543 (696)
                      +++++|+.||.+ +||+.+++....-   +.+...+..+.|.++.++++     +.+..|++|+..........+ +.-.
T Consensus       323 ~~l~sg~~dg~i~vwd~~~~~~~~~~---~~h~~~v~~~~~~~~~l~s~-----s~dg~v~vwd~~~~~~~~~~~-~~~~  393 (464)
T 3v7d_B          323 KRCISASMDTTIRIWDLENGELMYTL---QGHTALVGLLRLSDKFLVSA-----AADGSIRGWDANDYSRKFSYH-HTNL  393 (464)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECSSEEEEE-----ETTSEEEEEETTTCCEEEEEE-CTTC
T ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEE---eCCCCcEEEEEEcCCEEEEE-----eCCCcEEEEECCCCceeeeec-CCCC
Confidence            999999999999 9999988643211   11223477888989888887     344789999986332222222 2233


Q ss_pred             CccEEEEccCCEEEEEEcCceEEEEEEE
Q 005459          544 AKPIVMDVYEDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       544 ~~~l~~~~~~~~llv~~~d~~~~l~~~~  571 (696)
                      ...+.+++.+..+++++ |+.+++|+++
T Consensus       394 ~~~~~~~~~~~~l~~~~-dg~i~iwd~~  420 (464)
T 3v7d_B          394 SAITTFYVSDNILVSGS-ENQFNIYNLR  420 (464)
T ss_dssp             CCEEEEEECSSEEEEEE-TTEEEEEETT
T ss_pred             ccEEEEEeCCCEEEEec-CCeEEEEECC
Confidence            34577888888888766 8999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.95  E-value=1e-25  Score=242.07  Aligned_cols=307  Identities=13%  Similarity=0.015  Sum_probs=219.1

Q ss_pred             ccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCC
Q 005459          128 FAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI  207 (696)
Q Consensus       128 ~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~  207 (696)
                      +.++...|.+++.+++.+++++.||.|++|+.+.......           .                   .....+..+
T Consensus        12 ~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~-----------~-------------------~~~~~~~~h   61 (397)
T 1sq9_A           12 GKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENP-----------K-------------------DKSYSHFVH   61 (397)
T ss_dssp             SSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCG-----------G-------------------GGEEEEECC
T ss_pred             hhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccC-----------C-------------------CcceEEecC
Confidence            5667788988888889999999999999976553321000           0                   000011234


Q ss_pred             cccEEEEEEccCcceEEEEEeC----C---cEEEEeeccCCceeeeeeecce-----e---cCC-----CCeEE-EEEc-
Q 005459          208 SSAIIWLELCLPMRLLFVLYSN----G---QLMSCSVSKKGLKLAEFIKIDK-----E---LGS-----GDAVC-ASIA-  265 (696)
Q Consensus       208 ~~~i~~~~~~~~~~~~~~~s~d----G---~~~~~~~~d~~~~~~~~~~~~~-----~---~~~-----~~~v~-v~~s-  265 (696)
                      ...|.++.          ++++    |   +.+++++.|+++++|+....+.     +   ..|     ...+. ++|+ 
T Consensus        62 ~~~v~~~~----------~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  131 (397)
T 1sq9_A           62 KSGLHHVD----------VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA  131 (397)
T ss_dssp             TTCEEEEE----------EEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred             CCcEEEEE----------EecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEee
Confidence            45566655          6777    9   9999999999999999887653     2   556     35565 9999 


Q ss_pred             ---CCCcE-EEEEecCCeEEEEEccCC-----Cceee-----EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459          266 ---PEQQI-LAVGTRRGVVELYDLAES-----ASLIR-----TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL  331 (696)
Q Consensus       266 ---p~~~~-la~g~~dg~v~vw~~~~~-----~~~~~-----~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v  331 (696)
                         |++++ |++|+.||.|++||+...     .+.+.     .+.+. ......|...|.+++|+|+| .|++|+.|+.|
T Consensus       132 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i  209 (397)
T 1sq9_A          132 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT-VESPMTPSQFATSVDISERG-LIATGFNNGTV  209 (397)
T ss_dssp             CC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE-ECCSSSSCCCCCEEEECTTS-EEEEECTTSEE
T ss_pred             ccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee-eccccCCCCCceEEEECCCc-eEEEEeCCCcE
Confidence               99999 999999999999999861     12233     44220 00011388999999999999 99999999999


Q ss_pred             EEEEccCCeeEEEeec---cc--ccceecccccCCCCCCccceecce------eeEEEcCCCceEEEEecC---------
Q 005459          332 TVWSVSGCRLMSTIRQ---IS--LSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEG---------  391 (696)
Q Consensus       332 ~vW~~~~~~~~~~l~~---~~--~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~~~~~---------  391 (696)
                      ++||+..++.+..+..   |.  ...+.+++|+|++    ..++++.      .+.+|+..+++.+....+         
T Consensus       210 ~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~----~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~  285 (397)
T 1sq9_A          210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG----SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL  285 (397)
T ss_dssp             EEEETTTTEEEEEEECCC---CCCCCEEEEEECSST----TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------
T ss_pred             EEEECCCCceeEEEeccccccccCCccceEEECCCC----CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccc
Confidence            9999999999988887   41  4679999999998    7777764      578999999999988888         


Q ss_pred             ----CcceEEEE--ec-ceeeeeccCCCCceeeeeeecCCeEEEEe-----cCCCCcceeEEeecCeeeecCCCceEEEE
Q 005459          392 ----SSERVLIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQ-----SEDTDELKILHLNLPVSYISQNWPVQHVA  459 (696)
Q Consensus       392 ----~~~~v~~~--~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~-----~~~~~~~~w~~~~~~~~~~~~~~~I~~va  459 (696)
                          |...|..+  ++ ++.+++++.|+.+++|++..++....+..     +++.+...   . .......|..+|.+++
T Consensus       286 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---g-~~~~~~~~~~~v~~~~  361 (397)
T 1sq9_A          286 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILA---V-DEHGDSLAEPGVFDVK  361 (397)
T ss_dssp             CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCC---B-CTTSCBCSSCCEEEEE
T ss_pred             cccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhc---c-ccccccccCCceeEEE
Confidence                88888554  44 88999999999999999866543111110     00000000   0 0000112389999999


Q ss_pred             EcCCC----------CEEEEEeCCccE-EEEccCCc
Q 005459          460 ASKDG----------MFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       460 ~s~dG----------~~la~ag~dG~i-~w~~~sg~  484 (696)
                      |+|||          ++|++|+.||.+ +|++.+|+
T Consensus       362 ~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          362 FLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             EECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             eccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            99999          799999999999 99998874

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.2e-25  Score=237.91  Aligned_cols=279  Identities=11%  Similarity=0.056  Sum_probs=210.2

Q ss_pred             ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459          253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL  331 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v  331 (696)
                      +.+|.+.+. ++|+|++++||+|+.||.|++||+.+ ++.+..+..        |.+.|.+++|+|||++|++++.||.|
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~--------h~~~v~~~~~~~~~~~l~s~~~dg~i   98 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN-GERLGTLDG--------HTGTIWSIDVDCFTKYCVTGSADYSI   98 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTT-CCEEEEECC--------CSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-chhhhhhhh--------cCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            367888887 99999999999999999999999988 788888888        99999999999999999999999999


Q ss_pred             EEEEccCCeeEEEeecccccceecccccCCCCCCccceecc--------eeeEEEcCCCce-----------EEEEecCC
Q 005459          332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--------TSMMQWDEYGYR-----------LYAIEEGS  392 (696)
Q Consensus       332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg--------~~~~~W~~~~~~-----------l~~~~~~~  392 (696)
                      ++||+.+++++..+. + ...+.+++|+|++    ..++++        ..+.+|+.....           .......|
T Consensus        99 ~iwd~~~~~~~~~~~-~-~~~v~~~~~~~~~----~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  172 (369)
T 3zwl_B           99 KLWDVSNGQCVATWK-S-PVPVKRVEFSPCG----NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH  172 (369)
T ss_dssp             EEEETTTCCEEEEEE-C-SSCEEEEEECTTS----SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred             EEEECCCCcEEEEee-c-CCCeEEEEEccCC----CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence            999999999888887 3 5679999999998    666655        367889875432           11222233


Q ss_pred             cc--eE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEE
Q 005459          393 SE--RV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFL  467 (696)
Q Consensus       393 ~~--~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~l  467 (696)
                      ..  .+  +++++ ++.+++++.|+.+++|++.....                   ....+..|..+|.+++|+|||++|
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------~~~~~~~~~~~v~~~~~~~~~~~l  233 (369)
T 3zwl_B          173 EGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE-------------------YVDSIDLHEKSISDMQFSPDLTYF  233 (369)
T ss_dssp             TTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTE-------------------EEEEEECCSSCEEEEEECTTSSEE
T ss_pred             cCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcE-------------------eEEEEecCCCceeEEEECCCCCEE
Confidence            33  55  55555 78899999999999999865333                   245667789999999999999999


Q ss_pred             EEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEeec---------CCCeEEEEEeeCCCCCccc
Q 005459          468 AVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYID---------SSNTYELLFYPRYHLDQSS  535 (696)
Q Consensus       468 a~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~---------~~~~~~lr~y~~~~l~~~~  535 (696)
                      ++++.||.+ +||+.+++.....    +....+..++|.  +..+++++...         ......+++|+......  
T Consensus       234 ~~~~~d~~i~v~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--  307 (369)
T 3zwl_B          234 ITSSRDTNSFLVDVSTLQVLKKY----ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE--  307 (369)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEE----ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE--
T ss_pred             EEecCCceEEEEECCCCceeeee----cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc--
Confidence            999999999 9999987643211    122235667775  55666653221         01122799998852211  


Q ss_pred             eeEEee-cCCcc--EEEEccCCEEEEEEcCceEEEEEEEE
Q 005459          536 LLCRKS-LLAKP--IVMDVYEDYILVTYRPFDVHIFHVKL  572 (696)
Q Consensus       536 ~~~~~~-~~~~~--l~~~~~~~~llv~~~d~~~~l~~~~~  572 (696)
                       +.... ...++  +.+++.+++|++++.|+.+++|+++-
T Consensus       308 -~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          308 -IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             -EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             -hhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence             11111 12222  56678889999999999999999863

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=1.3e-26  Score=245.44  Aligned_cols=289  Identities=13%  Similarity=0.176  Sum_probs=216.9

Q ss_pred             CCcccEEEEEEccCcceEEEEEeCC-cEEEEeeccCCceeeeeeeccee--------cCCCCeEE-EEEcCC----CcEE
Q 005459          206 PISSAIIWLELCLPMRLLFVLYSNG-QLMSCSVSKKGLKLAEFIKIDKE--------LGSGDAVC-ASIAPE----QQIL  271 (696)
Q Consensus       206 ~~~~~i~~~~~~~~~~~~~~~s~dG-~~~~~~~~d~~~~~~~~~~~~~~--------~~~~~~v~-v~~sp~----~~~l  271 (696)
                      ++...|.+++|+|.       +++| ..+++++.++.+++|+....+..        ..|...+. ++|+|+    +++|
T Consensus        16 ~h~~~v~~i~~~p~-------~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l   88 (366)
T 3k26_A           16 DHNQPLFGVQFNWH-------SKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL   88 (366)
T ss_dssp             TTCSCEEEEEECTT-------CCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred             CCCCceEEEEEecc-------cCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence            56677888886653       1223 34455555667888988755432        22556666 999999    7799


Q ss_pred             EEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEe---ec
Q 005459          272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTI---RQ  347 (696)
Q Consensus       272 a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l---~~  347 (696)
                      |+|+.||+|++||+.+ ++.+..+.+        |.++|.+++|+| +++.|++|+.||.|++||+..++.+..+   .+
T Consensus        89 ~~~~~dg~i~v~d~~~-~~~~~~~~~--------~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  159 (366)
T 3k26_A           89 AVAGSRGIIRIINPIT-MQCIKHYVG--------HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG  159 (366)
T ss_dssp             EEEETTCEEEEECTTT-CCEEEEEES--------CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTS
T ss_pred             EEecCCCEEEEEEchh-ceEeeeecC--------CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccc
Confidence            9999999999999988 788888888        999999999999 9999999999999999999999988888   45


Q ss_pred             ccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEE----------------------------ecCCcceE
Q 005459          348 ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI----------------------------EEGSSERV  396 (696)
Q Consensus       348 ~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~----------------------------~~~~~~~v  396 (696)
                      | ...|.+++|+|++    +.+++++   .+.+|+..+++....                            ..+|...|
T Consensus       160 ~-~~~v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  234 (366)
T 3k26_A          160 H-RDEVLSADYDLLG----EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV  234 (366)
T ss_dssp             C-SSCEEEEEECTTS----SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred             c-cCceeEEEECCCC----CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence            5 7789999999998    8888876   899999987654322                            23377788


Q ss_pred             EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCC--CCEEEEEeCC
Q 005459          397 LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD--GMFLAVAGLH  473 (696)
Q Consensus       397 ~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~d--G~~la~ag~d  473 (696)
                      ..+.+ ++.+++++.|+.+++|++..+...+.......      ........+..|..+|.+++|+||  |++||+|+.|
T Consensus       235 ~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d  308 (366)
T 3k26_A          235 DCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSE------SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV  308 (366)
T ss_dssp             CEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTC------CCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTT
T ss_pred             EEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCC------cchheeccccccCCcEEEEEEcCCCCCcEEEEEecC
Confidence            66666 88999999999999999876654110000000      011124466788999999999999  9999999999


Q ss_pred             ccE-EEEccCCceE-----ecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeC
Q 005459          474 GLI-LYDIRQKKWR-----VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPR  528 (696)
Q Consensus       474 G~i-~w~~~sg~w~-----~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~  528 (696)
                      |.+ +||+.+++..     .+..  +.....+..++|.  ++.|+++     +.+..|++|+.
T Consensus       309 g~i~vwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~-----~~dg~i~iwd~  364 (366)
T 3k26_A          309 GKLYVWDLEVEDPHKAKCTTLTH--HKCGAAIRQTSFSRDSSILIAV-----CDDASIWRWDR  364 (366)
T ss_dssp             SCEEEEECCSSSGGGCEEEEECC--TTCCSCEEEEEECTTSSEEEEE-----ETTSEEEEEEC
T ss_pred             CcEEEEECCCCCCccccceEEcc--cccCCceEEEEeCCCCCeEEEE-----eCCCEEEEEEe
Confidence            999 9999987421     2221  1112347889997  4567766     34478999976

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.9e-25  Score=229.72  Aligned_cols=274  Identities=14%  Similarity=0.145  Sum_probs=206.8

Q ss_pred             CCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459           20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI   98 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~   98 (696)
                      +...-++| |++++|+++ .++.|+||+.. .......+..      +.+.+.+++|+||+++|++++.||.+++|++..
T Consensus        19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~   90 (313)
T 3odt_A           19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKD-DQWLGTVVYT------GQGFLNSVCYDSEKELLLFGGKDTMINGVPLFA   90 (313)
T ss_dssp             SCEEEEEE-EETTEEEEEETTSEEEEEEES-SSEEEEEEEE------CSSCEEEEEEETTTTEEEEEETTSCEEEEETTC
T ss_pred             CCcEEEEe-cCCCEEEEEEcCCcEEEEECC-CCEEEEEeec------CCccEEEEEECCCCCEEEEecCCCeEEEEEeee
Confidence            34555788 999888888 57899999995 4443333322      246788999999999999999999999999864


Q ss_pred             cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcc
Q 005459           99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV  178 (696)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~  178 (696)
                      ......          +          ..+..+...|.++..+++.+++++.+|.+++|+ .+....             
T Consensus        91 ~~~~~~----------~----------~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d-~~~~~~-------------  136 (313)
T 3odt_A           91 TSGEDP----------L----------YTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK-EGSLVY-------------  136 (313)
T ss_dssp             CTTSCC---------------------CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE-TTEEEE-------------
T ss_pred             cCCCCc----------c----------cchhhcccCEEEEEecCCEEEEEeCCCCEEEEc-CCcEEE-------------
Confidence            321100          0          012344556778878889999999999999865 111100             


Q ss_pred             cccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEe-CCcEEEEeeccCCceeeeeeeccee-cC-
Q 005459          179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKIDKE-LG-  255 (696)
Q Consensus       179 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~-dG~~~~~~~~d~~~~~~~~~~~~~~-~~-  255 (696)
                                              ....+...+.++.          +.+ +++.+++++.++.+++||....... .. 
T Consensus       137 ------------------------~~~~~~~~v~~~~----------~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  182 (313)
T 3odt_A          137 ------------------------NLQAHNASVWDAK----------VVSFSENKFLTASADKTIKLWQNDKVIKTFSGI  182 (313)
T ss_dssp             ------------------------EEECCSSCEEEEE----------EEETTTTEEEEEETTSCEEEEETTEEEEEECSS
T ss_pred             ------------------------ecccCCCceeEEE----------EccCCCCEEEEEECCCCEEEEecCceEEEEecc
Confidence                                    0112333455544          455 8999999999999999995443222 33 


Q ss_pred             CCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459          256 SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW  334 (696)
Q Consensus       256 ~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW  334 (696)
                      |...+. ++|+|+++ +++|+.||.|++||+++ ++.+..+..        |.++|.+++|+||| .|++|+.||.|++|
T Consensus       183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~-~~~~~~~~~--------~~~~i~~~~~~~~~-~l~~~~~dg~v~iw  251 (313)
T 3odt_A          183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT-GDVLRTYEG--------HESFVYCIKLLPNG-DIVSCGEDRTVRIW  251 (313)
T ss_dssp             CSSCEEEEEEEETTE-EEEEETTSEEEEEETTT-CCEEEEEEC--------CSSCEEEEEECTTS-CEEEEETTSEEEEE
T ss_pred             CcccEEEEEEcCCCe-EEEccCCCeEEEEECCc-hhhhhhhhc--------CCceEEEEEEecCC-CEEEEecCCEEEEE
Confidence            777777 99999999 99999999999999998 788888888        99999999999999 69999999999999


Q ss_pred             EccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceE
Q 005459          335 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRL  385 (696)
Q Consensus       335 ~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l  385 (696)
                      |+..+++...+..| ...+.+++|+|++    +.++++.  .+.+|+.+++++
T Consensus       252 d~~~~~~~~~~~~~-~~~i~~~~~~~~~----~~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          252 SKENGSLKQVITLP-AISIWSVDCMSNG----DIIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             CTTTCCEEEEEECS-SSCEEEEEECTTS----CEEEEETTSCEEEEESCGGGC
T ss_pred             ECCCCceeEEEecc-CceEEEEEEccCC----CEEEEeCCCcEEEEeCCCCce
Confidence            99999999999887 6679999999997    5443222  777888776554

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.95  E-value=1.5e-25  Score=241.04  Aligned_cols=309  Identities=11%  Similarity=0.038  Sum_probs=208.8

Q ss_pred             hcccccEEEEcC-CCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEee--e-C
Q 005459           66 REGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--S-D  141 (696)
Q Consensus        66 ~~G~~~~v~wsP-Dg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~--~-~  141 (696)
                      +.+.+.+++|+| |+++||+++.||.|++|++..........          ..............+...|.++.  + +
T Consensus        42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~  111 (408)
T 4a11_B           42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYT----------CKAVCSIGRDHPDVHRYSVETVQWYPHD  111 (408)
T ss_dssp             CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEE----------ECEEEEECTTCTTCCSSCEEEEEECTTC
T ss_pred             cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEe----------ccccccccccccccCCCcEEEEEEccCC
Confidence            457889999999 99999999999999999998654321110          00000011111233455666654  4 4


Q ss_pred             CCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcc
Q 005459          142 NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR  221 (696)
Q Consensus       142 ~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  221 (696)
                      +..+++++.+|.|++|+.+.......                                     ......+..+.+.+   
T Consensus       112 ~~~l~s~~~d~~i~iwd~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~---  151 (408)
T 4a11_B          112 TGMFTSSSFDKTLKVWDTNTLQTADV-------------------------------------FNFEETVYSHHMSP---  151 (408)
T ss_dssp             TTCEEEEETTSEEEEEETTTTEEEEE-------------------------------------EECSSCEEEEEECS---
T ss_pred             CcEEEEEeCCCeEEEeeCCCCcccee-------------------------------------ccCCCceeeeEeec---
Confidence            56789999999999866543221100                                     01122355555443   


Q ss_pred             eEEEEEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCc-EEEEEecCCeEEEEEccCCCceeeEEe
Q 005459          222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVS  296 (696)
Q Consensus       222 ~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~~~~~  296 (696)
                          ..+++..++++..++.+++|+...++.   +.+|...+. ++|+|+++ +||+|+.||.|++||++.....+..+.
T Consensus       152 ----~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~  227 (408)
T 4a11_B          152 ----VSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD  227 (408)
T ss_dssp             ----SCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECC
T ss_pred             ----CCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccc
Confidence                234677899999999999999876543   266887776 99999998 699999999999999987444555443


Q ss_pred             eccC-------CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce
Q 005459          297 LYDW-------GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL  369 (696)
Q Consensus       297 ~~~~-------~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l  369 (696)
                      ....       .....|.+.|.+++|+|||++|++|+.||.|++||+.+++....+..+...         ...   .. 
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---------~~~---~~-  294 (408)
T 4a11_B          228 QHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCN---------NSK---KG-  294 (408)
T ss_dssp             TTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCC---------CCS---SC-
T ss_pred             ccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccc---------ccc---cc-
Confidence            2110       111358999999999999999999999999999999887654333222000         000   00 


Q ss_pred             ecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee
Q 005459          370 MSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI  449 (696)
Q Consensus       370 ~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  449 (696)
                          ..                   ..........++.++.++.+++|++..+..                    ...+.
T Consensus       295 ----~~-------------------~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--------------------~~~~~  331 (408)
T 4a11_B          295 ----LK-------------------FTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ--------------------ITMLK  331 (408)
T ss_dssp             ----CC-------------------CEECCSSSSCEEEEEETTEEEEEETTTCCE--------------------EEEEC
T ss_pred             ----ce-------------------eEEecCCCceEEEEecCCEEEEEECcCCcc--------------------eeeec
Confidence                00                   001111133455566788899999866554                    45677


Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       450 ~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                      +|..+|.+++|+|||++||+|+.||.+ +|++.+++
T Consensus       332 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          332 GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred             cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence            899999999999999999999999999 99998875

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.95  E-value=8.9e-26  Score=238.25  Aligned_cols=285  Identities=11%  Similarity=0.107  Sum_probs=201.2

Q ss_pred             CCceEEEEEeCCcEE-EEEc----cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCC---CcEEEEEecCcEE
Q 005459           20 SSQQIIYFKVNNGLL-LIAS----PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD---TKLIAVVTSSLYL   91 (696)
Q Consensus        20 ~~~~~v~fs~dg~ll-a~~~----~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPD---g~~lav~t~dg~l   91 (696)
                      +...-++|+|+|..| ++++    +++|+||+.. .+.......     ..+.+.+.+++|+||   +++|++++.||.|
T Consensus        19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~-~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i   92 (357)
T 3i2n_A           19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQ-HGDLKLLRE-----IEKAKPIKCGTFGATSLQQRYLATGDFGGNL   92 (357)
T ss_dssp             SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEEC-SSSEEEEEE-----EEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred             CceEEEEEcCCCceEEEecCccCCCcEEEEEeCC-CCcccceee-----ecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence            355668999999654 4553    6799999996 333222111     123467899999999   6999999999999


Q ss_pred             EEEEEEecC-cccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--------eeeCCCeEEEEecCCcEEEEecCCc
Q 005459           92 HIFKVQITE-KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--------IVSDNKHMLLGLSDGSLYSISWKGE  162 (696)
Q Consensus        92 ~l~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--------~~~~~~~llv~t~~g~i~~~~w~~~  162 (696)
                      ++|++..+. .....                       ..+...|.+        +.++++.+++++.||.|++|+....
T Consensus        93 ~iwd~~~~~~~~~~~-----------------------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~  149 (357)
T 3i2n_A           93 HIWNLEAPEMPVYSV-----------------------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK  149 (357)
T ss_dssp             EEECTTSCSSCSEEE-----------------------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSC
T ss_pred             EEEeCCCCCccEEEE-----------------------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCC
Confidence            999997554 11111                       122223333        3567889999999999998654432


Q ss_pred             cccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCc
Q 005459          163 FYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGL  242 (696)
Q Consensus       163 ~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~  242 (696)
                      ........                               .........+.++.+.+      .++++|+.+++++.++.+
T Consensus       150 ~~~~~~~~-------------------------------~~~~~~~~~v~~~~~~~------~~~~~~~~l~~~~~d~~i  192 (357)
T 3i2n_A          150 DDPVANME-------------------------------PVQGENKRDCWTVAFGN------AYNQEERVVCAGYDNGDI  192 (357)
T ss_dssp             SSCSEEEC-------------------------------CCTTSCCCCEEEEEEEC------CCC-CCCEEEEEETTSEE
T ss_pred             CCcceecc-------------------------------ccCCCCCCceEEEEEEe------ccCCCCCEEEEEccCCeE
Confidence            21111000                               00011123466655432      257899999999999999


Q ss_pred             eeeeeeeccee--cCCCCeEE-EEEcC---CCcEEEEEecCCeEEEEEccCCCceeeEEe-----eccCCCCCCCCCCeE
Q 005459          243 KLAEFIKIDKE--LGSGDAVC-ASIAP---EQQILAVGTRRGVVELYDLAESASLIRTVS-----LYDWGYSMDDTGPVS  311 (696)
Q Consensus       243 ~~~~~~~~~~~--~~~~~~v~-v~~sp---~~~~la~g~~dg~v~vw~~~~~~~~~~~~~-----~~~~~~~~~h~g~V~  311 (696)
                      ++||...++..  ..|...+. ++|+|   ++++|++|+.||.|++||+++ .+....+.     .        |.+.|.
T Consensus       193 ~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~--------~~~~v~  263 (357)
T 3i2n_A          193 KLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKA--------HKSTVW  263 (357)
T ss_dssp             EEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEEEC--------CSSCEE
T ss_pred             EEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeeccCC--------CcCCEE
Confidence            99998766543  45666776 99999   999999999999999999987 54444443     5        999999


Q ss_pred             EEEECCCCC-eEEEEEcCCcEEEEEccCC-------------------eeEEEeecccccceecccccCCCCCCcccee-
Q 005459          312 CIAWTPDNS-AFAVGWKSRGLTVWSVSGC-------------------RLMSTIRQISLSSISSPIVKPNQDCKYEPLM-  370 (696)
Q Consensus       312 ~l~~spdg~-~lasg~~Dg~v~vW~~~~~-------------------~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~-  370 (696)
                      +++|+|+|. +|++|+.||.|++||+..+                   .++.++.+| ...|++++|+|++    +.++ 
T Consensus       264 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~----~~l~~  338 (357)
T 3i2n_A          264 QVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS-TQPISSLDWSPDK----RGLCV  338 (357)
T ss_dssp             EEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC-SSCEEEEEECSSS----TTEEE
T ss_pred             EEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC-CCCeeEEEEcCCC----CeEEE
Confidence            999999999 8999999999999999743                   456777777 6779999999988    6666 


Q ss_pred             cce---eeEEEcCCCce
Q 005459          371 SGT---SMMQWDEYGYR  384 (696)
Q Consensus       371 sg~---~~~~W~~~~~~  384 (696)
                      +|+   .+++|+....+
T Consensus       339 s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          339 CSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEETTSEEEEEEECC--
T ss_pred             EecCCCcEEEEECCCcc
Confidence            555   77777776544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.94  E-value=1.2e-25  Score=235.37  Aligned_cols=264  Identities=14%  Similarity=0.057  Sum_probs=195.4

Q ss_pred             CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc----e---ecCCCCeEE-EEEcC--CCcEEEEE
Q 005459          205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----K---ELGSGDAVC-ASIAP--EQQILAVG  274 (696)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~----~---~~~~~~~v~-v~~sp--~~~~la~g  274 (696)
                      .+|...|.+++          ++|||+.+++++.|+++++|+.....    .   +.+|...+. ++|+|  ++++|++|
T Consensus         8 ~gH~~~v~~~~----------~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~   77 (351)
T 3f3f_A            8 SGHDDLVHDVV----------YDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASA   77 (351)
T ss_dssp             CCCSSCEEEEE----------ECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEE
T ss_pred             cccccceeEEE----------EcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEE
Confidence            45677788876          67899999999999999999987542    1   257888887 99999  69999999


Q ss_pred             ecCCeEEEEEccCCC--------ceeeEEeeccCCCCCCCCCCeEEEEECCC--CCeEEEEEcCCcEEEEEccCCeeEEE
Q 005459          275 TRRGVVELYDLAESA--------SLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCRLMST  344 (696)
Q Consensus       275 ~~dg~v~vw~~~~~~--------~~~~~~~~~~~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg~v~vW~~~~~~~~~~  344 (696)
                      +.||+|++||++...        +.+..+..        |.+.|.+++|+|+  ++.|++|+.||.|++||+..++.+..
T Consensus        78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  149 (351)
T 3f3f_A           78 SYDKTVKLWEEDPDQEECSGRRWNKLCTLND--------SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRS  149 (351)
T ss_dssp             ETTSCEEEEEECTTSCTTSSCSEEEEEEECC--------CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTC
T ss_pred             cCCCeEEEEecCCCcccccccCcceeeeecc--------cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcc
Confidence            999999999998732        34555666        9999999999999  99999999999999999987765443


Q ss_pred             ee------------cccccceecccccCCCCCCccceecce---eeEEEcCCCceE--EEEecCCcceEEE--Eec-c--
Q 005459          345 IR------------QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL--YAIEEGSSERVLI--FSF-G--  402 (696)
Q Consensus       345 l~------------~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l--~~~~~~~~~~v~~--~~~-~--  402 (696)
                      +.            ..+...+.+++|+|+.. ....++++.   .+..|....+++  +....+|...|..  +++ +  
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~  228 (351)
T 3f3f_A          150 WTLTSEMKVLSIPPANHLQSDFCLSWCPSRF-SPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR  228 (351)
T ss_dssp             CEEEEEEESCSCCCSSCSCCCEEEEECCCSS-SCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred             ccccccccccccccCCcccceeEEEeccCCC-CCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence            32            12256788999999721 115666665   666677666654  6677788888844  445 4  


Q ss_pred             --eeeeeccCCCCceeeeeeecCCeEEEEecCCCC------------------------ccee--EEeecCeeeecCCCc
Q 005459          403 --KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD------------------------ELKI--LHLNLPVSYISQNWP  454 (696)
Q Consensus       403 --~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~------------------------~~~w--~~~~~~~~~~~~~~~  454 (696)
                        +.+++++.|+.+++|++..+.............                        ...|  ...+....+.+|..+
T Consensus       229 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  308 (351)
T 3f3f_A          229 WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGE  308 (351)
T ss_dssp             SSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSC
T ss_pred             cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccccc
Confidence              789999999999999998764322111100000                        0011  223345567789999


Q ss_pred             eEEEEEcCCCCEEEEEeCCccE-EEEccCC-ceEe
Q 005459          455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQK-KWRV  487 (696)
Q Consensus       455 I~~va~s~dG~~la~ag~dG~i-~w~~~sg-~w~~  487 (696)
                      |.+++|+|||++||+|+.||.+ +|++.++ +|+.
T Consensus       309 v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~  343 (351)
T 3f3f_A          309 VWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC  343 (351)
T ss_dssp             EEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred             EEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence            9999999999999999999999 9999876 3443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.94  E-value=9.4e-25  Score=226.61  Aligned_cols=270  Identities=15%  Similarity=0.206  Sum_probs=199.2

Q ss_pred             eEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcc
Q 005459           23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS  102 (696)
Q Consensus        23 ~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~  102 (696)
                      ..|++|++| +||++.|++|+|||.. .+..+..+.-.    .+.+.+.+++|+|||++||+++.||.|++|+++.++..
T Consensus        29 ~~l~WS~~~-~lAvg~D~tV~iWd~~-tg~~~~~~~~~----~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           29 NLVDWSSGN-VLAVALDNSVYLWSAS-SGDILQLLQME----QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             BCEEECTTS-EEEEEETTEEEEEETT-TCCEEEEEECC----STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eEEEECCCC-EEEEEeCCEEEEEECC-CCCEEEEEEec----CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE
Confidence            558999987 8888899999999995 55544443321    12356789999999999999999999999998644321


Q ss_pred             cccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccc
Q 005459          103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS  182 (696)
Q Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~  182 (696)
                      ..                       +.++...+.++..++..+++++.++.+..+..........               
T Consensus       103 ~~-----------------------~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~---------------  144 (318)
T 4ggc_A          103 RN-----------------------MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA---------------  144 (318)
T ss_dssp             EE-----------------------EECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE---------------
T ss_pred             EE-----------------------ecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEE---------------
Confidence            11                       1234445667778888999999999987754332211100               


Q ss_pred             cccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-------cC
Q 005459          183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-------LG  255 (696)
Q Consensus       183 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-------~~  255 (696)
                                          ....+...+..          +.+.++|+.+++++.|+++++||...++..       ..
T Consensus       145 --------------------~~~~~~~~~~~----------~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  194 (318)
T 4ggc_A          145 --------------------TLSGHSQEVCG----------LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ  194 (318)
T ss_dssp             --------------------EEECCSSCEEE----------EEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECC
T ss_pred             --------------------EEcCccCceEE----------EEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecc
Confidence                                01122223333          457889999999999999999998765421       45


Q ss_pred             CCCeEE-EEEcCCCc-E--EEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE--cCC
Q 005459          256 SGDAVC-ASIAPEQQ-I--LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW--KSR  329 (696)
Q Consensus       256 ~~~~v~-v~~sp~~~-~--la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~--~Dg  329 (696)
                      |...+. ++++|++. +  +++|+.+++|++|+... ..... ...        |...+..+.|+|++..+++++  .|+
T Consensus       195 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~-~~~~~-~~~--------~~~~v~~~~~~~~~~~~~~~sg~~d~  264 (318)
T 4ggc_A          195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS-GACLS-AVD--------AHSQVCSILWSPHYKELISGHGFAQN  264 (318)
T ss_dssp             CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT-CCEEE-EEE--------CSSCEEEEEEETTTTEEEEEECTTTC
T ss_pred             cCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc-ccccc-ccc--------ceeeeeeeeecccccceEEEEEcCCC
Confidence            666776 89998755 3  35678899999999886 44333 334        678899999999999888765  799


Q ss_pred             cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCC
Q 005459          330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY  381 (696)
Q Consensus       330 ~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~  381 (696)
                      .|++||+.+++++.++++| .+.|++++|+|++    +.++||+   ++++|++.
T Consensus       265 ~i~iwd~~~~~~~~~l~gH-~~~V~~l~~spdg----~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          265 QLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDG----ATVASAAADETLRLWRCF  314 (318)
T ss_dssp             CEEEEETTTCCEEEEECCC-SSCEEEEEECTTS----SCEEEEETTTEEEEECCS
T ss_pred             EEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCC----CEEEEEecCCeEEEEECC
Confidence            9999999999999999998 7889999999998    7777665   66777654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.6e-25  Score=228.21  Aligned_cols=273  Identities=13%  Similarity=0.177  Sum_probs=216.8

Q ss_pred             ccccceeEEEee-eCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCC
Q 005459          128 FAEKGLSVSNIV-SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP  206 (696)
Q Consensus       128 ~~~~~~~v~~~~-~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~  206 (696)
                      +.++...|.+++ ++++.+++++.||.|++|+.+......                                    ....
T Consensus        14 l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~------------------------------------~~~~   57 (313)
T 3odt_A           14 LKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGT------------------------------------VVYT   57 (313)
T ss_dssp             ECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEE------------------------------------EEEE
T ss_pred             hhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEE------------------------------------Eeec
Confidence            345556666654 677899999999999997654321110                                    0112


Q ss_pred             CcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc------eecCCCCeEE-EEEcCCCcEEEEEecCCe
Q 005459          207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID------KELGSGDAVC-ASIAPEQQILAVGTRRGV  279 (696)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~v~-v~~sp~~~~la~g~~dg~  279 (696)
                      +...|.++          .++|+|+.+++++.|+.+++|+.....      .+.+|...+. ++|  ++++|++|+.||.
T Consensus        58 ~~~~v~~~----------~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~  125 (313)
T 3odt_A           58 GQGFLNSV----------CYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKT  125 (313)
T ss_dssp             CSSCEEEE----------EEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred             CCccEEEE----------EECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCC
Confidence            23345554          478899999999999999999876432      2256888777 888  6789999999999


Q ss_pred             EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccc
Q 005459          280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV  358 (696)
Q Consensus       280 v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~  358 (696)
                      |++||  . ......+..        |.++|.+++|+| +++.|++++.|+.|++||  .......+...+...+.+++|
T Consensus       126 i~~~d--~-~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~  192 (313)
T 3odt_A          126 AKVWK--E-GSLVYNLQA--------HNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAV  192 (313)
T ss_dssp             EEEEE--T-TEEEEEEEC--------CSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEE
T ss_pred             EEEEc--C-CcEEEeccc--------CCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEE
Confidence            99999  3 667777887        999999999998 999999999999999999  556677777744788999999


Q ss_pred             cCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCC
Q 005459          359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED  433 (696)
Q Consensus       359 sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~  433 (696)
                      +|++    . ++++.   .+.+|+..+++++....+|...+..+.+  ...+++++.|+.+++|++..++.         
T Consensus       193 ~~~~----~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~---------  258 (313)
T 3odt_A          193 VDDG----H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL---------  258 (313)
T ss_dssp             EETT----E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCE---------
T ss_pred             cCCC----e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCce---------
Confidence            9997    6 66665   8999999999999999999999855544  33699999999999999876654         


Q ss_pred             CCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEe
Q 005459          434 TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV  487 (696)
Q Consensus       434 ~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~  487 (696)
                                 ...+..|..+|.+++|+|||+ +++++.||.+ +|++.++++..
T Consensus       259 -----------~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          259 -----------KQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             -----------EEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred             -----------eEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence                       456678888999999999999 5579999999 99999987643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.94  E-value=4.6e-26  Score=237.88  Aligned_cols=241  Identities=15%  Similarity=0.125  Sum_probs=180.9

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC-ceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCC
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSR  329 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg  329 (696)
                      .+|.+.|. ++|+|++++||+|+.|++|+|||+.+.. ..+.++.+        |.++|.+++|+|  +|+.||+|+.|+
T Consensus        10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~g--------H~~~V~~v~~~~~~~~~~l~s~s~D~   81 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRG--------HEGPVWQVAWAHPMYGNILASCSYDR   81 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEEC--------CSSCEEEEEECCGGGSSCEEEEETTS
T ss_pred             ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcC--------CCccEEEEEeCCCCCCCEEEEEECCC
Confidence            57899888 9999999999999999999999998722 24667777        999999999986  499999999999


Q ss_pred             cEEEEEccCCe--eEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceE---EEEecCCcceE--EEE
Q 005459          330 GLTVWSVSGCR--LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL---YAIEEGSSERV--LIF  399 (696)
Q Consensus       330 ~v~vW~~~~~~--~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l---~~~~~~~~~~v--~~~  399 (696)
                      +|++||+.++.  ...++.+| ...|.+++|+|+.  ....+++|+   ++++|+..+...   .....+|...+  +.+
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~h-~~~V~~v~~~p~~--~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~  158 (316)
T 3bg1_A           82 KVIIWREENGTWEKSHEHAGH-DSSVNSVCWAPHD--YGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSW  158 (316)
T ss_dssp             CEEEECCSSSCCCEEEEECCC-SSCCCEEEECCTT--TCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEE
T ss_pred             EEEEEECCCCcceEEEEccCC-CCceEEEEECCCC--CCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEE
Confidence            99999998763  56677777 7789999999983  116788876   899999876532   33445677666  444


Q ss_pred             ec------------------ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEc
Q 005459          400 SF------------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAAS  461 (696)
Q Consensus       400 ~~------------------~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s  461 (696)
                      ++                  ++.+++++.|+++++|++..+...                 +....+.+|..+|++++|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-----------------~~~~~l~~h~~~V~~v~~s  221 (316)
T 3bg1_A          159 APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-----------------KEEQKLEAHSDWVRDVAWA  221 (316)
T ss_dssp             CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-----------------EEEECCBCCSSCEEEEECC
T ss_pred             ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-----------------ceeeecccCCCceEEEEec
Confidence            44                  257999999999999998543220                 0134567899999999999


Q ss_pred             CCC----CEEEEEeCCccE-EEEccCC---ceEecCCccceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCC
Q 005459          462 KDG----MFLAVAGLHGLI-LYDIRQK---KWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       462 ~dG----~~la~ag~dG~i-~w~~~sg---~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      |++    ++||+|+.||.+ +|++.+.   +|...  ......-.|..++|.+  +.|+++     +.+..+|+|+..
T Consensus       222 p~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~--~~~~~~~~v~~v~~sp~g~~las~-----~~D~~v~lw~~~  292 (316)
T 3bg1_A          222 PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPK--LLHKFNDVVWHVSWSITANILAVS-----GGDNKVTLWKES  292 (316)
T ss_dssp             CCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCC--EEEECSSCEEEEEECTTTCCEEEE-----ESSSCEEEEEEC
T ss_pred             CCCCCCCceEEEEcCCCeEEEEEccCccccchhhh--hhhcCCCcEEEEEEcCCCCEEEEE-----cCCCeEEEEEEC
Confidence            997    899999999999 9998762   33210  0111122477889974  566666     234689999864

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=2.3e-25  Score=240.06  Aligned_cols=224  Identities=13%  Similarity=0.131  Sum_probs=164.4

Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeecce--------ecCCCCeEE-EEEcC--------CCcEEEEEecCCeEEEEEccC
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK--------ELGSGDAVC-ASIAP--------EQQILAVGTRRGVVELYDLAE  287 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~v~-v~~sp--------~~~~la~g~~dg~v~vw~~~~  287 (696)
                      ++.++++.+++++.|+++++|+...++.        +.+|.+.|. ++|+|        |+++||+|+.|++|+|||+.+
T Consensus        96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A           96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred             ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence            4567888999999999999999876532        268999998 99998        899999999999999999987


Q ss_pred             CCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEEcCCcEEEEEccCCeeEEEeec-------------------
Q 005459          288 SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQ-------------------  347 (696)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~~Dg~v~vW~~~~~~~~~~l~~-------------------  347 (696)
                       ......+..        |.++|.+++|+|++. +|++|+.|++|++||+.+++...++..                   
T Consensus       176 -~~~~~~~~~--------~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~  246 (393)
T 4gq1_A          176 -EGPILAGYP--------LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN  246 (393)
T ss_dssp             -TEEEEEEEE--------CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred             -CceeeeecC--------CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence             666666777        899999999999874 899999999999999987654433221                   


Q ss_pred             -----ccccceeccccc-CCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEE--------------------E
Q 005459          348 -----ISLSSISSPIVK-PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--------------------I  398 (696)
Q Consensus       348 -----~~~~~v~~~~~s-p~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~--------------------~  398 (696)
                           .+...+.++.|+ |++    +.+++++   ++++|++..++....+..|...+.                    .
T Consensus       247 ~~~~~~~~~~v~~v~~~~~dg----~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (393)
T 4gq1_A          247 TCHSSGIASSLANVRWIGSDG----SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC  322 (393)
T ss_dssp             -----CCSSSCSEEEEETTTT----CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCE
T ss_pred             eeecccccccceeeeeecCCC----CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEE
Confidence                 114456667765 666    7777776   899999987766555544433321                    1


Q ss_pred             Eec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCcc
Q 005459          399 FSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL  475 (696)
Q Consensus       399 ~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~  475 (696)
                      +.+   +..+++++.|+++++|++..+..                    .....+|..+|++++|||||++||+|+.+|.
T Consensus       323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~--------------------~~~~~~~~~~V~svafspdG~~LA~as~~Gv  382 (393)
T 4gq1_A          323 PHPRYMDYFATAHSQHGLIQLINTYEKDS--------------------NSIPIQLGMPIVDFCWHQDGSHLAIATEGSV  382 (393)
T ss_dssp             ECSSCTTEEEEEETTTTEEEEEETTCTTC--------------------CEEEEECSSCEEEEEECTTSSEEEEEESSEE
T ss_pred             EccCCCCEEEEEECCCCEEEEEECCCCcE--------------------EEEecCCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            112   34577889999999999877665                    4456788899999999999999999999998


Q ss_pred             EEEEcc
Q 005459          476 ILYDIR  481 (696)
Q Consensus       476 i~w~~~  481 (696)
                      ++|.+.
T Consensus       383 ~lvrL~  388 (393)
T 4gq1_A          383 LLTRLM  388 (393)
T ss_dssp             EEEEEG
T ss_pred             EEEEEe
Confidence            877653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.9e-25  Score=242.22  Aligned_cols=255  Identities=9%  Similarity=0.101  Sum_probs=193.9

Q ss_pred             EEEEe-CCcEEEEeeccCCceeeeeee---cce----e-cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccC--CCce
Q 005459          224 FVLYS-NGQLMSCSVSKKGLKLAEFIK---IDK----E-LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE--SASL  291 (696)
Q Consensus       224 ~~~s~-dG~~~~~~~~d~~~~~~~~~~---~~~----~-~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~--~~~~  291 (696)
                      ++++| ||+.+++++.|+++++|+...   +..    . .+|...+. ++|+|++++||+|+.||+|++||++.  .++.
T Consensus        69 ~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~  148 (437)
T 3gre_A           69 SAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESE  148 (437)
T ss_dssp             EEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTE
T ss_pred             EEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCce
Confidence            45889 999999999999999999876   221    1 25777777 99999999999999999999999951  1444


Q ss_pred             eeEEeecc---CCCCC-CCCCCeEEEE--ECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc-cccceecccccCCCCC
Q 005459          292 IRTVSLYD---WGYSM-DDTGPVSCIA--WTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDC  364 (696)
Q Consensus       292 ~~~~~~~~---~~~~~-~h~g~V~~l~--~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~-~~~~v~~~~~sp~~~~  364 (696)
                      .+.+....   ....+ ++.+.+.++.  ++||+..|++|+.|+.|++||+.+++++.++.++ +...|++++|+|++  
T Consensus       149 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~--  226 (437)
T 3gre_A          149 VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC--  226 (437)
T ss_dssp             EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS--
T ss_pred             eeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC--
Confidence            44333211   00111 1566788888  7799999999999999999999999999999983 37789999999998  


Q ss_pred             Cccceecce---eeEEEcCCCceEEEEec-CCcceEEEE----ec---ceeeeeccCCCCceeeeeeecCCeEEEEecCC
Q 005459          365 KYEPLMSGT---SMMQWDEYGYRLYAIEE-GSSERVLIF----SF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED  433 (696)
Q Consensus       365 ~~~~l~sg~---~~~~W~~~~~~l~~~~~-~~~~~v~~~----~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~  433 (696)
                        ..+++|+   ++++|+.+.++++.... +|...|..+    .+   ++.+++++.|+++++|++..+... ..+.+++
T Consensus       227 --~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~  303 (437)
T 3gre_A          227 --CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQ-YAFINSD  303 (437)
T ss_dssp             --CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEE-EEEESSS
T ss_pred             --CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEE-EEEEcCC
Confidence              8888887   79999999999988875 677788655    33   668999999999999998765532 2233322


Q ss_pred             CCc--ceeEEe---ecCeeeec--CCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          434 TDE--LKILHL---NLPVSYIS--QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       434 ~~~--~~w~~~---~~~~~~~~--~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                      ...  ..+...   .....+.+  |..+|++++|+ +|++|++|+.||.+ +||+.+++
T Consensus       304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~  361 (437)
T 3gre_A          304 EQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS  361 (437)
T ss_dssp             SCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred             CCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence            111  111000   00112344  88899999999 88999999999999 99998876

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=3.5e-25  Score=236.14  Aligned_cols=276  Identities=9%  Similarity=0.041  Sum_probs=195.3

Q ss_pred             EEEEEeCCcEEEEeeccC-------Cceeeeeeecce-------------ecCCCCeEEEEEcCCCcEEEEEe-------
Q 005459          223 LFVLYSNGQLMSCSVSKK-------GLKLAEFIKIDK-------------ELGSGDAVCASIAPEQQILAVGT-------  275 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~d~-------~~~~~~~~~~~~-------------~~~~~~~v~v~~sp~~~~la~g~-------  275 (696)
                      .++|+|||+++++++.+.       .+++|+......             +.+|.+++. +++++++.+++|+       
T Consensus        19 sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~-s~~~~~~~~~~g~~~~~~~l   97 (365)
T 4h5i_A           19 GAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPT-AIDASKGIILVGCNENSTKI   97 (365)
T ss_dssp             EEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCC-EEEEETTEEEEECCCCHHHH
T ss_pred             EEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceE-EEEeCCCEEEEEECCCccEE
Confidence            456899999999987654       378998753321             134555543 3345566777664       


Q ss_pred             ----cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE--EcCCcEEEEEccCCeeEEEeeccc
Q 005459          276 ----RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG--WKSRGLTVWSVSGCRLMSTIRQIS  349 (696)
Q Consensus       276 ----~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg--~~Dg~v~vW~~~~~~~~~~l~~~~  349 (696)
                          .|+++|+|+++.....+......+......+...+++++|||||++||++  +.|++|++||+.+++++.++..  
T Consensus        98 ~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~--  175 (365)
T 4h5i_A           98 TQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET--  175 (365)
T ss_dssp             HHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC--
T ss_pred             EEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC--
Confidence                57889999988744545444443333333466679999999999998755  4789999999999999988864  


Q ss_pred             ccceecccccCCCCCCccceecce--eeEEEcCCCceEEE--EecCCcceE--EEEec-ceeeeeccCCC----Cceeee
Q 005459          350 LSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYA--IEEGSSERV--LIFSF-GKCCLNRGVSG----MTYARQ  418 (696)
Q Consensus       350 ~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~--~~~~~~~~v--~~~~~-~~~~~s~~~d~----~~~~w~  418 (696)
                      ...|.+++|+|++    +.+++++  .+..|+...++...  ...+|...+  ++|++ ++.+++++.|+    .++.|+
T Consensus       176 ~~~V~~v~fspdg----~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~  251 (365)
T 4h5i_A          176 RGEVKDLHFSTDG----KVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS  251 (365)
T ss_dssp             SSCCCEEEECTTS----SEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred             CCceEEEEEccCC----ceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence            4569999999999    8888776  56666655554433  334677777  55555 88899988887    455666


Q ss_pred             eeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE-ecCCccceee
Q 005459          419 VIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQK  496 (696)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~-~f~~~~~e~~  496 (696)
                      +.......                .....+.+|..+|.+++|||||++||+|+.||.| +||+.+++-. .+.. .  +.
T Consensus       252 ~~~~~~~~----------------~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~-g--H~  312 (365)
T 4h5i_A          252 IKSGNTSV----------------LRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ-A--HS  312 (365)
T ss_dssp             EETTEEEE----------------EEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT-S--SS
T ss_pred             cccceecc----------------eeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC-c--cc
Confidence            55443211                0123456889999999999999999999999999 9999998742 2221 2  23


Q ss_pred             eEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCC
Q 005459          497 IQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       497 ~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      ..|.+++|.+  .+|+++     +.+..||+|+..
T Consensus       313 ~~V~~v~fSpdg~~laS~-----S~D~tvrvw~ip  342 (365)
T 4h5i_A          313 FAITEVTISPDSTYVASV-----SAANTIHIIKLP  342 (365)
T ss_dssp             SCEEEEEECTTSCEEEEE-----ETTSEEEEEECC
T ss_pred             CCEEEEEECCCCCEEEEE-----eCCCeEEEEEcC
Confidence            4588999974  467766     455799999874

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.94  E-value=2.6e-25  Score=242.97  Aligned_cols=284  Identities=13%  Similarity=0.156  Sum_probs=194.2

Q ss_pred             ceEEEEEeC-CcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcC-CCcEEEEEecCcEEEEEEEEe
Q 005459           22 QQIIYFKVN-NGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP-DTKLIAVVTSSLYLHIFKVQI   98 (696)
Q Consensus        22 ~~~v~fs~d-g~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsP-Dg~~lav~t~dg~l~l~~l~~   98 (696)
                      +.-++|+|. +.+||+++ |++|+|||.. .......+.    ...+.+.+.+++|+| |+++|++++.||+|++||++.
T Consensus       122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~-~~~~~~~~~----~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~  196 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFG-IKDKPTFIK----GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG  196 (435)
T ss_dssp             EEEEEECSSCTTCEEEEETTSCEEEECSS-CCSCCEEEC----CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEEECC-CCCceeEEE----ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence            444889994 67898884 7899999985 322211111    112457899999999 789999999999999999853


Q ss_pred             cCcccccCCCCCCCceeeeeeEEEeeeccccccceeE--EEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCC
Q 005459           99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS  176 (696)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~  176 (696)
                      .........+                     .....+  .++.+++..+++|+.+|.|++|+.++....           
T Consensus       197 ~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~-----------  244 (435)
T 4e54_B          197 NILRVFASSD---------------------TINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW-----------  244 (435)
T ss_dssp             CEEEEEECCS---------------------SCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC-----------
T ss_pred             CceeEEeccC---------------------CCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE-----------
Confidence            3211111000                     011111  245678889999999999998765432111           


Q ss_pred             cccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCc-EEEEeeccCCceeeeeeeccee--
Q 005459          177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE--  253 (696)
Q Consensus       177 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~~~~~~~~~~--  253 (696)
                                                .+..+...|.++.          ++|+++ ++++++.|+++++||....+..  
T Consensus       245 --------------------------~~~~h~~~v~~v~----------~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~  288 (435)
T 4e54_B          245 --------------------------NLRMHKKKVTHVA----------LNPCCDWFLATASVDQTVKIWDLRQVRGKAS  288 (435)
T ss_dssp             --------------------------CSBCCSSCEEEEE----------ECTTCSSEEEEEETTSBCCEEETTTCCSSSC
T ss_pred             --------------------------EEecccceEEeee----------ecCCCceEEEEecCcceeeEEecccccccce
Confidence                                      1223455677765          566765 6778889999999998654321  


Q ss_pred             ----cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE--
Q 005459          254 ----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW--  326 (696)
Q Consensus       254 ----~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~--  326 (696)
                          .+|...|. ++|+|++++|++|+.||+|++||+.+ +.....+.......  .....+....|+|++..+++++  
T Consensus       289 ~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  365 (435)
T 4e54_B          289 FLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ-WDCPLGLIPHPHRH--FQHLTPIKAAWHPRYNLIVVGRYP  365 (435)
T ss_dssp             CSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS-SSSEEEECCCCCCC--CSSSCCCBCEECSSSSCEEEECCC
T ss_pred             EEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC-CccceEEecccccc--cccceeEEEEEcCCCCEEEEEEcC
Confidence                46888887 99999999999999999999999988 55555554411100  0011233456666666666654  


Q ss_pred             ----------cCCcEEEEEccCCeeEEEeecccccceecc-cccCCCCCCccceecce--eeEEEcCCCceE
Q 005459          327 ----------KSRGLTVWSVSGCRLMSTIRQISLSSISSP-IVKPNQDCKYEPLMSGT--SMMQWDEYGYRL  385 (696)
Q Consensus       327 ----------~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~-~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l  385 (696)
                                .++.|++||..+++++.++.+++...|.++ +|+|++    ..+++|.  ++++|+++.++.
T Consensus       366 d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg----~~lasg~d~~i~iW~~~~gk~  433 (435)
T 4e54_B          366 DPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG----DTLASAMGYHILIWSQQEART  433 (435)
T ss_dssp             CTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTS----SCEEEECSSEEEECCCC----
T ss_pred             CCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC----CEEEEEcCCcEEEEECCcCee
Confidence                      346799999999999999887657778887 699998    8888776  888999887653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.93  E-value=9.1e-25  Score=238.53  Aligned_cols=274  Identities=14%  Similarity=0.200  Sum_probs=215.1

Q ss_pred             ccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcc
Q 005459          130 EKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISS  209 (696)
Q Consensus       130 ~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~  209 (696)
                      .+...|.|+..+++.+++|+.||.|++|+...  ....                                  ..+..+..
T Consensus       131 ~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~--~~~~----------------------------------~~~~~h~~  174 (435)
T 1p22_A          131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNT--LECK----------------------------------RILTGHTG  174 (435)
T ss_dssp             SSCCCEEEEECCSSEEEEEESSSCEEEEESSS--CCEE----------------------------------EEECCCSS
T ss_pred             CCCCcEEEEEECCCEEEEEeCCCeEEEEeCCC--CeEE----------------------------------EEEcCCCC
Confidence            34457889999999999999999999865432  1111                                  01123445


Q ss_pred             cEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEc
Q 005459          210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDL  285 (696)
Q Consensus       210 ~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~  285 (696)
                      .|.++.            .||+.+++++.|+++++||..+++..   .+|...+. ++|++  ++|++|+.||+|++||+
T Consensus       175 ~v~~l~------------~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~  240 (435)
T 1p22_A          175 SVLCLQ------------YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDM  240 (435)
T ss_dssp             CEEEEE------------CCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEEC
T ss_pred             cEEEEE------------ECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeC
Confidence            566654            38899999999999999998876543   67888777 88874  59999999999999999


Q ss_pred             cCCCcee---eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459          286 AESASLI---RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       286 ~~~~~~~---~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      .+ ....   ..+.+        |.+.|.+++|  +|+.|++|+.||.|++||+.+++++.++.+| ...|.++.++  +
T Consensus       241 ~~-~~~~~~~~~~~~--------~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~  306 (435)
T 1p22_A          241 AS-PTDITLRRVLVG--------HRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH-KRGIACLQYR--D  306 (435)
T ss_dssp             SS-SSCCEEEEEECC--------CSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEE--T
T ss_pred             CC-CCCceeeeEecC--------CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC-CCcEEEEEeC--C
Confidence            87 4433   45555        9999999999  8899999999999999999999999999988 6778888884  3


Q ss_pred             CCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcce
Q 005459          363 DCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK  438 (696)
Q Consensus       363 ~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~  438 (696)
                          ..+++|+   .+++|+..+++++....+|...|.++.+ ++.+++++.|+.+++|++..+....       .+.. 
T Consensus       307 ----~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~-------~~~~-  374 (435)
T 1p22_A          307 ----RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR-------APAG-  374 (435)
T ss_dssp             ----TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTT-------SCTT-
T ss_pred             ----CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCcc-------cccc-
Confidence                5677776   8999999999999999999999988888 8899999999999999987665310       0000 


Q ss_pred             eEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       439 w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                         ......+.+|..+|.+++|  ||++|++|+.||.+ +||+.++.
T Consensus       375 ---~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          375 ---TLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             ---TTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred             ---chheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence               0013456789999999999  89999999999999 99998764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.93  E-value=1.1e-24  Score=233.23  Aligned_cols=287  Identities=13%  Similarity=0.135  Sum_probs=206.2

Q ss_pred             CCcccEEEEEEccCcceEEEEEeCC-cEEEEeeccCCceeeeeeeccee-----cCCCCeEE-EEEcC-CCcEEEEEecC
Q 005459          206 PISSAIIWLELCLPMRLLFVLYSNG-QLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAP-EQQILAVGTRR  277 (696)
Q Consensus       206 ~~~~~i~~~~~~~~~~~~~~~s~dG-~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~-v~~sp-~~~~la~g~~d  277 (696)
                      .+...|.++.          ++|+| +++++++.|+++++|+....+..     .+|...+. ++|+| ++++|++|+.|
T Consensus        71 ~h~~~v~~~~----------~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  140 (383)
T 3ei3_B           71 PFDRRVTSLE----------WHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR  140 (383)
T ss_dssp             CCSSCEEEEE----------ECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred             CCCCCEEEEE----------ECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence            4455566654          78888 89999999999999998765432     36888887 99999 78999999999


Q ss_pred             CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceeccc
Q 005459          278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI  357 (696)
Q Consensus       278 g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~  357 (696)
                      |+|++||+..  .....+....     .|.+.|.+++|+||++.|++|+.|+.|++||+. ++.+.++.+| ...|.+++
T Consensus       141 ~~i~iwd~~~--~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h-~~~v~~~~  211 (383)
T 3ei3_B          141 GATTLRDFSG--SVIQVFAKTD-----SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLH-KAKVTHAE  211 (383)
T ss_dssp             TEEEEEETTS--CEEEEEECCC-----CSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECS-SSCEEEEE
T ss_pred             CEEEEEECCC--CceEEEeccC-----CCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccC-CCcEEEEE
Confidence            9999999985  4555555411     256889999999999999999999999999994 5678888887 67899999


Q ss_pred             ccCCCCCCcc-ceecce---eeEEEcCCC----ceEEEEecCCcceEEE--Eec--ceeeeeccCCCCceeeeeeecCCe
Q 005459          358 VKPNQDCKYE-PLMSGT---SMMQWDEYG----YRLYAIEEGSSERVLI--FSF--GKCCLNRGVSGMTYARQVIYGEDR  425 (696)
Q Consensus       358 ~sp~~~~~~~-~l~sg~---~~~~W~~~~----~~l~~~~~~~~~~v~~--~~~--~~~~~s~~~d~~~~~w~~~~~~~~  425 (696)
                      |+|++    + .+++|+   .+++|+...    ++++... +|...+..  +++  ++.+++++.|+.+++|++..+...
T Consensus       212 ~~~~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~  286 (383)
T 3ei3_B          212 FNPRC----DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP  286 (383)
T ss_dssp             ECSSC----TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSC
T ss_pred             ECCCC----CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccc
Confidence            99998    6 778776   899999987    6666666 67888844  444  678999999999999998877652


Q ss_pred             EEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE-ecCCccceeeeEEEeEe
Q 005459          426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLL  503 (696)
Q Consensus       426 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~-~f~~~~~e~~~~v~~~~  503 (696)
                      ..+.. +......+  ............++..++|+|||++  +|+.||.+ +||+.+++.. .+....  ..-.+..++
T Consensus       287 ~~~~~-~~~~~~~~--~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~--~~~~~~~~~  359 (383)
T 3ei3_B          287 DQIII-HPHRQFQH--LTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPN--AAGIISLNK  359 (383)
T ss_dssp             SEEEE-CCBCCCTT--SCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTT--BCSCCCEEE
T ss_pred             ccccc-cccccccc--ccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCC--CCceEEEEE
Confidence            11111 00000000  0000000111345666888888888  88899999 9999988753 222111  122244567


Q ss_pred             ee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459          504 WL--GKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       504 w~--~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      |.  +.+|+++  .    +..|++|+.+
T Consensus       360 ~s~~g~~l~s~--s----d~~i~iw~~~  381 (383)
T 3ei3_B          360 FSPTGDVLASG--M----GFNILIWNRE  381 (383)
T ss_dssp             ECTTSSEEEEE--E----TTEEEEEECC
T ss_pred             EecCccEEEEe--c----CCcEEEEecC
Confidence            86  4556555  2    2679999874

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.93  E-value=4.6e-25  Score=237.12  Aligned_cols=318  Identities=15%  Similarity=0.150  Sum_probs=218.5

Q ss_pred             cCCceeeeeeecce---ecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeec-----cCCCCCCCCC
Q 005459          239 KKGLKLAEFIKIDK---ELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLY-----DWGYSMDDTG  308 (696)
Q Consensus       239 d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~-----~~~~~~~h~g  308 (696)
                      +.++++|+....+.   ..+|.+.+. ++|+| ++++||+|+.||+|++|++.+ ......+...     ......+|.+
T Consensus        22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  100 (408)
T 4a11_B           22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLEN-SSRQSYYTCKAVCSIGRDHPDVHRY  100 (408)
T ss_dssp             HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCC-CSSSSCEEECEEEEECTTCTTCCSS
T ss_pred             cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCC-CcccceEeccccccccccccccCCC
Confidence            34466676654432   267888887 99999 999999999999999999987 4433333210     0111224999


Q ss_pred             CeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCce
Q 005459          309 PVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR  384 (696)
Q Consensus       309 ~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~  384 (696)
                      +|.+++|+| +++.|++|+.||.|++||+.+++....+..  ...+.++.++|.+. +...+++|.   .+.+|+..+++
T Consensus       101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~d~~~~~  177 (408)
T 4a11_B          101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF--EETVYSHHMSPVST-KHCLVAVGTRGPKVQLCDLKSGS  177 (408)
T ss_dssp             CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECSSCS-SCCEEEEEESSSSEEEEESSSSC
T ss_pred             cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC--CCceeeeEeecCCC-CCcEEEEEcCCCeEEEEeCCCcc
Confidence            999999999 888999999999999999999998888763  45688888888652 114666665   89999999999


Q ss_pred             EEEEecCCcceEEEEec---ce-eeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEE
Q 005459          385 LYAIEEGSSERVLIFSF---GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA  460 (696)
Q Consensus       385 l~~~~~~~~~~v~~~~~---~~-~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~  460 (696)
                      .+....+|...|..+.+   ++ .+++++.|+.+++|++..+...+..........    .........+|..+|.+++|
T Consensus       178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~  253 (408)
T 4a11_B          178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK----SQAVESANTAHNGKVNGLCF  253 (408)
T ss_dssp             CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS----CCCTTTSSCSCSSCEEEEEE
T ss_pred             eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccccc----ceeeccccccccCceeEEEE
Confidence            88888899998855544   55 488999999999999877654322221111100    00112234578899999999


Q ss_pred             cCCCCEEEEEeCCccE-EEEccCCceEecCCcc-ceeeeE-EE-eEee-eCcEEEEEEeecCCCeEEEEEeeCCCCCccc
Q 005459          461 SKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDIT-QEQKIQ-SK-GLLW-LGKIIVVCNYIDSSNTYELLFYPRYHLDQSS  535 (696)
Q Consensus       461 s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~-~e~~~~-v~-~~~w-~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~  535 (696)
                      +|+|++|++++.||.+ +||+.+++-....... ...... .. .... ....+++++     .+..|++|+.....   
T Consensus       254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~v~d~~~~~---  325 (408)
T 4a11_B          254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP-----YGSTIAVYTVYSGE---  325 (408)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE-----ETTEEEEEETTTCC---
T ss_pred             cCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe-----cCCEEEEEECcCCc---
Confidence            9999999999999999 9999987643211100 011000 11 1111 233444442     23589999875211   


Q ss_pred             eeEEee-cCCc--cEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459          536 LLCRKS-LLAK--PIVMDVYEDYILVTYRPFDVHIFHVKL  572 (696)
Q Consensus       536 ~~~~~~-~~~~--~l~~~~~~~~llv~~~d~~~~l~~~~~  572 (696)
                      .+.... ...+  -+.+++.+.+|++++.|+.+++|++..
T Consensus       326 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          326 QITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred             ceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence            222211 1121  267778899999999999999999864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.93  E-value=5.5e-24  Score=229.76  Aligned_cols=273  Identities=16%  Similarity=0.200  Sum_probs=200.4

Q ss_pred             EEeCCc-EEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCccccc
Q 005459           27 FKVNNG-LLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQI  105 (696)
Q Consensus        27 fs~dg~-lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~  105 (696)
                      +++++. +++++.+++|+||+.. .+.........     +.+.+.+++|+||+++||+++.||.|++|++..+..... 
T Consensus        99 ~~~s~~~l~~~~~d~~v~lw~~~-~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-  171 (401)
T 4aez_A           99 LDWSNLNVVAVALERNVYVWNAD-SGSVSALAETD-----ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT-  171 (401)
T ss_dssp             EEECTTSEEEEEETTEEEEEETT-TCCEEEEEECC-----TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-
T ss_pred             EeecCCCEEEEECCCeEEEeeCC-CCcEeEeeecC-----CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE-
Confidence            555544 5666678999999996 54443333221     346789999999999999999999999999864321110 


Q ss_pred             CCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCccccccccc
Q 005459          106 GGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHF  185 (696)
Q Consensus       106 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s  185 (696)
                                            +..+...|.++..+++.+++++.+|.|++|+.........                  
T Consensus       172 ----------------------~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------------------  211 (401)
T 4aez_A          172 ----------------------MAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIG------------------  211 (401)
T ss_dssp             ----------------------ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE------------------
T ss_pred             ----------------------ecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceee------------------
Confidence                                  2244557778888889999999999999865542111100                  


Q ss_pred             CCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-
Q 005459          186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-  261 (696)
Q Consensus       186 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-  261 (696)
                                       .+..+...|.++.          ++|||+.+++++.|+++++||....+..   .+|...+. 
T Consensus       212 -----------------~~~~~~~~v~~~~----------~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~  264 (401)
T 4aez_A          212 -----------------TLQGHSSEVCGLA----------WRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA  264 (401)
T ss_dssp             -----------------EEECCSSCEEEEE----------ECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCE
T ss_pred             -----------------EEcCCCCCeeEEE----------EcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEE
Confidence                             1123344566655          7789999999999999999998765433   56777776 


Q ss_pred             EEEcCCC-cEEEEEe--cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE--EcCCcEEEEEc
Q 005459          262 ASIAPEQ-QILAVGT--RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG--WKSRGLTVWSV  336 (696)
Q Consensus       262 v~~sp~~-~~la~g~--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg--~~Dg~v~vW~~  336 (696)
                      ++|+|++ .++++|+  .||.|++||+.+ ++.+..+.         |.+.|.+++|+|+|+.|+++  +.||.|++|++
T Consensus       265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~-~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~  334 (401)
T 4aez_A          265 VAWCPWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVD---------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY  334 (401)
T ss_dssp             EEECTTSTTEEEEECCTTTCEEEEEETTT-CCEEEEEE---------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEE
T ss_pred             EEECCCCCCEEEEecCCCCCEEEEEECCC-CCEEEEEe---------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEec
Confidence            9999975 6777765  799999999987 67776664         56789999999999999995  48999999999


Q ss_pred             cCCeeEEE--eecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEE
Q 005459          337 SGCRLMST--IRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI  388 (696)
Q Consensus       337 ~~~~~~~~--l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~  388 (696)
                      .++.....  +.+| ...|.+++|+|++    ..+++++   .+++|+..+++.+..
T Consensus       335 ~~~~~~~~~~~~~h-~~~v~~~~~s~dg----~~l~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          335 SSSGLTKQVDIPAH-DTRVLYSALSPDG----RILSTAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             ETTEEEEEEEEECC-SSCCCEEEECTTS----SEEEEECTTSEEEEEECCC------
T ss_pred             CCccceeEEEecCC-CCCEEEEEECCCC----CEEEEEeCCCcEEEEECCCCccccc
Confidence            98665544  5566 6789999999998    7777776   788888887765543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.6e-24  Score=228.78  Aligned_cols=246  Identities=17%  Similarity=0.123  Sum_probs=195.4

Q ss_pred             CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeee--ecce---ecCCCCeEE-EEEcCC--CcEEEEEec
Q 005459          205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI--KIDK---ELGSGDAVC-ASIAPE--QQILAVGTR  276 (696)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~--~~~~---~~~~~~~v~-v~~sp~--~~~la~g~~  276 (696)
                      ..|...|.+++          ++|||+.+++++.|+++++|+..  ..+.   +.+|...+. ++|+|+  +++||+|+.
T Consensus         8 ~~h~~~v~~~~----------~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~   77 (379)
T 3jrp_A            8 NAHNELIHDAV----------LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY   77 (379)
T ss_dssp             EECCCCEEEEE----------ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             cCCcccEEEEE----------EcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc
Confidence            34566677765          78899999999999999999987  3322   367888887 999987  999999999


Q ss_pred             CCeEEEEEccCCCc--eeeEEeeccCCCCCCCCCCeEEEEECCC--CCeEEEEEcCCcEEEEEccCCe--eEEEeecccc
Q 005459          277 RGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISL  350 (696)
Q Consensus       277 dg~v~vw~~~~~~~--~~~~~~~~~~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg~v~vW~~~~~~--~~~~l~~~~~  350 (696)
                      ||+|++||+.+ ++  .+..+..        |.+.|.+++|+|+  |+.|++|+.|+.|++||+....  ....+.+| .
T Consensus        78 dg~v~iwd~~~-~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~  147 (379)
T 3jrp_A           78 DGKVLIWKEEN-GRWSQIAVHAV--------HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH-A  147 (379)
T ss_dssp             TSCEEEEEEET-TEEEEEEEECC--------CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC-T
T ss_pred             CCEEEEEEcCC-CceeEeeeecC--------CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC-C
Confidence            99999999987 54  5556666        9999999999999  9999999999999999998763  34455566 6


Q ss_pred             cceecccccC-------------CCCCCccceecce---eeEEEcCCCc----eEEEEecCCcceEEEE--ec----cee
Q 005459          351 SSISSPIVKP-------------NQDCKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSSERVLIF--SF----GKC  404 (696)
Q Consensus       351 ~~v~~~~~sp-------------~~~~~~~~l~sg~---~~~~W~~~~~----~l~~~~~~~~~~v~~~--~~----~~~  404 (696)
                      ..|.+++|+|             ++    ..+++|+   .+++|+..+.    .+.....+|...|..+  ++    ++.
T Consensus       148 ~~v~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~  223 (379)
T 3jrp_A          148 IGVNSASWAPATIEEDGEHNGTKES----RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY  223 (379)
T ss_dssp             TCEEEEEECCCC----------CTT----CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred             CceEEEEEcCccccccccccCCCCC----CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCe
Confidence            7899999999             45    7777776   8999998654    3556777888888444  44    377


Q ss_pred             eeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEcc-C
Q 005459          405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR-Q  482 (696)
Q Consensus       405 ~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~-s  482 (696)
                      +++++.|+.+++|++..+.....               ........|..+|.+++|+|||++||+++.||.+ +|++. .
T Consensus       224 l~s~~~dg~i~iwd~~~~~~~~~---------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          224 LASVSQDRTCIIWTQDNEQGPWK---------------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             EEEEETTSCEEEEEESSTTSCCE---------------EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             EEEEeCCCEEEEEeCCCCCccce---------------eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            99999999999999887653100               0011223578899999999999999999999999 99998 4


Q ss_pred             CceEecC
Q 005459          483 KKWRVFG  489 (696)
Q Consensus       483 g~w~~f~  489 (696)
                      ++|+.+.
T Consensus       289 ~~~~~~~  295 (379)
T 3jrp_A          289 GKWEPAG  295 (379)
T ss_dssp             TEEEEEE
T ss_pred             Ccccccc
Confidence            5666544

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.4e-26  Score=247.71  Aligned_cols=304  Identities=11%  Similarity=0.051  Sum_probs=212.2

Q ss_pred             EEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEE
Q 005459          136 SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE  215 (696)
Q Consensus       136 ~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~  215 (696)
                      .++++||..++.++.|++|+    +++...                                     .+.+|...+..+.
T Consensus        21 v~~SpDG~~iASas~D~TV~----d~~~~~-------------------------------------~l~gh~~~v~~V~   59 (588)
T 2j04_A           21 LTWARDGTLYLTTFPDISIG----QPKYAK-------------------------------------DINCNSKNLFHVK   59 (588)
T ss_dssp             EEECTTSCEEEECSSSEEEE----EECCCS-------------------------------------CCSSBGGGTEEEE
T ss_pred             EEECCCCCEEEEEcCCceee----cccccc-------------------------------------eecCCCccEEEEE
Confidence            37788999999999999997    232221                                     1123445565544


Q ss_pred             EccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceee
Q 005459          216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIR  293 (696)
Q Consensus       216 ~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~  293 (696)
                                |+|||       .++++++|+....... ..|.+.|. ++|||||++||+++.||+|++|+.+.   ++.
T Consensus        60 ----------FsPdg-------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~  119 (588)
T 2j04_A           60 ----------EFPLE-------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLT  119 (588)
T ss_dssp             ----------EECCC-------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEE
T ss_pred             ----------ECCCC-------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eee
Confidence                      78998       4666677765433322 25667676 99999999999999999999999532   333


Q ss_pred             EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe-------eEEEe----ecccccceecccccCCC
Q 005459          294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-------LMSTI----RQISLSSISSPIVKPNQ  362 (696)
Q Consensus       294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~-------~~~~l----~~~~~~~v~~~~~sp~~  362 (696)
                      .+.. ..+.   ....|.+++|||||++||+|+.||+|++||+.++.       .+.++    .+| .+.|.+++|+|++
T Consensus       120 ~l~~-~~~~---~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh-~~~V~sVawSPdg  194 (588)
T 2j04_A          120 NLDS-KGNL---SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGS-KDWVTHIVWYEDV  194 (588)
T ss_dssp             ECCC-SSCS---TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTC-CCCEEEEEEETTE
T ss_pred             eccC-CCcc---ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccc-cccEEEEEEcCCc
Confidence            3321 1000   12369999999999999999999999999999885       36777    344 6789999999984


Q ss_pred             CCCccceecce---eeEEEcCCCceE---EEEe-cCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCC
Q 005459          363 DCKYEPLMSGT---SMMQWDEYGYRL---YAIE-EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT  434 (696)
Q Consensus       363 ~~~~~~l~sg~---~~~~W~~~~~~l---~~~~-~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~  434 (696)
                            +++++   ++++|+..++++   ...+ .+|...|..+.| ++.+++++ ++++++|++..+..          
T Consensus       195 ------Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~----------  257 (588)
T 2j04_A          195 ------LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSI----------  257 (588)
T ss_dssp             ------EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEE----------
T ss_pred             ------EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeE----------
Confidence                  44444   999999988773   3444 477778855444 78888887 69999999765443          


Q ss_pred             CcceeEEeecCeeee-cCCCceEEEEE--cCCCCEEEEEeCCccEEEEccCCceEecCCccceeeeEEEeEeeeCcEEEE
Q 005459          435 DELKILHLNLPVSYI-SQNWPVQHVAA--SKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVV  511 (696)
Q Consensus       435 ~~~~w~~~~~~~~~~-~~~~~I~~va~--s~dG~~la~ag~dG~i~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~  511 (696)
                                 ..+. +|..+|..++|  +|||+.+++|+++|.-+|....                   +...++..+.
T Consensus       258 -----------~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~d~-------------------~~~spd~~l~  307 (588)
T 2j04_A          258 -----------SSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLEDE-------------------LHVTADNIIA  307 (588)
T ss_dssp             -----------EEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEESSS-------------------EEEECCCSSH
T ss_pred             -----------EEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEeecc-------------------EEECCCceEE
Confidence                       1233 89999999999  9999999999999987776551                   1122333232


Q ss_pred             EEeecCCCeEEEEEeeCC-CCCccceeEEeecCCccEEEEccCCEEEEEE
Q 005459          512 CNYIDSSNTYELLFYPRY-HLDQSSLLCRKSLLAKPIVMDVYEDYILVTY  560 (696)
Q Consensus       512 ~~~~~~~~~~~lr~y~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~  560 (696)
                      +.     .+..+++|+.. +..+. +-+...+.+  ++++|+|..+++++
T Consensus       308 a~-----~d~~v~lW~~~g~~l~~-~~~~~~I~~--va~SPdG~~lA~~~  349 (588)
T 2j04_A          308 PY-----LEKKFKKWSTIWNEFNN-YETTLVIHG--ISLSPDGYSIAIVY  349 (588)
T ss_dssp             HH-----HHHHHHHTTTTTTSSSS-SCCEEEEEE--EEECTTSSEEEEEE
T ss_pred             EE-----cCCEEEEEECCCCceee-eccceEEEE--EEECCCCCEEEEEE
Confidence            21     24678888774 32221 112222333  78889988888765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.93  E-value=1e-24  Score=235.49  Aligned_cols=268  Identities=13%  Similarity=0.126  Sum_probs=207.7

Q ss_pred             EEEEeCCcEEEE-eeccCCceeeeeeecc-------eecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCC----
Q 005459          224 FVLYSNGQLMSC-SVSKKGLKLAEFIKID-------KELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESA----  289 (696)
Q Consensus       224 ~~~s~dG~~~~~-~~~d~~~~~~~~~~~~-------~~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~----  289 (696)
                      +.++++...+++ ++.++.+++|+.....       .+.+|...+. ++|+| ++++||+|+.||+|++|++.+..    
T Consensus        40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~  119 (402)
T 2aq5_A           40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP  119 (402)
T ss_dssp             EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC
T ss_pred             EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc
Confidence            456666665554 5678999999974421       1257888888 99999 99999999999999999998732    


Q ss_pred             --ceeeEEeeccCCCCCCCCCCeEEEEECCCC-CeEEEEEcCCcEEEEEccCCeeEEEe--ecccccceecccccCCCCC
Q 005459          290 --SLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCRLMSTI--RQISLSSISSPIVKPNQDC  364 (696)
Q Consensus       290 --~~~~~~~~~~~~~~~~h~g~V~~l~~spdg-~~lasg~~Dg~v~vW~~~~~~~~~~l--~~~~~~~v~~~~~sp~~~~  364 (696)
                        +.+..+.+        |.+.|.+++|+|+| +.|++|+.|+.|++||+.+++.+.++  .+| ...|.+++|+|++  
T Consensus       120 ~~~~~~~~~~--------h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~--  188 (402)
T 2aq5_A          120 LREPVITLEG--------HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH-PDTIYSVDWSRDG--  188 (402)
T ss_dssp             BCSCSEEEEC--------CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC-CSCEEEEEECTTS--
T ss_pred             cCCceEEecC--------CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC-CCceEEEEECCCC--
Confidence              45677777        99999999999998 69999999999999999999999999  556 7789999999998  


Q ss_pred             Cccceecce---eeEEEcCCCceEEEEe-cCCcce-E--EEEec-ceeeeec---cCCCCceeeeeeecCCeEEEEecCC
Q 005459          365 KYEPLMSGT---SMMQWDEYGYRLYAIE-EGSSER-V--LIFSF-GKCCLNR---GVSGMTYARQVIYGEDRLLVVQSED  433 (696)
Q Consensus       365 ~~~~l~sg~---~~~~W~~~~~~l~~~~-~~~~~~-v--~~~~~-~~~~~s~---~~d~~~~~w~~~~~~~~~~~~~~~~  433 (696)
                        ..+++++   .+++|++++++.+... .+|... +  ..+++ ++.++++   +.|+.+++|++..+...+       
T Consensus       189 --~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~-------  259 (402)
T 2aq5_A          189 --ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL-------  259 (402)
T ss_dssp             --SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS-------
T ss_pred             --CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc-------
Confidence              8888887   8999999999988887 677654 4  56666 7888888   799999999987765410       


Q ss_pred             CCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEe-CCccE-EEEccCCc--eEecCCccceeeeEEEeEeeeCcEE
Q 005459          434 TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDIRQKK--WRVFGDITQEQKIQSKGLLWLGKII  509 (696)
Q Consensus       434 ~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag-~dG~i-~w~~~sg~--w~~f~~~~~e~~~~v~~~~w~~~~l  509 (696)
                                 ......|...|.+++|+|||++|+++| .||.+ +|++.+++  .+.+...  .....+.+++|.++..
T Consensus       260 -----------~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~--~~~~~v~~~~~sp~~~  326 (402)
T 2aq5_A          260 -----------SLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF--SSKESQRGMGYMPKRG  326 (402)
T ss_dssp             -----------EEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE--CCSSCCSEEEECCGGG
T ss_pred             -----------eEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc--ccCCcccceEEecccc
Confidence                       111225677899999999999997655 79999 99999886  3332211  1123367889986644


Q ss_pred             EEEEeecCCCeEEEEEeeCC
Q 005459          510 VVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       510 v~~~~~~~~~~~~lr~y~~~  529 (696)
                      +.+     ..+..+|+|...
T Consensus       327 ~~~-----s~~~~~~~~~l~  341 (402)
T 2aq5_A          327 LEV-----NKCEIARFYKLH  341 (402)
T ss_dssp             SCG-----GGTEEEEEEEEE
T ss_pred             cce-----ecceeEEEEEcC
Confidence            333     233588999664

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.93  E-value=1.2e-24  Score=233.57  Aligned_cols=275  Identities=13%  Similarity=0.109  Sum_probs=210.8

Q ss_pred             cCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc------e---ecCCCCeEE-EEEcCC----C-
Q 005459          204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID------K---ELGSGDAVC-ASIAPE----Q-  268 (696)
Q Consensus       204 ~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~------~---~~~~~~~v~-v~~sp~----~-  268 (696)
                      +..|...|.+++|+          |  +.+++++.|+++++|+....+      .   +.+|...+. ++|+|+    + 
T Consensus        12 ~~~h~~~i~~~~~~----------~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~   79 (397)
T 1sq9_A           12 GKAHDADIFSVSAC----------N--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAF   79 (397)
T ss_dssp             SSCSSSCEEEEEEC----------S--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTE
T ss_pred             hhhhhcCeEEEEec----------C--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCc
Confidence            34567788887743          3  678888888899999987654      1   267888877 999999    9 


Q ss_pred             --cEEEEEecCCeEEEEEccCCCce-----eeEEeeccCCCCCCC-----CCCeEEEEEC----CCCCe-EEEEEcCCcE
Q 005459          269 --QILAVGTRRGVVELYDLAESASL-----IRTVSLYDWGYSMDD-----TGPVSCIAWT----PDNSA-FAVGWKSRGL  331 (696)
Q Consensus       269 --~~la~g~~dg~v~vw~~~~~~~~-----~~~~~~~~~~~~~~h-----~g~V~~l~~s----pdg~~-lasg~~Dg~v  331 (696)
                        ++|++|+.||+|++|++.+ .+.     +..+..        |     .+.|.+++|+    |+|+. |++|+.||.|
T Consensus        80 ~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i  150 (397)
T 1sq9_A           80 ELCLVATTSFSGDLLFYRITR-EDETKKVIFEKLDL--------LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTT  150 (397)
T ss_dssp             EEEEEEEEETTSCEEEEEEEE-CTTTCCEEEEEECC--------SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCE
T ss_pred             cccEEEEEcCCCCEEEEEccC-Ccccccccceeecc--------cccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcE
Confidence              9999999999999999987 554     666666        7     5899999999    99999 9999999999


Q ss_pred             EEEEccC------CeeEE-----Eeec------ccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecC
Q 005459          332 TVWSVSG------CRLMS-----TIRQ------ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG  391 (696)
Q Consensus       332 ~vW~~~~------~~~~~-----~l~~------~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~  391 (696)
                      ++||+..      +..+.     ++.+      .+...+.+++|+|++     .+++|.   .+.+|+..+++.+.....
T Consensus       151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~~~~~  225 (397)
T 1sq9_A          151 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-----LIATGFNNGTVQISELSTLRPLYNFES  225 (397)
T ss_dssp             EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-----EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-----eEEEEeCCCcEEEEECCCCceeEEEec
Confidence            9999988      66665     6642      226779999999974     455554   899999999999988888


Q ss_pred             ---C---cceEE--EEec-ceeeeeccCC---CCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec---------
Q 005459          392 ---S---SERVL--IFSF-GKCCLNRGVS---GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS---------  450 (696)
Q Consensus       392 ---~---~~~v~--~~~~-~~~~~s~~~d---~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~---------  450 (696)
                         |   ...+.  ++++ ++.+++++.|   +.+++|++..+..                    ...+.+         
T Consensus       226 ~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~--------------------~~~~~~~~~~~~~~~  285 (397)
T 1sq9_A          226 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER--------------------IGSLSVPTHSSQASL  285 (397)
T ss_dssp             CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE--------------------EEEECBC--------
T ss_pred             cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc--------------------cceeccCcccccccc
Confidence               8   78884  4455 7889999999   9999999876543                    233444         


Q ss_pred             ----CCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE-ecCCc----cc-------------eeeeEEEeEeeeCc
Q 005459          451 ----QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDI----TQ-------------EQKIQSKGLLWLGK  507 (696)
Q Consensus       451 ----~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~-~f~~~----~~-------------e~~~~v~~~~w~~~  507 (696)
                          |..+|.+++|+|+|++||+++.||.+ +||+.+++.. .+...    .+             .+...|..++|.++
T Consensus       286 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~  365 (397)
T 1sq9_A          286 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK  365 (397)
T ss_dssp             CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred             cccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccc
Confidence                89999999999999999999999999 9999987632 22200    11             00334789999866


Q ss_pred             ------------EEEEEEeecCCCeEEEEEeeCC
Q 005459          508 ------------IIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       508 ------------~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                                  .++++     +.+..|++|+..
T Consensus       366 g~~~~~~~~~~~~l~s~-----~~dg~i~iw~~~  394 (397)
T 1sq9_A          366 GWRSGMGADLNESLCCV-----CLDRSIRWFREA  394 (397)
T ss_dssp             TTSBSTTCTTSCEEEEE-----ETTTEEEEEEEE
T ss_pred             cccccccccccceEEEe-----cCCCcEEEEEcC
Confidence                        56655     344789999763

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.93  E-value=8.9e-24  Score=219.24  Aligned_cols=234  Identities=17%  Similarity=0.180  Sum_probs=182.1

Q ss_pred             CcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEecCCeEEEE
Q 005459          207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELY  283 (696)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~~dg~v~vw  283 (696)
                      +...|.++.          ++|+|+.+++++.|+++++|+..+++..   .+|...+. +++++++++++|+.++.+++|
T Consensus        66 ~~~~V~~v~----------~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~-~~~~~~~~l~s~~~~~~~~~~  134 (318)
T 4ggc_A           66 PGEYISSVA----------WIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG-SLSWNSYILSSGSRSGHIHHH  134 (318)
T ss_dssp             TTCCEEEEE----------ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEEETTEEEEEETTSEEEEE
T ss_pred             CCCeEEEEE----------ECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEE-EeecCCCEEEEEecCCceEee
Confidence            444576655          7899999999999999999998876554   56766554 456678899999999999999


Q ss_pred             EccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee----EEEeecccccceeccccc
Q 005459          284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL----MSTIRQISLSSISSPIVK  359 (696)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~----~~~l~~~~~~~v~~~~~s  359 (696)
                      +.......+..+.+        |...+.+++|+++|+.|++++.|++|++||+.+++.    ......+ ...|.+++++
T Consensus       135 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~~  205 (318)
T 4ggc_A          135 DVRVAEHHVATLSG--------HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-QGAVKAVAWC  205 (318)
T ss_dssp             ETTSSSCEEEEEEC--------CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCC-CSCEEEEEEC
T ss_pred             ecCCCceeEEEEcC--------ccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeeccc-CCceEEEEec
Confidence            99875566777777        999999999999999999999999999999976542    2233333 5678888888


Q ss_pred             CCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeee--eccCCCCceeeeeeecCCeEEEEec
Q 005459          360 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCL--NRGVSGMTYARQVIYGEDRLLVVQS  431 (696)
Q Consensus       360 p~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~--s~~~d~~~~~w~~~~~~~~~~~~~~  431 (696)
                      |++. +.-.+++|.   ++++|+............ ...+  ..+.+ ++.++  +++.|+.+++|++.+++.       
T Consensus       206 ~~~~-~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~-------  276 (318)
T 4ggc_A          206 PWQS-NVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK-------  276 (318)
T ss_dssp             TTST-TEEEEEECTTTCEEEEEETTTCCEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE-------
T ss_pred             CCCC-cEEEEEecCCCCEEEEEecccccccccccc-eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE-------
Confidence            8762 111223443   789999988877766543 3344  55555 55444  456899999999876654       


Q ss_pred             CCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459          432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       432 ~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s  482 (696)
                                   ...+.+|..+|++++|+|||++||+||.||++ +||+..
T Consensus       277 -------------~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          277 -------------VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             -------------EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             -------------EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence                         45778999999999999999999999999999 999854

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.93  E-value=9.8e-25  Score=238.28  Aligned_cols=245  Identities=11%  Similarity=0.160  Sum_probs=183.3

Q ss_pred             CcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc--------------eecCCC------------CeE
Q 005459          207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--------------KELGSG------------DAV  260 (696)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~--------------~~~~~~------------~~v  260 (696)
                      +...|.+++          ++|||+++++++.|+.+++|+....+              .+.+|.            ..+
T Consensus        27 ~~~~V~~v~----------~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V   96 (447)
T 3dw8_B           27 EADIISTVE----------FNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKI   96 (447)
T ss_dssp             GGGSEEEEE----------ECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred             ccCcEEEEE----------ECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCce
Confidence            455677765          78899999999999999999987554              236786            666


Q ss_pred             E-EEEcCCC--cEEEEEecCCeEEEEEccCCCceeeE------------------------Eee-------c-cCCCCCC
Q 005459          261 C-ASIAPEQ--QILAVGTRRGVVELYDLAESASLIRT------------------------VSL-------Y-DWGYSMD  305 (696)
Q Consensus       261 ~-v~~sp~~--~~la~g~~dg~v~vw~~~~~~~~~~~------------------------~~~-------~-~~~~~~~  305 (696)
                      . ++|+|++  .+|++|+.||+|++|++.. ......                        +..       . ...+..+
T Consensus        97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (447)
T 3dw8_B           97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISE-RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA  175 (447)
T ss_dssp             CEEEECCCCSSSEEEEEECSSCEEEEEEEE-EEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred             EEEEEcCCCCcceEEEeCCCCeEEEEeccc-ccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence            6 9999998  8999999999999999875 222100                        000       0 0001124


Q ss_pred             CCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc-CCeeEEE-------eecccccceecccccCCCCCCccceecce---e
Q 005459          306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMST-------IRQISLSSISSPIVKPNQDCKYEPLMSGT---S  374 (696)
Q Consensus       306 h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~-~~~~~~~-------l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~  374 (696)
                      |.+.|.+++|+|||+.|++| .|+.|++||+. ++..+..       +.+| ...|.+++|+|++.   ..+++|+   +
T Consensus       176 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~---~~l~s~~~dg~  250 (447)
T 3dw8_B          176 HTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEEL-TEVITAAEFHPNSC---NTFVYSSSKGT  250 (447)
T ss_dssp             CSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGC-CCCEEEEEECSSCT---TEEEEEETTSC
T ss_pred             CCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccccccc-CcceEEEEECCCCC---cEEEEEeCCCe
Confidence            99999999999999999999 79999999998 4555553       4455 67899999999852   5677776   8


Q ss_pred             eEEEcCCCceE----EEEecCCcc------------eE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCC
Q 005459          375 MMQWDEYGYRL----YAIEEGSSE------------RV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD  435 (696)
Q Consensus       375 ~~~W~~~~~~l----~~~~~~~~~------------~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~  435 (696)
                      +++|+..++++    ...+.+|..            .|  +++++ ++.+++++. +.+++|++.....           
T Consensus       251 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~-----------  318 (447)
T 3dw8_B          251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR-----------  318 (447)
T ss_dssp             EEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS-----------
T ss_pred             EEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc-----------
Confidence            99999998886    677777765            67  45555 788999888 9999999876332           


Q ss_pred             cceeEEeecCeeeecCCCc---------------eEEEEEcCCCCEEEEEeCCccE-EEEccCCceEe
Q 005459          436 ELKILHLNLPVSYISQNWP---------------VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV  487 (696)
Q Consensus       436 ~~~w~~~~~~~~~~~~~~~---------------I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~  487 (696)
                              ....+.+|...               +..++|+|||++||+|+.||.+ +||+.+++...
T Consensus       319 --------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~  378 (447)
T 3dw8_B          319 --------PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT  378 (447)
T ss_dssp             --------CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred             --------ccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence                    13445555432               3349999999999999999999 99999987543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.93  E-value=3.7e-24  Score=233.71  Aligned_cols=255  Identities=12%  Similarity=0.198  Sum_probs=210.0

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      .++..||+.+++++.|+++++||..+++..   .+|...+. ++|  ++++||+|+.||+|++||+.+ ++.+.++..  
T Consensus       137 ~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~-~~~~~~~~~--  211 (435)
T 1p22_A          137 YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT-GEMLNTLIH--  211 (435)
T ss_dssp             EEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS-CCEEEEECC--
T ss_pred             EEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC-CcEEEEEcC--
Confidence            345569999999999999999998766543   67888776 776  889999999999999999998 788888887  


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeE---EEeecccccceecccccCCCCCCccceecce---
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM---STIRQISLSSISSPIVKPNQDCKYEPLMSGT---  373 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~---~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---  373 (696)
                            |.+.|.+++|++  ..|++|+.||.|++||+.++...   ..+.+| ...|.++.+  ++    +.+++|+   
T Consensus       212 ------h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~--~~----~~l~s~~~dg  276 (435)
T 1p22_A          212 ------HCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDF--DD----KYIVSASGDR  276 (435)
T ss_dssp             ------CCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCC-SSCEEEEEE--ET----TEEEEEETTS
T ss_pred             ------CCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCC-CCcEEEEEe--CC----CEEEEEeCCC
Confidence                  999999999975  59999999999999999877654   566666 677888888  44    6777776   


Q ss_pred             eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCC
Q 005459          374 SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN  452 (696)
Q Consensus       374 ~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  452 (696)
                      .+.+|+..+++++....+|...+.++.+ ++.+++++.|+++++|++.++..                    ...+.+|.
T Consensus       277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~--------------------~~~~~~h~  336 (435)
T 1p22_A          277 TIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC--------------------LRVLEGHE  336 (435)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCE--------------------EEEECCCS
T ss_pred             eEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCE--------------------EEEEeCCc
Confidence            8999999999999999999999988888 88899999999999999876654                    45677899


Q ss_pred             CceEEEEEcCCCCEEEEEeCCccE-EEEccCCc----------eEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeE
Q 005459          453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK----------WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTY  521 (696)
Q Consensus       453 ~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~----------w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~  521 (696)
                      .+|.+++|  ||++|++|+.||.+ +||+.+++          ...+.    .+.-.|..+.|.+..++++     +.+.
T Consensus       337 ~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----~h~~~v~~l~~~~~~l~s~-----s~Dg  405 (435)
T 1p22_A          337 ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV----EHSGRVFRLQFDEFQIVSS-----SHDD  405 (435)
T ss_dssp             SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC----CCSSCCCCEEECSSCEEEC-----CSSS
T ss_pred             CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc----CCCCCeEEEEeCCCEEEEE-----eCCC
Confidence            99999999  89999999999999 99997754          11111    1122366788888888876     4568


Q ss_pred             EEEEeeCC
Q 005459          522 ELLFYPRY  529 (696)
Q Consensus       522 ~lr~y~~~  529 (696)
                      .|++|+..
T Consensus       406 ~i~iwd~~  413 (435)
T 1p22_A          406 TILIWDFL  413 (435)
T ss_dssp             EEEEEC--
T ss_pred             EEEEEECC
Confidence            99999875

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.6e-24  Score=226.19  Aligned_cols=240  Identities=12%  Similarity=0.118  Sum_probs=190.4

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC-CceeeEEeeccCCCCCCCCCCeEEEEECCC--CCeEEEEEcCC
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSR  329 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg  329 (696)
                      .+|.+.+. ++|+|++++||+|+.||+|++|++... ...+..+.+        |.++|++++|+|+  +++|++|+.||
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~~~~l~s~~~dg   79 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG--------HEGPVWRVDWAHPKFGTILASCSYDG   79 (379)
T ss_dssp             EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC--------CSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecC--------CCCcEEEEEeCCCCCCCEEEEeccCC
Confidence            57888887 999999999999999999999999831 455667777        9999999999987  99999999999


Q ss_pred             cEEEEEccCCe--eEEEeecccccceecccccCC--CCCCccceecce---eeEEEcCCCc--eEEEEecCCcceEE--E
Q 005459          330 GLTVWSVSGCR--LMSTIRQISLSSISSPIVKPN--QDCKYEPLMSGT---SMMQWDEYGY--RLYAIEEGSSERVL--I  398 (696)
Q Consensus       330 ~v~vW~~~~~~--~~~~l~~~~~~~v~~~~~sp~--~~~~~~~l~sg~---~~~~W~~~~~--~l~~~~~~~~~~v~--~  398 (696)
                      .|++||+.+++  .+..+..| ...|.+++|+|+  +    ..++++.   .+++|+....  .......+|...|.  .
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~----~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~  154 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYG----PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS  154 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGC----SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred             EEEEEEcCCCceeEeeeecCC-CcceEEEEeCCCCCC----CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence            99999999987  66677766 678999999998  6    7788776   8999999876  23445567788884  4


Q ss_pred             Eec--------------ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCC-
Q 005459          399 FSF--------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-  463 (696)
Q Consensus       399 ~~~--------------~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~d-  463 (696)
                      +++              ++.+++++.|+.+++|++..+....                .+...+.+|..+|.+++|+|+ 
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------~~~~~~~~h~~~v~~~~~sp~~  218 (379)
T 3jrp_A          155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY----------------VLESTLEGHSDWVRDVAWSPTV  218 (379)
T ss_dssp             ECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEE----------------EEEEEECCCSSCEEEEEECCCC
T ss_pred             EcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce----------------eeEEEEecccCcEeEEEECCCC
Confidence            444              5679999999999999988765421                123456689999999999999 


Q ss_pred             --CCEEEEEeCCccE-EEEccCCc----eEecCCccceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCC
Q 005459          464 --GMFLAVAGLHGLI-LYDIRQKK----WRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       464 --G~~la~ag~dG~i-~w~~~sg~----w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                        |++||+++.||.+ +||+.++.    ...+...  .....+..++|.+  ..+++++     .+..|++|+..
T Consensus       219 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~-----~dg~i~iw~~~  286 (379)
T 3jrp_A          219 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEE--KFPDVLWRASWSLSGNVLALSG-----GDNKVTLWKEN  286 (379)
T ss_dssp             SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSS--CCSSCEEEEEECSSSCCEEEEE-----SSSSEEEEEEE
T ss_pred             CCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccc--cCCCcEEEEEEcCCCCEEEEec-----CCCcEEEEeCC
Confidence              8999999999999 99999873    2332221  1223477889964  4666662     34679999875

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=6.8e-24  Score=217.65  Aligned_cols=206  Identities=12%  Similarity=0.084  Sum_probs=157.8

Q ss_pred             EEEEEeC----CcEEEEeeccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEe--cCCeEEEEEccCCCceeeEEe
Q 005459          223 LFVLYSN----GQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGT--RRGVVELYDLAESASLIRTVS  296 (696)
Q Consensus       223 ~~~~s~d----G~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~--~dg~v~vw~~~~~~~~~~~~~  296 (696)
                      .++++||    |+.++.++.+  +++|+                 + ++++++.++.  .|++|++|++...++.+..+.
T Consensus       116 sla~spd~~~~~~~l~s~g~~--~~v~~-----------------l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~  175 (356)
T 2w18_A          116 ALFCSSDDESEKQVLLKSGNI--KAVLG-----------------L-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF  175 (356)
T ss_dssp             EECC------CCEEEEEEEEE--EEEEE-----------------E-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE
T ss_pred             EEEECCCccccccEEEeCCCe--EEEEe-----------------c-CCCcEEEecccCCCCcEEEEEECCCCceeeeec
Confidence            3557777    7777765533  33332                 2 5677777754  699999999966578888888


Q ss_pred             eccCCCCCCCCCCeEEEEECC---CCCeEEEEEcCCcEEEEEccCCeeEEEeecccc--cceecccccCCCCCCccce--
Q 005459          297 LYDWGYSMDDTGPVSCIAWTP---DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL--SSISSPIVKPNQDCKYEPL--  369 (696)
Q Consensus       297 ~~~~~~~~~h~g~V~~l~~sp---dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~--~~v~~~~~sp~~~~~~~~l--  369 (696)
                      +        |...|+.++|+|   ||.+||+|+.|++|+|||+.+++++++|.+|+.  ..+.+++|+|++    ..+  
T Consensus       176 ~--------~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG----~~lvs  243 (356)
T 2w18_A          176 L--------MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG----LLFIV  243 (356)
T ss_dssp             E--------CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT----EEEEE
T ss_pred             c--------CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC----CEEEE
Confidence            8        999999999999   889999999999999999999999999987633  356667899988    443  


Q ss_pred             ----------ecce---eeEEEcCCCceEEEEe-----cCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEe
Q 005459          370 ----------MSGT---SMMQWDEYGYRLYAIE-----EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQ  430 (696)
Q Consensus       370 ----------~sg~---~~~~W~~~~~~l~~~~-----~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~  430 (696)
                                ++|+   ++++|++.+++++.+.     .+|...++..++ +..+++++.|+++++||+.+++.      
T Consensus       244 ~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~------  317 (356)
T 2w18_A          244 LSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQC------  317 (356)
T ss_dssp             EC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSE------
T ss_pred             eccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcE------
Confidence                      5665   8999999999887665     466666655555 66789999999999999987765      


Q ss_pred             cCCCCcceeEEeecCeeeecCCCceE-EEEEcCCCCEEEEEeCCccE-EEEc
Q 005459          431 SEDTDELKILHLNLPVSYISQNWPVQ-HVAASKDGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       431 ~~~~~~~~w~~~~~~~~~~~~~~~I~-~va~s~dG~~la~ag~dG~i-~w~~  480 (696)
                                    ..++.+|...+. +++|||||++||+|+.|++| +||+
T Consensus       318 --------------l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          318 --------------TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             --------------EEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             --------------EEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence                          456777876554 68999999999999999999 9985

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.93  E-value=8.5e-25  Score=228.85  Aligned_cols=282  Identities=10%  Similarity=0.060  Sum_probs=185.3

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC---ceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEc
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWK  327 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~---~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~  327 (696)
                      .+|.+.|. ++|+|++++||+|+.||+|++|++.+..   .....+.+        |.++|.+++|+|  |+++|++|+.
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~d~~~l~s~~~   79 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRA--------HDSSIVAIDWASPEYGRIIASASY   79 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEEC--------CSSCEEEEEECCGGGCSEEEEEET
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceecc--------CCCcEEEEEEcCCCCCCEEEEEcC
Confidence            68988887 9999999999999999999999998632   34556666        999999999999  7999999999


Q ss_pred             CCcEEEEEccCC---------eeEEEeecccccceecccccCC--CCCCccceecce---eeEEEcCCCceEEEEe----
Q 005459          328 SRGLTVWSVSGC---------RLMSTIRQISLSSISSPIVKPN--QDCKYEPLMSGT---SMMQWDEYGYRLYAIE----  389 (696)
Q Consensus       328 Dg~v~vW~~~~~---------~~~~~l~~~~~~~v~~~~~sp~--~~~~~~~l~sg~---~~~~W~~~~~~l~~~~----  389 (696)
                      ||.|++||+.++         +.+..+.+| ...|.+++|+|+  +    ..+++++   .+++|+..+++.+...    
T Consensus        80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  154 (351)
T 3f3f_A           80 DKTVKLWEEDPDQEECSGRRWNKLCTLNDS-KGSLYSVKFAPAHLG----LKLACLGNDGILRLYDALEPSDLRSWTLTS  154 (351)
T ss_dssp             TSCEEEEEECTTSCTTSSCSEEEEEEECCC-SSCEEEEEECCGGGC----SEEEEEETTCEEEEEECSSTTCTTCCEEEE
T ss_pred             CCeEEEEecCCCcccccccCcceeeeeccc-CCceeEEEEcCCCCC----cEEEEecCCCcEEEecCCChHHhccccccc
Confidence            999999999876         567788777 778999999998  7    7788776   8999998776532221    


Q ss_pred             ---------cCCcceEE--EEec----ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCc
Q 005459          390 ---------EGSSERVL--IFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP  454 (696)
Q Consensus       390 ---------~~~~~~v~--~~~~----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  454 (696)
                               .+|...+.  .+++    ++.+++++.++.+..|+...+...                  ....+.+|..+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~h~~~  216 (351)
T 3f3f_A          155 EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH------------------VAAKLPGHKSL  216 (351)
T ss_dssp             EEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE------------------EEEECCCCCSC
T ss_pred             cccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee------------------eeeecCCCCcc
Confidence                     13444553  3333    567888888888766554333221                  13356689999


Q ss_pred             eEEEEEcCCC----CEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEe-ecCCCeEEEEEeeC
Q 005459          455 VQHVAASKDG----MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNY-IDSSNTYELLFYPR  528 (696)
Q Consensus       455 I~~va~s~dG----~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~-~~~~~~~~lr~y~~  528 (696)
                      |.+++|+|+|    ++||+|+.||.+ +||+.++.-......   .................+.. ........+++|+.
T Consensus       217 i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (351)
T 3f3f_A          217 IRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE---SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSN  293 (351)
T ss_dssp             EEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------------------CCS
T ss_pred             eeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC---cccceeccCCCcccccccccccccccceeeeeccc
Confidence            9999999999    899999999999 999988653322111   10011111222211111111 11112223344433


Q ss_pred             CCCCccceeEEee-cCCcc--EEEEccCCEEEEEEcCceEEEEEEEE
Q 005459          529 YHLDQSSLLCRKS-LLAKP--IVMDVYEDYILVTYRPFDVHIFHVKL  572 (696)
Q Consensus       529 ~~l~~~~~~~~~~-~~~~~--l~~~~~~~~llv~~~d~~~~l~~~~~  572 (696)
                      .   ....+.... ...++  +.+++.+++|++++.|+.+++|++..
T Consensus       294 ~---~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          294 L---QVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             E---EEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             c---cccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence            2   111111111 11122  56677889999999999999999863

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.92  E-value=4.4e-23  Score=216.48  Aligned_cols=273  Identities=10%  Similarity=0.068  Sum_probs=207.6

Q ss_pred             hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCC
Q 005459           66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNK  143 (696)
Q Consensus        66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~  143 (696)
                      +.+.+.+++|+||+++|++++.||.|++|++.........                 ..   ...+...|.  ++.++++
T Consensus        10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~-----------------~~---~~~~~~~v~~~~~~~~~~   69 (342)
T 1yfq_A           10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-----------------LQ---SLRYKHPLLCCNFIDNTD   69 (342)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE-----------------EE---EEECSSCEEEEEEEESSS
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccc-----------------ee---eeecCCceEEEEECCCCC
Confidence            3477899999999999999999999999999855421000                 00   012223343  4566788


Q ss_pred             -eEEEEecCCcEEEEec-CCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCC--CcccEEEEEEccC
Q 005459          144 -HMLLGLSDGSLYSISW-KGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP--ISSAIIWLELCLP  219 (696)
Q Consensus       144 -~llv~t~~g~i~~~~w-~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~  219 (696)
                       .+++++.+|.|++|+. +....  .                                   .+..  +...|.++.    
T Consensus        70 ~~l~~~~~dg~i~~wd~~~~~~~--~-----------------------------------~~~~~~~~~~v~~l~----  108 (342)
T 1yfq_A           70 LQIYVGTVQGEILKVDLIGSPSF--Q-----------------------------------ALTNNEANLGICRIC----  108 (342)
T ss_dssp             EEEEEEETTSCEEEECSSSSSSE--E-----------------------------------ECBSCCCCSCEEEEE----
T ss_pred             cEEEEEcCCCeEEEEEeccCCce--E-----------------------------------eccccCCCCceEEEE----
Confidence             8999999999998655 43211  1                                   1112  455677665    


Q ss_pred             cceEEEEEeCCcEEEEeeccCCceeeeeee---------ccee--cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccC
Q 005459          220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIK---------IDKE--LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE  287 (696)
Q Consensus       220 ~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~---------~~~~--~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~  287 (696)
                            +++ ++.+++++.|+++++|+...         .+..  ..|...+. ++|+|++  +++|+.||.|++||++.
T Consensus       109 ------~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~  179 (342)
T 1yfq_A          109 ------KYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPL  179 (342)
T ss_dssp             ------EET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSC
T ss_pred             ------eCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCc
Confidence                  667 88888899999999999876         4432  33666666 9999988  99999999999999986


Q ss_pred             -CCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCC------eeEEEeeccc--------cc
Q 005459          288 -SASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC------RLMSTIRQIS--------LS  351 (696)
Q Consensus       288 -~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~------~~~~~l~~~~--------~~  351 (696)
                       ..........       .|...|.+++|+| ||+.|++|+.||.+++|++...      ....+++.|.        ..
T Consensus       180 ~~~~~~~~~~~-------~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (342)
T 1yfq_A          180 CEDDNGTIEES-------GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY  252 (342)
T ss_dssp             CTTCCCEEEEC-------SCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCC
T ss_pred             cccccceeeec-------CCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccce
Confidence             3332222222       2888999999999 9999999999999999999876      7777888762        23


Q ss_pred             ceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCC-cceEEEEec-ceeeeeccCCCC-ceeeee
Q 005459          352 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS-SERVLIFSF-GKCCLNRGVSGM-TYARQV  419 (696)
Q Consensus       352 ~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~-~~~v~~~~~-~~~~~s~~~d~~-~~~w~~  419 (696)
                      .|.+++|+|++    ..+++|+   .+.+|+..+++++....+| ...|..+.+ ++.+++++.|++ .+.+..
T Consensus       253 ~i~~~~~s~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          253 PVNSIEFSPRH----KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             CEEEEEECTTT----CCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             eEEEEEEcCCC----CEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEecCCCCeEEEEecCCcccccccc
Confidence            79999999998    8888887   8999999999999999988 888865557 888999999998 665553

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.92  E-value=1.2e-23  Score=228.54  Aligned_cols=270  Identities=15%  Similarity=0.155  Sum_probs=201.0

Q ss_pred             EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe
Q 005459          261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR  340 (696)
Q Consensus       261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~  340 (696)
                      +++||++ ++||+|. |++|+|||+.+ ++..+.+....      |.+.|++|+|+|||++||+|+.||+|++||+.+++
T Consensus       110 ~l~wS~~-n~lAvgl-d~tV~lWd~~t-g~~~~~~~~~~------~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~  180 (420)
T 4gga_A          110 LVDWSSG-NVLAVAL-DNSVYLWSASS-GDILQLLQMEQ------PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK  180 (420)
T ss_dssp             CEEECTT-SEEEEEE-TTEEEEEETTT-CCEEEEEECCS------TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             eEEECCC-CEEEEEe-CCEEEEEECCC-CCEEEEEEecC------CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence            3999986 5899886 99999999998 77777666422      78899999999999999999999999999999999


Q ss_pred             eEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCC-ceEEEEecCCcceEEE--Eec-ceeeeeccCCCC
Q 005459          341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGM  413 (696)
Q Consensus       341 ~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~-~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~  413 (696)
                      ++.++.+| ...+.++.++  +    ..+++|+   .+..|+... ...+..+.+|...+..  +.+ ++.+++++.|+.
T Consensus       181 ~~~~~~~h-~~~v~~~s~~--~----~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~  253 (420)
T 4gga_A          181 RLRNMTSH-SARVGSLSWN--S----YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL  253 (420)
T ss_dssp             EEEEECCC-SSCEEEEEEE--T----TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEEeCC-CCceEEEeeC--C----CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeecccc
Confidence            99999988 6667776653  4    6677776   888998765 4556667788888844  444 889999999999


Q ss_pred             ceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCC-EEEEE--eCCccE-EEEccCCceEecC
Q 005459          414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVA--GLHGLI-LYDIRQKKWRVFG  489 (696)
Q Consensus       414 ~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~-~la~a--g~dG~i-~w~~~sg~w~~f~  489 (696)
                      +++|+...++...                ........|..+|.+++|+|++. .++++  +.||.+ +||+.+++.....
T Consensus       254 v~i~~~~~~~~~~----------------~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~  317 (420)
T 4gga_A          254 VNVWPSAPGEGGW----------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV  317 (420)
T ss_dssp             EEEEESSCCSSCS----------------CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE
T ss_pred             ceEEeeccccccc----------------eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee
Confidence            9999987665410                11335567899999999999765 55554  479999 9999998643211


Q ss_pred             CccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCc--cceeEEeecCCccEEEEccCCEEEEEEcCceE
Q 005459          490 DITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQ--SSLLCRKSLLAKPIVMDVYEDYILVTYRPFDV  565 (696)
Q Consensus       490 ~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~--~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~  565 (696)
                          .....+..+.|.  ++.+++++.   ..+..|++|+......  ....|...+.+  +.+++++.+|++++.|+.|
T Consensus       318 ----~~~~~v~~~~~~~~~~~lv~~sg---~~d~~I~iwd~~~~~~v~~l~gH~~~V~~--l~~spdg~~l~S~s~D~tv  388 (420)
T 4gga_A          318 ----DAHSQVCSILWSPHYKELISGHG---FAQNQLVIWKYPTMAKVAELKGHTSRVLS--LTMSPDGATVASAAADETL  388 (420)
T ss_dssp             ----ECSSCEEEEEEETTTTEEEEEEC---TTTCCEEEEETTTCCEEEEECCCSSCEEE--EEECTTSSCEEEEETTTEE
T ss_pred             ----ccccceeeeeecCCCCeEEEEEe---cCCCEEEEEECCCCcEEEEEcCCCCCEEE--EEEcCCCCEEEEEecCCeE
Confidence                111235667775  456666522   2457899998752221  11123222322  5677899999999999999


Q ss_pred             EEEEEE
Q 005459          566 HIFHVK  571 (696)
Q Consensus       566 ~l~~~~  571 (696)
                      ++|++.
T Consensus       389 riWdv~  394 (420)
T 4gga_A          389 RLWRCF  394 (420)
T ss_dssp             EEECCS
T ss_pred             EEEECC
Confidence            999863

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.92  E-value=9.7e-24  Score=224.04  Aligned_cols=293  Identities=8%  Similarity=0.034  Sum_probs=185.3

Q ss_pred             hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeE
Q 005459           66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM  145 (696)
Q Consensus        66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~l  145 (696)
                      +.+.+.+++|+|||++||+++.+| +++|+++......                   ...    .....+.++.++++.+
T Consensus        18 h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~-------------------~~~----~~~~~~~~~~~~~~~~   73 (355)
T 3vu4_A           18 VSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM-------------------SQE----MRHLSKVRMLHRTNYV   73 (355)
T ss_dssp             -CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE-------------------EEE----CSCCCEEEECTTSSEE
T ss_pred             CCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee-------------------eee----cCCeEEEEEcCCCCEE
Confidence            357889999999999999998776 7899975322100                   000    0112344555666666


Q ss_pred             -EEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEE
Q 005459          146 -LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF  224 (696)
Q Consensus       146 -lv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  224 (696)
                       ++++.++.|++|+..  ......            .+                       .....|.++.+        
T Consensus        74 ~~~~~~d~~v~iWd~~--~~~~~~------------~~-----------------------~~~~~v~~v~~--------  108 (355)
T 3vu4_A           74 AFVTGVKEVVHIWDDV--KKQDVS------------RI-----------------------KVDAPVKDLFL--------  108 (355)
T ss_dssp             EEECSSTTEEEEEETT--TTEEEE------------EE-----------------------ECSSCEEEEEE--------
T ss_pred             EEEECCccEEEEEECC--CCcEEE------------EE-----------------------ECCCceEEEEE--------
Confidence             456777888885543  221110            00                       01224555553        


Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeec-ceecCCCCeEE-EEEcCCCcEEEE--EecCCeEEEEEccCCCc----------
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKI-DKELGSGDAVC-ASIAPEQQILAV--GTRRGVVELYDLAESAS----------  290 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~v~-v~~sp~~~~la~--g~~dg~v~vw~~~~~~~----------  290 (696)
                        ++++  +++ +.++.+++|+.... +.+........ +++++  +++|+  |+.||+|++||+.+ +.          
T Consensus       109 --~~~~--~~~-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~-~~~~~~~~~~~~  180 (355)
T 3vu4_A          109 --SREF--IVV-SYGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQS-SGSATTQDQGVQ  180 (355)
T ss_dssp             --CSSE--EEE-EETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------
T ss_pred             --cCCE--EEE-EEcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEEEECCC-CCcccccccccc
Confidence              3332  222 23667888988765 33211111333 67888  66666  68999999999986 33          


Q ss_pred             -----e-eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc-EEEEEccCCeeEEEee-cccccceecccccCCC
Q 005459          291 -----L-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG-LTVWSVSGCRLMSTIR-QISLSSISSPIVKPNQ  362 (696)
Q Consensus       291 -----~-~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~-v~vW~~~~~~~~~~l~-~~~~~~v~~~~~sp~~  362 (696)
                           + +..+.+        |.++|++++|+|||++||+|+.|++ |++||+.+++++.++. +.+...|.+++|+|++
T Consensus       181 ~~~~~p~~~~~~~--------h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~  252 (355)
T 3vu4_A          181 QKAILGKGVLIKA--------HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG  252 (355)
T ss_dssp             ------CCEEECC--------CSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTS
T ss_pred             ccccCcccEEEEc--------cCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC
Confidence                 1 566666        9999999999999999999999999 9999999999999998 5247889999999998


Q ss_pred             CCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCccee
Q 005459          363 DCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI  439 (696)
Q Consensus       363 ~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w  439 (696)
                          ..+++++   ++++|+.......      ..  ..+..  .+.....+   ..|.+.                   
T Consensus       253 ----~~l~s~s~d~~v~iw~~~~~~~~------~~--~~~~~--~~~~~~~~---~~~~~~-------------------  296 (355)
T 3vu4_A          253 ----SKLAVVSDKWTLHVFEIFNDQDN------KR--HALKG--WINMKYFQ---SEWSLC-------------------  296 (355)
T ss_dssp             ----CEEEEEETTCEEEEEESSCCSCC------CS--EETTT--TEECCCCC---CSSCSE-------------------
T ss_pred             ----CEEEEEECCCEEEEEEccCCCCc------cc--ccccc--eeeccccc---ccccee-------------------
Confidence                7787776   7788887653210      00  00000  00000000   011110                   


Q ss_pred             EEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC
Q 005459          440 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK  483 (696)
Q Consensus       440 ~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg  483 (696)
                       ...++.   .+..+...++|++||++|++++.||.+ +|++..+
T Consensus       297 -~~~~~~---~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          297 -NFKLSV---DKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             -EEECCC---CTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             -EEEecc---CCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence             001111   122345679999999999999999999 9987653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.92  E-value=2.5e-23  Score=218.34  Aligned_cols=277  Identities=14%  Similarity=0.119  Sum_probs=195.0

Q ss_pred             CCceEEEEEeCCcEEEEE-ccCeEEEeecCCce--eeEEEeecChHHHhhcccccEEEEcCCCc-EEEEEecCcEEEEEE
Q 005459           20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHK--VRLGKYKRDSESVQREGENLQAVWSPDTK-LIAVVTSSLYLHIFK   95 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~--~~l~~~~r~~~sl~~~G~~~~v~wsPDg~-~lav~t~dg~l~l~~   95 (696)
                      +...-++|+|+|++|+++ .+++|+||+.....  ..+....      .+.+.+.+++|+||++ +|++++.||.|++|+
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL------RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE------ECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee------ecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence            345568999999988887 57899999985322  1122211      2346788999999999 999999999999999


Q ss_pred             E-EecCcccccCCCCCCCceeeeeeEEEeeeccccc--cceeEEEe--eeCCCeEEEEecCCcEEEEecCCccccceeec
Q 005459           96 V-QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAE--KGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELV  170 (696)
Q Consensus        96 l-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~v~~~--~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~  170 (696)
                      + ..+....                        +..  +...|.++  .+ ++.+++++.||.|++|+............
T Consensus        86 ~~~~~~~~~------------------------~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  140 (342)
T 1yfq_A           86 LIGSPSFQA------------------------LTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             SSSSSSEEE------------------------CBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred             eccCCceEe------------------------ccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccccc
Confidence            8 6443210                        112  33344444  44 78899999999998865432100000000


Q ss_pred             cCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeee-
Q 005459          171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK-  249 (696)
Q Consensus       171 ~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~-  249 (696)
                                       .           .......+...+.++.          +++++  +++++.++.+++|+... 
T Consensus       141 -----------------~-----------~~~~~~~~~~~v~~~~----------~~~~~--l~~~~~d~~i~i~d~~~~  180 (342)
T 1yfq_A          141 -----------------N-----------LNSNNTKVKNKIFTMD----------TNSSR--LIVGMNNSQVQWFRLPLC  180 (342)
T ss_dssp             -----------------E-----------SCSSSSSSCCCEEEEE----------ECSSE--EEEEESTTEEEEEESSCC
T ss_pred             -----------------C-----------CeeeEEeeCCceEEEE----------ecCCc--EEEEeCCCeEEEEECCcc
Confidence                             0           0000112345577766          44555  77778888899999876 


Q ss_pred             cce-----ecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCC-----CceeeEEeeccC-CCCCCCCCCeEEEEEC
Q 005459          250 IDK-----ELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAES-----ASLIRTVSLYDW-GYSMDDTGPVSCIAWT  316 (696)
Q Consensus       250 ~~~-----~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~-----~~~~~~~~~~~~-~~~~~h~g~V~~l~~s  316 (696)
                      ...     ...|...+. ++|+| ++++|++|+.||.|++|+++..     ......+..... ....+|.++|.+++|+
T Consensus       181 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  260 (342)
T 1yfq_A          181 EDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS  260 (342)
T ss_dssp             TTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC
T ss_pred             ccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEc
Confidence            432     145666666 99999 9999999999999999999874     266777776211 0011235599999999


Q ss_pred             CCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459          317 PDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT  373 (696)
Q Consensus       317 pdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~  373 (696)
                      |||++|++|+.||.|++||+.+++++.++.+|+...|.+++  |++    ..+++|+
T Consensus       261 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~----~~l~s~s  311 (342)
T 1yfq_A          261 PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD----NILCLAT  311 (342)
T ss_dssp             TTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS----SEEEEEE
T ss_pred             CCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC----CeEEEEe
Confidence            99999999999999999999999999999987677888888  887    7787766

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.92  E-value=1.2e-23  Score=226.98  Aligned_cols=239  Identities=11%  Similarity=0.127  Sum_probs=188.1

Q ss_pred             CCCcccEEEEEEccCcceEEEEEe-CCcEEEEeeccCCceeeeeeecc----------eecCCCCeEE-EEEcCCC-cEE
Q 005459          205 FPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKID----------KELGSGDAVC-ASIAPEQ-QIL  271 (696)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~s~-dG~~~~~~~~d~~~~~~~~~~~~----------~~~~~~~~v~-v~~sp~~-~~l  271 (696)
                      ..+...|.+++          ++| +++++++++.|+++++|+.....          .+.+|...+. ++|+|++ ++|
T Consensus        78 ~~h~~~V~~~~----------~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l  147 (402)
T 2aq5_A           78 CGHTAPVLDIA----------WCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVL  147 (402)
T ss_dssp             CCCSSCEEEEE----------ECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEE
T ss_pred             ecCCCCEEEEE----------eCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEE
Confidence            35667788876          667 88999999999999999987652          2367888887 9999998 699


Q ss_pred             EEEecCCeEEEEEccCCCceeeEE--eeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEe-ecc
Q 005459          272 AVGTRRGVVELYDLAESASLIRTV--SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI-RQI  348 (696)
Q Consensus       272 a~g~~dg~v~vw~~~~~~~~~~~~--~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l-~~~  348 (696)
                      ++|+.||+|++||+.+ ++.+..+  ..        |.+.|.+++|+|||+.|++|+.||.|++||+.+++.+.++ ..|
T Consensus       148 ~s~~~dg~i~iwd~~~-~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  218 (402)
T 2aq5_A          148 LSAGCDNVILVWDVGT-GAAVLTLGPDV--------HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPH  218 (402)
T ss_dssp             EEEETTSCEEEEETTT-TEEEEEECTTT--------CCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred             EEEcCCCEEEEEECCC-CCccEEEecCC--------CCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCC
Confidence            9999999999999998 7777777  55        9999999999999999999999999999999999999998 566


Q ss_pred             cccceecccccCCCCCCccceecc---e---eeEEEcCCCceE-E-EEecCCcceE--EEEec-ceee-eeccCCCCcee
Q 005459          349 SLSSISSPIVKPNQDCKYEPLMSG---T---SMMQWDEYGYRL-Y-AIEEGSSERV--LIFSF-GKCC-LNRGVSGMTYA  416 (696)
Q Consensus       349 ~~~~v~~~~~sp~~~~~~~~l~sg---~---~~~~W~~~~~~l-~-~~~~~~~~~v--~~~~~-~~~~-~s~~~d~~~~~  416 (696)
                      ....+.++.|+|++    ..+++|   .   .+.+|+..+.+. + .....+...+  ..+++ ++.+ ++++.|+.+++
T Consensus       219 ~~~~~~~~~~~~~~----~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i  294 (402)
T 2aq5_A          219 EGTRPVHAVFVSEG----KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRY  294 (402)
T ss_dssp             CSSSCCEEEECSTT----EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEE
T ss_pred             CCCcceEEEEcCCC----cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEE
Confidence            44448899999998    888877   2   899999987543 2 2222444555  55566 6666 46778999999


Q ss_pred             eeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCce
Q 005459          417 RQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW  485 (696)
Q Consensus       417 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w  485 (696)
                      |++..++..+.                ....+ .|..+|++++|+|||+++++  .++.+ +|++.+++.
T Consensus       295 ~d~~~~~~~~~----------------~l~~~-~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          295 FEITSEAPFLH----------------YLSMF-SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             EEECSSTTCEE----------------EEEEE-CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred             EEecCCCcceE----------------eeccc-ccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence            99987664110                01122 25689999999999999874  56688 999988753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.1e-23  Score=228.85  Aligned_cols=257  Identities=11%  Similarity=0.008  Sum_probs=184.5

Q ss_pred             eEE-EEEcCCCcEE-EEEecCCeEEEEEcc--CCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459          259 AVC-ASIAPEQQIL-AVGTRRGVVELYDLA--ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW  334 (696)
Q Consensus       259 ~v~-v~~sp~~~~l-a~g~~dg~v~vw~~~--~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW  334 (696)
                      .+. ++|+|++++| |+|+.||+|++|++.  + ++.++.+....      |...|.+++|+|||+.|++|+.||.+++|
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~------~~~~v~~~~~sp~~~~l~~~~~~g~v~~~  176 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTS-KNVLKLRKRFC------FSKRPNAISIAEDDTTVIIADKFGDVYSI  176 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS-SSCEEEEEEEE------CSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC-Cceeeeeeccc------CCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence            566 9999999996 999999999999998  6 67777776311      78899999999999999999999999999


Q ss_pred             EccCCeeEE----EeecccccceecccccCC---CCCCccceecce---eeEEEcCCCceEEEE-ecCCcceEEEEec--
Q 005459          335 SVSGCRLMS----TIRQISLSSISSPIVKPN---QDCKYEPLMSGT---SMMQWDEYGYRLYAI-EEGSSERVLIFSF--  401 (696)
Q Consensus       335 ~~~~~~~~~----~l~~~~~~~v~~~~~sp~---~~~~~~~l~sg~---~~~~W~~~~~~l~~~-~~~~~~~v~~~~~--  401 (696)
                      ++.++....    .+.+| ...|.+++|+|+   +    ..+++|+   ++++|+..+++++.. ..+|...|..+.|  
T Consensus       177 ~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~----~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd  251 (450)
T 2vdu_B          177 DINSIPEEKFTQEPILGH-VSMLTDVHLIKDSDGH----QFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGK  251 (450)
T ss_dssp             ETTSCCCSSCCCCCSEEC-SSCEEEEEEEECTTSC----EEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECS
T ss_pred             ecCCcccccccceeeecc-cCceEEEEEcCCCCCC----cEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECC
Confidence            998776543    67777 678999999999   7    8888887   899999998887766 5688888876666  


Q ss_pred             ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcce--eEEee---cCeeeecCCCceEEEEEcCCCCEEEEEe-CCcc
Q 005459          402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK--ILHLN---LPVSYISQNWPVQHVAASKDGMFLAVAG-LHGL  475 (696)
Q Consensus       402 ~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~--w~~~~---~~~~~~~~~~~I~~va~s~dG~~la~ag-~dG~  475 (696)
                      ++.+++++.|+++++|++..+.....+..........  ++...   .+..-......|..++|+|||++|++++ .++.
T Consensus       252 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~  331 (450)
T 2vdu_B          252 DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC  331 (450)
T ss_dssp             TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence            7889999999999999987765422221110000000  00000   0000012345799999999999999999 8999


Q ss_pred             E-EEEc--cCC-ceEecCCccceeeeEEEeEeeeCcEEEEEEeecCC---CeEEEEEeeCC
Q 005459          476 I-LYDI--RQK-KWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSS---NTYELLFYPRY  529 (696)
Q Consensus       476 i-~w~~--~sg-~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~---~~~~lr~y~~~  529 (696)
                      + +|++  .++ +++........  ..+.+++|.++.+++++.....   .+..|++|..+
T Consensus       332 i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          332 IIILEMSEKQKGDLALKQIITFP--YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EEEEEECSSSTTCEEEEEEEECS--SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             EEEEEeccCCCCceeeccEeccC--CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence            9 9999  443 33332211111  2377899998776666333211   24557888664

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.91  E-value=5.3e-23  Score=217.54  Aligned_cols=273  Identities=11%  Similarity=0.098  Sum_probs=192.0

Q ss_pred             CCCcccEEEEEEccCcceEEEEEeC---CcEEEEeeccCCceeeeeee-cce----ecCCCCeEE-EEEcCCCcEEEEEe
Q 005459          205 FPISSAIIWLELCLPMRLLFVLYSN---GQLMSCSVSKKGLKLAEFIK-IDK----ELGSGDAVC-ASIAPEQQILAVGT  275 (696)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~s~d---G~~~~~~~~d~~~~~~~~~~-~~~----~~~~~~~v~-v~~sp~~~~la~g~  275 (696)
                      ..+...|.+++          ++|+   |+.+++++.|+++++|+... .+.    +.+|...+. ++|+|++++||+|+
T Consensus        36 ~~h~~~v~~~~----------~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~  105 (368)
T 3mmy_A           36 SSPDDSIGCLS----------FSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS  105 (368)
T ss_dssp             SCCSSCEEEEE----------ECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred             cCCCCceEEEE----------EcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence            45677788876          5666   69999999999999999875 322    256888887 99999999999999


Q ss_pred             cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEE--CCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccce
Q 005459          276 RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW--TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI  353 (696)
Q Consensus       276 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~--spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v  353 (696)
                      .||+|++||+++ .+.+. +..        |.++|.+++|  +|++++|++|+.||.|++||+.+++.+.++..+.  .+
T Consensus       106 ~dg~v~iwd~~~-~~~~~-~~~--------~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~  173 (368)
T 3mmy_A          106 CDKTAKMWDLSS-NQAIQ-IAQ--------HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE--RC  173 (368)
T ss_dssp             TTSEEEEEETTT-TEEEE-EEE--------CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS--CE
T ss_pred             CCCcEEEEEcCC-CCcee-ecc--------ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC--Cc
Confidence            999999999987 55444 555        9999999999  9999999999999999999999998888888762  35


Q ss_pred             ecccccCCCCCCccceecce-eeEEEcCCCceEEEEec----CCcceEEEEec-c----eeeeeccCCCCceeeeeeecC
Q 005459          354 SSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE----GSSERVLIFSF-G----KCCLNRGVSGMTYARQVIYGE  423 (696)
Q Consensus       354 ~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~----~~~~~v~~~~~-~----~~~~s~~~d~~~~~w~~~~~~  423 (696)
                      .++.+.++.    ..+.++. .+.+|+...........    .+......+.+ .    ..+++++.|+.+++|++....
T Consensus       174 ~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~  249 (368)
T 3mmy_A          174 YCADVIYPM----AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN  249 (368)
T ss_dssp             EEEEEETTE----EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred             eEEEecCCe----eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence            555554432    2222222 88999987654333221    23334444443 2    238999999999999987653


Q ss_pred             C--eEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEE
Q 005459          424 D--RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSK  500 (696)
Q Consensus       424 ~--~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~  500 (696)
                      .  .+....++..       ........+|..+|.+++|+|||++||+|+.||.+ +||+.+++.....   ......+.
T Consensus       250 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~  319 (368)
T 3mmy_A          250 PAKDNFTFKCHRS-------NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS---EQLDQPIS  319 (368)
T ss_dssp             HHHHSEEEECSEE-------C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC---CCCSSCEE
T ss_pred             ccccceeeeeeec-------ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe---cCCCCCce
Confidence            2  1000010000       00011122333489999999999999999999999 9999987643211   11223478


Q ss_pred             eEeee--CcEEEEEE
Q 005459          501 GLLWL--GKIIVVCN  513 (696)
Q Consensus       501 ~~~w~--~~~lv~~~  513 (696)
                      .++|.  +..|++++
T Consensus       320 ~~~~s~~g~~l~~~s  334 (368)
T 3mmy_A          320 ACCFNHNGNIFAYAS  334 (368)
T ss_dssp             EEEECTTSSCEEEEE
T ss_pred             EEEECCCCCeEEEEe
Confidence            89996  45677763

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.91  E-value=6.4e-22  Score=217.00  Aligned_cols=273  Identities=13%  Similarity=0.053  Sum_probs=191.8

Q ss_pred             CceEEEEEeCCcEEEEEccCeEEEeecCCcee---eEEEeecChH---------------HH------------------
Q 005459           21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKV---RLGKYKRDSE---------------SV------------------   64 (696)
Q Consensus        21 ~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~---~l~~~~r~~~---------------sl------------------   64 (696)
                      +...+.|||||++|+++.++.|.+|++. .+.   .+..+.....               .+                  
T Consensus         6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (450)
T 2vdu_B            6 PLQNLLTSRDGSLVFAIIKNCILSFKYQ-SPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI   84 (450)
T ss_dssp             CCCEEEECSSSSEEEEEETTEEEEEEEE-TTTEEEEEEEEECCC------------------------------------
T ss_pred             cEEEEEecCCCCEEEEEeCCeEEEEECC-CCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence            3556889999999888888999999985 444   3433331100               00                  


Q ss_pred             ---------------hhcccccEEEEcCCCcEE-EEEecCcEEEEEEEE--ecCcccccCCCCCCCceeeeeeEEEeeec
Q 005459           65 ---------------QREGENLQAVWSPDTKLI-AVVTSSLYLHIFKVQ--ITEKSIQIGGKQPSGLFFIKISLVLNEQL  126 (696)
Q Consensus        65 ---------------~~~G~~~~v~wsPDg~~l-av~t~dg~l~l~~l~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  126 (696)
                                     ...+.+.+++|+|||++| |+++.||.|++|++.  .+......                 ..  
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-----------------~~--  145 (450)
T 2vdu_B           85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-----------------KR--  145 (450)
T ss_dssp             ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-----------------EE--
T ss_pred             cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee-----------------ec--
Confidence                           012358899999999996 888899999999997  33211100                 00  


Q ss_pred             cccccceeEE--EeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCc
Q 005459          127 PFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHK  204 (696)
Q Consensus       127 ~~~~~~~~v~--~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~  204 (696)
                        ......|+  ++.++++.|++++.+|.++.++..........                                ...+
T Consensus       146 --~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~--------------------------------~~~~  191 (450)
T 2vdu_B          146 --FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT--------------------------------QEPI  191 (450)
T ss_dssp             --EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCC--------------------------------CCCS
T ss_pred             --ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccccc--------------------------------ceee
Confidence              01112333  45678889999999999988653321111000                                0011


Q ss_pred             CCCcccEEEEEEccCcceEEEEEeC---CcEEEEeeccCCceeeeeeeccee----cCCCCeEE-EEEcCCCcEEEEEec
Q 005459          205 FPISSAIIWLELCLPMRLLFVLYSN---GQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAPEQQILAVGTR  276 (696)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~s~d---G~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~-v~~sp~~~~la~g~~  276 (696)
                      ..+...|.++.          ++||   |+.+++++.|+++++|+...++..    .+|...+. ++|+ ++++|++|+.
T Consensus       192 ~~h~~~v~~~~----------~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~  260 (450)
T 2vdu_B          192 LGHVSMLTDVH----------LIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGG  260 (450)
T ss_dssp             EECSSCEEEEE----------EEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEES
T ss_pred             ecccCceEEEE----------EcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeC
Confidence            23445566654          7889   999999999999999998766432    47888877 9999 9999999999


Q ss_pred             CCeEEEEEccCCCceeeEEeeccC--C---------------CCCCCCCCeEEEEECCCCCeEEEEE-cCCcEEEEEc--
Q 005459          277 RGVVELYDLAESASLIRTVSLYDW--G---------------YSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSV--  336 (696)
Q Consensus       277 dg~v~vw~~~~~~~~~~~~~~~~~--~---------------~~~~h~g~V~~l~~spdg~~lasg~-~Dg~v~vW~~--  336 (696)
                      ||+|++||+.+ ++.+..+.....  +               ....+...|.+++|+|||++|++++ .|+.|++|++  
T Consensus       261 d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~  339 (450)
T 2vdu_B          261 DDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSE  339 (450)
T ss_dssp             SSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECS
T ss_pred             CCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEecc
Confidence            99999999998 777777764210  0               0002346799999999999999999 8999999999  


Q ss_pred             cCC---eeEEEeecccccceecccccCC
Q 005459          337 SGC---RLMSTIRQISLSSISSPIVKPN  361 (696)
Q Consensus       337 ~~~---~~~~~l~~~~~~~v~~~~~sp~  361 (696)
                      ..+   ..+.++..+  ..+.+++|+|+
T Consensus       340 ~~~~~l~~~~~~~~~--~~v~~~~~~~~  365 (450)
T 2vdu_B          340 KQKGDLALKQIITFP--YNVISLSAHND  365 (450)
T ss_dssp             SSTTCEEEEEEEECS--SCEEEEEEETT
T ss_pred             CCCCceeeccEeccC--CceEEEEecCC
Confidence            555   667777776  56888888885

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.5e-23  Score=241.91  Aligned_cols=251  Identities=16%  Similarity=0.117  Sum_probs=197.2

Q ss_pred             CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeee--ecce---ecCCCCeEE-EEEcCC--CcEEEEEec
Q 005459          205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI--KIDK---ELGSGDAVC-ASIAPE--QQILAVGTR  276 (696)
Q Consensus       205 ~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~--~~~~---~~~~~~~v~-v~~sp~--~~~la~g~~  276 (696)
                      .+|...|.++.          ++|||+.+++++.|+++++|+..  ..+.   +.+|.+.|. ++|+|+  +++|++|+.
T Consensus         6 ~gH~~~V~~l~----------~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~   75 (753)
T 3jro_A            6 NAHNELIHDAV----------LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY   75 (753)
T ss_dssp             --CCCCEEEEC----------CCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET
T ss_pred             ccCcceeEEEE----------ECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC
Confidence            35666787765          67889999999999999999986  3222   368988887 999998  999999999


Q ss_pred             CCeEEEEEccCCCc--eeeEEeeccCCCCCCCCCCeEEEEECCC--CCeEEEEEcCCcEEEEEccCCe--eEEEeecccc
Q 005459          277 RGVVELYDLAESAS--LIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISL  350 (696)
Q Consensus       277 dg~v~vw~~~~~~~--~~~~~~~~~~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg~v~vW~~~~~~--~~~~l~~~~~  350 (696)
                      ||+|++||+.+ +.  ....+..        |.++|.+++|+|+  |+.|++|+.||.|++||+.++.  ....+.+| .
T Consensus        76 Dg~I~vwd~~~-~~~~~~~~~~~--------h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~-~  145 (753)
T 3jro_A           76 DGKVLIWKEEN-GRWSQIAVHAV--------HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH-A  145 (753)
T ss_dssp             TSCEEEEEEET-TEEEEEEEECC--------CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC-S
T ss_pred             CCeEEEEECCC-CcccccccccC--------CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC-C
Confidence            99999999987 54  4555666        9999999999999  9999999999999999998763  34455566 6


Q ss_pred             cceecccccCCCC---------CCccceecce---eeEEEcCCCc----eEEEEecCCcceEEEEec------ceeeeec
Q 005459          351 SSISSPIVKPNQD---------CKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSSERVLIFSF------GKCCLNR  408 (696)
Q Consensus       351 ~~v~~~~~sp~~~---------~~~~~l~sg~---~~~~W~~~~~----~l~~~~~~~~~~v~~~~~------~~~~~s~  408 (696)
                      ..|.+++|+|...         .+...+++|+   ++++|+..++    .+.....+|...|..+.+      ++.++++
T Consensus       146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~  225 (753)
T 3jro_A          146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV  225 (753)
T ss_dssp             SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence            7899999999410         0127778776   8999998765    667777889999955544      3679999


Q ss_pred             cCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC-CceE
Q 005459          409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ-KKWR  486 (696)
Q Consensus       409 ~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s-g~w~  486 (696)
                      +.|+++++|++..+....               .........|..+|.+++|+|||+++++|+.||.+ +|++.+ ++|.
T Consensus       226 s~Dg~I~iwd~~~~~~~~---------------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~~  290 (753)
T 3jro_A          226 SQDRTCIIWTQDNEQGPW---------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE  290 (753)
T ss_dssp             ESSSCEEEEEESSSSSCC---------------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCCB
T ss_pred             ecCCEEEEecCCCCCCcc---------------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCcc
Confidence            999999999988764310               00122334688899999999999999999999999 999984 5566


Q ss_pred             ecCC
Q 005459          487 VFGD  490 (696)
Q Consensus       487 ~f~~  490 (696)
                      ....
T Consensus       291 ~~~~  294 (753)
T 3jro_A          291 PAGE  294 (753)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            5543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.90  E-value=1.4e-22  Score=214.37  Aligned_cols=274  Identities=14%  Similarity=0.138  Sum_probs=198.4

Q ss_pred             cCCCCeEE-EEEcCC---CcEEEEEecCCeEEEEEccCCCcee-eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459          254 LGSGDAVC-ASIAPE---QQILAVGTRRGVVELYDLAESASLI-RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS  328 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~---~~~la~g~~dg~v~vw~~~~~~~~~-~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D  328 (696)
                      .+|.+.|. ++|+|+   +++||+|+.||+|++||+++.+..+ ..+.+        |.++|.+++|+|||++|++|+.|
T Consensus        36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~~~l~s~~~d  107 (368)
T 3mmy_A           36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM--------HTGPVLDVCWSDDGSKVFTASCD  107 (368)
T ss_dssp             SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE--------CSSCEEEEEECTTSSEEEEEETT
T ss_pred             cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecc--------ccCCEEEEEECcCCCEEEEEcCC
Confidence            67888887 999999   6999999999999999998733333 67777        99999999999999999999999


Q ss_pred             CcEEEEEccCCeeEEEeecccccceecccc--cCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-c
Q 005459          329 RGLTVWSVSGCRLMSTIRQISLSSISSPIV--KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-G  402 (696)
Q Consensus       329 g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~--sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~  402 (696)
                      |.|++||+.+++.... .+| ...|.+++|  +|++    ..+++++   .+++|+..+++.+.....+. .+..+.+ .
T Consensus       108 g~v~iwd~~~~~~~~~-~~~-~~~v~~~~~~~~~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~  180 (368)
T 3mmy_A          108 KTAKMWDLSSNQAIQI-AQH-DAPVKTIHWIKAPNY----SCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY  180 (368)
T ss_dssp             SEEEEEETTTTEEEEE-EEC-SSCEEEEEEEECSSC----EEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET
T ss_pred             CcEEEEEcCCCCceee-ccc-cCceEEEEEEeCCCC----CEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC
Confidence            9999999999987764 445 678999999  7887    7788776   89999999988887776654 5555555 6


Q ss_pred             eeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCE----EEEEeCCccE-E
Q 005459          403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMF----LAVAGLHGLI-L  477 (696)
Q Consensus       403 ~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~----la~ag~dG~i-~  477 (696)
                      ..++.++.++.+++|++.......                  ......+...+.++++.+++..    +++++.||.+ +
T Consensus       181 ~~~~~~~~~~~i~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i  242 (368)
T 3mmy_A          181 PMAVVATAERGLIVYQLENQPSEF------------------RRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI  242 (368)
T ss_dssp             TEEEEEEGGGCEEEEECSSSCEEE------------------EECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred             CeeEEEeCCCcEEEEEeccccchh------------------hhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence            677888889999999986554321                  0111123445777777777665    9999999999 9


Q ss_pred             EEccCCce----EecCCccc--------eeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeec-
Q 005459          478 YDIRQKKW----RVFGDITQ--------EQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSL-  542 (696)
Q Consensus       478 w~~~sg~w----~~f~~~~~--------e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~-  542 (696)
                      |++..+.-    ..+.....        .+...+..++|.+  ++++++     +.+..|++|+....   ..+..... 
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~-----~~dg~i~iwd~~~~---~~~~~~~~~  314 (368)
T 3mmy_A          243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATV-----GSDGRFSFWDKDAR---TKLKTSEQL  314 (368)
T ss_dssp             EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEE-----ETTSCEEEEETTTT---EEEEECCCC
T ss_pred             EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEE-----ccCCeEEEEECCCC---cEEEEecCC
Confidence            99987631    11111100        0011477899974  467766     23467999987621   12222111 


Q ss_pred             CCc--cEEEEccCCEEEEEEcCceEEEE
Q 005459          543 LAK--PIVMDVYEDYILVTYRPFDVHIF  568 (696)
Q Consensus       543 ~~~--~l~~~~~~~~llv~~~d~~~~l~  568 (696)
                      ..+  -+.+++++.+|++++.|+-.+.|
T Consensus       315 ~~~v~~~~~s~~g~~l~~~s~d~~~~~~  342 (368)
T 3mmy_A          315 DQPISACCFNHNGNIFAYASSYDWSKGH  342 (368)
T ss_dssp             SSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred             CCCceEEEECCCCCeEEEEecccccccc
Confidence            122  26777889999998877643333

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.90  E-value=7.6e-22  Score=209.42  Aligned_cols=291  Identities=13%  Similarity=0.111  Sum_probs=196.0

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeE-EEEEcCCcE
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKSRGL  331 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~l-asg~~Dg~v  331 (696)
                      ..|.+.+. ++||||+++||+|+.|| +++|+++. .+......          .+.+..++|+++++.+ ++|+.|++|
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~-~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~d~~v   83 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHP-VAHIMSQE----------MRHLSKVRMLHRTNYVAFVTGVKEVV   83 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETT-EEEEEEEE----------CSCCCEEEECTTSSEEEEECSSTTEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCC-cceeeeee----------cCCeEEEEEcCCCCEEEEEECCccEE
Confidence            45777776 99999999999998775 78999876 44433322          2358889999999888 467888999


Q ss_pred             EEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCc-eEEEEecCCcceEEEEecceeeee-cc
Q 005459          332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGY-RLYAIEEGSSERVLIFSFGKCCLN-RG  409 (696)
Q Consensus       332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~-~l~~~~~~~~~~v~~~~~~~~~~s-~~  409 (696)
                      ++||+.+++++.++..  ...|.++.++++.    ..++....+.+|+..+. +++..... ...+.++++...+++ ++
T Consensus        84 ~iWd~~~~~~~~~~~~--~~~v~~v~~~~~~----~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~~~la~~sg~  156 (355)
T 3vu4_A           84 HIWDDVKKQDVSRIKV--DAPVKDLFLSREF----IVVSYGDVISVFKFGNPWKRITDDIR-FGGVCEFSNGLLVYSNEF  156 (355)
T ss_dssp             EEEETTTTEEEEEEEC--SSCEEEEEECSSE----EEEEETTEEEEEESSTTCCBSSCCEE-EEEEEEEETTEEEEEESS
T ss_pred             EEEECCCCcEEEEEEC--CCceEEEEEcCCE----EEEEEcCEEEEEECCCCceeeEEecc-CCceEEEEccEEEEeCCC
Confidence            9999999999998874  3579999998875    44444448999999887 55444433 445677777433444 78


Q ss_pred             CCCCceeeeeeecCCeEEEEecCCCCcceeEEeec-CeeeecCCCceEEEEEcCCCCEEEEEeCCcc-E-EEEccCCceE
Q 005459          410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL-PVSYISQNWPVQHVAASKDGMFLAVAGLHGL-I-LYDIRQKKWR  486 (696)
Q Consensus       410 ~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~I~~va~s~dG~~la~ag~dG~-i-~w~~~sg~w~  486 (696)
                      .|+.+++|++..+.....    .+.. ..-..++. ...+.+|..+|.+++|+|||++||+|+.||+ + +||+.+++..
T Consensus       157 ~~g~v~iwd~~~~~~~~~----~~~~-~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~  231 (355)
T 3vu4_A          157 NLGQIHITKLQSSGSATT----QDQG-VQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV  231 (355)
T ss_dssp             CTTCEEEEECCC-----------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred             cCcEEEEEECCCCCcccc----cccc-ccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence            999999999876541000    0000 00000001 3567799999999999999999999999998 9 9999988643


Q ss_pred             e-cCCccceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCC-C-CCccce---------------eEEeecC---
Q 005459          487 V-FGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY-H-LDQSSL---------------LCRKSLL---  543 (696)
Q Consensus       487 ~-f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~-~-l~~~~~---------------~~~~~~~---  543 (696)
                      . |....  +.-.|..++|.+  ..++++     +.+..|++|+.. . ......               .....++   
T Consensus       232 ~~~~~g~--h~~~v~~~~~s~~~~~l~s~-----s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (355)
T 3vu4_A          232 REFRRGL--DRADVVDMKWSTDGSKLAVV-----SDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDK  304 (355)
T ss_dssp             EEEECTT--CCSCEEEEEECTTSCEEEEE-----ETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCT
T ss_pred             EEEEcCC--CCCcEEEEEECCCCCEEEEE-----ECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCC
Confidence            2 21100  223477899974  466665     344789999875 1 111100               0011111   


Q ss_pred             ---CccEEEEccCCEEEEEEcCceEEEEEEEEecc
Q 005459          544 ---AKPIVMDVYEDYILVTYRPFDVHIFHVKLFGE  575 (696)
Q Consensus       544 ---~~~l~~~~~~~~llv~~~d~~~~l~~~~~~~~  575 (696)
                         ...++.+++++++++++.|+.+.+|.+.-.++
T Consensus       305 ~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~  339 (355)
T 3vu4_A          305 HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE  339 (355)
T ss_dssp             TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred             CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence               13467778888999999999999999876543

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.5e-22  Score=211.88  Aligned_cols=230  Identities=8%  Similarity=0.031  Sum_probs=173.5

Q ss_pred             EEeCCcEEEEeeccCCceeeeeeecceecC-CCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC--------CceeeEE
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKIDKELG-SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES--------ASLIRTV  295 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~--------~~~~~~~  295 (696)
                      ++.|++.+++++.|+++++||...++.... ....+. +.++|+   +++|+.|++|++|+.+..        .+.++.+
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~  120 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREI  120 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence            357899999999999999999877644310 123344 778888   999999999999987631        2223333


Q ss_pred             eeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459          296 SLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT  373 (696)
Q Consensus       296 ~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~  373 (696)
                      ..       +|.++|.+++|+|  +|++|++|+.||+|++||+.++++......++...+.+++|+|++    ..+++|+
T Consensus       121 ~~-------~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg----~~lasg~  189 (343)
T 3lrv_A          121 EV-------DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS----LLLALYS  189 (343)
T ss_dssp             EC-------CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS----CEEEEEC
T ss_pred             ec-------CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC----CEEEEEc
Confidence            32       3788999999999  999999999999999999999988777766556679999999998    8898876


Q ss_pred             ---eeEEEcCCCceEE-EEecC-CcceEEEE--ec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecC
Q 005459          374 ---SMMQWDEYGYRLY-AIEEG-SSERVLIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP  445 (696)
Q Consensus       374 ---~~~~W~~~~~~l~-~~~~~-~~~~v~~~--~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~  445 (696)
                         .+++|+.++++.. ..+.. |...|..+  ++ ++.+++++ ++++++||+..+...                 ...
T Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~-----------------~~~  251 (343)
T 3lrv_A          190 PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT-----------------LAY  251 (343)
T ss_dssp             TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC-----------------BSS
T ss_pred             CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc-----------------eee
Confidence               8999999988876 66777 88999554  44 78888888 559999998776541                 001


Q ss_pred             eeeecCCCceE--EEEEcCCCCEEEEEeC-CccE-EEEccCC--ceEe
Q 005459          446 VSYISQNWPVQ--HVAASKDGMFLAVAGL-HGLI-LYDIRQK--KWRV  487 (696)
Q Consensus       446 ~~~~~~~~~I~--~va~s~dG~~la~ag~-dG~i-~w~~~sg--~w~~  487 (696)
                      ..+..|..++.  +++|+|+|++||+++. |+.+ +|++.++  .|+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~  299 (343)
T 3lrv_A          252 PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK  299 (343)
T ss_dssp             CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred             cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe
Confidence            12223444444  6999999999999998 9999 9998544  3554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.9e-22  Score=235.59  Aligned_cols=242  Identities=12%  Similarity=0.094  Sum_probs=189.2

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC-CceeeEEeeccCCCCCCCCCCeEEEEECCC--CCeEEEEEcCC
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSR  329 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg  329 (696)
                      .+|.+.+. ++|+|++++||+|+.||+|+||++... ......+.+        |.++|++++|+|+  |+.|++|+.||
T Consensus         6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~--------h~~~V~~l~~s~~~~~~~l~s~s~Dg   77 (753)
T 3jro_A            6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG--------HEGPVWRVDWAHPKFGTILASCSYDG   77 (753)
T ss_dssp             --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECC--------CSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred             ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccC--------CcCceEEEEecCCCCCCEEEEEeCCC
Confidence            57888887 999999999999999999999999741 455667777        9999999999998  99999999999


Q ss_pred             cEEEEEccCCe--eEEEeecccccceecccccCC--CCCCccceecce---eeEEEcCCCc--eEEEEecCCcceEEE--
Q 005459          330 GLTVWSVSGCR--LMSTIRQISLSSISSPIVKPN--QDCKYEPLMSGT---SMMQWDEYGY--RLYAIEEGSSERVLI--  398 (696)
Q Consensus       330 ~v~vW~~~~~~--~~~~l~~~~~~~v~~~~~sp~--~~~~~~~l~sg~---~~~~W~~~~~--~l~~~~~~~~~~v~~--  398 (696)
                      .|++||+.+++  ....+.+| ...|++++|+|+  +    ..+++|+   .+++|+..+.  .......+|...|..  
T Consensus        78 ~I~vwd~~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~----~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~  152 (753)
T 3jro_A           78 KVLIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYG----PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS  152 (753)
T ss_dssp             CEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGC----SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEE
T ss_pred             eEEEEECCCCcccccccccCC-CCCeEEEEECCCCCC----CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEE
Confidence            99999999887  66777777 778999999998  6    7888887   8999999776  233445677778844  


Q ss_pred             Eec--------------ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCC-
Q 005459          399 FSF--------------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-  463 (696)
Q Consensus       399 ~~~--------------~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~d-  463 (696)
                      +++              ++.+++++.|+++++|++..+....                .+...+.+|..+|.+++|+|+ 
T Consensus       153 ~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~----------------~~~~~~~~h~~~V~~l~~sp~~  216 (753)
T 3jro_A          153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY----------------VLESTLEGHSDWVRDVAWSPTV  216 (753)
T ss_dssp             ECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE----------------EEEEEECCCSSCEEEEEECCCC
T ss_pred             ecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc----------------eeeeeecCCCCcEEEEEeccCC
Confidence            444              4679999999999999998765421                123456789999999999999 


Q ss_pred             --CCEEEEEeCCccE-EEEccCCceE--ecCCccceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCC
Q 005459          464 --GMFLAVAGLHGLI-LYDIRQKKWR--VFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       464 --G~~la~ag~dG~i-~w~~~sg~w~--~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                        |+++++|+.||.+ +||+.+++-.  ............+.+++|.+  ..++++     +.+..|++|+..
T Consensus       217 ~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~-----s~Dg~I~vwd~~  284 (753)
T 3jro_A          217 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS-----GGDNKVTLWKEN  284 (753)
T ss_dssp             SSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE-----CSSSCEECCBCC
T ss_pred             CCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE-----cCCCEEEEEecC
Confidence              9999999999999 9999886311  11111111223366888864  466666     345789999875

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=3.2e-21  Score=233.55  Aligned_cols=303  Identities=12%  Similarity=-0.004  Sum_probs=203.9

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecce--ecC-----------CCCeE-EEEEc-CCCcEEEEEecCCeEEEEEccCC
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK--ELG-----------SGDAV-CASIA-PEQQILAVGTRRGVVELYDLAES  288 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~--~~~-----------~~~~v-~v~~s-p~~~~la~g~~dg~v~vw~~~~~  288 (696)
                      .+++|||+.++.+ .++.+.+|+....+.  +.+           |...+ .++|| |||+.||+++ ++.|.+|++.. 
T Consensus       250 ~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~-  326 (1045)
T 1k32_A          250 RHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG-  326 (1045)
T ss_dssp             EEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS-
T ss_pred             eeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC-
Confidence            3578999977776 477788887622111  111           22234 49999 9999999988 88999999876 


Q ss_pred             CceeeEEeeccCCCCCCCCC-CeEEEEECCCCCeEEEEEcCCcEE-EEEccCCeeEEEeecccccceecccccCCCCCCc
Q 005459          289 ASLIRTVSLYDWGYSMDDTG-PVSCIAWTPDNSAFAVGWKSRGLT-VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKY  366 (696)
Q Consensus       289 ~~~~~~~~~~~~~~~~~h~g-~V~~l~~spdg~~lasg~~Dg~v~-vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~  366 (696)
                      +. ...+..        |.+ .+..++|+ ||+.|+.++.++.+. +|++.++... .+.++ ...+..++|+|++    
T Consensus       327 ~~-~~~~~~--------~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~-~~~~~~~~~SpDG----  390 (1045)
T 1k32_A          327 TY-VLKVPE--------PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN-LGNVFAMGVDRNG----  390 (1045)
T ss_dssp             SB-EEECSC--------CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCC-CCSEEEEEECTTS----
T ss_pred             Cc-eEEccC--------CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCC-ccceeeeEECCCC----
Confidence            43 333444        777 89999999 999999999988888 9999887643 44444 5678999999999    


Q ss_pred             cceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCC----------CceeeeeeecCCeEEEEe
Q 005459          367 EPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSG----------MTYARQVIYGEDRLLVVQ  430 (696)
Q Consensus       367 ~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~----------~~~~w~~~~~~~~~~~~~  430 (696)
                      +.++++.   .+.+|++.++++.....+|...+  ++|++ ++.+++++.++          .+++|++..+.       
T Consensus       391 ~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-------  463 (1045)
T 1k32_A          391 KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-------  463 (1045)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-------
T ss_pred             CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-------
Confidence            7777665   78999999998888776777665  67777 88887776543          77888765432       


Q ss_pred             cCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCce------------------Ee--cC
Q 005459          431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW------------------RV--FG  489 (696)
Q Consensus       431 ~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w------------------~~--f~  489 (696)
                                    +..+..|...+.+++|+|||++|++++.++.. .|+......                  ..  |.
T Consensus       464 --------------~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (1045)
T 1k32_A          464 --------------IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV  529 (1045)
T ss_dssp             --------------EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCC
T ss_pred             --------------EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccC
Confidence                          23445677778899999999999999998877 877543221                  00  10


Q ss_pred             --------------Cc-cce-----eeeEEEeEeeeCcE--EEEE--------EeecCCCeEEEEEeeCCCCCccceeEE
Q 005459          490 --------------DI-TQE-----QKIQSKGLLWLGKI--IVVC--------NYIDSSNTYELLFYPRYHLDQSSLLCR  539 (696)
Q Consensus       490 --------------~~-~~e-----~~~~v~~~~w~~~~--lv~~--------~~~~~~~~~~lr~y~~~~l~~~~~~~~  539 (696)
                                    .. ...     ....+.++...++.  +++.        .+........|.+|+...-... .+. 
T Consensus       530 ~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~-  607 (1045)
T 1k32_A          530 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EVK-  607 (1045)
T ss_dssp             CGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-EEE-
T ss_pred             cCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEE-Eee-
Confidence                          00 000     01123455665543  3320        0011234567888877522111 111 


Q ss_pred             eecCCccEEEEccCCEEEEEEcCceEEEEEEE
Q 005459          540 KSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       540 ~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~  571 (696)
                      ..+.  .+.+++++.+|+++..+ .+++|++.
T Consensus       608 ~~v~--~~~~S~DG~~l~~~~~~-~i~~~d~~  636 (1045)
T 1k32_A          608 NNLT--DLRLSADRKTVMVRKDD-GKIYTFPL  636 (1045)
T ss_dssp             EEEE--EEEECTTSCEEEEEETT-SCEEEEES
T ss_pred             cCcc--eEEECCCCCEEEEEcCC-cEEEEeCc
Confidence            2222  36888999999997755 78888874

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.89  E-value=7.6e-22  Score=215.12  Aligned_cols=245  Identities=11%  Similarity=0.139  Sum_probs=188.2

Q ss_pred             eEEEEEeC-CcEEEEeeccCCceeeeeee----------cce---ecCCCCeEE-EEEcCCCc-EEEEEecCCeEEEEEc
Q 005459          222 LLFVLYSN-GQLMSCSVSKKGLKLAEFIK----------IDK---ELGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDL  285 (696)
Q Consensus       222 ~~~~~s~d-G~~~~~~~~d~~~~~~~~~~----------~~~---~~~~~~~v~-v~~sp~~~-~la~g~~dg~v~vw~~  285 (696)
                      ..+.++|+ ++++++++.++.+++|+...          .+.   +.+|...++ ++|+|+++ +|++|+.||+|++|++
T Consensus       132 ~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~  211 (430)
T 2xyi_A          132 NRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI  211 (430)
T ss_dssp             SEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEET
T ss_pred             EEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeC
Confidence            34567786 67888888999999999865          222   257888877 99999998 9999999999999999


Q ss_pred             cCCCce------eeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCC---eeEEEeecccccceec
Q 005459          286 AESASL------IRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLSSISS  355 (696)
Q Consensus       286 ~~~~~~------~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~---~~~~~l~~~~~~~v~~  355 (696)
                      ......      ...+..        |.+.|.+++|+| ++..|++++.||.|++||+..+   +.+..+..| ...|++
T Consensus       212 ~~~~~~~~~~~~~~~~~~--------h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~v~~  282 (430)
T 2xyi_A          212 NATPKEHRVIDAKNIFTG--------HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH-TAEVNC  282 (430)
T ss_dssp             TSCCBGGGEEECSEEECC--------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC-SSCEEE
T ss_pred             CCCCCCCceeccceeecC--------CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC-CCCeEE
Confidence            862211      334445        999999999999 7889999999999999999876   567777777 678999


Q ss_pred             ccccCCCCCCcc-ceecce---eeEEEcCCC-ceEEEEecCCcceEEEEe--c-ce-eeeeccCCCCceeeeeeecCCeE
Q 005459          356 PIVKPNQDCKYE-PLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLIFS--F-GK-CCLNRGVSGMTYARQVIYGEDRL  426 (696)
Q Consensus       356 ~~~sp~~~~~~~-~l~sg~---~~~~W~~~~-~~l~~~~~~~~~~v~~~~--~-~~-~~~s~~~d~~~~~w~~~~~~~~~  426 (696)
                      ++|+|++    + .+++|.   .+.+|+... .+.+....+|...|..+.  + ++ .+++++.|+.+++|++.......
T Consensus       283 i~~~p~~----~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~  358 (430)
T 2xyi_A          283 LSFNPYS----EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ  358 (430)
T ss_dssp             EEECSSC----TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred             EEeCCCC----CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence            9999987    5 466776   899999987 566777778888885554  4 43 58899999999999987633210


Q ss_pred             EEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCC-EEEEEeCCccE-EEEccCCce
Q 005459          427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKW  485 (696)
Q Consensus       427 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~-~la~ag~dG~i-~w~~~sg~w  485 (696)
                      ......+.      ..++...+.+|..+|++++|+|+|+ ++|+++.||.+ +|++..+.+
T Consensus       359 ~~~~~~~~------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~  413 (430)
T 2xyi_A          359 STEDAEDG------PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY  413 (430)
T ss_dssp             CHHHHHHC------CTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHH
T ss_pred             CccccccC------CcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccc
Confidence            00000000      0012334567889999999999999 99999999999 999987643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.89  E-value=2.2e-20  Score=200.10  Aligned_cols=271  Identities=11%  Similarity=0.072  Sum_probs=189.3

Q ss_pred             cEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEE-EEEecCcEEEEEEEEecCcccccCCCC
Q 005459           32 GLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLI-AVVTSSLYLHIFKVQITEKSIQIGGKQ  109 (696)
Q Consensus        32 ~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~l-av~t~dg~l~l~~l~~~~~~~~~~~~~  109 (696)
                      .+|++. .+++|++|+.. .+..+..+.       .++.+.+++|+|||+.| ++++.++.|++||+..++.....    
T Consensus         3 ~l~vs~~~d~~v~v~d~~-~~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~----   70 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVT-SNKVTATIP-------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV----   70 (391)
T ss_dssp             EEEEEETTTTEEEEEETT-TTEEEEEEE-------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE----
T ss_pred             EEEEEcCCCCEEEEEECC-CCeEEEEee-------cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE----
Confidence            456666 47899999996 544444332       33456899999999987 55668999999998643211100    


Q ss_pred             CCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEe-cCCcEEEEecCCccccceeeccCCCCCcccccccccCCC
Q 005459          110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN  188 (696)
Q Consensus       110 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t-~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~  188 (696)
                                   .    . .....-.++.+++++++++. .++.|++|+.+..  ....            .       
T Consensus        71 -------------~----~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~--~~~~------------~-------  111 (391)
T 1l0q_A           71 -------------P----A-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN--TVAG------------T-------  111 (391)
T ss_dssp             -------------E----C-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEE------------E-------
T ss_pred             -------------E----C-CCCccceEECCCCCEEEEEECCCCEEEEEECCCC--eEEE------------E-------
Confidence                         0    0 11112235667788887665 4589888654322  1110            0       


Q ss_pred             CcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEE-EEeeccCCceeeeeeeccee---cCCCCeEEEEE
Q 005459          189 GLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLM-SCSVSKKGLKLAEFIKIDKE---LGSGDAVCASI  264 (696)
Q Consensus       189 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~-~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~  264 (696)
                                      ......+..          +++++||+.+ +++..++.+++||...++..   ..+.....++|
T Consensus       112 ----------------~~~~~~~~~----------~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~  165 (391)
T 1l0q_A          112 ----------------VKTGKSPLG----------LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAV  165 (391)
T ss_dssp             ----------------EECSSSEEE----------EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEE
T ss_pred             ----------------EeCCCCcce----------EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEE
Confidence                            000112333          4578899866 56667889999998765433   34555555999


Q ss_pred             cCCCcEE-EEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE---cCCcEEEEEccCCe
Q 005459          265 APEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW---KSRGLTVWSVSGCR  340 (696)
Q Consensus       265 sp~~~~l-a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~---~Dg~v~vW~~~~~~  340 (696)
                      +|+++.| ++++.|+.|++||+++ ++....+.         +...+.+++|+|||+.|++++   .|+.|++||+.+++
T Consensus       166 ~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~---------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~  235 (391)
T 1l0q_A          166 TPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK---------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (391)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE---------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             CCCCCEEEEEeCCCCEEEEEECCC-CeEEEEEe---------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence            9999877 6778899999999987 66555554         456799999999999999988   68999999999999


Q ss_pred             eEEEeecccccceecccccCCCCCCccce-ecce---eeEEEcCCCceEEEEecCCcce
Q 005459          341 LMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT---SMMQWDEYGYRLYAIEEGSSER  395 (696)
Q Consensus       341 ~~~~l~~~~~~~v~~~~~sp~~~~~~~~l-~sg~---~~~~W~~~~~~l~~~~~~~~~~  395 (696)
                      .+..+..+  ..+.+++|+|++    +.+ +++.   .+.+|+..+++++.....+...
T Consensus       236 ~~~~~~~~--~~~~~~~~s~dg----~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~  288 (391)
T 1l0q_A          236 ITARIPVG--PDPAGIAVTPDG----KKVYVALSFXNTVSVIDTATNTITATMAVGKNP  288 (391)
T ss_dssp             EEEEEECC--SSEEEEEECTTS----SEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             EEEEEecC--CCccEEEEccCC----CEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence            88888876  247889999998    655 4543   8999999999988877655433

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.2e-21  Score=204.66  Aligned_cols=260  Identities=10%  Similarity=0.045  Sum_probs=182.6

Q ss_pred             EEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc-----
Q 005459          263 SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-----  337 (696)
Q Consensus       263 ~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~-----  337 (696)
                      .+.+++++||+|+.||+|++||+.+ ++.+.++..          +.|.++.|+|+   +++|+.|++|++|+..     
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~-~~~~~~~~~----------~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~  108 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKD-SKTITTITT----------PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI  108 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESS-SSCEEEEEE----------ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCC-CcEEEEEec----------CCceeeeeCCc---eEEecCCCeEEEEEccCceEE
Confidence            4557889999999999999999988 666666652          46888899998   9999999999999765     


Q ss_pred             ----CCeeEEEeecccccceecccccC--CCCCCccceecce---eeEEEcCCCceEEEEecC-CcceE--EEEec-cee
Q 005459          338 ----GCRLMSTIRQISLSSISSPIVKP--NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG-SSERV--LIFSF-GKC  404 (696)
Q Consensus       338 ----~~~~~~~l~~~~~~~v~~~~~sp--~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~-~~~~v--~~~~~-~~~  404 (696)
                          .++.+..+...+...|.+++|+|  ++    +.+++|+   ++++|+.++++.+..... +...+  +++++ ++.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~  184 (343)
T 3lrv_A          109 LDSKTNKVLREIEVDSANEIIYMYGHNEVNT----EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLL  184 (343)
T ss_dssp             EETTTCCEEEEEECCCSSCEEEEECCC---C----CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCE
T ss_pred             eecCCcceeEEeecCCCCCEEEEEcCCCCCC----CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCE
Confidence                44445555533356799999999  87    8888887   899999999988776644 34355  66666 889


Q ss_pred             eeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec-CCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459          405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       405 ~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s  482 (696)
                      +++++.|+.+++||+.++..                   ++..+.. |..+|.+++|+|+|++||+++. +.+ +||+.+
T Consensus       185 lasg~~dg~i~iwd~~~~~~-------------------~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~  244 (343)
T 3lrv_A          185 LALYSPDGILDVYNLSSPDQ-------------------ASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRK  244 (343)
T ss_dssp             EEEECTTSCEEEEESSCTTS-------------------CCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTS
T ss_pred             EEEEcCCCEEEEEECCCCCC-------------------CccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCC
Confidence            99999999999999988775                   2356776 9999999999999999999995 488 999988


Q ss_pred             CceEe-cCCccceeeeEEE--eEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEc---cCC
Q 005459          483 KKWRV-FGDITQEQKIQSK--GLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDV---YED  554 (696)
Q Consensus       483 g~w~~-f~~~~~e~~~~v~--~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~---~~~  554 (696)
                      ++-.. +.. .....+.+.  .++|.  +.++++++    ..+..+++|+.+.-......  .+.  ..+.+.+   ...
T Consensus       245 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~l~~~s----~~d~~i~v~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~  315 (343)
T 3lrv_A          245 DVGTLAYPT-YTIPEFKTGTVTYDIDDSGKNMIAYS----NESNSLTIYKFDKKTKNWTK--DEE--SALCLQSDTADFT  315 (343)
T ss_dssp             STTCBSSCC-CBC-----CCEEEEECTTSSEEEEEE----TTTTEEEEEEECTTTCSEEE--EEE--EECCC----CCCC
T ss_pred             CCcceeecc-cccccccccceEEEECCCCCEEEEec----CCCCcEEEEEEcccccceEe--cCc--eeEecCccccccc
Confidence            75321 111 011223333  48886  45666651    22457999977522221111  111  1133333   445


Q ss_pred             EEEEEEcCceEEEEE
Q 005459          555 YILVTYRPFDVHIFH  569 (696)
Q Consensus       555 ~llv~~~d~~~~l~~  569 (696)
                      .+++++.|+.+.++-
T Consensus       316 ~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          316 DMDVVCGDGGIAAIL  330 (343)
T ss_dssp             EEEEEEETTEEEEEE
T ss_pred             eeEEEecCCceEEEE
Confidence            677777777776664

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.87  E-value=1.6e-19  Score=218.62  Aligned_cols=431  Identities=10%  Similarity=-0.037  Sum_probs=259.0

Q ss_pred             CceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecC----c--EEEEE
Q 005459           21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS----L--YLHIF   94 (696)
Q Consensus        21 ~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~d----g--~l~l~   94 (696)
                      ...-..||  |+.+|.++.+.|.+|+.. .+.. ..+.      .+.+.+.+++|||||++||.++.+    +  .|.+|
T Consensus        16 ~~~~~~~S--~~~iaf~~~~~l~~~~~~-gg~~-~~lt------~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~   85 (1045)
T 1k32_A           16 LLLNPDIH--GDRIIFVCCDDLWEHDLK-SGST-RKIV------SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFY   85 (1045)
T ss_dssp             CCEEEEEE--TTEEEEEETTEEEEEETT-TCCE-EEEE------CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEE
T ss_pred             eEeCcEEe--CCEEEEEECCcEEEEECC-CCcE-EEee------eCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEE
Confidence            34556788  458888877899999985 4332 2222      134667899999999999998653    3  67777


Q ss_pred             EEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecC----CcEEEEecCCccccceeec
Q 005459           95 KVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSD----GSLYSISWKGEFYGAFELV  170 (696)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~----g~i~~~~w~~~~~~~~~~~  170 (696)
                      ++..+... ....+..   .+       ..    ........++++|++.++++..+    +...++.|+........+ 
T Consensus        86 d~~~g~~~-~lt~~~~---~~-------~~----~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l-  149 (1045)
T 1k32_A           86 NGENGEIK-RITYFSG---KS-------TG----RRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL-  149 (1045)
T ss_dssp             ETTTTEEE-ECCCCCE---EE-------ET----TEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC-
T ss_pred             ECCCCCeE-EcccCCC---cc-------cc----cccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEe-
Confidence            76543211 1111100   00       00    00011234677888744444433    333344444322111100 


Q ss_pred             cCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeec------------
Q 005459          171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS------------  238 (696)
Q Consensus       171 ~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~------------  238 (696)
                                                        ....  ..          .+.++| | +++++..            
T Consensus       150 ----------------------------------~~~~--~~----------~~~~sp-G-~l~~~~~~~~~~~~~~~~g  181 (1045)
T 1k32_A          150 ----------------------------------NLGP--AT----------HILFAD-G-RRVIGRNTFELPHWKGYRG  181 (1045)
T ss_dssp             ----------------------------------CSCS--CS----------EEEEET-T-EEEEEESCSCCTTSTTCCS
T ss_pred             ----------------------------------cCCC--cc----------eeeeCC-C-EEEEeccCCCccccccccC
Confidence                                              0000  00          123556 6 5555432            


Q ss_pred             cCCceeeeeeec---ceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEE
Q 005459          239 KKGLKLAEFIKI---DKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA  314 (696)
Q Consensus       239 d~~~~~~~~~~~---~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~  314 (696)
                      +.+.++|.....   ..+.+|...+. ++|+++ ++++++..||+++||.++..+...+.+..        |. .+...+
T Consensus       182 ~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~--------~~-~~~~~~  251 (1045)
T 1k32_A          182 GTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTS--------FT-DYYPRH  251 (1045)
T ss_dssp             TTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCC--------CC-SSCEEE
T ss_pred             CCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecC--------CC-Ccceee
Confidence            223445543221   12256777766 999999 77788888999999998753444555554        44 467789


Q ss_pred             ECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc----------cccceeccccc-CCCCCCccceecce--eeEEEcCC
Q 005459          315 WTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI----------SLSSISSPIVK-PNQDCKYEPLMSGT--SMMQWDEY  381 (696)
Q Consensus       315 ~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~----------~~~~v~~~~~s-p~~~~~~~~l~sg~--~~~~W~~~  381 (696)
                      |||||+.||.+. ++.|.+|++.+.++. .+.++          +...+.+++|+ |++    +.++.+.  .+.+|+..
T Consensus       252 ~SpDG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG----~~la~~~~~~i~~~~~~  325 (1045)
T 1k32_A          252 LNTDGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDG----DLIAFVSRGQAFIQDVS  325 (1045)
T ss_dssp             EEESSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGG----GCEEEEETTEEEEECTT
T ss_pred             EcCCCCEEEEEe-CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCC----CEEEEEEcCEEEEEcCC
Confidence            999999999985 799999999655443 55542          12358899999 998    7776655  78889988


Q ss_pred             CceEEEEecCCcc-eEEEEec--ceeeeeccCCCCce-eeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEE
Q 005459          382 GYRLYAIEEGSSE-RVLIFSF--GKCCLNRGVSGMTY-ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH  457 (696)
Q Consensus       382 ~~~l~~~~~~~~~-~v~~~~~--~~~~~s~~~d~~~~-~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~  457 (696)
                      +++... ...|.. .+..+.+  ++.++.++.+..+. +|++..+.                     +..+.+|...+..
T Consensus       326 ~~~~~~-~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~---------------------~~~l~~~~~~~~~  383 (1045)
T 1k32_A          326 GTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK---------------------AEKFEENLGNVFA  383 (1045)
T ss_dssp             SSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC---------------------EEECCCCCCSEEE
T ss_pred             CCceEE-ccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCC---------------------ceEecCCccceee
Confidence            877554 345555 6655555  46677666654444 44433222                     1223367778999


Q ss_pred             EEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC--cEEEEEEeec-----CCCeEEEEEeeCC
Q 005459          458 VAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYID-----SSNTYELLFYPRY  529 (696)
Q Consensus       458 va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~-----~~~~~~lr~y~~~  529 (696)
                      ++|||||++||+++.++.+ +||+.+++.+....   .....+..++|.+  +.|+.++...     .....+|++|+.+
T Consensus       384 ~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~---~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          384 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER---SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             eEECCCCCEEEEECCCCeEEEEECCCCceEEecc---CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence            9999999999999999999 99999987654321   1112255788874  4566653332     1345799999875


Q ss_pred             CCCccceeEE--eecCCccEEEEccCCEEEEEEcCceEEEEE
Q 005459          530 HLDQSSLLCR--KSLLAKPIVMDVYEDYILVTYRPFDVHIFH  569 (696)
Q Consensus       530 ~l~~~~~~~~--~~~~~~~l~~~~~~~~llv~~~d~~~~l~~  569 (696)
                      .   ......  +......+.+++++.+|++.+.+....+|.
T Consensus       461 ~---g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          461 G---RKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             T---TEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             C---CcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence            1   111110  101111256788899988877666555554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.87  E-value=5.5e-21  Score=208.31  Aligned_cols=237  Identities=13%  Similarity=0.126  Sum_probs=181.2

Q ss_pred             CCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCC---------CceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eE
Q 005459          255 GSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAES---------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AF  322 (696)
Q Consensus       255 ~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~---------~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~l  322 (696)
                      .|.+.+. ++|+|+ +++||+|+.||.|++|++...         ......+.+        |.+.|.+|+|+|++. .|
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~--------h~~~v~~l~~~~~~~~~l  197 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG--------HQKEGYGLSWNPNLNGYL  197 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC--------CSSCCCCEEECTTSTTEE
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC--------CCCCeEEEEeCCCCCCeE
Confidence            4555565 999997 789999999999999999752         355667777        999999999999999 99


Q ss_pred             EEEEcCCcEEEEEccCCee-------EEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCc---eEEEEe
Q 005459          323 AVGWKSRGLTVWSVSGCRL-------MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY---RLYAIE  389 (696)
Q Consensus       323 asg~~Dg~v~vW~~~~~~~-------~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~---~l~~~~  389 (696)
                      ++|+.||.|++|++..+..       ...+.+| ...|.+++|+|++.   ..+++++   .+++|+.+..   +.+...
T Consensus       198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~---~~l~s~~~dg~i~i~d~~~~~~~~~~~~~  273 (430)
T 2xyi_A          198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGH-TAVVEDVAWHLLHE---SLFGSVADDQKLMIWDTRNNNTSKPSHTV  273 (430)
T ss_dssp             EEECTTSCEEEEETTSCCBGGGEEECSEEECCC-SSCEEEEEECSSCT---TEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred             EEEeCCCeEEEEeCCCCCCCCceeccceeecCC-CCCEeeeEEeCCCC---CEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence            9999999999999976321       3455566 67899999999531   6677765   8999999876   466666


Q ss_pred             cCCcceEEEEec---ce-eeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCC
Q 005459          390 EGSSERVLIFSF---GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM  465 (696)
Q Consensus       390 ~~~~~~v~~~~~---~~-~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~  465 (696)
                      ..|...|..+.+   ++ .+++++.|+++++|++.....                   ....+..|..+|.+++|+|+|+
T Consensus       274 ~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-------------------~~~~~~~h~~~v~~i~~sp~~~  334 (430)
T 2xyi_A          274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-------------------KLHSFESHKDEIFQVQWSPHNE  334 (430)
T ss_dssp             ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-------------------CSEEEECCSSCEEEEEECSSCT
T ss_pred             ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-------------------CeEEeecCCCCEEEEEECCCCC
Confidence            788888855544   44 588999999999999876544                   2456778999999999999995


Q ss_pred             -EEEEEeCCccE-EEEccCCce-------------EecCCccceeeeEEEeEeeeCc---EEEEEEeecCCCeEEEEEee
Q 005459          466 -FLAVAGLHGLI-LYDIRQKKW-------------RVFGDITQEQKIQSKGLLWLGK---IIVVCNYIDSSNTYELLFYP  527 (696)
Q Consensus       466 -~la~ag~dG~i-~w~~~sg~w-------------~~f~~~~~e~~~~v~~~~w~~~---~lv~~~~~~~~~~~~lr~y~  527 (696)
                       ++|+++.||.+ +||+....-             .++.-..  +.-.+..++|.++   +++++     +.+..|++|.
T Consensus       335 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~l~s~-----s~dg~i~iw~  407 (430)
T 2xyi_A          335 TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG--HTAKISDFSWNPNEPWIICSV-----SEDNIMQVWQ  407 (430)
T ss_dssp             TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC--CSSCEEEEEECSSSTTEEEEE-----ETTSEEEEEE
T ss_pred             CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCC--CCCCceEEEECCCCCCEEEEE-----ECCCCEEEeE
Confidence             69999999999 999987210             1111111  1223788999854   45554     2447899998


Q ss_pred             CC
Q 005459          528 RY  529 (696)
Q Consensus       528 ~~  529 (696)
                      ..
T Consensus       408 ~~  409 (430)
T 2xyi_A          408 MA  409 (430)
T ss_dssp             EC
T ss_pred             cc
Confidence            75

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.87  E-value=1.4e-19  Score=193.74  Aligned_cols=255  Identities=13%  Similarity=0.086  Sum_probs=190.6

Q ss_pred             CcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEE-EEEecCCeEEEEEccCCCceeeEEeeccCCCCCC
Q 005459          230 GQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD  305 (696)
Q Consensus       230 G~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~l-a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~  305 (696)
                      +.++++++.++++++||...++..   ..|....+++|+|+++.| ++++.|++|++||+.+ ++.+..+..        
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~-~~~~~~~~~--------   72 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPA--------   72 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEEC--------
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCC-CeEEEEEEC--------
Confidence            345677778899999998766543   556666679999999976 6777999999999987 777777765        


Q ss_pred             CCCCeEEEEECCCCCeEEEE-EcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce-ecce---eeEEEcC
Q 005459          306 DTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT---SMMQWDE  380 (696)
Q Consensus       306 h~g~V~~l~~spdg~~lasg-~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l-~sg~---~~~~W~~  380 (696)
                      +. .+.+++|+|||+.|+++ +.|+.|++||+.+++.+..+..+  ..+.+++|+|++    +.+ +++.   .+.+|+.
T Consensus        73 ~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~~~~v~~~d~  145 (391)
T 1l0q_A           73 GS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG--KSPLGLALSPDG----KKLYVTNNGDKTVSVINT  145 (391)
T ss_dssp             SS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTS----SEEEEEETTTTEEEEEET
T ss_pred             CC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC--CCcceEEECCCC----CEEEEEeCCCCEEEEEEC
Confidence            43 89999999999988655 46799999999999988888765  358899999998    655 4544   8999999


Q ss_pred             CCceEEEEecCCcceE-EEEec-ceee-eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEE
Q 005459          381 YGYRLYAIEEGSSERV-LIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH  457 (696)
Q Consensus       381 ~~~~l~~~~~~~~~~v-~~~~~-~~~~-~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~  457 (696)
                      .++++......+...- +.+++ ++.+ ++++.++.+++|++..+..                     .....+...+.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~---------------------~~~~~~~~~~~~  204 (391)
T 1l0q_A          146 VTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV---------------------IDTVKVEAAPSG  204 (391)
T ss_dssp             TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE---------------------EEEEECSSEEEE
T ss_pred             CCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE---------------------EEEEecCCCccc
Confidence            9999888776554332 66666 6555 6788899999999765432                     112234557899


Q ss_pred             EEEcCCCCEEEEEe---CCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459          458 VAASKDGMFLAVAG---LHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       458 va~s~dG~~la~ag---~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      ++|+|||+++++++   .++.+ +||+.+++.....  ...  ..+.+++|.  ++.+++++    ..+..|++|+.+
T Consensus       205 ~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~--~~~--~~~~~~~~s~dg~~l~~s~----~~d~~v~v~d~~  274 (391)
T 1l0q_A          205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI--PVG--PDPAGIAVTPDGKKVYVAL----SFXNTVSVIDTA  274 (391)
T ss_dssp             EEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE--ECC--SSEEEEEECTTSSEEEEEE----TTTTEEEEEETT
T ss_pred             eEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE--ecC--CCccEEEEccCCCEEEEEc----CCCCEEEEEECC
Confidence            99999999999998   68999 9999987633211  111  125678887  44565542    344689999875

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.87  E-value=2.7e-20  Score=202.35  Aligned_cols=279  Identities=9%  Similarity=0.002  Sum_probs=198.2

Q ss_pred             CCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459          255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW  334 (696)
Q Consensus       255 ~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW  334 (696)
                      .+....+++|+|+++++++++.|++|++||+.+ ++..+.+....   ..+|.+.|.+++|+|+|+.+++++.|+.|++|
T Consensus       121 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~  196 (433)
T 3bws_A          121 TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINS-GQTVRLSPPEK---YKKKLGFVETISIPEHNELWVSQMQANAVHVF  196 (433)
T ss_dssp             CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTT-CCEEEECCCHH---HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEE
T ss_pred             CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCC-CeEeeecCccc---ccccCCceeEEEEcCCCEEEEEECCCCEEEEE
Confidence            344555699999888999999999999999987 66554322100   01388999999999999999999999999999


Q ss_pred             EccCCeeEEEeecccccceecccccCCCCCCccce-ecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeee
Q 005459          335 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLN  407 (696)
Q Consensus       335 ~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l-~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s  407 (696)
                      |+.+++...++..| ...+.+++|+|++    +.+ +++.   .+.+|++.+++.......+. .+  +++++ ++.+++
T Consensus       197 d~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~  270 (433)
T 3bws_A          197 DLKTLAYKATVDLT-GKWSKILLYDPIR----DLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELYI  270 (433)
T ss_dssp             ETTTCCEEEEEECS-SSSEEEEEEETTT----TEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEEE
T ss_pred             ECCCceEEEEEcCC-CCCeeEEEEcCCC----CEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEEE
Confidence            99999988888876 5679999999998    555 4442   89999999999887776543 35  55666 667777


Q ss_pred             cc--------CCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEE-EEEeCCccE-E
Q 005459          408 RG--------VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFL-AVAGLHGLI-L  477 (696)
Q Consensus       408 ~~--------~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~l-a~ag~dG~i-~  477 (696)
                      ++        .|+.+++|++..++.                     .....|...+.+++|+|||+++ ++++.+|.+ +
T Consensus       271 ~~~~~~~~~~~dg~i~~~d~~~~~~---------------------~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v  329 (433)
T 3bws_A          271 AQFSASNQESGGGRLGIYSMDKEKL---------------------IDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEV  329 (433)
T ss_dssp             EEEESCTTCSCCEEEEEEETTTTEE---------------------EEEEEEEECEEEEEECSSTTEEEEEETTTTEEEE
T ss_pred             EECCCCccccCCCeEEEEECCCCcE---------------------EeeccCCCCcceEEECCCCCEEEEEecCCCEEEE
Confidence            76        477888888764432                     1122344578899999999865 566889999 9


Q ss_pred             EEccCCceEecCCccceeeeEEEeEeeeC--cEEEEEEeecC----------CCeEEEEEeeCCCCCccceeEEeecCCc
Q 005459          478 YDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDS----------SNTYELLFYPRYHLDQSSLLCRKSLLAK  545 (696)
Q Consensus       478 w~~~sg~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~----------~~~~~lr~y~~~~l~~~~~~~~~~~~~~  545 (696)
                      ||+.+++.....    .....+.+++|.+  +.+++++....          ..+..|++|+....   ...........
T Consensus       330 ~d~~~~~~~~~~----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---~~~~~~~~~~~  402 (433)
T 3bws_A          330 YDLKEKKVQKSI----PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---TVKEFWEAGNQ  402 (433)
T ss_dssp             EETTTTEEEEEE----ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---EEEEEEECSSS
T ss_pred             EECCCCcEEEEe----cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC---cEEEEecCCCC
Confidence            999987643211    1112266888874  46666643211          11458999987521   12222222332


Q ss_pred             --cEEEEccCCEEEEEEc-CceEEEEEEE
Q 005459          546 --PIVMDVYEDYILVTYR-PFDVHIFHVK  571 (696)
Q Consensus       546 --~l~~~~~~~~llv~~~-d~~~~l~~~~  571 (696)
                        .+.+++++++|++++. |+.+++|+++
T Consensus       403 ~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          403 PTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             CceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence              3566788889988765 8999999763

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.86  E-value=1.6e-20  Score=202.08  Aligned_cols=261  Identities=11%  Similarity=0.055  Sum_probs=154.1

Q ss_pred             ceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEE-EeecChHHHhhcccccEEEEcC--------CCcEEEEEecCcEE
Q 005459           22 QQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLG-KYKRDSESVQREGENLQAVWSP--------DTKLIAVVTSSLYL   91 (696)
Q Consensus        22 ~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~-~~~r~~~sl~~~G~~~~v~wsP--------Dg~~lav~t~dg~l   91 (696)
                      .....++++++++|+++ |++|+||+.+ ...... .......  .+.+.+.+++|+|        ||++||+++.|++|
T Consensus        92 ~~~~~~~~~~~~las~~~d~~v~lw~~~-~~~~~~~~~~~~~~--gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv  168 (393)
T 4gq1_A           92 GNVNSSPVYSLFLACVCQDNTVRLIITK-NETIITQHVLGGKS--GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL  168 (393)
T ss_dssp             -----CCEEEEEEEEEETTSCEEEEEEE-TTEEEEEEEECTTT--SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred             cceeecCCCCCEEEEEeCCCcEEEEECC-CCccceeeeecccC--CCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence            33456778888999885 7899999986 333222 2222221  1457889999998        99999999999999


Q ss_pred             EEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCC-CeEEEEecCCcEEEEecCCcccccee
Q 005459           92 HIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFE  168 (696)
Q Consensus        92 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~-~~llv~t~~g~i~~~~w~~~~~~~~~  168 (696)
                      +|||+..+......                       ..+...+.  ++.+++ ..+++++.||.|++|++.........
T Consensus       169 ~~Wd~~~~~~~~~~-----------------------~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~  225 (393)
T 4gq1_A          169 IIWRLTDEGPILAG-----------------------YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEEN  225 (393)
T ss_dssp             EEEEEETTEEEEEE-----------------------EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----
T ss_pred             EEEECCCCceeeee-----------------------cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccc
Confidence            99999754321111                       11112233  445555 46888999999999766532211110


Q ss_pred             eccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeee
Q 005459          169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI  248 (696)
Q Consensus       169 ~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~  248 (696)
                       ...+....   ...++....       ..........+...+..+         .+..+||+.+++++.|+++++||..
T Consensus       226 -~~~~~~~~---~~~~s~~~~-------~~~~~~~~~~~~~~v~~v---------~~~~~dg~~l~s~s~d~~i~vwd~~  285 (393)
T 4gq1_A          226 -SQTELVKN---PWLLTLNTL-------PLVNTCHSSGIASSLANV---------RWIGSDGSGILAMCKSGAWLRWNLF  285 (393)
T ss_dssp             ------CSC---CCSEEEESG-------GGC------CCSSSCSEE---------EEETTTTCEEEEECTTSEEEEEEC-
T ss_pred             -cccCCccc---ceEEecccc-------cceeeeecccccccceee---------eeecCCCCEEEEEeCCCCEEEEECc
Confidence             00000000   000000000       000000011122223222         2234899999999999999999976


Q ss_pred             eccee---cCCC-------------------CeEEEEEcC--CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCC
Q 005459          249 KIDKE---LGSG-------------------DAVCASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM  304 (696)
Q Consensus       249 ~~~~~---~~~~-------------------~~v~v~~sp--~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~  304 (696)
                      ..+..   ..|.                   ..+.+.++|  ++.++++|+.||+|++||+.+ +.....+..       
T Consensus       286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~-------  357 (393)
T 4gq1_A          286 ANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYE-KDSNSIPIQ-------  357 (393)
T ss_dssp             ------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTC-TTCCEEEEE-------
T ss_pred             cCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCC-CcEEEEecC-------
Confidence            44321   1111                   122233444  455788899999999999988 677777777       


Q ss_pred             CCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459          305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       305 ~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~  338 (696)
                       |..+|++|+|||||++||++++ +++.+|.+.+
T Consensus       358 -~~~~V~svafspdG~~LA~as~-~Gv~lvrL~g  389 (393)
T 4gq1_A          358 -LGMPIVDFCWHQDGSHLAIATE-GSVLLTRLMG  389 (393)
T ss_dssp             -CSSCEEEEEECTTSSEEEEEES-SEEEEEEEGG
T ss_pred             -CCCcEEEEEEcCCCCEEEEEeC-CCeEEEEEeC
Confidence             8899999999999999999987 5688887654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.86  E-value=4.2e-20  Score=189.59  Aligned_cols=147  Identities=7%  Similarity=0.032  Sum_probs=107.5

Q ss_pred             EEEEEe---CCcEEEEeeccCCceeeeeeeccee---cCCC---CeEE-EEEcCCCcEE------------EEEecCCeE
Q 005459          223 LFVLYS---NGQLMSCSVSKKGLKLAEFIKIDKE---LGSG---DAVC-ASIAPEQQIL------------AVGTRRGVV  280 (696)
Q Consensus       223 ~~~~s~---dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~---~~v~-v~~sp~~~~l------------a~g~~dg~v  280 (696)
                      .+.|++   ||.++++++.|+++++||..+++.+   .+|.   ..++ ++|+|+++++            |+|+.|++|
T Consensus       183 ~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI  262 (356)
T 2w18_A          183 ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL  262 (356)
T ss_dssp             EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEE
T ss_pred             eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE
Confidence            345677   7899999999999999999887654   3332   3454 8999999986            678899999


Q ss_pred             EEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccC
Q 005459          281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP  360 (696)
Q Consensus       281 ~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp  360 (696)
                      ++||..+ +..+..+..   .+..+|.+.+.+.+++  |..+|+|+.|++|+|||+.+++++.+|++|....+.+++|+|
T Consensus       263 klWd~~t-gk~l~v~~~---~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP  336 (356)
T 2w18_A          263 IVINPKT-TLSVGVMLY---CLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG  336 (356)
T ss_dssp             EEEETTT-TEEEEEEEE---CCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS
T ss_pred             EEEECCC-CEEEEEEEe---eccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC
Confidence            9999987 666655431   1122477776555554  889999999999999999999999999988444455689999


Q ss_pred             CCCCCccceecce---eeEEEc
Q 005459          361 NQDCKYEPLMSGT---SMMQWD  379 (696)
Q Consensus       361 ~~~~~~~~l~sg~---~~~~W~  379 (696)
                      ++    +.+++|+   ++++|+
T Consensus       337 DG----~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          337 TD----SHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             SS----SEEEEECTTSCEEEEE
T ss_pred             CC----CEEEEEECCCcEEEec
Confidence            98    6666555   555554

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.86  E-value=7.2e-20  Score=198.94  Aligned_cols=261  Identities=14%  Similarity=0.113  Sum_probs=198.5

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeeccee--------cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeE
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--------LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRT  294 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--------~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~  294 (696)
                      ++++|++++++++..++++++||...++..        .+|...+. ++|+|+++++++++.|+.|++||+++ ++.+.+
T Consensus       128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~-~~~~~~  206 (433)
T 3bws_A          128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT-LAYKAT  206 (433)
T ss_dssp             CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT-CCEEEE
T ss_pred             EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC-ceEEEE
Confidence            457788888888888889999998765433        36777777 99999999999999999999999987 777777


Q ss_pred             EeeccCCCCCCCCCCeEEEEECCCCCeEEE-EEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459          295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT  373 (696)
Q Consensus       295 ~~~~~~~~~~~h~g~V~~l~~spdg~~las-g~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~  373 (696)
                      +..        |...+.+++|+|||+.+++ ++.|+.|++||+.+++.+..+..+  ..+.+++|+|++    +.++++.
T Consensus       207 ~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g----~~l~~~~  272 (433)
T 3bws_A          207 VDL--------TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI--GLPRGLLLSKDG----KELYIAQ  272 (433)
T ss_dssp             EEC--------SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC--SEEEEEEECTTS----SEEEEEE
T ss_pred             EcC--------CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC--CCceEEEEcCCC----CEEEEEE
Confidence            877        8899999999999998854 557999999999999988888765  348999999998    6666554


Q ss_pred             -----------eeEEEcCCCceEEEEecCCcceE--EEEec-ce-eeeeccCCCCceeeeeeecCCeEEEEecCCCCcce
Q 005459          374 -----------SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK  438 (696)
Q Consensus       374 -----------~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~-~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~  438 (696)
                                 .+.+|++.++++.... .+...+  .++++ ++ .+++++.++.+++|++..++.              
T Consensus       273 ~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~--------------  337 (433)
T 3bws_A          273 FSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV--------------  337 (433)
T ss_dssp             EESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE--------------
T ss_pred             CCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE--------------
Confidence                       6779999988877665 233344  55666 54 557778999999999764332              


Q ss_pred             eEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC---------------CccE-EEEccCCceEecCCccceeeeEEEeE
Q 005459          439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL---------------HGLI-LYDIRQKKWRVFGDITQEQKIQSKGL  502 (696)
Q Consensus       439 w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~---------------dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~  502 (696)
                            .. ...+...+.+++|+|||+++++++.               ||.+ +||..+++....-.    ....+.++
T Consensus       338 ------~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~----~~~~~~~~  406 (433)
T 3bws_A          338 ------QK-SIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE----AGNQPTGL  406 (433)
T ss_dssp             ------EE-EEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE----CSSSEEEE
T ss_pred             ------EE-EecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec----CCCCCceE
Confidence                  11 2235667899999999999999887               5789 99999886432111    11236788


Q ss_pred             eee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459          503 LWL--GKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       503 ~w~--~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      +|.  ++.+++++    ..+..|++|+.+
T Consensus       407 ~~s~dg~~l~~~~----~~d~~i~v~~~~  431 (433)
T 3bws_A          407 DVSPDNRYLVISD----FLDHQIRVYRRD  431 (433)
T ss_dssp             EECTTSCEEEEEE----TTTTEEEEEEET
T ss_pred             EEcCCCCEEEEEE----CCCCeEEEEEec
Confidence            886  44666652    234689999764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.85  E-value=3.4e-19  Score=199.57  Aligned_cols=341  Identities=9%  Similarity=0.065  Sum_probs=208.1

Q ss_pred             EEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEE--EecCcc
Q 005459           26 YFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV--QITEKS  102 (696)
Q Consensus        26 ~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l--~~~~~~  102 (696)
                      .|+|+|+++++. .+++|.+||.. .+..+..+.-      .+. ...++|||||++|++++.++.|.+||+  .+..  
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~-t~~~~~~i~~------g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~--  213 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGD-SKKIVKVIDT------GYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT--  213 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETT-TCCEEEEEEC------STT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE--
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECC-CceEEEEEec------Ccc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc--
Confidence            489999988888 46799999995 5555554431      112 457899999999999999999999998  3221  


Q ss_pred             cccCCCCCCCceeeeeeEEEeeeccccccceeEEEeee----CCCeEEEEec-CCcEEEEecCCccccceeeccCCCCCc
Q 005459          103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS----DNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSS  177 (696)
Q Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~----~~~~llv~t~-~g~i~~~~w~~~~~~~~~~~~~p~~~~  177 (696)
                                 .+..        +.. +....-.++++    ++++++++.. ++.|.+|+  ........         
T Consensus       214 -----------~~~~--------i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D--~~t~~~~~---------  262 (543)
T 1nir_A          214 -----------KVAE--------IKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD--GETLEPKQ---------  262 (543)
T ss_dssp             -----------EEEE--------EEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEE--TTTCCEEE---------
T ss_pred             -----------EEEE--------Eec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEe--ccccccce---------
Confidence                       1111        111 11122336778    8999999874 78888754  33322111         


Q ss_pred             ccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEE-EeeccCCceeeeeeeccee---
Q 005459          178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMS-CSVSKKGLKLAEFIKIDKE---  253 (696)
Q Consensus       178 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~-~~~~d~~~~~~~~~~~~~~---  253 (696)
                         .++.....           ...........+..          +.++++|+.++ +...++++.+||....+..   
T Consensus       263 ---~i~~~g~~-----------~~~~~~~~~~~v~~----------i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~  318 (543)
T 1nir_A          263 ---IVSTRGMT-----------VDTQTYHPEPRVAA----------IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT  318 (543)
T ss_dssp             ---EEECCEEC-----------SSSCCEESCCCEEE----------EEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE
T ss_pred             ---eecccCcc-----------cCccccccCCceEE----------EEECCCCCEEEEEECCCCeEEEEEecCCCcceeE
Confidence               11100000           00000000112333          44677666544 4445777888886543221   


Q ss_pred             -cCCCCeEE-EEEcCCCcEEEEE-ecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEE-cC
Q 005459          254 -LGSGDAVC-ASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGW-KS  328 (696)
Q Consensus       254 -~~~~~~v~-v~~sp~~~~la~g-~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~-~D  328 (696)
                       ..+..... ++|+|+++++.++ ..+++|.+||+.+ ++++.++.....    .|.+....+ ++|+ |..++++. .|
T Consensus       319 ~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t-g~l~~~i~~g~~----ph~g~g~~~-~~p~~g~~~~s~~~~d  392 (543)
T 1nir_A          319 SIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKT----PHPGRGANF-VHPKYGPVWSTSHLGD  392 (543)
T ss_dssp             EEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSS----BCCTTCEEE-EETTTEEEEEEEBSSS
T ss_pred             EeccCcCccCceECCCCCEEEEEecCCCeEEEEECCC-CeEEEeeccCCC----CCCCCCccc-CCCCCccEEEeccCCC
Confidence             12334444 8999999976655 4689999999998 777777764222    266655444 4777 77777775 68


Q ss_pred             CcEEEEEccC-------CeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEec
Q 005459          329 RGLTVWSVSG-------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF  401 (696)
Q Consensus       329 g~v~vW~~~~-------~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~  401 (696)
                      ++|++|++.+       .+++.++.+|+ ..+..++++|++    +.+.++.                ..+.+       
T Consensus       393 ~~V~v~d~~~~~~~~~~~~~v~~l~~~g-~~~~~v~~~pdg----~~l~v~~----------------~~~~~-------  444 (543)
T 1nir_A          393 GSISLIGTDPKNHPQYAWKKVAELQGQG-GGSLFIKTHPKS----SHLYVDT----------------TFNPD-------  444 (543)
T ss_dssp             SEEEEEECCTTTCTTTBTSEEEEEECSC-SCCCCEECCTTC----CEEEECC----------------TTCSS-------
T ss_pred             ceEEEEEeCCCCCchhcCeEEEEEEcCC-CCceEEEcCCCC----CcEEEec----------------CCCCC-------
Confidence            9999999987       78889998873 446777888887    4333211                00000       


Q ss_pred             ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCe----eeecCCCceEEEEEcCCCCEEEEEe-----C
Q 005459          402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV----SYISQNWPVQHVAASKDGMFLAVAG-----L  472 (696)
Q Consensus       402 ~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~----~~~~~~~~I~~va~s~dG~~la~ag-----~  472 (696)
                            ...+.++.+||+.+++...             ..  +|-    .+..+...+..++|+|||++|.++.     .
T Consensus       445 ------~~~~~~v~v~d~~~~~~~~-------------~~--~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~  503 (543)
T 1nir_A          445 ------ARISQSVAVFDLKNLDAKY-------------QV--LPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKND  503 (543)
T ss_dssp             ------HHHHTCEEEEETTCTTSCC-------------EE--ECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTS
T ss_pred             ------cccCceEEEEECCCCCCCe-------------EE--eechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCC
Confidence                  0014455666655444310             00  000    0123456799999999999998772     4


Q ss_pred             CccE-EEEccCCceE
Q 005459          473 HGLI-LYDIRQKKWR  486 (696)
Q Consensus       473 dG~i-~w~~~sg~w~  486 (696)
                      ++.| +||..|++.+
T Consensus       504 ~~~i~v~D~~t~~~~  518 (543)
T 1nir_A          504 SSALVVVDDKTLKLK  518 (543)
T ss_dssp             CCEEEEEETTTTEEE
T ss_pred             CCeEEEEECCCceEE
Confidence            7889 9999998754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.82  E-value=4.8e-18  Score=198.11  Aligned_cols=341  Identities=13%  Similarity=0.082  Sum_probs=207.1

Q ss_pred             ccccEEEEcCCCcEEEEEec-Cc-----EEEEEEEEecCcccccCCC--CCCCceeeeeeEEEeeeccccc-cceeEEEe
Q 005459           68 GENLQAVWSPDTKLIAVVTS-SL-----YLHIFKVQITEKSIQIGGK--QPSGLFFIKISLVLNEQLPFAE-KGLSVSNI  138 (696)
Q Consensus        68 G~~~~v~wsPDg~~lav~t~-dg-----~l~l~~l~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~  138 (696)
                      +.+..++|||||++||+++. +|     .|++||++++........+  .+.+..+..-.-...+.....+ ....-.++
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence            34678999999999999998 88     8999998766532221111  1000000000000000000000 01122367


Q ss_pred             eeCCCeEEEEecCCcEEEEecCCccc-cceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEc
Q 005459          139 VSDNKHMLLGLSDGSLYSISWKGEFY-GAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC  217 (696)
Q Consensus       139 ~~~~~~llv~t~~g~i~~~~w~~~~~-~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  217 (696)
                      ++|++.|++++. +.|++++.++... ...                                   .+..+...+..    
T Consensus       117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~-----------------------------------~l~~~~~~~~~----  156 (741)
T 2ecf_A          117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVR-----------------------------------QLTHGEGFATD----  156 (741)
T ss_dssp             CTTSSEEEEEET-TEEEEEESSSCSTTSCC-----------------------------------BCCCSSSCEEE----
T ss_pred             CCCCCEEEEEeC-CcEEEEECCCCCcceEE-----------------------------------EcccCCccccc----
Confidence            889999888876 8887765443200 100                                   11112223444    


Q ss_pred             cCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCe----------------EE-EEEcCCCcEEEEEecC
Q 005459          218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDA----------------VC-ASIAPEQQILAVGTRR  277 (696)
Q Consensus       218 ~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~----------------v~-v~~sp~~~~la~g~~d  277 (696)
                            +.++|||+.++.++. ..+.+|+...++..   ..+...                +. ++|||||+.||+++.|
T Consensus       157 ------~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d  229 (741)
T 2ecf_A          157 ------AKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARID  229 (741)
T ss_dssp             ------EEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEE
T ss_pred             ------ccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEc
Confidence                  447889998877664 47888887654332   222221                24 9999999999999887


Q ss_pred             C---------------------------------eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE
Q 005459          278 G---------------------------------VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV  324 (696)
Q Consensus       278 g---------------------------------~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las  324 (696)
                      +                                 .|.+||+++. .....+...     ..|...+..++| |||+.|++
T Consensus       230 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~-~~~~~~~~~-----~~~~~~~~~~~~-pDg~~l~~  302 (741)
T 2ecf_A          230 ESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ-AQTQWIDLG-----KEQDIYLARVNW-RDPQHLSF  302 (741)
T ss_dssp             CTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT-CCCEEECCC-----SCSSEEEEEEEE-EETTEEEE
T ss_pred             CCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC-CceEEecCC-----CCcceEEEEEEe-CCCCEEEE
Confidence            6                                 7888887641 222222210     127788999999 99999998


Q ss_pred             EEc-----CCcEEEEEccCCeeEEEeeccccc---ceecccccCCCCCCccceecce---eeEEE--cCCCceEEEEecC
Q 005459          325 GWK-----SRGLTVWSVSGCRLMSTIRQISLS---SISSPIVKPNQDCKYEPLMSGT---SMMQW--DEYGYRLYAIEEG  391 (696)
Q Consensus       325 g~~-----Dg~v~vW~~~~~~~~~~l~~~~~~---~v~~~~~sp~~~~~~~~l~sg~---~~~~W--~~~~~~l~~~~~~  391 (696)
                      ++.     +..|.+||+.++++...+..+...   .+..++|+|++    +.++++.   ...+|  +..+.  ...+..
T Consensus       303 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg----~~~~~~~~~g~~~l~~~~~~~~--~~~l~~  376 (741)
T 2ecf_A          303 QRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG----SILWSSERTGFQHLYRIDSKGK--AAALTH  376 (741)
T ss_dssp             EEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS----CEEEEECTTSSCEEEEECSSSC--EEESCC
T ss_pred             EEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC----eEEEEecCCCccEEEEEcCCCC--eeeeee
Confidence            765     567999999998877777665332   35689999998    6555543   34455  44444  555556


Q ss_pred             CcceE---EEEec-ceee-eeccCCC--CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC
Q 005459          392 SSERV---LIFSF-GKCC-LNRGVSG--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG  464 (696)
Q Consensus       392 ~~~~v---~~~~~-~~~~-~s~~~d~--~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG  464 (696)
                      +...+   ..+++ ++.+ ++++.++  .+++|.+.....                   .+..+.. ...+.+++|||||
T Consensus       377 ~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~-------------------~~~~l~~-~~~~~~~~~spdg  436 (741)
T 2ecf_A          377 GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG-------------------QPQRLSK-APGMHSASFARNA  436 (741)
T ss_dssp             SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC-------------------CCEECCC-SCSEEEEEECTTS
T ss_pred             cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC-------------------Ceeeccc-CCCceEEEECCCC
Confidence            55555   24677 6555 4566665  788998864322                   1233333 4568899999999


Q ss_pred             CEEEEEeCC----ccE-EEEccCCceEec
Q 005459          465 MFLAVAGLH----GLI-LYDIRQKKWRVF  488 (696)
Q Consensus       465 ~~la~ag~d----G~i-~w~~~sg~w~~f  488 (696)
                      ++||....+    +.+ +|+...+..+.+
T Consensus       437 ~~l~~~~~~~~~p~~~~l~~~~~~~~~~l  465 (741)
T 2ecf_A          437 SVYVDSWSNNSTPPQIELFRANGEKIATL  465 (741)
T ss_dssp             SEEEEEEEETTEEEEEEEEETTSCEEECS
T ss_pred             CEEEEEecCCCCCCeEEEEEcCCCeEEEe
Confidence            999887654    456 888776655544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.80  E-value=1.4e-18  Score=188.21  Aligned_cols=205  Identities=13%  Similarity=0.065  Sum_probs=148.9

Q ss_pred             EEEEeCCcEEEEeeccC---Cceeeeeeeccee--cCCCCeEE-EEEcCCCcEEE-EEecCCe--EEEEEccCCCceeeE
Q 005459          224 FVLYSNGQLMSCSVSKK---GLKLAEFIKIDKE--LGSGDAVC-ASIAPEQQILA-VGTRRGV--VELYDLAESASLIRT  294 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~---~~~~~~~~~~~~~--~~~~~~v~-v~~sp~~~~la-~g~~dg~--v~vw~~~~~~~~~~~  294 (696)
                      ++++|||+.+++++.++   ++++||..+++..  ..|...+. ++|||||+.|| +++.||.  |++||+++ ++. ..
T Consensus       184 ~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-~~~-~~  261 (415)
T 2hqs_A          184 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQI-RQ  261 (415)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCE-EE
T ss_pred             eEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC-CCE-Ee
Confidence            45889999888888764   7889998765432  55666665 99999999888 6666665  88999876 443 45


Q ss_pred             EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC-C--cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceec
Q 005459          295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS  371 (696)
Q Consensus       295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D-g--~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~s  371 (696)
                      +..        |.+.+.+++|||||+.|++++.+ +  .|.+||+.+++. ..+..+ ...+.+++|+|++    +.++.
T Consensus       262 l~~--------~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~spdG----~~l~~  327 (415)
T 2hqs_A          262 VTD--------GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWE-GSQNQDADVSSDG----KFMVM  327 (415)
T ss_dssp             CCC--------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCS-SSEEEEEEECTTS----SEEEE
T ss_pred             CcC--------CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecC-CCcccCeEECCCC----CEEEE
Confidence            555        88899999999999999988864 4  577779888764 344444 4568889999998    76664


Q ss_pred             ce------eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCC---CceeeeeeecCCeEEEEecCCCCcceeEE
Q 005459          372 GT------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSG---MTYARQVIYGEDRLLVVQSEDTDELKILH  441 (696)
Q Consensus       372 g~------~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~---~~~~w~~~~~~~~~~~~~~~~~~~~~w~~  441 (696)
                      +.      .+.+|+.+++++..........-..+++ ++.+++++.++   .+.+|++. +..                 
T Consensus       328 ~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~-----------------  389 (415)
T 2hqs_A          328 VSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRF-----------------  389 (415)
T ss_dssp             EEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCC-----------------
T ss_pred             EECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCc-----------------
Confidence            43      6889999988875443322222266777 78788777766   56677653 322                 


Q ss_pred             eecCeeeecCCCceEEEEEcCCCC
Q 005459          442 LNLPVSYISQNWPVQHVAASKDGM  465 (696)
Q Consensus       442 ~~~~~~~~~~~~~I~~va~s~dG~  465 (696)
                         ...+.+|++.|++++|||.-.
T Consensus       390 ---~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          390 ---KARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             ---EEECCCSSSEEEEEEECCCCC
T ss_pred             ---EEEeeCCCCCCcCCccccccc
Confidence               345667889999999999643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.79  E-value=2e-17  Score=185.19  Aligned_cols=288  Identities=10%  Similarity=0.008  Sum_probs=198.5

Q ss_pred             EEEEeCCcEEEEeeccCCceeeee--eeccee---cCCCCeEEEEEcC----CCcEEEEEec-CCeEEEEEccCCCceee
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEF--IKIDKE---LGSGDAVCASIAP----EQQILAVGTR-RGVVELYDLAESASLIR  293 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~--~~~~~~---~~~~~~v~v~~sp----~~~~la~g~~-dg~v~vw~~~~~~~~~~  293 (696)
                      ++++|||+.+++++.++++.+||.  .+++..   ..+..+..++|||    ||++|++++. +++|.+||..+ .+.++
T Consensus       184 v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t-~~~~~  262 (543)
T 1nir_A          184 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-LEPKQ  262 (543)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-CCEEE
T ss_pred             EEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc-cccce
Confidence            568999999999999999999998  555432   3223343499999    9999999984 89999999987 77777


Q ss_pred             EEeeccCCCCC--CCCC-CeEEEEECCCCCe-EEEEEcCCcEEEEEccCCeeEE--EeecccccceecccccCCCCCCcc
Q 005459          294 TVSLYDWGYSM--DDTG-PVSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMS--TIRQISLSSISSPIVKPNQDCKYE  367 (696)
Q Consensus       294 ~~~~~~~~~~~--~h~g-~V~~l~~spdg~~-lasg~~Dg~v~vW~~~~~~~~~--~l~~~~~~~v~~~~~sp~~~~~~~  367 (696)
                      ++.........  -|.+ .+..+.+|||+.. +++...++.|.+||+.+...+.  ++. + ...+..++|+|++    +
T Consensus       263 ~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~-~~~~~~~~~spdg----~  336 (543)
T 1nir_A          263 IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-A-APFLHDGGWDSSH----R  336 (543)
T ss_dssp             EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-C-CSSCCCEEECTTS----C
T ss_pred             eecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-c-CcCccCceECCCC----C
Confidence            77652111000  0223 7999999997765 5666778999999998755433  443 2 3447788999998    7


Q ss_pred             ceecce----eeEEEcCCCceEEEEecC----CcceEEE-Eec--ceeeeecc-CCCCceeeeeeecCCeEEEEecCCCC
Q 005459          368 PLMSGT----SMMQWDEYGYRLYAIEEG----SSERVLI-FSF--GKCCLNRG-VSGMTYARQVIYGEDRLLVVQSEDTD  435 (696)
Q Consensus       368 ~l~sg~----~~~~W~~~~~~l~~~~~~----~~~~v~~-~~~--~~~~~s~~-~d~~~~~w~~~~~~~~~~~~~~~~~~  435 (696)
                      +++.+.    ++.+||..++++......    |..+... +++  +...++++ .|+++.+|+......          +
T Consensus       337 ~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~----------~  406 (543)
T 1nir_A          337 YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH----------P  406 (543)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC----------T
T ss_pred             EEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCC----------c
Confidence            654332    889999999999887653    5433333 344  55566665 578999999765221          0


Q ss_pred             cceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC-------CccE-EEEccCCceE-ecCCcc-----ceeeeEEEe
Q 005459          436 ELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL-------HGLI-LYDIRQKKWR-VFGDIT-----QEQKIQSKG  501 (696)
Q Consensus       436 ~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~-------dG~i-~w~~~sg~w~-~f~~~~-----~e~~~~v~~  501 (696)
                      +..|+   +..++..|...+..++++|||++|++++.       ++.| +||+.+++-. ......     .|..-.+..
T Consensus       407 ~~~~~---~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~  483 (543)
T 1nir_A          407 QYAWK---KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ  483 (543)
T ss_dssp             TTBTS---EEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEE
T ss_pred             hhcCe---EEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEe
Confidence            11121   24566677778889999999999999982       6788 9999988632 110110     122234667


Q ss_pred             Eeee--CcEEEEEEeecCCCeEEEEEeeCCCC
Q 005459          502 LLWL--GKIIVVCNYIDSSNTYELLFYPRYHL  531 (696)
Q Consensus       502 ~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l  531 (696)
                      +.+.  ++.+.+++.+..+.+..|.+|+..++
T Consensus       484 ~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~  515 (543)
T 1nir_A          484 PEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL  515 (543)
T ss_dssp             EEECSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             ccCCCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence            7775  67788776654456689999988633

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.79  E-value=2.1e-18  Score=200.57  Aligned_cols=316  Identities=10%  Similarity=0.035  Sum_probs=185.1

Q ss_pred             cccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEE
Q 005459           69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG  148 (696)
Q Consensus        69 ~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~  148 (696)
                      ...+++|||||+++++ +.||.|++||+.++........+....                  ....-.++++|+++|+.+
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~------------------~~v~~~~~SpDg~~l~~~   78 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIES------------------LRAIRYEISPDREYALFS   78 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTT------------------TTCSEEEECTTSSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccc------------------cccceEEECCCCCEEEEE
Confidence            4568999999997776 789999999998665432221111000                  011223678899999988


Q ss_pred             ecC---------CcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccC
Q 005459          149 LSD---------GSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP  219 (696)
Q Consensus       149 t~~---------g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  219 (696)
                      +.+         +.+.+++.++  .....+....                                .+...+.       
T Consensus        79 ~~~~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~--------------------------------~~~~~~~-------  117 (723)
T 1xfd_A           79 YNVEPIYQHSYTGYYVLSKIPH--GDPQSLDPPE--------------------------------VSNAKLQ-------  117 (723)
T ss_dssp             ESCCCCSSSCCCSEEEEEESSS--CCCEECCCTT--------------------------------CCSCCCS-------
T ss_pred             ecCccceeecceeeEEEEECCC--CceEeccCCc--------------------------------ccccccc-------
Confidence            765         4555543332  2111110000                                0000011       


Q ss_pred             cceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCC-Ce------------------EEEEEcCCCcEEEEEecC
Q 005459          220 MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSG-DA------------------VCASIAPEQQILAVGTRR  277 (696)
Q Consensus       220 ~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~-~~------------------v~v~~sp~~~~la~g~~d  277 (696)
                         .+.++|||+.++..+. +++.+|+...++..   ..+. ..                  ..++|||||+.||+++.|
T Consensus       118 ---~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~  193 (723)
T 1xfd_A          118 ---YAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN  193 (723)
T ss_dssp             ---BCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             ---ccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEEC
Confidence               1336677776666554 45666765543321   1111 11                  237788888877777654


Q ss_pred             C----------------------------------eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEE
Q 005459          278 G----------------------------------VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA  323 (696)
Q Consensus       278 g----------------------------------~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~la  323 (696)
                      +                                  +|++||+.+ ++....+....  ....|...+..++|||||+.|+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~-~~~~~~l~~~~--~~~~~~~~~~~~~~SpDg~~l~  270 (723)
T 1xfd_A          194 DSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG-PTHDLEMMPPD--DPRMREYYITMVKWATSTKVAV  270 (723)
T ss_dssp             CTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS-SCCCEECCCCC--CGGGSSEEEEEEEESSSSEEEE
T ss_pred             CCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC-CceeEEeeCCc--cCCCccceeEEEEEeCCCeEEE
Confidence            3                                  789999876 55444444310  0011367799999999999998


Q ss_pred             EEEcC----CcEEEEEccCCeeEEEeecccccce----ecccccCCCCCCccceecc--e---------eeEEEc-CCCc
Q 005459          324 VGWKS----RGLTVWSVSGCRLMSTIRQISLSSI----SSPIVKPNQDCKYEPLMSG--T---------SMMQWD-EYGY  383 (696)
Q Consensus       324 sg~~D----g~v~vW~~~~~~~~~~l~~~~~~~v----~~~~~sp~~~~~~~~l~sg--~---------~~~~W~-~~~~  383 (696)
                      +...+    ..|.+||+.++++...+..++...+    ..++|+|++    +.++..  .         .+..|+ ..++
T Consensus       271 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~~~~l~~~d~~~~~  346 (723)
T 1xfd_A          271 TWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDG----RKFFFIRAIPQGGRGKFYHITVSSSQPNS  346 (723)
T ss_dssp             EEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTS----CSEEEEEEECCSSSSCEEEEEEECSSCCS
T ss_pred             EEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCC----CeEEEEEecccCCCcceeEEEEEeccCCC
Confidence            77543    5799999999887766655433333    378999998    644422  1         366677 4554


Q ss_pred             e---EEEEecCCcce--EEEEec-ceeeeec-cCC--CCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec---C
Q 005459          384 R---LYAIEEGSSER--VLIFSF-GKCCLNR-GVS--GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS---Q  451 (696)
Q Consensus       384 ~---l~~~~~~~~~~--v~~~~~-~~~~~s~-~~d--~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~---~  451 (696)
                      +   ......++...  +..+++ ++.++.. ..+  +..++|.+......                  .+..+..   |
T Consensus       347 ~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~------------------~~~~l~~~~~~  408 (723)
T 1xfd_A          347 SNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF------------------NRQCLSCDLVE  408 (723)
T ss_dssp             SSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC------------------CCBCSSTTSSS
T ss_pred             CccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC------------------CcceecccccC
Confidence            4   32222232222  246777 7777544 444  77888987643320                  0112222   5


Q ss_pred             CCceEEEEEcCCCCEEEEEeCC
Q 005459          452 NWPVQHVAASKDGMFLAVAGLH  473 (696)
Q Consensus       452 ~~~I~~va~s~dG~~la~ag~d  473 (696)
                      ...+..++|||||+++|.....
T Consensus       409 ~~~~~~~~~spdg~~l~~~~~~  430 (723)
T 1xfd_A          409 NCTYFSASFSHSMDFFLLKCEG  430 (723)
T ss_dssp             SCCCCEEEECTTSSEEEEECCS
T ss_pred             CCCeEEEEECCCCCEEEEEccC
Confidence            6668899999999999876543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.77  E-value=3.9e-17  Score=176.86  Aligned_cols=224  Identities=15%  Similarity=0.094  Sum_probs=161.5

Q ss_pred             CCceeeeeeec--ceecCCCCeEE-EEEcCCCcEEEEEecCC---eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEE
Q 005459          240 KGLKLAEFIKI--DKELGSGDAVC-ASIAPEQQILAVGTRRG---VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI  313 (696)
Q Consensus       240 ~~~~~~~~~~~--~~~~~~~~~v~-v~~sp~~~~la~g~~dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l  313 (696)
                      +++++||....  ..+.+|...+. ++|||||+.||+++.|+   +|++||+.+ ++.. .+..        |.+.+.++
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t-g~~~-~l~~--------~~~~~~~~  228 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAVR-QVAS--------FPRHNGAP  228 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCEE-EEEC--------CSSCEEEE
T ss_pred             ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CcEE-Eeec--------CCCcccCE
Confidence            56778876532  22345676676 99999999999999885   999999987 5543 4555        78899999


Q ss_pred             EECCCCCeEE-EEEcCCc--EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce------eeEEEcCCCce
Q 005459          314 AWTPDNSAFA-VGWKSRG--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYR  384 (696)
Q Consensus       314 ~~spdg~~la-sg~~Dg~--v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~  384 (696)
                      +|||||+.|+ +++.|+.  |.+||+.++++ ..+..| ...+.+++|+|++    +.++.++      .+..|+..+++
T Consensus       229 ~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~spdg----~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          229 AFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG-RSNNTEPTWFPDS----QNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             EECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC-SSCEEEEEECTTS----SEEEEEECTTSSCEEEEEETTSSC
T ss_pred             EEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC-CCcccceEECCCC----CEEEEEECCCCCcEEEEEECCCCC
Confidence            9999999888 6666655  99999988765 566666 5678999999998    6665443      56778888877


Q ss_pred             EEEEecCCcceE--EEEec-ceeeeeccCC---CCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEE
Q 005459          385 LYAIEEGSSERV--LIFSF-GKCCLNRGVS---GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV  458 (696)
Q Consensus       385 l~~~~~~~~~~v--~~~~~-~~~~~s~~~d---~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v  458 (696)
                      .... ..+...+  ..+++ ++.++.++.+   ..+.+|++..++.                     ..+..+. .+.++
T Consensus       303 ~~~l-~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---------------------~~l~~~~-~~~~~  359 (415)
T 2hqs_A          303 PQRI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---------------------QVLSSTF-LDETP  359 (415)
T ss_dssp             CEEC-CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---------------------EECCCSS-SCEEE
T ss_pred             EEEE-ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE---------------------EEecCCC-CcCCe
Confidence            5432 3344455  56666 7878776654   4677777654433                     1223343 78999


Q ss_pred             EEcCCCCEEEEEeCCc---cE-EEEccCCceEecCCccceeeeEEEeEeeeC
Q 005459          459 AASKDGMFLAVAGLHG---LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG  506 (696)
Q Consensus       459 a~s~dG~~la~ag~dG---~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~  506 (696)
                      +|+|||++|++++.++   .+ +||+.+++.+.+..    ..-.|..++|.+
T Consensus       360 ~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~----~~~~v~~~~~~~  407 (415)
T 2hqs_A          360 SLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA----TDGQVKFPAWSP  407 (415)
T ss_dssp             EECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC----SSSEEEEEEECC
T ss_pred             EEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeC----CCCCCcCCcccc
Confidence            9999999999999887   67 99998776655432    122367777764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.74  E-value=3.5e-16  Score=181.30  Aligned_cols=229  Identities=13%  Similarity=0.077  Sum_probs=151.4

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeee-----ccee---cCCCCe--------------EE-EEEcCCCcEEEEEe-----
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIK-----IDKE---LGSGDA--------------VC-ASIAPEQQILAVGT-----  275 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~-----~~~~---~~~~~~--------------v~-v~~sp~~~~la~g~-----  275 (696)
                      +.++|||+.++.. .++.+.+|+...     ++..   ..+...              +. ++|||||+.||+++     
T Consensus       126 ~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~  204 (706)
T 2z3z_A          126 LDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSM  204 (706)
T ss_dssp             CEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTT
T ss_pred             CcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCC
Confidence            3478999888874 678899999876     5432   222221              24 99999999999998     


Q ss_pred             ----------------------------cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459          276 ----------------------------RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK  327 (696)
Q Consensus       276 ----------------------------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~  327 (696)
                                                  .++.|++||+++ ++.......      ..|...+.+++|||||+.|++++.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~-~~~~~~~~~------~~~~~~~~~~~~spdg~~l~~~~~  277 (706)
T 2z3z_A          205 VKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT-GKTVYLQTG------EPKEKFLTNLSWSPDENILYVAEV  277 (706)
T ss_dssp             SCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT-TEEEECCCC------SCTTCEEEEEEECTTSSEEEEEEE
T ss_pred             CceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC-CceEeeccC------CCCceeEeeEEEECCCCEEEEEEe
Confidence                                        447899999986 443322211      126778999999999999999888


Q ss_pred             CC-----cEEEEEccCCeeEEEee-ccccc---ceecccccC--CCCCCccceecce---eeEEEcCC-CceEEEEecCC
Q 005459          328 SR-----GLTVWSVSGCRLMSTIR-QISLS---SISSPIVKP--NQDCKYEPLMSGT---SMMQWDEY-GYRLYAIEEGS  392 (696)
Q Consensus       328 Dg-----~v~vW~~~~~~~~~~l~-~~~~~---~v~~~~~sp--~~~~~~~~l~sg~---~~~~W~~~-~~~l~~~~~~~  392 (696)
                      |+     .|.+||+.+++....+. ..+..   .+.+++|+|  ++    +.++++.   ...+|..+ .++.+..+..+
T Consensus       278 ~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg----~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~  353 (706)
T 2z3z_A          278 NRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNN----QFIWQSRRDGWNHLYLYDTTGRLIRQVTKG  353 (706)
T ss_dssp             CTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSS----EEEEEECTTSSCEEEEEETTSCEEEECCCS
T ss_pred             CCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCC----EEEEEEccCCccEEEEEECCCCEEEecCCC
Confidence            76     89999999883333332 22122   246789999  88    6666553   56677654 44455555555


Q ss_pred             cceE---EEEec-ceeee-eccCCC--CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCC
Q 005459          393 SERV---LIFSF-GKCCL-NRGVSG--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM  465 (696)
Q Consensus       393 ~~~v---~~~~~-~~~~~-s~~~d~--~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~  465 (696)
                      ...+   ..+++ ++.++ +++.++  ...+|.+......                   +. ...|...+.+++|||||+
T Consensus       354 ~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-------------------~~-~l~~~~~~~~~~~spdg~  413 (706)
T 2z3z_A          354 EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-------------------TK-DLTPESGMHRTQLSPDGS  413 (706)
T ss_dssp             SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-------------------CE-ESCCSSSEEEEEECTTSS
T ss_pred             CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-------------------ce-eccCCCceEEEEECCCCC
Confidence            5444   46676 65554 444444  3455554322211                   11 123556789999999999


Q ss_pred             EEEEEeCC----ccE-EEEccCCc
Q 005459          466 FLAVAGLH----GLI-LYDIRQKK  484 (696)
Q Consensus       466 ~la~ag~d----G~i-~w~~~sg~  484 (696)
                      +++.++.+    +.+ +||+.+++
T Consensus       414 ~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          414 AIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EEEEEecCCCCCcEEEEEECCCCe
Confidence            99887554    457 99999887

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.74  E-value=5.5e-16  Score=157.80  Aligned_cols=245  Identities=10%  Similarity=0.049  Sum_probs=161.2

Q ss_pred             cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe-cCcccccCCCCCCCceeee
Q 005459           39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI-TEKSIQIGGKQPSGLFFIK  117 (696)
Q Consensus        39 ~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~-~~~~~~~~~~~~~~~~~~~  117 (696)
                      +++|.+|+.. .+... .+..      +.+.+.+++|+|||++|+++. ++.|++|++.. +........+..       
T Consensus        21 ~~~i~~~d~~-~~~~~-~~~~------~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~-------   84 (297)
T 2ojh_A           21 RSSIEIFNIR-TRKMR-VVWQ------TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFAT-------   84 (297)
T ss_dssp             CEEEEEEETT-TTEEE-EEEE------ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCC-------
T ss_pred             ceeEEEEeCC-CCcee-eecc------CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccc-------
Confidence            5689999986 43322 2211      246678999999999999976 78999999976 432211111100       


Q ss_pred             eeEEEeeeccccccceeEEEeeeCCCeEEEEe--cCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccC
Q 005459          118 ISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL--SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT  195 (696)
Q Consensus       118 ~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t--~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~  195 (696)
                                   ....-.+++++++.++++.  .++...++.++........                           
T Consensus        85 -------------~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~---------------------------  124 (297)
T 2ojh_A           85 -------------ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL---------------------------  124 (297)
T ss_dssp             -------------CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE---------------------------
T ss_pred             -------------ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE---------------------------
Confidence                         0001125677888888888  3345555555432211110                           


Q ss_pred             CCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEE-EeeccCCceeeeeee--cc--eecCCCCeEE-EEEcCCCc
Q 005459          196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMS-CSVSKKGLKLAEFIK--ID--KELGSGDAVC-ASIAPEQQ  269 (696)
Q Consensus       196 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~-~~~~d~~~~~~~~~~--~~--~~~~~~~~v~-v~~sp~~~  269 (696)
                              +.. ...+..          +.++|||+.++ ++..++.+++|+...  .+  .+..+...+. ++|+|+++
T Consensus       125 --------~~~-~~~~~~----------~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  185 (297)
T 2ojh_A          125 --------MTK-NLPSYW----------HGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGR  185 (297)
T ss_dssp             --------CCS-SSSEEE----------EEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSS
T ss_pred             --------eec-CCCccc----------eEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCC
Confidence                    000 111333          34788898766 566778888888542  21  2244555555 99999999


Q ss_pred             EEEEEe-cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC-----------CcEEEEEcc
Q 005459          270 ILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-----------RGLTVWSVS  337 (696)
Q Consensus       270 ~la~g~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D-----------g~v~vW~~~  337 (696)
                      .|++++ .|+.+++|+++..+.....+..        |...+.+++|+|||+.|++++.+           +.|.+||+.
T Consensus       186 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~  257 (297)
T 2ojh_A          186 WIYFNSSRTGQMQIWRVRVDGSSVERITD--------SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMD  257 (297)
T ss_dssp             EEEEEECTTSSCEEEEEETTSSCEEECCC--------CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred             EEEEEecCCCCccEEEECCCCCCcEEEec--------CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecC
Confidence            888776 5999999999743555666665        77889999999999999998876           469999998


Q ss_pred             CCee--EEEeecccccceecccccCCCCCCccceec
Q 005459          338 GCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMS  371 (696)
Q Consensus       338 ~~~~--~~~l~~~~~~~v~~~~~sp~~~~~~~~l~s  371 (696)
                      +++.  +..+.+| ...+..++|+|++    +.++.
T Consensus       258 ~~~~~~~~~~~~~-~~~~~~~~~spdg----~~l~~  288 (297)
T 2ojh_A          258 GGNVETLFDLFGG-QGTMNSPNWSPDG----DEFAY  288 (297)
T ss_dssp             SCSCEEEEEEEES-TTTSCSCCBCTTS----SEEEE
T ss_pred             CCCceeeeccCCC-CcccccceECCCC----CEEEE
Confidence            8765  3344455 5668899999998    65553

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.74  E-value=1.6e-15  Score=158.20  Aligned_cols=235  Identities=14%  Similarity=0.103  Sum_probs=140.9

Q ss_pred             EEEcCCCcE-EEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEec-
Q 005459           73 AVWSPDTKL-IAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-  150 (696)
Q Consensus        73 v~wsPDg~~-lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~-  150 (696)
                      +.|.+++++ +++...++.|.+||+++++.....                 .    ...... -.+++++++.++++.. 
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~-----------------~----~~~~~~-~~~~s~dg~~l~~~~~~   60 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQI-----------------T----LGYDFV-DTAITSDCSNVVVTSDF   60 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-----------------E----CCCCEE-EEEECSSSCEEEEEEST
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeE-----------------E----ccCCcc-eEEEcCCCCEEEEEeCC
Confidence            567777776 666778899999998654321110                 0    111112 3466778887877766 


Q ss_pred             CCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCC
Q 005459          151 DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNG  230 (696)
Q Consensus       151 ~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG  230 (696)
                      ++.|.+++.+.....                                             +..+.........++++|||
T Consensus        61 ~~~i~~~d~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~s~dg   95 (331)
T 3u4y_A           61 CQTLVQIETQLEPPK---------------------------------------------VVAIQEGQSSMADVDITPDD   95 (331)
T ss_dssp             TCEEEEEECSSSSCE---------------------------------------------EEEEEECSSCCCCEEECTTS
T ss_pred             CCeEEEEECCCCcee---------------------------------------------EEecccCCCCccceEECCCC
Confidence            677877654322110                                             00111111111114578999


Q ss_pred             cEEEEeeccC---Cceeeeeeeccee---cCCCCeEEEEEcCCCcEEE-EEecCCe-EEEEEccCCCceeeEEeeccCCC
Q 005459          231 QLMSCSVSKK---GLKLAEFIKIDKE---LGSGDAVCASIAPEQQILA-VGTRRGV-VELYDLAESASLIRTVSLYDWGY  302 (696)
Q Consensus       231 ~~~~~~~~d~---~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la-~g~~dg~-v~vw~~~~~~~~~~~~~~~~~~~  302 (696)
                      +.+++...++   .+.+|+...++..   ..+..+..++|+|+|+.|+ ++..++. |.+|+++..+..... .....  
T Consensus        96 ~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~-~~~~~--  172 (331)
T 3u4y_A           96 QFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT-GQEFI--  172 (331)
T ss_dssp             SEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE-EEEEE--
T ss_pred             CEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec-CCccc--
Confidence            9888544442   7899998665433   3344555699999998555 4455688 999999863333211 11000  


Q ss_pred             CCCCCCCeEEEEECCCCCeEEEE-EcCCcEEEEEccCCee---EEEeecccccceecccccCCCCCCcccee-cce---e
Q 005459          303 SMDDTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDCKYEPLM-SGT---S  374 (696)
Q Consensus       303 ~~~h~g~V~~l~~spdg~~lasg-~~Dg~v~vW~~~~~~~---~~~l~~~~~~~v~~~~~sp~~~~~~~~l~-sg~---~  374 (696)
                        .+......++|+|||+.|+++ ..++.|.+||+.+++.   +.++..+  ..+..++|+|++    +.+. +..   .
T Consensus       173 --~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg----~~l~v~~~~~~~  244 (331)
T 3u4y_A          173 --SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDG----STVYVLTESTVD  244 (331)
T ss_dssp             --CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTS----SEEEEECSSEEE
T ss_pred             --cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC--CCCceEEECCCC----CEEEEEEcCCCE
Confidence              134558999999999966554 5688999999998887   7777654  456788899987    5332 211   5


Q ss_pred             eEEEcCCCceE
Q 005459          375 MMQWDEYGYRL  385 (696)
Q Consensus       375 ~~~W~~~~~~l  385 (696)
                      +.+|+.+++++
T Consensus       245 i~~~d~~~~~~  255 (331)
T 3u4y_A          245 VFNFNQLSGTL  255 (331)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEECCCCce
Confidence            55666665544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.73  E-value=6e-16  Score=180.30  Aligned_cols=264  Identities=12%  Similarity=0.079  Sum_probs=179.7

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeec---ce--ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKI---DK--ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL  297 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~---~~--~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~  297 (696)
                      ++++|||+.+++++. +++.+|+...+   +.  +..|...+. ++|||||+.||+++ ++.|++||+++ ++..+....
T Consensus       114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~-g~~~~~~~~  190 (741)
T 2ecf_A          114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS-GRQMQLTAD  190 (741)
T ss_dssp             CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT-TEEEECCCC
T ss_pred             eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC-CCEEEeccC
Confidence            568999999888776 78999998765   32  345655666 99999999999987 56999999986 444332222


Q ss_pred             ccCCCCCCCCC----------------CeEEEEECCCCCeEEEEEcCC--------------------------------
Q 005459          298 YDWGYSMDDTG----------------PVSCIAWTPDNSAFAVGWKSR--------------------------------  329 (696)
Q Consensus       298 ~~~~~~~~h~g----------------~V~~l~~spdg~~lasg~~Dg--------------------------------  329 (696)
                              +..                .+..++|||||+.|++++.|+                                
T Consensus       191 --------~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~  262 (741)
T 2ecf_A          191 --------GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ  262 (741)
T ss_dssp             --------CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred             --------CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence                    222                247899999999999998876                                


Q ss_pred             -cEEEEEccC-CeeEEEeec-ccccceecccccCCCCCCccceecc--------eeeEEEcCCCceEEEEecCCcc----
Q 005459          330 -GLTVWSVSG-CRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSG--------TSMMQWDEYGYRLYAIEEGSSE----  394 (696)
Q Consensus       330 -~v~vW~~~~-~~~~~~l~~-~~~~~v~~~~~sp~~~~~~~~l~sg--------~~~~~W~~~~~~l~~~~~~~~~----  394 (696)
                       .|.+||+.+ ++....... .+...+..++| ||+    +.++.+        ..+.+|+..++++......+..    
T Consensus       263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg----~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~  337 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP----QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP  337 (741)
T ss_dssp             EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET----TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred             eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC----CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence             789999988 765544322 22567899999 998    666532        2688999998887766554332    


Q ss_pred             e--EEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEE-EEcCCCCEEEEE
Q 005459          395 R--VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV-AASKDGMFLAVA  470 (696)
Q Consensus       395 ~--v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v-a~s~dG~~la~a  470 (696)
                      .  -..|++ ++.+++++.|+..++|.+.....                    +..+..|.+.|..+ +|||||++|+..
T Consensus       338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~--------------------~~~l~~~~~~v~~~~~~s~dg~~l~~~  397 (741)
T 2ecf_A          338 LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK--------------------AAALTHGNWSVDELLAVDEKAGLAYFR  397 (741)
T ss_dssp             CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC--------------------EEESCCSSSCEEEEEEEETTTTEEEEE
T ss_pred             cCCceEECCCCeEEEEecCCCccEEEEEcCCCC--------------------eeeeeecceEEEeEeEEeCCCCEEEEE
Confidence            1  256777 77788888898888887652221                    12445677888887 599999987654


Q ss_pred             -eCCc--cE-EEEccC-Cc-eEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459          471 -GLHG--LI-LYDIRQ-KK-WRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       471 -g~dG--~i-~w~~~s-g~-w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                       +.++  .+ +|++.. ++ -+.+..   ..  .+..+.|.  ++.++..+.. ...-.++.+|+.+
T Consensus       398 ~~~~~~~~~~l~~~~~~g~~~~~l~~---~~--~~~~~~~spdg~~l~~~~~~-~~~p~~~~l~~~~  458 (741)
T 2ecf_A          398 AGIESARESQIYAVPLQGGQPQRLSK---AP--GMHSASFARNASVYVDSWSN-NSTPPQIELFRAN  458 (741)
T ss_dssp             ECSSCTTCBEEEEEETTCCCCEECCC---SC--SEEEEEECTTSSEEEEEEEE-TTEEEEEEEEETT
T ss_pred             EeCCCCceEEEEEEEcCCCCeeeccc---CC--CceEEEECCCCCEEEEEecC-CCCCCeEEEEEcC
Confidence             4454  77 998864 32 222221   11  13456675  4566655332 3344577777653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.72  E-value=1.4e-16  Score=173.43  Aligned_cols=208  Identities=13%  Similarity=0.109  Sum_probs=135.3

Q ss_pred             EEEEcCCCcEEEEEecCCeEEEEEccCCCc------eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEE----EEEcCCc
Q 005459          261 CASIAPEQQILAVGTRRGVVELYDLAESAS------LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA----VGWKSRG  330 (696)
Q Consensus       261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~------~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~la----sg~~Dg~  330 (696)
                      ++++++++.++|+|+.|| +++|+......      ....+..........|.+.|.+++|+|||++||    +|+.|++
T Consensus        41 ~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~  119 (434)
T 2oit_A           41 LLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSI  119 (434)
T ss_dssp             CEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEE
T ss_pred             EEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCce
Confidence            499999999999999998 89988653100      000000000000112677899999999999999    7888999


Q ss_pred             EEEEEccCCe--------e---EEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEE
Q 005459          331 LTVWSVSGCR--------L---MSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIF  399 (696)
Q Consensus       331 v~vW~~~~~~--------~---~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~  399 (696)
                      |++||+.+..        .   +..+.+| ...|.+++|+|+.                                     
T Consensus       120 v~iwd~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~-------------------------------------  161 (434)
T 2oit_A          120 IAFFDVRTFSNEAKQQKRPFAYHKLLKDA-GGMVIDMKWNPTV-------------------------------------  161 (434)
T ss_dssp             EEEEEHHHHHCTTCSSCCCSEEEECCCSG-GGSEEEEEECSSC-------------------------------------
T ss_pred             EEEEEccccccCCcCCcceeeeeeccCCC-CCceEEEEECCCC-------------------------------------
Confidence            9999987541        1   1222222 2233333333331                                     


Q ss_pred             ecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EE
Q 005459          400 SFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY  478 (696)
Q Consensus       400 ~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w  478 (696)
                        ++.+++++.|+++++||+..+..                    .....+|..+|++++|+|||++||+|+.||.+ +|
T Consensus       162 --~~~las~s~Dg~v~iwD~~~~~~--------------------~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iw  219 (434)
T 2oit_A          162 --PSMVAVCLADGSIAVLQVTETVK--------------------VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQY  219 (434)
T ss_dssp             --TTEEEEEETTSCEEEEEESSSEE--------------------EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             --CCEEEEEECCCeEEEEEcCCCcc--------------------eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEE
Confidence              24567888899999999876532                    23345678899999999999999999999999 99


Q ss_pred             EccCCceEecCCcc---ceeeeEEEeEeeeCcEEEEEEeecCC----CeEEEEEeeCC
Q 005459          479 DIRQKKWRVFGDIT---QEQKIQSKGLLWLGKIIVVCNYIDSS----NTYELLFYPRY  529 (696)
Q Consensus       479 ~~~sg~w~~f~~~~---~e~~~~v~~~~w~~~~lv~~~~~~~~----~~~~lr~y~~~  529 (696)
                      |++...-+.+....   .++...|..+.|.++..+++++...+    ....+++|...
T Consensus       220 d~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~  277 (434)
T 2oit_A          220 LPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP  277 (434)
T ss_dssp             CTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred             ccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence            99833223222111   12234688999987655554443222    23468899865

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.71  E-value=8.3e-16  Score=174.05  Aligned_cols=252  Identities=15%  Similarity=0.075  Sum_probs=166.1

Q ss_pred             CceEEEEEeCCcEEEEEc--cCeEEEeecCCceeeEEEeecChHHHhhc-ccccEEEEcCCCcEEEEEec---CcEEEEE
Q 005459           21 SQQIIYFKVNNGLLLIAS--PCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKLIAVVTS---SLYLHIF   94 (696)
Q Consensus        21 ~~~~v~fs~dg~lla~~~--~~~v~iW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wsPDg~~lav~t~---dg~l~l~   94 (696)
                      +...+.|||||+.||.++  ++++.||++. .+.. ..+..      .+ +.+..++|||| ++++++..   +...++|
T Consensus        23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~-~g~~-~~lt~------~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~   93 (582)
T 3o4h_A           23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYD-GGET-VKLNR------EPINSVLDPHYGVG-RVILVRDVSKGAEQHALF   93 (582)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEE-TTEE-EECCS------SCCSEECEECTTCS-EEEEEEECSTTSCCEEEE
T ss_pred             chheeecCCCCCeEEEEEccCCceeEEEEc-CCCc-Eeeec------ccccccccccCCCC-eEEEEeccCCCCcceEEE
Confidence            455688999999999874  6799999984 3322 22211      22 35678999999 77777765   4567888


Q ss_pred             EEEe--cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEE-EEecCCcEEEEecCCccccceeecc
Q 005459           95 KVQI--TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML-LGLSDGSLYSISWKGEFYGAFELVH  171 (696)
Q Consensus        95 ~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~ll-v~t~~g~i~~~~w~~~~~~~~~~~~  171 (696)
                      .+..  .......                      .......+.+++++++.++ +...++.+.+|+.+  .....    
T Consensus        94 ~~~~~~~g~~~~l----------------------~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~--~g~~~----  145 (582)
T 3o4h_A           94 KVNTSRPGEEQRL----------------------EAVKPMRILSGVDTGEAVVFTGATEDRVALYALD--GGGLR----  145 (582)
T ss_dssp             EEETTSTTCCEEC----------------------TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEE--TTEEE----
T ss_pred             EEeccCCCccccc----------------------cCCCCceeeeeCCCCCeEEEEecCCCCceEEEcc--CCcEE----
Confidence            8875  2211100                      0011112457888887644 44445555554322  11111    


Q ss_pred             CCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeecc----CCceeeee
Q 005459          172 SSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK----KGLKLAEF  247 (696)
Q Consensus       172 ~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d----~~~~~~~~  247 (696)
                                                               .+.-.+.  ....++|||+.++.++.+    .++.+||.
T Consensus       146 -----------------------------------------~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~  182 (582)
T 3o4h_A          146 -----------------------------------------ELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNL  182 (582)
T ss_dssp             -----------------------------------------EEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEET
T ss_pred             -----------------------------------------EeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcC
Confidence                                                     0001111  346689999999987766    66888886


Q ss_pred             eecc--eecCCCCeEE-EEEcCCCcEEEEEecCC--eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEE--------
Q 005459          248 IKID--KELGSGDAVC-ASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIA--------  314 (696)
Q Consensus       248 ~~~~--~~~~~~~~v~-v~~sp~~~~la~g~~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~--------  314 (696)
                      ..++  .+.+|...+. ++|||||+.||++..+|  +|++||+++ ++.. .+..        |.+.+..++        
T Consensus       183 ~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~--------~~~~~~~~~~~~~~~~~  252 (582)
T 3o4h_A          183 SSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD-GSVE-DLEL--------PSKDFSSYRPTAITWLG  252 (582)
T ss_dssp             TTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT-CCEE-ECCC--------SCSHHHHHCCSEEEEEE
T ss_pred             CCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC-CcEE-EccC--------CCcChhhhhhcccccee
Confidence            5543  3456777676 99999999999888899  899999987 5544 5555        777777777        


Q ss_pred             ECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459          315 WTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT  373 (696)
Q Consensus       315 ~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~  373 (696)
                      |||||+.+++++.|+++++|++  +++..++    ...+.+++|+ ++    +.+++++
T Consensus       253 ~spdg~~~~~~~~~g~~~l~~~--g~~~~~~----~~~v~~~~~s-dg----~~l~~~s  300 (582)
T 3o4h_A          253 YLPDGRLAVVARREGRSAVFID--GERVEAP----QGNHGRVVLW-RG----KLVTSHT  300 (582)
T ss_dssp             ECTTSCEEEEEEETTEEEEEET--TEEECCC----SSEEEEEEEE-TT----EEEEEEE
T ss_pred             EcCCCcEEEEEEcCCcEEEEEE--CCeeccC----CCceEEEEec-CC----EEEEEEc
Confidence            9999999999999999999999  5544322    2457778888 66    5555443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.71  E-value=6e-17  Score=188.19  Aligned_cols=297  Identities=9%  Similarity=0.040  Sum_probs=183.7

Q ss_pred             eEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCC---CeEEEEECCCCCeEEEEEcC-------
Q 005459          259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG---PVSCIAWTPDNSAFAVGWKS-------  328 (696)
Q Consensus       259 ~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g---~V~~l~~spdg~~lasg~~D-------  328 (696)
                      ...++|+|||+++++ +.||+|++||+.+ ++....+..        |..   .|.+++|||||++||+++.+       
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~-g~~~~~~~~--------~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~   88 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVET-NTSTVLIEG--------KKIESLRAIRYEISPDREYALFSYNVEPIYQHS   88 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGG-CCCEEEECT--------TTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCC-CcEEEEecc--------ccccccccceEEECCCCCEEEEEecCccceeec
Confidence            344899999998877 7899999999988 666666655        554   49999999999999999875       


Q ss_pred             --CcEEEEEccCCeeEEEeecc--cccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEecCCcc--------
Q 005459          329 --RGLTVWSVSGCRLMSTIRQI--SLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSE--------  394 (696)
Q Consensus       329 --g~v~vW~~~~~~~~~~l~~~--~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~--------  394 (696)
                        +.+.+||+.++++ ..+...  +...+..++||||+    +.++.++  .+.+|+..+++.......+..        
T Consensus        89 ~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG----~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~  163 (723)
T 1xfd_A           89 YTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKG----QQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLS  163 (723)
T ss_dssp             CCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSST----TCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEEC
T ss_pred             ceeeEEEEECCCCce-EeccCCccccccccccEECCCC----CEEEEEECCeEEEEECCCCceEEEecCCCCCceECccc
Confidence              6788999998875 334322  13348899999999    7777665  899999998877666554332        


Q ss_pred             ------------eEEEEec-ceeeeeccCCC-CceeeeeeecCC---------------------eEEEEecCCCCccee
Q 005459          395 ------------RVLIFSF-GKCCLNRGVSG-MTYARQVIYGED---------------------RLLVVQSEDTDELKI  439 (696)
Q Consensus       395 ------------~v~~~~~-~~~~~s~~~d~-~~~~w~~~~~~~---------------------~~~~~~~~~~~~~~w  439 (696)
                                  .-..+++ ++.+++++.+. .+.+|.+.....                     .+++.......  ..
T Consensus       164 ~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~--~~  241 (723)
T 1xfd_A          164 DWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT--HD  241 (723)
T ss_dssp             CHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC--CC
T ss_pred             ceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc--ee
Confidence                        2367777 88888776553 455555421111                     11111110000  00


Q ss_pred             EEeecCeeeecCCCceEEEEEcCCCCEEEEEeCC----ccE-EEEccCCceEecCCccceeeeE--EEeEeeeC--cEEE
Q 005459          440 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH----GLI-LYDIRQKKWRVFGDITQEQKIQ--SKGLLWLG--KIIV  510 (696)
Q Consensus       440 ~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~d----G~i-~w~~~sg~w~~f~~~~~e~~~~--v~~~~w~~--~~lv  510 (696)
                      ..+..+.....+...+..++|||||+++++...+    +.+ +||+.+++.+.......+....  ...+.|.+  +.|+
T Consensus       242 ~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  321 (723)
T 1xfd_A          242 LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFF  321 (723)
T ss_dssp             EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEE
T ss_pred             EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEE
Confidence            1111111222346679999999999999877543    467 9999998755432111111111  12577863  4455


Q ss_pred             EEEeecCCC----eEEEEEee-CC-CCC--ccceeE-EeecCCccEEEEccCCEEEEEEcC---ceEEEEEEEEec
Q 005459          511 VCNYIDSSN----TYELLFYP-RY-HLD--QSSLLC-RKSLLAKPIVMDVYEDYILVTYRP---FDVHIFHVKLFG  574 (696)
Q Consensus       511 ~~~~~~~~~----~~~lr~y~-~~-~l~--~~~~~~-~~~~~~~~l~~~~~~~~llv~~~d---~~~~l~~~~~~~  574 (696)
                      .+... .++    ...|.+|+ .. ...  ...+.. ...+. ..+.++++++.|++.+.+   +.++||.+...+
T Consensus       322 ~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~-~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~  395 (723)
T 1xfd_A          322 FIRAI-PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT-KILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG  395 (723)
T ss_dssp             EEEEE-CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE-EEEEEETTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred             EEEec-ccCCCcceeEEEEEeccCCCCccceeEeecCCeEEE-eeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence            43122 222    45778887 33 110  111110 01111 125788999998875554   789999987654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.71  E-value=2.7e-15  Score=157.80  Aligned_cols=243  Identities=15%  Similarity=0.143  Sum_probs=151.1

Q ss_pred             EEEEeCCcEEEEeec--cCCceeeeeeecc--ee---cCCCC-eEEEEEcCCCcEEEEEe-cCCeEEEEEccCCCce--e
Q 005459          224 FVLYSNGQLMSCSVS--KKGLKLAEFIKID--KE---LGSGD-AVCASIAPEQQILAVGT-RRGVVELYDLAESASL--I  292 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~--d~~~~~~~~~~~~--~~---~~~~~-~v~v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~--~  292 (696)
                      ++++|||+++++...  ++.+.+|+...++  .+   ..+.. +..++|+||+++|++++ .+++|++|+++..+..  +
T Consensus        45 ~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~  124 (347)
T 3hfq_A           45 LALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLT  124 (347)
T ss_dssp             EEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred             EEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeec
Confidence            568899995444433  5788899885443  11   12333 34499999999888888 7899999999742332  2


Q ss_pred             eEEeeccC-CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc-CCeeEE--EeecccccceecccccCCCCCCccc
Q 005459          293 RTVSLYDW-GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMS--TIRQISLSSISSPIVKPNQDCKYEP  368 (696)
Q Consensus       293 ~~~~~~~~-~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~-~~~~~~--~l~~~~~~~v~~~~~sp~~~~~~~~  368 (696)
                      ..+..... +....+...+.+++|+|||+.+++...++.|.+|++. ++++..  .+..........++|+|++    +.
T Consensus       125 ~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg----~~  200 (347)
T 3hfq_A          125 DTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDG----QY  200 (347)
T ss_dssp             EEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTS----SE
T ss_pred             ceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCC----CE
Confidence            22221000 0001123358899999999966666778899999998 554322  2222212346678999998    64


Q ss_pred             eec-ce---eeEEEcCC--CceEEE--EecCCc------ceE--EEEec-ceee-eeccCCCCceeeeeeecCCeEEEEe
Q 005459          369 LMS-GT---SMMQWDEY--GYRLYA--IEEGSS------ERV--LIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQ  430 (696)
Q Consensus       369 l~s-g~---~~~~W~~~--~~~l~~--~~~~~~------~~v--~~~~~-~~~~-~s~~~d~~~~~w~~~~~~~~~~~~~  430 (696)
                      ++. +.   .+.+|+.+  ++++..  ......      ..+  ++|++ ++.+ ++...++.+.+|++......     
T Consensus       201 l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~-----  275 (347)
T 3hfq_A          201 AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHL-----  275 (347)
T ss_dssp             EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCE-----
T ss_pred             EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcE-----
Confidence            432 22   67788765  355422  221111      223  66777 7766 55566888999987533210     


Q ss_pred             cCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCC-ccE-EE--EccCCceEe
Q 005459          431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH-GLI-LY--DIRQKKWRV  487 (696)
Q Consensus       431 ~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~d-G~i-~w--~~~sg~w~~  487 (696)
                                  +....+..+...++.++|||||++|++++.+ +.+ +|  |..+|+.+.
T Consensus       276 ------------~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          276 ------------TLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             ------------EEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             ------------EEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence                        0122333445557899999999999998875 788 99  556676543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.70  E-value=1.4e-15  Score=172.09  Aligned_cols=186  Identities=11%  Similarity=-0.023  Sum_probs=123.1

Q ss_pred             EEEeCCcE-EEEeeccCCceeeeeeeccee--cCCCCeEEEEEcCCCcEEEEEecC----CeEEEEEccCCCceeeEEee
Q 005459          225 VLYSNGQL-MSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRR----GVVELYDLAESASLIRTVSL  297 (696)
Q Consensus       225 ~~s~dG~~-~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~v~~sp~~~~la~g~~d----g~v~vw~~~~~~~~~~~~~~  297 (696)
                      .+++||+. +++...+....+|+...++..  ..+.. ..++|||||++||+++.|    ++|++||+++ ++ .+.+..
T Consensus       116 ~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~-g~-~~~l~~  192 (582)
T 3o4h_A          116 SGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS-GG-LRVFDS  192 (582)
T ss_dssp             EEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-CC-CEEECC
T ss_pred             eeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-CC-ceEeec
Confidence            47788863 344444455568988765432  22222 458999999999998887    7899999876 44 345666


Q ss_pred             ccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC--cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceee
Q 005459          298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSM  375 (696)
Q Consensus       298 ~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg--~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~  375 (696)
                              |.+.+..++|||||+.|+++..|+  .|.+||+.+++.. .+.++ ...+..++            ..+...
T Consensus       193 --------~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~-~~~~~~~~------------~~~~~~  250 (582)
T 3o4h_A          193 --------GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP-SKDFSSYR------------PTAITW  250 (582)
T ss_dssp             --------SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS-CSHHHHHC------------CSEEEE
T ss_pred             --------CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC-CcChhhhh------------hccccc
Confidence                    888999999999999999888888  8999999988766 55554 33344444            000011


Q ss_pred             EEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCce
Q 005459          376 MQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV  455 (696)
Q Consensus       376 ~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I  455 (696)
                      ..|++++ +                   .+++++.++++++|++  ++.                    ..   .....|
T Consensus       251 ~~~spdg-~-------------------~~~~~~~~g~~~l~~~--g~~--------------------~~---~~~~~v  285 (582)
T 3o4h_A          251 LGYLPDG-R-------------------LAVVARREGRSAVFID--GER--------------------VE---APQGNH  285 (582)
T ss_dssp             EEECTTS-C-------------------EEEEEEETTEEEEEET--TEE--------------------EC---CCSSEE
T ss_pred             eeEcCCC-c-------------------EEEEEEcCCcEEEEEE--CCe--------------------ec---cCCCce
Confidence            1233322 2                   2334455667777776  221                    00   122458


Q ss_pred             EEEEEcCCCCEEEEEeCCccE--EEEcc
Q 005459          456 QHVAASKDGMFLAVAGLHGLI--LYDIR  481 (696)
Q Consensus       456 ~~va~s~dG~~la~ag~dG~i--~w~~~  481 (696)
                      .+++|| ||+++++++.+...  +|...
T Consensus       286 ~~~~~s-dg~~l~~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          286 GRVVLW-RGKLVTSHTSLSTPPRIVSLP  312 (582)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred             EEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence            899999 99999999988664  55444

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.70  E-value=9e-15  Score=152.68  Aligned_cols=295  Identities=9%  Similarity=0.079  Sum_probs=183.2

Q ss_pred             CcEEEEEecCCeEEEEEccCCCceee-EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC-CcEEEEEcc--CCe--e
Q 005459          268 QQILAVGTRRGVVELYDLAESASLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVWSVS--GCR--L  341 (696)
Q Consensus       268 ~~~la~g~~dg~v~vw~~~~~~~~~~-~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D-g~v~vW~~~--~~~--~  341 (696)
                      ..++++++.|+.|++|+++..+.... ....        |.+.+.+++|+|||+.|++++.+ +.|++|++.  ++.  .
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~   76 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQVVD--------VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF   76 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--------CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeeeEe--------cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee
Confidence            34555558899999999974232211 1122        67789999999999999999887 999999997  444  3


Q ss_pred             EEEeecccccceecccccCCCCCCccceecce----eeEEEcC---CCceEEEEecCCcceE-EEEec-ceeeeecc-CC
Q 005459          342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDE---YGYRLYAIEEGSSERV-LIFSF-GKCCLNRG-VS  411 (696)
Q Consensus       342 ~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~---~~~~l~~~~~~~~~~v-~~~~~-~~~~~s~~-~d  411 (696)
                      +..+..+  ..+..++|+|++    +.++.+.    .+.+|+.   ...+.......+...- +++++ ++.+++++ .+
T Consensus        77 ~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  150 (343)
T 1ri6_A           77 AAESALP--GSLTHISTDHQG----QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ  150 (343)
T ss_dssp             EEEEECS--SCCSEEEECTTS----SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG
T ss_pred             ccccccC--CCCcEEEEcCCC----CEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCC
Confidence            4455544  267889999998    6554332    6889998   4445555554433222 66777 66666665 88


Q ss_pred             CCceeeeeee-cCCeEEEEecCCCCcceeEEeecCeeee-cCCCceEEEEEcCCCCEEEEEe-CCccE-EEEcc--CCce
Q 005459          412 GMTYARQVIY-GEDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDIR--QKKW  485 (696)
Q Consensus       412 ~~~~~w~~~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~I~~va~s~dG~~la~ag-~dG~i-~w~~~--sg~w  485 (696)
                      +.+.+|++.. +.... +.               +.... .....++.++|+|||+++++++ .++.+ +|++.  ++++
T Consensus       151 ~~v~~~d~~~~~~~~~-~~---------------~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~  214 (343)
T 1ri6_A          151 DRICLFTVSDDGHLVA-QD---------------PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI  214 (343)
T ss_dssp             TEEEEEEECTTSCEEE-EE---------------EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred             CEEEEEEecCCCceee-ec---------------ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence            9999999865 32210 00               00111 2234688999999999886665 78888 99994  4554


Q ss_pred             EecCCcc-----ceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCCC-CCccceeEEeecCC--ccEEEEccCCE
Q 005459          486 RVFGDIT-----QEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRYH-LDQSSLLCRKSLLA--KPIVMDVYEDY  555 (696)
Q Consensus       486 ~~f~~~~-----~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~~-l~~~~~~~~~~~~~--~~l~~~~~~~~  555 (696)
                      +......     ......+.+++|.+  +.+++++    ..+..|++|+.+. -.....+...+...  .-+.+++.+++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~----~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  290 (343)
T 1ri6_A          215 ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD----RTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKY  290 (343)
T ss_dssp             EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE----TTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSE
T ss_pred             EEEeeccccCccccccCCccceEECCCCCEEEEEe----cCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCE
Confidence            3221110     01112245788874  4666552    2346899998751 11111222222211  24788888999


Q ss_pred             EEEEE-cCceEEEEEEEEecccCCCCCCeeEeEEEEEEeecccCCCCceEEEec
Q 005459          556 ILVTY-RPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIP  608 (696)
Q Consensus       556 llv~~-~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  608 (696)
                      |++++ .++.+.+|.++.++       +  .+..+.++..   ...|.++...+
T Consensus       291 l~~~~~~~~~v~v~~~d~~~-------g--~~~~~~~~~~---g~~p~~i~~~~  332 (343)
T 1ri6_A          291 LIAAGQKSHHISVYEIVGEQ-------G--LLHEKGRYAV---GQGPMWVVVNA  332 (343)
T ss_dssp             EEEECTTTCEEEEEEEETTT-------T--EEEEEEEEEC---SSSCCEEEEEE
T ss_pred             EEEecCCCCeEEEEEEcCCC-------c--eeeEcccccc---CCCCeeEEEEc
Confidence            99876 57899999886421       1  3444555443   46788877654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.70  E-value=3.6e-15  Score=172.75  Aligned_cols=314  Identities=9%  Similarity=-0.007  Sum_probs=174.0

Q ss_pred             ceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe---
Q 005459           22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI---   98 (696)
Q Consensus        22 ~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~---   98 (696)
                      ..-++|||| +.++.+.+++|.+||.. .+... .+..      ..+.+..++|||||+.||.. .++.|.+|++..   
T Consensus        84 v~~~~~spd-~~~~~~~~~~i~~~d~~-~~~~~-~l~~------~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~  153 (706)
T 2z3z_A           84 SFRTLDAGR-GLVVLFTQGGLVGFDML-ARKVT-YLFD------TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGE  153 (706)
T ss_dssp             CEEEEETTT-TEEEEEETTEEEEEETT-TTEEE-EEEC------CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTS
T ss_pred             ceeEEECCC-CeEEEEECCEEEEEECC-CCceE-EccC------CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccc
Confidence            455889999 66666677999999995 43322 2221      12456789999999999995 789999999986   


Q ss_pred             --cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCC-c---EEEEecCCccccceeeccC
Q 005459           99 --TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG-S---LYSISWKGEFYGAFELVHS  172 (696)
Q Consensus        99 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g-~---i~~~~w~~~~~~~~~~~~~  172 (696)
                        +...........  ....... ..++.    .....-..+++|++.|+++..|. .   .......... ........
T Consensus       154 ~~g~~~~~~~~~~~--~~~~g~~-~~~ee----~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~-~~~~~~~y  225 (706)
T 2z3z_A          154 GMSRAIAVTIDGTE--TLVYGQA-VHQRE----FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLE-AESKPLYY  225 (706)
T ss_dssp             CCCCCEESCSCCBT--TEEESSC-CGGGC----TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSS-CEEEEECC
T ss_pred             cCCCcEEeccCCCC--CeEcccc-hhhhh----cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCC-CceEEeeC
Confidence              432211111000  0000000 00000    00012236788899888876331 1   1111111000 00000000


Q ss_pred             CCCCcccccccccCCCCcc-cccCCCccccCCc-CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccC-----Cceee
Q 005459          173 SNDSSVAALSHHFPSNGLA-SVDTSGAFVSDHK-FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK-----GLKLA  245 (696)
Q Consensus       173 p~~~~~~~~~~~s~~~~l~-~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~-----~~~~~  245 (696)
                      |.....      ..+.++. +-...+....... ..+...+..          +.++|||+.++++..+.     ++.+|
T Consensus       226 ~~~g~~------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~----------~~~spdg~~l~~~~~~~~~~~~~v~~~  289 (706)
T 2z3z_A          226 PMAGTP------SHHVTVGIYHLATGKTVYLQTGEPKEKFLTN----------LSWSPDENILYVAEVNRAQNECKVNAY  289 (706)
T ss_dssp             CBTTSC------CCEEEEEEEETTTTEEEECCCCSCTTCEEEE----------EEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred             CCCCCC------CCeeEEEEEECCCCceEeeccCCCCceeEee----------EEEECCCCEEEEEEeCCCCCeeEEEEE
Confidence            000000      0000000 0000000000000 112233444          45788998777766554     67788


Q ss_pred             eeeec-ce--ec--CCCC---eEE-EEEcC--CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEE-E
Q 005459          246 EFIKI-DK--EL--GSGD---AVC-ASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC-I  313 (696)
Q Consensus       246 ~~~~~-~~--~~--~~~~---~v~-v~~sp--~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~-l  313 (696)
                      |..++ +.  +.  .+..   .+. ++|+|  ||++|+++..||.++||.++..++.++.+..        |...|.. +
T Consensus       290 d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~--------~~~~v~~~~  361 (706)
T 2z3z_A          290 DAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK--------GEWEVTNFA  361 (706)
T ss_dssp             ETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC--------SSSCEEEEE
T ss_pred             ECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC--------CCeEEEeee
Confidence            87655 21  11  1111   123 79999  9999999999999999998843666666666        7777877 8


Q ss_pred             EECCCCCeEEEEEcC-C----cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce-------eeEEEcCC
Q 005459          314 AWTPDNSAFAVGWKS-R----GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEY  381 (696)
Q Consensus       314 ~~spdg~~lasg~~D-g----~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-------~~~~W~~~  381 (696)
                      +|+|||+.|+.++.+ +    .|..|++.++. ...+. + ...+.+++|+|++    +.++...       .+.+|+..
T Consensus       362 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~-~~~~~~~~~spdg----~~l~~~~~~~~~p~~i~l~d~~  434 (706)
T 2z3z_A          362 GFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-P-ESGMHRTQLSPDG----SAIIDIFQSPTVPRKVTVTNIG  434 (706)
T ss_dssp             EECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-C-SSSEEEEEECTTS----SEEEEEEECSSCSCEEEEEESS
T ss_pred             EEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-C-CCceEEEEECCCC----CEEEEEecCCCCCcEEEEEECC
Confidence            999999988766554 3    56666766665 33443 2 3458889999998    6655432       47889998


Q ss_pred             Cce
Q 005459          382 GYR  384 (696)
Q Consensus       382 ~~~  384 (696)
                      +++
T Consensus       435 ~~~  437 (706)
T 2z3z_A          435 KGS  437 (706)
T ss_dssp             SCE
T ss_pred             CCe
Confidence            877

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.70  E-value=5.7e-15  Score=154.16  Aligned_cols=267  Identities=13%  Similarity=0.150  Sum_probs=165.4

Q ss_pred             EEEEeeccCCceeeeeee-c--cee--cCCCCeEE-EEEcCCCcEEEEEecC-CeEEEEEccCC-Cce--eeEEeeccCC
Q 005459          232 LMSCSVSKKGLKLAEFIK-I--DKE--LGSGDAVC-ASIAPEQQILAVGTRR-GVVELYDLAES-ASL--IRTVSLYDWG  301 (696)
Q Consensus       232 ~~~~~~~d~~~~~~~~~~-~--~~~--~~~~~~v~-v~~sp~~~~la~g~~d-g~v~vw~~~~~-~~~--~~~~~~~~~~  301 (696)
                      ++++...++.+++|+... +  +..  ..+...+. ++|+|++++|++++.+ +.|++|+++.. +..  +..+..    
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----   82 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL----   82 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC----
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc----
Confidence            333335677888887741 1  111  23444444 9999999999998887 99999999821 332  233333    


Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEc---cCCeeEEEeecccccceecccccCCCCCCccceecce----
Q 005459          302 YSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSV---SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----  373 (696)
Q Consensus       302 ~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~---~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----  373 (696)
                           .+.+..++|+|||+.|++++. ++.|.+|++   ........+..+  ..+.+++|+|++    +.++.+.    
T Consensus        83 -----~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~~~  151 (343)
T 1ri6_A           83 -----PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL--DGCHSANISPDN----RTLWVPALKQD  151 (343)
T ss_dssp             -----SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC--TTBCCCEECTTS----SEEEEEEGGGT
T ss_pred             -----CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC--CCceEEEECCCC----CEEEEecCCCC
Confidence                 337899999999998877765 788999999   444455555544  358889999998    5444332    


Q ss_pred             eeEEEcCCC-ceEEEE----ecC-CcceE--EEEec-ceee-eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEee
Q 005459          374 SMMQWDEYG-YRLYAI----EEG-SSERV--LIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN  443 (696)
Q Consensus       374 ~~~~W~~~~-~~l~~~----~~~-~~~~v--~~~~~-~~~~-~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~  443 (696)
                      .+.+|+..+ +++...    ... ....+  +.+++ ++.+ ++...++.+.+|++.....++..         ......
T Consensus       152 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~---------~~~~~~  222 (343)
T 1ri6_A          152 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC---------VQTLDM  222 (343)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE---------EEEEEC
T ss_pred             EEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE---------Eeeccc
Confidence            889999887 654321    111 12233  66777 6655 45557888999987532211000         000001


Q ss_pred             cCeeeecCCCceEEEEEcCCCCEEEEEe-CCccE-EEEcc--CCceEecCCccceeeeEEEeEeee--CcEEEEEEeecC
Q 005459          444 LPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDIR--QKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDS  517 (696)
Q Consensus       444 ~~~~~~~~~~~I~~va~s~dG~~la~ag-~dG~i-~w~~~--sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~  517 (696)
                      ++..+. ....+..++|+|||++|++++ .++.+ +|++.  +++.+.........  .+.+++|.  ++.+++++    
T Consensus       223 ~~~~~~-~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~----  295 (343)
T 1ri6_A          223 MPENFS-DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET--QPRGFNVDHSGKYLIAAG----  295 (343)
T ss_dssp             SCTTCC-SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS--SCCCEEECTTSSEEEEEC----
T ss_pred             cCcccc-ccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC--ccceEEECCCCCEEEEec----
Confidence            121111 123467899999999887555 68889 99998  55555432221111  15578886  45677662    


Q ss_pred             CCeEEEEEeeCC
Q 005459          518 SNTYELLFYPRY  529 (696)
Q Consensus       518 ~~~~~lr~y~~~  529 (696)
                      ..+..+++|..+
T Consensus       296 ~~~~~v~v~~~d  307 (343)
T 1ri6_A          296 QKSHHISVYEIV  307 (343)
T ss_dssp             TTTCEEEEEEEE
T ss_pred             CCCCeEEEEEEc
Confidence            244789999664

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.68  E-value=7.8e-16  Score=178.78  Aligned_cols=324  Identities=9%  Similarity=0.043  Sum_probs=189.6

Q ss_pred             cEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEec
Q 005459           71 LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS  150 (696)
Q Consensus        71 ~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~  150 (696)
                      ..+.|+|||++++ .+.+|.|++|++.++........+                .  .......-.++++|++.|+.++.
T Consensus        19 ~~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~----------------~--~~~~~~~~~~~SpDg~~la~~~~   79 (719)
T 1z68_A           19 FFPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNR----------------T--MKSVNASNYGLSPDRQFVYLESD   79 (719)
T ss_dssp             CCCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHH----------------H--HHTTTCSEEEECTTSSEEEEEEE
T ss_pred             CccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccc----------------c--ccccceeeEEECCCCCeEEEEec
Confidence            4789999996555 457999999999765432111000                0  00001223467889999998876


Q ss_pred             ---------CCcEEEEecCCccccc-eeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCc
Q 005459          151 ---------DGSLYSISWKGEFYGA-FELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM  220 (696)
Q Consensus       151 ---------~g~i~~~~w~~~~~~~-~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  220 (696)
                               ++.|++++.++..... .                                   .+.   ..+.        
T Consensus        80 ~~~~~~~s~~~~i~~~d~~~g~~~~~~-----------------------------------~l~---~~~~--------  113 (719)
T 1z68_A           80 YSKLWRYSYTATYYIYDLSNGEFVRGN-----------------------------------ELP---RPIQ--------  113 (719)
T ss_dssp             EEECSSSCEEEEEEEEETTTTEECCSS-----------------------------------CCC---SSBC--------
T ss_pred             CceeEEeecceEEEEEECCCCccccce-----------------------------------ecC---cccc--------
Confidence                     5677665433221100 0                                   000   0111        


Q ss_pred             ceEEEEEeCCcEEEEeeccCCceeeeeeeccee----cCCCCe------------------EEEEEcCCCcEEEEEecCC
Q 005459          221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDA------------------VCASIAPEQQILAVGTRRG  278 (696)
Q Consensus       221 ~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~------------------v~v~~sp~~~~la~g~~dg  278 (696)
                        .+.++|||+.++.+. ++++++|+...++..    .++...                  ..++|||||+.||+++.|.
T Consensus       114 --~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~  190 (719)
T 1z68_A          114 --YLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFND  190 (719)
T ss_dssp             --CEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEEC
T ss_pred             --cceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECC
Confidence              245889998887764 668888987654322    122221                  2499999999999998763


Q ss_pred             ----------------------------------eEEEEEccCCCcee--eEEeeccCCCCCCCCCCeEEEEECCCCCeE
Q 005459          279 ----------------------------------VVELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAF  322 (696)
Q Consensus       279 ----------------------------------~v~vw~~~~~~~~~--~~~~~~~~~~~~~h~g~V~~l~~spdg~~l  322 (696)
                                                        +|++||+++ ++..  ..+..  .....+|.+.+..++|||||+.+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~SpD~~~~  267 (719)
T 1z68_A          191 TDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY-PAYVGPQEVPV--PAMIASSDYYFSWLTWVTDERVC  267 (719)
T ss_dssp             TTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC-HHHHCCEECCC--CHHHHTSCEEEEEEEESSSSEEE
T ss_pred             CCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC-CCccceeEccC--CccCCCCcceEEEeEEeCCCeEE
Confidence                                              788999876 4432  11110  00001278889999999998877


Q ss_pred             EEEEcCC----cEEEEE----ccCCeeEEEee----ccccccee-----cccccCCCCCCccceec--c----e-eeEEE
Q 005459          323 AVGWKSR----GLTVWS----VSGCRLMSTIR----QISLSSIS-----SPIVKPNQDCKYEPLMS--G----T-SMMQW  378 (696)
Q Consensus       323 asg~~Dg----~v~vW~----~~~~~~~~~l~----~~~~~~v~-----~~~~sp~~~~~~~~l~s--g----~-~~~~W  378 (696)
                      ++....+    .|.+||    +.++++...+.    ++ ...+.     .++|+|++    +.++.  +    . .+..|
T Consensus       268 ~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg----~~l~~~~~~~~g~~~l~~~  342 (719)
T 1z68_A          268 LQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR-TGWAGGFFVSTPVFSYDA----ISYYKIFSDKDGYKHIHYI  342 (719)
T ss_dssp             EEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS-SSCSSSSSCCCCEECTTS----SCEEEEEECTTSCEEEEEE
T ss_pred             EEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC-CceEccccCCccEECCCC----CeEEEEEEccCCceEEEEE
Confidence            7754332    388899    77777655552    33 44565     78999998    53321  1    1 67788


Q ss_pred             cCCCceEEEEecCCcceE---EEEecceeee-eccC----CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec
Q 005459          379 DEYGYRLYAIEEGSSERV---LIFSFGKCCL-NRGV----SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS  450 (696)
Q Consensus       379 ~~~~~~l~~~~~~~~~~v---~~~~~~~~~~-s~~~----d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  450 (696)
                      +..+++... +..+...+   ..+ .++.++ ++..    ++..++|.+.......           .  ...+...+.+
T Consensus       343 ~~~~~~~~~-lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~-----------~--~~~l~~~~~~  407 (719)
T 1z68_A          343 KDTVENAIQ-ITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPP-----------S--KKCVTCHLRK  407 (719)
T ss_dssp             SSCSTTCEE-CSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSC-----------C--EEESSTTTTT
T ss_pred             ECCCCceEe-cccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCC-----------C--ceeccCccCC
Confidence            887766433 33333333   222 444444 3333    4677788775421100           0  0001111223


Q ss_pred             CCCceEEEEEcCCCCEEEEEe-CC--ccE-EEEccCCce
Q 005459          451 QNWPVQHVAASKDGMFLAVAG-LH--GLI-LYDIRQKKW  485 (696)
Q Consensus       451 ~~~~I~~va~s~dG~~la~ag-~d--G~i-~w~~~sg~w  485 (696)
                      |...+..++|||||++++..+ ..  ..+ +||+.+++.
T Consensus       408 ~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~  446 (719)
T 1z68_A          408 ERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE  446 (719)
T ss_dssp             TTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence            556788999999999887643 33  355 899888763

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.68  E-value=3.4e-14  Score=149.30  Aligned_cols=284  Identities=8%  Similarity=-0.005  Sum_probs=159.2

Q ss_pred             cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec---CcEEEEEEEEecCcccccCCCCCCCcee
Q 005459           39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS---SLYLHIFKVQITEKSIQIGGKQPSGLFF  115 (696)
Q Consensus        39 ~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~---dg~l~l~~l~~~~~~~~~~~~~~~~~~~  115 (696)
                      ++.|.+|..+.....+.....    ....+....++|+|||+ |++++.   ++.|.+|++..+....           +
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~----~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~-----------~   78 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGL----LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHK-----------L   78 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEE----EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEE-----------E
T ss_pred             CCCEEEEEEcCCCCeEEEeee----eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEE-----------e
Confidence            346888876521112211111    11234456799999999 555554   5899999996432111           0


Q ss_pred             eeeeEEEeeeccccccceeEEEeeeCCCeEEEEe-cCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCccccc
Q 005459          116 IKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD  194 (696)
Q Consensus       116 ~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t-~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~  194 (696)
                      ..+    .    .......-.+++++++.++++. .++.+.+|+.+.......           +..++.....      
T Consensus        79 ~~~----~----~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~-----------~~~~~~~~~~------  133 (347)
T 3hfq_A           79 NTV----V----APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL-----------TDTVQHSGHG------  133 (347)
T ss_dssp             EEE----E----EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE-----------EEEEECCCCC------
T ss_pred             eee----e----cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee-----------cceeecCCCC------
Confidence            000    0    0011112236788899888887 678888876643111100           0000000000      


Q ss_pred             CCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeee-eccee------c-CCCCeEEEEEcC
Q 005459          195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI-KIDKE------L-GSGDAVCASIAP  266 (696)
Q Consensus       195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~-~~~~~------~-~~~~~v~v~~sp  266 (696)
                           .  ........+..          ++++|||+++++...++.+.+|+.. .++..      . ....+..++|+|
T Consensus       134 -----p--~~~~~~~~~~~----------~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp  196 (347)
T 3hfq_A          134 -----P--RPEQDGSHIHY----------TDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP  196 (347)
T ss_dssp             -----S--STTCSSCCEEE----------EEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT
T ss_pred             -----C--CccccCCCceE----------EEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC
Confidence                 0  00011122333          4578899966655567788889876 22211      1 112344599999


Q ss_pred             CCcEEEE-EecCCeEEEEEccCC-Cce--eeEEeeccCCCCCCCCCCeEEEEECCCCCeE-EEEEcCCcEEEEEcc-CC-
Q 005459          267 EQQILAV-GTRRGVVELYDLAES-ASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKSRGLTVWSVS-GC-  339 (696)
Q Consensus       267 ~~~~la~-g~~dg~v~vw~~~~~-~~~--~~~~~~~~~~~~~~h~g~V~~l~~spdg~~l-asg~~Dg~v~vW~~~-~~-  339 (696)
                      ||++|++ +..++.|++|+++.. ++.  +..+..  .+........+..++|+|||++| ++...++.|.+|++. ++ 
T Consensus       197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~  274 (347)
T 3hfq_A          197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKT--IPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH  274 (347)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES--SCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeee--cCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence            9996655 567899999998852 222  222222  11111112458999999999987 455668999999986 22 


Q ss_pred             -eeEEEeecccccceecccccCCCCCCccceecce----eeEEE--cCCCceEEE
Q 005459          340 -RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQW--DEYGYRLYA  387 (696)
Q Consensus       340 -~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W--~~~~~~l~~  387 (696)
                       ..+..+..+ ...+..++|+|++    +.++.+.    .+.+|  +.+++++..
T Consensus       275 ~~~~~~~~~~-~~~~~~~~~spdg----~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          275 LTLIQQISTE-GDFPRDFDLDPTE----AFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             EEEEEEEECS-SSCCCEEEECTTS----SEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEeEEEecC-CCCcCeEEECCCC----CEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence             445555554 3347788999998    6555432    56677  556666543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.68  E-value=7e-15  Score=153.09  Aligned_cols=220  Identities=14%  Similarity=0.108  Sum_probs=152.2

Q ss_pred             EEEEeCCcEEE-EeeccCCceeeeeeeccee----cCC----C-CeEEEEEcCCCcEEEEEe------------cCCeEE
Q 005459          224 FVLYSNGQLMS-CSVSKKGLKLAEFIKIDKE----LGS----G-DAVCASIAPEQQILAVGT------------RRGVVE  281 (696)
Q Consensus       224 ~~~s~dG~~~~-~~~~d~~~~~~~~~~~~~~----~~~----~-~~v~v~~sp~~~~la~g~------------~dg~v~  281 (696)
                      ++++|||+.++ +...++.+.+||..+++..    .++    . ....++|+|+++.|+++.            .++.|.
T Consensus        39 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~  118 (337)
T 1pby_B           39 PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA  118 (337)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEE
T ss_pred             eEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEE
Confidence            45788997554 4445678889987655432    121    1 233489999999999886            579999


Q ss_pred             EEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCC
Q 005459          282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN  361 (696)
Q Consensus       282 vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~  361 (696)
                      +||+.+ ++.+..+..         ...+.+++|+|||+.|+++  ++.|.+||+.+++....+..+..  .....|+|+
T Consensus       119 v~d~~~-~~~~~~~~~---------~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~s~d  184 (337)
T 1pby_B          119 LYDAET-LSRRKAFEA---------PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW--EAETYAQPD  184 (337)
T ss_dssp             EEETTT-TEEEEEEEC---------CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT--TTTTBCCCB
T ss_pred             EEECCC-CcEEEEEeC---------CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc--CCCceeCCC
Confidence            999987 666665554         3457889999999999888  68999999999988877765421  124477888


Q ss_pred             CCCCccceecce---------------------------eeEEEcCCCceEEE-EecCCcceE--EEEec-ceeeeeccC
Q 005459          362 QDCKYEPLMSGT---------------------------SMMQWDEYGYRLYA-IEEGSSERV--LIFSF-GKCCLNRGV  410 (696)
Q Consensus       362 ~~~~~~~l~sg~---------------------------~~~~W~~~~~~l~~-~~~~~~~~v--~~~~~-~~~~~s~~~  410 (696)
                      +    ..+....                           .+.+|++.++++.. ....+...+  +.+++ ++.++++  
T Consensus       185 g----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--  258 (337)
T 1pby_B          185 V----LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--  258 (337)
T ss_dssp             C----CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--
T ss_pred             c----cEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--
Confidence            7    3322111                           35789998887642 122333344  56666 6666666  


Q ss_pred             CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       411 d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                      ++.+.+|++..++.                    ...+. ....+.+++|+|||++|++++.++.+ +||+.+++
T Consensus       259 ~~~v~~~d~~~~~~--------------------~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          259 YNVLESFDLEKNAS--------------------IKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             ESEEEEEETTTTEE--------------------EEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             CCeEEEEECCCCcC--------------------cceec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence            67888888654332                    11111 12346789999999999999999999 99998875

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.67  E-value=6.3e-15  Score=153.60  Aligned_cols=267  Identities=10%  Similarity=0.033  Sum_probs=173.0

Q ss_pred             EEeCCc-EEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEec-CCeEEEEEccCCCce-eeEEeecc
Q 005459          226 LYSNGQ-LMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTR-RGVVELYDLAESASL-IRTVSLYD  299 (696)
Q Consensus       226 ~s~dG~-~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~~-dg~v~vw~~~~~~~~-~~~~~~~~  299 (696)
                      |.++++ ++++...++++.+||..+++..   ..+.....++|+|+++.+++++. ++.|.+||..+ ++. ...+..  
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~--   81 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQL-EPPKVVAIQE--   81 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSS-SSCEEEEEEE--
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCC-CceeEEeccc--
Confidence            445444 5666667889999997765442   22233338999999996666655 89999999987 565 666666  


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCC---cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecc-e--
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSR---GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-T--  373 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg---~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg-~--  373 (696)
                            +.++..+++|+|||++|+++..++   .|.+||+.+++.+..+..+  .....++|+|++    +.+... .  
T Consensus        82 ------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~spdg----~~l~~~~~~~  149 (331)
T 3u4y_A           82 ------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--YDAVGIAISPNG----NGLILIDRSS  149 (331)
T ss_dssp             ------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC--TTEEEEEECTTS----SCEEEEEETT
T ss_pred             ------CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC--CCccceEECCCC----CEEEEEecCC
Confidence                  666666699999999999666653   8999999999988887764  346889999998    544332 2  


Q ss_pred             -e-eEEEcCCCceEE-----EEec-CCcceEEEEec-cee-eeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEee
Q 005459          374 -S-MMQWDEYGYRLY-----AIEE-GSSERVLIFSF-GKC-CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN  443 (696)
Q Consensus       374 -~-~~~W~~~~~~l~-----~~~~-~~~~~v~~~~~-~~~-~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~  443 (696)
                       . +.+|+......+     .... +....-+.+++ ++. +++...++.+.+|++..++...                 
T Consensus       150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-----------------  212 (331)
T 3u4y_A          150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENIT-----------------  212 (331)
T ss_dssp             TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCE-----------------
T ss_pred             CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccc-----------------
Confidence             5 788887643221     1111 12222266777 664 4555678889999976554300                 


Q ss_pred             cCeeeecCCCceEEEEEcCCCCEEEEEeC-CccE-EEEccCCceEecCCccc-----ee-eeEEEeEeee--CcEEEEEE
Q 005459          444 LPVSYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIRQKKWRVFGDITQ-----EQ-KIQSKGLLWL--GKIIVVCN  513 (696)
Q Consensus       444 ~~~~~~~~~~~I~~va~s~dG~~la~ag~-dG~i-~w~~~sg~w~~f~~~~~-----e~-~~~v~~~~w~--~~~lv~~~  513 (696)
                      ....+. ....+..++|+|||++++++.. ++.+ +||..+++.+.......     .. .+.+.+++|.  +..|++++
T Consensus       213 ~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~  291 (331)
T 3u4y_A          213 LLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA  291 (331)
T ss_dssp             EEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEE
T ss_pred             eeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEec
Confidence            011121 2345678999999998877664 6778 99999987643221110     01 1112346776  44566552


Q ss_pred             eecCCCeEEEEEeeCC
Q 005459          514 YIDSSNTYELLFYPRY  529 (696)
Q Consensus       514 ~~~~~~~~~lr~y~~~  529 (696)
                          .++..|++|+.+
T Consensus       292 ----~~~~~v~v~d~~  303 (331)
T 3u4y_A          292 ----NISRELKVFTIS  303 (331)
T ss_dssp             ----TTTTEEEEEETT
T ss_pred             ----CCCCcEEEEEec
Confidence                344689999875

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.66  E-value=1e-14  Score=148.28  Aligned_cols=252  Identities=11%  Similarity=0.011  Sum_probs=166.0

Q ss_pred             EEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC-CeeEEEeeccccc
Q 005459          273 VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQISLS  351 (696)
Q Consensus       273 ~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~-~~~~~~l~~~~~~  351 (696)
                      .++.|++|++||+.+ ++. ..+..        |.+.|.+++|+|||++|++++ ++.|.+||+.+ ++.......++..
T Consensus        17 ~~~~~~~i~~~d~~~-~~~-~~~~~--------~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~   85 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRT-RKM-RVVWQ--------TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATI   85 (297)
T ss_dssp             -CCCCEEEEEEETTT-TEE-EEEEE--------ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCC
T ss_pred             CCCcceeEEEEeCCC-Cce-eeecc--------CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccc
Confidence            346789999999986 443 34555        788999999999999999987 68999999999 8777666666456


Q ss_pred             ceecccccCCCCCCccceecce-------eeEEEcCCCceEEEEecCCcceEEEEec-ceeee-eccCCCCceeeeeeec
Q 005459          352 SISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCL-NRGVSGMTYARQVIYG  422 (696)
Q Consensus       352 ~v~~~~~sp~~~~~~~~l~sg~-------~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~-s~~~d~~~~~w~~~~~  422 (696)
                      .+.+++|+|++    +.++.+.       .+..|+..+++.............++++ ++.++ +++.++.+++|++...
T Consensus        86 ~~~~~~~spdg----~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~  161 (297)
T 2ojh_A           86 CNNDHGISPDG----ALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID  161 (297)
T ss_dssp             BCSCCEECTTS----SEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             cccceEECCCC----CEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence            78999999998    6666544       3444555555543332222222256776 66665 7778888899987543


Q ss_pred             CCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEe-CCccE-EEEcc--CCceEecCCccceeeeE
Q 005459          423 EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDIR--QKKWRVFGDITQEQKIQ  498 (696)
Q Consensus       423 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag-~dG~i-~w~~~--sg~w~~f~~~~~e~~~~  498 (696)
                      ...                   ...+..+...+.+++|+|||++|++++ .++.+ +|++.  +++.+.+..    ....
T Consensus       162 ~~~-------------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~  218 (297)
T 2ojh_A          162 SGV-------------------ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD----SAYG  218 (297)
T ss_dssp             TCC-------------------EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC----CSEE
T ss_pred             CCc-------------------ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec----CCcc
Confidence            331                   234456677899999999999988776 48888 98875  444444322    1234


Q ss_pred             EEeEeee--CcEEEEEEeecCC------CeEEEEEeeCCCCCccceeE--EeecCCccEEEEccCCEEEEEEcC
Q 005459          499 SKGLLWL--GKIIVVCNYIDSS------NTYELLFYPRYHLDQSSLLC--RKSLLAKPIVMDVYEDYILVTYRP  562 (696)
Q Consensus       499 v~~~~w~--~~~lv~~~~~~~~------~~~~lr~y~~~~l~~~~~~~--~~~~~~~~l~~~~~~~~llv~~~d  562 (696)
                      +..+.|.  ++.+++++.....      ...+|.+|+.+.-....+..  .+.-....+.++++++.|++++.+
T Consensus       219 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          219 DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            6678886  4556665443211      34789999875221111211  111122236778888888886654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.66  E-value=7.1e-14  Score=162.87  Aligned_cols=375  Identities=7%  Similarity=-0.013  Sum_probs=201.8

Q ss_pred             eEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhc-ccccEEEEcCCCcEEEEEecC---------cEEE
Q 005459           23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKLIAVVTSS---------LYLH   92 (696)
Q Consensus        23 ~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wsPDg~~lav~t~d---------g~l~   92 (696)
                      .-+.++|||+++++. +++|.+|+.. .+.....+....  .... ....++.|||||++||.++.+         +.+.
T Consensus        20 ~~~~w~~dg~~~~~~-~~~i~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ-ENNILVFNAE-YGNSSVFLENST--FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCEEECSSSEEEEEE-TTEEEEEETT-TCCEEEEECTTT--TTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccEECCCCcEEEEc-CCcEEEEECC-CCceEEEEechh--hhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            347899999999887 8899999985 444332222221  1111 223458999999999998876         5667


Q ss_pred             EEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccC
Q 005459           93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHS  172 (696)
Q Consensus        93 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~  172 (696)
                      +||++++..... ..+                     .....--.+++|++.|+.+ .++.|++++.++  .....+.  
T Consensus        96 ~~d~~~~~~~~l-~~~---------------------~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~--~~~~~lt--  148 (740)
T 4a5s_A           96 IYDLNKRQLITE-ERI---------------------PNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPN--LPSYRIT--  148 (740)
T ss_dssp             EEETTTTEECCS-SCC---------------------CTTEEEEEECSSTTCEEEE-ETTEEEEESSTT--SCCEECC--
T ss_pred             EEECCCCcEEEc-ccC---------------------CCcceeeEECCCCCEEEEE-ECCeEEEEECCC--CceEEEc--
Confidence            898875542111 000                     0111233678899988777 567887754332  2211110  


Q ss_pred             CCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEE----EEEcc---CcceEEEEEeCCcEEEEeeccCC-cee
Q 005459          173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIW----LELCL---PMRLLFVLYSNGQLMSCSVSKKG-LKL  244 (696)
Q Consensus       173 p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~----~~~~~---~~~~~~~~s~dG~~~~~~~~d~~-~~~  244 (696)
                                 +  ++                  +...+..    -.|..   .....++++|||+.++..+.|.+ +++
T Consensus       149 -----------~--~g------------------~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~  197 (740)
T 4a5s_A          149 -----------W--TG------------------KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPL  197 (740)
T ss_dssp             -----------S--CC------------------BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCE
T ss_pred             -----------C--CC------------------CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCce
Confidence                       0  00                  0000000    00000   11223578999998888775554 788


Q ss_pred             eeeeecceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccC---CCc-eeeEEeeccCCCCCCCCCCeEEEEECCCC
Q 005459          245 AEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE---SAS-LIRTVSLYDWGYSMDDTGPVSCIAWTPDN  319 (696)
Q Consensus       245 ~~~~~~~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~---~~~-~~~~~~~~~~~~~~~h~g~V~~l~~spdg  319 (696)
                      |+........++..... +.+.+.|...    ...+|++||+++   ... ....+....  ...+|...+..++|||||
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~yp~~G~~~----~~~~l~v~d~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~wspdg  271 (740)
T 4a5s_A          198 IEYSFYSDESLQYPKTVRVPYPKAGAVN----PTVKFFVVNTDSLSSVTNATSIQITAPA--SMLIGDHYLCDVTWATQE  271 (740)
T ss_dssp             EEEEECCSTTCSSCEEEEEECCBTTSCC----CEEEEEEEETTSCCSSSCCCEEEECCCH--HHHTSCEEEEEEEEEETT
T ss_pred             EEEEeecCCCCCCCcceeecCCCCcCcC----CeeEEEEEECCCCCCCCcceEEEecCCc--cCCCCCeEEEEEEEeCCC
Confidence            87654321111333344 7777776531    223688899875   321 222232100  000267779999999999


Q ss_pred             CeEEEEEc----CCcEEEEEccCCe----eE--EEe--eccccccee-----cccccCCCCCCcccee-cce------ee
Q 005459          320 SAFAVGWK----SRGLTVWSVSGCR----LM--STI--RQISLSSIS-----SPIVKPNQDCKYEPLM-SGT------SM  375 (696)
Q Consensus       320 ~~lasg~~----Dg~v~vW~~~~~~----~~--~~l--~~~~~~~v~-----~~~~sp~~~~~~~~l~-sg~------~~  375 (696)
                      +.++....    +..|.+||+.+++    +.  .++  .++ ...+.     .++|+||+    +.++ ..+      .+
T Consensus       272 ~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~-~~~v~~~~~~~p~fspDG----~~l~~~~s~~~G~~~l  346 (740)
T 4a5s_A          272 RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST-TGWVGRFRPSEPHFTLDG----NSFYKIISNEEGYRHI  346 (740)
T ss_dssp             EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS-SSCSSSSSCCCCEECTTS----SEEEEEEECTTSCEEE
T ss_pred             eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC-CceEccCcCCCceEcCCC----CEEEEEEEcCCCceEE
Confidence            97766543    2369999998876    22  222  223 33343     78899998    5443 221      67


Q ss_pred             EEEcCCCceEEEEecCCcceE--EEEecceee-eeccC----CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee
Q 005459          376 MQWDEYGYRLYAIEEGSSERV--LIFSFGKCC-LNRGV----SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY  448 (696)
Q Consensus       376 ~~W~~~~~~l~~~~~~~~~~v--~~~~~~~~~-~s~~~----d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  448 (696)
                      ..|+..+++......+.-.-.  ..++ ++.+ .+++.    .+..++|.+.......              ...+...+
T Consensus       347 ~~~~~~~~~~~~lT~g~~~v~~~~~~d-~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~--------------~~~lt~~~  411 (740)
T 4a5s_A          347 CYFQIDKKDCTFITKGTWEVIGIEALT-SDYLYYISNEYKGMPGGRNLYKIQLIDYTK--------------VTCLSCEL  411 (740)
T ss_dssp             EEEETTCSSCEESCCSSSCEEEEEEEC-SSEEEEEESCGGGCTTCBEEEEEETTEEEE--------------EEESSTTT
T ss_pred             EEEECCCCceEecccCCEEEEEEEEEe-CCEEEEEEecCCCCCceeEEEEEECCCCCc--------------ceeecccc
Confidence            778877766555444422111  2222 3332 23322    1223344332211100              00011111


Q ss_pred             ecCCCceEEEEEcCCCCEEEEEeCC---ccE-EEEccCCce
Q 005459          449 ISQNWPVQHVAASKDGMFLAVAGLH---GLI-LYDIRQKKW  485 (696)
Q Consensus       449 ~~~~~~I~~va~s~dG~~la~ag~d---G~i-~w~~~sg~w  485 (696)
                      .+........+|||||++++.....   ..+ +++..+++-
T Consensus       412 ~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~  452 (740)
T 4a5s_A          412 NPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKG  452 (740)
T ss_dssp             STTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred             CCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcE
Confidence            1223457889999999988766554   244 777776653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.65  E-value=5.3e-14  Score=147.69  Aligned_cols=259  Identities=10%  Similarity=0.005  Sum_probs=169.1

Q ss_pred             EEEEeCCcEEEEeec-------cCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEE-EEecCCeEEEEEccCCCcee
Q 005459          224 FVLYSNGQLMSCSVS-------KKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILA-VGTRRGVVELYDLAESASLI  292 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~-------d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la-~g~~dg~v~vw~~~~~~~~~  292 (696)
                      ++++|||+.++++..       ++++.+||..+++..   .....+..++|+|+++.++ ++..++.|.+||..+ ++.+
T Consensus        46 ~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~  124 (353)
T 3vgz_A           46 MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT-GEVK  124 (353)
T ss_dssp             EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTT-CCEE
T ss_pred             eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCC-CeeE
Confidence            557888887776663       456888887655432   1122333499999999555 455579999999987 6776


Q ss_pred             eEEeeccCCC-CCCCCCCeEEEEECCCCCeEEEEE--cCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce
Q 005459          293 RTVSLYDWGY-SMDDTGPVSCIAWTPDNSAFAVGW--KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL  369 (696)
Q Consensus       293 ~~~~~~~~~~-~~~h~g~V~~l~~spdg~~lasg~--~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l  369 (696)
                      ..+....... .......+.+++|+|||+.++++.  .++.|.+||+.+++....+..+ ...+..++|+|++    +.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~dg----~~l  199 (353)
T 3vgz_A          125 GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT-GKMSTGLALDSEG----KRL  199 (353)
T ss_dssp             EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC-CTTCCCCEEETTT----TEE
T ss_pred             EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC-CCccceEEECCCC----CEE
Confidence            7666511000 000011278999999999888776  4788999999999988888744 2347889999998    555


Q ss_pred             ecce---eeEEEcCCCceEEEEecC----CcceE--EEEec-ceeeeec-cCCCCceeeeeeecCCeEEEEecCCCCcce
Q 005459          370 MSGT---SMMQWDEYGYRLYAIEEG----SSERV--LIFSF-GKCCLNR-GVSGMTYARQVIYGEDRLLVVQSEDTDELK  438 (696)
Q Consensus       370 ~sg~---~~~~W~~~~~~l~~~~~~----~~~~v--~~~~~-~~~~~s~-~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~  438 (696)
                      +.+.   .+.+|+..+++.......    +...+  +++++ ++.+..+ ..++.+.+|+...++..             
T Consensus       200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~-------------  266 (353)
T 3vgz_A          200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL-------------  266 (353)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE-------------
T ss_pred             EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-------------
Confidence            4433   788999999988766543    23333  56666 5555444 44578888886544431             


Q ss_pred             eEEeecCeeeecCCCceEEEEEcCCCCEEEEEe-CCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEe
Q 005459          439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNY  514 (696)
Q Consensus       439 w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag-~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~  514 (696)
                             ..+.... + ..++|+|||+++++++ .++.+ +||..+++....-.    ....+.+++|.  ++.+.+++.
T Consensus       267 -------~~~~~~~-~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~v~~~  333 (353)
T 3vgz_A          267 -------AKVAAPE-S-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD----TPTHPNSLALSADGKTLYVSVK  333 (353)
T ss_dssp             -------EEEECSS-C-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE----CCSEEEEEEECTTSCEEEEEEE
T ss_pred             -------EEEEcCC-C-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe----cCCCCCeEEEcCCCCEEEEEEc
Confidence                   1111111 2 4689999999776666 68889 99999886432111    11135678885  455666644

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.65  E-value=3.7e-14  Score=148.88  Aligned_cols=217  Identities=8%  Similarity=0.009  Sum_probs=155.4

Q ss_pred             EEEEeCCcEEE-EeeccCCceeeeeeeccee---cCCC----------CeEEEEEcCCCcEEEEEe--cCCeEEEEEccC
Q 005459          224 FVLYSNGQLMS-CSVSKKGLKLAEFIKIDKE---LGSG----------DAVCASIAPEQQILAVGT--RRGVVELYDLAE  287 (696)
Q Consensus       224 ~~~s~dG~~~~-~~~~d~~~~~~~~~~~~~~---~~~~----------~~v~v~~sp~~~~la~g~--~dg~v~vw~~~~  287 (696)
                      +++++||+.++ +...++.+.+||..+++..   ..+.          .+..++|+|+++.++++.  .++.|.+||..+
T Consensus        94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~  173 (353)
T 3vgz_A           94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN  173 (353)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred             EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence            45789998544 4445788889987665432   1111          134499999999888776  488999999987


Q ss_pred             CCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc---cccceecccccCCCCC
Q 005459          288 SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI---SLSSISSPIVKPNQDC  364 (696)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~---~~~~v~~~~~sp~~~~  364 (696)
                       ++.+..+..        +...+..++|+|||+.|+++..++.+.+||+.+++....+...   ....+..++|+|++  
T Consensus       174 -~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg--  242 (353)
T 3vgz_A          174 -IKLKTAIQN--------TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTAR--  242 (353)
T ss_dssp             -TEEEEEECC--------CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTT--
T ss_pred             -CceEEEecC--------CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCC--
Confidence             677766664        4455888999999999999999999999999999888777642   13346778999998  


Q ss_pred             Cccceecc----eeeEEEcCCCceEEEEecCCcceEEEEec-cee-eeeccCCCCceeeeeeecCCeEEEEecCCCCcce
Q 005459          365 KYEPLMSG----TSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKC-CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK  438 (696)
Q Consensus       365 ~~~~l~sg----~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~-~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~  438 (696)
                        +.+..+    ..+.+|+..+++++.........-+.+++ ++. .++...++.+.+|+...++.              
T Consensus       243 --~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~--------------  306 (353)
T 3vgz_A          243 --QRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV--------------  306 (353)
T ss_dssp             --TEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEE--------------
T ss_pred             --CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeE--------------
Confidence              544332    27889999988887766543333367777 554 45555788888888654432              


Q ss_pred             eEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCc
Q 005459          439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG  474 (696)
Q Consensus       439 w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG  474 (696)
                            ...+. ....+.+++|+|||++|+++..++
T Consensus       307 ------~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          307 ------VKTFD-TPTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             ------EEEEE-CCSEEEEEEECTTSCEEEEEEECC
T ss_pred             ------EEEEe-cCCCCCeEEEcCCCCEEEEEEccc
Confidence                  11121 223578999999999998888765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.64  E-value=2.4e-13  Score=143.74  Aligned_cols=282  Identities=12%  Similarity=0.076  Sum_probs=159.5

Q ss_pred             cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecC----cEEEEEEEEecCcccccCCCCCCCce
Q 005459           39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS----LYLHIFKVQITEKSIQIGGKQPSGLF  114 (696)
Q Consensus        39 ~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~d----g~l~l~~l~~~~~~~~~~~~~~~~~~  114 (696)
                      ++.|.+|..+.....+.....    . +......++|+|||++|++++.+    |.+.+|+++........         
T Consensus        26 ~~~i~~~~~d~~~g~~~~~~~----~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~---------   91 (361)
T 3scy_A           26 SKGIYTFRFNEETGESLPLSD----A-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL---------   91 (361)
T ss_dssp             CCEEEEEEEETTTCCEEEEEE----E-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE---------
T ss_pred             CCCEEEEEEeCCCCCEEEeec----c-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE---------
Confidence            457999976421111111111    1 22344679999999999998875    79999999853211100         


Q ss_pred             eeeeeEEEeeeccccccceeEEEeeeCCCeEEEEe-cCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccc
Q 005459          115 FIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASV  193 (696)
Q Consensus       115 ~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t-~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~  193 (696)
                      +.        ..  .......+.++.+++.++++. .++.+.+|+.+....... .         .....+....     
T Consensus        92 ~~--------~~--~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~-~---------~~~~~~~g~~-----  146 (361)
T 3scy_A           92 LN--------TQ--KTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLP-A---------SDVIEFKGSG-----  146 (361)
T ss_dssp             EE--------EE--ECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCS-C---------SEEEECCCCC-----
T ss_pred             ee--------Ee--ccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcc-c---------ceeEEccCCC-----
Confidence            00        00  001112233444778788776 467888876543211100 0         0000000000     


Q ss_pred             cCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEee-ccCCceeeeeeecc---------------e-ecC-
Q 005459          194 DTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKID---------------K-ELG-  255 (696)
Q Consensus       194 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~-~d~~~~~~~~~~~~---------------~-~~~-  255 (696)
                             ..........+..          ++++|||+.++++. .++.+.+|+.....               . ... 
T Consensus       147 -------~~~~~~~~~~~~~----------~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~  209 (361)
T 3scy_A          147 -------PDKERQTMPHLHC----------VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP  209 (361)
T ss_dssp             -------SCTTTCSSCCEEE----------EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT
T ss_pred             -------CCccccCCCcceE----------EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC
Confidence                   0000011222333          45889998555444 46778888765321               1 122 


Q ss_pred             CCCeEEEEEcCCCcEEEEEe-cCCeEEEEEccCCCce--eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC--Cc
Q 005459          256 SGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS--RG  330 (696)
Q Consensus       256 ~~~~v~v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~--~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D--g~  330 (696)
                      ...+..++|+|||++|++++ .+++|.+|++++ +..  +..+..     ...+......++|||||++|+++..+  +.
T Consensus       210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~-----~~~~~~~~~~i~~spdg~~l~v~~~~~~~~  283 (361)
T 3scy_A          210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAA-----DTVNAQGSGDIHLSPDGKYLYASNRLKADG  283 (361)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEES-----CSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred             CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEec-----CCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence            23344599999999888777 689999999986 433  222222     11244557899999999999777664  89


Q ss_pred             EEEEEcc--CCe--eEEEeecccccceecccccCCCCCCccceecce----eeEE--EcCCCceEEEE
Q 005459          331 LTVWSVS--GCR--LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQ--WDEYGYRLYAI  388 (696)
Q Consensus       331 v~vW~~~--~~~--~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~--W~~~~~~l~~~  388 (696)
                      |.+|++.  ++.  .+..+..  ...+..++|+|++    +.++.+.    .+.+  |+.+++++...
T Consensus       284 i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg----~~l~~~~~~~~~v~v~~~d~~~g~~~~~  345 (361)
T 3scy_A          284 VAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNG----KYLLVACRDTNVIQIFERDQATGLLTDI  345 (361)
T ss_dssp             EEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTS----CEEEEEETTTTEEEEEEECTTTCCEEEC
T ss_pred             EEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCC----CEEEEEECCCCCEEEEEEECCCCcEeec
Confidence            9999995  344  3344433  2346788999998    6555443    4555  56667776554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.64  E-value=2.4e-14  Score=149.06  Aligned_cols=271  Identities=11%  Similarity=0.005  Sum_probs=166.9

Q ss_pred             cEEEEeeccCCceeeeeeeccee----cCCC--CeEEEEEcCCCcEE-EEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459          231 QLMSCSVSKKGLKLAEFIKIDKE----LGSG--DAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYS  303 (696)
Q Consensus       231 ~~~~~~~~d~~~~~~~~~~~~~~----~~~~--~~v~v~~sp~~~~l-a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~  303 (696)
                      ++++++..++++.+||..+++..    .++.  .+..++|+|+++.+ +++..++.|.+||+.+ ++.+..+.....   
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~---   77 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTP---   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBT---
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC-CCeEeeEEcCCc---
Confidence            35666777888888887655432    2222  24459999999765 5556689999999987 666666654100   


Q ss_pred             CCCCCCeEEEEECCCCCeEEEEE------------cCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceec
Q 005459          304 MDDTGPVSCIAWTPDNSAFAVGW------------KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS  371 (696)
Q Consensus       304 ~~h~g~V~~l~~spdg~~lasg~------------~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~s  371 (696)
                      ..|...+..++|+|||+.|+++.            .++.|.+||+.+++....+...  ..+..++|+|++    +.++.
T Consensus        78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~  151 (337)
T 1pby_B           78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDG----SKLYG  151 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTS----SCEEE
T ss_pred             ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeEECCCC----CEEEE
Confidence            00122577899999999999886            5799999999998888777653  347788999998    64443


Q ss_pred             c-eeeEEEcCCCceEEEEecCCc-ceEEEEec-ceeeeeccCCCCce--eeeeeecCC----------eEEEEecCCCCc
Q 005459          372 G-TSMMQWDEYGYRLYAIEEGSS-ERVLIFSF-GKCCLNRGVSGMTY--ARQVIYGED----------RLLVVQSEDTDE  436 (696)
Q Consensus       372 g-~~~~~W~~~~~~l~~~~~~~~-~~v~~~~~-~~~~~s~~~d~~~~--~w~~~~~~~----------~~~~~~~~~~~~  436 (696)
                      + ..+.+|+..++++......+. ..-..+++ ++.+...+......  .+.......          .+.++.......
T Consensus       152 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  231 (337)
T 1pby_B          152 LGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM  231 (337)
T ss_dssp             ESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred             eCCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc
Confidence            3 489999999998876664432 11124444 44443333222111  111110000          112221111000


Q ss_pred             ceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEE
Q 005459          437 LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCN  513 (696)
Q Consensus       437 ~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~  513 (696)
                         .    ...+..+...+..++|+|||++++++  ++.+ +||+.+++......    ....+.+++|.  ++.++++ 
T Consensus       232 ---~----~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~-  297 (337)
T 1pby_B          232 ---A----MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP----LPHSYYSVNVSTDGSTVWLG-  297 (337)
T ss_dssp             ---E----EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE----CSSCCCEEEECTTSCEEEEE-
T ss_pred             ---e----EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec----CCCceeeEEECCCCCEEEEE-
Confidence               0    11223455568899999999999988  6888 99999876422110    11124577886  4466665 


Q ss_pred             eecCCCeEEEEEeeCC
Q 005459          514 YIDSSNTYELLFYPRY  529 (696)
Q Consensus       514 ~~~~~~~~~lr~y~~~  529 (696)
                          ..+.+|++|+.+
T Consensus       298 ----~~~~~i~v~d~~  309 (337)
T 1pby_B          298 ----GALGDLAAYDAE  309 (337)
T ss_dssp             ----SBSSEEEEEETT
T ss_pred             ----cCCCcEEEEECc
Confidence                234689999875

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.61  E-value=1.4e-12  Score=137.75  Aligned_cols=106  Identities=10%  Similarity=0.136  Sum_probs=70.9

Q ss_pred             CCcEEEEee-ccCCceeeeeeeccee---------cC--------CCC-eEEEEEcCCCcEEEEEe-cCCeEEEEEccCC
Q 005459          229 NGQLMSCSV-SKKGLKLAEFIKIDKE---------LG--------SGD-AVCASIAPEQQILAVGT-RRGVVELYDLAES  288 (696)
Q Consensus       229 dG~~~~~~~-~d~~~~~~~~~~~~~~---------~~--------~~~-~v~v~~sp~~~~la~g~-~dg~v~vw~~~~~  288 (696)
                      ||+.++++. .++++.+|+......+         .+        +.. +.+++|+|+|++|++++ .++.|++|+++..
T Consensus       108 dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~  187 (361)
T 3scy_A          108 NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN  187 (361)
T ss_dssp             CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence            777666655 5677888886532111         01        111 23499999999665554 5899999999863


Q ss_pred             Cc------eee-----EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE-cCCcEEEEEccCCee
Q 005459          289 AS------LIR-----TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRL  341 (696)
Q Consensus       289 ~~------~~~-----~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~-~Dg~v~vW~~~~~~~  341 (696)
                      ..      +..     ....       .+...+..++|+|||++|+++. .++.|.+|++.++.+
T Consensus       188 ~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~  245 (361)
T 3scy_A          188 ANADNKEKFLTKGTPEAFKV-------APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML  245 (361)
T ss_dssp             CCTTTCCCCEEEEEEEEEEC-------CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred             CCcccccceeecccccceec-------CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence            32      211     1121       1345578999999999888777 589999999987754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.61  E-value=1.7e-14  Score=151.10  Aligned_cols=156  Identities=12%  Similarity=0.056  Sum_probs=111.5

Q ss_pred             EEeCCcEEEEeeccCCceeeeeeeccee---cCCC--CeEEEEEcCCCcEEE-EEecCCeEEEEEccCCCceeeEEeecc
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSG--DAVCASIAPEQQILA-VGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~--~~v~v~~sp~~~~la-~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      +.+++++++++..++++.+||..+++..   ..+.  .+..++|+|+++.++ ++..++.|.+||+.+ ++....+....
T Consensus         7 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t-~~~~~~~~~~~   85 (349)
T 1jmx_B            7 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANLSS   85 (349)
T ss_dssp             CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEESCC
T ss_pred             ccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC-CcEEEEEEccc
Confidence            5678888888889999999998765432   2223  455699999998654 555789999999987 66666565400


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcC------------CcEEEEEccCCee---EEEeecccccceecccccCCCCC
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKS------------RGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDC  364 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~D------------g~v~vW~~~~~~~---~~~l~~~~~~~v~~~~~sp~~~~  364 (696)
                      .+  ..+...+..++|+|||++|+++..+            +.|.+||+.+++.   +..+..+  ..+.+++|+|++  
T Consensus        86 ~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg--  159 (349)
T 1jmx_B           86 VP--GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP--RQVYLMRAADDG--  159 (349)
T ss_dssp             ST--TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC--SSCCCEEECTTS--
T ss_pred             cc--ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC--CcccceeECCCC--
Confidence            00  0002237889999999999999876            8999999987443   3333333  357888899998  


Q ss_pred             CccceecceeeEEEcCCCceEEEEec
Q 005459          365 KYEPLMSGTSMMQWDEYGYRLYAIEE  390 (696)
Q Consensus       365 ~~~~l~sg~~~~~W~~~~~~l~~~~~  390 (696)
                        +.++.+..+.+|+..++++.....
T Consensus       160 --~l~~~~~~i~~~d~~~~~~~~~~~  183 (349)
T 1jmx_B          160 --SLYVAGPDIYKMDVKTGKYTVALP  183 (349)
T ss_dssp             --CEEEESSSEEEECTTTCCEEEEEC
T ss_pred             --cEEEccCcEEEEeCCCCceecccc
Confidence              655555589999999888776654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.60  E-value=1.1e-13  Score=146.82  Aligned_cols=236  Identities=9%  Similarity=0.063  Sum_probs=148.9

Q ss_pred             EEEEEeCCcEEEEeeccCCceeeeee-eccee--c---CCCCeEEEEEcCCCcE--EEEEe-------------cCCeEE
Q 005459          223 LFVLYSNGQLMSCSVSKKGLKLAEFI-KIDKE--L---GSGDAVCASIAPEQQI--LAVGT-------------RRGVVE  281 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~d~~~~~~~~~-~~~~~--~---~~~~~v~v~~sp~~~~--la~g~-------------~dg~v~  281 (696)
                      .++++|||+.++++..+ ++.+|+.. +++..  .   .+..+.+++|+|||+.  ++++.             .+|+++
T Consensus        44 ~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~  122 (365)
T 1jof_A           44 WMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGN  122 (365)
T ss_dssp             EEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEE
T ss_pred             EEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEE
Confidence            35689999988777766 88899876 44321  1   1122333899999994  55553             689999


Q ss_pred             EEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEcc-CCeeE--EEeecc-cccceecc
Q 005459          282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVS-GCRLM--STIRQI-SLSSISSP  356 (696)
Q Consensus       282 vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~~-~~~~~--~~l~~~-~~~~v~~~  356 (696)
                      +|+++..++....+.....    .+...+.+++|||||++|+++.. ++.|++|++. ++++.  ..+... +...+..+
T Consensus       123 v~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~  198 (365)
T 1jof_A          123 VFSVSETGKLEKNVQNYEY----QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV  198 (365)
T ss_dssp             EEEECTTCCEEEEEEEEEC----CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred             EEccCCCCcCcceEeeEEe----CCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEe
Confidence            9999753555444432110    14567999999999999888764 6799999997 66542  334321 13457888


Q ss_pred             cccCCCCCCccceecce----eeEEEc--CCCceEEE------Eec----CCcc------eE--EE-Eec-ceeeeeccC
Q 005459          357 IVKPNQDCKYEPLMSGT----SMMQWD--EYGYRLYA------IEE----GSSE------RV--LI-FSF-GKCCLNRGV  410 (696)
Q Consensus       357 ~~sp~~~~~~~~l~sg~----~~~~W~--~~~~~l~~------~~~----~~~~------~v--~~-~~~-~~~~~s~~~  410 (696)
                      +|+|++    +.+..+.    ++.+|+  .+++++..      ...    ++..      .+  ++ +++ ++.+.+++.
T Consensus       199 ~~spdg----~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          199 AMHPTG----NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             EECTTS----SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             EECCCC----CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence            999998    6554322    566665  44555431      111    1121      34  55 777 777766554


Q ss_pred             CC------Cceeeeeee-cCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcC---CCCEEEEEeCC-ccE-EE
Q 005459          411 SG------MTYARQVIY-GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK---DGMFLAVAGLH-GLI-LY  478 (696)
Q Consensus       411 d~------~~~~w~~~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~---dG~~la~ag~d-G~i-~w  478 (696)
                      +.      ++.+|++.. +....                 +......+...++.++|+|   ||++|++++.+ +.+ +|
T Consensus       275 ~~~~~~~~~i~v~~~~~~g~~~~-----------------~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~  337 (365)
T 1jof_A          275 ANKFELQGYIAGFKLRDCGSIEK-----------------QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY  337 (365)
T ss_dssp             ESSTTSCCEEEEEEECTTSCEEE-----------------EEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred             CCCCCCCCeEEEEEECCCCCEEE-----------------eeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEE
Confidence            32      688888752 22110                 0000112333456789999   89999999875 888 99


Q ss_pred             EccCCc
Q 005459          479 DIRQKK  484 (696)
Q Consensus       479 ~~~sg~  484 (696)
                      ++..+.
T Consensus       338 ~~~~~~  343 (365)
T 1jof_A          338 RWKDEF  343 (365)
T ss_dssp             EEETTE
T ss_pred             EEchhh
Confidence            998763

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.60  E-value=3.5e-14  Score=154.43  Aligned_cols=153  Identities=13%  Similarity=0.133  Sum_probs=112.1

Q ss_pred             CCCeEE-EEEcCCCcEEE----EEecCCeEEEEEccCCC-------ce---eeEEeeccCCCCCCCCCCeEEEEECCC-C
Q 005459          256 SGDAVC-ASIAPEQQILA----VGTRRGVVELYDLAESA-------SL---IRTVSLYDWGYSMDDTGPVSCIAWTPD-N  319 (696)
Q Consensus       256 ~~~~v~-v~~sp~~~~la----~g~~dg~v~vw~~~~~~-------~~---~~~~~~~~~~~~~~h~g~V~~l~~spd-g  319 (696)
                      +...+. ++|+|++++||    +|+.|++|++||+.+..       +.   ++.+.+        |.+.|.+++|+|+ +
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--------h~~~V~~v~~~p~~~  162 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD--------AGGMVIDMKWNPTVP  162 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS--------GGGSEEEEEECSSCT
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCC--------CCCceEEEEECCCCC
Confidence            344465 99999999999    78889999999987520       12   222333        8999999999998 8


Q ss_pred             CeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCC----
Q 005459          320 SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS----  392 (696)
Q Consensus       320 ~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~----  392 (696)
                      +.||+|+.||+|++||+.++.......+| ...|.+++|+|++    +.+++|+   ++++|+.+ ++.......|    
T Consensus       163 ~~las~s~Dg~v~iwD~~~~~~~~~~~~~-~~~v~~v~wspdg----~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~  236 (434)
T 2oit_A          163 SMVAVCLADGSIAVLQVTETVKVCATLPS-TVAVTSVCWSPKG----KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYE  236 (434)
T ss_dssp             TEEEEEETTSCEEEEEESSSEEEEEEECG-GGCEEEEEECTTS----SCEEEEETTSCEEEECTT-CCEEEEECCCTTCC
T ss_pred             CEEEEEECCCeEEEEEcCCCcceeeccCC-CCceeEEEEcCCC----CEEEEEcCCCcEEEEccC-CcccccccCCcccC
Confidence            99999999999999999988776666666 6779999999998    8888887   89999998 4444444332    


Q ss_pred             ---cceEEEEec---ceeee-eccCCC------Cceeeeeeec
Q 005459          393 ---SERVLIFSF---GKCCL-NRGVSG------MTYARQVIYG  422 (696)
Q Consensus       393 ---~~~v~~~~~---~~~~~-s~~~d~------~~~~w~~~~~  422 (696)
                         ...+..+.+   ...++ ..+.++      .+++|++...
T Consensus       237 ~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          237 SDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence               236666655   33332 233333      2567776543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.57  E-value=3.5e-14  Score=164.88  Aligned_cols=291  Identities=11%  Similarity=0.055  Sum_probs=175.4

Q ss_pred             EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCC---CeEEEEECCCCCeEEEEEc---------C
Q 005459          261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG---PVSCIAWTPDNSAFAVGWK---------S  328 (696)
Q Consensus       261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g---~V~~l~~spdg~~lasg~~---------D  328 (696)
                      .++|+||+++++++ .||+|++||+.+ ++....+..        |..   .|.+++|||||+.||+++.         |
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~-g~~~~~~~~--------~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~   89 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIET-GQSYTILSN--------RTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYT   89 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSS-CCEEEEECH--------HHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCC-CcEEEEEcc--------ccccccceeeEEECCCCCeEEEEecCceeEEeecc
Confidence            48999999766654 699999999987 666665554        333   4899999999999999876         7


Q ss_pred             CcEEEEEccCCeeE--EEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEe-cCCcc---------
Q 005459          329 RGLTVWSVSGCRLM--STIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIE-EGSSE---------  394 (696)
Q Consensus       329 g~v~vW~~~~~~~~--~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~-~~~~~---------  394 (696)
                      ++|++||+.+++.+  ..+.    ..+..++||||+    +.++.+.  .+.+|+..+++..... .++..         
T Consensus        90 ~~i~~~d~~~g~~~~~~~l~----~~~~~~~~SPDG----~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~  161 (719)
T 1z68_A           90 ATYYIYDLSNGEFVRGNELP----RPIQYLCWSPVG----SKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDW  161 (719)
T ss_dssp             EEEEEEETTTTEECCSSCCC----SSBCCEEECSST----TCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCH
T ss_pred             eEEEEEECCCCccccceecC----cccccceECCCC----CEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccc
Confidence            89999999998763  2222    358889999999    7777655  8999999887765443 22222         


Q ss_pred             ----------eEEEEec-ceeeeeccCC-CCceeeeeeecCC---------------------eEEEEecCCCCcceeEE
Q 005459          395 ----------RVLIFSF-GKCCLNRGVS-GMTYARQVIYGED---------------------RLLVVQSEDTDELKILH  441 (696)
Q Consensus       395 ----------~v~~~~~-~~~~~s~~~d-~~~~~w~~~~~~~---------------------~~~~~~~~~~~~~~w~~  441 (696)
                                .-..+++ ++.+++++.| +.+..|.+.....                     .+.+..-.......+..
T Consensus       162 v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~  241 (719)
T 1z68_A          162 VYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE  241 (719)
T ss_dssp             HHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEE
T ss_pred             eeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeE
Confidence                      1366777 8888887765 3444443321111                     11111111000000112


Q ss_pred             eecCeeeecCCCceEEEEEcCCCCEEEEEeCCc----cE-EEE----ccCCceEecCC---ccceeeeE---EEeEeeeC
Q 005459          442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG----LI-LYD----IRQKKWRVFGD---ITQEQKIQ---SKGLLWLG  506 (696)
Q Consensus       442 ~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG----~i-~w~----~~sg~w~~f~~---~~~e~~~~---v~~~~w~~  506 (696)
                      +..|..+.+|...+.+++|||||+++++...++    .+ +||    ..+++++....   +.++..+.   ...+.|.+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  321 (719)
T 1z68_A          242 VPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSY  321 (719)
T ss_dssp             CCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECT
T ss_pred             ccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECC
Confidence            222334557888899999999998887754432    36 889    87877654331   11111111   11567763


Q ss_pred             --cEEEEEEeecCCCeEEEEEeeCCCCCccceeE-EeecCCccEEEEccCCEEEEEEcC-----ceEEEEEEEEe
Q 005459          507 --KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLC-RKSLLAKPIVMDVYEDYILVTYRP-----FDVHIFHVKLF  573 (696)
Q Consensus       507 --~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~-~~~~~~~~l~~~~~~~~llv~~~d-----~~~~l~~~~~~  573 (696)
                        +.++... .+.++...|.+|+.+.-....+.. ...+..  +... .++.++..+.+     +..+||.+...
T Consensus       322 dg~~l~~~~-~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~--~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~  392 (719)
T 1z68_A          322 DAISYYKIF-SDKDGYKHIHYIKDTVENAIQITSGKWEAIN--IFRV-TQDSLFYSSNEFEEYPGRRNIYRISIG  392 (719)
T ss_dssp             TSSCEEEEE-ECTTSCEEEEEESSCSTTCEECSCSSSCEEE--EEEE-CSSEEEEEESCGGGCTTCBEEEEEECS
T ss_pred             CCCeEEEEE-EccCCceEEEEEECCCCceEecccCceEEEE--EEEE-eCCEEEEEEecCCCCCceEEEEEEeCC
Confidence              3343321 333455788888764111110100 000111  2334 67777775544     77999999863

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.55  E-value=2.4e-13  Score=142.23  Aligned_cols=278  Identities=12%  Similarity=0.105  Sum_probs=151.8

Q ss_pred             EEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEE-ecCcEEEEEEEEecCccc
Q 005459           26 YFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVV-TSSLYLHIFKVQITEKSI  103 (696)
Q Consensus        26 ~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~-t~dg~l~l~~l~~~~~~~  103 (696)
                      +++++++++++. .+++|.+||.. .+..+..+...     ..+....++|+|||+.++++ ..++.|.+||+.++....
T Consensus         6 ~~~~~~~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~-----~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~   79 (349)
T 1jmx_B            6 ALKAGHEYMIVTNYPNNLHVVDVA-SDTVYKSCVMP-----DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF   79 (349)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETT-TTEEEEEEECS-----SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             cccCCCEEEEEeCCCCeEEEEECC-CCcEEEEEecC-----CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE
Confidence            477888888877 57899999995 44444433211     11135689999999976654 467899999986443211


Q ss_pred             ccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecC------------CcEEEEecCCccc-cceeec
Q 005459          104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSD------------GSLYSISWKGEFY-GAFELV  170 (696)
Q Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~------------g~i~~~~w~~~~~-~~~~~~  170 (696)
                      .......++.         .      .....-.+++++++.++++..+            +.|.+++.+.... ......
T Consensus        80 ~~~~~~~~~~---------~------~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~  144 (349)
T 1jmx_B           80 HANLSSVPGE---------V------GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF  144 (349)
T ss_dssp             EEESCCSTTE---------E------EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE
T ss_pred             EEEccccccc---------c------cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec
Confidence            1100000000         0      0001123567788899988865            7887765543111 111100


Q ss_pred             cCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccC------------------------cceEEEE
Q 005459          171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLP------------------------MRLLFVL  226 (696)
Q Consensus       171 ~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------------------~~~~~~~  226 (696)
                      ..|.   .+..+.+++++.+......   ...........+..+.....                        ....+.+
T Consensus       145 ~~~~---~~~~~~~s~dg~l~~~~~~---i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (349)
T 1jmx_B          145 PMPR---QVYLMRAADDGSLYVAGPD---IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR  218 (349)
T ss_dssp             ECCS---SCCCEEECTTSCEEEESSS---EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred             cCCC---cccceeECCCCcEEEccCc---EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeee
Confidence            0111   2333335555542221111   10011111111222211110                        0011222


Q ss_pred             EeCCc----------EE-EEeeccCCceeeeeeecceecCCCCeE-EEEEcC-CCcEEEEEecCCeEEEEEccCCCceee
Q 005459          227 YSNGQ----------LM-SCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAP-EQQILAVGTRRGVVELYDLAESASLIR  293 (696)
Q Consensus       227 s~dG~----------~~-~~~~~d~~~~~~~~~~~~~~~~~~~~v-~v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~  293 (696)
                      ++|+.          .+ .....+++++.++...      +.... .++|+| ++++++++  ++.|.+||+.+ ++.+.
T Consensus       219 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~-~~~~~  289 (349)
T 1jmx_B          219 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ-RKLIK  289 (349)
T ss_dssp             C-------CCCEEEEEEEEEETTTCCEEEEEEEE------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT-TEEEE
T ss_pred             cCCCcCCccccccceeEEEEeccCCcEEeccccc------CCCcceeeEecCCCCCEEEEE--cCeEEEEECcc-CeEEE
Confidence            22221          01 1112233344443321      12233 489999 99999998  89999999987 66666


Q ss_pred             EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc
Q 005459          294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI  348 (696)
Q Consensus       294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~  348 (696)
                      .+..         ...+.+++|+|||+.|++++.++.|++||+.+++.+.+++..
T Consensus       290 ~~~~---------~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          290 AANL---------DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EEEC---------SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EEcC---------CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            6654         234779999999999999988999999999999888777643

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.54  E-value=2e-13  Score=159.02  Aligned_cols=297  Identities=10%  Similarity=0.085  Sum_probs=178.8

Q ss_pred             EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC---------CcE
Q 005459          261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---------RGL  331 (696)
Q Consensus       261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D---------g~v  331 (696)
                      .++|+||+++++++  ||+|++||+.+ ++....+.+....   .+.....+++|||||+.|+.++.+         +.+
T Consensus        21 ~~~w~~dg~~~~~~--~~~i~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ--ENNILVFNAEY-GNSSVFLENSTFD---EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CEEECSSSEEEEEE--TTEEEEEETTT-CCEEEEECTTTTT---TCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccEECCCCcEEEEc--CCcEEEEECCC-CceEEEEechhhh---hhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            48999999999997  99999999988 6666666662110   112233558999999999999987         455


Q ss_pred             EEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEec-CCcceE------------
Q 005459          332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEE-GSSERV------------  396 (696)
Q Consensus       332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~-~~~~~v------------  396 (696)
                      .+||+.++++. .+..+ ...+..++||||+    +.++.+.  .+.+|+..+++...... ++...+            
T Consensus        95 ~~~d~~~~~~~-~l~~~-~~~~~~~~~SPdG----~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee  168 (740)
T 4a5s_A           95 DIYDLNKRQLI-TEERI-PNNTQWVTWSPVG----HKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (740)
T ss_dssp             EEEETTTTEEC-CSSCC-CTTEEEEEECSST----TCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             EEEECCCCcEE-EcccC-CCcceeeEECCCC----CEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence            69999998754 45554 4568999999999    7776555  88899998877655332 322222            


Q ss_pred             -------EEEec-ceeeeeccCCCC-ceeeeeeecCC-----------------------eEEEEecCC---CCcceeEE
Q 005459          397 -------LIFSF-GKCCLNRGVSGM-TYARQVIYGED-----------------------RLLVVQSED---TDELKILH  441 (696)
Q Consensus       397 -------~~~~~-~~~~~s~~~d~~-~~~w~~~~~~~-----------------------~~~~~~~~~---~~~~~w~~  441 (696)
                             ..+++ ++.++..+.|.+ +..|.+.....                       ++.++.-..   ........
T Consensus       169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~  248 (740)
T 4a5s_A          169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ  248 (740)
T ss_dssp             TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEE
T ss_pred             hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEE
Confidence                   56788 888888776655 77777643221                       122222111   10001222


Q ss_pred             eecCeeeecCCCceEEEEEcCCCCEEEEEeCCc----cE-EEEccCCc----eEecCC---ccceeeeE---EEeEeeeC
Q 005459          442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG----LI-LYDIRQKK----WRVFGD---ITQEQKIQ---SKGLLWLG  506 (696)
Q Consensus       442 ~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG----~i-~w~~~sg~----w~~f~~---~~~e~~~~---v~~~~w~~  506 (696)
                      +..|..+.+|...+..++|||||+.++....++    .+ +||+.+|+    .+....   +.++.-+.   .....|.+
T Consensus       249 l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp  328 (740)
T 4a5s_A          249 ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL  328 (740)
T ss_dssp             ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT
T ss_pred             ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC
Confidence            222322334777799999999999777664433    67 99999987    221111   11111111   22567764


Q ss_pred             --cEEE-EEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEE-EEccCCEEEEEEc-----CceEEEEEEEEec
Q 005459          507 --KIIV-VCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIV-MDVYEDYILVTYR-----PFDVHIFHVKLFG  574 (696)
Q Consensus       507 --~~lv-~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~-~~~~~~~llv~~~-----d~~~~l~~~~~~~  574 (696)
                        ..++ ..  .+.++..+|.+|+.+.-....+..   -...+.. +..+++.++..+.     .+...||.+.+.+
T Consensus       329 DG~~l~~~~--s~~~G~~~l~~~~~~~~~~~~lT~---g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g  400 (740)
T 4a5s_A          329 DGNSFYKII--SNEEGYRHICYFQIDKKDCTFITK---GTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLID  400 (740)
T ss_dssp             TSSEEEEEE--ECTTSCEEEEEEETTCSSCEESCC---SSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTE
T ss_pred             CCCEEEEEE--EcCCCceEEEEEECCCCceEeccc---CCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCC
Confidence              3444 33  445566889999875111111110   0111111 1234666665433     2467899887643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.49  E-value=2.2e-12  Score=137.48  Aligned_cols=277  Identities=13%  Similarity=0.008  Sum_probs=161.4

Q ss_pred             EEEcCCCcEEEEEec-CCe--EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459          262 ASIAPEQQILAVGTR-RGV--VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       262 v~~sp~~~~la~g~~-dg~--v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~  338 (696)
                      .+|||||+.||+++. +|.  |.+||+++ ++..+....        |...+..++|||||+.|+.+..++.+.+||+.+
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-g~~~~lt~~--------~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~  111 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT-QVATQLTEG--------RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLAT  111 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTT-CEEEECCCS--------SCBCSSSCEECTTSSEEEEEETTTEEEEEETTT
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCC-CceEEeeeC--------CCCCccceEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            579999999999988 774  77778766 554443333        555566778999999999999999999999998


Q ss_pred             CeeEEEeecccccceecc--cccCCCCCCcccee-----------------------cc--eeeEEEcCCCceEEEEecC
Q 005459          339 CRLMSTIRQISLSSISSP--IVKPNQDCKYEPLM-----------------------SG--TSMMQWDEYGYRLYAIEEG  391 (696)
Q Consensus       339 ~~~~~~l~~~~~~~v~~~--~~sp~~~~~~~~l~-----------------------sg--~~~~~W~~~~~~l~~~~~~  391 (696)
                      ++....+..+ ...+...  .++|++    ..++                       .+  ..+..|++.+++.......
T Consensus       112 g~~~~~~~~~-~~~~~~~~~~~~~dg----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~  186 (388)
T 3pe7_A          112 LEENVVYQVP-AEWVGYGTWVANSDC----TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE  186 (388)
T ss_dssp             CCEEEEEECC-TTEEEEEEEEECTTS----SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE
T ss_pred             Ccceeeeech-hhcccccceeECCCC----CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC
Confidence            8765544443 2222222  236665    3332                       11  3678899888876555432


Q ss_pred             CcceE--EEEec--ceeeeeccCCC----CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCC--CceEEEEEc
Q 005459          392 SSERV--LIFSF--GKCCLNRGVSG----MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN--WPVQHVAAS  461 (696)
Q Consensus       392 ~~~~v--~~~~~--~~~~~s~~~d~----~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~--~~I~~va~s  461 (696)
                       ...+  ..+++  ++.++....++    ...+|.+......                   +..+..+.  ..+...+||
T Consensus       187 -~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------------------~~~l~~~~~~~~~~~~~~s  246 (388)
T 3pe7_A          187 -NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-------------------MRKVKTHAEGESCTHEFWV  246 (388)
T ss_dssp             -SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-------------------CEESCCCCTTEEEEEEEEC
T ss_pred             -CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-------------------eEEeeeCCCCcccccceEC
Confidence             3333  56776  55565444332    3344544321110                   22233333  357889999


Q ss_pred             CCCCEEEEEeCC-c----cE-EEEccCCceEecCCccceeeeE--EEeEeeeC--cEEEEEEee----cCCCeEEEEEee
Q 005459          462 KDGMFLAVAGLH-G----LI-LYDIRQKKWRVFGDITQEQKIQ--SKGLLWLG--KIIVVCNYI----DSSNTYELLFYP  527 (696)
Q Consensus       462 ~dG~~la~ag~d-G----~i-~w~~~sg~w~~f~~~~~e~~~~--v~~~~w~~--~~lv~~~~~----~~~~~~~lr~y~  527 (696)
                      |||++||..+.+ +    .+ +||+.+++.+.+..........  ..+..|.+  ..|+.....    ......+|.+|+
T Consensus       247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d  326 (388)
T 3pe7_A          247 PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN  326 (388)
T ss_dssp             TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred             CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence            999988765542 2    37 9999998765432211111111  11345653  334433111    013456899998


Q ss_pred             CCCCCccceeEEeec-----------CCccEEEEccCCEEEEEE-cCceEEEEEEEEe
Q 005459          528 RYHLDQSSLLCRKSL-----------LAKPIVMDVYEDYILVTY-RPFDVHIFHVKLF  573 (696)
Q Consensus       528 ~~~l~~~~~~~~~~~-----------~~~~l~~~~~~~~llv~~-~d~~~~l~~~~~~  573 (696)
                      .+.-.. ..+.....           ...-+.++++++.|+..+ .++...||.+.+.
T Consensus       327 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~  383 (388)
T 3pe7_A          327 MKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP  383 (388)
T ss_dssp             TTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred             ccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence            752111 11222211           112357889999888744 4678889988864

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.46  E-value=1.5e-12  Score=138.76  Aligned_cols=220  Identities=11%  Similarity=0.070  Sum_probs=138.6

Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE---EEEcCCCcEEEEEe----------------------c
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC---ASIAPEQQILAVGT----------------------R  276 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~---v~~sp~~~~la~g~----------------------~  276 (696)
                      .++|||+.++....+..+.+|+...++..   ..+...+.   ..++|++++++...                      .
T Consensus        87 ~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (388)
T 3pe7_A           87 FLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKP  166 (388)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCC
Confidence            47899999998888888999987765432   23333332   34599999988532                      3


Q ss_pred             CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcC------CcEEEEEccCCeeEEEeeccc
Q 005459          277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS------RGLTVWSVSGCRLMSTIRQIS  349 (696)
Q Consensus       277 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~D------g~v~vW~~~~~~~~~~l~~~~  349 (696)
                      ++.|.+||+.+ ++ ...+..        +...+..++||| ||+.|+....+      ..|.+++..++.. ..+..+.
T Consensus       167 ~~~l~~~d~~~-g~-~~~l~~--------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~  235 (388)
T 3pe7_A          167 CCRLMRVDLKT-GE-STVILQ--------ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHA  235 (388)
T ss_dssp             CEEEEEEETTT-CC-EEEEEE--------ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCC
T ss_pred             cceEEEEECCC-Cc-eEEeec--------CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCC
Confidence            47889999887 44 344444        567799999999 99999887763      3677788776653 3444332


Q ss_pred             c-cceecccccCCCCCCccceecce--------eeEEEcCCCceEEEE--ecCCcceE-----EEEec-ceeeeec----
Q 005459          350 L-SSISSPIVKPNQDCKYEPLMSGT--------SMMQWDEYGYRLYAI--EEGSSERV-----LIFSF-GKCCLNR----  408 (696)
Q Consensus       350 ~-~~v~~~~~sp~~~~~~~~l~sg~--------~~~~W~~~~~~l~~~--~~~~~~~v-----~~~~~-~~~~~s~----  408 (696)
                      . ..+..++|+|++    +.++..+        .+.+|++++++....  ..++....     ..+++ ++.++..    
T Consensus       236 ~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  311 (388)
T 3pe7_A          236 EGESCTHEFWVPDG----SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD  311 (388)
T ss_dssp             TTEEEEEEEECTTS----SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred             CCcccccceECCCC----CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence            2 357788999998    6554322        288999988774332  22211000     14556 5555432    


Q ss_pred             -----cCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC-----------ceEEEEEcCCCCEEEEEeC
Q 005459          409 -----GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW-----------PVQHVAASKDGMFLAVAGL  472 (696)
Q Consensus       409 -----~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-----------~I~~va~s~dG~~la~ag~  472 (696)
                           ..+..+.+|++..+..+                     .+..+..           .+.+++|||||++|+.++.
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~~---------------------~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~  370 (388)
T 3pe7_A          312 SGYKIENDPFLYVFNMKNGTQH---------------------RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD  370 (388)
T ss_dssp             -----CCCCEEEEEETTTTEEE---------------------EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             cccccCCCCEEEEEeccCCceE---------------------EeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence                 23345556664433221                     1222222           4678899999999887764


Q ss_pred             -CccE-EEEc
Q 005459          473 -HGLI-LYDI  480 (696)
Q Consensus       473 -dG~i-~w~~  480 (696)
                       +|.. +|.+
T Consensus       371 ~~g~~~l~~~  380 (388)
T 3pe7_A          371 VHGKPALYLA  380 (388)
T ss_dssp             TTSSCEEEEE
T ss_pred             CCCceeEEEE
Confidence             5666 6654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.46  E-value=7.7e-12  Score=132.46  Aligned_cols=274  Identities=12%  Similarity=0.071  Sum_probs=151.6

Q ss_pred             ceEEEEEeCCcEEEEEc-----------cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec--C
Q 005459           22 QQIIYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS--S   88 (696)
Q Consensus        22 ~~~v~fs~dg~lla~~~-----------~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~--d   88 (696)
                      .+-++|||||+++.++.           +++|.+||.. ....+..+.-..+....-.....++++|||++|+++..  +
T Consensus        52 ~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~-t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~  130 (361)
T 2oiz_A           52 NGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD-KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPA  130 (361)
T ss_dssp             EEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT-TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSS
T ss_pred             CCceEECCCCCEEEEEEecccccccCCCCCEEEEEECc-CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCC
Confidence            34688999999887773           4579999985 55555554322111101122457999999999999874  5


Q ss_pred             cEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeee-ccccccceeEEEeeeCC-CeEEEEecCCcEEEEecCCccccc
Q 005459           89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQ-LPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGA  166 (696)
Q Consensus        89 g~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~v~~~~~~~-~~llv~t~~g~i~~~~w~~~~~~~  166 (696)
                      +.|.+||++..+..                     .. +...... .+ .+.+++ ..++..+.+|.+..+.++......
T Consensus       131 ~~v~v~d~~~~~~~---------------------~~~i~~~~~~-~v-~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~  187 (361)
T 2oiz_A          131 TSIGIVDVAKGDYV---------------------EDVTAAAGCW-SV-IPQPNRPRSFMTICGDGGLLTINLGEDGKVA  187 (361)
T ss_dssp             EEEEEEETTTTEEE---------------------EEEGGGTTEE-EE-EECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred             CeEEEEECCCCcEE---------------------EEEecCCCcc-ee-EEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence            88999998643210                     01 1111110 11 233333 456666777877766554211110


Q ss_pred             eeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCcee--
Q 005459          167 FELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKL--  244 (696)
Q Consensus       167 ~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~--  244 (696)
                      .....       .  .-+..+..                    .+ .+...+.....+..+.+|++++......++.+  
T Consensus       188 ~~~~~-------~--~~~~~~~~--------------------~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~  237 (361)
T 2oiz_A          188 SQSRS-------K--QMFSVKDD--------------------PI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG  237 (361)
T ss_dssp             EEEEC-------C--CCSCTTTS--------------------CB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE
T ss_pred             eeccc-------c--ceEcCCCC--------------------ce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecc
Confidence            00000       0  00000000                    00 00000111111222333433332222222221  


Q ss_pred             -eeeeeccee-cC--CCCeEEEEEcCCCcEEEEEec-----------CCeEEEEEccCCCceeeEEeeccCCCCCCCCCC
Q 005459          245 -AEFIKIDKE-LG--SGDAVCASIAPEQQILAVGTR-----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGP  309 (696)
Q Consensus       245 -~~~~~~~~~-~~--~~~~v~v~~sp~~~~la~g~~-----------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~  309 (696)
                       |........ .+  ....-.++|+|+++.+.++..           +++|.+||+.+ .+.+.++..        +.  
T Consensus       238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~~--------~~--  306 (361)
T 2oiz_A          238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIPG--------RD--  306 (361)
T ss_dssp             EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEEC--------TT--
T ss_pred             cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEec--------CC--
Confidence             111110000 00  011112689999887777654           35899999988 788888887        55  


Q ss_pred             eEEEEECCCCCeEEEEEcCCcEEEEEccCC--eeEEEeecccccceecccccCCC
Q 005459          310 VSCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       310 V~~l~~spdg~~lasg~~Dg~v~vW~~~~~--~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      +..|+|+|||++|+++.. ++|.+||+.++  +.+.++...+. ....++++|++
T Consensus       307 p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~-~P~~~~~~p~G  359 (361)
T 2oiz_A          307 ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAE-ASLQVQFHPVG  359 (361)
T ss_dssp             CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCS-SEEEEEECCCS
T ss_pred             eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCC-CcEEEEecCCC
Confidence            999999999999999887 99999999999  98988855433 35667888876

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.45  E-value=4.7e-12  Score=134.25  Aligned_cols=246  Identities=9%  Similarity=0.017  Sum_probs=149.9

Q ss_pred             CeEEEEEcCCCcEEEEEecCCeEEEEEcc-CCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCe--EEEEE--------
Q 005459          258 DAVCASIAPEQQILAVGTRRGVVELYDLA-ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA--FAVGW--------  326 (696)
Q Consensus       258 ~~v~v~~sp~~~~la~g~~dg~v~vw~~~-~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~--lasg~--------  326 (696)
                      .+..++|+||+++|++++.+ .|.+|+++ + ++........       ..+.+..++|+|||+.  ++++.        
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~-g~~~~~~~~~-------~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~  111 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSP-TEIVHEASHP-------IGGHPRANDADTNTRAIFLLAAKQPPYAVYA  111 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEET-TEEEEEEEEE-------CCSSGGGGCTTSCCEEEEEEECSSTTCCEEE
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECCC-CCEEEeeEee-------cCCCCccEEECCCCCEEEEEEecCCcceecc
Confidence            34459999999999999988 99999997 5 5554333220       1133566899999994  55553        


Q ss_pred             -----cCCcEEEEEcc-CCeeEEEeec---ccccceecccccCCCCCCccceecce----eeEEEcCC-CceEEE--Eec
Q 005459          327 -----KSRGLTVWSVS-GCRLMSTIRQ---ISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEY-GYRLYA--IEE  390 (696)
Q Consensus       327 -----~Dg~v~vW~~~-~~~~~~~l~~---~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~-~~~l~~--~~~  390 (696)
                           .++++++|++. .+++...+..   .+...+.+++|+|++    +.++.+.    .+.+|+.+ ++++..  ...
T Consensus       112 ~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG----~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~  187 (365)
T 1jof_A          112 NPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE----TYLYSADLTANKLWTHRKLASGEVELVGSVD  187 (365)
T ss_dssp             EEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS----SEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred             ceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC----CEEEEEcCCCCEEEEEEECCCCCEEEeeeEe
Confidence                 68999999996 4555444432   123568899999998    6555332    78899987 666532  222


Q ss_pred             --CCcceE--EEEec-ceeeeecc-CCCCceeeeeeecCCeEEEEecCCCCcceeEEe-ecCeeeecCCC------ceEE
Q 005459          391 --GSSERV--LIFSF-GKCCLNRG-VSGMTYARQVIYGEDRLLVVQSEDTDELKILHL-NLPVSYISQNW------PVQH  457 (696)
Q Consensus       391 --~~~~~v--~~~~~-~~~~~s~~-~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~------~I~~  457 (696)
                        .+...+  ++|++ ++.++.++ .++++.+|++.....++..         ....+ .+|..+.+|+.      .+..
T Consensus       188 ~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~~  258 (365)
T 1jof_A          188 APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY---------THHSFPLIPPGIPDRDPETGKGLYRAD  258 (365)
T ss_dssp             CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE---------EEEEEESSCTTCCCBCTTTSSBSEEEE
T ss_pred             cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE---------ccceEEcCCCCcCCccccccccccccc
Confidence              122333  67777 77766555 4678888876432211100         00011 12333344443      5788


Q ss_pred             EE-EcCCCCEEEEEeCCc------cE-EEEcc-CCceEecCCccceeeeEEEeEeee-----CcEEEEEEeecCCCeEEE
Q 005459          458 VA-ASKDGMFLAVAGLHG------LI-LYDIR-QKKWRVFGDITQEQKIQSKGLLWL-----GKIIVVCNYIDSSNTYEL  523 (696)
Q Consensus       458 va-~s~dG~~la~ag~dG------~i-~w~~~-sg~w~~f~~~~~e~~~~v~~~~w~-----~~~lv~~~~~~~~~~~~l  523 (696)
                      ++ |||||++|+++.++.      .+ +|++. +|+.+..............++++.     ++.|++++    .++..|
T Consensus       259 i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~----~~~~~v  334 (365)
T 1jof_A          259 VCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD----DQEGWL  334 (365)
T ss_dssp             EEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC----SSSCEE
T ss_pred             EEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE----cCCCeE
Confidence            99 999999998876543      78 99996 666442110000000012245554     56777762    234689


Q ss_pred             EEeeCC
Q 005459          524 LFYPRY  529 (696)
Q Consensus       524 r~y~~~  529 (696)
                      ++|+.+
T Consensus       335 ~v~~~~  340 (365)
T 1jof_A          335 EIYRWK  340 (365)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999885

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.42  E-value=1e-10  Score=134.07  Aligned_cols=111  Identities=11%  Similarity=0.055  Sum_probs=80.3

Q ss_pred             EEEEeCCcEEEEeecc----------CCceeeeeee------cce--ec-CCCCeEE-EEEcCCCcEEEEEecCC-----
Q 005459          224 FVLYSNGQLMSCSVSK----------KGLKLAEFIK------IDK--EL-GSGDAVC-ASIAPEQQILAVGTRRG-----  278 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d----------~~~~~~~~~~------~~~--~~-~~~~~v~-v~~sp~~~~la~g~~dg-----  278 (696)
                      ++++|||+.+++.+.+          .++.+|+...      ++.  +. .+...+. ++|||||+.||.++.++     
T Consensus       135 ~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~  214 (662)
T 3azo_A          135 PVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPW  214 (662)
T ss_dssp             EEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTT
T ss_pred             cEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCC
Confidence            4588999988887766          4677888765      332  24 4445555 89999999999888664     


Q ss_pred             ---eEEEEEccCCC---ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC--cEEEEEccCCeeE
Q 005459          279 ---VVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR--GLTVWSVSGCRLM  342 (696)
Q Consensus       279 ---~v~vw~~~~~~---~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg--~v~vW~~~~~~~~  342 (696)
                         .|.+||++..+   ........        |.+.+..++|||||+.++++..|+  .|.+|++.+++..
T Consensus       215 ~~~~i~~~d~~~~g~~~~~~~l~~~--------~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~  278 (662)
T 3azo_A          215 EGTELKTARVTEDGRFADTRTLLGG--------PEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT  278 (662)
T ss_dssp             TCEEEEEEEECTTSCEEEEEEEEEE--------TTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE
T ss_pred             CCcEEEEEEECCCCcccccEEeCCC--------CCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee
Confidence               79999998324   33333334        678899999999999888888888  4555566566543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.38  E-value=6.6e-12  Score=133.79  Aligned_cols=189  Identities=10%  Similarity=0.064  Sum_probs=112.7

Q ss_pred             EEEcCCCcEEEEE-----ecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcC------C
Q 005459          262 ASIAPEQQILAVG-----TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS------R  329 (696)
Q Consensus       262 v~~sp~~~~la~g-----~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~D------g  329 (696)
                      ++++|+++.++.+     ..+..|.+||+.+ ++... +..        +...+..++|+| ||+.|+..+.+      .
T Consensus       147 ~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~-g~~~~-~~~--------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~  216 (396)
T 3c5m_A          147 RDWQPLTSWEKFAEFYHTNPTCRLIKVDIET-GELEV-IHQ--------DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDA  216 (396)
T ss_dssp             GGCCCCCSHHHHHHHHHTCCCEEEEEEETTT-CCEEE-EEE--------ESSCEEEEEEETTEEEEEEEEECSCSSSCSC
T ss_pred             cccCCCCcceeeeeeccCCCcceEEEEECCC-CcEEe-ecc--------CCcccccceECCCCCCEEEEEecCCCCCCCc
Confidence            4578898888765     3567899999876 44433 334        567799999999 89888877654      3


Q ss_pred             cEEEEEccCCeeEEEeeccc-ccceecccccCCCCCCccceecce--------eeEEEcCCCceEEEEecCCcceEEEEe
Q 005459          330 GLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQDCKYEPLMSGT--------SMMQWDEYGYRLYAIEEGSSERVLIFS  400 (696)
Q Consensus       330 ~v~vW~~~~~~~~~~l~~~~-~~~v~~~~~sp~~~~~~~~l~sg~--------~~~~W~~~~~~l~~~~~~~~~~v~~~~  400 (696)
                      .|.+|++.++... .+..+. ...+..++|+|++    +.++...        .+.+|+..+++........... ..++
T Consensus       217 ~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg----~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s  290 (396)
T 3c5m_A          217 RMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDG----SAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMS  290 (396)
T ss_dssp             CCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTS----SCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEE
T ss_pred             eEEEEECCCCcee-EeeccCCCccccceEECCCC----CEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCcc
Confidence            5888888776533 333221 2357788999998    6554332        3888999877654433221111 4454


Q ss_pred             c--ceeeeeccC----------------CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC---------
Q 005459          401 F--GKCCLNRGV----------------SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW---------  453 (696)
Q Consensus       401 ~--~~~~~s~~~----------------d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~---------  453 (696)
                      +  ++.++..+.                +..+.+|++..+..                     ..+..+..         
T Consensus       291 ~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~---------------------~~l~~~~~~~~~~~~~~  349 (396)
T 3c5m_A          291 NFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA---------------------QKLCKHSTSWDVLDGDR  349 (396)
T ss_dssp             CSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC---------------------CEEEECCCCCCCBTTBS
T ss_pred             CCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce---------------------EEccCCCCccccccccc
Confidence            4  444444321                23344444332221                     11222222         


Q ss_pred             --ceEEEEEcCCCCEEEEEeC-CccE-EEE--ccCCceEe
Q 005459          454 --PVQHVAASKDGMFLAVAGL-HGLI-LYD--IRQKKWRV  487 (696)
Q Consensus       454 --~I~~va~s~dG~~la~ag~-dG~i-~w~--~~sg~w~~  487 (696)
                        .+...+|+|||++|+.++. +|.. +|.  +.++++++
T Consensus       350 ~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~  389 (396)
T 3c5m_A          350 QITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHL  389 (396)
T ss_dssp             STTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC--
T ss_pred             cCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccccc
Confidence              2456789999999988775 4554 554  45665544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.37  E-value=6.8e-11  Score=125.91  Aligned_cols=271  Identities=11%  Similarity=-0.053  Sum_probs=157.5

Q ss_pred             EEEcCCCcEEEEEecC---CeEEEEEccCCCceeeEEeeccCCCCCCCCCC-eEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459          262 ASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGP-VSCIAWTPDNSAFAVGWKSRGLTVWSVS  337 (696)
Q Consensus       262 v~~sp~~~~la~g~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~-V~~l~~spdg~~lasg~~Dg~v~vW~~~  337 (696)
                      ++|||||+.||....+   ..|.+|++++ ++.. .+..        +... ...+.|||||+.|+.++.++.+.+|++.
T Consensus        41 ~~~SpdG~~l~~~~~~~g~~~l~~~d~~~-~~~~-~l~~--------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~  110 (396)
T 3c5m_A           41 KCFTQDGKKLLFAGDFDGNRNYYLLNLET-QQAV-QLTE--------GKGDNTFGGFISTDERAFFYVKNELNLMKVDLE  110 (396)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTT-TEEE-ECCC--------SSCBCTTTCEECTTSSEEEEEETTTEEEEEETT
T ss_pred             CcCCCCCCEEEEEEecCCCceEEEEECCC-CcEE-Eeec--------CCCCccccceECCCCCEEEEEEcCCcEEEEECC
Confidence            7899999999887654   3677888775 4432 2322        2223 3347899999999999999999999998


Q ss_pred             CCeeEEEeecccccceec-------------------ccccCCCCCCccceec------c--eeeEEEcCCCceEEEEec
Q 005459          338 GCRLMSTIRQISLSSISS-------------------PIVKPNQDCKYEPLMS------G--TSMMQWDEYGYRLYAIEE  390 (696)
Q Consensus       338 ~~~~~~~l~~~~~~~v~~-------------------~~~sp~~~~~~~~l~s------g--~~~~~W~~~~~~l~~~~~  390 (696)
                      +++.......+ ......                   +.++|++    +.++.      .  ..+..|++.+++......
T Consensus       111 ~~~~~~~~~~~-~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg----~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~  185 (396)
T 3c5m_A          111 TLEEQVIYTVD-EEWKGYGTWVANSDCTKLVGIEILKRDWQPLT----SWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ  185 (396)
T ss_dssp             TCCEEEEEECC-TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC----SHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE
T ss_pred             CCCcEEEEecc-cccCCCCCEEEeccCCccccccccccccCCCC----cceeeeeeccCCCcceEEEEECCCCcEEeecc
Confidence            88755444432 111111                   5677876    43321      1  277889998877655543


Q ss_pred             CCcceE--EEEec--ceeeeeccCCCC----ceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecC--CCceEEEEE
Q 005459          391 GSSERV--LIFSF--GKCCLNRGVSGM----TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ--NWPVQHVAA  460 (696)
Q Consensus       391 ~~~~~v--~~~~~--~~~~~s~~~d~~----~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~I~~va~  460 (696)
                       +...+  ..+++  ++.++..+.+..    ..+|.+......                   +..+..+  .+.+..++|
T Consensus       186 -~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------------------~~~l~~~~~~~~~~~~~~  245 (396)
T 3c5m_A          186 -DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-------------------VRKIKEHAEGESCTHEFW  245 (396)
T ss_dssp             -ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-------------------CEESSCCCTTEEEEEEEE
T ss_pred             -CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-------------------eeEeeccCCCccccceEE
Confidence             23333  55666  554554433322    233433221110                   1111122  335888999


Q ss_pred             cCCCCEEEEEeCC-----ccE-EEEccCCceEecCCccceeeeEEEeEeeeC---cEEEEEEee-----------cCCCe
Q 005459          461 SKDGMFLAVAGLH-----GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG---KIIVVCNYI-----------DSSNT  520 (696)
Q Consensus       461 s~dG~~la~ag~d-----G~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~---~~lv~~~~~-----------~~~~~  520 (696)
                      ||||++|+.++.+     +.+ +||+.+++.+......   .  .. ..|.+   ..++.+...           .....
T Consensus       246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~  319 (396)
T 3c5m_A          246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP---P--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND  319 (396)
T ss_dssp             CTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---S--EE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred             CCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC---C--CC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence            9999998887654     447 9999988755432111   1  11 66753   444443210           01234


Q ss_pred             EEEEEeeCCCCCccceeEEeec-----------CCccEEEEccCCEEEEEEc-CceEEEEEEEEec
Q 005459          521 YELLFYPRYHLDQSSLLCRKSL-----------LAKPIVMDVYEDYILVTYR-PFDVHIFHVKLFG  574 (696)
Q Consensus       521 ~~lr~y~~~~l~~~~~~~~~~~-----------~~~~l~~~~~~~~llv~~~-d~~~~l~~~~~~~  574 (696)
                      .+|.+|+.+.-... .+.....           ......++++++.++..+. ++...||.+.+.+
T Consensus       320 ~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~  384 (396)
T 3c5m_A          320 PFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPE  384 (396)
T ss_dssp             CEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCT
T ss_pred             CcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcc
Confidence            68888987511111 2222211           0112567888888887553 5678899888754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.36  E-value=1.2e-10  Score=121.38  Aligned_cols=234  Identities=10%  Similarity=0.014  Sum_probs=151.0

Q ss_pred             EEEEeCCcEEEEeecc------------------------CCceeeeeeeccee----cCCC-CeEEEEEcCCCcEEEEE
Q 005459          224 FVLYSNGQLMSCSVSK------------------------KGLKLAEFIKIDKE----LGSG-DAVCASIAPEQQILAVG  274 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d------------------------~~~~~~~~~~~~~~----~~~~-~~v~v~~sp~~~~la~g  274 (696)
                      ++++++|+++++...+                        +++.+||..+++..    .++. .+..++++|+|+++++.
T Consensus        29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d  108 (329)
T 3fvz_A           29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTD  108 (329)
T ss_dssp             EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEE
T ss_pred             EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEE
Confidence            4477888888877666                        35677776544332    1232 34449999999999999


Q ss_pred             ecCCeEEEEEccCCCceeeEEeecc-CCCCCCCCCCeEEEEECC-CCCeEEEEE-cCCcEEEEEccCCeeEEEeeccc--
Q 005459          275 TRRGVVELYDLAESASLIRTVSLYD-WGYSMDDTGPVSCIAWTP-DNSAFAVGW-KSRGLTVWSVSGCRLMSTIRQIS--  349 (696)
Q Consensus       275 ~~dg~v~vw~~~~~~~~~~~~~~~~-~~~~~~h~g~V~~l~~sp-dg~~lasg~-~Dg~v~vW~~~~~~~~~~l~~~~--  349 (696)
                      ..++.|++|+.+.....+.++.... .+...++......|+++| +|+.+++.+ .++.|++|+. .+..+.++...+  
T Consensus       109 ~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~  187 (329)
T 3fvz_A          109 VALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSG  187 (329)
T ss_dssp             TTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEEECEECCS
T ss_pred             CCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCC
Confidence            9999999999764212455553211 111123556789999999 888888886 6899999995 455566664322  


Q ss_pred             -------ccceecccccCC-CCCCccceecce---eeEEEcCCCceEEEEec--CCcceE--EEEecceeee-------e
Q 005459          350 -------LSSISSPIVKPN-QDCKYEPLMSGT---SMMQWDEYGYRLYAIEE--GSSERV--LIFSFGKCCL-------N  407 (696)
Q Consensus       350 -------~~~v~~~~~sp~-~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~--~~~~~v--~~~~~~~~~~-------s  407 (696)
                             ......++++|+ +    ..+++..   ++..|+.++++++....  .+...+  +.++++..+.       +
T Consensus       188 ~~~~~~~~~~p~gia~d~~~g----~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~  263 (329)
T 3fvz_A          188 SSPRPGQFSVPHSLALVPHLD----QLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFG  263 (329)
T ss_dssp             SSCCTTEESCEEEEEEETTTT----EEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTT
T ss_pred             CCCCCcccCCCcEEEEECCCC----EEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEec
Confidence                   123678889988 5    6666543   78999998777777663  233344  3344422222       2


Q ss_pred             ccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee---ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459          408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY---ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       408 ~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~---~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s  482 (696)
                      ...+.++.+|+...++.                    ...+   .++......++++|||+.+++...++.| +|++..
T Consensus       264 ~~~~~~v~~~~~~~g~~--------------------~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          264 DQEPVQGFVMNFSSGEI--------------------IDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CSCCCCEEEEETTTCCE--------------------EEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             cCCCcEEEEEEcCCCeE--------------------EEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            22333555555443332                    1122   2344567899999999888888888999 998764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.31  E-value=1.6e-10  Score=120.62  Aligned_cols=267  Identities=10%  Similarity=0.030  Sum_probs=157.4

Q ss_pred             cccceeeeCCCCCCCCCceEEEEEeCCcEEEEEccC-------------------------eEEEeecCCceeeEEEeec
Q 005459            5 YGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPC-------------------------HIELWSSSQHKVRLGKYKR   59 (696)
Q Consensus         5 ~g~p~~~~~~~~~~~~~~~~v~fs~dg~lla~~~~~-------------------------~v~iW~~~~~~~~l~~~~r   59 (696)
                      .-||+.- ...    +...-|+|+|+|+++++...+                         +|.+||.. .+..+.....
T Consensus        14 ~~wp~~~-~~l----~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~   87 (329)
T 3fvz_A           14 LDWPGVY-LLP----GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN-NAEILQSSGK   87 (329)
T ss_dssp             TTCGGGG-CCC----SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT-TCCEEEEECT
T ss_pred             cCCchhc-eec----CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC-CCeEEeccCC
Confidence            3588752 222    235558999999999887544                         69999984 3433332211


Q ss_pred             ChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCccc-ccCCCCCCCceeeeeeEEEeeeccccccceeEE--
Q 005459           60 DSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI-QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--  136 (696)
Q Consensus        60 ~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--  136 (696)
                           ........++++|||+++++.+.++.|++|+........ ........+.              -........  
T Consensus        88 -----~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~--------------~~~~~~~P~~i  148 (329)
T 3fvz_A           88 -----NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGS--------------DQNHFCQPTDV  148 (329)
T ss_dssp             -----TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCC--------------STTCCSSEEEE
T ss_pred             -----CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCC--------------CccccCCCcEE
Confidence                 122345689999999988888888999999875331111 1110000000              000111122  


Q ss_pred             EeeeCCCeEEEEe--cCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEE
Q 005459          137 NIVSDNKHMLLGL--SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL  214 (696)
Q Consensus       137 ~~~~~~~~llv~t--~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~  214 (696)
                      ++.+++..++++.  .++.|++++.++.........               ....            .....+-..... 
T Consensus       149 a~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~---------------g~~~------------~~~~~~~~~p~g-  200 (329)
T 3fvz_A          149 AVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEE---------------SSGS------------SPRPGQFSVPHS-  200 (329)
T ss_dssp             EECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEE---------------CCSS------------SCCTTEESCEEE-
T ss_pred             EEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccC---------------CCCC------------CCCCcccCCCcE-
Confidence            3444345566665  478888876544332211000               0000            000000111222 


Q ss_pred             EEccCcceEEEEEeC-CcEEEEeeccCCceeeeeeeccee-----cCCCCeEE-EEEcC------CCcEEEEEecCCeEE
Q 005459          215 ELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAP------EQQILAVGTRRGVVE  281 (696)
Q Consensus       215 ~~~~~~~~~~~~s~d-G~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~-v~~sp------~~~~la~g~~dg~v~  281 (696)
                               ++++++ |+++++...+..++.|+..+++..     ..+..... ++++|      +++..++...+.+|+
T Consensus       201 ---------ia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~  271 (329)
T 3fvz_A          201 ---------LALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGF  271 (329)
T ss_dssp             ---------EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEE
T ss_pred             ---------EEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEE
Confidence                     457888 888888878888999987644332     23444455 89999      333333334456999


Q ss_pred             EEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459          282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC  339 (696)
Q Consensus       282 vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~  339 (696)
                      +|+..+ ++.+..+..     ..++...+..|+++|||+.+++...++.|++|++.+.
T Consensus       272 ~~~~~~-g~~~~~~~~-----~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          272 VMNFSS-GEIIDVFKP-----VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EEETTT-CCEEEEECC-----SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             EEEcCC-CeEEEEEcC-----CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            999887 777776642     0126677999999999998999999999999998754

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.30  E-value=2e-10  Score=131.65  Aligned_cols=236  Identities=11%  Similarity=0.078  Sum_probs=141.3

Q ss_pred             cCCCcE-EEEEec-CCeEEEEEccCCC-ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC----------CcE
Q 005459          265 APEQQI-LAVGTR-RGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS----------RGL  331 (696)
Q Consensus       265 sp~~~~-la~g~~-dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D----------g~v  331 (696)
                      ||||+. ||.++. +..|.+++++..+ .....+....   ...|...+.+++|||||+.|++++.|          ..|
T Consensus        87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~---~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i  163 (662)
T 3azo_A           87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS---AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFL  163 (662)
T ss_dssp             CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC---CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEE
T ss_pred             ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc---cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEE
Confidence            499998 887654 4455555543001 3333333200   00156678999999999999999887          589


Q ss_pred             EEEEccC------CeeEEEee-cccccceecccccCCCCCCccceecc-----------eeeEEEcCC-Cc---eEEEEe
Q 005459          332 TVWSVSG------CRLMSTIR-QISLSSISSPIVKPNQDCKYEPLMSG-----------TSMMQWDEY-GY---RLYAIE  389 (696)
Q Consensus       332 ~vW~~~~------~~~~~~l~-~~~~~~v~~~~~sp~~~~~~~~l~sg-----------~~~~~W~~~-~~---~l~~~~  389 (696)
                      .+|++.+      +.. ..+. .+ ...+..++|+||+    +.++..           ..+.+|+.+ ++   +.....
T Consensus       164 ~~~~~~~~~~~~~~~~-~~l~~~~-~~~~~~~~~SpDG----~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~  237 (662)
T 3azo_A          164 AAVPLDGSAAADRSAV-RELSDDA-HRFVTGPRLSPDG----RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL  237 (662)
T ss_dssp             EEEETTSTTTTCGGGS-EESSCSC-SSEECCCEECTTS----SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred             EEEECCCCccccCCce-eEEEecC-CCcccCceECCCC----CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence            9999988      543 3444 43 4568889999999    666533           257888888 46   555555


Q ss_pred             cCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeE-EEEecCCCCcceeEEeecCeeeecCCCc--eEEEEEcCC
Q 005459          390 EGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRL-LVVQSEDTDELKILHLNLPVSYISQNWP--VQHVAASKD  463 (696)
Q Consensus       390 ~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~--I~~va~s~d  463 (696)
                      .++...+  ..+++ ++.+++++.++..++|.+.....+. .+..+             ........|.  +.+++|+|+
T Consensus       238 ~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~-------------~~~~~~p~w~~~~~~~~~~~~  304 (662)
T 3azo_A          238 GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR-------------EEEFAGPLWTPGMRWFAPLAN  304 (662)
T ss_dssp             EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC-------------SSBSSCCCCSTTCCSEEECTT
T ss_pred             CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc-------------cccccCccccccCceEeEeCC
Confidence            4444555  55666 7777777778766666554211111 00000             0000001111  567999999


Q ss_pred             CCEEEEEeCCccE-EE--EccCCceEecCCccceeeeEEEeE-eeeCcEEEEEEeecCCCeEEEEEeeC
Q 005459          464 GMFLAVAGLHGLI-LY--DIRQKKWRVFGDITQEQKIQSKGL-LWLGKIIVVCNYIDSSNTYELLFYPR  528 (696)
Q Consensus       464 G~~la~ag~dG~i-~w--~~~sg~w~~f~~~~~e~~~~v~~~-~w~~~~lv~~~~~~~~~~~~lr~y~~  528 (696)
                      |+++++++. |.. +|  |..+++.+.+...  +.  .+..+ ...++.++..+.. .+...+|..++.
T Consensus       305 ~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~~--~~--~~~~~~s~~~~~~~~~~~~-~~~~~~i~~~d~  367 (662)
T 3azo_A          305 GLIAVVHGK-GAAVLGILDPESGELVDAAGP--WT--EWAATLTVSGTRAVGVAAS-PRTAYEVVELDT  367 (662)
T ss_dssp             SCEEEEEBS-SSCEEEEEETTTTEEEECCSS--CC--EEEEEEEEETTEEEEEEEE-TTEEEEEEEEET
T ss_pred             CEEEEEEEc-CccEEEEEECCCCcEEEecCC--CC--eEEEEEecCCCEEEEEEcC-CCCCCEEEEEEC
Confidence            999999999 988 99  6667776655322  21  24455 6667666554332 233345555554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.29  E-value=5.8e-10  Score=113.36  Aligned_cols=222  Identities=10%  Similarity=0.069  Sum_probs=143.6

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecce--e------cCCCCeEE-EEE-cCCCcEEEEEec-CCeEEEEEccCCCcee
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK--E------LGSGDAVC-ASI-APEQQILAVGTR-RGVVELYDLAESASLI  292 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~--~------~~~~~~v~-v~~-sp~~~~la~g~~-dg~v~vw~~~~~~~~~  292 (696)
                      ++++++|+++++...++.+..|+......  +      .++....+ +++ .++++++++... ++.|++|+. + ++.+
T Consensus        35 v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~-g~~~  112 (286)
T 1q7f_A           35 VAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y-GQFV  112 (286)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T-SCEE
T ss_pred             EEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-C-CcEE
Confidence            34678888888777777888887542111  1      12223344 899 578888887754 899999994 4 5555


Q ss_pred             eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeec-ccccceecccccCCCCCCccceec
Q 005459          293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMS  371 (696)
Q Consensus       293 ~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~-~~~~~v~~~~~sp~~~~~~~~l~s  371 (696)
                      ..+..       .+...+..++++|||+.+++...++.|.+|+..+. .+.++.. .+...+..++++|++    +.+++
T Consensus       113 ~~~~~-------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~p~~i~~~~~g----~l~v~  180 (286)
T 1q7f_A          113 RKFGA-------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKFGCSKHLEFPNGVVVNDKQ----EIFIS  180 (286)
T ss_dssp             EEECT-------TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEECTTTCSSEEEEEECSSS----EEEEE
T ss_pred             EEecC-------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EEEEeCCCCccCCcEEEEECCCC----CEEEE
Confidence            55533       14457899999999998888888899999997654 4555542 223457889999988    76665


Q ss_pred             ce---eeEEEcCCCceEEEEecCC--cceE--EEEec-ceeeeeccCCC-CceeeeeeecCCeEEEEecCCCCcceeEEe
Q 005459          372 GT---SMMQWDEYGYRLYAIEEGS--SERV--LIFSF-GKCCLNRGVSG-MTYARQVIYGEDRLLVVQSEDTDELKILHL  442 (696)
Q Consensus       372 g~---~~~~W~~~~~~l~~~~~~~--~~~v--~~~~~-~~~~~s~~~d~-~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~  442 (696)
                      ..   .+..|+..+.. +.....+  ....  ++++. ++..++...++ .+.+|+. .+..                  
T Consensus       181 ~~~~~~i~~~~~~g~~-~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~------------------  240 (286)
T 1q7f_A          181 DNRAHCVKVFNYEGQY-LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQL------------------  240 (286)
T ss_dssp             EGGGTEEEEEETTCCE-EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCE------------------
T ss_pred             ECCCCEEEEEcCCCCE-EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCE------------------
Confidence            43   78899986543 3333222  2233  45555 55555655554 6766662 1211                  


Q ss_pred             ecCeeeecC--CCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459          443 NLPVSYISQ--NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       443 ~~~~~~~~~--~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s  482 (696)
                        ...+..+  ...+..++++|||+.+++ +.++.+ +|+...
T Consensus       241 --~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          241 --ISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             --EEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             --EEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence              1122222  223678999999987666 678999 998754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.29  E-value=5.9e-10  Score=116.59  Aligned_cols=232  Identities=13%  Similarity=0.133  Sum_probs=136.2

Q ss_pred             CCcEEEEeec---------cCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecC---Ce--EEEEEccCCCceeeE
Q 005459          229 NGQLMSCSVS---------KKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRR---GV--VELYDLAESASLIRT  294 (696)
Q Consensus       229 dG~~~~~~~~---------d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~d---g~--v~vw~~~~~~~~~~~  294 (696)
                      ||+.++....         +..+.+|+...++...- .....++|||||+.||..+.+   +.  |.+|+++. ++..+.
T Consensus        23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~-g~~~~l  100 (347)
T 2gop_A           23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET-LSSKKI  100 (347)
T ss_dssp             ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT-TEEEEE
T ss_pred             CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC-CceEEE
Confidence            7876665432         33455666544322110 233448999999999988764   34  66667665 444443


Q ss_pred             EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC---------------------------CcEEEEEccCCeeEEEeec
Q 005459          295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---------------------------RGLTVWSVSGCRLMSTIRQ  347 (696)
Q Consensus       295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D---------------------------g~v~vW~~~~~~~~~~l~~  347 (696)
                      ...         .+ +..++|||||+.|+.++.+                           ..|.+|++.+++.+..+..
T Consensus       101 ~~~---------~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~  170 (347)
T 2gop_A          101 LEA---------KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK  170 (347)
T ss_dssp             EEE---------SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE
T ss_pred             EcC---------CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC
Confidence            333         34 9999999999999988743                           5689999988876455554


Q ss_pred             ccccceecccccCCCCCCccceecc------------eeeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCC--
Q 005459          348 ISLSSISSPIVKPNQDCKYEPLMSG------------TSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSG--  412 (696)
Q Consensus       348 ~~~~~v~~~~~sp~~~~~~~~l~sg------------~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~--  412 (696)
                        . .+..+.|+|++     .++++            ..+..++  +++......+  ..+..+++ ++.++..+.+.  
T Consensus       171 --~-~~~~~~~spdg-----~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~--~~~~~~spdg~~l~~~~~~~~~  238 (347)
T 2gop_A          171 --P-RFSSGIWHRDK-----IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK--VSFYAVDSDGERILLYGKPEKK  238 (347)
T ss_dssp             --E-TTCEEEEETTE-----EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE--ESEEEEEECSSCEEEEECCSSS
T ss_pred             --C-CcccccCCCCe-----EEEEEecccccccccccccEEEeC--CCceEEeccC--cceeeECCCCCEEEEEEccccC
Confidence              2 57788898885     22222            1233344  4444333222  33433455 55555444332  


Q ss_pred             ----CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEE-EEEcCCCCEEEEEeCCccE-EEEccCCceE
Q 005459          413 ----MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH-VAASKDGMFLAVAGLHGLI-LYDIRQKKWR  486 (696)
Q Consensus       413 ----~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~-va~s~dG~~la~ag~dG~i-~w~~~sg~w~  486 (696)
                          ...+|.+. +..                   ......++...+.. ++|+ || ++++++.+|.. +| +.+++.+
T Consensus       239 ~~~~~~~l~~~d-~~~-------------------~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~  295 (347)
T 2gop_A          239 YMSEHNKLYIYD-GKE-------------------VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK  295 (347)
T ss_dssp             CCCSSCEEEEEC-SSC-------------------EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE
T ss_pred             CccccceEEEEC-CCc-------------------eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE
Confidence                12222222 111                   01112245667886 9999 99 99999999999 99 8766544


Q ss_pred             ecCCccceeeeEEEeEeeeCcEEEEE
Q 005459          487 VFGDITQEQKIQSKGLLWLGKIIVVC  512 (696)
Q Consensus       487 ~f~~~~~e~~~~v~~~~w~~~~lv~~  512 (696)
                      ....    ....+.++.|.+ .++.+
T Consensus       296 ~~~~----~~~~v~~~~~s~-~~~~~  316 (347)
T 2gop_A          296 PIAK----GRHWIMGFDVDE-IVVYL  316 (347)
T ss_dssp             EEEC----SSSEEEEEEESS-SEEEE
T ss_pred             EEec----CCCeEEeeeeeC-cEEEE
Confidence            3221    123466788877 44443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.28  E-value=7.4e-10  Score=112.60  Aligned_cols=235  Identities=9%  Similarity=0.045  Sum_probs=139.8

Q ss_pred             EEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEE-cCCCcEEEEEec-CcEEEEEEEEecC
Q 005459           24 IIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVW-SPDTKLIAVVTS-SLYLHIFKVQITE  100 (696)
Q Consensus        24 ~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~w-sPDg~~lav~t~-dg~l~l~~l~~~~  100 (696)
                      -++++++|+++++. .++.|.+|+.. . ..+..+........+......+++ .++++++++... ++.|++|+.. +.
T Consensus        34 ~v~~~~~g~l~v~~~~~~~i~~~d~~-g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g~  110 (286)
T 1q7f_A           34 GVAVNAQNDIIVADTNNHRIQIFDKE-G-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQ  110 (286)
T ss_dssp             EEEECTTCCEEEEEGGGTEEEEECTT-S-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SC
T ss_pred             eEEECCCCCEEEEECCCCEEEEECCC-C-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-Cc
Confidence            37899999988876 46789999985 3 233333211000011234568999 578877777644 7889999832 21


Q ss_pred             cccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCCeEEEE-ecCCcEEEEecCCccccceeeccCCCCCc
Q 005459          101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLG-LSDGSLYSISWKGEFYGAFELVHSSNDSS  177 (696)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~~llv~-t~~g~i~~~~w~~~~~~~~~~~~~p~~~~  177 (696)
                      .......                      .....+.  ++.++++ ++++ ..++.|.+++.++.......         
T Consensus       111 ~~~~~~~----------------------~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~~~~~~~---------  158 (286)
T 1q7f_A          111 FVRKFGA----------------------TILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGNVLHKFG---------  158 (286)
T ss_dssp             EEEEECT----------------------TTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSCEEEEEE---------
T ss_pred             EEEEecC----------------------ccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCCEEEEeC---------
Confidence            1000000                      0001122  3344554 5554 45678887654432211110         


Q ss_pred             ccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc--eec-
Q 005459          178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID--KEL-  254 (696)
Q Consensus       178 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~--~~~-  254 (696)
                                                .......+..          ++++++|+++++...++.+.+|+.....  .+. 
T Consensus       159 --------------------------~~~~~~~p~~----------i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~  202 (286)
T 1q7f_A          159 --------------------------CSKHLEFPNG----------VVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGG  202 (286)
T ss_dssp             --------------------------CTTTCSSEEE----------EEECSSSEEEEEEGGGTEEEEEETTCCEEEEESC
T ss_pred             --------------------------CCCccCCcEE----------EEECCCCCEEEEECCCCEEEEEcCCCCEEEEEcc
Confidence                                      0001112333          4477888888877777888888753211  111 


Q ss_pred             -CC-CCeEEEEEcCCCcEEEEEecCC-eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459          255 -GS-GDAVCASIAPEQQILAVGTRRG-VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL  331 (696)
Q Consensus       255 -~~-~~~v~v~~sp~~~~la~g~~dg-~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v  331 (696)
                       ++ ..+..++++|+|+++++...++ .|++|+.+  ++.+..+....      ....+.+++++|||+.+++ +.|+.|
T Consensus       203 ~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~------~~~~~~~i~~~~~g~l~vs-~~~~~v  273 (286)
T 1q7f_A          203 EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKV------KHAQCFDVALMDDGSVVLA-SKDYRL  273 (286)
T ss_dssp             TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESS------CCSCEEEEEEETTTEEEEE-ETTTEE
T ss_pred             CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccC------CCCcceeEEECCCCcEEEE-CCCCeE
Confidence             22 2344599999999999988886 99999954  56666666510      2234789999999987777 578999


Q ss_pred             EEEEccC
Q 005459          332 TVWSVSG  338 (696)
Q Consensus       332 ~vW~~~~  338 (696)
                      ++|++..
T Consensus       274 ~v~~~~~  280 (286)
T 1q7f_A          274 YIYRYVQ  280 (286)
T ss_dssp             EEEECSC
T ss_pred             EEEEccc
Confidence            9998754

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.28  E-value=1.1e-10  Score=134.91  Aligned_cols=234  Identities=8%  Similarity=-0.065  Sum_probs=147.6

Q ss_pred             EEEEeCCcEEEEeec-----cCCceeeeeeeccee-cCCCCe---EEEEEcCCCcEEEEEecCCe-------------EE
Q 005459          224 FVLYSNGQLMSCSVS-----KKGLKLAEFIKIDKE-LGSGDA---VCASIAPEQQILAVGTRRGV-------------VE  281 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~-----d~~~~~~~~~~~~~~-~~~~~~---v~v~~sp~~~~la~g~~dg~-------------v~  281 (696)
                      ..++|||+.++.+..     +.++++||..+++.. ..+...   ..++|+|||+.|+.++.|..             |+
T Consensus       126 ~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~  205 (695)
T 2bkl_A          126 WAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR  205 (695)
T ss_dssp             EEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred             EEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE
Confidence            457889998875443     357889998776554 322222   24899999999999998876             99


Q ss_pred             EEEccCCCc-eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC----cEEEEEccCCeeEEEeecccccceecc
Q 005459          282 LYDLAESAS-LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR----GLTVWSVSGCRLMSTIRQISLSSISSP  356 (696)
Q Consensus       282 vw~~~~~~~-~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg----~v~vW~~~~~~~~~~l~~~~~~~v~~~  356 (696)
                      +|++.+... ........      +|...+..++|||||++|+.++.++    .|.+|+..++. ...+..+ ...+..+
T Consensus       206 ~~~l~t~~~~~~lv~~~~------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~-~~~~~~~  277 (695)
T 2bkl_A          206 YHTLGTEPSKDTVVHERT------GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKG-VGAKYEV  277 (695)
T ss_dssp             EEETTSCGGGCEEEECCC------CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEEC-SSCCEEE
T ss_pred             EEECCCCchhceEEEecC------CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecC-CCceEEE
Confidence            999987321 11222221      1567899999999999999888766    67777765554 3334433 2233444


Q ss_pred             cccCCCCCCcccee-cc-----eeeEEEcCCCceE---EEEecCC-cceEEEEec--ceeeeeccCCCCceeeeeeecCC
Q 005459          357 IVKPNQDCKYEPLM-SG-----TSMMQWDEYGYRL---YAIEEGS-SERVLIFSF--GKCCLNRGVSGMTYARQVIYGED  424 (696)
Q Consensus       357 ~~sp~~~~~~~~l~-sg-----~~~~~W~~~~~~l---~~~~~~~-~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~  424 (696)
                      .+ |++    ..++ +.     ..+..|+.++++.   ......+ ...+..+.+  ++.+++...|+..++|.+.....
T Consensus       278 ~~-~~g----~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~  352 (695)
T 2bkl_A          278 HA-WKD----RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGK  352 (695)
T ss_dssp             EE-ETT----EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCC
T ss_pred             Ee-cCC----cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCC
Confidence            44 555    3222 11     2678888876542   2223232 334544444  66777888888888887653222


Q ss_pred             eEEEEecCCCCcceeEEeecCeeeecC-CCceEEEEEcCCCCEEEEEeC----CccE-EEEccCCceEecC
Q 005459          425 RLLVVQSEDTDELKILHLNLPVSYISQ-NWPVQHVAASKDGMFLAVAGL----HGLI-LYDIRQKKWRVFG  489 (696)
Q Consensus       425 ~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~I~~va~s~dG~~la~ag~----dG~i-~w~~~sg~w~~f~  489 (696)
                      .                   ...+..+ ...|..++++|||+.++....    .+.+ +||+.+++.+++.
T Consensus       353 ~-------------------~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~  404 (695)
T 2bkl_A          353 P-------------------VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA  404 (695)
T ss_dssp             E-------------------EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred             e-------------------eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence            1                   1112222 455777889999988874433    4778 9999998876654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.25  E-value=2.6e-09  Score=112.85  Aligned_cols=281  Identities=12%  Similarity=0.032  Sum_probs=161.1

Q ss_pred             cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec----------CcEEEEEEEEecCcccccCCC
Q 005459           39 PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----------SLYLHIFKVQITEKSIQIGGK  108 (696)
Q Consensus        39 ~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~----------dg~l~l~~l~~~~~~~~~~~~  108 (696)
                      +++|++||.. .+..+..+.-      ..++  .++|+|||+++.++..          ++.|.+||+.+.+..      
T Consensus        30 d~~v~v~D~~-t~~~~~~i~~------g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~------   94 (361)
T 2oiz_A           30 ESRVHVYDYT-NGKFLGMVPT------AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE------   94 (361)
T ss_dssp             GCEEEEEETT-TCCEEEEEEC------CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE------
T ss_pred             cCeEEEEECC-CCeEEEEecC------CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE------
Confidence            5699999985 4444443321      1233  8999999999999863          678999987533211      


Q ss_pred             CCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEec--CCcEEEEecCCccccceeeccCCCCCccccc-cccc
Q 005459          109 QPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAAL-SHHF  185 (696)
Q Consensus       109 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~--~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~-~~~s  185 (696)
                             ..+.+.  ......+....-..+++++++++++..  ++.|.+++.+.  ....            .. ++. 
T Consensus        95 -------~~i~~~--~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~--~~~~------------~~~i~~-  150 (361)
T 2oiz_A           95 -------KEISLP--PKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK--GDYV------------EDVTAA-  150 (361)
T ss_dssp             -------EEEEEC--TTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT--TEEE------------EEEGGG-
T ss_pred             -------EEEEcC--ccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC--CcEE------------EEEecC-
Confidence                   111100  000000111112367889999999874  46787765432  2111            11 110 


Q ss_pred             CCCCcccccCCCccccCCcCCCcccEEEEEEccCc-ceEEEEEeCCcEEEEeecc-CCceeeeeeecceecCCCCeEEEE
Q 005459          186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDKELGSGDAVCAS  263 (696)
Q Consensus       186 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~s~dG~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~v~v~  263 (696)
                                            .. ...+...|.. ..++.+++||+++...... +.+. ........+......+.+.
T Consensus       151 ----------------------~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~-~~~~~~~~~~~~~~~~~~~  206 (361)
T 2oiz_A          151 ----------------------AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA-SQSRSKQMFSVKDDPIFIA  206 (361)
T ss_dssp             ----------------------TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE-EEEECCCCSCTTTSCBCSC
T ss_pred             ----------------------CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe-eeccccceEcCCCCceEEE
Confidence                                  00 0001122222 3456677888877665532 3322 1111001111223344455


Q ss_pred             EcCCCcEEEEEecCCeEEEEEccCCC-ceeeEEeecc---CCCCCCCCCCeEEEEECCCCCeEEEEEc-----------C
Q 005459          264 IAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYD---WGYSMDDTGPVSCIAWTPDNSAFAVGWK-----------S  328 (696)
Q Consensus       264 ~sp~~~~la~g~~dg~v~vw~~~~~~-~~~~~~~~~~---~~~~~~h~g~V~~l~~spdg~~lasg~~-----------D  328 (696)
                      ++|++..++..+.+|+|.++|+.... .....+....   ..... .......++|+|||+.+.++..           .
T Consensus       207 ~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~  285 (361)
T 2oiz_A          207 PALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNW-VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPA  285 (361)
T ss_dssp             CEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTC-EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCC
T ss_pred             ecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccc-ccCCeeEEEEecCCCeEEEEEccCCCcccccCCC
Confidence            67888888888899999999987522 1222222100   00000 0111223789999998887654           3


Q ss_pred             CcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCc--eEEEEec
Q 005459          329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGY--RLYAIEE  390 (696)
Q Consensus       329 g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~--~l~~~~~  390 (696)
                      ++|.+||+.+++.+.++..++   ..+++|+|++    +.+.++.  ++.+||.+++  +++....
T Consensus       286 ~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg----~~l~v~n~~~v~v~D~~t~~l~~~~~i~  344 (361)
T 2oiz_A          286 AEIWVMDTKTKQRVARIPGRD---ALSMTIDQQR----NLMLTLDGGNVNVYDISQPEPKLLRTIE  344 (361)
T ss_dssp             SEEEEEETTTTEEEEEEECTT---CCEEEEETTT----TEEEEECSSCEEEEECSSSSCEEEEEET
T ss_pred             ceEEEEECCCCcEEEEEecCC---eeEEEECCCC----CEEEEeCCCeEEEEECCCCcceeeEEec
Confidence            479999999999999998873   8999999998    6555443  8889999999  8887753

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.23  E-value=1.7e-09  Score=125.09  Aligned_cols=148  Identities=11%  Similarity=0.053  Sum_probs=99.9

Q ss_pred             EEEEeCCcEEEEeec-----cCCceeeeeee------c----ceecCCCCeEEEEEcCCCcEEEEEecC----CeEEEEE
Q 005459          224 FVLYSNGQLMSCSVS-----KKGLKLAEFIK------I----DKELGSGDAVCASIAPEQQILAVGTRR----GVVELYD  284 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~-----d~~~~~~~~~~------~----~~~~~~~~~v~v~~sp~~~~la~g~~d----g~v~vw~  284 (696)
                      +.++|||+.++..+.     +..+.+|+...      +    ..+..+.+.....|+|+|+.|+..+.+    +.|.+|+
T Consensus       238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d  317 (710)
T 2xdw_A          238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINID  317 (710)
T ss_dssp             EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred             EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEe
Confidence            557899998877765     34566777654      3    223445555555689999988877653    3699999


Q ss_pred             ccCCC-ceeeEEeeccCCCCCCCCC--CeEEEEECCCCCeEEEEEcCCc--EEEEEccCCeeEEEeecccccceeccccc
Q 005459          285 LAESA-SLIRTVSLYDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRG--LTVWSVSGCRLMSTIRQISLSSISSPIVK  359 (696)
Q Consensus       285 ~~~~~-~~~~~~~~~~~~~~~~h~g--~V~~l~~spdg~~lasg~~Dg~--v~vW~~~~~~~~~~l~~~~~~~v~~~~~s  359 (696)
                      +++.. ...+.+..        |..  .+..++|++++..+++...|+.  |.+|++.+++....+..+ ...+..+.++
T Consensus       318 ~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s  388 (710)
T 2xdw_A          318 FTDPEESKWKVLVP--------EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQ  388 (710)
T ss_dssp             TTSCCGGGCEEEEC--------CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEECC
T ss_pred             CCCCCcccceeccC--------CCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-CceEEEEecC
Confidence            87622 13455554        433  6888999988889999998885  555676566667777766 5668888888


Q ss_pred             CCCCCCcccee-cc------eeeEEEcCCCce
Q 005459          360 PNQDCKYEPLM-SG------TSMMQWDEYGYR  384 (696)
Q Consensus       360 p~~~~~~~~l~-sg------~~~~~W~~~~~~  384 (696)
                      |++    ..++ +.      .++..|+..+++
T Consensus       389 ~d~----~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          389 KKD----TEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TTC----SEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCC----CEEEEEEeCCCCCCEEEEEECCCCc
Confidence            876    3332 21      167778877655

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.19  E-value=1.2e-09  Score=111.69  Aligned_cols=229  Identities=8%  Similarity=-0.037  Sum_probs=139.2

Q ss_pred             ceEEEEEeCCc-EEEEeeccCCceeeeeeec-ceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459          221 RLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKI-DKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL  297 (696)
Q Consensus       221 ~~~~~~s~dG~-~~~~~~~d~~~~~~~~~~~-~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~  297 (696)
                      ....+++++|+ ++++...++.+..|+.... +.+..+...+. ++++|+++++++...++.|.+||..+ ++.......
T Consensus        30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~-g~~~~~~~~  108 (296)
T 3e5z_A           30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG-GEWESIADS  108 (296)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT-CCEEEEECE
T ss_pred             ccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC-CcEEEEeec
Confidence            34566889998 7777777888888886543 11233444454 99999999998887789999999866 444332222


Q ss_pred             ccCCCCCCCCCCeEEEEECCCCCeEEEE----Ec-------------CCcEEEEEccCCeeEEEeecccccceecccccC
Q 005459          298 YDWGYSMDDTGPVSCIAWTPDNSAFAVG----WK-------------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP  360 (696)
Q Consensus       298 ~~~~~~~~h~g~V~~l~~spdg~~lasg----~~-------------Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp  360 (696)
                      ..    ......+..++++|||+.+++.    ..             .+.|..++.. ++ +..+..+ ......++|+|
T Consensus       109 ~~----~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~-~~~~~gi~~s~  181 (296)
T 3e5z_A          109 FE----GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRD-RVKPNGLAFLP  181 (296)
T ss_dssp             ET----TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECC-CSSEEEEEECT
T ss_pred             cC----CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecC-CCCCccEEECC
Confidence            00    0012356789999999988873    31             2355555554 33 3333333 34567889999


Q ss_pred             CCCCCccceecce---eeEEEcCC-CceE---EEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEe
Q 005459          361 NQDCKYEPLMSGT---SMMQWDEY-GYRL---YAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQ  430 (696)
Q Consensus       361 ~~~~~~~~l~sg~---~~~~W~~~-~~~l---~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~  430 (696)
                      ++    +.+++..   .+..|+.. .+++   ......+...+  ++++. ++..++.  ++.+..|+.. ++.      
T Consensus       182 dg----~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~------  248 (296)
T 3e5z_A          182 SG----NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE------  248 (296)
T ss_dssp             TS----CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE------
T ss_pred             CC----CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE------
Confidence            98    6555433   67788875 3443   12221111111  34444 4333333  4445555432 111      


Q ss_pred             cCCCCcceeEEeecCeeeecCCCceEEEEE-cCCCCEEEEEeCCccEEEEccCCce
Q 005459          431 SEDTDELKILHLNLPVSYISQNWPVQHVAA-SKDGMFLAVAGLHGLILYDIRQKKW  485 (696)
Q Consensus       431 ~~~~~~~~w~~~~~~~~~~~~~~~I~~va~-s~dG~~la~ag~dG~i~w~~~sg~w  485 (696)
                                    ...+..+.. +.+++| +|||+.|.+++.+|+..++..+++.
T Consensus       249 --------------~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~  289 (296)
T 3e5z_A          249 --------------LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGL  289 (296)
T ss_dssp             --------------EEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBC
T ss_pred             --------------EEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccccc
Confidence                          223344445 788999 6999999999998877888877753

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.17  E-value=6.8e-10  Score=128.50  Aligned_cols=233  Identities=10%  Similarity=-0.001  Sum_probs=146.2

Q ss_pred             EEEEeCCcEEEEeeccC-----Cceeeeeeecceec---CCCCeEEEEEcCCCcEEEEEecCCe----------------
Q 005459          224 FVLYSNGQLMSCSVSKK-----GLKLAEFIKIDKEL---GSGDAVCASIAPEQQILAVGTRRGV----------------  279 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~-----~~~~~~~~~~~~~~---~~~~~v~v~~sp~~~~la~g~~dg~----------------  279 (696)
                      ..++|||+.++.+..++     ++++||..+++...   .+.....++|+|||+.|+.++.++.                
T Consensus       130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~  209 (710)
T 2xdw_A          130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK  209 (710)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred             EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCE
Confidence            45889999888776543     68888887665431   1112223899999999999998876                


Q ss_pred             EEEEEccCCCce--eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-----CCcEEEEEccC------Ce-eEEEe
Q 005459          280 VELYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-----SRGLTVWSVSG------CR-LMSTI  345 (696)
Q Consensus       280 v~vw~~~~~~~~--~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-----Dg~v~vW~~~~------~~-~~~~l  345 (696)
                      |++|++.+ +..  .......      .|...+..++|||||++|+.++.     +..|.+||+.+      +. ....+
T Consensus       210 v~~~~l~t-~~~~~~~v~~~~------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l  282 (710)
T 2xdw_A          210 LYYHVLGT-DQSEDILCAEFP------DEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL  282 (710)
T ss_dssp             EEEEETTS-CGGGCEEEECCT------TCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred             EEEEECCC-CcccceEEeccC------CCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence            99999976 332  1222221      15666889999999999998775     56899999986      42 34555


Q ss_pred             ecccccceecccccCCCCCCccceecce-------eeEEEcCCCce--EEEEecCCcc--eE--EEEec-ceeeeeccCC
Q 005459          346 RQISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYR--LYAIEEGSSE--RV--LIFSF-GKCCLNRGVS  411 (696)
Q Consensus       346 ~~~~~~~v~~~~~sp~~~~~~~~l~sg~-------~~~~W~~~~~~--l~~~~~~~~~--~v--~~~~~-~~~~~s~~~d  411 (696)
                      ..+ ...+.. .++|++    ..++...       .+..|+..+++  .+..+..+..  .+  +.+.. ++.+++...+
T Consensus       283 ~~~-~~~~~~-~~s~dg----~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~  356 (710)
T 2xdw_A          283 IDN-FEGEYD-YVTNEG----TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (710)
T ss_dssp             ECS-SSSCEE-EEEEET----TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             eCC-CCcEEE-EEeccC----CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence            554 222332 467776    3332111       57788887653  1222223322  44  33333 5566777777


Q ss_pred             CCceeeeeee--cCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC----CccE-EEEccCCc
Q 005459          412 GMTYARQVIY--GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL----HGLI-LYDIRQKK  484 (696)
Q Consensus       412 ~~~~~w~~~~--~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~----dG~i-~w~~~sg~  484 (696)
                      +..++|.+..  ++.                    ...+..+...|..++++|||+.++....    .+.+ +||+.+++
T Consensus       357 g~~~l~~~~~~~g~~--------------------~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          357 VKNTLQLHDLATGAL--------------------LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TEEEEEEEETTTCCE--------------------EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEEEEEEEECCCCCE--------------------EEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            7666655432  221                    1223334567888999999987765433    3678 99999887


Q ss_pred             --eEecC
Q 005459          485 --WRVFG  489 (696)
Q Consensus       485 --w~~f~  489 (696)
                        .+++.
T Consensus       417 ~~~~~l~  423 (710)
T 2xdw_A          417 LEPRVFR  423 (710)
T ss_dssp             CCCEEEE
T ss_pred             cceEEee
Confidence              65543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.17  E-value=2e-09  Score=111.98  Aligned_cols=231  Identities=9%  Similarity=0.025  Sum_probs=139.9

Q ss_pred             EEeCCcEEEEeeccCCceeeeeeecceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCC
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM  304 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v-~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~  304 (696)
                      +++++..++....+.+++.|.......+.++.... .++|+|++++++++..++.|.+||.++ ++.......       
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~-~~~~~~~~~-------   84 (333)
T 2dg1_A           13 YSGKSNSAVPIISESELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET-KEIKRPFVS-------   84 (333)
T ss_dssp             SCGGGGCSSCCCCGGGSCEEECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEEC-------
T ss_pred             ecCCccceeEEeecccCcccccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCC-CcEEEEeeC-------
Confidence            44455444444455666666433222233333334 499999999988999999999999876 444433333       


Q ss_pred             CCCCCeEEEEECCCCCeEEEEEcC----CcEEEEEccCCeeEEEeec-ccccceecccccCCCCCCccceecce------
Q 005459          305 DDTGPVSCIAWTPDNSAFAVGWKS----RGLTVWSVSGCRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSGT------  373 (696)
Q Consensus       305 ~h~g~V~~l~~spdg~~lasg~~D----g~v~vW~~~~~~~~~~l~~-~~~~~v~~~~~sp~~~~~~~~l~sg~------  373 (696)
                       +...+.+++|+|||+.+++...+    ++|.+||..++.....+.. .....+..++++|++    ..+++..      
T Consensus        85 -~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g----~l~v~~~~~~~~~  159 (333)
T 2dg1_A           85 -HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG----GFYFTDFRGYSTN  159 (333)
T ss_dssp             -SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS----CEEEEECCCBTTB
T ss_pred             -CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC----CEEEEeccccccC
Confidence             56789999999999988888776    6899999988765434432 113457888999987    6666432      


Q ss_pred             ---eeEEEcCCCceEEEEecCCcceE--EEEec-ceee-eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCe
Q 005459          374 ---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV  446 (696)
Q Consensus       374 ---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~-~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  446 (696)
                         .+..++.+++++...... ....  +++++ ++.+ ++...++.+..|++......+....           .....
T Consensus       160 ~~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~-----------~~~~~  227 (333)
T 2dg1_A          160 PLGGVYYVSPDFRTVTPIIQN-ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG-----------ATIPY  227 (333)
T ss_dssp             CCEEEEEECTTSCCEEEEEEE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE-----------EEEEE
T ss_pred             CCceEEEEeCCCCEEEEeecC-CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccccc-----------ceEEE
Confidence               355566665544332211 1112  44555 4433 4444556666666542211100000           00011


Q ss_pred             eeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459          447 SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       447 ~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s  482 (696)
                      .+.++ ..+..++++++|++.++...++.+ +||...
T Consensus       228 ~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g  263 (333)
T 2dg1_A          228 YFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG  263 (333)
T ss_dssp             ECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred             ecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCC
Confidence            11122 356889999999988877777777 998754

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.15  E-value=2.3e-09  Score=112.08  Aligned_cols=216  Identities=9%  Similarity=0.063  Sum_probs=132.8

Q ss_pred             EEEEeCCcEEEEeecc---CC--ceeeeeeecce--ecCCCCeEE-EEEcCCCcEEEEEecC------------------
Q 005459          224 FVLYSNGQLMSCSVSK---KG--LKLAEFIKIDK--ELGSGDAVC-ASIAPEQQILAVGTRR------------------  277 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d---~~--~~~~~~~~~~~--~~~~~~~v~-v~~sp~~~~la~g~~d------------------  277 (696)
                      ..++|||+.++..+.+   +.  +.+++...++.  +..+.. +. ++|+||++.||.++.+                  
T Consensus        64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  142 (347)
T 2gop_A           64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFD  142 (347)
T ss_dssp             EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC--
T ss_pred             eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeec
Confidence            5688999888776654   23  44555443322  222223 55 9999999999998743                  


Q ss_pred             ---------CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC-------cEEEEEccCCee
Q 005459          278 ---------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-------GLTVWSVSGCRL  341 (696)
Q Consensus       278 ---------g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg-------~v~vW~~~~~~~  341 (696)
                               ..|.+|++.+ ++.++.+..        .  .+..++||||| .++++..++       ...+|.+.+++.
T Consensus       143 g~~~~~~~~~~l~~~d~~~-~~~~~~l~~--------~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~  210 (347)
T 2gop_A          143 DLGFFDGEKTTFWIFDTES-EEVIEEFEK--------P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE  210 (347)
T ss_dssp             -------CEEEEEEEETTT-TEEEEEEEE--------E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred             CcccccCccceEEEEECCC-CeEEeeecC--------C--CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce
Confidence                     5788888876 554344543        1  57889999999 888776652       455665555543


Q ss_pred             EEEeecccccceecccccCCCCCCccceecce-----------eeEEEcCCCceEEEEecCCcceEEE-Eec-ceeeeec
Q 005459          342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-----------SMMQWDEYGYRLYAIEEGSSERVLI-FSF-GKCCLNR  408 (696)
Q Consensus       342 ~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-----------~~~~W~~~~~~l~~~~~~~~~~v~~-~~~-~~~~~s~  408 (696)
                       ..+..+  ..+..+  +|++    +.++...           .+..|+  +++......++...+.. +.+ ...++++
T Consensus       211 -~~l~~~--~~~~~~--spdg----~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~sdg~~~~~  279 (347)
T 2gop_A          211 -EKMFEK--VSFYAV--DSDG----ERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKDGKVYFTL  279 (347)
T ss_dssp             -EEEEEE--ESEEEE--EECS----SCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEETTEEEEEE
T ss_pred             -EEeccC--cceeeE--CCCC----CEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEcCcEEEEE
Confidence             333332  233433  8887    5444222           455666  55555444455555532 333 3466777


Q ss_pred             cCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE--EEEccCCceE
Q 005459          409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDIRQKKWR  486 (696)
Q Consensus       409 ~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i--~w~~~sg~w~  486 (696)
                      +.++..++| +. ...                    +.....+...|.+++|+|  +.+++++.++..  +|.+. ++.+
T Consensus       280 ~~~~~~~l~-~~-~g~--------------------~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~  334 (347)
T 2gop_A          280 FEEGSVNLY-IW-DGE--------------------IKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEK  334 (347)
T ss_dssp             EETTEEEEE-EE-SSS--------------------EEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEE
T ss_pred             ecCCcEEEE-Ec-CCc--------------------eEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEE
Confidence            888888888 76 222                    122334466799999999  677777777754  88776 6554


Q ss_pred             ec
Q 005459          487 VF  488 (696)
Q Consensus       487 ~f  488 (696)
                      .+
T Consensus       335 ~l  336 (347)
T 2gop_A          335 QL  336 (347)
T ss_dssp             EC
T ss_pred             Ee
Confidence            43

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.13  E-value=1.2e-09  Score=127.22  Aligned_cols=235  Identities=10%  Similarity=-0.026  Sum_probs=147.6

Q ss_pred             EEEEeCCcEEEEeecc-----CCceeeeeeecceecCCCCeE---EEEEcCCCcEEEEEecCCe--------------EE
Q 005459          224 FVLYSNGQLMSCSVSK-----KGLKLAEFIKIDKELGSGDAV---CASIAPEQQILAVGTRRGV--------------VE  281 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d-----~~~~~~~~~~~~~~~~~~~~v---~v~~sp~~~~la~g~~dg~--------------v~  281 (696)
                      ..++|||+.++.+..+     .++++||...++....+...+   .++|+|| +.|+.++.|+.              |+
T Consensus       168 ~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~  246 (741)
T 1yr2_A          168 WAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVW  246 (741)
T ss_dssp             EEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEE
T ss_pred             EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEE
Confidence            5588999988877654     357888887665442221122   3889999 99999887664              88


Q ss_pred             EEEccCCCce-eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC-----cEEEEEccCC--eeEEEeecccccce
Q 005459          282 LYDLAESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-----GLTVWSVSGC--RLMSTIRQISLSSI  353 (696)
Q Consensus       282 vw~~~~~~~~-~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg-----~v~vW~~~~~--~~~~~l~~~~~~~v  353 (696)
                      +|++.+.... ...+...      .|...+..+.|||||++|+..+.++     .|.+||+.++  .....+..+ ...+
T Consensus       247 ~~~lgt~~~~~~lv~~~~------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~  319 (741)
T 1yr2_A          247 LHRLGTPQSADQPVFATP------ELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD-LKAQ  319 (741)
T ss_dssp             EEETTSCGGGCEEEECCT------TCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS-SSSC
T ss_pred             EEECCCCchhCEEEeccC------CCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC-CCce
Confidence            8988762211 1222221      1444689999999999998887654     8999999876  314455444 2223


Q ss_pred             ecccccCCCCCCccceecce-------eeEEEcCCCc--eEEEEecCCcceEEEEec--ceeeeeccCCCCceeeeeeec
Q 005459          354 SSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGY--RLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYG  422 (696)
Q Consensus       354 ~~~~~sp~~~~~~~~l~sg~-------~~~~W~~~~~--~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~  422 (696)
                      ..+ ++|++    +.++..+       .+..|+.+++  +.......+...+..+.+  ++.+++...|+..++|.+...
T Consensus       320 ~~~-~~~dg----~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~  394 (741)
T 1yr2_A          320 WDF-VDGVG----DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLD  394 (741)
T ss_dssp             EEE-EEEET----TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETT
T ss_pred             EEE-EeccC----CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC
Confidence            333 23665    4333221       5788888774  344444444444544444  556777778888888776522


Q ss_pred             CCeEEEEecCCCCcceeEEeecCeeee-cCCCceEEEEEcCCCCEEEEEe----CCccE-EEEccCCceEecCC
Q 005459          423 EDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQHVAASKDGMFLAVAG----LHGLI-LYDIRQKKWRVFGD  490 (696)
Q Consensus       423 ~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~I~~va~s~dG~~la~ag----~dG~i-~w~~~sg~w~~f~~  490 (696)
                      ...                   +..+. .+...|..++++|||+.++...    ..+.+ +||+.+++.+++..
T Consensus       395 g~~-------------------~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l~~  449 (741)
T 1yr2_A          395 GKP-------------------AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPWEP  449 (741)
T ss_dssp             SCE-------------------EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEECSC
T ss_pred             CCc-------------------eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEec
Confidence            221                   11122 1345688899999998776433    34778 99999998777653

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.13  E-value=1.4e-07  Score=105.22  Aligned_cols=250  Identities=8%  Similarity=0.071  Sum_probs=135.0

Q ss_pred             EEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCccccc
Q 005459           27 FKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQI  105 (696)
Q Consensus        27 fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~  105 (696)
                      .++++.++++. .+++|.++|.. ....+..+.-.       .....+.|||||+++.+++.+|.|.+||+......   
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~-t~~v~~~i~~g-------~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~---  231 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGS-TYEIKTVLDTG-------YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT---  231 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETT-TCCEEEEEECS-------SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC---
T ss_pred             cCCCceEEEEeCCCCeEEEEECC-CCeEEEEEeCC-------CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc---
Confidence            34445566665 46799999996 55445444211       12247899999999999999999999998411110   


Q ss_pred             CCCCCCCceeeeeeEEEeeeccccccceeEEEee----eCCCeEEEEecC-CcEEEEecCCccccceeeccCCCCCcccc
Q 005459          106 GGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV----SDNKHMLLGLSD-GSLYSISWKGEFYGAFELVHSSNDSSVAA  180 (696)
Q Consensus       106 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~----~~~~~llv~t~~-g~i~~~~w~~~~~~~~~~~~~p~~~~~~~  180 (696)
                              .+.        .+.. +....-..++    +++++++++... +.+.+++  ..+....            .
T Consensus       232 --------~v~--------~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD--~~t~~~~------------~  280 (567)
T 1qks_A          232 --------TVA--------EIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMD--GETLEPK------------K  280 (567)
T ss_dssp             --------EEE--------EEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEE--TTTCCEE------------E
T ss_pred             --------EeE--------EEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEE--CCCCcEE------------E
Confidence                    001        1111 1111223566    588888887665 7777764  3332211            1


Q ss_pred             ccccc---CCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEee-ccCCceeeeeeeccee---
Q 005459          181 LSHHF---PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKIDKE---  253 (696)
Q Consensus       181 ~~~~s---~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~-~d~~~~~~~~~~~~~~---  253 (696)
                      .++..   .+.+              .......+..+.          .++++..++... .++.+.++|....+..   
T Consensus       281 ~i~~~~~~~~~~--------------~~~p~~rva~i~----------~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~  336 (567)
T 1qks_A          281 IQSTRGMTYDEQ--------------EYHPEPRVAAIL----------ASHYRPEFIVNVKETGKILLVDYTDLNNLKTT  336 (567)
T ss_dssp             EEECCEECTTTC--------------CEESCCCEEEEE----------ECSSSSEEEEEETTTTEEEEEETTCSSEEEEE
T ss_pred             EEeccccccccc--------------cccCCCceEEEE----------EcCCCCEEEEEecCCCeEEEEecCCCccceee
Confidence            11100   0000              000011233332          344444333332 2344444443221100   


Q ss_pred             -cCCCCeEE-EEEcCCCcEEEEEe-cCCeEEEEEccCCCceeeEEee-ccCCCCCCCCCCeEEEEECCCCCeE-EEEE-c
Q 005459          254 -LGSGDAVC-ASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSL-YDWGYSMDDTGPVSCIAWTPDNSAF-AVGW-K  327 (696)
Q Consensus       254 -~~~~~~v~-v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~~~~~~~-~~~~~~~~h~g~V~~l~~spdg~~l-asg~-~  327 (696)
                       ........ +.|+|+++++.+++ .+++|.++|+.+ ++.+..+.. ...|    |.+.-..+ ++|++..+ +++. .
T Consensus       337 ~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t-~kl~~~i~vgg~~P----hpg~g~~~-~~p~~g~v~~t~~~g  410 (567)
T 1qks_A          337 EISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE-GKLVAIEDTGGQTP----HPGRGANF-VHPTFGPVWATSHMG  410 (567)
T ss_dssp             EEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECSSSSB----CCTTCEEE-EETTTEEEEEEEBSS
T ss_pred             eeeccccccCceECCCCCEEEEEeCCCCeEEEEECCC-CcEEEEEeccCcCC----CCccceee-ECCCCCcEEEeCCCC
Confidence             11122333 78999999887766 578999999988 666665543 2222    65533333 68885544 4543 4


Q ss_pred             CCcEEEEEccC-------CeeEEEeecc
Q 005459          328 SRGLTVWSVSG-------CRLMSTIRQI  348 (696)
Q Consensus       328 Dg~v~vW~~~~-------~~~~~~l~~~  348 (696)
                      +++|.+++...       .+.+.++...
T Consensus       411 ~~~Vsvid~~~~~~~~~~~kvv~~i~~~  438 (567)
T 1qks_A          411 DDSVALIGTDPEGHPDNAWKILDSFPAL  438 (567)
T ss_dssp             SSEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred             CCeEEEecCCCCCCccccCEEEEEEecC
Confidence            68999999876       4455666543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.12  E-value=3.7e-09  Score=106.12  Aligned_cols=225  Identities=6%  Similarity=-0.054  Sum_probs=135.8

Q ss_pred             EEEEeCCcEEE-EeeccCCceeeeeeeccee---cCC-CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeec
Q 005459          224 FVLYSNGQLMS-CSVSKKGLKLAEFIKIDKE---LGS-GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY  298 (696)
Q Consensus       224 ~~~s~dG~~~~-~~~~d~~~~~~~~~~~~~~---~~~-~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~  298 (696)
                      +++.++|++++ +...++.+..++.......   ..+ ..+..++++++++++++.. ++.|.+|+.+.  .....+.. 
T Consensus        29 i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~--~~~~~~~~-  104 (270)
T 1rwi_B           29 VAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS--NNQTVLPF-  104 (270)
T ss_dssp             EEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTC--SCCEECCC-
T ss_pred             eEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCC--ceEeeeec-
Confidence            34677888776 4456666777765433221   122 2344499999999777666 89999999765  22222222 


Q ss_pred             cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---ee
Q 005459          299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM  375 (696)
Q Consensus       299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~  375 (696)
                            .....+..++++|+|+.+++...++.|.+|+..+.......... ......++++|++    ..+++..   .+
T Consensus       105 ------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g----~l~v~~~~~~~i  173 (270)
T 1rwi_B          105 ------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG-LNDPDGVAVDNSG----NVYVTDTDNNRV  173 (270)
T ss_dssp             ------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCS-CCSCCCEEECTTC----CEEEEEGGGTEE
T ss_pred             ------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecccc-CCCceeEEEeCCC----CEEEEECCCCEE
Confidence                  12356899999999998888777899999986554332221111 3356778888887    6665432   78


Q ss_pred             EEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCC
Q 005459          376 MQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN  452 (696)
Q Consensus       376 ~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  452 (696)
                      ..|+..+.........+....  ++++. +...++...++.+..++.......                    .....+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~--------------------~~~~~~~  233 (270)
T 1rwi_B          174 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST--------------------VLPFTGL  233 (270)
T ss_dssp             EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE--------------------ECCCCSC
T ss_pred             EEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce--------------------eeccCCC
Confidence            889888766544332222223  33433 333444444445554443211110                    0011222


Q ss_pred             CceEEEEEcCCCCEEEEEeCCccE-EEEccCC
Q 005459          453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK  483 (696)
Q Consensus       453 ~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg  483 (696)
                      ..+..+++++||+.+++...++.+ +|+....
T Consensus       234 ~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          234 NTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            457899999999988888889999 9987654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.09  E-value=6.8e-09  Score=119.81  Aligned_cols=236  Identities=7%  Similarity=-0.003  Sum_probs=136.1

Q ss_pred             CCCCeEE-EEEcCCCcEEEE-----EecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCe--EEEEECCCCCeEEEEE
Q 005459          255 GSGDAVC-ASIAPEQQILAV-----GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPV--SCIAWTPDNSAFAVGW  326 (696)
Q Consensus       255 ~~~~~v~-v~~sp~~~~la~-----g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V--~~l~~spdg~~lasg~  326 (696)
                      +|...+. ++|||||++||.     |+.+.+|++||+++ ++.+.  ..        +...+  ..++|||||+.|+.++
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t-g~~~~--~~--------~~~~~~~~~~~wspDg~~l~~~~  186 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS-GEWSK--VD--------VIEGGKYATPKWTPDSKGFYYEW  186 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT-CCBCS--SC--------CBSCCTTCCCEECTTSSEEEEEE
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC-CCCcC--Cc--------ccCcccccceEEecCCCEEEEEE
Confidence            3444565 999999999994     44457899999987 54331  11        11122  6799999999999999


Q ss_pred             cCCc-------------EEEEEccCCe----eEEEeecccccceecccccCCCCCCccceecce-------eeEEEcCCC
Q 005459          327 KSRG-------------LTVWSVSGCR----LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYG  382 (696)
Q Consensus       327 ~Dg~-------------v~vW~~~~~~----~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-------~~~~W~~~~  382 (696)
                      .|.+             |++|++.++.    ++....++ ...+.++.++|++    +.++..+       .+.+|+..+
T Consensus       187 ~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~-~~~~~~~~~SpDG----~~l~~~~~~~~~~~~l~~~~~~~  261 (695)
T 2bkl_A          187 LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD-PTTFLQSDLSRDG----KYLFVYILRGWSENDVYWKRPGE  261 (695)
T ss_dssp             CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC-TTCEEEEEECTTS----CCEEEEEEETTTEEEEEEECTTC
T ss_pred             ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC-CEEEEEEEECCCC----CEEEEEEeCCCCceEEEEEcCCC
Confidence            8876             9999998765    33333333 3457889999998    6655332       344555544


Q ss_pred             ceEEEEecCCcceE-EEEecceeeeecc---CCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecC--CCceE
Q 005459          383 YRLYAIEEGSSERV-LIFSFGKCCLNRG---VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ--NWPVQ  456 (696)
Q Consensus       383 ~~l~~~~~~~~~~v-~~~~~~~~~~s~~---~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~I~  456 (696)
                      +++........... ...+.++.++..+   .++.+..|++..++.            ..|      ..+..+  ...|.
T Consensus       262 ~~~~~l~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~------------~~~------~~l~~~~~~~~l~  323 (695)
T 2bkl_A          262 KDFRLLVKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPAR------------ASW------KEIVPEDSSASLL  323 (695)
T ss_dssp             SSCEEEEECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSG------------GGC------EEEECCCSSCEEE
T ss_pred             CceEEeecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCc------------cCC------eEEecCCCCCeEE
Confidence            44333322221112 1122344333333   234455555433321            011      122222  45688


Q ss_pred             EEEEcCCCCEEEEEeCCccE-EEEcc-CCc-eEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459          457 HVAASKDGMFLAVAGLHGLI-LYDIR-QKK-WRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       457 ~va~s~dG~~la~ag~dG~i-~w~~~-sg~-w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      .++++ +++.+++...||.. +|.+. +++ .+.+.  ..+ ...+.++.+.  ++.++.. +.......+|.+|+..
T Consensus       324 ~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~--~~~-~~~v~~~~~s~d~~~l~~~-~ss~~~P~~v~~~d~~  396 (695)
T 2bkl_A          324 SVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ--LPG-VGAASNLMGLEDLDDAYYV-FTSFTTPRQIYKTSVS  396 (695)
T ss_dssp             EEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECC--CSS-SSEECCCBSCTTCSEEEEE-EEETTEEEEEEEEETT
T ss_pred             EEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec--CCC-CeEEEEeecCCCCCEEEEE-EcCCCCCCEEEEEECC
Confidence            89998 78889999999988 87654 232 22221  011 1234456664  3445544 2333455688888764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.08  E-value=1e-07  Score=101.00  Aligned_cols=74  Identities=11%  Similarity=-0.010  Sum_probs=60.8

Q ss_pred             EEEcCCCcEEEEEec----------CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEE-cCC
Q 005459          262 ASIAPEQQILAVGTR----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGW-KSR  329 (696)
Q Consensus       262 v~~sp~~~~la~g~~----------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~-~Dg  329 (696)
                      ++++||++.+.++..          ++.|.++|..+ .+.+.++..         .+....++|+|||+ .++++. .++
T Consensus       272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i~~---------g~~p~~i~~s~Dg~~~l~v~~~~~~  341 (373)
T 2mad_H          272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQISL---------GHDVDAISVAQDGGPDLYALSAGTE  341 (373)
T ss_pred             EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEEEC---------CCCcCeEEECCCCCeEEEEEcCCCC
Confidence            789999988877654          35899999987 777777765         34589999999999 788876 589


Q ss_pred             cEEEEEccCCeeEEEe
Q 005459          330 GLTVWSVSGCRLMSTI  345 (696)
Q Consensus       330 ~v~vW~~~~~~~~~~l  345 (696)
                      .|.++|+.+++.+.++
T Consensus       342 ~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          342 VLHIYDAGAGDQDQST  357 (373)
T ss_pred             eEEEEECCCCCEEeee
Confidence            9999999999888774

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.07  E-value=1.3e-08  Score=118.26  Aligned_cols=150  Identities=13%  Similarity=0.066  Sum_probs=97.4

Q ss_pred             EEEEeCCcEEEEeeccC-----Cceeeeeeec--c---eecCCCCeEEEEEcCCCcEEEEEec----CCeEEEEEccCCC
Q 005459          224 FVLYSNGQLMSCSVSKK-----GLKLAEFIKI--D---KELGSGDAVCASIAPEQQILAVGTR----RGVVELYDLAESA  289 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~-----~~~~~~~~~~--~---~~~~~~~~v~v~~sp~~~~la~g~~----dg~v~vw~~~~~~  289 (696)
                      +.++|||+.++..+.+.     .+.+|+...+  +   .+..+.+...-.++|+++.|+..+.    ++.|.+|++++..
T Consensus       273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~  352 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST  352 (741)
T ss_dssp             EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred             EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence            55789999887777543     5667777544  2   2334444444234599999988876    3559999987621


Q ss_pred             ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc-CCeeEEEeecccccceecccccCCCCCCccc
Q 005459          290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKPNQDCKYEP  368 (696)
Q Consensus       290 ~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~-~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~  368 (696)
                      ...+.+..       .+...+..++|+ ++..+++...|+..+||.+. .+.....+..++...+..+.++|++    ..
T Consensus       353 ~~~~~l~~-------~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~----~~  420 (741)
T 1yr2_A          353 PRFDTVVP-------ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGD----RH  420 (741)
T ss_dssp             CEEEEEEC-------CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTC----SC
T ss_pred             cccEEEec-------CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCC----CE
Confidence            23333333       145567788888 67788889999988888664 3445566654335668888888876    33


Q ss_pred             ee----cc---eeeEEEcCCCceE
Q 005459          369 LM----SG---TSMMQWDEYGYRL  385 (696)
Q Consensus       369 l~----sg---~~~~~W~~~~~~l  385 (696)
                      ++    +.   .++..|+..+++.
T Consensus       421 l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          421 AYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EEEEEEETTEEEEEEEEETTTTEE
T ss_pred             EEEEEcCCCCCCEEEEEECCCCcE
Confidence            33    11   2788899888774

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.04  E-value=3.2e-08  Score=102.73  Aligned_cols=147  Identities=8%  Similarity=0.025  Sum_probs=96.9

Q ss_pred             eEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecC----CeEEEEEccCCCceee
Q 005459          222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRR----GVVELYDLAESASLIR  293 (696)
Q Consensus       222 ~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~d----g~v~vw~~~~~~~~~~  293 (696)
                      ..+++++||+++++...++.+..|+...++..   ..+...+. ++++|+++++++...+    +.|.+||.+. .....
T Consensus        48 ~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~-~~~~~  126 (333)
T 2dg1_A           48 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG-DNLQD  126 (333)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-CSCEE
T ss_pred             cCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC-CEEEE
Confidence            34567899998887777888888886544321   13344454 9999999998888777    7899999876 44332


Q ss_pred             EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc------CCcEEEEEccCCeeEEEeecccccceecccccCCCCCCcc
Q 005459          294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE  367 (696)
Q Consensus       294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~------Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~  367 (696)
                      .+...      .+...+.+++++|||+.+++...      .+.|..++..+++.......  ......++++|++    +
T Consensus       127 ~~~~~------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~dg----~  194 (333)
T 2dg1_A          127 IIEDL------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDE----K  194 (333)
T ss_dssp             EECSS------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTS----S
T ss_pred             EEccC------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CCcccceEECCCC----C
Confidence            33210      13457999999999998887654      24566666665544322222  2346778899987    5


Q ss_pred             c-eecce---eeEEEcCC
Q 005459          368 P-LMSGT---SMMQWDEY  381 (696)
Q Consensus       368 ~-l~sg~---~~~~W~~~  381 (696)
                      . +++..   .+..|+..
T Consensus       195 ~l~v~~~~~~~i~~~d~~  212 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALE  212 (333)
T ss_dssp             EEEEEEGGGTEEEEEEEC
T ss_pred             EEEEEeCCCCeEEEEEec
Confidence            3 33322   67788874

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.03  E-value=3.4e-08  Score=100.01  Aligned_cols=213  Identities=8%  Similarity=-0.037  Sum_probs=132.9

Q ss_pred             EeCCcEEEEeeccCCceeeeeeeccee---cCCC--CeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459          227 YSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSG--DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG  301 (696)
Q Consensus       227 s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~--~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~  301 (696)
                      +..|+++++++.++.+.+||..+++..   ..+.  ....++++|+|++++  +.++.|..||. + ++.+..+..    
T Consensus         2 ~~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~-G~~~W~~~~----   73 (276)
T 3no2_A            2 SSPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D-GRELWNIAA----   73 (276)
T ss_dssp             -CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T-SCEEEEEEC----
T ss_pred             CCCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C-CCEEEEEcC----
Confidence            355777888888888888887666543   2222  334489999999999  45788999998 5 677777765    


Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEccCCeeEEEeeccc-----ccceecccccCCCCCCccceecce--
Q 005459          302 YSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSGCRLMSTIRQIS-----LSSISSPIVKPNQDCKYEPLMSGT--  373 (696)
Q Consensus       302 ~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~~~~~~~~~l~~~~-----~~~v~~~~~sp~~~~~~~~l~sg~--  373 (696)
                         .+...+.++.+.|||+.+++.+. ++.+..++. .++.+.++.-..     ......+++.+++    +.+++..  
T Consensus        74 ---~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G----~~lv~~~~~  145 (276)
T 3no2_A           74 ---PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG----NYLVPLFAT  145 (276)
T ss_dssp             ---CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS----CEEEEETTT
T ss_pred             ---CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC----CEEEEecCC
Confidence               12346889999999999999887 777877886 455555554210     1123345566776    7776543  


Q ss_pred             -eeEEEcCCCceEEEEecCCcce-EEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec
Q 005459          374 -SMMQWDEYGYRLYAIEEGSSER-VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS  450 (696)
Q Consensus       374 -~~~~W~~~~~~l~~~~~~~~~~-v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  450 (696)
                       .+.+|+++ ++++.....+... -..+.+ ++.+++++.++.+..++..+++.             .|+.-.-.  ..+
T Consensus       146 ~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~-------------~w~~~~~~--~~~  209 (276)
T 3no2_A          146 SEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI-------------VRRVNAND--IEG  209 (276)
T ss_dssp             TEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE-------------EEEEEGGG--SBS
T ss_pred             CEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE-------------EEEecCCC--CCC
Confidence             89999999 4544444332111 122333 66666666665565555433332             34322100  000


Q ss_pred             -CCCceEEEEEcCCCCEEEEEe
Q 005459          451 -QNWPVQHVAASKDGMFLAVAG  471 (696)
Q Consensus       451 -~~~~I~~va~s~dG~~la~ag  471 (696)
                       .-..+..++..++|..+++..
T Consensus       210 ~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          210 VQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             CCCSEEEEEEECTTSCEEEEEE
T ss_pred             ccccccccceEcCCCCEEEEec
Confidence             112367888899999888773

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.03  E-value=5.7e-08  Score=99.14  Aligned_cols=213  Identities=11%  Similarity=0.037  Sum_probs=134.5

Q ss_pred             EEEEEcCCCc-EEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459          260 VCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       260 v~v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~  338 (696)
                      -.++|+|+++ +++++..++.|..|+.+. +  ...+..        +.+.+.+++|+|||+.+++...+++|.+||..+
T Consensus        31 eg~~~d~~g~~l~~~~~~~~~i~~~~~~~-~--~~~~~~--------~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~   99 (296)
T 3e5z_A           31 EGPVYVPARSAVIFSDVRQNRTWAWSDDG-Q--LSPEMH--------PSHHQNGHCLNKQGHLIACSHGLRRLERQREPG   99 (296)
T ss_dssp             EEEEEEGGGTEEEEEEGGGTEEEEEETTS-C--EEEEES--------SCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred             cCCeEeCCCCEEEEEeCCCCEEEEEECCC-C--eEEEEC--------CCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence            3499999998 888999999999999876 3  555655        677899999999999888877789999999966


Q ss_pred             CeeEEEeec---ccccceecccccCCCCCCccceec----ce----------------eeEEEcCCCceEEEEecCCcce
Q 005459          339 CRLMSTIRQ---ISLSSISSPIVKPNQDCKYEPLMS----GT----------------SMMQWDEYGYRLYAIEEGSSER  395 (696)
Q Consensus       339 ~~~~~~l~~---~~~~~v~~~~~sp~~~~~~~~l~s----g~----------------~~~~W~~~~~~l~~~~~~~~~~  395 (696)
                      ++.......   .....+..++++|++    ..+++    |.                .+..++.+ +++.... .+...
T Consensus       100 g~~~~~~~~~~~~~~~~~~~i~~d~~G----~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~  173 (296)
T 3e5z_A          100 GEWESIADSFEGKKLNSPNDVCLAPDG----SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI-RDRVK  173 (296)
T ss_dssp             CCEEEEECEETTEECCCCCCEEECTTS----CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE-CCCSS
T ss_pred             CcEEEEeeccCCCCCCCCCCEEECCCC----CEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee-cCCCC
Confidence            654333221   112346678899988    77775    22                34445554 4433332 22222


Q ss_pred             E--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC
Q 005459          396 V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL  472 (696)
Q Consensus       396 v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~  472 (696)
                      .  +++++ ++.+++.+.++.+..|++..... +.            .   -...+..+...+..++++++|++.++.  
T Consensus       174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~-~~------------~---~~~~~~~~~~~p~~i~~d~~G~l~v~~--  235 (296)
T 3e5z_A          174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGE-TE------------Y---QGVHFTVEPGKTDGLRVDAGGLIWASA--  235 (296)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEEEECSSSC-EE------------E---EEEEECCSSSCCCSEEEBTTSCEEEEE--
T ss_pred             CccEEECCCCCEEEEeCCCCeEEEEEECCCCc-Cc------------C---CCeEeeCCCCCCCeEEECCCCCEEEEc--
Confidence            2  56666 66666666677777777652111 00            0   001111133446789999999976665  


Q ss_pred             CccE-EEEccCCceEecCCccceeeeEEEeEeee---CcEEEEE
Q 005459          473 HGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL---GKIIVVC  512 (696)
Q Consensus       473 dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~---~~~lv~~  512 (696)
                      ++.+ +|+...+..+.+...  +.   +..+++.   ++.|.++
T Consensus       236 ~~~v~~~~~~g~~~~~~~~~--~~---~~~~~f~~~d~~~L~v~  274 (296)
T 3e5z_A          236 GDGVHVLTPDGDELGRVLTP--QT---TSNLCFGGPEGRTLYMT  274 (296)
T ss_dssp             TTEEEEECTTSCEEEEEECS--SC---CCEEEEESTTSCEEEEE
T ss_pred             CCeEEEECCCCCEEEEEECC--CC---ceeEEEECCCCCEEEEE
Confidence            5666 999875443333211  11   4456663   2356665

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.02  E-value=5.3e-08  Score=102.30  Aligned_cols=77  Identities=8%  Similarity=0.077  Sum_probs=62.4

Q ss_pred             EEEcCCCcEEEEEec----------CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEE-EcCC
Q 005459          262 ASIAPEQQILAVGTR----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVG-WKSR  329 (696)
Q Consensus       262 v~~sp~~~~la~g~~----------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg-~~Dg  329 (696)
                      ++++|+++.+.+...          .++|-+.|+.+ .+.++.+..         ...+..|++||||+ +|.+. +.++
T Consensus       285 ~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i~v---------g~~~~~lavs~D~~~~ly~tn~~~~  354 (386)
T 3sjl_D          285 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKFEM---------GHEIDSINVSQDEKPLLYALSTGDK  354 (386)
T ss_dssp             EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE---------EEEECEEEECSSSSCEEEEEETTTT
T ss_pred             eeECCCCCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEEEC---------CCCcceEEECCCCCeEEEEEcCCCC
Confidence            778999888888653          25799999988 788887776         23688999999997 66664 5589


Q ss_pred             cEEEEEccCCeeEEEeecc
Q 005459          330 GLTVWSVSGCRLMSTIRQI  348 (696)
Q Consensus       330 ~v~vW~~~~~~~~~~l~~~  348 (696)
                      +|.++|..+++.+.+++..
T Consensus       355 ~VsViD~~t~k~~~~i~~~  373 (386)
T 3sjl_D          355 TLYIHDAESGEELRSVNQL  373 (386)
T ss_dssp             EEEEEETTTCCEEEEECCC
T ss_pred             eEEEEECCCCcEEEEecCC
Confidence            9999999999999988764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.99  E-value=3.8e-08  Score=99.67  Aligned_cols=181  Identities=12%  Similarity=0.080  Sum_probs=126.6

Q ss_pred             CCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCC-CCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEE
Q 005459          266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT-GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST  344 (696)
Q Consensus       266 p~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~-g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~  344 (696)
                      ..+++|++++.|+.|.+||.++ ++.+.++..        +. ..+.+++++|||+.|+  +.++.|..||. +++.+.+
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~t-G~~~w~~~~--------~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~   70 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDT-KEIVWEYPL--------EKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWN   70 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTT-TEEEEEEEC--------CTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCC-CeEEEEeCC--------CccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEE
Confidence            3468999999999999999877 777777776        44 4689999999999998  34689999999 6778888


Q ss_pred             eecccccceecccccCCCCCCccceecce----eeEEEcCCCceEEEEecC-----CcceE--EEEec-ceeeeeccCCC
Q 005459          345 IRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEG-----SSERV--LIFSF-GKCCLNRGVSG  412 (696)
Q Consensus       345 l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~-----~~~~v--~~~~~-~~~~~s~~~d~  412 (696)
                      ++.+....+.++.+.|++    +.+++..    .+..+++++..++.....     +....  ..+.. ++.+++...++
T Consensus        71 ~~~~~~~~~~~~~~~~dG----~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~  146 (276)
T 3no2_A           71 IAAPAGCEMQTARILPDG----NALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS  146 (276)
T ss_dssp             EECCTTCEEEEEEECTTS----CEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred             EcCCCCccccccEECCCC----CEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC
Confidence            876433457788888988    7776543    566677755544433211     11111  23333 66677777777


Q ss_pred             CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       413 ~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                      .+..++.. |+.             +|       +|.... ...++.+.++|+.+++++.++.+ .+|..+|+
T Consensus       147 ~v~~~d~~-G~~-------------~w-------~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~  197 (276)
T 3no2_A          147 EVREIAPN-GQL-------------LN-------SVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQLNLESNR  197 (276)
T ss_dssp             EEEEECTT-SCE-------------EE-------EEECSS-CCCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred             EEEEECCC-CCE-------------EE-------EEECCC-CccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence            77777654 432             33       222222 34567889999999998888888 99999886

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.97  E-value=5.5e-07  Score=91.27  Aligned_cols=249  Identities=9%  Similarity=0.021  Sum_probs=141.7

Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeeccee----cCCCCeE-EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v-~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      ++.++|+++++...++.+..++.. ++..    ..+...+ .+++++++++.++...++.|..|+.+  ++ ...+... 
T Consensus        21 ~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~-~~~~~~~-   95 (299)
T 2z2n_A           21 TVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK--GI-IKEYTLP-   95 (299)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SC-EEEEECS-
T ss_pred             EECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC--Cc-EEEEeCC-
Confidence            356777777765555666666654 2211    1122334 49999999988887778999999875  22 2223220 


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM  376 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~  376 (696)
                           .....+..++++|||+.+++...++.|.+|+..+......+... ...+..++++|++    ..+++..   .+.
T Consensus        96 -----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~-~~~~~~i~~~~~g----~l~v~~~~~~~i~  165 (299)
T 2z2n_A           96 -----NPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNK-GSYPSFITLGSDN----ALWFTENQNNAIG  165 (299)
T ss_dssp             -----STTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSST-TCCEEEEEECTTS----CEEEEETTTTEEE
T ss_pred             -----CcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCC-CCCCceEEEcCCC----CEEEEeCCCCEEE
Confidence                 13456899999999998888777889999998433222222222 3457788888887    6666432   677


Q ss_pred             EEcCCCceEEEE-ecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCC
Q 005459          377 QWDEYGYRLYAI-EEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN  452 (696)
Q Consensus       377 ~W~~~~~~l~~~-~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  452 (696)
                      .|+. ++++... ...+...+  ++++. ++..++...++.+..++. .+.               ......+    .+.
T Consensus       166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~---------------~~~~~~~----~~~  224 (299)
T 2z2n_A          166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE---------------ITEFKIP----TPN  224 (299)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC---------------EEEEECS----STT
T ss_pred             EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc---------------EEEEECC----CCC
Confidence            7887 4444332 22222223  22333 333333223333333332 111               1111111    234


Q ss_pred             CceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEE
Q 005459          453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVC  512 (696)
Q Consensus       453 ~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~  512 (696)
                      ..+..++++++|+..++...++.+ .|+. +++.+.+.....  ...+.+++..++.+.++
T Consensus       225 ~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~--~~~~~~i~~~~g~l~v~  282 (299)
T 2z2n_A          225 ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIK--SAEPHGICFDGETIWFA  282 (299)
T ss_dssp             CCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSS--SCCEEEEEECSSCEEEE
T ss_pred             CCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCC--CCccceEEecCCCEEEE
Confidence            568899999999976666566777 9998 565554422111  12245555544455544

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.95  E-value=6.9e-07  Score=90.50  Aligned_cols=222  Identities=6%  Similarity=-0.048  Sum_probs=126.1

Q ss_pred             EEeCCcEEEEeeccCCceeeeeeec-cee--cCCC-CeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKI-DKE--LGSG-DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG  301 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~-~~~--~~~~-~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~  301 (696)
                      +.++|+++++...++.+..++.... +..  .... .+..+++.|++++.++...++.|.+|+. + ++.. .+...   
T Consensus        64 ~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~-g~~~-~~~~~---  137 (299)
T 2z2n_A           64 ISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-D-GKIR-EYELP---  137 (299)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T-CCEE-EEECS---
T ss_pred             ECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-C-CCEE-EecCC---
Confidence            5566666665544555555553211 011  1122 3344999999999988888899999987 3 3332 22210   


Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEE-eecccccceecccccCCCCCCccceecc---eeeEE
Q 005459          302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST-IRQISLSSISSPIVKPNQDCKYEPLMSG---TSMMQ  377 (696)
Q Consensus       302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~-l~~~~~~~v~~~~~sp~~~~~~~~l~sg---~~~~~  377 (696)
                         .+...+..++++|+|+..++...++.|..|+. +++.... +... ...+..+++++++    ..+++.   ..+..
T Consensus       138 ---~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g----~l~v~~~~~~~i~~  208 (299)
T 2z2n_A          138 ---NKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTP-ASGPVGITKGNDD----ALWFVEIIGNKIGR  208 (299)
T ss_dssp             ---STTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECTTS----SEEEEETTTTEEEE
T ss_pred             ---CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCC-CCcceeEEECCCC----CEEEEccCCceEEE
Confidence               13456899999999998888777889999999 5544332 2222 3456778888887    666543   26778


Q ss_pred             EcCCCceEEEE-ecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC
Q 005459          378 WDEYGYRLYAI-EEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW  453 (696)
Q Consensus       378 W~~~~~~l~~~-~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  453 (696)
                      |+. +++.... ...+...+  +.++. ++..++...++.+..++. .+  +             .....++    .+..
T Consensus       209 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g--~-------------~~~~~~~----~~~~  267 (299)
T 2z2n_A          209 ITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NN--I-------------IEEYPIQ----IKSA  267 (299)
T ss_dssp             ECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TT--E-------------EEEEECS----SSSC
T ss_pred             ECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CC--c-------------eEEEeCC----CCCC
Confidence            888 4443322 22222333  22332 332233223333333332 11  1             1111111    2345


Q ss_pred             ceEEEEEcCCCCEEEEEeCCccEEEEccCCc
Q 005459          454 PVQHVAASKDGMFLAVAGLHGLILYDIRQKK  484 (696)
Q Consensus       454 ~I~~va~s~dG~~la~ag~dG~i~w~~~sg~  484 (696)
                      .+.++++ ++|+..++...+|+..++..+++
T Consensus       268 ~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~~  297 (299)
T 2z2n_A          268 EPHGICF-DGETIWFAMECDKIGKLTLIKDN  297 (299)
T ss_dssp             CEEEEEE-CSSCEEEEETTTEEEEEEEC---
T ss_pred             ccceEEe-cCCCEEEEecCCcEEEEEcCccc
Confidence            6889999 99998777665555588877654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.93  E-value=6.6e-08  Score=96.86  Aligned_cols=128  Identities=7%  Similarity=0.024  Sum_probs=82.2

Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeeccee---cCC-CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGS-GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW  300 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~-~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~  300 (696)
                      ++.++|+++++...++.+..++.......   ... ..+..++++|+++++++...++.|.+|+.+. .........   
T Consensus       114 ~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~~~~---  189 (270)
T 1rwi_B          114 AVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES-NNQVVLPFT---  189 (270)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT-CCEEECCCS---
T ss_pred             EECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC-CceEeeccc---
Confidence            35677777776666666666653322111   111 2334499999999888888889999999875 332211111   


Q ss_pred             CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459          301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       301 ~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                           +...+..|+++|+|+.+++...++.|.+|+..+..... +...+...+.+++++|++
T Consensus       190 -----~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g  245 (270)
T 1rwi_B          190 -----DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDR  245 (270)
T ss_dssp             -----SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTC
T ss_pred             -----CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCC
Confidence                 33668999999999888888788999999987764332 221112345666666665

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.91  E-value=2.2e-07  Score=96.57  Aligned_cols=224  Identities=6%  Similarity=-0.007  Sum_probs=141.7

Q ss_pred             eCCcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCC
Q 005459          228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM  304 (696)
Q Consensus       228 ~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~  304 (696)
                      .+++++++...++++.++|..+++..   .....+..+++++++++.++...++.|.+||..+ .+....+....   ..
T Consensus        52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t-~~~~~~i~~g~---~~  127 (328)
T 3dsm_A           52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT-YEITGYIECPD---MD  127 (328)
T ss_dssp             ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT-TEEEEEEECTT---CC
T ss_pred             ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC-CeEEEEEEcCC---cc
Confidence            46777777777788888887765442   2334555599999997666665899999999987 66666665411   00


Q ss_pred             CCCCCeEEEEECCCCCeEEEEE-cCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecc-----------
Q 005459          305 DDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-----------  372 (696)
Q Consensus       305 ~h~g~V~~l~~spdg~~lasg~-~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg-----------  372 (696)
                      ++......|++ .+++.+++.+ .+++|.++|+.+++...++...  .....++++|++    +.+++.           
T Consensus       128 ~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~~p~~i~~~~dG----~l~v~~~~~~~~~~~~~  200 (328)
T 3dsm_A          128 MESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG--IQPTSLVMDKYN----KMWTITDGGYEGSPYGY  200 (328)
T ss_dssp             TTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS--SCBCCCEECTTS----EEEEEBCCBCTTCSSCB
T ss_pred             ccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC--CCccceEEcCCC----CEEEEECCCccCCcccc
Confidence            11124556777 4555555555 4899999999999988887653  235678888887    555443           


Q ss_pred             --eeeEEEcCCCceEEEEecC---CcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCe
Q 005459          373 --TSMMQWDEYGYRLYAIEEG---SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV  446 (696)
Q Consensus       373 --~~~~~W~~~~~~l~~~~~~---~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  446 (696)
                        ..+..++++++++.....-   ....-+++++ ++.+..++.  .+..+|...+..                   ...
T Consensus       201 ~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~-------------------~~~  259 (328)
T 3dsm_A          201 EAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV-------------------PVR  259 (328)
T ss_dssp             CCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC-------------------CSS
T ss_pred             CCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCce-------------------eee
Confidence              2477889888887655432   1222366676 566554443  555555433321                   001


Q ss_pred             eeec-CCCceEEEEEcCC-CCEEEEE----eCCccE-EEEccCCc
Q 005459          447 SYIS-QNWPVQHVAASKD-GMFLAVA----GLHGLI-LYDIRQKK  484 (696)
Q Consensus       447 ~~~~-~~~~I~~va~s~d-G~~la~a----g~dG~i-~w~~~sg~  484 (696)
                      .+.. .......++++|+ |+..++.    ..+|.+ +||.. |+
T Consensus       260 ~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          260 PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred             eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence            1111 1345788999995 5555554    567888 99988 54

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.91  E-value=4e-07  Score=101.57  Aligned_cols=269  Identities=13%  Similarity=0.062  Sum_probs=156.6

Q ss_pred             EcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc--CCee
Q 005459          264 IAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--GCRL  341 (696)
Q Consensus       264 ~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~--~~~~  341 (696)
                      .+|++.++++...+++|.++|..+ .+.+.++..         ...+..++|||||+++++++.|+.|.+||+.  +.+.
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t-~~v~~~i~~---------g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~  232 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGST-YEIKTVLDT---------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT  232 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTT-CCEEEEEEC---------SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE
T ss_pred             cCCCceEEEEeCCCCeEEEEECCC-CeEEEEEeC---------CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE
Confidence            345566777888899999999988 777777765         2356799999999999999999999999995  7777


Q ss_pred             EEEeecccccceeccccc----CCCCCCccceecce----eeEEEcCCCceEEEEecCC----------cc-eEE--EEe
Q 005459          342 MSTIRQISLSSISSPIVK----PNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGS----------SE-RVL--IFS  400 (696)
Q Consensus       342 ~~~l~~~~~~~v~~~~~s----p~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~~----------~~-~v~--~~~  400 (696)
                      +.++... . ....++|+    |++    +.+..+.    ++.++|..+.+++....-.          .. ++.  ..+
T Consensus       233 v~~i~~G-~-~P~~ia~s~~~~pDG----k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s  306 (567)
T 1qks_A          233 VAEIKIG-S-EARSIETSKMEGWED----KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS  306 (567)
T ss_dssp             EEEEECC-S-EEEEEEECCSTTCTT----TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred             eEEEecC-C-CCceeEEccccCCCC----CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEc
Confidence            7777753 2 25678899    688    6665443    7788898888877654311          01 221  112


Q ss_pred             c--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEe-CCccE-
Q 005459          401 F--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-  476 (696)
Q Consensus       401 ~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag-~dG~i-  476 (696)
                      .  ...+++...++.+.+.+....            ....       ..............|+|||+|+.++. .++.+ 
T Consensus       307 ~~~~~~vv~~~~~g~v~~vd~~~~------------~~~~-------v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~  367 (567)
T 1qks_A          307 HYRPEFIVNVKETGKILLVDYTDL------------NNLK-------TTEISAERFLHDGGLDGSHRYFITAANARNKLV  367 (567)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTCS------------SEEE-------EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred             CCCCEEEEEecCCCeEEEEecCCC------------ccce-------eeeeeccccccCceECCCCCEEEEEeCCCCeEE
Confidence            1  122222223333322222111            1000       01112233466789999999987765 45677 


Q ss_pred             EEEccCCceEecCCc-cceeeeEEEeEee-eC--cEEEEEEeecCCCeEEEEEeeCCCC---Cc-cceeEEeecCCc-c-
Q 005459          477 LYDIRQKKWRVFGDI-TQEQKIQSKGLLW-LG--KIIVVCNYIDSSNTYELLFYPRYHL---DQ-SSLLCRKSLLAK-P-  546 (696)
Q Consensus       477 ~w~~~sg~w~~f~~~-~~e~~~~v~~~~w-~~--~~lv~~~~~~~~~~~~lr~y~~~~l---~~-~~~~~~~~~~~~-~-  546 (696)
                      ++|..+++-...... .... -.-+|..| .+  ..+.+.  .. -.+..|.+++.+.-   +. -....+.+.... + 
T Consensus       368 ViD~~t~kl~~~i~vgg~~P-hpg~g~~~~~p~~g~v~~t--~~-~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~  443 (567)
T 1qks_A          368 VIDTKEGKLVAIEDTGGQTP-HPGRGANFVHPTFGPVWAT--SH-MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSL  443 (567)
T ss_dssp             EEETTTTEEEEEEECSSSSB-CCTTCEEEEETTTEEEEEE--EB-SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC
T ss_pred             EEECCCCcEEEEEeccCcCC-CCccceeeECCCCCcEEEe--CC-CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCE
Confidence            999999864321111 0000 00023344 22  223222  11 23356888877521   11 124444444432 2 


Q ss_pred             -EEEEccCCEEEEEEc-------CceEEEEEEE
Q 005459          547 -IVMDVYEDYILVTYR-------PFDVHIFHVK  571 (696)
Q Consensus       547 -l~~~~~~~~llv~~~-------d~~~~l~~~~  571 (696)
                       +...+++.++.|...       +.++.+|++.
T Consensus       444 ~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~  476 (567)
T 1qks_A          444 FIKTHPNSQYLYVDATLNPEAEISGSVAVFDIK  476 (567)
T ss_dssp             CEECCTTCSEEEEECTTCSSHHHHTCEEEEEGG
T ss_pred             EEEeCCCCCeEEEecCCCCCcccCceEEEEECC
Confidence             445678888888442       2477777654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.86  E-value=6.4e-07  Score=93.02  Aligned_cols=230  Identities=10%  Similarity=-0.032  Sum_probs=136.7

Q ss_pred             EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee
Q 005459          262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL  341 (696)
Q Consensus       262 v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~  341 (696)
                      +++. ++++.++...+++|.+||..+ ++.+.++..         ......++++|||+..++...++.|.+||..+++.
T Consensus        49 i~~~-~~~lyv~~~~~~~v~viD~~t-~~~~~~i~~---------~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~  117 (328)
T 3dsm_A           49 MVIR-DGIGWIVVNNSHVIFAIDINT-FKEVGRITG---------FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI  117 (328)
T ss_dssp             EEEE-TTEEEEEEGGGTEEEEEETTT-CCEEEEEEC---------CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE
T ss_pred             EEEE-CCEEEEEEcCCCEEEEEECcc-cEEEEEcCC---------CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE
Confidence            6664 466777777789999999988 777777743         45688999999996555554789999999999988


Q ss_pred             EEEeecccc----cceecccccCCCCCCccceecc----eeeEEEcCCCceEEEEecCCcce-EEEEec-ceeeeeccCC
Q 005459          342 MSTIRQISL----SSISSPIVKPNQDCKYEPLMSG----TSMMQWDEYGYRLYAIEEGSSER-VLIFSF-GKCCLNRGVS  411 (696)
Q Consensus       342 ~~~l~~~~~----~~v~~~~~sp~~~~~~~~l~sg----~~~~~W~~~~~~l~~~~~~~~~~-v~~~~~-~~~~~s~~~d  411 (696)
                      ..++.....    .....+++ .++    ..+++.    .++.++|++++++.......... -+.+++ ++..++...+
T Consensus       118 ~~~i~~g~~~~~~~~p~~i~~-~~~----~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~  192 (328)
T 3dsm_A          118 TGYIECPDMDMESGSTEQMVQ-YGK----YVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGG  192 (328)
T ss_dssp             EEEEECTTCCTTTCBCCCEEE-ETT----EEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCB
T ss_pred             EEEEEcCCccccCCCcceEEE-ECC----EEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCC
Confidence            877764310    12334444 222    444432    26778888887776655322111 144455 5544443332


Q ss_pred             ----------CCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459          412 ----------GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       412 ----------~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~  480 (696)
                                +.+..+|..+++.              -..+.++.     ....+.++|+|||+++.++..  .+ +||.
T Consensus       193 ~~~~~~~~~~~~v~~id~~t~~v--------------~~~~~~~~-----g~~p~~la~~~d~~~lyv~~~--~v~~~d~  251 (328)
T 3dsm_A          193 YEGSPYGYEAPSLYRIDAETFTV--------------EKQFKFKL-----GDWPSEVQLNGTRDTLYWINN--DIWRMPV  251 (328)
T ss_dssp             CTTCSSCBCCCEEEEEETTTTEE--------------EEEEECCT-----TCCCEEEEECTTSCEEEEESS--SEEEEET
T ss_pred             ccCCccccCCceEEEEECCCCeE--------------EEEEecCC-----CCCceeEEEecCCCEEEEEcc--EEEEEEC
Confidence                      2333333211110              01111111     224689999999999988866  77 9999


Q ss_pred             cCCceEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459          481 RQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       481 ~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      .+++.....-. ........++++.  ++.+.+++..+-.....|.+|+.+
T Consensus       252 ~t~~~~~~~~~-~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          252 EADRVPVRPFL-EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             TCSSCCSSCSB-CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             CCCceeeeeee-cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            98874211100 0001225578885  456666642111345788888774

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.84  E-value=7.5e-08  Score=101.55  Aligned_cols=173  Identities=10%  Similarity=0.017  Sum_probs=114.4

Q ss_pred             EE-EEEcCCCcEEEEEecCCeEEEEEccCCCc--------eee-EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC
Q 005459          260 VC-ASIAPEQQILAVGTRRGVVELYDLAESAS--------LIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR  329 (696)
Q Consensus       260 v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~--------~~~-~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg  329 (696)
                      +. +++++++.++++|+.|+ +++|++++..+        ... ....        +.+ |+.|+|  ||+.|+++ .++
T Consensus        40 ~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~--------lp~-V~~l~f--d~~~L~v~-~~~  106 (388)
T 1xip_A           40 LQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--------IPD-VIFVCF--HGDQVLVS-TRN  106 (388)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--------CTT-EEEEEE--ETTEEEEE-ESS
T ss_pred             ccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee--------CCC-eeEEEE--CCCEEEEE-cCC
Confidence            44 99999999999999985 55699765210        111 1222        566 999999  99999999 889


Q ss_pred             cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEec-ceeeeec
Q 005459          330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNR  408 (696)
Q Consensus       330 ~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~  408 (696)
                      +|++||+........+..+ ...                                           +..+.+ ...++.+
T Consensus       107 ~l~v~dv~sl~~~~~~~~~-~~~-------------------------------------------v~~i~~~~p~~av~  142 (388)
T 1xip_A          107 ALYSLDLEELSEFRTVTSF-EKP-------------------------------------------VFQLKNVNNTLVIL  142 (388)
T ss_dssp             EEEEEESSSTTCEEEEEEC-SSC-------------------------------------------EEEEEECSSEEEEE
T ss_pred             cEEEEEchhhhccCcccee-ecc-------------------------------------------eeeEEecCCCEEEE
Confidence            9999999765433232222 100                                           001111 1115666


Q ss_pred             cCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc---
Q 005459          409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK---  484 (696)
Q Consensus       409 ~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~---  484 (696)
                      ..||++.+|++..+...                        .+...|++++|||+|  +++|..||.+ +|+..+++   
T Consensus       143 ~~dG~L~v~dl~~~~~~------------------------~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~  196 (388)
T 1xip_A          143 NSVNDLSALDLRTKSTK------------------------QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEK  196 (388)
T ss_dssp             ETTSEEEEEETTTCCEE------------------------EEEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEE
T ss_pred             ECCCCEEEEEccCCccc------------------------cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccc
Confidence            78899999987654431                        122369999999999  7889999999 99998887   


Q ss_pred             eEecCCcc--ce---eeeEEEeEeeeCcEEEEEEee
Q 005459          485 WRVFGDIT--QE---QKIQSKGLLWLGKIIVVCNYI  515 (696)
Q Consensus       485 w~~f~~~~--~e---~~~~v~~~~w~~~~lv~~~~~  515 (696)
                      -+.+....  +|   .++.|.+++|..+......|.
T Consensus       197 k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          197 QFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             cceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            33442111  11   357799999986655444554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.81  E-value=1.9e-06  Score=88.13  Aligned_cols=106  Identities=8%  Similarity=0.052  Sum_probs=73.6

Q ss_pred             EEEE----eCCcE-EEEeeccCCceeeeee-ecc-----ee---cCCC-CeEE-EEEcCCCcEEEEEecCCeEEEEEccC
Q 005459          224 FVLY----SNGQL-MSCSVSKKGLKLAEFI-KID-----KE---LGSG-DAVC-ASIAPEQQILAVGTRRGVVELYDLAE  287 (696)
Q Consensus       224 ~~~s----~dG~~-~~~~~~d~~~~~~~~~-~~~-----~~---~~~~-~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~  287 (696)
                      ++++    +||+. +++...++.+..|+.. .++     ..   .++. .... ++++++|++.++...++.|.+||.++
T Consensus       177 i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~  256 (314)
T 1pjx_A          177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred             EEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC
Confidence            4567    78854 4444456677777754 121     11   2232 3334 99999999999888899999999875


Q ss_pred             CCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE-EcCCcEEEEEccC
Q 005459          288 SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSVSG  338 (696)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg-~~Dg~v~vW~~~~  338 (696)
                       ++.+..+..        +...+.+++|+|||+.|.++ ..+++|..|++..
T Consensus       257 -g~~~~~~~~--------~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          257 -GQPKMRIRC--------PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             -BSCSEEEEC--------SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             -CcEeEEEeC--------CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence             555666665        56789999999999955554 4567899998764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.80  E-value=2.3e-06  Score=86.68  Aligned_cols=253  Identities=6%  Similarity=-0.001  Sum_probs=139.6

Q ss_pred             eEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCc
Q 005459           23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK  101 (696)
Q Consensus        23 ~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~  101 (696)
                      .-++++++|+++++. .++.|.+|+.. ...  ..+...    ........+++.|||+..++...++.|..|+.. +..
T Consensus        23 ~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~--~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           23 YGITSSEDGKVWFTQHKANKISSLDQS-GRI--KEFEVP----TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTT-SCE--EEEECS----STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             ceeeECCCCCEEEEcCCCCeEEEECCC-Cce--EEEECC----CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            347889999988877 46789999985 322  222211    112456789999999977776667888888764 221


Q ss_pred             ccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeC-CCeEEEEec-CCcEEEEecCCccccceeeccCCCCCccc
Q 005459          102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD-NKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVA  179 (696)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~-~~~llv~t~-~g~i~~~~w~~~~~~~~~~~~~p~~~~~~  179 (696)
                      ....                      .......+.++..+ ...++++.. ++.|.+++.++... ...           
T Consensus        95 ~~~~----------------------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~-~~~-----------  140 (300)
T 2qc5_A           95 TEYP----------------------LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIY-EYD-----------  140 (300)
T ss_dssp             EEEE----------------------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEE-EEE-----------
T ss_pred             EEec----------------------CCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEE-Ecc-----------
Confidence            1000                      00001122333332 234555554 66777765432111 000           


Q ss_pred             ccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce--e--cC
Q 005459          180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--E--LG  255 (696)
Q Consensus       180 ~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~--~--~~  255 (696)
                                              .......+..+.          +.++|+++++...++.+..++. .++.  .  ..
T Consensus       141 ------------------------~~~~~~~~~~i~----------~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~  185 (300)
T 2qc5_A          141 ------------------------LPNKGSYPAFIT----------LGSDNALWFTENQNNSIGRITN-TGKLEEYPLPT  185 (300)
T ss_dssp             ------------------------CSSTTCCEEEEE----------ECTTSSEEEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred             ------------------------CCCCCCCceeEE----------ECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCC
Confidence                                    000111234443          4556665554444444544443 1111  1  12


Q ss_pred             C-CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459          256 S-GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW  334 (696)
Q Consensus       256 ~-~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW  334 (696)
                      + ..+..+++++++++.++...++.|.+|+. + +.... +...      .+...+.+|+++|+|+..++...++.|..+
T Consensus       186 ~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~-g~~~~-~~~~------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  256 (300)
T 2qc5_A          186 NAAAPVGITSGNDGALWFVEIMGNKIGRITT-T-GEISE-YDIP------TPNARPHAITAGKNSEIWFTEWGANQIGRI  256 (300)
T ss_dssp             TTCCEEEEEECTTSSEEEEETTTTEEEEECT-T-CCEEE-EECS------STTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred             CCCCcceEEECCCCCEEEEccCCCEEEEEcC-C-CcEEE-EECC------CCCCCceEEEECCCCCEEEeccCCCeEEEE
Confidence            2 23445999999998888777889999987 3 33322 2210      145668999999999977777677999999


Q ss_pred             EccCCeeEEEeecccccceecccccCCC
Q 005459          335 SVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       335 ~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      +..+......+... ...+.++++++++
T Consensus       257 ~~~g~~~~~~~~~~-~~~~~~i~~~~~g  283 (300)
T 2qc5_A          257 TNDNTIQEYQLQTE-NAEPHGITFGKDG  283 (300)
T ss_dssp             CTTSCEEEEECCST-TCCCCCEEECTTS
T ss_pred             CCCCcEEEEECCcc-CCccceeEeCCCC
Confidence            98543222122211 2334555555544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.80  E-value=7.2e-06  Score=86.62  Aligned_cols=291  Identities=10%  Similarity=-0.037  Sum_probs=156.7

Q ss_pred             EEEeCCcEEEEE-c-c-C---eEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec----------Cc
Q 005459           26 YFKVNNGLLLIA-S-P-C---HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----------SL   89 (696)
Q Consensus        26 ~fs~dg~lla~~-~-~-~---~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~----------dg   89 (696)
                      ...||++++.+. . . +   +|.++|.. ....+..+.-      ..+  -.+++||||+.+.++..          ++
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~-t~~~~~~i~~------g~~--p~i~~spDg~~lyv~n~~~~~~~rg~~~~   97 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAG-SGSILGHVNG------GFL--PNPVAAHSGSEFALASTSFSRIAKGKRTD   97 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECC-CCeEEEEecC------CCC--CCeEECCCCCEEEEEeccccccccCCCCC
Confidence            456888765444 2 2 2   88999986 4444433221      123  38999999999999863          57


Q ss_pred             EEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEec--CCcEEEEecCCccccce
Q 005459           90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS--DGSLYSISWKGEFYGAF  167 (696)
Q Consensus        90 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~--~g~i~~~~w~~~~~~~~  167 (696)
                      .|.+||+.+.+....+....             ..+ ...+....-..+++|+++++++..  ++.|.+++ +....  .
T Consensus        98 ~v~viD~~t~~~~~~i~~~~-------------~~~-~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~--~  160 (373)
T 2mad_H           98 YVEVFDPVTFLPIADIELPD-------------APR-FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS--D  160 (373)
T ss_pred             eEEEEECCCCcEEEEEECCC-------------ccc-cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE--E
Confidence            89999986433211110000             000 000111122367889999999874  46788876 43221  1


Q ss_pred             eeccCCCCCccccc-ccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeee
Q 005459          168 ELVHSSNDSSVAAL-SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAE  246 (696)
Q Consensus       168 ~~~~~p~~~~~~~~-~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~  246 (696)
                                  .. ++                       ....+.  .+......++.+.+||++++... ++... ..
T Consensus       161 ------------~~~i~-----------------------~~~~~~--~~~~~~~~~~~~~~dg~~~~vd~-~g~~~-~~  201 (373)
T 2mad_H          161 ------------DQLLS-----------------------SPTCYH--IHPGAPSTFYLLCAQGGLAKTDH-AGGAA-GA  201 (373)
T ss_pred             ------------eEEcC-----------------------CCceEE--EEeCCCceEEEEcCCCCEEEEEC-CCcEE-EE
Confidence                        00 00                       000110  01111123445667777666555 33222 00


Q ss_pred             eeecceecCCCCeE--EEEEcCCCcEEEEEecCCeEEEEEccCCC-ceeeEEeeccCC--CCCCCCCCeEEEEECCCCCe
Q 005459          247 FIKIDKELGSGDAV--CASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYDWG--YSMDDTGPVSCIAWTPDNSA  321 (696)
Q Consensus       247 ~~~~~~~~~~~~~v--~v~~sp~~~~la~g~~dg~v~vw~~~~~~-~~~~~~~~~~~~--~~~~h~g~V~~l~~spdg~~  321 (696)
                      ........+ ...+  ..++.+++..++..+.++.+.+.|+.... ..+..+......  ...-..+....++++|||+.
T Consensus       202 ~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~  280 (373)
T 2mad_H          202 GLVGAMLTA-AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG  280 (373)
T ss_pred             EeccccccC-CcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence            000000011 1122  25667776665555578899998886521 222222210000  00001234556889999998


Q ss_pred             EEEEEc----------CCcEEEEEccCCeeEEEeecccccceecccccCCCCCCcc-ceecc---e-eeEEEcCCCceEE
Q 005459          322 FAVGWK----------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLMSG---T-SMMQWDEYGYRLY  386 (696)
Q Consensus       322 lasg~~----------Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~-~l~sg---~-~~~~W~~~~~~l~  386 (696)
                      |.++..          ++.|.+.|+.+++.+.++...  .....++|+|++    + .+.++   . .+.++|..+++.+
T Consensus       281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg----~~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDG----GPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCC----CeEEEEEcCCCCeEEEEECCCCCEE
Confidence            888653          357999999999999988754  246788899988    5 33322   1 6777777777766


Q ss_pred             EE
Q 005459          387 AI  388 (696)
Q Consensus       387 ~~  388 (696)
                      ..
T Consensus       355 ~~  356 (373)
T 2mad_H          355 QS  356 (373)
T ss_pred             ee
Confidence            55

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.79  E-value=8.2e-08  Score=101.26  Aligned_cols=118  Identities=18%  Similarity=0.136  Sum_probs=81.5

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecc-------------eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKID-------------KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA  289 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~-------------~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~  289 (696)
                      +++++++.++++++.++ +.+|+....+             ....+.. +. ++|  |+++|+++ .+|.|++||+++ .
T Consensus        43 Lais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~s-l  116 (388)
T 1xip_A           43 LDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEE-L  116 (388)
T ss_dssp             EEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSS-T
T ss_pred             EEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchh-h
Confidence            45677777777766653 4446543222             1123455 55 999  99999999 899999999987 4


Q ss_pred             ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459          290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       290 ~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      ........        |..+|.++.+.+..  +|++..||++.+||+.++.... +    ...|++++|+|++
T Consensus       117 ~~~~~~~~--------~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-~----~~~Vs~v~WSpkG  174 (388)
T 1xip_A          117 SEFRTVTS--------FEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-L----AQNVTSFDVTNSQ  174 (388)
T ss_dssp             TCEEEEEE--------CSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-E----EESEEEEEECSSE
T ss_pred             hccCccce--------eecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-c----cCCceEEEEcCCc
Confidence            44455556        77789999888753  9999999999999998776542 1    2235555555543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.75  E-value=9.3e-07  Score=94.47  Aligned_cols=75  Identities=8%  Similarity=0.110  Sum_probs=61.8

Q ss_pred             EEEcCCCcEEEEEec----------CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEE-cCC
Q 005459          262 ASIAPEQQILAVGTR----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGW-KSR  329 (696)
Q Consensus       262 v~~sp~~~~la~g~~----------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~-~Dg  329 (696)
                      ++++|+++.+.+...          +++|.+.|+.+ .+.+.++..         .+....|+|+|||+ ++++.. .++
T Consensus       324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~v---------g~~P~gia~spDg~~~lyv~n~~s~  393 (426)
T 3c75_H          324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIEL---------GHEIDSINVSQDAEPLLYALSAGTQ  393 (426)
T ss_dssp             EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEE---------EEEECEEEECCSSSCEEEEEETTTT
T ss_pred             eEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEEC---------CCCcCeEEEccCCCEEEEEEcCCCC
Confidence            689999887776643          35899999988 788888875         22478999999999 888887 589


Q ss_pred             cEEEEEccCCeeEEEee
Q 005459          330 GLTVWSVSGCRLMSTIR  346 (696)
Q Consensus       330 ~v~vW~~~~~~~~~~l~  346 (696)
                      .|.++|+.+.+.+.++.
T Consensus       394 ~VsVID~~t~kvv~tI~  410 (426)
T 3c75_H          394 TLHIYDAATGEELRSVD  410 (426)
T ss_dssp             EEEEEETTTCCEEEEEC
T ss_pred             eEEEEECCCCCEEEEec
Confidence            99999999999998873

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.71  E-value=9.2e-07  Score=90.53  Aligned_cols=226  Identities=8%  Similarity=0.026  Sum_probs=120.5

Q ss_pred             EEEEeCCcEEEE-------eeccCCceeeeeeeccee--c-----CCCC-eEEEEEcCC-CcEEEEEecCCeEEEEEccC
Q 005459          224 FVLYSNGQLMSC-------SVSKKGLKLAEFIKIDKE--L-----GSGD-AVCASIAPE-QQILAVGTRRGVVELYDLAE  287 (696)
Q Consensus       224 ~~~s~dG~~~~~-------~~~d~~~~~~~~~~~~~~--~-----~~~~-~v~v~~sp~-~~~la~g~~dg~v~vw~~~~  287 (696)
                      +++.++|+++++       ...++.+..|+..+++..  .     ++.. +..++++++ ++++++.. ++.|.+||.+ 
T Consensus        23 ~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-  100 (314)
T 1pjx_A           23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-  100 (314)
T ss_dssp             EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETT-
T ss_pred             ceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-
Confidence            345677877776       556667777775433221  1     1323 344999999 77666554 4478888876 


Q ss_pred             CCceeeEE-eeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC---------------CcEEEEEccCCeeEEEeeccccc
Q 005459          288 SASLIRTV-SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---------------RGLTVWSVSGCRLMSTIRQISLS  351 (696)
Q Consensus       288 ~~~~~~~~-~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D---------------g~v~vW~~~~~~~~~~l~~~~~~  351 (696)
                       ++.. .+ ...   ....+...+.+++++|||+.+++...+               +.|..++.. ++.......  ..
T Consensus       101 -g~~~-~~~~~~---~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~  172 (314)
T 1pjx_A          101 -GTFE-EIAKKD---SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--FQ  172 (314)
T ss_dssp             -SCEE-ECCSBC---TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--ES
T ss_pred             -CCEE-EEEecc---CCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--CC
Confidence             3322 22 110   000123458899999999988877665               567777766 433322222  22


Q ss_pred             ceeccccc----CCCCCCccce-ecc---eeeEEEcCC-Cce-----EEEEecCCc-ceE--EEEec-ceeeeeccCCCC
Q 005459          352 SISSPIVK----PNQDCKYEPL-MSG---TSMMQWDEY-GYR-----LYAIEEGSS-ERV--LIFSF-GKCCLNRGVSGM  413 (696)
Q Consensus       352 ~v~~~~~s----p~~~~~~~~l-~sg---~~~~~W~~~-~~~-----l~~~~~~~~-~~v--~~~~~-~~~~~s~~~d~~  413 (696)
                      ....++++    |++    +.+ ++.   ..+..|+.+ .++     .+....++. ...  ++++. ++..++...++.
T Consensus       173 ~~~~i~~~~~~d~dg----~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~  248 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRP----YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             SEEEEEEEECTTSCE----EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             CcceEEEecccCCCC----CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence            34667777    776    432 322   156677754 333     222222221 122  22222 332232222333


Q ss_pred             ceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC-CccE-EEEccCC
Q 005459          414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL-HGLI-LYDIRQK  483 (696)
Q Consensus       414 ~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~-dG~i-~w~~~sg  483 (696)
                      +..|+..+++.                    ...+..+...+.+++|+|||++|.+++. ++.+ .|++...
T Consensus       249 i~~~d~~~g~~--------------------~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          249 IEVFGPDGGQP--------------------KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEECTTCBSC--------------------SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EEEEcCCCCcE--------------------eEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            33333221111                    1223334456899999999996666554 4566 8887654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.67  E-value=4.6e-06  Score=84.34  Aligned_cols=228  Identities=8%  Similarity=-0.006  Sum_probs=127.6

Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeeccee----cCC-CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGS-GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~-~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      ++.++|+++++...++.+..++.. ++..    ... ..+..+++.+++++.++...++.|..||.+  ++. ..+... 
T Consensus        26 ~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~--g~~-~~~~~~-  100 (300)
T 2qc5_A           26 TSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK--GGF-TEYPLP-  100 (300)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--SCE-EEEECS-
T ss_pred             eECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC--CCe-EEecCC-
Confidence            356677777765555666666544 2111    122 234449999999988887778999999876  232 223220 


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM  376 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~  376 (696)
                           .....+..+++.|+|+.+++...++.|..++..+......+... ...+..++++|++    ..+++..   .+.
T Consensus       101 -----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~~~~~~i~~d~~g----~l~v~~~~~~~i~  170 (300)
T 2qc5_A          101 -----QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNK-GSYPAFITLGSDN----ALWFTENQNNSIG  170 (300)
T ss_dssp             -----STTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSST-TCCEEEEEECTTS----SEEEEETTTTEEE
T ss_pred             -----CCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCC-CCCceeEEECCCC----CEEEEecCCCeEE
Confidence                 12356899999999998888777889999998843322223322 3457778888877    5555432   566


Q ss_pred             EEcCCCceEEEE-ecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCce
Q 005459          377 QWDEYGYRLYAI-EEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV  455 (696)
Q Consensus       377 ~W~~~~~~l~~~-~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I  455 (696)
                      .++.. ++.... ...+...+..+.+       ..++  .+|.......++..+...    ........+    .+...+
T Consensus       171 ~~~~~-g~~~~~~~~~~~~~~~~i~~-------d~~g--~l~v~~~~~~~i~~~~~~----g~~~~~~~~----~~~~~~  232 (300)
T 2qc5_A          171 RITNT-GKLEEYPLPTNAAAPVGITS-------GNDG--ALWFVEIMGNKIGRITTT----GEISEYDIP----TPNARP  232 (300)
T ss_dssp             EECTT-CCEEEEECSSTTCCEEEEEE-------CTTS--SEEEEETTTTEEEEECTT----CCEEEEECS----STTCCE
T ss_pred             EECCC-CcEEEeeCCCCCCCcceEEE-------CCCC--CEEEEccCCCEEEEEcCC----CcEEEEECC----CCCCCc
Confidence            67763 333222 1111122211111       1122  233333333334333321    011111112    233457


Q ss_pred             EEEEEcCCCCEEEEEeCCccE-EEEccCCceE
Q 005459          456 QHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR  486 (696)
Q Consensus       456 ~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~  486 (696)
                      ..++++++|+..++...++.+ .|+. +++..
T Consensus       233 ~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~  263 (300)
T 2qc5_A          233 HAITAGKNSEIWFTEWGANQIGRITN-DNTIQ  263 (300)
T ss_dssp             EEEEECSTTCEEEEETTTTEEEEECT-TSCEE
T ss_pred             eEEEECCCCCEEEeccCCCeEEEECC-CCcEE
Confidence            899999999966666556677 8887 45443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.65  E-value=1.4e-05  Score=83.77  Aligned_cols=274  Identities=11%  Similarity=0.027  Sum_probs=159.9

Q ss_pred             EEEcCCCcEEEEEec-----CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE----------
Q 005459          262 ASIAPEQQILAVGTR-----RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW----------  326 (696)
Q Consensus       262 v~~sp~~~~la~g~~-----dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~----------  326 (696)
                      ....|+++.+.+...     ++.|.+.|..+ .+.+.++..        -.++ . +++||||+.|.++.          
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t-~~v~~~I~v--------G~~P-~-va~spDG~~lyVan~~~~r~~~G~  106 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEA-GRVIGMIDG--------GFLP-N-PVVADDGSFIAHASTVFSRIARGE  106 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTT-TEEEEEEEE--------CSSC-E-EEECTTSSCEEEEEEEEEETTEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCC-CeEEEEEEC--------CCCC-c-EEECCCCCEEEEEcccccccccCC
Confidence            445688887777765     68999999988 788888876        3445 4 99999999988775          


Q ss_pred             cCCcEEEEEccCCeeEEEeeccc------ccceecccccCCCCCCcccee-cc----eeeEEEcCCCceEEEEecCCcce
Q 005459          327 KSRGLTVWSVSGCRLMSTIRQIS------LSSISSPIVKPNQDCKYEPLM-SG----TSMMQWDEYGYRLYAIEEGSSER  395 (696)
Q Consensus       327 ~Dg~v~vW~~~~~~~~~~l~~~~------~~~v~~~~~sp~~~~~~~~l~-sg----~~~~~W~~~~~~l~~~~~~~~~~  395 (696)
                      .++.|.+||..+.+.+.++.-..      ...-..++|+||+    +.+. +.    ..+-++|..+.+.+....-.. .
T Consensus       107 ~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG----k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~  181 (386)
T 3sjl_D          107 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG----KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-C  181 (386)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS----SEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E
T ss_pred             CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC----CEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-c
Confidence            36789999999999888875321      1134568899998    4332 21    267789999999887764321 1


Q ss_pred             EEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceE-EEEE-cCCCCEEEEEeC
Q 005459          396 VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ-HVAA-SKDGMFLAVAGL  472 (696)
Q Consensus       396 v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~-~va~-s~dG~~la~ag~  472 (696)
                      ...+.. .+.+++.+.|++....++.... ++....              ...+.....++. ..+| .+||+++. .+.
T Consensus       182 ~~~~P~g~~~~~~~~~DG~~~~v~~~~~g-~v~~~~--------------~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~  245 (386)
T 3sjl_D          182 YHIFPTAPDTFFMHCRDGSLAKVAFGTEG-TPEITH--------------TEVFHPEDEFLINHPAYSQKAGRLVW-PTY  245 (386)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEECCSSS-CCEEEE--------------CCCCSCTTSCBCSCCEEETTTTEEEE-EBT
T ss_pred             ceeecCCCceeEEECCCCCEEEEECCCCC-eEEEee--------------cceeccccccccccceeEcCCCcEEE-EeC
Confidence            222222 4455677788876655543311 111000              000001112222 1355 47887555 555


Q ss_pred             CccE-EEEccCCc------eEecCCccceeeeEEEe---Eeee--CcEEEEEEeec-----CCCeEEEEEeeCCCCCccc
Q 005459          473 HGLI-LYDIRQKK------WRVFGDITQEQKIQSKG---LLWL--GKIIVVCNYID-----SSNTYELLFYPRYHLDQSS  535 (696)
Q Consensus       473 dG~i-~w~~~sg~------w~~f~~~~~e~~~~v~~---~~w~--~~~lv~~~~~~-----~~~~~~lr~y~~~~l~~~~  535 (696)
                      +|.+ +.|..++.      |.+|.....+......+   +...  ++.+.++....     .....+|-+++..   ...
T Consensus       246 ~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~---t~k  322 (386)
T 3sjl_D          246 TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK---TGE  322 (386)
T ss_dssp             TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT---TCC
T ss_pred             CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC---CCe
Confidence            7889 99987653      44444322222222211   3333  45555542111     1124678888775   222


Q ss_pred             eeEEeecCCc--cEEEEccCC-EEEEEEc-CceEEEEEE
Q 005459          536 LLCRKSLLAK--PIVMDVYED-YILVTYR-PFDVHIFHV  570 (696)
Q Consensus       536 ~~~~~~~~~~--~l~~~~~~~-~llv~~~-d~~~~l~~~  570 (696)
                      ++.+.++..+  -+.+++++. .|+++.. ++++.+|+.
T Consensus       323 v~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          323 RLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             EEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred             EEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            4444444332  277788876 5555433 677877753

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.65  E-value=1.8e-06  Score=88.08  Aligned_cols=96  Identities=8%  Similarity=0.126  Sum_probs=68.9

Q ss_pred             EEEEcCCCcEE-EEEecCCeEEEEEcc-CCCcee--eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459          261 CASIAPEQQIL-AVGTRRGVVELYDLA-ESASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       261 ~v~~sp~~~~l-a~g~~dg~v~vw~~~-~~~~~~--~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~  336 (696)
                      -++|+||++.| ++.+.++.|.+|+++ ..+...  +.+....     .+.+....|+++++|+..++.+.++.|.+||.
T Consensus       153 gi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~-----~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~  227 (297)
T 3g4e_A          153 GLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE-----KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP  227 (297)
T ss_dssp             EEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC-----GGGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred             ceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC-----CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence            38999999865 555668999999985 223321  2222100     13456789999999998888888889999999


Q ss_pred             cCCeeEEEeecccccceeccccc-CCC
Q 005459          337 SGCRLMSTIRQISLSSISSPIVK-PNQ  362 (696)
Q Consensus       337 ~~~~~~~~l~~~~~~~v~~~~~s-p~~  362 (696)
                      .+++++..+..+ ...+++++|. |++
T Consensus       228 ~tG~~~~~i~~p-~~~~t~~~f~g~d~  253 (297)
T 3g4e_A          228 VTGKRLQTVKLP-VDKTTSCCFGGKNY  253 (297)
T ss_dssp             TTCCEEEEEECS-SSBEEEEEEESGGG
T ss_pred             CCceEEEEEECC-CCCceEEEEeCCCC
Confidence            988888887765 3457788886 554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.63  E-value=1.9e-07  Score=107.47  Aligned_cols=236  Identities=12%  Similarity=0.030  Sum_probs=130.4

Q ss_pred             EEEEeCCcEEEEeec-----cCCceeeeeeecceecCCCCeE--E-EEEcCCCcEEEEEecCCe-------------EEE
Q 005459          224 FVLYSNGQLMSCSVS-----KKGLKLAEFIKIDKELGSGDAV--C-ASIAPEQQILAVGTRRGV-------------VEL  282 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~-----d~~~~~~~~~~~~~~~~~~~~v--~-v~~sp~~~~la~g~~dg~-------------v~v  282 (696)
                      +.++|||+.++.+..     ..+++++|+.+++....+...+  . ++|+ |++.|+.++.+..             |++
T Consensus       134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~  212 (693)
T 3iuj_A          134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYF  212 (693)
T ss_dssp             EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEE
T ss_pred             EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEE
Confidence            357889987775443     2457788887766443332223  2 7899 9999999988854             999


Q ss_pred             EEccCCCceeeEEeeccCCCCCC-CCCCeEEEEECCCCCeEEEEEc----CCcEEEEEccCCe-eEEEeecccccceecc
Q 005459          283 YDLAESASLIRTVSLYDWGYSMD-DTGPVSCIAWTPDNSAFAVGWK----SRGLTVWSVSGCR-LMSTIRQISLSSISSP  356 (696)
Q Consensus       283 w~~~~~~~~~~~~~~~~~~~~~~-h~g~V~~l~~spdg~~lasg~~----Dg~v~vW~~~~~~-~~~~l~~~~~~~v~~~  356 (696)
                      |++.+....-..+...     .. |...+..+.|||||++|+....    ++.+.++++.++. ....+..+ ......+
T Consensus       213 ~~lgt~~~~~~~v~~~-----~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~-~~~~~~~  286 (693)
T 3iuj_A          213 HRLGTAQEDDRLVFGA-----IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD-LDADVSL  286 (693)
T ss_dssp             EETTSCGGGCEEEESC-----SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS-SSSCEEE
T ss_pred             EECCCCcccceEEEec-----CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC-CCceEEE
Confidence            9987632222222220     01 2345788999999998865443    2479999987652 23444433 2222222


Q ss_pred             cccCCCCCCccceecc------eeeEEEcCCCceE--EEEecCCcceEEEEec-ceeeeecc-CCCC--ceeeeeeecCC
Q 005459          357 IVKPNQDCKYEPLMSG------TSMMQWDEYGYRL--YAIEEGSSERVLIFSF-GKCCLNRG-VSGM--TYARQVIYGED  424 (696)
Q Consensus       357 ~~sp~~~~~~~~l~sg------~~~~~W~~~~~~l--~~~~~~~~~~v~~~~~-~~~~~s~~-~d~~--~~~w~~~~~~~  424 (696)
                       +++++.   ..++..      ..+..|++.+++.  +..+..|...+..+++ ++.++... .++.  +.+|++. +..
T Consensus       287 -~~~~g~---~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~~~d~~-g~~  361 (693)
T 3iuj_A          287 -VDNKGS---TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVEQFDYE-GKR  361 (693)
T ss_dssp             -EEEETT---EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEEEECTT-SCE
T ss_pred             -EeccCC---EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEEEEECC-CCe
Confidence             344441   222211      1566677665432  1122222222225555 44443332 3332  2333322 111


Q ss_pred             eEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCC----ccE-EEEccCCceEecCC
Q 005459          425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH----GLI-LYDIRQKKWRVFGD  490 (696)
Q Consensus       425 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~d----G~i-~w~~~sg~w~~f~~  490 (696)
                                    .+.+..|     ....+..+++++|++.++....+    +.+ .||+.+++.+.+..
T Consensus       362 --------------~~~l~~p-----~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~  413 (693)
T 3iuj_A          362 --------------VREVALP-----GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRA  413 (693)
T ss_dssp             --------------EEEECCS-----SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEEC
T ss_pred             --------------eEEeecC-----CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEe
Confidence                          1111112     23446777888999887776655    778 99998888776543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.57  E-value=3.2e-06  Score=97.25  Aligned_cols=149  Identities=12%  Similarity=0.102  Sum_probs=89.6

Q ss_pred             EEEEeCCcEEEEeecc----CCceeeeeeec----ceecCCCCeEEEEEcCCCcEEEEEe-cC---CeEEEEEccCCC-c
Q 005459          224 FVLYSNGQLMSCSVSK----KGLKLAEFIKI----DKELGSGDAVCASIAPEQQILAVGT-RR---GVVELYDLAESA-S  290 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d----~~~~~~~~~~~----~~~~~~~~~v~v~~sp~~~~la~g~-~d---g~v~vw~~~~~~-~  290 (696)
                      +.+++||+.++.....    ..+.+++...+    ..+..+.+...-.++++++.|+.-+ .|   +.|.++++++.. .
T Consensus       239 ~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~  318 (693)
T 3iuj_A          239 ATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA  318 (693)
T ss_dssp             EEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG
T ss_pred             EEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc
Confidence            4578999987665542    24556665443    2233445544433677666555444 33   678888887622 1


Q ss_pred             eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC---cEEEEEccCCeeEEEeecccccceecccccCCCCCCcc
Q 005459          291 LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR---GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE  367 (696)
Q Consensus       291 ~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg---~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~  367 (696)
                      ..+.+..        |...+.  .|+|+|+.|+....++   .|++|++.++. ...+...+...+..+.++|++.   .
T Consensus       319 ~~~~l~~--------~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~---~  384 (693)
T 3iuj_A          319 HWRDLIP--------ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDP---A  384 (693)
T ss_dssp             GCEEEEC--------CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCS---C
T ss_pred             ccEEEec--------CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCC---E
Confidence            2355555        666665  9999999998877655   58899988764 3444433244566777777662   2


Q ss_pred             ceec--c----eeeEEEcCCCceEE
Q 005459          368 PLMS--G----TSMMQWDEYGYRLY  386 (696)
Q Consensus       368 ~l~s--g----~~~~~W~~~~~~l~  386 (696)
                      .+.+  +    .++..|+..+++..
T Consensus       385 l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          385 LYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             EEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             EEEEecCCCCCCEEEEEECCCCeEE
Confidence            2221  1    26777777666543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.55  E-value=2.1e-06  Score=90.21  Aligned_cols=77  Identities=8%  Similarity=-0.038  Sum_probs=60.6

Q ss_pred             EEEcCCCcEEEEEec-C--------CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCe-EEEEE-cCCc
Q 005459          262 ASIAPEQQILAVGTR-R--------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA-FAVGW-KSRG  330 (696)
Q Consensus       262 v~~sp~~~~la~g~~-d--------g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~-lasg~-~Dg~  330 (696)
                      ++++||++.+.++.. +        +.+.++|+.+ .+.+.++..        . +....|+|+|||+. +++.. .+++
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~v--------g-~~p~gi~~s~Dg~~l~va~~~~~~~  338 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISN--------G-HDSDAIIAAQDGASDNYANSAGTEV  338 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEE--------E-EEECEEEECCSSSCEEEEEETTTTE
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEEC--------C-CCcceEEECCCCCEEEEEccCCCCe
Confidence            689999988877644 2        3566999988 777777765        2 25889999999984 55566 5899


Q ss_pred             EEEEEccCCeeEEEeecc
Q 005459          331 LTVWSVSGCRLMSTIRQI  348 (696)
Q Consensus       331 v~vW~~~~~~~~~~l~~~  348 (696)
                      |.++|+.+.+.+.+++.+
T Consensus       339 VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          339 LDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEEEESSSCEEEEECCCC
T ss_pred             EEEEECCCCcEEEEEECC
Confidence            999999999999888754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.55  E-value=1.4e-06  Score=91.00  Aligned_cols=117  Identities=9%  Similarity=0.030  Sum_probs=70.4

Q ss_pred             EeCCcEEEEeeccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCC----Cc-----eee--EE
Q 005459          227 YSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES----AS-----LIR--TV  295 (696)
Q Consensus       227 s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~----~~-----~~~--~~  295 (696)
                      ..+|+.+.....+++++.|.          ..+--++++||++.|.++..++. ++|.++..    ..     ...  ..
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~----------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~  243 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPH----------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIER  243 (343)
T ss_dssp             EETTEECBEECTTSCEECCC----------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEE
T ss_pred             eECCEEEEeccCCCceecee----------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEe
Confidence            45676665555565554443          11223999999999988887764 55555320    00     000  11


Q ss_pred             eeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459          296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       296 ~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      .+        +.+....|++++||+.+++.+.++.|.+||..+++..............+++|.+++
T Consensus       244 ~g--------~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g  302 (343)
T 2qe8_A          244 YS--------EKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG  302 (343)
T ss_dssp             EE--------ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS
T ss_pred             cc--------cCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC
Confidence            12        445567799999999999999999999999944543222221112335556665554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.54  E-value=1.3e-05  Score=85.96  Aligned_cols=243  Identities=13%  Similarity=0.025  Sum_probs=135.9

Q ss_pred             CeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC--cEEEEE
Q 005459          258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR--GLTVWS  335 (696)
Q Consensus       258 ~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg--~v~vW~  335 (696)
                      .+..++|+|+++++++...++.|++||.+. +... ++..        ...... ++|+|+|+.|+++..++  .|.+++
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~-g~~~-~~~~--------~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d  200 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDD-NKVT-TVHP--------GFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYM  200 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTT-TEEE-EEEE--------TCCBCB-CEECTTSSEEEEEBSSTTCEEEEEE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCC-CEEE-Eeec--------cCCCCc-eeEecCCCcEEEEecCCCceEEEEE
Confidence            455699999999999988889999999875 4433 3333        112223 99999999999988866  788888


Q ss_pred             ccCCeeEEEe---ecccccceecccccC-CCCCCccceecce--eeEEEcCCCceEEEE----ecCCc--c-e-EEEEec
Q 005459          336 VSGCRLMSTI---RQISLSSISSPIVKP-NQDCKYEPLMSGT--SMMQWDEYGYRLYAI----EEGSS--E-R-VLIFSF  401 (696)
Q Consensus       336 ~~~~~~~~~l---~~~~~~~v~~~~~sp-~~~~~~~~l~sg~--~~~~W~~~~~~l~~~----~~~~~--~-~-v~~~~~  401 (696)
                      ..++.....+   ..+......+++++| ++    ..+++..  .+..|+++++.....    ..++.  . . =+++++
T Consensus       201 ~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g----~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p  276 (409)
T 3hrp_A          201 KASGWAPTRIGQLGSTFSGKIGAVALDETEE----WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF  276 (409)
T ss_dssp             GGGTTCEEEEEECCTTSCSCCCBCEECTTSS----EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET
T ss_pred             cCCCceeEEeeeccchhcCCcEEEEEeCCCC----eEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC
Confidence            8766543344   121234577889998 44    4444222  677888876654333    11111  1 1 244555


Q ss_pred             --ceeeeeccCCCCceeeeeeecCCeEEEEecCC-CCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEe-CCccE-
Q 005459          402 --GKCCLNRGVSGMTYARQVIYGEDRLLVVQSED-TDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-LHGLI-  476 (696)
Q Consensus       402 --~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag-~dG~i-  476 (696)
                        +...++-...+.++.++.. +.  +....+.. ...  +...  +... ..-.....++++|+|+++++-. .++.| 
T Consensus       277 ~~g~lyv~d~~~~~I~~~~~~-g~--~~~~~g~~~~~g--~~dg--~~~~-~~~~~P~gia~d~dG~lyvad~~~~~~I~  348 (409)
T 3hrp_A          277 VDSNFYMSDQNLSSVYKITPD-GE--CEWFCGSATQKT--VQDG--LREE-ALFAQPNGMTVDEDGNFYIVDGFKGYCLR  348 (409)
T ss_dssp             TTTEEEEEETTTTEEEEECTT-CC--EEEEEECTTCCS--CBCE--EGGG-CBCSSEEEEEECTTCCEEEEETTTTCEEE
T ss_pred             CCCEEEEEeCCCCEEEEEecC-CC--EEEEEeCCCCCC--cCCC--cccc-cEeCCCeEEEEeCCCCEEEEeCCCCCEEE
Confidence              3333443444444444321 11  11111111 000  0000  0000 0012357899999999777777 78888 


Q ss_pred             EEEccCCceEecCCc-c---------ceeeeE-EEeEeeeC-cEEEEEEeecCCCeEEEEEee
Q 005459          477 LYDIRQKKWRVFGDI-T---------QEQKIQ-SKGLLWLG-KIIVVCNYIDSSNTYELLFYP  527 (696)
Q Consensus       477 ~w~~~sg~w~~f~~~-~---------~e~~~~-v~~~~w~~-~~lv~~~~~~~~~~~~lr~y~  527 (696)
                      .|+..+++...+... .         .+..+. ..+++... ..|.++  .  ...+.||-++
T Consensus       349 ~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa--d--~~n~~Ir~i~  407 (409)
T 3hrp_A          349 KLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA--E--AWGKAIRKYA  407 (409)
T ss_dssp             EEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE--E--STTCEEEEEE
T ss_pred             EEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE--E--CCCCeEEEEE
Confidence            999878876544221 0         011122 55777765 455554  1  2335666554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.53  E-value=1e-05  Score=82.41  Aligned_cols=215  Identities=9%  Similarity=-0.015  Sum_probs=110.3

Q ss_pred             EEe-CCcEEEEeeccCCceeeeeeecce--ecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC
Q 005459          226 LYS-NGQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY  302 (696)
Q Consensus       226 ~s~-dG~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~  302 (696)
                      +.+ +++++++....+.+..|+....+.  +.....+.+++++|++++++. . ++.|.+||.++ ++.. .+...... 
T Consensus        20 w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~-g~~~-~~~~~~~~-   94 (297)
T 3g4e_A           20 WEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE-QSAV-VLATVDND-   94 (297)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT-TEEE-EEEECCTT-
T ss_pred             EECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCC-CcEE-EEEecCCC-
Confidence            455 455666555666677777544322  111223344999999996655 3 67899999876 4432 23221000 


Q ss_pred             CCCCCCCeEEEEECCCCCeEEEEEcC---------CcEEEEEccC-CeeEEEeecccccceecccccCCCCCCccce-ec
Q 005459          303 SMDDTGPVSCIAWTPDNSAFAVGWKS---------RGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MS  371 (696)
Q Consensus       303 ~~~h~g~V~~l~~spdg~~lasg~~D---------g~v~vW~~~~-~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l-~s  371 (696)
                        .....+++++++|||+.+++...+         ..-++|.+.. ++......+  ....+.++|+|++    +.+ ++
T Consensus        95 --~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~--~~~pngi~~spdg----~~lyv~  166 (297)
T 3g4e_A           95 --KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ--VDISNGLDWSLDH----KIFYYI  166 (297)
T ss_dssp             --CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE--ESBEEEEEECTTS----CEEEEE
T ss_pred             --CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec--cccccceEEcCCC----CEEEEe
Confidence              012458899999999977765432         2345665542 332222222  2345778899987    533 32


Q ss_pred             ce---eeEEEcC--CCceE-----EEEecCCcceE--EEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCccee
Q 005459          372 GT---SMMQWDE--YGYRL-----YAIEEGSSERV--LIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI  439 (696)
Q Consensus       372 g~---~~~~W~~--~~~~l-----~~~~~~~~~~v--~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w  439 (696)
                      ..   .+..|+.  .++.+     +.....+....  ++++         .++  ++|....+..++..+.....  .. 
T Consensus       167 ~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d---------~~G--~lwva~~~~~~v~~~d~~tG--~~-  232 (297)
T 3g4e_A          167 DSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID---------AEG--KLWVACYNGGRVIRLDPVTG--KR-  232 (297)
T ss_dssp             EGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB---------TTS--CEEEEEETTTEEEEECTTTC--CE-
T ss_pred             cCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC---------CCC--CEEEEEcCCCEEEEEcCCCc--eE-
Confidence            22   5666654  44433     11111111111  2222         222  33444444444443332100  01 


Q ss_pred             EEeecCeeeecCCCceEEEEEc-CCCCEEEEEeC
Q 005459          440 LHLNLPVSYISQNWPVQHVAAS-KDGMFLAVAGL  472 (696)
Q Consensus       440 ~~~~~~~~~~~~~~~I~~va~s-~dG~~la~ag~  472 (696)
                           ...+..+...+.+++|+ ||++.|.+++.
T Consensus       233 -----~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          233 -----LQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             -----EEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             -----EEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence                 11222333468999998 89987766654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.52  E-value=6.3e-06  Score=88.27  Aligned_cols=150  Identities=11%  Similarity=0.057  Sum_probs=91.8

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEecCC--eEEEEEccCCCceeeEEeec
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLY  298 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~~dg--~v~vw~~~~~~~~~~~~~~~  298 (696)
                      +++.++|+++++...+..++.++....+..   ....... ++|+|+++.|.++..++  .|.+++... ......+...
T Consensus       136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~-~~~~~~~g~~  213 (409)
T 3hrp_A          136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS-GWAPTRIGQL  213 (409)
T ss_dssp             EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG-TTCEEEEEEC
T ss_pred             EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCC-CceeEEeeec
Confidence            457788888887777777888876543221   1212223 89999999999888866  788888765 3333333110


Q ss_pred             cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEE----eecccccce--ecccccCCCCCCccceecc
Q 005459          299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST----IRQISLSSI--SSPIVKPNQDCKYEPLMSG  372 (696)
Q Consensus       299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~----l~~~~~~~v--~~~~~sp~~~~~~~~l~sg  372 (696)
                          ...+...+.+++++|++..|..+..++.|..|+..++.....    ..+. ...-  +.++|+|++.   ..+++.
T Consensus       214 ----~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~-~~~~P~~~ia~~p~~g---~lyv~d  285 (409)
T 3hrp_A          214 ----GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS-LGTNPGPYLIYYFVDS---NFYMSD  285 (409)
T ss_dssp             ----CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC-CCCSSCCEEEEETTTT---EEEEEE
T ss_pred             ----cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC-CCCCccccEEEeCCCC---EEEEEe
Confidence                001335578899999544455577788999999987653221    1111 1111  2788888531   444433


Q ss_pred             e---eeEEEcCCCc
Q 005459          373 T---SMMQWDEYGY  383 (696)
Q Consensus       373 ~---~~~~W~~~~~  383 (696)
                      .   .+..|+.++.
T Consensus       286 ~~~~~I~~~~~~g~  299 (409)
T 3hrp_A          286 QNLSSVYKITPDGE  299 (409)
T ss_dssp             TTTTEEEEECTTCC
T ss_pred             CCCCEEEEEecCCC
Confidence            2   6777887665

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.48  E-value=8.6e-06  Score=84.31  Aligned_cols=94  Identities=7%  Similarity=0.077  Sum_probs=64.1

Q ss_pred             EEEEcCCCcEEEEE-ecCCeEEEEEcc--CCC-ce--eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459          261 CASIAPEQQILAVG-TRRGVVELYDLA--ESA-SL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW  334 (696)
Q Consensus       261 ~v~~sp~~~~la~g-~~dg~v~vw~~~--~~~-~~--~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW  334 (696)
                      .++|+||++.|.++ +.++.|.+|+++  + + ..  .+.+....     ...+....++++++|+..++.+.+++|.+|
T Consensus       183 ~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~-Gl~~~~~~~~~~~~-----~~~~~p~gi~~d~~G~lwva~~~~~~v~~~  256 (326)
T 2ghs_A          183 SICFSPDGTTGYFVDTKVNRLMRVPLDART-GLPTGKAEVFIDST-----GIKGGMDGSVCDAEGHIWNARWGEGAVDRY  256 (326)
T ss_dssp             EEEECTTSCEEEEEETTTCEEEEEEBCTTT-CCBSSCCEEEEECT-----TSSSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred             CeEEcCCCCEEEEEECCCCEEEEEEccccc-CCcccCceEEEECC-----CCCCCCCeeEECCCCCEEEEEeCCCEEEEE
Confidence            48999999876554 557899999986  3 3 22  12222100     134567889999999988888888899999


Q ss_pred             EccCCeeEEEeecccccceeccccc-CCC
Q 005459          335 SVSGCRLMSTIRQISLSSISSPIVK-PNQ  362 (696)
Q Consensus       335 ~~~~~~~~~~l~~~~~~~v~~~~~s-p~~  362 (696)
                      +.. ++.+..+..+ ...+++++|+ |++
T Consensus       257 d~~-g~~~~~i~~~-~~~~~~~af~g~d~  283 (326)
T 2ghs_A          257 DTD-GNHIARYEVP-GKQTTCPAFIGPDA  283 (326)
T ss_dssp             CTT-CCEEEEEECS-CSBEEEEEEESTTS
T ss_pred             CCC-CCEEEEEECC-CCCcEEEEEecCCC
Confidence            984 5556666544 3346777776 554

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.46  E-value=0.00026  Score=75.55  Aligned_cols=269  Identities=10%  Similarity=0.019  Sum_probs=155.7

Q ss_pred             CCCcEEEEEecC-----CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE----------cCCc
Q 005459          266 PEQQILAVGTRR-----GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW----------KSRG  330 (696)
Q Consensus       266 p~~~~la~g~~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~----------~Dg~  330 (696)
                      |+++.+.+....     ++|.++|..+ .+.+.++..        -..+  .+++||||+.|.++.          .++.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t-~~vv~~I~v--------G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~  150 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGST-GRILGMTDG--------GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDY  150 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTT-TEEEEEEEE--------CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCC-CEEEEEEEC--------CCCC--ceEECCCCCEEEEEeccccccccCCCCCE
Confidence            455555554442     6999999988 788888876        3445  799999999998876          4678


Q ss_pred             EEEEEccCCeeEEEeeccc------ccceecccccCCCCCCccceecc-----eeeEEEcCCCceEEEEecCCcceEEEE
Q 005459          331 LTVWSVSGCRLMSTIRQIS------LSSISSPIVKPNQDCKYEPLMSG-----TSMMQWDEYGYRLYAIEEGSSERVLIF  399 (696)
Q Consensus       331 v~vW~~~~~~~~~~l~~~~------~~~v~~~~~sp~~~~~~~~l~sg-----~~~~~W~~~~~~l~~~~~~~~~~v~~~  399 (696)
                      |.++|..+.+.+.++.-.+      ...-..++|+|++    +.+..+     .++.+.|..+.+++....-.. . ..+
T Consensus       151 VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDG----k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-~-~~~  224 (426)
T 3c75_H          151 VEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDN----KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-C-YHI  224 (426)
T ss_dssp             EEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTS----SEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E-EEE
T ss_pred             EEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCC----CEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-c-eee
Confidence            9999999999888875210      1224567899998    444321     256677888777766553211 1 112


Q ss_pred             ec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCce-EEEEEcCCCCEEEEEeCCccE
Q 005459          400 SF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV-QHVAASKDGMFLAVAGLHGLI  476 (696)
Q Consensus       400 ~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I-~~va~s~dG~~la~ag~dG~i  476 (696)
                      .+  .+..++.+.|+.+..-+. .. .++.           +.. .  ..+.-...|+ ..++++++|+.++.....|.+
T Consensus       225 ~p~g~~~~v~~~~dG~~~~V~~-~~-~~v~-----------~~~-~--~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V  288 (426)
T 3c75_H          225 FPASPTVFYMNCRDGSLARVDF-AD-GETK-----------VTN-T--EVFHTEDELLINHPAFSLRSGRLVWPTYTGKI  288 (426)
T ss_dssp             EEEETTEEEEEETTSSEEEEEC-CT-TCCE-----------EEE-C--CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEE
T ss_pred             ccCCCcEEEEEcCCCCEEEEEC-CC-CcEE-----------EEe-e--eeeccCCCceeeEeeecCCCCEEEEEeCCCcE
Confidence            22  233345555665544443 11 1110           000 0  0111111222 135789999988888888988


Q ss_pred             -EEEccCCc------eEecCCccceeeeEEEe---Eeee--CcEEEEEEeecC-----CCeEEEEEeeCCCCCccceeEE
Q 005459          477 -LYDIRQKK------WRVFGDITQEQKIQSKG---LLWL--GKIIVVCNYIDS-----SNTYELLFYPRYHLDQSSLLCR  539 (696)
Q Consensus       477 -~w~~~sg~------w~~f~~~~~e~~~~v~~---~~w~--~~~lv~~~~~~~-----~~~~~lr~y~~~~l~~~~~~~~  539 (696)
                       +.|..++.      |++......+..+...+   +...  ++.+.++.....     ....+|.+++...+   .++.+
T Consensus       289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~---kvv~~  365 (426)
T 3c75_H          289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG---ERINK  365 (426)
T ss_dssp             EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC---CEEEE
T ss_pred             EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC---eEEEE
Confidence             99987654      33221111122222222   4554  455666533211     12568999987632   23344


Q ss_pred             eecCCc--cEEEEccCC-EEEEEE-cCceEEEEEE
Q 005459          540 KSLLAK--PIVMDVYED-YILVTY-RPFDVHIFHV  570 (696)
Q Consensus       540 ~~~~~~--~l~~~~~~~-~llv~~-~d~~~~l~~~  570 (696)
                      .++...  -+.++++++ .++++. .++++.+++.
T Consensus       366 I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~  400 (426)
T 3c75_H          366 IELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDA  400 (426)
T ss_dssp             EEEEEEECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred             EECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEEC
Confidence            333322  367778888 777766 4788888874

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.44  E-value=2.8e-05  Score=80.43  Aligned_cols=219  Identities=11%  Similarity=-0.021  Sum_probs=111.5

Q ss_pred             EEEEeC-CcEEEEeeccCCceeeeeeecce--ecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459          224 FVLYSN-GQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW  300 (696)
Q Consensus       224 ~~~s~d-G~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~  300 (696)
                      ..++++ ++++++...++.+..|+...++.  +.......+++++|+++++++. .+ .|.+||.++ ++.. .+.....
T Consensus        54 p~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~-g~~~-~~~~~~~  129 (326)
T 2ghs_A           54 PTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTAT-GVLT-LHAELES  129 (326)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTT-CCEE-EEECSST
T ss_pred             CeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCC-CcEE-EEeeCCC
Confidence            345665 44555555566677776544321  1111234448999999987754 44 488999876 4432 2322100


Q ss_pred             CCCCCCCCCeEEEEECCCCCeEEEEEcC----CcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce-ecc---
Q 005459          301 GYSMDDTGPVSCIAWTPDNSAFAVGWKS----RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSG---  372 (696)
Q Consensus       301 ~~~~~h~g~V~~l~~spdg~~lasg~~D----g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l-~sg---  372 (696)
                         ......+.+++++|||+.+++...+    +...||.+.+++.. .+... ....+.++|+|++    +.+ ++.   
T Consensus       130 ---~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~-~~~~~-~~~~~~i~~s~dg----~~lyv~~~~~  200 (326)
T 2ghs_A          130 ---DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT-KLFAD-ISIPNSICFSPDG----TTGYFVDTKV  200 (326)
T ss_dssp             ---TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE-EEEEE-ESSEEEEEECTTS----CEEEEEETTT
T ss_pred             ---CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEE-EeeCC-CcccCCeEEcCCC----CEEEEEECCC
Confidence               0012468999999999977765432    22344444344433 22221 2345678899987    533 222   


Q ss_pred             eeeEEEcCC--Cc-e-----EEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeec
Q 005459          373 TSMMQWDEY--GY-R-----LYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL  444 (696)
Q Consensus       373 ~~~~~W~~~--~~-~-----l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~  444 (696)
                      ..+..|+.+  ++ +     .+............       +....++  .+|....+..++..+....   ..      
T Consensus       201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~g-------i~~d~~G--~lwva~~~~~~v~~~d~~g---~~------  262 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG-------SVCDAEG--HIWNARWGEGAVDRYDTDG---NH------  262 (326)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE-------EEECTTS--CEEEEEETTTEEEEECTTC---CE------
T ss_pred             CEEEEEEcccccCCcccCceEEEECCCCCCCCCe-------eEECCCC--CEEEEEeCCCEEEEECCCC---CE------
Confidence            156667754  33 2     22222111111111       1112222  3454444444554443210   11      


Q ss_pred             CeeeecCCCceEEEEEc-CCCCEEEEEeCC
Q 005459          445 PVSYISQNWPVQHVAAS-KDGMFLAVAGLH  473 (696)
Q Consensus       445 ~~~~~~~~~~I~~va~s-~dG~~la~ag~d  473 (696)
                      ...+..+...+.+++|+ ||++.|.+++.+
T Consensus       263 ~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          263 IARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence            11222234458999998 999877666543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.37  E-value=3.2e-05  Score=79.03  Aligned_cols=67  Identities=10%  Similarity=-0.035  Sum_probs=52.8

Q ss_pred             EEEEcCCCc-EEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459          261 CASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       261 ~v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~  338 (696)
                      ..+|+|+++ ++.++..++.|..|+.+  ++ ...+..        +.+.+..++++|||+.+++...++.|.+|+..+
T Consensus        49 gp~~~~~g~~l~~~d~~~~~i~~~~~~--g~-~~~~~~--------~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g  116 (305)
T 3dr2_A           49 GPAWWEAQRTLVWSDLVGRRVLGWRED--GT-VDVLLD--------ATAFTNGNAVDAQQRLVHCEHGRRAITRSDADG  116 (305)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEETT--SC-EEEEEE--------SCSCEEEEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEeCC--CC-EEEEeC--------CCCccceeeECCCCCEEEEECCCCEEEEECCCC
Confidence            388999998 77888889999999873  33 344555        567799999999999777666668999999864

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.36  E-value=5.5e-05  Score=78.76  Aligned_cols=123  Identities=12%  Similarity=0.008  Sum_probs=79.9

Q ss_pred             EEEEEeCCcEEEEeec--cCCceeeeeeeccee---------cCCCCeEE-EEEcCCCcEEEEEec-----CCeEEEEEc
Q 005459          223 LFVLYSNGQLMSCSVS--KKGLKLAEFIKIDKE---------LGSGDAVC-ASIAPEQQILAVGTR-----RGVVELYDL  285 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~--d~~~~~~~~~~~~~~---------~~~~~~v~-v~~sp~~~~la~g~~-----dg~v~vw~~  285 (696)
                      -+++++||+++++...  ++..++|....++..         .++...+. +++++++++.++-..     ++.|.+||.
T Consensus        21 ~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~  100 (343)
T 2qe8_A           21 NITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDT  100 (343)
T ss_dssp             EEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEET
T ss_pred             eEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEEC
Confidence            3567889998887532  232455554333221         12333444 999999998887654     689999999


Q ss_pred             cCCCceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEE---cCCcEEEEEccCCeeEEEeecc
Q 005459          286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGW---KSRGLTVWSVSGCRLMSTIRQI  348 (696)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~---~Dg~v~vW~~~~~~~~~~l~~~  348 (696)
                      ++ ++.++++......  ..+...+..++++|+ |..+++-.   .+++|.+||+.+++....+.+|
T Consensus       101 ~t-g~~~~~~~~~~~~--~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~  164 (343)
T 2qe8_A          101 LN-NQLSRVIYLPPPI--TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGY  164 (343)
T ss_dssp             TT-TEEEEEEECCTTT--SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTC
T ss_pred             CC-CeEEEEEECChhh--cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCC
Confidence            87 6666666541110  113345789999986 45556655   6799999999988776666543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.29  E-value=0.00018  Score=73.31  Aligned_cols=104  Identities=14%  Similarity=0.156  Sum_probs=61.0

Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeecce--e----cC-CCCeEE-EEEcCCCcEEEE----Eec-------------CCe
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK--E----LG-SGDAVC-ASIAPEQQILAV----GTR-------------RGV  279 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~--~----~~-~~~~v~-v~~sp~~~~la~----g~~-------------dg~  279 (696)
                      ++.+||+++++...+..+..++.. ++.  +    .+ ...... ++++|+|++.++    |..             .+.
T Consensus        92 ~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~  170 (305)
T 3dr2_A           92 AVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHS  170 (305)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEE
T ss_pred             eECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCe
Confidence            356677766654444445555432 111  1    01 011223 889999999887    432             245


Q ss_pred             EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC------CcEEEEEccCCe
Q 005459          280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS------RGLTVWSVSGCR  340 (696)
Q Consensus       280 v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D------g~v~vW~~~~~~  340 (696)
                      |..|+.++ ++..... .         ......++|+|||+.|..+..+      +.|.+|++.+..
T Consensus       171 v~~~d~~~-g~~~~~~-~---------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~  226 (305)
T 3dr2_A          171 VYRLPPDG-SPLQRMA-D---------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA  226 (305)
T ss_dssp             EEEECSSS-CCCEEEE-E---------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred             EEEEcCCC-CcEEEEe-c---------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence            55565544 3333222 2         1245789999999988877665      689999987654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.24  E-value=7.7e-07  Score=94.07  Aligned_cols=178  Identities=14%  Similarity=0.015  Sum_probs=93.7

Q ss_pred             CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459          267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR  346 (696)
Q Consensus       267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~  346 (696)
                      ++..+++|+.||.|+.||..+ ++.+-++..          +++.+..+.++|..+++++.|+.+..||..+++.+..+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~t-G~~~W~~~~----------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~   76 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRT-GSIKWTLKE----------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP   76 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTT-CCEEEEEEC----------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS
T ss_pred             eCCEEEEEcCCCEEEEEECCC-CCEEEEecC----------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence            578899999999999999988 666554443          234444556788888888899999999998887766654


Q ss_pred             ccccccee-cccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeee
Q 005459          347 QISLSSIS-SPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIY  421 (696)
Q Consensus       347 ~~~~~~v~-~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~  421 (696)
                      .+....+. ++.+..+     ..+..|.   .+..||+++++++.....+.  ...+.+ ++.++.++.|+.+..||..+
T Consensus        77 ~~~~~~~~~sp~~~~~-----~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~--~~~~~p~~~~v~~~~~dg~v~a~d~~t  149 (369)
T 2hz6_A           77 FTIPELVQASPCRSSD-----GILYMGKKQDIWYVIDLLTGEKQQTLSSAF--ADSLSPSTSLLYLGRTEYTITMYDTKT  149 (369)
T ss_dssp             CCHHHHHTTCSCC----------CCCCEEEEEEEEECCC------------------------EEEEEEEEEEECCCSSS
T ss_pred             ccCccccccCceEecC-----CEEEEEeCCCEEEEEECCCCcEEEEecCCC--cccccccCCEEEEEecCCEEEEEECCC
Confidence            33111111 1222112     3344444   78899999888766554432  122333 56677777888888888766


Q ss_pred             cCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC---CEEEEEeCCccE-EEEccCCc
Q 005459          422 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG---MFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       422 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG---~~la~ag~dG~i-~w~~~sg~  484 (696)
                      ++.             .|..-     +...    ...++++++   ..+.+++.+|.+ .||..+|+
T Consensus       150 G~~-------------~W~~~-----~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          150 REL-------------RWNAT-----YFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             SSC-------------CCEEE-----EEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred             CCE-------------EEeEe-----cccc----cCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence            654             23211     0011    122344432   456778889999 99999886

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.14  E-value=0.00059  Score=71.62  Aligned_cols=251  Identities=10%  Similarity=0.025  Sum_probs=128.8

Q ss_pred             CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459          267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR  346 (696)
Q Consensus       267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~  346 (696)
                      ++..+.+++.+|.|..+|.++ ++.+-.......    ....++.      ++..+.++..++.+..+|..+++.+....
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~----~~~~p~~------~~~~v~v~~~~g~l~~~d~~tG~~~W~~~  170 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSD-GTVAWQTKVAGE----ALSRPVV------SDGLVLIHTSNGQLQALNEADGAVKWTVN  170 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTT-CCEEEEEECSSC----CCSCCEE------ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCC-CCEEEEEeCCCc----eEcCCEE------ECCEEEEEcCCCeEEEEECCCCcEEEEEe
Confidence            456778889999999999987 665544443110    0111221      24477778889999999999888877765


Q ss_pred             cccccc----eecccccCCCCCCccceecc--eeeEEEcCCCceEEEEecCCcc-------eE--EEEec---ceeeeec
Q 005459          347 QISLSS----ISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEGSSE-------RV--LIFSF---GKCCLNR  408 (696)
Q Consensus       347 ~~~~~~----v~~~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~~~~~~~~-------~v--~~~~~---~~~~~s~  408 (696)
                      ......    ...+... ++    ..++..  ..+..+++.+++.+........       ++  ....+   ...+..+
T Consensus       171 ~~~~~~~~~~~~~~~~~-~~----~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~  245 (376)
T 3q7m_A          171 LDMPSLSLRGESAPTTA-FG----AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFAL  245 (376)
T ss_dssp             CCC-----CCCCCCEEE-TT----EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEE
T ss_pred             CCCCceeecCCCCcEEE-CC----EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEE
Confidence            431110    0112221 11    222221  1577778776665443321110       00  00001   2334444


Q ss_pred             cCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc--e
Q 005459          409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--W  485 (696)
Q Consensus       409 ~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~--w  485 (696)
                      +.++.+..++..+++             ..|..-         .......+.  ++..+.+++.+|.+ .+|..+|+  |
T Consensus       246 ~~~g~l~~~d~~tG~-------------~~w~~~---------~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w  301 (376)
T 3q7m_A          246 AYNGNLTALDLRSGQ-------------IMWKRE---------LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLW  301 (376)
T ss_dssp             CTTSCEEEEETTTCC-------------EEEEEC---------CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEE
T ss_pred             ecCcEEEEEECCCCc-------------EEeecc---------CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEE
Confidence            445555444433332             234321         111223333  46677788888888 99999987  5


Q ss_pred             EecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEE--EEccCCEEEEEEcCc
Q 005459          486 RVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIV--MDVYEDYILVTYRPF  563 (696)
Q Consensus       486 ~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~llv~~~d~  563 (696)
                      +.-.  ....  ........++.++++     +.+..|..++..   ....+.+.++....+.  ....++.|++++.++
T Consensus       302 ~~~~--~~~~--~~~~~~~~~~~l~v~-----~~~g~l~~~d~~---tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G  369 (376)
T 3q7m_A          302 TQSD--LLHR--LLTSPVLYNGNLVVG-----DSEGYLHWINVE---DGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDG  369 (376)
T ss_dssp             EECT--TTTS--CCCCCEEETTEEEEE-----CTTSEEEEEETT---TCCEEEEEECCTTCBCSCCEEETTEEEEEBTTS
T ss_pred             eecc--cCCC--cccCCEEECCEEEEE-----eCCCeEEEEECC---CCcEEEEEecCCCcceeCCEEECCEEEEEeCCC
Confidence            4310  0111  112233356666665     334578888764   1223333334211111  112467888888888


Q ss_pred             eEEEEE
Q 005459          564 DVHIFH  569 (696)
Q Consensus       564 ~~~l~~  569 (696)
                      .+..|+
T Consensus       370 ~l~~~~  375 (376)
T 3q7m_A          370 TVYSIT  375 (376)
T ss_dssp             CEEEEE
T ss_pred             EEEEEe
Confidence            877664

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.13  E-value=0.029  Score=65.23  Aligned_cols=209  Identities=11%  Similarity=0.136  Sum_probs=109.2

Q ss_pred             CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC-CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459          258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS-MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS  335 (696)
Q Consensus       258 ~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~  335 (696)
                      ..|. +...++|++- +|+.++-|..|+..+ ... ..+........ .-....|.++...++|+.|-.|..++++.+++
T Consensus       357 ~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~-~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d  433 (795)
T 4a2l_A          357 NVVSCIVEDKDKNLW-IGTNDGGLNLYNPIT-QRF-TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH  433 (795)
T ss_dssp             SSEEEEEECTTSCEE-EEESSSCEEEECTTT-CCE-EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             CeeEEEEECCCCCEE-EEECCCCeEEEcCCC-CcE-EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence            3354 7778888755 477777788888765 332 22221000000 00245799999999998667788888999999


Q ss_pred             ccCCeeEEEeec----ccccceecccccCCCCCCccceecce-eeEEEcCCCceEEEEecC------CcceEEEEeccee
Q 005459          336 VSGCRLMSTIRQ----ISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEG------SSERVLIFSFGKC  404 (696)
Q Consensus       336 ~~~~~~~~~l~~----~~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~~------~~~~v~~~~~~~~  404 (696)
                      ..+++... +..    .....|.++..++++    ..+++.. -+..+++++++.......      ....|..+..   
T Consensus       434 ~~~~~~~~-~~~~~~~l~~~~v~~i~~d~~g----~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~---  505 (795)
T 4a2l_A          434 RNSGQVEN-FNQRNSQLVNENVYAILPDGEG----NLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFR---  505 (795)
T ss_dssp             TTTCCEEE-ECTTTSCCSCSCEEEEEECSSS----CEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEE---
T ss_pred             CCCCcEEE-eecCCCCcCCCeeEEEEECCCC----CEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEE---
Confidence            88775432 221    112346666666655    5554322 455666666544332211      0122322211   


Q ss_pred             eeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeec-CeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCC
Q 005459          405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL-PVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQK  483 (696)
Q Consensus       405 ~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg  483 (696)
                            |..-++|.-..  ..++.+.....   .+ .... +..-...+..|.++..+++|+..+. +..|+..||..++
T Consensus       506 ------d~~g~lWigt~--~Gl~~~~~~~~---~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~Gl~~~d~~~~  572 (795)
T 4a2l_A          506 ------DSHKRLWIGGE--EGLSVFKQEGL---DI-QKASILPVSNVTKLFTNCIYEASNGIIWVG-TREGFYCFNEKDK  572 (795)
T ss_dssp             ------CTTCCEEEEES--SCEEEEEEETT---EE-EECCCSCSCGGGGSCEEEEEECTTSCEEEE-ESSCEEEEETTTT
T ss_pred             ------CCCCCEEEEeC--CceEEEeCCCC---eE-EEecCCCCCCCCCCeeEEEEECCCCCEEEE-eCCCceeECCCCC
Confidence                  11112232211  11222211100   01 0000 0000113346999999999995544 4458779999999


Q ss_pred             ceEecCC
Q 005459          484 KWRVFGD  490 (696)
Q Consensus       484 ~w~~f~~  490 (696)
                      +++.|..
T Consensus       573 ~~~~~~~  579 (795)
T 4a2l_A          573 QIKRYNT  579 (795)
T ss_dssp             EEEEECG
T ss_pred             cEEEeCC
Confidence            8887753

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.13  E-value=0.012  Score=68.57  Aligned_cols=376  Identities=12%  Similarity=0.080  Sum_probs=183.8

Q ss_pred             EEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecCh---HHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecC
Q 005459           24 IIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDS---ESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE  100 (696)
Q Consensus        24 ~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~---~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~  100 (696)
                      .+...++|.+.+....+.|.+|+.. ... +..+....   .++ ....+.++...++|.+ -++|.+| |.+|+.....
T Consensus       219 ~i~~d~~g~lwigt~~~Gl~~~~~~-~~~-~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~l-Wigt~~G-l~~~~~~~~~  293 (795)
T 4a2l_A          219 AILQQSPTRIWVATEGAGLFLINPK-TKE-IKNYLHSPSNPKSI-SSNYIRSLAMDSQNRL-WIGTFND-LNIYHEGTDS  293 (795)
T ss_dssp             EEEEEETTEEEEEEBSSCEEEEETT-TTE-EEEECCCTTCTTSC-SCSBEEEEEECTTSCE-EEEESSC-EEEEETTTTE
T ss_pred             EEEEcCCCCEEEEECCCCeEEEeCC-CCe-EEEeecCCCCcccc-CCCeEEEEEEcCCCCE-EEEeCCh-hheEcCCCCe
Confidence            3556778887766556679999975 322 22232211   111 1245678888888874 4556665 7777653221


Q ss_pred             cccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCC-CeEEEEecCCcEEEEecCCccccceeeccCCCCCccc
Q 005459          101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA  179 (696)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~-~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~  179 (696)
                      -..+......+                .......|.++..|. ..|.+|+.++-|..++-....-....           
T Consensus       294 ~~~~~~~~~~~----------------~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~-----------  346 (795)
T 4a2l_A          294 FASYSSNPVEN----------------GSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIR-----------  346 (795)
T ss_dssp             EEEECCCTTST----------------TSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEEC-----------
T ss_pred             EEEEecCCCCC----------------CCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEc-----------
Confidence            11110000000                011123566766665 57889998777766542211111000           


Q ss_pred             ccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce--ec---
Q 005459          180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--EL---  254 (696)
Q Consensus       180 ~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~--~~---  254 (696)
                       ..+.  .+              .  -....|.++..          .++|++.+ +..++.+..++....+.  ..   
T Consensus       347 -~~~~--~~--------------~--l~~~~V~~i~~----------d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~  396 (795)
T 4a2l_A          347 -NIPY--KN--------------S--LSDNVVSCIVE----------DKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQE  396 (795)
T ss_dssp             -CCTT--SS--------------S--CSCSSEEEEEE----------CTTSCEEE-EESSSCEEEECTTTCCEEEECCC-
T ss_pred             -CCCC--CC--------------C--CCCCeeEEEEE----------CCCCCEEE-EECCCCeEEEcCCCCcEEEEecCC
Confidence             0000  00              0  01223655543          33444433 22222333333221110  00   


Q ss_pred             -----C-CCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459          255 -----G-SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK  327 (696)
Q Consensus       255 -----~-~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~  327 (696)
                           + ....+. +...+++++|-+|+.++-+..|+.++ ++ ...+.....   .-+...|.++...++|+..+.. .
T Consensus       397 ~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~-~~-~~~~~~~~~---~l~~~~v~~i~~d~~g~lwigt-~  470 (795)
T 4a2l_A          397 DESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS-GQ-VENFNQRNS---QLVNENVYAILPDGEGNLWLGT-L  470 (795)
T ss_dssp             -----CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT-CC-EEEECTTTS---CCSCSCEEEEEECSSSCEEEEE-S
T ss_pred             CCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC-Cc-EEEeecCCC---CcCCCeeEEEEECCCCCEEEEe-c
Confidence                 0 123444 77888898677788878899999775 33 222321100   0134679999999999866654 4


Q ss_pred             CCcEEEEEccCCeeEEEeec-----ccccceecccccCCCCCCccceecce-eeEEEcCCCceEEEEec--C----Ccce
Q 005459          328 SRGLTVWSVSGCRLMSTIRQ-----ISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE--G----SSER  395 (696)
Q Consensus       328 Dg~v~vW~~~~~~~~~~l~~-----~~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~--~----~~~~  395 (696)
                       +++.+|+..+++.......     .....|.++..++++    ..+++.. -+..|+..+.+. ....  .    ....
T Consensus       471 -~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g----~lWigt~~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~  544 (795)
T 4a2l_A          471 -SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK----RLWIGGEEGLSVFKQEGLDI-QKASILPVSNVTKLF  544 (795)
T ss_dssp             -SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC----CEEEEESSCEEEEEEETTEE-EECCCSCSCGGGGSC
T ss_pred             -CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC----CEEEEeCCceEEEeCCCCeE-EEecCCCCCCCCCCe
Confidence             6899999887754322111     112346666666665    5554322 344555554443 1110  0    0112


Q ss_pred             EEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCcc
Q 005459          396 VLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL  475 (696)
Q Consensus       396 v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~  475 (696)
                      |..+         ..|..-.+|.-..+  .++.+....   ...........  -.+..|.+++.+++|+..+ ++.+|+
T Consensus       545 i~~i---------~~d~~g~lWigT~~--Gl~~~d~~~---~~~~~~~~~~g--l~~~~i~~i~~d~~g~lWi-~t~~Gl  607 (795)
T 4a2l_A          545 TNCI---------YEASNGIIWVGTRE--GFYCFNEKD---KQIKRYNTTNG--LPNNVVYGILEDSFGRLWL-STNRGI  607 (795)
T ss_dssp             EEEE---------EECTTSCEEEEESS--CEEEEETTT---TEEEEECGGGT--CSCSCEEEEEECTTSCEEE-EETTEE
T ss_pred             eEEE---------EECCCCCEEEEeCC--CceeECCCC---CcEEEeCCCCC--CchhheEEEEECCCCCEEE-EcCCce
Confidence            2211         11222223332211  222222110   01111110000  1134589999999998654 446888


Q ss_pred             EEEEccCCceEecCC
Q 005459          476 ILYDIRQKKWRVFGD  490 (696)
Q Consensus       476 i~w~~~sg~w~~f~~  490 (696)
                      ..|+..+++++.|..
T Consensus       608 ~~~~~~~~~~~~~~~  622 (795)
T 4a2l_A          608 SCFNPETEKFRNFTE  622 (795)
T ss_dssp             EEEETTTTEEEEECG
T ss_pred             EEEcCCCCcEEEcCC
Confidence            899999999887753

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.03  E-value=0.00036  Score=79.82  Aligned_cols=81  Identities=16%  Similarity=0.187  Sum_probs=56.3

Q ss_pred             EEEcCCCcEEEEEecCCe-------------------EEEEEccCCCceeeEEeecc---CCCCCCCCCCeEEEEECCCC
Q 005459          262 ASIAPEQQILAVGTRRGV-------------------VELYDLAESASLIRTVSLYD---WGYSMDDTGPVSCIAWTPDN  319 (696)
Q Consensus       262 v~~sp~~~~la~g~~dg~-------------------v~vw~~~~~~~~~~~~~~~~---~~~~~~h~g~V~~l~~spdg  319 (696)
                      ++++|+..++.++..++.                   |..+|.++ ++.+-.++...   +.+  ....+........+|
T Consensus       240 ~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T-G~~~W~~~~~~~d~wd~--~~~~~~~l~d~~~~G  316 (689)
T 1yiq_A          240 FAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT-GEYVWHYQTTPGDAWDY--TATQHMILAELPIDG  316 (689)
T ss_dssp             EEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT-CCEEEEEESSTTCCSCC--CCCSCEEEEEEEETT
T ss_pred             eeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC-CceeEeeecCCcccccc--cCCCCcEEEeeccCC
Confidence            789999999999998874                   99999988 66554444311   111  012233333333477


Q ss_pred             C---eEEEEEcCCcEEEEEccCCeeEEEe
Q 005459          320 S---AFAVGWKSRGLTVWSVSGCRLMSTI  345 (696)
Q Consensus       320 ~---~lasg~~Dg~v~vW~~~~~~~~~~l  345 (696)
                      +   .++.+..+|.+.++|..+++++...
T Consensus       317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~  345 (689)
T 1yiq_A          317 KPRKVLMQAPKNGFFYVIDRATGELLSAK  345 (689)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             cEEEEEEEECCCCeEEEEECCCCCEeccc
Confidence            6   7999999999999999999887443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.98  E-value=0.00087  Score=76.66  Aligned_cols=264  Identities=14%  Similarity=0.129  Sum_probs=143.9

Q ss_pred             CCcEEEEEecCCeEEEEEccCCCceeeEEeec-cCCCCCCCCCCeEEEEECC---CCCeEEEEE-----cCCcEEEEEcc
Q 005459          267 EQQILAVGTRRGVVELYDLAESASLIRTVSLY-DWGYSMDDTGPVSCIAWTP---DNSAFAVGW-----KSRGLTVWSVS  337 (696)
Q Consensus       267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~-~~~~~~~h~g~V~~l~~sp---dg~~lasg~-----~Dg~v~vW~~~  337 (696)
                      ++..|.+++.||.|..+|.++ ++.+-..... +.       .....+..+|   +|..++..+     .|+.|..||..
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~T-G~~~W~~~~~~~~-------~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~  191 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKT-GQRAWSVDTRADH-------KRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAE  191 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTT-CCEEEEEECCSCT-------TSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETT
T ss_pred             ECCEEEEEccCCEEEEEECCC-CCEeeeecCcCCC-------CCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECC
Confidence            356788899999999999988 6655444431 10       0011111222   565554332     37899999999


Q ss_pred             CCeeEEEeecc-cc-----------------------------cceecccccCCCCCCccceecce--------------
Q 005459          338 GCRLMSTIRQI-SL-----------------------------SSISSPIVKPNQDCKYEPLMSGT--------------  373 (696)
Q Consensus       338 ~~~~~~~l~~~-~~-----------------------------~~v~~~~~sp~~~~~~~~l~sg~--------------  373 (696)
                      +++++.++... +.                             .....++++|+.    ..+..+.              
T Consensus       192 tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~----~~vy~~~~~g~~w~~~~~~~~  267 (689)
T 1yiq_A          192 TGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL----NLLYIGVGNGSLWDPKWRSQA  267 (689)
T ss_dssp             TCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT----TEEEEECCCEESSCHHHHHTT
T ss_pred             CCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC----CEEEEeCCCCCccccCCCCCC
Confidence            99988776521 00                             001234555543    2222221              


Q ss_pred             --------eeEEEcCCCceEEEEecC--Cc-------ceEE--EEec-ce---eeeeccCCCCceeeeeeecCCeEEEEe
Q 005459          374 --------SMMQWDEYGYRLYAIEEG--SS-------ERVL--IFSF-GK---CCLNRGVSGMTYARQVIYGEDRLLVVQ  430 (696)
Q Consensus       374 --------~~~~W~~~~~~l~~~~~~--~~-------~~v~--~~~~-~~---~~~s~~~d~~~~~w~~~~~~~~~~~~~  430 (696)
                              .+..||+++++.+-..+.  |.       ....  .+.+ ++   .++.++.++.++++|..+|+..-...-
T Consensus       268 ~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~  347 (689)
T 1yiq_A          268 KGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGI  347 (689)
T ss_dssp             CSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred             CCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccc
Confidence                    378899998887665532  21       1122  2222 33   677888889888888766553211100


Q ss_pred             cCCC-----------C----------cceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC-----------------
Q 005459          431 SEDT-----------D----------ELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL-----------------  472 (696)
Q Consensus       431 ~~~~-----------~----------~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~-----------------  472 (696)
                      ....           +          ......+.+|...-+++|.  .++++|+...+.++..                 
T Consensus       348 ~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~--~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~  425 (689)
T 1yiq_A          348 VPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQ--PMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNP  425 (689)
T ss_dssp             SCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSS--CCEEETTTTEEEEEEEECCEEEECCSSCCCCCS
T ss_pred             cccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCC--cceECCCCCEEEEeccccceeeeeccccccccc
Confidence            0000           0          0001122234444455653  4789999888877632                 


Q ss_pred             ----------------------------CccE-EEEccCCc--eEecCCccceeeeEEE-e-EeeeCcEEEEEEeecCCC
Q 005459          473 ----------------------------HGLI-LYDIRQKK--WRVFGDITQEQKIQSK-G-LLWLGKIIVVCNYIDSSN  519 (696)
Q Consensus       473 ----------------------------dG~i-~w~~~sg~--w~~f~~~~~e~~~~v~-~-~~w~~~~lv~~~~~~~~~  519 (696)
                                                  +|.+ .||+.+|+  |+.-..      .... + +.-.++.+..+     +.
T Consensus       426 ~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~------~~~~~g~~~tagglvf~g-----t~  494 (689)
T 1yiq_A          426 FKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV------TIFNGGTLSTAGNLVFEG-----SA  494 (689)
T ss_dssp             CTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES------SSCCCCEEEETTTEEEEE-----CT
T ss_pred             cccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC------CCccCccceECCCEEEEE-----CC
Confidence                                        3667 89998886  543110      1111 2 22234455554     44


Q ss_pred             eEEEEEeeCCCCCccceeEEeecC----CccEEEEccCCEEEE
Q 005459          520 TYELLFYPRYHLDQSSLLCRKSLL----AKPIVMDVYEDYILV  558 (696)
Q Consensus       520 ~~~lr~y~~~~l~~~~~~~~~~~~----~~~l~~~~~~~~llv  558 (696)
                      +..|+.|+.+   ....+-+.+++    +.|+....+|...++
T Consensus       495 dg~l~a~D~~---tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          495 DGRVIAYAAD---TGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             TSEEEEEETT---TCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCcEEEEECC---CCccceeeeCCCCcccCceEEEECCEEEEE
Confidence            5789999875   23345555555    567777766664444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.97  E-value=0.00051  Score=72.74  Aligned_cols=65  Identities=22%  Similarity=0.202  Sum_probs=42.9

Q ss_pred             EEEcCCCcEEEEEec-CCeEEEEEccCCC--ceeeEEeeccCCCCCCC------CCCeEEEEECCCCCeEEEEE
Q 005459          262 ASIAPEQQILAVGTR-RGVVELYDLAESA--SLIRTVSLYDWGYSMDD------TGPVSCIAWTPDNSAFAVGW  326 (696)
Q Consensus       262 v~~sp~~~~la~g~~-dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~h------~g~V~~l~~spdg~~lasg~  326 (696)
                      +.+|||+++|-++.. .+.|.+||+.+..  +++..+.....-....|      .+.-..+++||||++|.++.
T Consensus       326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            899999999888776 6899999997533  33333332100000001      12357899999999999987

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.94  E-value=0.00094  Score=76.20  Aligned_cols=265  Identities=14%  Similarity=0.089  Sum_probs=144.8

Q ss_pred             CCcEEEEEecCCeEEEEEccCCCceeeEEeec-cCCCCCC-CCCCeEEEEECCCCCeEEEEEc------CCcEEEEEccC
Q 005459          267 EQQILAVGTRRGVVELYDLAESASLIRTVSLY-DWGYSMD-DTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSG  338 (696)
Q Consensus       267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~-~~~~~~~-h~g~V~~l~~spdg~~lasg~~------Dg~v~vW~~~~  338 (696)
                      ++..|.+++.|+.+..+|..+ ++.+-.+... +...... ...++.     .++ .++++..      ++.|..+|..+
T Consensus       127 ~~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~~p~v-----~~~-~v~v~~~~~~~~~~g~v~a~D~~t  199 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAAT-GKEVWHQNTFEGQKGSLTITGAPRV-----FKG-KVIIGNGGAEYGVRGYITAYDAET  199 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTT-CCEEEEEETTTTCCSSCBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETTT
T ss_pred             ECCEEEEEcCCCEEEEEECCC-CCEEeeecCCcCcCcCcccccCcEE-----ECC-EEEEEecccccCCCCEEEEEECCC
Confidence            466788889999999999988 6666555542 1000000 011111     144 4444442      78999999999


Q ss_pred             CeeEEEeeccccc-------------------------------ceecccccCCCCCCccceecce--------------
Q 005459          339 CRLMSTIRQISLS-------------------------------SISSPIVKPNQDCKYEPLMSGT--------------  373 (696)
Q Consensus       339 ~~~~~~l~~~~~~-------------------------------~v~~~~~sp~~~~~~~~l~sg~--------------  373 (696)
                      ++++.++......                               ....++++|+.    ..+..+.              
T Consensus       200 G~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~----~~vy~~~~~~~~w~~~~~~~~  275 (677)
T 1kb0_A          200 GERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL----NTMYVGTGNGSPWSHKVRSPK  275 (677)
T ss_dssp             CCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT----TEEEEECCCEESSCHHHHSTT
T ss_pred             CcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC----CEEEEECCCCccccCCCCCcc
Confidence            9988777542111                               01234455554    2222111              


Q ss_pred             --------eeEEEcCCCceEEEEecC--Cc--------ceE-EEEec-c---eeeeeccCCCCceeeeeeecCCeEEEEe
Q 005459          374 --------SMMQWDEYGYRLYAIEEG--SS--------ERV-LIFSF-G---KCCLNRGVSGMTYARQVIYGEDRLLVVQ  430 (696)
Q Consensus       374 --------~~~~W~~~~~~l~~~~~~--~~--------~~v-~~~~~-~---~~~~s~~~d~~~~~w~~~~~~~~~~~~~  430 (696)
                              ++..+|++++++.-..+.  |.        ..+ ..... +   +.++.++.++.+.++|..+|+..-.+..
T Consensus       276 ~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~  355 (677)
T 1kb0_A          276 GGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNF  355 (677)
T ss_dssp             CCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred             CCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccc
Confidence                    378889888877655432  21        112 22222 3   5678888888888887666654211111


Q ss_pred             cCCC------Cccee-----------EEeecCeeeecCCCceEEEEEcCCCCEEEEEeCC--------------------
Q 005459          431 SEDT------DELKI-----------LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH--------------------  473 (696)
Q Consensus       431 ~~~~------~~~~w-----------~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~d--------------------  473 (696)
                      +...      .....           ....+|...-+++|.  .++++|++.++.+...+                    
T Consensus       356 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~--~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~  433 (677)
T 1kb0_A          356 VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWH--PMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGK  433 (677)
T ss_dssp             SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSS--CCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTS
T ss_pred             cccCcccccCCCCceeeccccCcCCCccEECcCcccccCCC--CceEcCCCCEEEEeChhcceeeecccccccccccccc
Confidence            1000      00000           012233333345552  67899999888776432                    


Q ss_pred             -----------------------ccE-EEEccCCc--eEecCCccceeeeEEE-e-EeeeCcEEEEEEeecCCCeEEEEE
Q 005459          474 -----------------------GLI-LYDIRQKK--WRVFGDITQEQKIQSK-G-LLWLGKIIVVCNYIDSSNTYELLF  525 (696)
Q Consensus       474 -----------------------G~i-~w~~~sg~--w~~f~~~~~e~~~~v~-~-~~w~~~~lv~~~~~~~~~~~~lr~  525 (696)
                                             |.+ .||+.+|+  |+.-.      ...+. + +.-.++.++++     +.+..+++
T Consensus       434 ~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~------~~~~~~g~~~~~g~~v~~g-----~~dg~l~a  502 (677)
T 1kb0_A          434 PQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH------VSPWNGGTLTTAGNVVFQG-----TADGRLVA  502 (677)
T ss_dssp             TTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE------SSSCCCCEEEETTTEEEEE-----CTTSEEEE
T ss_pred             cccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC------CCCCcCcceEeCCCEEEEE-----CCCCcEEE
Confidence                                   667 89998886  54311      11111 2 22234555554     34578999


Q ss_pred             eeCCCCCccceeEEeecCC----ccEEEEccCCEEEE
Q 005459          526 YPRYHLDQSSLLCRKSLLA----KPIVMDVYEDYILV  558 (696)
Q Consensus       526 y~~~~l~~~~~~~~~~~~~----~~l~~~~~~~~llv  558 (696)
                      |+..   ....+++..+++    .|+.....|+..++
T Consensus       503 ~D~~---tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          503 YHAA---TGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EETT---TCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             EECC---CCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            9875   333566666654    67777776665554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.92  E-value=0.0007  Score=71.07  Aligned_cols=146  Identities=14%  Similarity=0.031  Sum_probs=74.6

Q ss_pred             CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccCCeeEEEe
Q 005459          268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTI  345 (696)
Q Consensus       268 ~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~~~~~~~l  345 (696)
                      +..+.+|..+|.+..+|..+ ++.+-........... ....+..+.-+|  ++..+..++.++.+..+|..+++.+...
T Consensus       188 ~~~v~~g~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~  265 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQ-GQMIWQQRISQATGST-EIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKR  265 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTT-CCEEEEEECCC------------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCC-CcEEEEEecccCCCCc-ccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeec
Confidence            45677788899999999987 5554444321000000 000000111122  3456777788899999999888877665


Q ss_pred             ecccccceecccccCCCCCCccceecc--eeeEEEcCCCceEEEEecCC-cceEEEEe-cceeeeeccCCCCceeeeeee
Q 005459          346 RQISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEGS-SERVLIFS-FGKCCLNRGVSGMTYARQVIY  421 (696)
Q Consensus       346 ~~~~~~~v~~~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~~~~~~-~~~v~~~~-~~~~~~s~~~d~~~~~w~~~~  421 (696)
                      ...   ....+... ++    ..++..  ..+..++..+++........ ...+.... .+..+..++.++.+..++..+
T Consensus       266 ~~~---~~~~~~~~-~~----~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~t  337 (376)
T 3q7m_A          266 ELG---SVNDFIVD-GN----RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVED  337 (376)
T ss_dssp             CCC---CEEEEEEE-TT----EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTT
T ss_pred             cCC---CCCCceEE-CC----EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCC
Confidence            432   12222222 11    222221  16777888777665544311 11111111 144555566666666666544


Q ss_pred             cC
Q 005459          422 GE  423 (696)
Q Consensus       422 ~~  423 (696)
                      ++
T Consensus       338 G~  339 (376)
T 3q7m_A          338 GR  339 (376)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.90  E-value=0.006  Score=64.59  Aligned_cols=266  Identities=12%  Similarity=0.062  Sum_probs=134.5

Q ss_pred             EEc--CCCcEEEE-EecCCeEEEEEccCCC---ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC------Cc
Q 005459          263 SIA--PEQQILAV-GTRRGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS------RG  330 (696)
Q Consensus       263 ~~s--p~~~~la~-g~~dg~v~vw~~~~~~---~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D------g~  330 (696)
                      .++  +++++|.+ |..++.|.|+|+.+..   +..+++...+..... -...-..+..+||| .++++..+      ++
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~-g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~  165 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVS-GYSRLHTVHCGPDA-IYISALGNEEGEGPGG  165 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHH-CEEEEEEEEECSSC-EEEEEEEETTSCSCCE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccccc-CCCcccceeECCCe-EEEEcCCCcCCCCCCe
Confidence            345  66666555 5667899999987521   344455210000000 00123457789999 76676665      78


Q ss_pred             EEEEEccCCeeEEEeeccccc-c-eecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceE-EEEecceeeee
Q 005459          331 LTVWSVSGCRLMSTIRQISLS-S-ISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERV-LIFSFGKCCLN  407 (696)
Q Consensus       331 v~vW~~~~~~~~~~l~~~~~~-~-v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v-~~~~~~~~~~s  407 (696)
                      +.+.|..+.+.+.++.-.... . -..+.|+|++    +.+++.    .|.            ..... .-+.+. .+. 
T Consensus       166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~----~~mvsS----~wg------------~p~~~~~g~~~~-~~~-  223 (462)
T 2ece_A          166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN----EVLVSS----EWA------------VPNTIEDGLKLE-HLK-  223 (462)
T ss_dssp             EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT----TEEEEC----BCC------------CHHHHTTCCCTT-THH-
T ss_pred             EEEEECCCCeEEEEEccCCCCccccceEEECCCC----CEEEEc----cCc------------Cccccccccchh-hhh-
Confidence            999999999888877632111 0 1112234444    222211    010            00000 000000 000 


Q ss_pred             ccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEE--cCCCCEEEEEeC------CccE-EE
Q 005459          408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA--SKDGMFLAVAGL------HGLI-LY  478 (696)
Q Consensus       408 ~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~--s~dG~~la~ag~------dG~i-~w  478 (696)
                      +..+.++.+|++..++.              -+.+.+..    ....-+.+.|  +|||+++.++..      ++.+ +|
T Consensus       224 ~~~~d~V~v~D~~~~k~--------------~~tI~vg~----~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~  285 (462)
T 2ece_A          224 DRYGNRIHFWDLRKRKR--------------IHSLTLGE----ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLW  285 (462)
T ss_dssp             HHSCCEEEEEETTTTEE--------------EEEEESCT----TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEE
T ss_pred             hccCCEEEEEECCCCcE--------------eeEEecCC----CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEE
Confidence            02334455555433211              00111110    0112345555  999999888875      5677 88


Q ss_pred             EccCCceEecCCc---cc--ee------------eeEEEeEee--eCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEE
Q 005459          479 DIRQKKWRVFGDI---TQ--EQ------------KIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCR  539 (696)
Q Consensus       479 ~~~sg~w~~f~~~---~~--e~------------~~~v~~~~w--~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~  539 (696)
                      ....|+|+.....   ..  +.            .-...++..  .+++|.+++.    ....|++|+...-.+..+...
T Consensus       286 ~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr----g~d~VavfdV~d~~~~~lv~~  361 (462)
T 2ece_A          286 FYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW----GIGEVRQYDISNPFKPVLTGK  361 (462)
T ss_dssp             EEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET----TTTEEEEEECSSTTSCEEEEE
T ss_pred             EecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC----CCCEEEEEEecCCCCcEEEEE
Confidence            7777888643210   00  00            001223444  3678888743    235899999752222223333


Q ss_pred             eecC-----------------CccEEEEccCCEEEEEE------------cCceEEEEEEEEec
Q 005459          540 KSLL-----------------AKPIVMDVYEDYILVTY------------RPFDVHIFHVKLFG  574 (696)
Q Consensus       540 ~~~~-----------------~~~l~~~~~~~~llv~~------------~d~~~~l~~~~~~~  574 (696)
                      ..+-                 .+-+.++++|++|+|+.            .+....++.++++.
T Consensus       362 I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~  425 (462)
T 2ece_A          362 VKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANP  425 (462)
T ss_dssp             EECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECT
T ss_pred             EEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecC
Confidence            3332                 24588999999999976            33456777776653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.86  E-value=0.00042  Score=70.97  Aligned_cols=105  Identities=6%  Similarity=0.048  Sum_probs=67.1

Q ss_pred             EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee
Q 005459          262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL  341 (696)
Q Consensus       262 v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~  341 (696)
                      +.+.+++. |.+|+.++.|..||.+  ++.......        ....+.++...++|...+..   +++..+| .++..
T Consensus       142 ~~~~~~g~-l~vgt~~~~l~~~d~~--g~~~~~~~~--------~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~  206 (330)
T 3hxj_A          142 PIVSEDGT-IYVGSNDNYLYAINPD--GTEKWRFKT--------NDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTE  206 (330)
T ss_dssp             CEECTTSC-EEEECTTSEEEEECTT--SCEEEEEEC--------SSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCE
T ss_pred             eEEcCCCE-EEEEcCCCEEEEECCC--CCEeEEEec--------CCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcE
Confidence            55666777 5567888999999876  444444444        34457778888898866654   8999999 56555


Q ss_pred             EEEeecccccceecccccCCCCCCccceecc--eeeEEEcCCCceEE
Q 005459          342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLY  386 (696)
Q Consensus       342 ~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~  386 (696)
                      ....... ...+.++..++++    ..++..  ..+..++..+..++
T Consensus       207 ~~~~~~~-~~~~~~~~~~~~g----~l~v~t~~~gl~~~~~~g~~~~  248 (330)
T 3hxj_A          207 KWNFYAG-YWTVTRPAISEDG----TIYVTSLDGHLYAINPDGTEKW  248 (330)
T ss_dssp             EEEECCS-SCCCSCCEECTTS----CEEEEETTTEEEEECTTSCEEE
T ss_pred             EEEEccC-CcceeceEECCCC----eEEEEcCCCeEEEECCCCCEeE
Confidence            5555433 3457777777765    555432  24555565444443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.82  E-value=1.5e-06  Score=91.90  Aligned_cols=175  Identities=10%  Similarity=0.002  Sum_probs=76.7

Q ss_pred             CCcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCC
Q 005459          229 NGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD  305 (696)
Q Consensus       229 dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~  305 (696)
                      ++..+++++.|+.+..||..+++..   .. ....+..+.++++++++++.||.|+.||..+ ++.+..+..        
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~~--------   77 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLPF--------   77 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSC--------
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCC-Cceeeeeec--------
Confidence            3444555555666666665554432   11 2222344556788888889999999999987 555444432        


Q ss_pred             CCC-CeEE-EEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcC
Q 005459          306 DTG-PVSC-IAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE  380 (696)
Q Consensus       306 h~g-~V~~-l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~  380 (696)
                      +.+ .+.+ ...+ ++..+++|+.|+.+..||..+++.+.++..++     ...++|++    ..+..+.   .+..|++
T Consensus        78 ~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~----~~v~~~~~dg~v~a~d~  147 (369)
T 2hz6_A           78 TIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPST----SLLYLGRTEYTITMYDT  147 (369)
T ss_dssp             CHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCS
T ss_pred             cCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccC----CEEEEEecCCEEEEEEC
Confidence            111 0100 0011 34567788889999999999998887776542     12345544    4555444   7888998


Q ss_pred             CCceEEEEecCCcceEEEEec----ceeeeeccCCCCceeeeeeecC
Q 005459          381 YGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGE  423 (696)
Q Consensus       381 ~~~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~~~~~~  423 (696)
                      ++++++.....+...-..+..    ...+..++.++.+..|+..+++
T Consensus       148 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          148 KTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             SSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred             CCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence            877654332211000011111    1445556667777777655444

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.82  E-value=0.00039  Score=76.22  Aligned_cols=95  Identities=12%  Similarity=0.200  Sum_probs=64.3

Q ss_pred             CeEEEEEcCCCcEEEEEe-cCCeEEEEEccCCCc------------eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE
Q 005459          258 DAVCASIAPEQQILAVGT-RRGVVELYDLAESAS------------LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV  324 (696)
Q Consensus       258 ~~v~v~~sp~~~~la~g~-~dg~v~vw~~~~~~~------------~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las  324 (696)
                      .+-++.++|||+++.+++ .+.+|.++|+++ .+            ....+..         ......++|+|||+...+
T Consensus       278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~~~v~~~v~v---------G~gP~h~aF~~dG~aY~t  347 (595)
T 1fwx_A          278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPRSAVVAEPEL---------GLGPLHTAFDGRGNAYTS  347 (595)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGGGGEEECCBC---------CSCEEEEEECTTSEEEEE
T ss_pred             CceEEEEcCCCCEEEEeCCCCCeEEEEECcc-cccccccccCcccceEEEcCC---------CCCcceEEECCCCeEEEE
Confidence            344589999999776655 678999999985 21            1112221         234788999999976677


Q ss_pred             EEcCCcEEEEEccC----------CeeEEEeeccc----ccceecccccCCC
Q 005459          325 GWKSRGLTVWSVSG----------CRLMSTIRQIS----LSSISSPIVKPNQ  362 (696)
Q Consensus       325 g~~Dg~v~vW~~~~----------~~~~~~l~~~~----~~~v~~~~~sp~~  362 (696)
                      ...|+.|.+||+..          .+.+.++.-|-    ...-....++||+
T Consensus       348 ~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG  399 (595)
T 1fwx_A          348 LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN  399 (595)
T ss_dssp             ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS
T ss_pred             EecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC
Confidence            88899999999976          45666665431    1222344566766

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.81  E-value=0.00023  Score=78.04  Aligned_cols=239  Identities=12%  Similarity=0.035  Sum_probs=136.6

Q ss_pred             EeCCcEEEEeecc-CCceeeeeeeccee-----cCCCCeEEEEE-c-CCCcEEEEEe------------------cCCeE
Q 005459          227 YSNGQLMSCSVSK-KGLKLAEFIKIDKE-----LGSGDAVCASI-A-PEQQILAVGT------------------RRGVV  280 (696)
Q Consensus       227 s~dG~~~~~~~~d-~~~~~~~~~~~~~~-----~~~~~~v~v~~-s-p~~~~la~g~------------------~dg~v  280 (696)
                      .+||+.++++..+ ..+.+.|..+.+..     ..-.++-.+++ + |+++++.+++                  .++.+
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence            4588877775543 34556665554322     11123334777 5 9999998885                  34688


Q ss_pred             EEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC-------------------------------
Q 005459          281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-------------------------------  329 (696)
Q Consensus       281 ~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg-------------------------------  329 (696)
                      .+.|.++ .+...++..         .+.-.-++.+|||+++++.+++.                               
T Consensus       178 tvID~~t-~~v~~qI~V---------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~  247 (595)
T 1fwx_A          178 TAVDADK-WEVAWQVLV---------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA  247 (595)
T ss_dssp             EEEETTT-TEEEEEEEE---------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred             EEEECCC-CeEEEEEEe---------CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence            9999887 666666654         12345578999999999988653                               


Q ss_pred             -------cEEEEEccC--Cee-EEEeecccccceecccccCCCCCCccceecce----eeEEEcCCCce-----------
Q 005459          330 -------GLTVWSVSG--CRL-MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYR-----------  384 (696)
Q Consensus       330 -------~v~vW~~~~--~~~-~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~-----------  384 (696)
                             +|.|-|..+  +.. +.++...  ....++.++||+    +.+....    ++.+++..+.+           
T Consensus       248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDG----k~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~  321 (595)
T 1fwx_A          248 GDYQELNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDK----KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS  321 (595)
T ss_dssp             TCSEEETTEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTS----SEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred             CCeeEECcEEEEeCcccCCceeEEEEecC--CCceEEEEcCCC----CEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence                   467777765  333 4455432  235667899998    5544332    77777777542           


Q ss_pred             -EEEEecCCcceE-EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee-cCCCceEEEEE
Q 005459          385 -LYAIEEGSSERV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQHVAA  460 (696)
Q Consensus       385 -l~~~~~~~~~~v-~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~I~~va~  460 (696)
                       ......-..... ++|++ +..-++.-.|+.+..|++..+..   .+.|....   -..-+++..|. +|+..-....+
T Consensus       322 ~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~---~~~g~~~~---~vi~kidV~yqpGh~~~~~g~t~  395 (595)
T 1fwx_A          322 AVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIR---AYAGEKVD---PIKDKLDVHYQPGHLKTVMGETL  395 (595)
T ss_dssp             GEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHH---HHHTCSCC---CEEEEEECSSCEEEEEETTTTST
T ss_pred             ceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhh---hhcccccc---eeEEEeecccccccceeccceEe
Confidence             222222223333 67777 64445666788888888754210   00000000   00111222332 33211122356


Q ss_pred             cCCCCEEEEEeC---Ccc-----------EEEEccCCceEe
Q 005459          461 SKDGMFLAVAGL---HGL-----------ILYDIRQKKWRV  487 (696)
Q Consensus       461 s~dG~~la~ag~---dG~-----------i~w~~~sg~w~~  487 (696)
                      +|||++|.++.+   |.+           .++|+.+++-++
T Consensus       396 ~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l  436 (595)
T 1fwx_A          396 DATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVL  436 (595)
T ss_dssp             TCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred             CCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence            899999998854   554           578886665443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.78  E-value=0.0056  Score=69.74  Aligned_cols=125  Identities=10%  Similarity=0.145  Sum_probs=80.3

Q ss_pred             eEEEEEcCCC---cEEEEEecCCeEEEEEccCCCceeeEEeeccCC-------------------------CCCCCCCCe
Q 005459          259 AVCASIAPEQ---QILAVGTRRGVVELYDLAESASLIRTVSLYDWG-------------------------YSMDDTGPV  310 (696)
Q Consensus       259 ~v~v~~sp~~---~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~-------------------------~~~~h~g~V  310 (696)
                      ++.+....+|   +.+++++.+|.+.++|..+ ++.+........+                         ..++..|..
T Consensus       315 p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t-G~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~  393 (677)
T 1kb0_A          315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTN-GKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH  393 (677)
T ss_dssp             CEEEEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS
T ss_pred             cEEEecccCCcEeeEEEEECCCCEEEEEECCC-CCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc
Confidence            4445555688   7899999999999999988 7766554421100                         000000000


Q ss_pred             --EEEEECCCCCeEEEEEcC-------------------------------------------CcEEEEEccCCeeEEEe
Q 005459          311 --SCIAWTPDNSAFAVGWKS-------------------------------------------RGLTVWSVSGCRLMSTI  345 (696)
Q Consensus       311 --~~l~~spdg~~lasg~~D-------------------------------------------g~v~vW~~~~~~~~~~l  345 (696)
                        ..++|+|++..+.+...+                                           |.|..||+.+++.+.++
T Consensus       394 ~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~  473 (677)
T 1kb0_A          394 NWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSV  473 (677)
T ss_dssp             CSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEE
T ss_pred             CCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeec
Confidence              257899998888876542                                           78999999999988887


Q ss_pred             ecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEec
Q 005459          346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE  390 (696)
Q Consensus       346 ~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~  390 (696)
                      +..  ..+....+..++    ..++.|.   .+.+||.++++++....
T Consensus       474 ~~~--~~~~~g~~~~~g----~~v~~g~~dg~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          474 EHV--SPWNGGTLTTAG----NVVFQGTADGRLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             EES--SSCCCCEEEETT----TEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCC--CCCcCcceEeCC----CEEEEECCCCcEEEEECCCCceeeeee
Confidence            643  123333344444    4444343   78889988887766654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.73  E-value=0.0043  Score=64.84  Aligned_cols=249  Identities=8%  Similarity=-0.121  Sum_probs=131.5

Q ss_pred             eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE----------cCCcEEEEEccCCeeEEEeecc
Q 005459          279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW----------KSRGLTVWSVSGCRLMSTIRQI  348 (696)
Q Consensus       279 ~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~----------~Dg~v~vW~~~~~~~~~~l~~~  348 (696)
                      +|.+.|.++ .+.+.++..        -..+  .+.+||||+.+.++.          .++.|.+||+.+++.+.++.-+
T Consensus        47 ~vsvID~~t-~~v~~~i~v--------G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~  115 (368)
T 1mda_H           47 ENWVSCAGC-GVTLGHSLG--------AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP  115 (368)
T ss_dssp             EEEEEETTT-TEEEEEEEE--------CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET
T ss_pred             eEEEEECCC-CeEEEEEeC--------CCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence            888999988 788888876        3445  799999999999886          4689999999999999998632


Q ss_pred             cc------cceecccccCCCCCCccceecc-----eeeEE--EcCCCceEEEEecCCcceEEEEec--ceeeeeccCCCC
Q 005459          349 SL------SSISSPIVKPNQDCKYEPLMSG-----TSMMQ--WDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGM  413 (696)
Q Consensus       349 ~~------~~v~~~~~sp~~~~~~~~l~sg-----~~~~~--W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~  413 (696)
                      +.      ..-..++++||+    +.+..+     ..+.+  +|+.+   +....-. .. ..+.+  ....++.+.|+.
T Consensus       116 ~~~~~~~g~~P~~ia~SpDG----k~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~-~~~~p~g~~~~~~~~~dg~  186 (368)
T 1mda_H          116 DAPRFSVGPRVHIIGNCASS----ACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC-FHIHPGAAATHYLGSCPAS  186 (368)
T ss_dssp             TSCSCCBSCCTTSEEECTTS----SCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC-CCCEEEETTEEECCCCTTS
T ss_pred             CccccccCCCcceEEEcCCC----CEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc-eEEccCCCeEEEEEcCCCC
Confidence            10      224567899998    544421     14555  67655   1111100 00 11122  223344555655


Q ss_pred             ceeeeeeec---CCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecC
Q 005459          414 TYARQVIYG---EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFG  489 (696)
Q Consensus       414 ~~~w~~~~~---~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~  489 (696)
                      +..-++...   ..++           .+.. .  ....-...|.   + ++++..++..+. |.+ +.|..++.-+...
T Consensus       187 ~~~vd~~~~~~~~~~v-----------~~~~-t--~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~  247 (368)
T 1mda_H          187 LAASDLAAAPAAAGIV-----------GAQC-T--GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKA  247 (368)
T ss_dssp             CEEEECCSSCCCCEEC-----------CCCS-C--TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEEC
T ss_pred             EEEEECccccccCCeE-----------EEEe-e--eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEE
Confidence            543332210   0000           0000 0  0011123454   3 677777666666 888 8898654322211


Q ss_pred             Ccc------ceeeeEEEe---Eeee--CcEEEEEEeecCCC-----eEEEEEeeCCCCCccceeEEeecCCc--cEEEEc
Q 005459          490 DIT------QEQKIQSKG---LLWL--GKIIVVCNYIDSSN-----TYELLFYPRYHLDQSSLLCRKSLLAK--PIVMDV  551 (696)
Q Consensus       490 ~~~------~e~~~~v~~---~~w~--~~~lv~~~~~~~~~-----~~~lr~y~~~~l~~~~~~~~~~~~~~--~l~~~~  551 (696)
                      ...      ......-.+   +.+.  ++.+.++... ..+     .....+++...+.   .+.+.++...  -+.+++
T Consensus       248 ~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~-~~~~~~~~~~~~~ViD~~t~~---vv~~i~vg~~p~gi~~s~  323 (368)
T 1mda_H          248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE-HSRSCLAAAENTSSVTASVGQ---TSGPISNGHDSDAIIAAQ  323 (368)
T ss_dssp             CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE-CSSCTTSCEEEEEEEESSSCC---EEECCEEEEEECEEEECC
T ss_pred             EEEeccccccccccccCcceeeEEcCCCCEEEEEecc-ccCcccccCCCEEEEECCCCe---EEEEEECCCCcceEEECC
Confidence            100      011111112   3443  4455554210 101     2234488775221   2222222222  367778


Q ss_pred             cCCEEEEEEc--CceEEEEEE
Q 005459          552 YEDYILVTYR--PFDVHIFHV  570 (696)
Q Consensus       552 ~~~~llv~~~--d~~~~l~~~  570 (696)
                      ++.+++++..  ++++.+++.
T Consensus       324 Dg~~l~va~~~~~~~VsVID~  344 (368)
T 1mda_H          324 DGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             SSSCEEEEEETTTTEEEEEES
T ss_pred             CCCEEEEEccCCCCeEEEEEC
Confidence            8887777553  788888875

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.70  E-value=0.14  Score=59.18  Aligned_cols=205  Identities=11%  Similarity=0.075  Sum_probs=105.2

Q ss_pred             CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459          258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       258 ~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~  336 (696)
                      ..+. +...+++++. +|+.++-+..|+..+ ... ..+.. .   .......|.++...++|+..+ |..++++..++.
T Consensus       363 ~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~-~~~-~~~~~-~---~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~  434 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLW-IGTDGGGINVFENGK-RVA-IYNKE-N---RELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNT  434 (781)
T ss_dssp             SCEEEEEECTTSCEE-EEEBSSCEEEEETTE-EEE-ECC---------CCCSBEEEEEECTTSCEEE-EETTEEEEEECS
T ss_pred             cceEEEEEcCCCCEE-EEeCCCcEEEEECCC-CeE-EEccC-C---CCCCCcceEEEEECCCCCEEE-EeccCCEEEEcC
Confidence            3454 7777777755 566666688888654 221 11110 0   011356799999999987665 666688999998


Q ss_pred             cCCeeEEEee-cccccceecccccCCCCCCccceecce-eeEEEcCCCceEEEEecCC-----cceEEEEecceeeeecc
Q 005459          337 SGCRLMSTIR-QISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGS-----SERVLIFSFGKCCLNRG  409 (696)
Q Consensus       337 ~~~~~~~~l~-~~~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~~~-----~~~v~~~~~~~~~~s~~  409 (696)
                      .+++...... ......|.++..++++    ..++... -+..+++.+++........     ...|..+         .
T Consensus       435 ~~~~~~~~~~~~~~~~~v~~i~~d~~g----~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i---------~  501 (781)
T 3v9f_A          435 RLKKFQIIELEKNELLDVRVFYEDKNK----KIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSI---------A  501 (781)
T ss_dssp             SSCEEEECCSTTTCCCCEEEEEECTTS----EEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEE---------E
T ss_pred             CCCcEEEeccCCCCCCeEEEEEECCCC----CEEEEECCceEEEeCCCCeEEecccCcccccccceeEEE---------E
Confidence            7765432211 1112346666665555    4444222 4445555544332221111     1112111         1


Q ss_pred             CCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEec
Q 005459          410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF  488 (696)
Q Consensus       410 ~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f  488 (696)
                      .|..-.+|.-..+ ..++.+...   ...+.....+..  -.+..|.++..+++|+..+ |+.+|++ .||..+++++.|
T Consensus       502 ~d~~g~lWigt~~-~Gl~~~~~~---~~~~~~~~~~~~--l~~~~i~~i~~d~~g~lWi-~T~~Glv~~~d~~~~~~~~~  574 (781)
T 3v9f_A          502 QDSEGRFWIGTFG-GGVGIYTPD---MQLVRKFNQYEG--FCSNTINQIYRSSKGQMWL-ATGEGLVCFPSARNFDYQVF  574 (781)
T ss_dssp             ECTTCCEEEEESS-SCEEEECTT---CCEEEEECTTTT--CSCSCEEEEEECTTSCEEE-EETTEEEEESCTTTCCCEEE
T ss_pred             EcCCCCEEEEEcC-CCEEEEeCC---CCeEEEccCCCC--CCCCeeEEEEECCCCCEEE-EECCCceEEECCCCCcEEEc
Confidence            1222233432221 122222211   011222111111  1244699999999998554 4459995 999999988877


Q ss_pred             CC
Q 005459          489 GD  490 (696)
Q Consensus       489 ~~  490 (696)
                      ..
T Consensus       575 ~~  576 (781)
T 3v9f_A          575 QR  576 (781)
T ss_dssp             CG
T ss_pred             cc
Confidence            53

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.66  E-value=0.0096  Score=67.61  Aligned_cols=113  Identities=18%  Similarity=0.070  Sum_probs=68.4

Q ss_pred             cceEEEEEe-CCcEEEEeeccC-----------Cceeeeeeecce-----e-cCCCCe-EEEEEcCCCcEEEEEec-CCe
Q 005459          220 MRLLFVLYS-NGQLMSCSVSKK-----------GLKLAEFIKIDK-----E-LGSGDA-VCASIAPEQQILAVGTR-RGV  279 (696)
Q Consensus       220 ~~~~~~~s~-dG~~~~~~~~d~-----------~~~~~~~~~~~~-----~-~~~~~~-v~v~~sp~~~~la~g~~-dg~  279 (696)
                      ....+++.+ +|++++.++.+.           .+.+||..+.+-     . ..+... ..+++.++++++++|+. ++.
T Consensus       187 ~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~  266 (656)
T 1k3i_A          187 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK  266 (656)
T ss_dssp             CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred             CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCc
Confidence            344566777 999999887432           234555543311     0 111111 12677899999999984 568


Q ss_pred             EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE-cC-----CcEEEEEccCCe
Q 005459          280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KS-----RGLTVWSVSGCR  340 (696)
Q Consensus       280 v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~-~D-----g~v~vW~~~~~~  340 (696)
                      +.+||..+ .+.. .+.  ..+    ....-.+++..+||+.++.|+ .+     ..+.+||..+..
T Consensus       267 v~~yd~~t-~~W~-~~~--~~~----~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          267 TSLYDSSS-DSWI-PGP--DMQ----VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEEEEGGG-TEEE-ECC--CCS----SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eEEecCcC-Ccee-ECC--CCC----ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            99999876 3322 121  111    111113455668999999998 44     468999998765

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.63  E-value=0.0011  Score=67.62  Aligned_cols=95  Identities=9%  Similarity=0.006  Sum_probs=61.5

Q ss_pred             CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeec
Q 005459          268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ  347 (696)
Q Consensus       268 ~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~  347 (696)
                      +..|.+|+.++.+..+|.+  ++.......        +...+.++...++|+ |..|..++++..+|.. ++....+..
T Consensus       107 ~~~l~v~t~~~~l~~~d~~--g~~~~~~~~--------~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~  174 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD--GTEKWRFKT--------KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT  174 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT--SCEEEEEEC--------SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred             CCEEEEEecCCEEEEEcCC--CCEEEEEcC--------CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec
Confidence            5567778889999999876  344333333        344566677788887 5557778999999998 666655554


Q ss_pred             ccccceecccccCCCCCCccceecceeeEEEc
Q 005459          348 ISLSSISSPIVKPNQDCKYEPLMSGTSMMQWD  379 (696)
Q Consensus       348 ~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~  379 (696)
                      . ...+.++.+.+++    ..+++...+..++
T Consensus       175 ~-~~~~~~~~~d~~g----~l~v~t~~l~~~d  201 (330)
T 3hxj_A          175 N-DAITSAASIGKDG----TIYFGSDKVYAIN  201 (330)
T ss_dssp             S-SCCCSCCEECTTC----CEEEESSSEEEEC
T ss_pred             C-CCceeeeEEcCCC----EEEEEeCEEEEEC
Confidence            3 3346666665655    4444334555566

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.54  E-value=0.14  Score=61.73  Aligned_cols=118  Identities=16%  Similarity=0.181  Sum_probs=66.3

Q ss_pred             CceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCC------CcEEEEEec-CcEEEE
Q 005459           21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD------TKLIAVVTS-SLYLHI   93 (696)
Q Consensus        21 ~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPD------g~~lav~t~-dg~l~l   93 (696)
                      ...|+..+.++..++.++.+.+.++..+ .+ .+....+    .+-.+++.++.+.|.      ++.+|++.. |++++|
T Consensus       513 ~~~I~~As~n~~~vvva~g~~l~~fel~-~~-~L~~~~~----~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I  586 (1158)
T 3ei3_A          513 AKNISVASCNSSQVVVAVGRALYYLQIH-PQ-ELRQISH----TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARI  586 (1158)
T ss_dssp             CCCCCEEEECSSEEEEEETTEEEEEEEE-TT-EEEEEEE----EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEE
T ss_pred             CCEEEEEEeCCCEEEEEECCEEEEEEee-CC-ceeeecc----cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEE
Confidence            3556666666666666666677777664 22 2222222    122467889999864      469999996 999999


Q ss_pred             EEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCc
Q 005459           94 FKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGE  162 (696)
Q Consensus        94 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~  162 (696)
                      +++..-+. ...            ..+  ...  ....+..+..+ ...-++++|..||.+..+.++..
T Consensus       587 ~sL~~l~~-~~~------------~~L--~~~--~~p~si~l~~~-~~~~~L~igl~dG~l~~~~~d~~  637 (1158)
T 3ei3_A          587 LKLPSFEL-LHK------------EML--GGE--IIPRSILMTTF-ESSHYLLCALGDGALFYFGLNIE  637 (1158)
T ss_dssp             EETTTCCE-EEE------------EEC--CSS--CCEEEEEEEEE-TTEEEEEEEETTSEEEEEEECTT
T ss_pred             EECCCCCe-EEE------------EEC--CCC--CCCcEEEEEEe-CCCcEEEEEeCCCeEEEEEEcCC
Confidence            99862111 100            000  000  00001111111 11257899999999988888753

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.40  E-value=0.11  Score=51.23  Aligned_cols=94  Identities=10%  Similarity=0.039  Sum_probs=58.4

Q ss_pred             CeEEEEEcCCCcEE-EEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459          258 DAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       258 ~~v~v~~sp~~~~l-a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~  336 (696)
                      .+..++++|+++.| ++-...+.|.+++.+. ......+..         ......|+.. +++.+++.+..+.|.++|.
T Consensus       168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~---------~~~P~gi~~d-~~~lyva~~~~~~v~~~d~  236 (267)
T 1npe_A          168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEG---------LQYPFAVTSY-GKNLYYTDWKTNSVIAMDL  236 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEEC---------CCSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred             CCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecC---------CCCceEEEEe-CCEEEEEECCCCeEEEEeC
Confidence            34559999986555 5555668999999874 322222222         1223456653 4445555556689999999


Q ss_pred             cCCeeEEEeecccccceecccccCCC
Q 005459          337 SGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       337 ~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      .+++.+.++.-........+++.|++
T Consensus       237 ~~g~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          237 AISKEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             TTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             CCCCceEEEccccccccceeeecCcc
Confidence            98888888764322235566666665

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.27  E-value=0.025  Score=55.91  Aligned_cols=115  Identities=10%  Similarity=0.041  Sum_probs=72.9

Q ss_pred             EE-EEEcCCCcEEEEEec--CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459          260 VC-ASIAPEQQILAVGTR--RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       260 v~-v~~sp~~~~la~g~~--dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~  336 (696)
                      .. ++|+||+.+.++.+.  ++.|++.|..+ ++.++++....      + .....+++. +++..++.+.++.+.++|.
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t-g~v~~~i~l~~------~-~fgeGi~~~-g~~lyv~t~~~~~v~viD~   93 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQT-GKVENIHKMDD------S-YFGEGLTLL-NEKLYQVVWLKNIGFIYDR   93 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTT-CCEEEEEECCT------T-CCEEEEEEE-TTEEEEEETTCSEEEEEET
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCC-CCEEEEEecCC------C-cceEEEEEe-CCEEEEEEecCCEEEEEEC
Confidence            44 899998876666554  68999999998 77777766411      1 112344544 2345566677899999999


Q ss_pred             cCCeeEEEeecccccceecccccCCCCCCccceecc-e-eeEEEcCCCceEEEEe
Q 005459          337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-T-SMMQWDEYGYRLYAIE  389 (696)
Q Consensus       337 ~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg-~-~~~~W~~~~~~l~~~~  389 (696)
                      .+.+.+.++.-. ..  ....+++++.   ..+++- + ++.+.|+++.+.....
T Consensus        94 ~t~~v~~~i~~g-~~--~g~glt~Dg~---~l~vs~gs~~l~viD~~t~~v~~~I  142 (266)
T 2iwa_A           94 RTLSNIKNFTHQ-MK--DGWGLATDGK---ILYGSDGTSILYEIDPHTFKLIKKH  142 (266)
T ss_dssp             TTTEEEEEEECC-SS--SCCEEEECSS---SEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             CCCcEEEEEECC-CC--CeEEEEECCC---EEEEECCCCeEEEEECCCCcEEEEE
Confidence            999998888633 11  1233555551   223322 2 6777788777665544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.25  E-value=0.019  Score=56.30  Aligned_cols=110  Identities=12%  Similarity=0.052  Sum_probs=73.2

Q ss_pred             EEEcCCCcEEEEEecCC--eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCC-CeEEEEEcCCcEEEEEccC
Q 005459          262 ASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       262 v~~sp~~~~la~g~~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg-~~lasg~~Dg~v~vW~~~~  338 (696)
                      +.|+ ++.+..+.+.+|  .|+++|+++ ++.++.+..        . .........++| +...+.+.++.+.++|..+
T Consensus        48 L~~~-~~~LyestG~~g~S~v~~vD~~T-gkv~~~~~l--------~-~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t  116 (262)
T 3nol_A           48 FFYR-NGYFYESTGLNGRSSIRKVDIES-GKTLQQIEL--------G-KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN  116 (262)
T ss_dssp             EEEE-TTEEEEEEEETTEEEEEEECTTT-CCEEEEEEC--------C-TTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             EEEE-CCEEEEECCCCCCceEEEEECCC-CcEEEEEec--------C-CccceeEEEEeCCEEEEEEeeCCEEEEEECcc
Confidence            8888 778888888877  999999998 777777765        1 122222222334 4445567789999999999


Q ss_pred             CeeEEEeecccccceecccccCCCCCCccceecc-e-eeEEEcCCCceEEEEe
Q 005459          339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-T-SMMQWDEYGYRLYAIE  389 (696)
Q Consensus       339 ~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg-~-~~~~W~~~~~~l~~~~  389 (696)
                      .+.+.++.-.+.    ...+.+++   ...++|- + ++.++|+++.+.....
T Consensus       117 ~~~~~ti~~~~e----G~glt~dg---~~L~~SdGs~~i~~iDp~T~~v~~~I  162 (262)
T 3nol_A          117 LRQVRSFNYDGE----GWGLTHND---QYLIMSDGTPVLRFLDPESLTPVRTI  162 (262)
T ss_dssp             CCEEEEEECSSC----CCCEEECS---SCEEECCSSSEEEEECTTTCSEEEEE
T ss_pred             CcEEEEEECCCC----ceEEecCC---CEEEEECCCCeEEEEcCCCCeEEEEE
Confidence            999998875321    22333444   1334433 2 6777888887776654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.25  E-value=0.016  Score=66.92  Aligned_cols=109  Identities=10%  Similarity=0.020  Sum_probs=67.7

Q ss_pred             EEEE-eCCcEEEEeecc-C----Cceeeeeeec-ceecCCCCeE-E-EEEcCCCcEEEEEecC-----CeEEEEEccCCC
Q 005459          224 FVLY-SNGQLMSCSVSK-K----GLKLAEFIKI-DKELGSGDAV-C-ASIAPEQQILAVGTRR-----GVVELYDLAESA  289 (696)
Q Consensus       224 ~~~s-~dG~~~~~~~~d-~----~~~~~~~~~~-~~~~~~~~~v-~-v~~sp~~~~la~g~~d-----g~v~vw~~~~~~  289 (696)
                      ..++ |||+.++..... +    ++.+++...+ +.+..+-..+ . ++|+||++.|+....|     ..|.++++.+..
T Consensus       179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~  258 (751)
T 2xe4_A          179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQ  258 (751)
T ss_dssp             EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCG
T ss_pred             eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCc
Confidence            4578 899877765542 2    3667777666 4322211112 2 7899999999888776     257777776521


Q ss_pred             c-eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC---CcEEEEEccCC
Q 005459          290 S-LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGC  339 (696)
Q Consensus       290 ~-~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D---g~v~vW~~~~~  339 (696)
                      . ....+..       .+......+.|||||++|+....+   ..|.++|+.++
T Consensus       259 ~~~~lv~~~-------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          259 SEDVCLYEE-------HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             GGCEEEEEC-------CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             hhcEEEEec-------CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            1 1222222       123446788999999998876533   35777787764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.22  E-value=0.0079  Score=68.33  Aligned_cols=72  Identities=13%  Similarity=0.168  Sum_probs=50.3

Q ss_pred             EEEEcC-CCcEEEEEecCC-----------eEEEEEccCCCce--eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE
Q 005459          261 CASIAP-EQQILAVGTRRG-----------VVELYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW  326 (696)
Q Consensus       261 ~v~~sp-~~~~la~g~~dg-----------~v~vw~~~~~~~~--~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~  326 (696)
                      .+++.| ++++++.|+.+.           .+.+||..+ .+.  +..+..       .+.....++++.+||+.++.|+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t-~~w~~~~~~~~-------~~~~~~~~~~~~~~g~lyv~GG  261 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST-GIVSDRTVTVT-------KHDMFCPGISMDGNGQIVVTGG  261 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT-CCBCCCEEEEC-------SCCCSSCEEEECTTSCEEEECS
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCC-CcEEeCcccCC-------CCCCccccccCCCCCCEEEeCC
Confidence            466677 899999998653           688899876 332  222221       1333445678899999999998


Q ss_pred             c-CCcEEEEEccCCe
Q 005459          327 K-SRGLTVWSVSGCR  340 (696)
Q Consensus       327 ~-Dg~v~vW~~~~~~  340 (696)
                      . +..+.+||..+.+
T Consensus       262 ~~~~~v~~yd~~t~~  276 (656)
T 1k3i_A          262 NDAKKTSLYDSSSDS  276 (656)
T ss_dssp             SSTTCEEEEEGGGTE
T ss_pred             CCCCceEEecCcCCc
Confidence            5 4589999998765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.22  E-value=0.027  Score=64.02  Aligned_cols=82  Identities=18%  Similarity=0.248  Sum_probs=56.3

Q ss_pred             EEEcCCCcEEEEEecCCe-------------------EEEEEccCCCceeeEEeecc---CCCCCCCCCCeEEEEECCCC
Q 005459          262 ASIAPEQQILAVGTRRGV-------------------VELYDLAESASLIRTVSLYD---WGYSMDDTGPVSCIAWTPDN  319 (696)
Q Consensus       262 v~~sp~~~~la~g~~dg~-------------------v~vw~~~~~~~~~~~~~~~~---~~~~~~h~g~V~~l~~spdg  319 (696)
                      +++.|+..++.++..++.                   |..+|.++ ++.+-..+...   +.+.  -..+........||
T Consensus       235 ~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t-G~~~W~~~~~~~~~wd~~--~~~~~~~~d~~~~G  311 (668)
T 1kv9_A          235 MAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT-GKLAWHYQVTPGDSWDFT--ATQQITLAELNIDG  311 (668)
T ss_dssp             EEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT-CCEEEEEESSTTCCSCCC--CCSCEEEEEEEETT
T ss_pred             eEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC-CceeeEeecCCCcccccc--CCCCcEEEEeccCC
Confidence            789999999999988774                   88899887 66554444311   1110  11333333444578


Q ss_pred             C---eEEEEEcCCcEEEEEccCCeeEEEee
Q 005459          320 S---AFAVGWKSRGLTVWSVSGCRLMSTIR  346 (696)
Q Consensus       320 ~---~lasg~~Dg~v~vW~~~~~~~~~~l~  346 (696)
                      +   .++.+..+|.+.++|..+++++...+
T Consensus       312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~  341 (668)
T 1kv9_A          312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEK  341 (668)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence            6   78999999999999999998875443

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.22  E-value=0.035  Score=56.56  Aligned_cols=98  Identities=11%  Similarity=0.090  Sum_probs=57.7

Q ss_pred             EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC-----CC--------CCCCeEEEEECC-CCCeEEEE
Q 005459          260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS-----MD--------DTGPVSCIAWTP-DNSAFAVG  325 (696)
Q Consensus       260 v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-----~~--------h~g~V~~l~~sp-dg~~lasg  325 (696)
                      -.+++.++++++.++..++.|..|+.+. .. ...+.... ++.     .+        ..+.+..|++.| +|+ |..+
T Consensus        22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~-~~-~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~   97 (322)
T 2fp8_A           22 NSFTFDSTNKGFYTSVQDGRVIKYEGPN-SG-FVDFAYAS-PYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV   97 (322)
T ss_dssp             CCEECCTTCSSEEEECTTSEEEEECCTT-TC-EEEEEESC-TTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred             eEEEEcCCCCEEEEEcCCCeEEEECCCC-Cc-eEEEeccc-ccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence            3477899999788888999999998764 32 33332200 000     00        113578999998 665 5555


Q ss_pred             EcCCcEEEEEccCCeeEEEeec----ccccceecccccC-CC
Q 005459          326 WKSRGLTVWSVSGCRLMSTIRQ----ISLSSISSPIVKP-NQ  362 (696)
Q Consensus       326 ~~Dg~v~vW~~~~~~~~~~l~~----~~~~~v~~~~~sp-~~  362 (696)
                      ...+.+..+|..++.. ..+..    ........++++| ++
T Consensus        98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G  138 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG  138 (322)
T ss_dssp             ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC
T ss_pred             ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC
Confidence            5556788888776542 22221    1112355677777 66

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.19  E-value=0.022  Score=58.08  Aligned_cols=76  Identities=9%  Similarity=0.032  Sum_probs=50.0

Q ss_pred             EEEEcCCCcEEEEE-ecCCeEEEEEccCCC-ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc----------C
Q 005459          261 CASIAPEQQILAVG-TRRGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK----------S  328 (696)
Q Consensus       261 ~v~~sp~~~~la~g-~~dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~----------D  328 (696)
                      -++++|+++.|.++ ..++.|.+|+++... .....+..        ..+ ...|++.++|+..++.+.          .
T Consensus       189 gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~  259 (322)
T 2fp8_A          189 GAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVD  259 (322)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEE
T ss_pred             ceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--------CCC-CCCeEECCCCCEEEEecCcccccccCCCc
Confidence            38899999865555 567899999987421 11222222        124 678999999997777655          4


Q ss_pred             CcEEEEEccCCeeEEEee
Q 005459          329 RGLTVWSVSGCRLMSTIR  346 (696)
Q Consensus       329 g~v~vW~~~~~~~~~~l~  346 (696)
                      +.|..+|.. ++.+..+.
T Consensus       260 ~~v~~~d~~-G~~~~~~~  276 (322)
T 2fp8_A          260 PKGIKFDEF-GNILEVIP  276 (322)
T ss_dssp             EEEEEECTT-SCEEEEEE
T ss_pred             cEEEEECCC-CCEEEEEE
Confidence            668888875 44444443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.09  E-value=0.22  Score=50.83  Aligned_cols=118  Identities=8%  Similarity=0.138  Sum_probs=66.7

Q ss_pred             CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459          258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       258 ~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~  336 (696)
                      ..+. +++.|++++++++...+..+-.|-  .+.....+..       .....+..++++|+|+.+++ +.+|.+.+++.
T Consensus       163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~~-------~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~  232 (327)
T 2xbg_A          163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHNR-------TTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDP  232 (327)
T ss_dssp             CCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEEC-------CSSSCEEEEEECTTSCEEEE-ETTTEEEEEET
T ss_pred             cceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECCC-------CCCCccceeEECCCCCEEEE-eCCceEEEecC
Confidence            3455 899999999888755443333331  1233333322       14567899999999987655 45677777654


Q ss_pred             cCCeeEEEeecc---cccceecccccCCCCCCccceecce-eeEEEcCCCceEEEEe
Q 005459          337 SGCRLMSTIRQI---SLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIE  389 (696)
Q Consensus       337 ~~~~~~~~l~~~---~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~  389 (696)
                      .+++....+...   ....+.++++.|++    +.++.|. -.+.+..++++-+...
T Consensus       233 D~G~tW~~~~~~~~~~~~~~~~v~~~~~~----~~~~~g~~g~i~~S~DgG~tW~~~  285 (327)
T 2xbg_A          233 DNSENWGELLSPLRRNSVGFLDLAYRTPN----EVWLAGGAGALLCSQDGGQTWQQD  285 (327)
T ss_dssp             TEEEEECCCBCTTSSCCSCEEEEEESSSS----CEEEEESTTCEEEESSTTSSCEEC
T ss_pred             CCCCeeEeccCCcccCCcceEEEEecCCC----EEEEEeCCCeEEEeCCCCcccEEc
Confidence            434433332211   11236667777655    5555544 2245556666655544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.99  E-value=0.021  Score=65.84  Aligned_cols=92  Identities=16%  Similarity=0.177  Sum_probs=58.0

Q ss_pred             eEE-EEEc-CCCcEEEEEecC-C----eEEEEEccCCC-ceee-EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC
Q 005459          259 AVC-ASIA-PEQQILAVGTRR-G----VVELYDLAESA-SLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR  329 (696)
Q Consensus       259 ~v~-v~~s-p~~~~la~g~~d-g----~v~vw~~~~~~-~~~~-~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg  329 (696)
                      .+. .+|| |||++||.+... |    +|+++|+++ + +.+. .+..           ....++|||||+.|+....|.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~-g~~~l~~~~~~-----------~~~~~~WspDg~~l~y~~~d~  242 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISD-PSQTIADKVSG-----------TNGEIVWGPDHTSLFYVTKDE  242 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTC-TTCCCCCCEEE-----------ECSCCEECSSTTEEEEEEECT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCC-CCEeCCccccC-----------ceeeEEEecCCCEEEEEEECC
Confidence            444 8999 999999976542 2    599999987 4 3221 1111           134688999999888877652


Q ss_pred             -----cEEEEEccCCee--EEEeecccccceecccccCCC
Q 005459          330 -----GLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       330 -----~v~vW~~~~~~~--~~~l~~~~~~~v~~~~~sp~~  362 (696)
                           .|.++++.++..  ...+.+........+.++||+
T Consensus       243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg  282 (751)
T 2xe4_A          243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT  282 (751)
T ss_dssp             TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS
T ss_pred             CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC
Confidence                 577778766531  122222112234567788887

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=96.97  E-value=0.092  Score=51.65  Aligned_cols=96  Identities=9%  Similarity=-0.018  Sum_probs=54.7

Q ss_pred             CCeEEEEEcCCCc-EEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc---CCcEE
Q 005459          257 GDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK---SRGLT  332 (696)
Q Consensus       257 ~~~v~v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~---Dg~v~  332 (696)
                      ..+..++++|++. +.++-..++.|.+++.+.  .....+...       .......++++|++..|..+..   .+.|.
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g--~~~~~~~~~-------~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~  149 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG--TQRRVLFDT-------GLVNPRGIVTDPVRGNLYWTDWNRDNPKIE  149 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS-------SCSSEEEEEEETTTTEEEEEECCSSSCEEE
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCC--CCEEEEEEC-------CCCCccEEEEeeCCCEEEEEECCCCCcEEE
Confidence            3555699999754 555555678999999864  222333220       1235689999997665555443   36788


Q ss_pred             EEEccCCeeEEEeecccccceecccccCCC
Q 005459          333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      .+++.+.. ...+..........++++|++
T Consensus       150 ~~~~dg~~-~~~~~~~~~~~P~gia~d~~~  178 (267)
T 1npe_A          150 TSHMDGTN-RRILAQDNLGLPNGLTFDAFS  178 (267)
T ss_dssp             EEETTSCC-CEEEECTTCSCEEEEEEETTT
T ss_pred             EEecCCCC-cEEEEECCCCCCcEEEEcCCC
Confidence            88876543 222221112234455565543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.93  E-value=0.23  Score=56.24  Aligned_cols=72  Identities=15%  Similarity=0.088  Sum_probs=44.4

Q ss_pred             CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCC-CCeEEEEECCCCCeEEEEEc------CCcEEEEEccCCe
Q 005459          268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT-GPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCR  340 (696)
Q Consensus       268 ~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~-g~V~~l~~spdg~~lasg~~------Dg~v~vW~~~~~~  340 (696)
                      +..+.+++.||.|..+|..+ ++.+-.....+........ .++.     .+|. ++++..      +|.|..+|..+++
T Consensus       117 ~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~P~v-----~~~~-v~vg~~~~~~~~~g~v~a~D~~tG~  189 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKT-GKAIWSQQTTDPAKPYSITGAPRV-----VKGK-VIIGNGGAEYGVRGFVSAYDADTGK  189 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTT-CCEEEEEECSCTTSSCBCCSCCEE-----ETTE-EEECCBCTTTCCBCEEEEEETTTCC
T ss_pred             CCEEEEEcCCCEEEEEECCC-CCEeeeeccCCCCCcceecCCCEE-----ECCE-EEEeCCCCCcCCCCEEEEEECCCCc
Confidence            56788889999999999988 6655444431110000011 1211     1454 444432      5889999999999


Q ss_pred             eEEEee
Q 005459          341 LMSTIR  346 (696)
Q Consensus       341 ~~~~l~  346 (696)
                      ++.++.
T Consensus       190 ~~W~~~  195 (668)
T 1kv9_A          190 LAWRFY  195 (668)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            888775

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.85  E-value=0.41  Score=49.42  Aligned_cols=60  Identities=12%  Similarity=0.092  Sum_probs=39.6

Q ss_pred             eEEEEEcCCCcEEEEEecCCeEEEEEccCCCce-----eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459          259 AVCASIAPEQQILAVGTRRGVVELYDLAESASL-----IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK  327 (696)
Q Consensus       259 ~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~-----~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~  327 (696)
                      +.-++| .+|++++.....+.|...+++.....     ...+-.        -.+.+..+++.|||..+++.+.
T Consensus       270 p~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--------~~~rp~~v~~~pdG~lyv~~~~  334 (352)
T 2ism_A          270 PGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--------GFGRLREVQVGPDGALYVTTSN  334 (352)
T ss_dssp             EEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--------SSCCEEEEEECTTSCEEEEECS
T ss_pred             CcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--------cCCCeeEEEECCCCcEEEEEeC
Confidence            334777 57888777777788888877652221     111211        2367899999999988777654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.78  E-value=0.072  Score=52.58  Aligned_cols=111  Identities=13%  Similarity=0.051  Sum_probs=74.3

Q ss_pred             EEEEeCCcEEEEeec--cCCceeeeeeeccee-----cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEe
Q 005459          224 FVLYSNGQLMSCSVS--KKGLKLAEFIKIDKE-----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS  296 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~--d~~~~~~~~~~~~~~-----~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~  296 (696)
                      +.+++||+++++++.  +..+...|..+++..     ..+..+.-+++. .+++.++...++.+.++|.++ .+.+.++.
T Consensus        26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t-~~v~~~i~  103 (266)
T 2iwa_A           26 LVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRT-LSNIKNFT  103 (266)
T ss_dssp             EEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTT-TEEEEEEE
T ss_pred             EEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCC-CcEEEEEE
Confidence            446778877777653  467778887766543     122222224444 235566666789999999987 77777776


Q ss_pred             eccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459          297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR  346 (696)
Q Consensus       297 ~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~  346 (696)
                      ..    .  ..+    ...+|||+.|.++..++.|.+.|..+.+...++.
T Consensus       104 ~g----~--~~g----~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~  143 (266)
T 2iwa_A          104 HQ----M--KDG----WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHN  143 (266)
T ss_dssp             CC----S--SSC----CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             CC----C--CCe----EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            41    0  111    3356789988888778999999999988777766

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.77  E-value=0.15  Score=49.86  Aligned_cols=106  Identities=10%  Similarity=0.048  Sum_probs=73.4

Q ss_pred             eCCcEEEEeeccCCceeeeeeecceecC-CC-Ce--EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459          228 SNGQLMSCSVSKKGLKLAEFIKIDKELG-SG-DA--VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS  303 (696)
Q Consensus       228 ~dG~~~~~~~~d~~~~~~~~~~~~~~~~-~~-~~--v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~  303 (696)
                      .+++++.+++.++.++..|..+++.... -. ..  .-+++.. .++.+....++.+.+||.++ .+.+.++...     
T Consensus        63 ~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~T-l~~~~ti~~~-----  135 (268)
T 3nok_A           63 HQGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMP-PQRERTTRYS-----  135 (268)
T ss_dssp             ETTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTT-TEEEEEEECS-----
T ss_pred             ECCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCc-CcEEEEEeCC-----
Confidence            4678888888888888888877654311 11 11  1144433 35566667899999999988 7888877751     


Q ss_pred             CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459          304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR  346 (696)
Q Consensus       304 ~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~  346 (696)
                        -.|  ..+  ++||+.|..+..++.|.++|..+.+...++.
T Consensus       136 --~eG--wGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~  172 (268)
T 3nok_A          136 --GEG--WGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQ  172 (268)
T ss_dssp             --SCC--CCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             --Cce--eEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEE
Confidence              112  233  3688988888778999999999988877765

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.74  E-value=1.6  Score=52.36  Aligned_cols=106  Identities=14%  Similarity=0.122  Sum_probs=65.3

Q ss_pred             ceEEEEEeCCcEEEEeeccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459          221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW  300 (696)
Q Consensus       221 ~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~  300 (696)
                      +.++.+++.|-.++.......+..|...      +....+.++.+.  .+++++. ++.+.++.+++ +++. .....+ 
T Consensus       484 ~~ivQVt~~~Irli~~~~~~~~~~w~~p------~~~~I~~As~n~--~~vvva~-g~~l~~fel~~-~~L~-~~~~~~-  551 (1158)
T 3ei3_A          484 QQLIQITSASVRLVSQEPKALVSEWKEP------QAKNISVASCNS--SQVVVAV-GRALYYLQIHP-QELR-QISHTE-  551 (1158)
T ss_dssp             TEEEEEESSCEEEEESSSCCEEEEECCT------TCCCCCEEEECS--SEEEEEE-TTEEEEEEEET-TEEE-EEEEEE-
T ss_pred             CeEEEEecCEEEEEECCCCeEEEEEECC------CCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeC-Ccee-eecccC-
Confidence            4567777877665543222233344321      112344466664  4666664 78898888886 4332 222222 


Q ss_pred             CCCCCCCCCeEEEEECCC------CCeEEEEEc-CCcEEEEEccCCeeEE
Q 005459          301 GYSMDDTGPVSCIAWTPD------NSAFAVGWK-SRGLTVWSVSGCRLMS  343 (696)
Q Consensus       301 ~~~~~h~g~V~~l~~spd------g~~lasg~~-Dg~v~vW~~~~~~~~~  343 (696)
                           -.+.|.|+++.|.      +..+|+|.. |+++++.++.+-..+.
T Consensus       552 -----l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~  596 (1158)
T 3ei3_A          552 -----MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH  596 (1158)
T ss_dssp             -----CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             -----CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE
Confidence                 2457999999874      368999986 9999999998755443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.74  E-value=1.3  Score=51.07  Aligned_cols=211  Identities=14%  Similarity=0.075  Sum_probs=106.1

Q ss_pred             CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC--CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459          258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW--GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW  334 (696)
Q Consensus       258 ~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~--~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW  334 (696)
                      ..+. +...++|.+ =+|+.++-|..|+... . ....+.....  ....-....|.++...++|+.. .|..++++..+
T Consensus       313 ~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~  388 (781)
T 3v9f_A          313 ASARYIFQDSFNNI-WIGTWGGGINFISNAP-P-TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVF  388 (781)
T ss_dssp             SCEEEEEECSSCCE-EEEEBSSCEEEECSSC-C-SCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEE
T ss_pred             CeEEEEEEeCCCCE-EEEecCCeEEEeCCCC-C-cceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEE
Confidence            3444 777888764 4577677788888664 2 2222221000  0000123569999999988754 56767889999


Q ss_pred             EccCCeeEEEee--cccccceecccccCCCCCCccceecc--eeeEEEcCCCceEEEEecC--CcceEEEEecceeeeec
Q 005459          335 SVSGCRLMSTIR--QISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEG--SSERVLIFSFGKCCLNR  408 (696)
Q Consensus       335 ~~~~~~~~~~l~--~~~~~~v~~~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~~~~~--~~~~v~~~~~~~~~~s~  408 (696)
                      +..++.......  ......|.++..++++    ..++..  .-+..++..+++.......  ....|.++.        
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g----~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~--------  456 (781)
T 3v9f_A          389 ENGKRVAIYNKENRELLSNSVLCSLKDSEG----NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFY--------  456 (781)
T ss_dssp             ETTEEEEECC-----CCCSBEEEEEECTTS----CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEE--------
T ss_pred             ECCCCeEEEccCCCCCCCcceEEEEECCCC----CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEE--------
Confidence            987654321110  1112446666666555    555532  1445556555443222110  112232221        


Q ss_pred             cCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceEec
Q 005459          409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVF  488 (696)
Q Consensus       409 ~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~~f  488 (696)
                       .|..-.+|.-..  ..++.+.....   .+...............|++++.+++|+..+.....|+..|+..+++++.|
T Consensus       457 -~d~~g~lwigt~--~Gl~~~~~~~~---~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~  530 (781)
T 3v9f_A          457 -EDKNKKIWIGTH--AGVFVIDLASK---KVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKF  530 (781)
T ss_dssp             -ECTTSEEEEEET--TEEEEEESSSS---SCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEE
T ss_pred             -ECCCCCEEEEEC--CceEEEeCCCC---eEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEc
Confidence             122222333221  22333321110   111111000000113569999999999865544346766999999988877


Q ss_pred             CC
Q 005459          489 GD  490 (696)
Q Consensus       489 ~~  490 (696)
                      ..
T Consensus       531 ~~  532 (781)
T 3v9f_A          531 NQ  532 (781)
T ss_dssp             CT
T ss_pred             cC
Confidence            54

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.68  E-value=0.027  Score=55.19  Aligned_cols=111  Identities=12%  Similarity=0.066  Sum_probs=73.2

Q ss_pred             CcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCC
Q 005459          230 GQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD  306 (696)
Q Consensus       230 G~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h  306 (696)
                      ++++..+-.++.+.++|..+.+..   ..-...  ..+.+|++.|.....+++|.++|..+ .+.+.++....-+.   .
T Consensus       106 ~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG--wGLt~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~---~  179 (268)
T 3nok_A          106 ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG--WGLCYWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQ---P  179 (268)
T ss_dssp             SCEEEEESSSCEEEEEETTTTEEEEEEECSSCC--CCEEEETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTE---E
T ss_pred             CEEEEEEccCCEEEEEECCcCcEEEEEeCCCce--eEEecCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCc---c
Confidence            445555555666777776654433   110111  22336677777766788999999887 67777666522110   1


Q ss_pred             CCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeec
Q 005459          307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ  347 (696)
Q Consensus       307 ~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~  347 (696)
                      -..++.|.|. ||+..|..+.++.|.+-|..+++.+.++.-
T Consensus       180 v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl  219 (268)
T 3nok_A          180 VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDA  219 (268)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred             cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence            1245778887 898888888899999999999998888764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.65  E-value=0.13  Score=49.70  Aligned_cols=113  Identities=11%  Similarity=0.046  Sum_probs=72.0

Q ss_pred             EE-EEEcCCCcEEEEEecCC--eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459          260 VC-ASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV  336 (696)
Q Consensus       260 v~-v~~sp~~~~la~g~~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~  336 (696)
                      +- +.|++ +.+..+.+.+|  .|+++|+.+ ++.++.+....      +. ---.++.. +++.....+.++.+.++|.
T Consensus        23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~t-gkv~~~~~l~~------~~-fgeGi~~~-~~~ly~ltw~~~~v~v~D~   92 (243)
T 3mbr_X           23 TEGLFYLR-GHLYESTGETGRSSVRKVDLET-GRILQRAEVPP------PY-FGAGIVAW-RDRLIQLTWRNHEGFVYDL   92 (243)
T ss_dssp             EEEEEEET-TEEEEEECCTTSCEEEEEETTT-CCEEEEEECCT------TC-CEEEEEEE-TTEEEEEESSSSEEEEEET
T ss_pred             cccEEEEC-CEEEEECCCCCCceEEEEECCC-CCEEEEEeCCC------Cc-ceeEEEEe-CCEEEEEEeeCCEEEEEEC
Confidence            44 78887 67777777764  999999998 77777776511      11 11223332 3445566788999999999


Q ss_pred             cCCeeEEEeecccccceecccccCCCCCCccceecc-e-eeEEEcCCCceEEEEe
Q 005459          337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-T-SMMQWDEYGYRLYAIE  389 (696)
Q Consensus       337 ~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg-~-~~~~W~~~~~~l~~~~  389 (696)
                      .+.+++.+++-.+.    ...+.+++   ...++|- + ++.++|+++.+.....
T Consensus        93 ~tl~~~~ti~~~~~----Gwglt~dg---~~L~vSdgs~~l~~iDp~t~~~~~~I  140 (243)
T 3mbr_X           93 ATLTPRARFRYPGE----GWALTSDD---SHLYMSDGTAVIRKLDPDTLQQVGSI  140 (243)
T ss_dssp             TTTEEEEEEECSSC----CCEEEECS---SCEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             CcCcEEEEEeCCCC----ceEEeeCC---CEEEEECCCCeEEEEeCCCCeEEEEE
Confidence            99999999875422    12333444   1333332 2 7777888887766554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.62  E-value=0.81  Score=47.19  Aligned_cols=61  Identities=11%  Similarity=0.071  Sum_probs=40.8

Q ss_pred             eEEEEEc-------CCCcEEEEEecCCeEEEEEccCCCcee--eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE
Q 005459          259 AVCASIA-------PEQQILAVGTRRGVVELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW  326 (696)
Q Consensus       259 ~v~v~~s-------p~~~~la~g~~dg~v~vw~~~~~~~~~--~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~  326 (696)
                      +.-++|.       .++++++.....+.|...+++..++..  ..+..       +-.+.+..+++.|||...++.+
T Consensus       261 p~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~-------~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          261 PSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK-------NVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT-------TTSCCEEEEEECTTSCEEEEEC
T ss_pred             CcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc-------CCCCCeeEEEECCCCcEEEEEe
Confidence            3338883       678888887778888888887522322  11111       1245789999999998777765

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.59  E-value=0.06  Score=52.19  Aligned_cols=147  Identities=11%  Similarity=0.183  Sum_probs=88.3

Q ss_pred             CCcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCC
Q 005459          229 NGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD  305 (696)
Q Consensus       229 dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~  305 (696)
                      +++++..+-.++.+.++|..+.+..   ......  ..+.++++.|.++..+++|.++|..+ .+.++++....-+.   
T Consensus        74 ~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G--wglt~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~---  147 (243)
T 3mbr_X           74 RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG--WALTSDDSHLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGR---  147 (243)
T ss_dssp             TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC--CEEEECSSCEEEECSSSEEEEECTTT-CCEEEEEECEETTE---
T ss_pred             CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc--eEEeeCCCEEEEECCCCeEEEEeCCC-CeEEEEEEEccCCc---
Confidence            3556665556677777776655433   111111  23335666666666688999999887 67777666522110   


Q ss_pred             CCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceE
Q 005459          306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRL  385 (696)
Q Consensus       306 h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l  385 (696)
                      .-..++.|.|. +|+..|..|.+..|.+-|..+++.+..+.-.+..        |........-...-.-+.|++++.++
T Consensus       148 ~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~--------~~~~~~~~~~~~vlNGIA~d~~~~~l  218 (243)
T 3mbr_X          148 PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALV--------PDADALTDSTNDVLNGIAFDAEHDRL  218 (243)
T ss_dssp             ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGS--------TTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred             ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCc--------cccccccCCcCCceEEEEEcCCCCEE
Confidence            01346677776 8888888888999999999999988887643211        11000000000112557788888888


Q ss_pred             EEEec
Q 005459          386 YAIEE  390 (696)
Q Consensus       386 ~~~~~  390 (696)
                      +.+.+
T Consensus       219 fVTGK  223 (243)
T 3mbr_X          219 FVTGK  223 (243)
T ss_dssp             EEEET
T ss_pred             EEECC
Confidence            87764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.54  E-value=0.49  Score=47.48  Aligned_cols=71  Identities=18%  Similarity=0.266  Sum_probs=48.8

Q ss_pred             EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc--EEEEEcc
Q 005459          260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG--LTVWSVS  337 (696)
Q Consensus       260 v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~--v~vW~~~  337 (696)
                      -.++++++++++++-..++.|..||.+.  +....+..         .+....|+++|||+.+++....+.  |..++..
T Consensus        35 egia~~~~g~lyv~d~~~~~I~~~d~~g--~~~~~~~~---------~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~  103 (306)
T 2p4o_A           35 ENLASAPDGTIFVTNHEVGEIVSITPDG--NQQIHATV---------EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS  103 (306)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTC--CEEEEEEC---------SSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred             ceEEECCCCCEEEEeCCCCeEEEECCCC--ceEEEEeC---------CCCceeEEEcCCCcEEEEeccCCcceEEEEcCC
Confidence            3488999999888877889998888653  33333332         346889999999997666554334  5556666


Q ss_pred             CCee
Q 005459          338 GCRL  341 (696)
Q Consensus       338 ~~~~  341 (696)
                      +++.
T Consensus       104 ~g~~  107 (306)
T 2p4o_A          104 DGTV  107 (306)
T ss_dssp             TSCE
T ss_pred             CCeE
Confidence            6654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.44  E-value=0.84  Score=50.72  Aligned_cols=78  Identities=14%  Similarity=0.086  Sum_probs=47.0

Q ss_pred             EEEcCCCcE----EEEEecCCeEEEEEccCCCceeeEEeeccC--CCCCCCCCCeEEEEECCCCCeEEEEE------cCC
Q 005459          262 ASIAPEQQI----LAVGTRRGVVELYDLAESASLIRTVSLYDW--GYSMDDTGPVSCIAWTPDNSAFAVGW------KSR  329 (696)
Q Consensus       262 v~~sp~~~~----la~g~~dg~v~vw~~~~~~~~~~~~~~~~~--~~~~~h~g~V~~l~~spdg~~lasg~------~Dg  329 (696)
                      ++++|.+..    |.+++.|+.+..+|..+ ++.+-.......  ++. ....++.     .+|.. +++.      .++
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~T-G~~~W~~~~~~~~~~~~-~~ssP~v-----~~g~V-~vg~~g~e~g~~g  182 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAET-GETVWKVENSDIKVGST-LTIAPYV-----VKDKV-IIGSSGAELGVRG  182 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTT-CCEEEEEECCCGGGTCB-CCSCCEE-----ETTEE-EECCBCGGGTCCC
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCC-CCEEEeecCCCCCccce-eecCCEE-----ECCEE-EEEecccccCCCC
Confidence            566554444    78888999999999988 655443332110  000 0111211     15544 4444      378


Q ss_pred             cEEEEEccCCeeEEEeec
Q 005459          330 GLTVWSVSGCRLMSTIRQ  347 (696)
Q Consensus       330 ~v~vW~~~~~~~~~~l~~  347 (696)
                      .|.-+|..+++++.++..
T Consensus       183 ~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          183 YLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             EEEEEETTTCCEEEEEES
T ss_pred             eEEEEECCCCcEEEEEcC
Confidence            999999999988877664

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.39  E-value=0.037  Score=54.19  Aligned_cols=145  Identities=12%  Similarity=0.207  Sum_probs=86.4

Q ss_pred             CcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCC
Q 005459          230 GQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD  306 (696)
Q Consensus       230 G~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h  306 (696)
                      ++++..+-.++.+.++|..+.+..   .-....  ..+++|++.|.....+++|.++|..+ .+.+.++....-+.   .
T Consensus        97 ~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~---~  170 (262)
T 3nol_A           97 DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPES-LTPVRTITVTAHGE---E  170 (262)
T ss_dssp             TEEEEEESSSSEEEEEETTTCCEEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTT-CSEEEEEECEETTE---E
T ss_pred             CEEEEEEeeCCEEEEEECccCcEEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCC-CeEEEEEEeccCCc---c
Confidence            345555555666777776654433   100111  23346677666666678899999887 66666665421000   0


Q ss_pred             CCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccc-eecccccCCCCCCccceecceeeEEEcCCCceE
Q 005459          307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS-ISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRL  385 (696)
Q Consensus       307 ~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~-v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l  385 (696)
                      -..++.+.|. ||+..|..+.++.|.+-|..+++.+.++.-.+... ...  -.+.        ...-.-+.|++++.++
T Consensus       171 ~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~--~~~~--------~~vlNGIA~dp~~~~l  239 (262)
T 3nol_A          171 LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGP--LPSP--------IDVLNGIAWDKEHHRL  239 (262)
T ss_dssp             CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCS--CCSS--------CCCEEEEEEETTTTEE
T ss_pred             ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccccc--ccCc--------CCceEEEEEcCCCCEE
Confidence            1335668887 89888888889999999999999988876432110 000  0000        0112556778877777


Q ss_pred             EEEecC
Q 005459          386 YAIEEG  391 (696)
Q Consensus       386 ~~~~~~  391 (696)
                      +.+.+.
T Consensus       240 fVTGK~  245 (262)
T 3nol_A          240 FVTGKL  245 (262)
T ss_dssp             EEEETT
T ss_pred             EEECCC
Confidence            777643

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.39  E-value=0.048  Score=56.93  Aligned_cols=123  Identities=12%  Similarity=0.144  Sum_probs=74.3

Q ss_pred             eEEEEEeCCcEEEEEccCeEEEeecCCce-----------eeEEEeecChHHHhhcccccEEEEcCCC---cEEEEEecC
Q 005459           23 QIIYFKVNNGLLLIASPCHIELWSSSQHK-----------VRLGKYKRDSESVQREGENLQAVWSPDT---KLIAVVTSS   88 (696)
Q Consensus        23 ~~v~fs~dg~lla~~~~~~v~iW~~~~~~-----------~~l~~~~r~~~sl~~~G~~~~v~wsPDg---~~lav~t~d   88 (696)
                      .-+..||+|+|||..++.+|.|-.+.-+.           .+...+.-.........++..+.|.|-|   ..|++.|+|
T Consensus        69 ~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD  148 (452)
T 3pbp_A           69 FHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKED  148 (452)
T ss_dssp             CEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETT
T ss_pred             eEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecC
Confidence            33679999999999999999998873111           1111222111111124678999999965   589999999


Q ss_pred             cEEEEEEEEecCcc-cccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEe--cCCcEEEE
Q 005459           89 LYLHIFKVQITEKS-IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL--SDGSLYSI  157 (696)
Q Consensus        89 g~l~l~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t--~~g~i~~~  157 (696)
                      +.||+||+..+... ......            ...+.......+..-.||..++-.|++.+  .+|.|+.+
T Consensus       149 ~~Ir~yDl~~s~~~P~~L~k~------------~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          149 DTITMFDILNSQEKPIVLNKP------------NNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             SCEEEEETTCTTSCCEEESCC------------CSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             CEEEEEEcccCCCCCcchhcc------------ccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            99999999752211 000000            00011111113333446777777788855  88999876

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.34  E-value=1.5  Score=48.65  Aligned_cols=76  Identities=12%  Similarity=0.032  Sum_probs=43.6

Q ss_pred             CcEEEEEecCCeEEEEEccCCCceeeEEeeccC--CCCCCCCCCeEEEEECCCCC-eEEEEE------cCCcEEEEEccC
Q 005459          268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDW--GYSMDDTGPVSCIAWTPDNS-AFAVGW------KSRGLTVWSVSG  338 (696)
Q Consensus       268 ~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~--~~~~~h~g~V~~l~~spdg~-~lasg~------~Dg~v~vW~~~~  338 (696)
                      +..+.+++.|+.|.-+|.++ ++.+-.......  .+. ....++.. .=..+|+ .++++.      .++.|.-+|..+
T Consensus       117 ~~~v~~~t~dg~l~AlD~~T-G~~~W~~~~~~~~~~~~-~~~sP~v~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t  193 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNT-GKVVWKKKFADHGAGYT-MTGAPTIV-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT  193 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSS-CCEEEEEECSCGGGTCB-CCSCCEEE-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred             CCEEEEEeCCCEEEEEECCC-CCEEeeecCCCCCcCcc-cccCCEEe-CCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence            55677888999999999988 655443333110  000 01122211 0001233 555554      378899999988


Q ss_pred             CeeEEEee
Q 005459          339 CRLMSTIR  346 (696)
Q Consensus       339 ~~~~~~l~  346 (696)
                      ++++.+..
T Consensus       194 G~~~W~~~  201 (582)
T 1flg_A          194 GEEIWMRP  201 (582)
T ss_dssp             CCEEEEEE
T ss_pred             CCEEeecC
Confidence            88777654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.24  E-value=0.58  Score=51.79  Aligned_cols=73  Identities=10%  Similarity=0.080  Sum_probs=44.6

Q ss_pred             CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC-CCCCCCeEEEEECCCCCeEEEEEc------CCcEEEEEccCCe
Q 005459          268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS-MDDTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCR  340 (696)
Q Consensus       268 ~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-~~h~g~V~~l~~spdg~~lasg~~------Dg~v~vW~~~~~~  340 (696)
                      +..+.+++.|+.+..+|..+ ++.+-.......... .....++.     .+|. ++++..      ++.|..+|..+++
T Consensus       115 ~~~v~v~~~dg~l~alD~~t-G~~~W~~~~~~~~~~~~~~~~P~v-----~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~  187 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKT-GKINWEVEVCDPKVGSTLTQAPFV-----AKDT-VLMGCSGAELGVRGAVNAFDLKTGE  187 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTT-CCEEEEEECCCGGGTCBCCSCCEE-----ETTE-EEEECBCGGGTCCCEEEEEETTTCC
T ss_pred             CCEEEEEeCCCEEEEEECCC-CCEEEEecCCCCCccceeccCCEE-----ECCE-EEEEecCCccCCCCEEEEEECCCCc
Confidence            56778888999999999988 665544433110000 00111211     1454 455544      7899999999998


Q ss_pred             eEEEeec
Q 005459          341 LMSTIRQ  347 (696)
Q Consensus       341 ~~~~l~~  347 (696)
                      .+.++..
T Consensus       188 ~~W~~~~  194 (571)
T 2ad6_A          188 LKWRAFA  194 (571)
T ss_dssp             EEEEEES
T ss_pred             EEEEEcc
Confidence            8877654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.10  E-value=1.1  Score=44.72  Aligned_cols=108  Identities=9%  Similarity=-0.004  Sum_probs=60.8

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecce--ecCCCCeEEEEEcCCCcEEEEEecCC--eEEEEEccCCCceeeEEeecc
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAVCASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~v~v~~sp~~~~la~g~~dg--~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      +++.++|+++++....+.+..++......  +.....+..+++.++++++++.....  .|..++..+ ++.. .+... 
T Consensus        37 ia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~-g~~~-~~~~~-  113 (306)
T 2p4o_A           37 LASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GTVE-TLLTL-  113 (306)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SCEE-EEEEC-
T ss_pred             EEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC-CeEE-EEEeC-
Confidence            55677888777665666666665432111  11112333499999999776654433  355566554 4433 22221 


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC  339 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~  339 (696)
                       +    .......++..+++..+++-..++.|.++|..++
T Consensus       114 -~----~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A          114 -P----DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             -T----TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             -C----CccccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence             0    1223355566677766666556788888887654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.04  E-value=1.1  Score=49.65  Aligned_cols=83  Identities=18%  Similarity=0.123  Sum_probs=54.1

Q ss_pred             EEEcCCCcEEEEEec--------------------C----CeEEEEEccCCCceeeEEeecc---CCCCCCCCCCeEEEE
Q 005459          262 ASIAPEQQILAVGTR--------------------R----GVVELYDLAESASLIRTVSLYD---WGYSMDDTGPVSCIA  314 (696)
Q Consensus       262 v~~sp~~~~la~g~~--------------------d----g~v~vw~~~~~~~~~~~~~~~~---~~~~~~h~g~V~~l~  314 (696)
                      .++.|+..++.++..                    |    +.|..+|.++ ++.+-.++...   +.+.. ...++. +.
T Consensus       251 ~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T-G~~~W~~q~~~~d~wd~~~-~~~p~l-~~  327 (582)
T 1flg_A          251 ASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS-GEVKWFYQHTPNDAWDFSG-NNELVL-FD  327 (582)
T ss_dssp             CEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT-CCEEEEEESSTTCCSCCCC-CCCCEE-EE
T ss_pred             ceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC-CCEEEEEeCCCCCcccccC-CCCcEE-Ee
Confidence            678888888887763                    2    6888999887 66554443310   11000 122333 22


Q ss_pred             EC-CCCC---eEEEEEcCCcEEEEEccCCeeEEEeec
Q 005459          315 WT-PDNS---AFAVGWKSRGLTVWSVSGCRLMSTIRQ  347 (696)
Q Consensus       315 ~s-pdg~---~lasg~~Dg~v~vW~~~~~~~~~~l~~  347 (696)
                      .. .||+   .++.++.+|.+.++|..+++++...+.
T Consensus       328 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          328 YKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             EECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             eecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence            22 5785   788899999999999999988876654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=95.98  E-value=1.1  Score=45.89  Aligned_cols=95  Identities=11%  Similarity=0.088  Sum_probs=54.2

Q ss_pred             CeEEEEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEEcC-CcEEEE
Q 005459          258 DAVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKS-RGLTVW  334 (696)
Q Consensus       258 ~~v~v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~~D-g~v~vW  334 (696)
                      .+.-+++.+. +++..+-...+.|.+.+.+.  .....+..       ..-.....|++.|++. .+.+-+.+ +.|...
T Consensus       117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~-------~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~  187 (349)
T 3v64_C          117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLW-------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS  187 (349)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEC-------TTCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             CccEEEEecCCCeEEEEcCCCCeEEEEcCCC--CceEEEEe-------CCCCCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence            3445888875 55556666678999998874  33333322       0234568999999554 45555555 678888


Q ss_pred             EccCCeeEEEeecccccceecccccCCC
Q 005459          335 SVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       335 ~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      ++.+.... .+...+...-+.++++|++
T Consensus       188 ~~dG~~~~-~~~~~~~~~PnGla~d~~~  214 (349)
T 3v64_C          188 SMDGSGRR-IIADTHLFWPNGLTIDYAG  214 (349)
T ss_dssp             ETTSCSCE-ESCCSSCSCEEEEEEETTT
T ss_pred             eCCCCCcE-EEEECCCCCcceEEEeCCC
Confidence            87664322 2211112234455565543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.97  E-value=1.1  Score=49.47  Aligned_cols=38  Identities=16%  Similarity=0.197  Sum_probs=26.8

Q ss_pred             CeEEEEEcCCCc---EEEEEecCCeEEEEEccCCCceeeEEe
Q 005459          258 DAVCASIAPEQQ---ILAVGTRRGVVELYDLAESASLIRTVS  296 (696)
Q Consensus       258 ~~v~v~~sp~~~---~la~g~~dg~v~vw~~~~~~~~~~~~~  296 (696)
                      .++.+...++|+   +++.++.+|.+.+.|..+ ++.+-...
T Consensus       303 ~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~~w~~~  343 (571)
T 2ad6_A          303 QMVLTDQPVNGKMTPLLSHIDRNGILYTLNREN-GNLIVAEK  343 (571)
T ss_dssp             CCEEEEEEETTEEEEEEEEECTTSEEEEEETTT-CCEEEEEE
T ss_pred             CCEEEecccCCcEEEEEEEeCCCcEEEEEECCC-CCEEeeec
Confidence            334445456784   688899999999999887 66554443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=95.76  E-value=2  Score=43.53  Aligned_cols=91  Identities=11%  Similarity=0.161  Sum_probs=50.7

Q ss_pred             EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe
Q 005459          261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR  340 (696)
Q Consensus       261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~  340 (696)
                      .+.+.++++++|++. +|.  +|...+.++.......       .+.+.+..+++.|++..++++...+.++-+|- ++.
T Consensus       126 ~i~~~~~~~~~~~~~-~g~--v~~S~DgG~tW~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~  194 (327)
T 2xbg_A          126 LIKALGNGSAEMITN-VGA--IYRTKDSGKNWQALVQ-------EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQT  194 (327)
T ss_dssp             EEEEEETTEEEEEET-TCC--EEEESSTTSSEEEEEC-------SCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCS
T ss_pred             EEEEECCCCEEEEeC-Ccc--EEEEcCCCCCCEEeec-------CCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCC
Confidence            377777788887764 554  3444443544444432       15567999999999988877654333333332 122


Q ss_pred             eEEEeecccccceecccccCCC
Q 005459          341 LMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       341 ~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      ....+.......+..+++.|++
T Consensus       195 tW~~~~~~~~~~~~~~~~~~~g  216 (327)
T 2xbg_A          195 AWEPHNRTTSRRLHNMGFTPDG  216 (327)
T ss_dssp             SCEEEECCSSSCEEEEEECTTS
T ss_pred             ceeECCCCCCCccceeEECCCC
Confidence            2222221113346666777765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=95.58  E-value=1.3  Score=46.07  Aligned_cols=92  Identities=10%  Similarity=0.069  Sum_probs=52.2

Q ss_pred             EEEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEE-EEEcC-CcEEEEEcc
Q 005459          261 CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKS-RGLTVWSVS  337 (696)
Q Consensus       261 ~v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~la-sg~~D-g~v~vW~~~  337 (696)
                      -+++.+. +++..+-...+.|.+.+++.  .....+..       ........|++.|++..|. +-+.+ +.|...++.
T Consensus       163 glavd~~~g~lY~~d~~~~~I~~~~~dg--~~~~~l~~-------~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d  233 (386)
T 3v65_B          163 GLAVDWVHDKLYWTDSGTSRIEVANLDG--AHRKVLLW-------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD  233 (386)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEECBTTS--CSCEEEEC-------SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred             EEEEEeCCCeEEEEcCCCCeEEEEeCCC--CceEEeec-------CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC
Confidence            3788875 45555656678888888764  33333322       0234578999999665554 44444 678777776


Q ss_pred             CCeeEEEeecccccceecccccCCC
Q 005459          338 GCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       338 ~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      +........ .+...-+.++++|++
T Consensus       234 G~~~~~~~~-~~~~~PnGlavd~~~  257 (386)
T 3v65_B          234 GSGRRIIAD-THLFWPNGLTIDYAG  257 (386)
T ss_dssp             SCSCEEEEC-SSCSCEEEEEEEGGG
T ss_pred             CCCcEEEEE-CCCCCeeeEEEeCCC
Confidence            653222221 112234556666543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=94.68  E-value=4.4  Score=42.04  Aligned_cols=97  Identities=10%  Similarity=0.049  Sum_probs=55.4

Q ss_pred             CCCeEEEEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCe-EEEEEcCCcEEE
Q 005459          256 SGDAVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA-FAVGWKSRGLTV  333 (696)
Q Consensus       256 ~~~~v~v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~-lasg~~Dg~v~v  333 (696)
                      ...+.-++|+++ +.++.+-..++.|..++.+. ......+..        .......|++.+.+.. .++-...+.|.+
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g-~~~~~~~~~--------~~~~p~glavd~~~g~lY~~d~~~~~I~~  185 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNG-SNVEEVVST--------GLESPGGLAVDWVHDKLYWTDSGTSRIEV  185 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CCEEEEECS--------SCSCCCCEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCC-CCcEEEEeC--------CCCCccEEEEEeCCCeEEEEcCCCCeEEE
Confidence            345566999975 55555656778899898875 332222222        2234567888885544 455555678888


Q ss_pred             EEccCCeeEEEeecccccceecccccCCC
Q 005459          334 WSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       334 W~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      .++.+......+. .+......++++|.+
T Consensus       186 ~~~dg~~~~~l~~-~~l~~P~giavdp~~  213 (386)
T 3v65_B          186 ANLDGAHRKVLLW-QSLEKPRAIALHPME  213 (386)
T ss_dssp             CBTTSCSCEEEEC-SSCSCEEEEEEETTT
T ss_pred             EeCCCCceEEeec-CCCCCCcEEEEEcCC
Confidence            8887654322222 112334555565543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=94.56  E-value=5.6  Score=41.99  Aligned_cols=113  Identities=16%  Similarity=0.219  Sum_probs=64.3

Q ss_pred             CCeEEEEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CC----c
Q 005459          257 GDAVCASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SR----G  330 (696)
Q Consensus       257 ~~~v~v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg----~  330 (696)
                      ..+..++++| +...|.+....+.|+.+|.+. . .+..+..        .......|+|+++|+.|.++.. ++    .
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~-~-~v~~~~~--------~~~~P~~ia~d~~G~~lyvad~~~~~~~~~  206 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEK-E-YVSTVYS--------GLSKVRTICWTHEADSMIITNDQNNNDRPN  206 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBTEEEEEEETTT-T-EEEEEEC--------CCSCEEEEEECTTSSEEEEEECCSCTTSEE
T ss_pred             CCCCEEEECCCCCCeEEEEeCCCcEEEEECCC-C-EEEEEec--------CCCCcceEEEeCCCCEEEEEeCCCCcccce
Confidence            4556689998 344455555558888888865 3 3333433        3456789999999996665544 22    2


Q ss_pred             EEEEEccCCee-EEEeecccccceecccccC-CCCCCccceecc---eeeEEEcCCCceE
Q 005459          331 LTVWSVSGCRL-MSTIRQISLSSISSPIVKP-NQDCKYEPLMSG---TSMMQWDEYGYRL  385 (696)
Q Consensus       331 v~vW~~~~~~~-~~~l~~~~~~~v~~~~~sp-~~~~~~~~l~sg---~~~~~W~~~~~~l  385 (696)
                      +.+.+..+... ...+..  ......++++| ++    ..+++-   ..+..+++++...
T Consensus       207 v~~~~~~g~~~~~~~l~~--~~~p~giavdp~~g----~lyv~d~~~~~V~~~~~~~~~~  260 (430)
T 3tc9_A          207 NYILTRESGFKVITELTK--GQNCNGAETHPING----ELYFNSWNAGQVFRYDFTTQET  260 (430)
T ss_dssp             EEEEEGGGTSCSEEEEEE--CSSCCCEEECTTTC----CEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEeCCCceeeeeeecc--CCCceEEEEeCCCC----EEEEEECCCCEEEEEECCCCcE
Confidence            33344333211 122322  12345677888 44    444432   2677777776654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=94.50  E-value=5.7  Score=41.89  Aligned_cols=94  Identities=4%  Similarity=0.011  Sum_probs=55.7

Q ss_pred             CeEEEEEcCCCcEEEEEec-CC----eEEEEEccCCCcee--eEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCC
Q 005459          258 DAVCASIAPEQQILAVGTR-RG----VVELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSR  329 (696)
Q Consensus       258 ~~v~v~~sp~~~~la~g~~-dg----~v~vw~~~~~~~~~--~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg  329 (696)
                      .+..++|+++++.|.++.. ++    .+.+++.+  +...  ..+..         ......++++| +|..+++-..++
T Consensus       180 ~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~--g~~~~~~~l~~---------~~~p~giavdp~~g~lyv~d~~~~  248 (430)
T 3tc9_A          180 KVRTICWTHEADSMIITNDQNNNDRPNNYILTRE--SGFKVITELTK---------GQNCNGAETHPINGELYFNSWNAG  248 (430)
T ss_dssp             CEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG--GTSCSEEEEEE---------CSSCCCEEECTTTCCEEEEETTTT
T ss_pred             CcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC--Cceeeeeeecc---------CCCceEEEEeCCCCEEEEEECCCC
Confidence            3445999999995555443 22    33334432  3222  23332         12346788999 788777777788


Q ss_pred             cEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459          330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       330 ~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      .|..++..++.............-..++|+|++
T Consensus       249 ~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG  281 (430)
T 3tc9_A          249 QVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSG  281 (430)
T ss_dssp             EEEEEETTTTEEEEEEECSSSSCCEEEEECTTS
T ss_pred             EEEEEECCCCcEEEEEEcCCCCcceeEEEcCCC
Confidence            999999987764222221111234567888887

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.97  E-value=6.2  Score=40.26  Aligned_cols=56  Identities=14%  Similarity=0.082  Sum_probs=36.0

Q ss_pred             EEEcCCCcEEEEEecCCeEEEEEccCCCce----eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459          262 ASIAPEQQILAVGTRRGVVELYDLAESASL----IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK  327 (696)
Q Consensus       262 v~~sp~~~~la~g~~dg~v~vw~~~~~~~~----~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~  327 (696)
                      ++|. ++.++......+.|....++. ...    ...+.+        ..+.+..|+..|||.++++-..
T Consensus       268 ~~~~-~g~~~~~~l~~~~l~~v~~~~-~~~~~~~e~~l~~--------~~gR~~dv~~~pDG~lyv~td~  327 (347)
T 3das_A          268 IAYA-EGSVWMAGLRGERLWRIPLKG-TAAAADPQAFLEG--------EYGRLRTVAPAGGDKLWLVTSN  327 (347)
T ss_dssp             EEEE-TTEEEEEESTTCSEEEEEEET-TEESSCCEEESTT--------TSSCEEEEEEEETTEEEEEECT
T ss_pred             eEEE-cCceeeccccCCEEEEEEecC-CceecceEEeecC--------CCCCccEEEECCCCcEEEEEcC
Confidence            6766 467777777777766666654 221    111122        4578999999999987776543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.47  E-value=7.7  Score=39.70  Aligned_cols=67  Identities=12%  Similarity=0.202  Sum_probs=44.5

Q ss_pred             EEEcCCCcEEEEEe-cCCeEEEEEccCCCce--eeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcC-CcEEEEEc
Q 005459          262 ASIAPEQQILAVGT-RRGVVELYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS-RGLTVWSV  336 (696)
Q Consensus       262 v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~--~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~D-g~v~vW~~  336 (696)
                      ++||||++.|.++. ..+.|..|+++..+..  .+.+ .        -.+..-.++..+ +|+..+++..+ +.|..|+.
T Consensus       226 ia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~--------~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          226 INISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-S--------FDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-E--------CSSEEEEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred             ceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-e--------CCCCCceEEEeCCCCcEEEEecCCceEEEEECC
Confidence            89999998776664 5789999999753332  2233 2        245677899999 59988766543 23444454


Q ss_pred             c
Q 005459          337 S  337 (696)
Q Consensus       337 ~  337 (696)
                      .
T Consensus       297 ~  297 (355)
T 3sre_A          297 E  297 (355)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=93.26  E-value=6.4  Score=38.19  Aligned_cols=80  Identities=10%  Similarity=0.126  Sum_probs=54.0

Q ss_pred             CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC-CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459          257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY-SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS  335 (696)
Q Consensus       257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~-~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~  335 (696)
                      .+.=-+++.+++.++++--.++.+.++++...+. +........+. ..........|+|+|+++.|.++.+.....+|.
T Consensus        70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~-i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~  148 (255)
T 3qqz_A           70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSE-VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYK  148 (255)
T ss_dssp             SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC-EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEE
T ss_pred             CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe-eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEE
Confidence            3444488889998766655678999999887333 22222222222 122456689999999998888888877777777


Q ss_pred             cc
Q 005459          336 VS  337 (696)
Q Consensus       336 ~~  337 (696)
                      +.
T Consensus       149 ~~  150 (255)
T 3qqz_A          149 VN  150 (255)
T ss_dssp             EE
T ss_pred             Ec
Confidence            65

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=93.05  E-value=6.9  Score=37.97  Aligned_cols=219  Identities=9%  Similarity=0.027  Sum_probs=114.7

Q ss_pred             CCceEEEEEeCCc-EEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEE
Q 005459           20 SSQQIIYFKVNNG-LLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQ   97 (696)
Q Consensus        20 ~~~~~v~fs~dg~-lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~   97 (696)
                      +..+-++++|++. |+|+. .+..|..-|..  +..+....     +...+..-.+++.+|+.++++.-.++.+.+|++.
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~-----l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIP-----LDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEE-----CSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEe-----cCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            3456689999865 55544 44577777773  33333321     2233556679999999876666677788888886


Q ss_pred             ecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCc
Q 005459           98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS  177 (696)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~  177 (696)
                      ......          .+....+  ............-.++.+.+++++++.......++.|++..... .         
T Consensus       100 ~~~~i~----------~~~~~~~--~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~-~---------  157 (255)
T 3qqz_A          100 PNSEVK----------ILKKIKI--PLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSN-E---------  157 (255)
T ss_dssp             TTCCEE----------EEEEEEC--CCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSS-C---------
T ss_pred             CCCeee----------eeeeecc--ccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCC-c---------
Confidence            433100          0000000  00000011112223556667788888776665666666421110 0         


Q ss_pred             ccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCce-eeeeeecce-e-c
Q 005459          178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDK-E-L  254 (696)
Q Consensus       178 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~-~~~~~~~~~-~-~  254 (696)
                       +.. ..  +.  ...      ....    ...+..++|+|..+.+.+++..++.++.-..++.+. .+.+..+.. + .
T Consensus       158 -l~i-~~--~~--~~~------~~~~----~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~  221 (255)
T 3qqz_A          158 -LHI-SK--DK--ALQ------RQFT----LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSH  221 (255)
T ss_dssp             -CEE-EE--CH--HHH------HTCC----SSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSS
T ss_pred             -eee-ec--ch--hhc------cccc----cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCccc
Confidence             000 00  00  000      0000    112456778888888888888888877665555533 333332110 0 1


Q ss_pred             CCCCeEEEEEcCCCcEEEEEecCCeEEEEE
Q 005459          255 GSGDAVCASIAPEQQILAVGTRRGVVELYD  284 (696)
Q Consensus       255 ~~~~~v~v~~sp~~~~la~g~~dg~v~vw~  284 (696)
                      ....+=-++|.++|++.++ ++-+.+.+|.
T Consensus       222 ~~~qpEGia~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          222 NIKQAEGVAMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             CCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred             ccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence            1223334999999997766 6666555554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=92.88  E-value=9.2  Score=38.93  Aligned_cols=96  Identities=10%  Similarity=0.043  Sum_probs=55.6

Q ss_pred             CCCeEEEEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEEcCCcEEE
Q 005459          256 SGDAVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTV  333 (696)
Q Consensus       256 ~~~~v~v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~~Dg~v~v  333 (696)
                      ...+..++|+++ +.+..+-..++.|..++.+. ......+..        .......+++.+.+. ...+-...+.|.+
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g-~~~~~~~~~--------~~~~p~glavd~~~g~ly~~d~~~~~I~~  142 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNG-SNVEEVVST--------GLESPGGLAVDWVHDKLYWTDSGTSRIEV  142 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECS--------SCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCC-CCceEEEeC--------CCCCccEEEEecCCCeEEEEcCCCCeEEE
Confidence            345566999975 45555556678898888875 332222222        223457889988554 4455556678999


Q ss_pred             EEccCCeeEEEeecccccceecccccCC
Q 005459          334 WSVSGCRLMSTIRQISLSSISSPIVKPN  361 (696)
Q Consensus       334 W~~~~~~~~~~l~~~~~~~v~~~~~sp~  361 (696)
                      .++.+......+... ......++++|.
T Consensus       143 ~~~dG~~~~~l~~~~-l~~P~~iavdp~  169 (349)
T 3v64_C          143 ANLDGAHRKVLLWQS-LEKPRAIALHPM  169 (349)
T ss_dssp             EETTSCSCEEEECTT-CSCEEEEEEETT
T ss_pred             EcCCCCceEEEEeCC-CCCcceEEEecC
Confidence            998775432222211 233445555554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.87  E-value=8.2  Score=39.39  Aligned_cols=100  Identities=16%  Similarity=0.150  Sum_probs=57.6

Q ss_pred             CCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC---CCeEEEEEc-C---
Q 005459          256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAFAVGWK-S---  328 (696)
Q Consensus       256 ~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd---g~~lasg~~-D---  328 (696)
                      ...+..++|.|+|+++++ ..+|.|++++  + ++. ..+...  +......+....|+|+||   +..|.++.. +   
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~-g~~-~~~~~~--~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~  102 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--E-GRL-STYAEL--SVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGG  102 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--T-TEE-EEEEEC--CCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTS
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--C-CCc-cEeecc--eEeecCCCCceeEEECCCCCCCCEEEEEEecCCCC
Confidence            345677999999996655 5679999988  3 332 222211  111112456899999998   555544443 2   


Q ss_pred             --CcEEEEEccCCe------eEEEee--cccccceecccccCCC
Q 005459          329 --RGLTVWSVSGCR------LMSTIR--QISLSSISSPIVKPNQ  362 (696)
Q Consensus       329 --g~v~vW~~~~~~------~~~~l~--~~~~~~v~~~~~sp~~  362 (696)
                        +.|..++..+..      ++..+.  .........++|.|++
T Consensus       103 ~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG  146 (352)
T 2ism_A          103 LRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG  146 (352)
T ss_dssp             SEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS
T ss_pred             CccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC
Confidence              567788876542      222233  1111234567788876

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=92.81  E-value=11  Score=39.70  Aligned_cols=111  Identities=13%  Similarity=0.160  Sum_probs=59.5

Q ss_pred             CeEEEEEcCC---CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC----Cc
Q 005459          258 DAVCASIAPE---QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS----RG  330 (696)
Q Consensus       258 ~~v~v~~sp~---~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D----g~  330 (696)
                      .+..++++|+   +++.++ ...+.|+.++..+ +. +.++..        .......|+|+|+|+.+++-...    ..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~-g~-v~~~~~--------~~~~P~giavd~dG~lyVad~~~~~~~~g  208 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVN-QY-VDIKTT--------NIGQCADVNFTLNGDMVVVDDQSSDTNTG  208 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTT-TE-EEEECC--------CCSCEEEEEECTTCCEEEEECCSCTTSEE
T ss_pred             CCceEEEccccCCCEEEEE-eCCCCEEEEECCC-CE-EEEeec--------CCCCccEEEECCCCCEEEEcCCCCcccce
Confidence            4556899985   555544 4338899998865 33 333333        34458999999999955544321    12


Q ss_pred             EEEEEccCCee-EEEeecccccceecccccC-CCCCCccceecce---eeEEEcCCCceE
Q 005459          331 LTVWSVSGCRL-MSTIRQISLSSISSPIVKP-NQDCKYEPLMSGT---SMMQWDEYGYRL  385 (696)
Q Consensus       331 v~vW~~~~~~~-~~~l~~~~~~~v~~~~~sp-~~~~~~~~l~sg~---~~~~W~~~~~~l  385 (696)
                      +...+..++.. ...+..  ......++++| ++    ..+++-.   .+..+++.++..
T Consensus       209 v~~~~~~~~~~~~~~~~~--~~~P~giavd~~~G----~lyv~d~~~~~V~~~d~~~g~~  262 (433)
T 4hw6_A          209 IYLFTRASGFTERLSLCN--ARGAKTCAVHPQNG----KIYYTRYHHAMISSYDPATGTL  262 (433)
T ss_dssp             EEEECGGGTTCCEEEEEE--CSSBCCCEECTTTC----CEEECBTTCSEEEEECTTTCCE
T ss_pred             EEEEECCCCeeccccccc--cCCCCEEEEeCCCC----eEEEEECCCCEEEEEECCCCeE
Confidence            33333322211 011111  12345567777 44    4443322   566677765544

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=92.05  E-value=5.3  Score=44.20  Aligned_cols=35  Identities=6%  Similarity=0.092  Sum_probs=26.4

Q ss_pred             EEECCCCCe----EEEEEcCCcEEEEEccCCeeEEEeec
Q 005459          313 IAWTPDNSA----FAVGWKSRGLTVWSVSGCRLMSTIRQ  347 (696)
Q Consensus       313 l~~spdg~~----lasg~~Dg~v~vW~~~~~~~~~~l~~  347 (696)
                      ++++|++..    ++.+..|+.+...|..+++.+.....
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~  149 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVEN  149 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecC
Confidence            455554444    88888899999999999888776553

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=91.91  E-value=4  Score=42.68  Aligned_cols=178  Identities=12%  Similarity=0.120  Sum_probs=92.7

Q ss_pred             CCCcEEEEEecCCeEEEEEccCCCceeeEEeecc-CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe-eEE
Q 005459          266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYD-WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-LMS  343 (696)
Q Consensus       266 p~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~-~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~-~~~  343 (696)
                      .++.-|.++ .++.||.-++.+ ...-+.++... .     --+.|..+..||+|++||.-+. .+|.|-.+..+. ...
T Consensus        30 ~n~t~i~~a-~~n~iR~~~i~~-~~~Yk~L~~~~~i-----~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~  101 (452)
T 3pbp_A           30 QNGTRIVFI-QDNIIRWYNVLT-DSLYHSLNFSRHL-----VLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVE  101 (452)
T ss_dssp             TTTTEEEEE-ETTEEEEEETTT-CSSCEEEECTTTC-----CCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCC
T ss_pred             cCCCEEEEE-ECCEEEEEECCC-CCcceEEecCccc-----ccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCc
Confidence            344444443 357888888775 33455565510 0     0225788999999999999876 799998887331 000


Q ss_pred             Eeeccccccee--cccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeee
Q 005459          344 TIRQISLSSIS--SPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIY  421 (696)
Q Consensus       344 ~l~~~~~~~v~--~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~  421 (696)
                      ....  ...+.  +....|..    ..--+.+.-..|.+-+..                 +..++.-..|+++++|++..
T Consensus       102 ~~~~--~~~~q~~ty~l~~~~----~~~~s~I~qVlWHPl~~~-----------------ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          102 DVSI--QDAFQIFHYSIDEEE----VGPKSSIKKVLFHPKSYR-----------------DSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             CHHH--HHTTEEEEEEGGGCC------CCCCEEEEEECTTBGG-----------------GCEEEEEETTSCEEEEETTC
T ss_pred             cccc--ccccceeEEEcCCcc----cCCCCceeEEEeccccCC-----------------CCeEEEEecCCEEEEEEccc
Confidence            0000  00000  00000000    000011233344443221                 33455556678888888776


Q ss_pred             cCCeEEEEecCCCCcceeEEeecC-eee--ecCCCceEEEEEcCCCCEEEEE--eCCccE--EEEccCCceEe
Q 005459          422 GEDRLLVVQSEDTDELKILHLNLP-VSY--ISQNWPVQHVAASKDGMFLAVA--GLHGLI--LYDIRQKKWRV  487 (696)
Q Consensus       422 ~~~~~~~~~~~~~~~~~w~~~~~~-~~~--~~~~~~I~~va~s~dG~~la~a--g~dG~i--~w~~~sg~w~~  487 (696)
                      ..++         |.    .+... ..|  ......|.+++|+++|-.|-+.  .+.|-|  +|-.--.+|..
T Consensus       159 s~~~---------P~----~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlcP~LP~~~~~  218 (452)
T 3pbp_A          159 SQEK---------PI----VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFYPFLPSVLLL  218 (452)
T ss_dssp             TTSC---------CE----EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEESSCCCSEEEC
T ss_pred             CCCC---------Cc----chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEECCCCcccccc
Confidence            4332         10    00000 111  1233568999999999866664  488877  77776667753

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=91.62  E-value=13  Score=39.09  Aligned_cols=126  Identities=10%  Similarity=0.145  Sum_probs=66.9

Q ss_pred             EEEeC---CcEEEEeeccCCceeeeeeecce--ec-CCCCeEEEEEcCCCcEEEEEecC---Ce-EEEEEccCCCcee--
Q 005459          225 VLYSN---GQLMSCSVSKKGLKLAEFIKIDK--EL-GSGDAVCASIAPEQQILAVGTRR---GV-VELYDLAESASLI--  292 (696)
Q Consensus       225 ~~s~d---G~~~~~~~~d~~~~~~~~~~~~~--~~-~~~~~v~v~~sp~~~~la~g~~d---g~-v~vw~~~~~~~~~--  292 (696)
                      ++.++   |+++++... ..++.++...++.  +. ....+..++++++++++++-..+   .. +...+..  ....  
T Consensus       145 avd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~--~~~~~~  221 (433)
T 4hw6_A          145 MFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA--SGFTER  221 (433)
T ss_dssp             EECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG--GTTCCE
T ss_pred             EEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC--CCeecc
Confidence            35553   666655443 4555555433221  11 22345559999999955554322   12 2223322  2211  


Q ss_pred             eEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeeccc-ccceecccccCCC
Q 005459          293 RTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQ  362 (696)
Q Consensus       293 ~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~-~~~v~~~~~sp~~  362 (696)
                      ..+..         -.....+++.| +|+..++-..++.|..++..++.....+...+ ...-..++++|++
T Consensus       222 ~~~~~---------~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG  284 (433)
T 4hw6_A          222 LSLCN---------ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTG  284 (433)
T ss_dssp             EEEEE---------CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTS
T ss_pred             ccccc---------cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCC
Confidence            12211         22346688999 77777676677889999988665533332211 1122358888887

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.49  E-value=11  Score=37.04  Aligned_cols=67  Identities=16%  Similarity=0.329  Sum_probs=39.4

Q ss_pred             CCCCEEEEEeCC-----ccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC
Q 005459          462 KDGMFLAVAGLH-----GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       462 ~dG~~la~ag~d-----G~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      -+++.++.||.+     ..+ .||..+++|+........+.. .......+.+.+.+++........+-.|+.+
T Consensus       205 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~  277 (301)
T 2vpj_A          205 LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY-VGATVLRGRLYAIAGYDGNSLLSSIECYDPI  277 (301)
T ss_dssp             ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCBCSSSBEEEEEEEETT
T ss_pred             ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc-eeEEEECCEEEEEcCcCCCcccccEEEEcCC
Confidence            377888888875     356 999999999987643322211 1122334455555544333333566777664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=91.22  E-value=25  Score=40.27  Aligned_cols=95  Identities=11%  Similarity=0.060  Sum_probs=57.0

Q ss_pred             CeEEEEEcCCC-cEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEE-EEEcC-CcEEEE
Q 005459          258 DAVCASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKS-RGLTVW  334 (696)
Q Consensus       258 ~~v~v~~sp~~-~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~la-sg~~D-g~v~vW  334 (696)
                      .+.-+++.+.+ ++..+-...+.|.+.+++.  ....++...       .-.....|++.|.+..|. +-+.+ +.|.+.
T Consensus       472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG--~~~~~l~~~-------~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~  542 (791)
T 3m0c_C          472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRE-------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  542 (791)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTS--SSEEEEEEC-------TTCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             CcceeeeeecCCcEEEEecCCCeEEEEeCCC--CeEEEEEeC-------CCCCcceEEEecCCCCEEEecCCCCCeEEEE
Confidence            34448888876 5555666778999999874  334444321       334578999999755554 44343 678888


Q ss_pred             EccCCeeEEEeecccccceecccccCCC
Q 005459          335 SVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       335 ~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      ++.+......+. .+....+.+++++..
T Consensus       543 ~~dG~~~~~lv~-~~l~~P~GLavD~~~  569 (791)
T 3m0c_C          543 GLNGVDIYSLVT-ENIQWPNGITLDLLS  569 (791)
T ss_dssp             ETTSCCEEEEEC-SSCSCEEEEEEETTT
T ss_pred             ecCCCceEEEEe-CCCCCceEEEEecCC
Confidence            887664332222 213345556666543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=90.27  E-value=16  Score=36.46  Aligned_cols=98  Identities=15%  Similarity=0.049  Sum_probs=55.5

Q ss_pred             CCeEEEEEcCCC-cEEEEEecCCeEEEEEccCC--CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeE-EEEEcCCcEE
Q 005459          257 GDAVCASIAPEQ-QILAVGTRRGVVELYDLAES--ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKSRGLT  332 (696)
Q Consensus       257 ~~~v~v~~sp~~-~~la~g~~dg~v~vw~~~~~--~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~l-asg~~Dg~v~  332 (696)
                      ..+..++|++++ ++..+-..++.|..++.+..  +.....+..       ..-.....|++.+.+..| ++-..++.|.
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~-------~~~~~p~glavd~~~~~ly~~d~~~~~I~  102 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------RDIQAPDGLAVDWIHSNIYWTDSVLGTVS  102 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-------SSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe-------CCCCCcCEEEEeecCCeEEEEECCCCEEE
Confidence            455669999865 55556566789999987641  012222211       022345788998755544 4545678999


Q ss_pred             EEEccCCeeEEEeecccccceecccccCCC
Q 005459          333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      +.++.+......+... ......++++|.+
T Consensus       103 ~~~~~g~~~~~~~~~~-~~~P~~iavdp~~  131 (316)
T 1ijq_A          103 VADTKGVKRKTLFREN-GSKPRAIVVDPVH  131 (316)
T ss_dssp             EEETTSSSEEEEEECT-TCCEEEEEEETTT
T ss_pred             EEeCCCCceEEEEECC-CCCcceEEeCCCC
Confidence            9998876433222221 2345566666643

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=90.12  E-value=17  Score=36.47  Aligned_cols=94  Identities=10%  Similarity=0.006  Sum_probs=53.8

Q ss_pred             eEEEEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE-c-CCcEEEEE
Q 005459          259 AVCASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-K-SRGLTVWS  335 (696)
Q Consensus       259 ~v~v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~-~-Dg~v~vW~  335 (696)
                      +..+++.+ .+++..+-...+.|.+++.+.  .....+...       .......+++.|++..|.... . .+.|...+
T Consensus        81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG--~~~~~l~~~-------~~~~P~giavdp~~g~ly~td~~~~~~I~r~~  151 (318)
T 3sov_A           81 PDGLACDWLGEKLYWTDSETNRIEVSNLDG--SLRKVLFWQ-------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAG  151 (318)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECS-------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEE
T ss_pred             ccEEEEEcCCCeEEEEECCCCEEEEEECCC--CcEEEEEeC-------CCCCccEEEEeCCCCEEEEEecCCCCEEEEEE
Confidence            34488887 455556666678999999864  333333210       344568999999655555444 2 46777777


Q ss_pred             ccCCeeEEEeecccccceecccccCCC
Q 005459          336 VSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       336 ~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      +.+... ..+...+...-+.++++|++
T Consensus       152 ~dG~~~-~~~~~~~l~~Pnglavd~~~  177 (318)
T 3sov_A          152 MDGSSR-FIIINSEIYWPNGLTLDYEE  177 (318)
T ss_dssp             TTSCSC-EEEECSSCSCEEEEEEETTT
T ss_pred             cCCCCe-EEEEECCCCCccEEEEeccC
Confidence            765432 22211112234556666643

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=89.88  E-value=20  Score=37.14  Aligned_cols=99  Identities=14%  Similarity=0.042  Sum_probs=57.2

Q ss_pred             CCCeEEEEEcCCCc-EEEEEecCCeEEEEEccCCC--ceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEcCCcE
Q 005459          256 SGDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGL  331 (696)
Q Consensus       256 ~~~~v~v~~sp~~~-~la~g~~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~Dg~v  331 (696)
                      ...++-++|+++.. +..+-..++.|+.++++...  ....++..       ........|++.+. ++...+-...+.|
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-------~~~~~p~glavD~~~~~lY~~d~~~~~I  183 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-------RDIQAPDGLAVDWIHSNIYWTDSVLGTV  183 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC-------SSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe-------CCCCCcccEEEEecCCceEEEECCCCeE
Confidence            34566699998554 55555567888888876411  11222222       02345788999884 5555555567889


Q ss_pred             EEEEccCCeeEEEeecccccceecccccCCC
Q 005459          332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      .+.++.+......+... ......++++|.+
T Consensus       184 ~~~~~~g~~~~~l~~~~-~~~P~~iavdp~~  213 (400)
T 3p5b_L          184 SVADTKGVKRKTLFREN-GSKPRAIVVDPVH  213 (400)
T ss_dssp             EEECTTTCSEEEEEECS-SCCEEEEEEETTT
T ss_pred             EEEeCCCCceEEEEeCC-CCCcceEEEeccc
Confidence            99998876543333322 3335566676643

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=89.76  E-value=16  Score=35.86  Aligned_cols=66  Identities=18%  Similarity=0.306  Sum_probs=40.1

Q ss_pred             CCCEEEEEeCCc-----cE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC
Q 005459          463 DGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       463 dG~~la~ag~dG-----~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      +++.++.||.++     .+ .||..+++|+........+. ........+.+++.+++........+..|+.+
T Consensus       200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~  271 (306)
T 3ii7_A          200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV-TVKCAAVGSIVYVLAGFQGVGRLGHILEYNTE  271 (306)
T ss_dssp             TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS-CCEEEEETTEEEEEECBCSSSBCCEEEEEETT
T ss_pred             CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc-ceeEEEECCEEEEEeCcCCCeeeeeEEEEcCC
Confidence            788888888653     46 99999999998765433221 11122334555666655433334567777664

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=89.55  E-value=21  Score=36.94  Aligned_cols=95  Identities=11%  Similarity=0.053  Sum_probs=54.9

Q ss_pred             CeEEEEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE-Ec-CCcEEEE
Q 005459          258 DAVCASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WK-SRGLTVW  334 (696)
Q Consensus       258 ~~v~v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg-~~-Dg~v~vW  334 (696)
                      .+.-+++.+ .+++..+-...+.|.+.+++.  ....++...       .-.....|++.|.+..|... +. .+.|...
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g--~~~~~l~~~-------~~~~P~~iavdp~~g~ly~td~~~~~~I~~~  230 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRE-------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  230 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTT--CSEEEEEEC-------SSCCEEEEEEETTTTEEEEEECSSSCCEEEE
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCC--CceEEEEeC-------CCCCcceEEEecccCeEEEEeCCCCCEEEEE
Confidence            344489988 556666666788999988874  333333220       23457899999965555444 33 3678888


Q ss_pred             EccCCeeEEEeecccccceecccccCCC
Q 005459          335 SVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       335 ~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      ++.+......+... ....+.++++|++
T Consensus       231 ~~dG~~~~~~~~~~-l~~P~glavd~~~  257 (400)
T 3p5b_L          231 GLNGVDIYSLVTEN-IQWPNGITLDLLS  257 (400)
T ss_dssp             ETTSCSCEEEECSS-CSCEEEEEEETTT
T ss_pred             eCCCCccEEEEECC-CCceEEEEEEeCC
Confidence            87765432222211 2334555665543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=89.42  E-value=13  Score=37.52  Aligned_cols=79  Identities=15%  Similarity=0.172  Sum_probs=47.9

Q ss_pred             EEEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC--CCCCCCeEEEEE---CCCCCeEEEEEc-------
Q 005459          261 CASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS--MDDTGPVSCIAW---TPDNSAFAVGWK-------  327 (696)
Q Consensus       261 ~v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~--~~h~g~V~~l~~---spdg~~lasg~~-------  327 (696)
                      +++|.++ ++++++...+|+|..|+... +..... ...  +.+  -+....+..|.|   .|+|+.+++...       
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~-~~~~~~-~~~--~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKT-QSHFNV-VID--GASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTT-CCEEEE-CCT--TTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCC-CeEEEE-ecC--CccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence            3778774 55555555799999999874 333322 210  001  011123688999   699888876442       


Q ss_pred             ------CCcEEEEEcc---CCeeEE
Q 005459          328 ------SRGLTVWSVS---GCRLMS  343 (696)
Q Consensus       328 ------Dg~v~vW~~~---~~~~~~  343 (696)
                            ++.|..+|+.   +++.+.
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~  117 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVW  117 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSE
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEE
Confidence                  5778889988   555443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=89.25  E-value=21  Score=36.34  Aligned_cols=62  Identities=11%  Similarity=0.117  Sum_probs=39.9

Q ss_pred             eEE-EEEcC-------CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE
Q 005459          259 AVC-ASIAP-------EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW  326 (696)
Q Consensus       259 ~v~-v~~sp-------~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~  326 (696)
                      +.+ ++|..       ++++++.....+.|...+++. ++........     .+-.+.+..|++.|||..+++..
T Consensus       272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~-~~~~~~~~~~-----~~~~~rp~~v~~~pdG~lyv~td  341 (353)
T 2g8s_A          272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNG-DKVTEDGRIL-----TDRGQRIRDVRTGPDGYLYVLTD  341 (353)
T ss_dssp             CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEET-TEEEEEEEES-----GGGCCCEEEEEECTTSCEEEEEC
T ss_pred             CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCC-CeEeeeEEcc-----cCCCCceeEEEECCCCcEEEEEe
Confidence            444 77763       578888877888888888775 4332221110     01235799999999999666543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=89.18  E-value=19  Score=35.94  Aligned_cols=74  Identities=9%  Similarity=0.015  Sum_probs=46.5

Q ss_pred             CeEEEEEcCC-CcEEEEEecCCeEEEEEccCCCce-eeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEcCCcEEEE
Q 005459          258 DAVCASIAPE-QQILAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVW  334 (696)
Q Consensus       258 ~~v~v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~-~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~Dg~v~vW  334 (696)
                      .++.++|+++ +++..+-..++.|..++.+. ... ...+..        .......+++.+. |+...+-...+.|.+.
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g-~~~~~~~~~~--------~l~~p~glavd~~~g~ly~~d~~~~~I~~~  106 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK-TESVQNVVVS--------GLLSPDGLACDWLGEKLYWTDSETNRIEVS  106 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTS-SSCCCEEEEE--------CCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccC-CCceEEEEcC--------CCCCccEEEEEcCCCeEEEEECCCCEEEEE
Confidence            3455888884 55666666778898888875 322 122222        2344677888874 4444555566788888


Q ss_pred             EccCCe
Q 005459          335 SVSGCR  340 (696)
Q Consensus       335 ~~~~~~  340 (696)
                      ++.+..
T Consensus       107 ~~dG~~  112 (318)
T 3sov_A          107 NLDGSL  112 (318)
T ss_dssp             ETTSCS
T ss_pred             ECCCCc
Confidence            887653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=88.89  E-value=19  Score=35.35  Aligned_cols=66  Identities=24%  Similarity=0.390  Sum_probs=38.7

Q ss_pred             CCCCEEEEEeCCc-----cE-EEEccCCceEecCCccceeeeEEEeEee-eCcEEEEEEeecCCCeEEEEEeeCC
Q 005459          462 KDGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLW-LGKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       462 ~dG~~la~ag~dG-----~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w-~~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      -+++.++.||.++     .+ .||..+++|.........+.. . +++- .+.+.+.+++........+.+|+.+
T Consensus       203 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~-~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~  275 (302)
T 2xn4_A          203 LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-A-GVCAVNGLLYVVGGDDGSCNLASVEYYNPT  275 (302)
T ss_dssp             ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-C-EEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-C-eEEEECCEEEEECCcCCCcccccEEEEcCC
Confidence            3788888888754     57 999999999987644332211 1 2333 3445555544332223456666653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=87.98  E-value=21  Score=35.87  Aligned_cols=69  Identities=10%  Similarity=0.171  Sum_probs=41.1

Q ss_pred             EEEEe-CCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHh--hc--ccccEEEE---cCCCcEEEEEec--------
Q 005459           25 IYFKV-NNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQ--RE--GENLQAVW---SPDTKLIAVVTS--------   87 (696)
Q Consensus        25 v~fs~-dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~--~~--G~~~~v~w---sPDg~~lav~t~--------   87 (696)
                      +.+.+ +|+|+++. ..++|..|+.. .+... ...  ...+.  ..  .....+.|   -|+++++++...        
T Consensus        18 ~~wd~~~g~~~vs~l~~g~V~~~~~~-~~~~~-~~~--~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           18 TIYDRTRQVFYQSNLYKGRIEVYNPK-TQSHF-NVV--IDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTT-TCCEE-EEC--CTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             ccCcCCCCEEEEEeccCCEEEEEcCC-CCeEE-EEe--cCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            34555 56777666 57899999985 22211 111  11111  11  12357999   699888886442        


Q ss_pred             -----CcEEEEEEEE
Q 005459           88 -----SLYLHIFKVQ   97 (696)
Q Consensus        88 -----dg~l~l~~l~   97 (696)
                           +..|..||+.
T Consensus        94 ~~~~g~~~v~~~Dl~  108 (334)
T 2p9w_A           94 QSSHGASSFHSFNLP  108 (334)
T ss_dssp             CCSSSCCEEEEEESS
T ss_pred             cccCCCCEEEEEcCC
Confidence                 5778888886

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=87.79  E-value=43  Score=38.24  Aligned_cols=99  Identities=14%  Similarity=0.038  Sum_probs=57.9

Q ss_pred             CCCCeEEEEEcCC-CcEEEEEecCCeEEEEEccCCC---ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEE-EEEcCC
Q 005459          255 GSGDAVCASIAPE-QQILAVGTRRGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKSR  329 (696)
Q Consensus       255 ~~~~~v~v~~sp~-~~~la~g~~dg~v~vw~~~~~~---~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~la-sg~~Dg  329 (696)
                      +...++.++|++. ++++.+-..++.|+.++++...   .....+..        .......|++.+.+..|. +-...+
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~--------~l~~P~GLAvD~~~~~LY~tD~~~~  493 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--------DIQAPDGLAVDWIHSNIYWTDSVLG  493 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS--------SCSCCCEEEEETTTTEEEEEETTTT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec--------CCCCcceeeeeecCCcEEEEecCCC
Confidence            3345566999985 5555566667888888886411   11222221        234567899998775554 445668


Q ss_pred             cEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459          330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       330 ~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      .|.+.++.+.... ++..........++++|..
T Consensus       494 ~I~v~~ldG~~~~-~l~~~~l~~P~gIaVDp~~  525 (791)
T 3m0c_C          494 TVSVADTKGVKRK-TLFRENGSKPRAIVVDPVH  525 (791)
T ss_dssp             EEEEEETTSSSEE-EEEECTTCCEEEEEEETTT
T ss_pred             eEEEEeCCCCeEE-EEEeCCCCCcceEEEecCC
Confidence            8999998876533 3322223445667777653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=86.79  E-value=36  Score=36.36  Aligned_cols=76  Identities=13%  Similarity=0.074  Sum_probs=48.3

Q ss_pred             CCCcEEEEEecCCeEEEEEccCCCceeeEEeecc----------CCCCC------CCCCCeEEEEECCC-CCeEEEEEcC
Q 005459          266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYD----------WGYSM------DDTGPVSCIAWTPD-NSAFAVGWKS  328 (696)
Q Consensus       266 p~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~----------~~~~~------~h~g~V~~l~~spd-g~~lasg~~D  328 (696)
                      +++.+.++=..+..||.++. + + .+.++.+..          +++..      +.-..-..|+++++ |..+++=..+
T Consensus       389 ~~g~lyVaD~~N~rIr~i~~-~-G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N  465 (496)
T 3kya_A          389 EEYDFYFVDRLNFCVRKVTP-E-G-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVG  465 (496)
T ss_dssp             CCEEEEEEEGGGTEEEEECT-T-C-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTT
T ss_pred             CCCeEEEEECCCCEEEEEeC-C-C-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCC
Confidence            56777777778899999983 3 3 455665531          12111      11234678999997 7766666677


Q ss_pred             CcEEEEEccCCeeEEE
Q 005459          329 RGLTVWSVSGCRLMST  344 (696)
Q Consensus       329 g~v~vW~~~~~~~~~~  344 (696)
                      +.|+.+++.+..+...
T Consensus       466 ~rIrki~~~~~~~~~~  481 (496)
T 3kya_A          466 HTIRTISMEQEENVAG  481 (496)
T ss_dssp             TEEEEEEECCCC----
T ss_pred             CEEEEEECCCCccccc
Confidence            8999999987765543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=86.17  E-value=26  Score=34.14  Aligned_cols=28  Identities=32%  Similarity=0.517  Sum_probs=22.1

Q ss_pred             CCCCEEEEEeCC-----ccE-EEEccCCceEecC
Q 005459          462 KDGMFLAVAGLH-----GLI-LYDIRQKKWRVFG  489 (696)
Q Consensus       462 ~dG~~la~ag~d-----G~i-~w~~~sg~w~~f~  489 (696)
                      -+++.++.||.+     ..+ .||..+++|+...
T Consensus       252 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  285 (301)
T 2vpj_A          252 LRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVT  285 (301)
T ss_dssp             ETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEE
T ss_pred             ECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcC
Confidence            378888888876     356 9999999998753

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=85.37  E-value=34  Score=34.70  Aligned_cols=107  Identities=7%  Similarity=0.064  Sum_probs=62.6

Q ss_pred             EEEeeccCCceeeeeee-------ccee--cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC----ceeeEEeec
Q 005459          233 MSCSVSKKGLKLAEFIK-------IDKE--LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA----SLIRTVSLY  298 (696)
Q Consensus       233 ~~~~~~d~~~~~~~~~~-------~~~~--~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~----~~~~~~~~~  298 (696)
                      +++...++.+.+|++..       .+..  ......+. |++.+....|.++-+|.-|..|+.+...    ..+..+.. 
T Consensus       146 afV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-  224 (355)
T 3amr_A          146 AMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-  224 (355)
T ss_dssp             EEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-
T ss_pred             EEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC-
Confidence            34444556666666632       1111  11123444 8889999999999999776666654322    22222211 


Q ss_pred             cCCCCCCC-CCCeEEEEE--CCCCC-eEEEEE-cCCcEEEEEcc-CCeeEEEee
Q 005459          299 DWGYSMDD-TGPVSCIAW--TPDNS-AFAVGW-KSRGLTVWSVS-GCRLMSTIR  346 (696)
Q Consensus       299 ~~~~~~~h-~g~V~~l~~--spdg~-~lasg~-~Dg~v~vW~~~-~~~~~~~l~  346 (696)
                            +| ...+..|+.  .++|+ +|++.+ .+++..+|+.. ..+.+.+++
T Consensus       225 ------g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          225 ------RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             ------SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             ------CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence                  12 235777877  66666 555555 67899999996 556666654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=84.64  E-value=32  Score=33.78  Aligned_cols=65  Identities=17%  Similarity=0.332  Sum_probs=38.6

Q ss_pred             CCCEEEEEeCC-----ccE-EEEccCCceEecCCccceeeeEEEeEee-eCcEEEEEEeecCCCeEEEEEeeCC
Q 005459          463 DGMFLAVAGLH-----GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW-LGKIIVVCNYIDSSNTYELLFYPRY  529 (696)
Q Consensus       463 dG~~la~ag~d-----G~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w-~~~~lv~~~~~~~~~~~~lr~y~~~  529 (696)
                      +++.++.||.+     ..+ .||+.+++|+........+.. . +++. .+.+++.+++........+.+|+.+
T Consensus       215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~-~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~  286 (308)
T 1zgk_A          215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA-L-GITVHQGRIYVLGGYDGHTFLDSVECYDPD  286 (308)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS-C-EEEEETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred             CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc-e-EEEEECCEEEEEcCcCCCcccceEEEEcCC
Confidence            78888888875     346 999999999987643322211 1 2222 3445555544433333466677654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=83.82  E-value=5  Score=37.98  Aligned_cols=100  Identities=13%  Similarity=0.105  Sum_probs=56.9

Q ss_pred             EEEEEeCCcEEEEeeccCCceee--eeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCC-------ceee
Q 005459          223 LFVLYSNGQLMSCSVSKKGLKLA--EFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESA-------SLIR  293 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~d~~~~~~--~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~-------~~~~  293 (696)
                      +..+..| ++++-...+.....|  ......+ .+-.....++|+|+|.+.|+  .+|.  +|..+...       ..-.
T Consensus         7 l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~-~gw~~~~~laf~P~G~LYaV--~~G~--Ly~~~~~t~~~~~W~~s~t   80 (236)
T 1tl2_A            7 LRGVYQD-KFYQGTYPQNKNDNWLARATLIGK-GGWSNFKFLFLSPGGELYGV--LNDK--IYKGTPPTHDNDNWMGRAK   80 (236)
T ss_dssp             EEEEETT-EEEEESCCCSTTCCHHHHSEEEES-SSCTTCSEEEECTTSCEEEE--ETTE--EEEESCCCSTTCCHHHHCE
T ss_pred             EEEEeCC-cEEecCCCCCcccchhhhccccCc-cccccceeEEECCCccEEEE--eCCe--EEEECCCCCCccccccccc
Confidence            3445566 766666666554455  2211111 01123336999999999999  6776  55544311       1111


Q ss_pred             EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459          294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS  337 (696)
Q Consensus       294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~  337 (696)
                      .+-..      +-.+ -.++.|.|+|.+.++  .||.|.-++..
T Consensus        81 ~IG~~------Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           81 KIGNG------GWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             EEECS------CGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             Eeccc------cccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            11100      0111 478999999999988  56988878763

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=83.78  E-value=6  Score=37.41  Aligned_cols=64  Identities=13%  Similarity=0.060  Sum_probs=40.7

Q ss_pred             EEEEcCCCcEEEEEecCCeEEEEEccCCCc-ee----eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459          261 CASIAPEQQILAVGTRRGVVELYDLAESAS-LI----RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS  335 (696)
Q Consensus       261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~-~~----~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~  335 (696)
                      .+.|.|+|.+.|+  .||.|.-++-.+.+. ..    ..+...       -=..+..|.|.|||...|+.  |+.+.-+.
T Consensus        92 a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~-------gw~~~~~lff~p~G~Lyav~--dg~lyr~~  160 (236)
T 1tl2_A           92 FLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSG-------GWSGFKFLFFHPNGYLYAVH--GQQFYKAL  160 (236)
T ss_dssp             EEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECS-------SGGGEEEEEECTTSCEEEEE--TTEEEEEC
T ss_pred             EEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccC-------CCCceEEEEECCCceEEEEe--CCcEEecC
Confidence            4889999999999  679876665422111 10    111110       11458999999999998888  66654333

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=83.65  E-value=12  Score=39.61  Aligned_cols=68  Identities=18%  Similarity=0.175  Sum_probs=39.3

Q ss_pred             CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeec-cCCCCCCCCCCeEEEEECCC---CCeEEEEE
Q 005459          257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY-DWGYSMDDTGPVSCIAWTPD---NSAFAVGW  326 (696)
Q Consensus       257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~-~~~~~~~h~g~V~~l~~spd---g~~lasg~  326 (696)
                      ..+..++|.|+|+++++-...+.|++++..+ +.. ..+... +........+....|+|+||   +..|....
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~-g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~   98 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPES-GSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG   98 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCC-CcE-eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence            4566799999999887755445787776543 332 222211 11001113567889999995   44454443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=82.59  E-value=14  Score=37.53  Aligned_cols=81  Identities=14%  Similarity=0.133  Sum_probs=47.4

Q ss_pred             CCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC---CCeEEEEE---cC
Q 005459          255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAFAVGW---KS  328 (696)
Q Consensus       255 ~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd---g~~lasg~---~D  328 (696)
                      +...+..++|.|||+++++--..|.|++++.++ +.. ..+.... .......+....|+|+||   +..|....   .+
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~-g~~-~~v~~~~-~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKT-GRK-TELGEVP-GVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTT-CCE-EEEEECT-TCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCC-CcE-eeecccC-ceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence            335566699999999887766589999887544 332 2222110 011123567899999996   33444332   33


Q ss_pred             CcEEEEEccC
Q 005459          329 RGLTVWSVSG  338 (696)
Q Consensus       329 g~v~vW~~~~  338 (696)
                      +.|.-|...+
T Consensus       107 ~~v~R~~~~~  116 (347)
T 3das_A          107 NRIVRMLYDE  116 (347)
T ss_dssp             EEEEEEEBCT
T ss_pred             CEEEEEEeCC
Confidence            4555555543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=81.82  E-value=47  Score=33.63  Aligned_cols=99  Identities=12%  Similarity=0.079  Sum_probs=55.8

Q ss_pred             CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC---CCeEEEEEc----C-
Q 005459          257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAFAVGWK----S-  328 (696)
Q Consensus       257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd---g~~lasg~~----D-  328 (696)
                      ..+..++|.|+|+++++ ..+|.|++++. + +.  ..+...  +......+....|+|+||   +..|.++..    + 
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~-G~--~~~~~~--~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~  101 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-S-GK--KLVASF--DVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG  101 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEECS-S-CE--EEEEEC--CCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-C-Cc--eEeecc--ceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence            45666999999986655 56699988863 3 33  223221  111112356899999998   444544433    3 


Q ss_pred             ---CcEEEEEccCC-------e-eEEEeecccccceecccccCCC
Q 005459          329 ---RGLTVWSVSGC-------R-LMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       329 ---g~v~vW~~~~~-------~-~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                         +.|..++..+.       + ++..+..........++|.|++
T Consensus       102 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG  146 (354)
T 3a9g_A          102 HIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG  146 (354)
T ss_dssp             CEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS
T ss_pred             CcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC
Confidence               56777776654       1 1222332112234567777776

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=80.57  E-value=3  Score=47.22  Aligned_cols=96  Identities=13%  Similarity=0.053  Sum_probs=51.7

Q ss_pred             CeEEEEEcCCCcEEEE-EecCCeEEEEEccCC---CceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEcCCcEE
Q 005459          258 DAVCASIAPEQQILAV-GTRRGVVELYDLAES---ASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLT  332 (696)
Q Consensus       258 ~~v~v~~sp~~~~la~-g~~dg~v~vw~~~~~---~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~Dg~v~  332 (696)
                      .+..++|+++...|.. -..++.|+.++++..   ......+..        .......|++.+. |+++++-...+.|.
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~--------~~~~P~glavD~~~g~LY~tD~~~~~I~  478 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--------DIQAPDGLAVDWIHSNIYWTDSVLGTVS  478 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS--------CC--CCCEECCCSSSBCEECCTTTSCEE
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC--------CCCCcceEEEEeeCCcEEEEeccCCeEE
Confidence            4445889986555544 445678888887641   011111111        1123456888864 44455545568899


Q ss_pred             EEEccCCeeEEEeecccccceecccccCCC
Q 005459          333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      +.++.+......+... ......++++|.+
T Consensus       479 v~d~dg~~~~~l~~~~-~~~P~giavDp~~  507 (699)
T 1n7d_A          479 VADTKGVKRKTLFREQ-GSKPRAIVVDPVH  507 (699)
T ss_dssp             EEBSSSCCEEEECCCS-SCCCCCEECCSSS
T ss_pred             EEecCCCceEEEEeCC-CCCcceEEEccCC
Confidence            9998876533332221 2334556666643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	696
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.7 bits (101), Expect = 5e-05
 Identities = 16/124 (12%), Positives = 41/124 (33%), Gaps = 7/124 (5%)

Query: 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS 320
           C +   ++  +A+      V +Y+       ++   L +        G V+ + W PD++
Sbjct: 12  CHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKE------HNGQVTGVDWAPDSN 64

Query: 321 AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDE 380
                   R   VW++ G     T+  + ++  +  +     + K+        +     
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 381 YGYR 384
               
Sbjct: 125 EQEN 128

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS 320
             S +   ++L  G       ++D    A     ++ +           VSC+  T D  
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDA-LKADRAGVLAGH--------DNRVSCLGVTDDGM 325

Query: 321 AFAVGWKSRGLTVWS 335
           A A G     L +W+
Sbjct: 326 AVATGSWDSFLKIWN 340

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM---DDTGPVSCIAWTP 317
                 + Q +  G+    V+L++L  + +   + +       +        V  +A T 
Sbjct: 259 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318

Query: 318 DNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346
           ++     G K RG+  W       +  ++
Sbjct: 319 NDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 9/119 (7%)

Query: 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV-CASIAPEQQILAVGTRRGVVELY 283
           ++GQ+         L      +  ++   L  G+ V   +I+   + +  G + G V+++
Sbjct: 19  ADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGK-GCVKVW 77

Query: 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM 342
           D++   +      L            +      PD     VG ++  L++W ++     
Sbjct: 78  DISHPGNKSPVSQLDCLNR----DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	696
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.95
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.95
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.92
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.91
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.9
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.88
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.88
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.88
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.87
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.85
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.85
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.82
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.8
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.75
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.71
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.68
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.65
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.65
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.64
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.63
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.59
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.57
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.56
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.51
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.47
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.45
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.34
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.11
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.94
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.86
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.74
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.61
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.47
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.46
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.41
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.32
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.3
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.19
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.08
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.03
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.01
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.98
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.94
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.94
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.84
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.82
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.7
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.64
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.41
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.36
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.32
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.87
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	94.77
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.3
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	92.36
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	91.46
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.41
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	89.04

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=8.6e-30  Score=263.12  Aligned_cols=273  Identities=15%  Similarity=0.181  Sum_probs=215.0

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCce-eeEEeec
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASL-IRTVSLY  298 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~-~~~~~~~  298 (696)
                      ++++|+|+.++.+. +..+.+|+....+.   +.+|.+.+. ++|+|+|++||+|+.||+|++||+...... ...+.. 
T Consensus        23 ~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~-  100 (311)
T d1nr0a1          23 LGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV-  100 (311)
T ss_dssp             CEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC-
T ss_pred             EEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccccc-
Confidence            45788998887764 45578888765533   368888877 999999999999999999999999873322 345666 


Q ss_pred             cCCCCCCCCCCeEEEEECCCCCeEEEEEc--CCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccc-eecce--
Q 005459          299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWK--SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP-LMSGT--  373 (696)
Q Consensus       299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~--Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~-l~sg~--  373 (696)
                             |.++|.+++|+|||+.|++++.  ++.+++|+...++...++.+| ...|++++|+|++    +. +++|+  
T Consensus       101 -------~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h-~~~v~~v~~~~~~----~~~l~sgs~d  168 (311)
T d1nr0a1         101 -------FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQ-ARAMNSVDFKPSR----PFRIISGSDD  168 (311)
T ss_dssp             -------SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCC-SSCEEEEEECSSS----SCEEEEEETT
T ss_pred             -------ccCcccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc----eeeecccccc
Confidence                   9999999999999999999986  456999999999988899888 7789999999987    54 67665  


Q ss_pred             -eeEEEcCCCceEEEEecCCcceEE--EEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee
Q 005459          374 -SMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI  449 (696)
Q Consensus       374 -~~~~W~~~~~~l~~~~~~~~~~v~--~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  449 (696)
                       .+++|+.+++++.....+|...|.  .+++ ++.+++++.|+.+++|++..+... ..+.            .......
T Consensus       169 ~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~-~~~~------------~~~~~~~  235 (311)
T d1nr0a1         169 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT-GVFE------------DDSLKNV  235 (311)
T ss_dssp             SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-EECB------------CTTSSSC
T ss_pred             cccccccccccccccccccccccccccccCcccccccccccccccccccccccccc-cccc------------ccccccc
Confidence             799999999999999999998884  4455 888999999999999997654431 1110            0122345


Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE-ecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEee
Q 005459          450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYP  527 (696)
Q Consensus       450 ~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~-~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~  527 (696)
                      +|+.+|.+++|+|||++||+|+.||.+ +||+++++.. .+.. .......+.++.|.++.++++     +.+..|++|+
T Consensus       236 ~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~-~~~~~~~~~~~~~~~~~l~s~-----s~dG~i~~wd  309 (311)
T d1nr0a1         236 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV-GTRIEDQQLGIIWTKQALVSI-----SANGFINFVN  309 (311)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSGGGCEEEEEECSSCEEEE-----ETTCCEEEEE
T ss_pred             cccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEEC-CCCccceEEEEEecCCEEEEE-----ECCCEEEEEe
Confidence            799999999999999999999999999 9999998743 2211 111123356889999999887     3447899997


Q ss_pred             CC
Q 005459          528 RY  529 (696)
Q Consensus       528 ~~  529 (696)
                      .|
T Consensus       310 ~d  311 (311)
T d1nr0a1         310 PE  311 (311)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-29  Score=263.40  Aligned_cols=218  Identities=19%  Similarity=0.239  Sum_probs=183.1

Q ss_pred             EEeCCcEEEEeeccCCceeeeeeecc-----eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKID-----KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      ++|||+.+++++.|+++++|+.....     ...+|...+. ++|+|++.++++++.|+.|++|++.+ .+.......  
T Consensus       105 ~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~-~~~~~~~~~--  181 (337)
T d1gxra_         105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQG--  181 (337)
T ss_dssp             ECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEEEEEECC--
T ss_pred             EcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc--
Confidence            67788888888888888888865322     1256777776 99999999999999999999999987 677777776  


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM  376 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~  376 (696)
                            |.+.|.+++|+|+++.+++|+.|+.+++||+.+++.+..+..  ...|.+++|+|++    +.+++|.   .+.
T Consensus       182 ------~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~--~~~i~~l~~~~~~----~~l~~~~~d~~i~  249 (337)
T d1gxra_         182 ------HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF--TSQIFSLGYCPTG----EWLAVGMESSNVE  249 (337)
T ss_dssp             ------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--SSCEEEEEECTTS----SEEEEEETTSCEE
T ss_pred             ------cccccccccccccccccccccccccccccccccceeeccccc--ccceEEEEEcccc----cccceeccccccc
Confidence                  999999999999999999999999999999999988877653  5679999999998    8888776   899


Q ss_pred             EEcCCCceEEEEecCCcceEE--EEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC
Q 005459          377 QWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW  453 (696)
Q Consensus       377 ~W~~~~~~l~~~~~~~~~~v~--~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  453 (696)
                      +|+..+.+.... ..|...|.  ++++ ++.+++++.|+.+++|++.+++.                    . ....|..
T Consensus       250 i~d~~~~~~~~~-~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~--------------------~-~~~~~~~  307 (337)
T d1gxra_         250 VLHVNKPDKYQL-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--------------------I-FQSKESS  307 (337)
T ss_dssp             EEETTSSCEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--------------------E-EEEECSS
T ss_pred             cccccccccccc-cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCE--------------------E-EEccCCC
Confidence            999998887644 57788884  4555 78999999999999999766553                    1 2245788


Q ss_pred             ceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459          454 PVQHVAASKDGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       454 ~I~~va~s~dG~~la~ag~dG~i-~w~~  480 (696)
                      +|.+++|+|||++||+||.||.+ +||+
T Consensus       308 ~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         308 SVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99999999999999999999999 9996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.3e-28  Score=254.07  Aligned_cols=252  Identities=11%  Similarity=0.080  Sum_probs=186.8

Q ss_pred             CceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecC
Q 005459           21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE  100 (696)
Q Consensus        21 ~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~  100 (696)
                      ..-+++++|+|+.||.++++.+.||+++ .......+.      .+.+.+.+++|+|||++||+++.||+|+||++....
T Consensus        19 ~~~~~a~~~~g~~l~~~~~~~v~i~~~~-~~~~~~~~~------~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~   91 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCNGTSVYTVPVG-SLTDTEIYT------EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT   91 (311)
T ss_dssp             CCCCCEECTTSSEEEEEETTEEEEEETT-CSSCCEEEC------CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred             CeEEEEEcCCCCEEEEEeCCEEEEEECC-CCceeEEEc------CCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc
Confidence            3445899999999999988899999996 433333332      134678999999999999999999999999987543


Q ss_pred             cccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eeeCCCeEEEEecC--CcEEEEecCCccccceeeccCCCCC
Q 005459          101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSD--GSLYSISWKGEFYGAFELVHSSNDS  176 (696)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~~~~llv~t~~--g~i~~~~w~~~~~~~~~~~~~p~~~  176 (696)
                      ....                 ..    +..+...|.+  +.++++.+++++.+  ..+.++.|+.....           
T Consensus        92 ~~~~-----------------~~----~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~-----------  139 (311)
T d1nr0a1          92 HILK-----------------TT----IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN-----------  139 (311)
T ss_dssp             CCEE-----------------EE----EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBC-----------
T ss_pred             cccc-----------------cc----cccccCcccccccccccccccccccccccccccccccccccc-----------
Confidence            2110                 00    1222334444  45677788888754  45777777632211           


Q ss_pred             cccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcE-EEEeeccCCceeeeeeeccee--
Q 005459          177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQL-MSCSVSKKGLKLAEFIKIDKE--  253 (696)
Q Consensus       177 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~-~~~~~~d~~~~~~~~~~~~~~--  253 (696)
                                               ..+..+...|.+++          ++|+|+. +++++.|+++++||....+..  
T Consensus       140 -------------------------~~l~~h~~~v~~v~----------~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~  184 (311)
T d1nr0a1         140 -------------------------GNLTGQARAMNSVD----------FKPSRPFRIISGSDDNTVAIFEGPPFKFKST  184 (311)
T ss_dssp             -------------------------BCCCCCSSCEEEEE----------ECSSSSCEEEEEETTSCEEEEETTTBEEEEE
T ss_pred             -------------------------cccccccccccccc----------ccccceeeecccccccccccccccccccccc
Confidence                                     01223444576655          6778874 667888999999998765443  


Q ss_pred             -cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459          254 -LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL  331 (696)
Q Consensus       254 -~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v  331 (696)
                       .+|...++ ++++|++++|++|+.||.|++||..+ ......+.... ....+|.++|++++|+|||++|++|+.||+|
T Consensus       185 ~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~-~~~~~~~~~~~-~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v  262 (311)
T d1nr0a1         185 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD-GTKTGVFEDDS-LKNVAHSGSVFGLTWSPDGTKIASASADKTI  262 (311)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEEECBCTT-SSSCSSSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             cccccccccccccCcccccccccccccccccccccc-ccccccccccc-cccccccccccccccCCCCCEEEEEeCCCeE
Confidence             67888887 99999999999999999999999987 56555554321 1223599999999999999999999999999


Q ss_pred             EEEEccCCeeEEEeecc
Q 005459          332 TVWSVSGCRLMSTIRQI  348 (696)
Q Consensus       332 ~vW~~~~~~~~~~l~~~  348 (696)
                      ++||+.+++++.++..+
T Consensus       263 ~iwd~~t~~~~~~l~~~  279 (311)
T d1nr0a1         263 KIWNVATLKVEKTIPVG  279 (311)
T ss_dssp             EEEETTTTEEEEEEECC
T ss_pred             EEEECCCCcEEEEEECC
Confidence            99999999999999876

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.5e-28  Score=250.17  Aligned_cols=224  Identities=15%  Similarity=0.198  Sum_probs=183.4

Q ss_pred             EEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG  301 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~  301 (696)
                      ++++|..++....+.++..|+....+.   ..+|...+. +.++|+++.+++++.|+.+++|++++ +.....+..    
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~----  141 (317)
T d1vyhc1          67 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-GYCVKTFTG----  141 (317)
T ss_dssp             ECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-CCEEEEEEC----
T ss_pred             eecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeeccc-ceeeeEEcc----
Confidence            445566666666666555555443322   145666665 99999999999999999999999998 788888888    


Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCC----------------C
Q 005459          302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC----------------K  365 (696)
Q Consensus       302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~----------------~  365 (696)
                          |...+.+++|+||++.|++|+.|+.|++|+...+.....+.++ ...+.++.++|+...                .
T Consensus       142 ----~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (317)
T d1vyhc1         142 ----HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH-RHVVECISWAPESSYSSISEATGSETKKSGKP  216 (317)
T ss_dssp             ----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred             ----CCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecC-CCCceEEEEeeccccceeeccccceeeeeccC
Confidence                9999999999999999999999999999999999999999887 667888888876521                1


Q ss_pred             ccceecce---eeEEEcCCCceEEEEecCCcceEE--EEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCccee
Q 005459          366 YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI  439 (696)
Q Consensus       366 ~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~--~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w  439 (696)
                      ...+++|+   .+.+|+..+++++....+|...|.  ++++ ++.+++++.|+.+++|++..++.               
T Consensus       217 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------------  281 (317)
T d1vyhc1         217 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC---------------  281 (317)
T ss_dssp             CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC---------------
T ss_pred             CceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcE---------------
Confidence            12344444   788999999999999999999884  4455 78899999999999999876654               


Q ss_pred             EEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEE
Q 005459          440 LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD  479 (696)
Q Consensus       440 ~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~  479 (696)
                           ...+.+|..+|.+++|+|||++||+||.||.+ +||
T Consensus       282 -----~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         282 -----MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             -----CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             -----EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence                 56788999999999999999999999999999 996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-28  Score=255.75  Aligned_cols=260  Identities=12%  Similarity=0.111  Sum_probs=192.6

Q ss_pred             CCceEEEEEeCCcEEEEEccCeEEEeecCCcee--eEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEE
Q 005459           20 SSQQIIYFKVNNGLLLIASPCHIELWSSSQHKV--RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQ   97 (696)
Q Consensus        20 ~~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~--~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~   97 (696)
                      +.+..|+|||+|++||++++++|+|||...+..  .+....    ...+.+.+.+++|+|||++||+++.||.|++||+.
T Consensus        52 ~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~----~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          52 EVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLD----CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             SCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEE----CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEee----ecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            456668999999999999999999999863211  111111    11234678899999999999999999999999986


Q ss_pred             ecCcccccCCCCCCCceeeeeeEEEeeecccccccee--EEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCC
Q 005459           98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLS--VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSND  175 (696)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~  175 (696)
                      .......           .      .    +..+...  ..++.+++..+++++.++.+..++........         
T Consensus       128 ~~~~~~~-----------~------~----~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~---------  177 (337)
T d1gxra_         128 APTPRIK-----------A------E----LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR---------  177 (337)
T ss_dssp             CC--EEE-----------E------E----EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE---------
T ss_pred             ccccccc-----------c------c----ccccccccccccccccccccccccccccccccccccccccc---------
Confidence            4332110           0      0    1112222  33456778889999999999886654322110         


Q ss_pred             CcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee--
Q 005459          176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--  253 (696)
Q Consensus       176 ~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--  253 (696)
                                                 ....+...+.+++          ++++|+.+++++.|+.+++||...++..  
T Consensus       178 ---------------------------~~~~~~~~v~~l~----------~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~  220 (337)
T d1gxra_         178 ---------------------------QFQGHTDGASCID----------ISNDGTKLWTGGLDNTVRSWDLREGRQLQQ  220 (337)
T ss_dssp             ---------------------------EECCCSSCEEEEE----------ECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             ---------------------------ccccccccccccc----------ccccccccccccccccccccccccceeecc
Confidence                                       1112334465554          6788999999999999999998776544  


Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEE
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT  332 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~  332 (696)
                      ..|...+. ++|+|++++|++|+.||.|++||++. ... .....        |.+.|++++|+|||++|++|+.||.|+
T Consensus       221 ~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~-~~~-~~~~~--------~~~~i~~v~~s~~g~~l~s~s~Dg~i~  290 (337)
T d1gxra_         221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK-PDK-YQLHL--------HESCVLSLKFAYCGKWFVSTGKDNLLN  290 (337)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-SCE-EEECC--------CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             cccccceEEEEEcccccccceeccccccccccccc-ccc-ccccc--------cccccceEEECCCCCEEEEEeCCCeEE
Confidence            44666666 99999999999999999999999987 443 33445        899999999999999999999999999


Q ss_pred             EEEccCCeeEEEeecccccceecccccCCC
Q 005459          333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      +||+..++.+.++..  ...|.+++|+|++
T Consensus       291 iwd~~~~~~~~~~~~--~~~v~~~~~s~d~  318 (337)
T d1gxra_         291 AWRTPYGASIFQSKE--SSSVLSCDISVDD  318 (337)
T ss_dssp             EEETTTCCEEEEEEC--SSCEEEEEECTTS
T ss_pred             EEECCCCCEEEEccC--CCCEEEEEEeCCC
Confidence            999999988877663  4678889999887

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.3e-28  Score=258.65  Aligned_cols=315  Identities=12%  Similarity=0.112  Sum_probs=211.5

Q ss_pred             ccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--eeCCCeE
Q 005459           68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHM  145 (696)
Q Consensus        68 G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~l  145 (696)
                      .++.+++|+|||++||+++.+|.|+||+++.++.                     .....+.++...|.++  ++++++|
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~---------------------~~~~~l~gH~~~V~~l~fsp~~~~l   66 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---------------------VQVHELKEHNGQVTGVDWAPDSNRI   66 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---------------------EEEEEEECCSSCEEEEEEETTTTEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE---------------------EEEEEecCCCCCEEEEEECCCCCEE
Confidence            5789999999999999999999999999974321                     0111123455566654  5788999


Q ss_pred             EEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEE
Q 005459          146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV  225 (696)
Q Consensus       146 lv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  225 (696)
                      ++++.|+.|++|+++.......                                  .....+...|.++.          
T Consensus        67 ~s~s~D~~i~vWd~~~~~~~~~----------------------------------~~~~~~~~~v~~i~----------  102 (371)
T d1k8kc_          67 VTCGTDRNAYVWTLKGRTWKPT----------------------------------LVILRINRAARCVR----------  102 (371)
T ss_dssp             EEEETTSCEEEEEEETTEEEEE----------------------------------EECCCCSSCEEEEE----------
T ss_pred             EEEECCCeEEEEeecccccccc----------------------------------cccccccccccccc----------
Confidence            9999999999976653221111                                  01112344566665          


Q ss_pred             EEeCCcEEEEeeccCCceeeeeeecce-------ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC--------
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKIDK-------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA--------  289 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~-------~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~--------  289 (696)
                      ++|||+.+++++.++++++|+......       ...|...+. ++|+|++++||+|+.||+|++|+.....        
T Consensus       103 ~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~  182 (371)
T d1k8kc_         103 WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPT  182 (371)
T ss_dssp             ECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCB
T ss_pred             cccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccc
Confidence            678899999999999999998764432       145777766 9999999999999999999999986421        


Q ss_pred             ---------ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccC
Q 005459          290 ---------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP  360 (696)
Q Consensus       290 ---------~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp  360 (696)
                               ..+....        .|.+.|.+++|+|||+.|++|+.|+.|++||+..++.+.++..| ...|.+++|+|
T Consensus       183 ~~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~s~~fs~  253 (371)
T d1k8kc_         183 PWGSKMPFGELMFESS--------SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAVTFIT  253 (371)
T ss_dssp             TTBSCCCTTCEEEECC--------CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS-SCCEEEEEEEE
T ss_pred             cccccccceeeeeecc--------CccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecc-cccceeeeecC
Confidence                     1122222        38999999999999999999999999999999999999999987 66799999999


Q ss_pred             CCCCCccceecce--ee--EEEcCCCceEEEEecCC-cceE--EEEecceeeeeccCCCCceeeeeeecCCeEEEEecCC
Q 005459          361 NQDCKYEPLMSGT--SM--MQWDEYGYRLYAIEEGS-SERV--LIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSED  433 (696)
Q Consensus       361 ~~~~~~~~l~sg~--~~--~~W~~~~~~l~~~~~~~-~~~v--~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~  433 (696)
                      ++    +.+++|.  ..  ..|+.....+.....-. ....  .........  ...+...........           
T Consensus       254 d~----~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----------  316 (371)
T d1k8kc_         254 ES----SLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERF--QNLDKKASSEGSAAA-----------  316 (371)
T ss_dssp             TT----EEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHH--HHCCCCC-------------------
T ss_pred             CC----CEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeE--ecccceeEEeccccc-----------
Confidence            98    8888765  33  34444444432211000 0000  000000000  000000000000000           


Q ss_pred             CCcceeEEeecCeeeecCCCceEEEEEcCCC----CEEEEEeCCccE-EEEccCC
Q 005459          434 TDELKILHLNLPVSYISQNWPVQHVAASKDG----MFLAVAGLHGLI-LYDIRQK  483 (696)
Q Consensus       434 ~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG----~~la~ag~dG~i-~w~~~sg  483 (696)
                                .......|..+|.++++.+++    ..+|++|.||.+ +||+++.
T Consensus       317 ----------~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         317 ----------GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             -----------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             ----------cceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence                      001113588999999998865    369999999999 9999763

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.4e-28  Score=256.54  Aligned_cols=340  Identities=11%  Similarity=0.086  Sum_probs=221.5

Q ss_pred             EEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCC
Q 005459           33 LLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSG  112 (696)
Q Consensus        33 lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~  112 (696)
                      .+...++....+|+...+...-..+.+   .+++.+.+.+++|||||++||+++ ||.|+||++..+........+....
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~  106 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHK---SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN  106 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEE---EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEe---eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccc
Confidence            344456778889996433222112222   234568899999999999999986 8999999987554322222211110


Q ss_pred             ceeeeeeEEEeeeccccccceeEEE--eeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCc
Q 005459          113 LFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGL  190 (696)
Q Consensus       113 ~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l  190 (696)
                      .....     ........+...|.+  ++++++.|++|+.||.|+++++.......                        
T Consensus       107 ~~~~~-----~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~------------------------  157 (388)
T d1erja_         107 KDPEN-----LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM------------------------  157 (388)
T ss_dssp             -----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE------------------------
T ss_pred             ccccc-----cccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccc------------------------
Confidence            00000     000111233445554  56778899999999999986654321110                        


Q ss_pred             ccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcC-
Q 005459          191 ASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAP-  266 (696)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp-  266 (696)
                                  ....+...|.++.          +++++..+++++.++.+++|+.......   ..+...+++.++| 
T Consensus       158 ------------~~~~h~~~v~~~~----------~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  215 (388)
T d1erja_         158 ------------ILQGHEQDIYSLD----------YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG  215 (388)
T ss_dssp             ------------EECCCSSCEEEEE----------ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred             ------------ccccccccccccc----------cccccccccccccceeeeeeeccccccccccccccccccccccCC
Confidence                        1122344566554          6778888888888999999997754432   4455666666655 


Q ss_pred             CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459          267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR  346 (696)
Q Consensus       267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~  346 (696)
                      ++++|++|+.||.|++|+..+ +.....+.... ....+|.++|.+++|+|||+.|++|+.||.|++||+..+.......
T Consensus       216 ~~~~l~~~~~d~~i~i~~~~~-~~~~~~~~~~~-~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  293 (388)
T d1erja_         216 DGKYIAAGSLDRAVRVWDSET-GFLVERLDSEN-ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK  293 (388)
T ss_dssp             TCCEEEEEETTSCEEEEETTT-CCEEEEEC-------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred             CCCeEEEEcCCCeEEEeeccc-Cccceeecccc-ccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccc
Confidence            899999999999999999987 55555443211 1223489999999999999999999999999999997765332221


Q ss_pred             cccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEE--EEec-ceeeeeccCCCCceeeeeeecC
Q 005459          347 QISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVL--IFSF-GKCCLNRGVSGMTYARQVIYGE  423 (696)
Q Consensus       347 ~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~--~~~~-~~~~~s~~~d~~~~~w~~~~~~  423 (696)
                      ..                                ...........|...|.  ++++ ++.+++++.|+++++|++.+++
T Consensus       294 ~~--------------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~  341 (388)
T d1erja_         294 TP--------------------------------NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN  341 (388)
T ss_dssp             -------------------------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred             cc--------------------------------cccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            11                                01122233345666674  4444 7889999999999999987655


Q ss_pred             CeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEE------cCCCCEEEEEeCCccE-EEEcc
Q 005459          424 DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA------SKDGMFLAVAGLHGLI-LYDIR  481 (696)
Q Consensus       424 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~------s~dG~~la~ag~dG~i-~w~~~  481 (696)
                      .                    ...+.+|..+|.++++      +|||++||+||.||.| +|+++
T Consensus       342 ~--------------------~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         342 P--------------------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             E--------------------EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             E--------------------EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            4                    4567899999999875      6799999999999999 99974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=3.7e-27  Score=243.50  Aligned_cols=279  Identities=14%  Similarity=0.148  Sum_probs=196.0

Q ss_pred             hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCC
Q 005459           66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNK  143 (696)
Q Consensus        66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~  143 (696)
                      +.+.+.+++|+||+++||+++.||.|+|||+..+.....                       +..+...|.  ++.+++.
T Consensus        54 H~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~-----------------------~~~~~~~v~~v~~~~~~~  110 (340)
T d1tbga_          54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA-----------------------IPLRSSWVMTCAYAPSGN  110 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE-----------------------EECSCSCEEEEEECTTSS
T ss_pred             CCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEE-----------------------EecccccEEeeEeeccce
Confidence            457899999999999999999999999999864432111                       112233343  4567788


Q ss_pred             eEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceE
Q 005459          144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL  223 (696)
Q Consensus       144 ~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  223 (696)
                      .+++++.++.+..+.+..........          .                      .+..+.....           
T Consensus       111 ~l~~~~~d~~i~~~~~~~~~~~~~~~----------~----------------------~~~~~~~~~~-----------  147 (340)
T d1tbga_         111 YVACGGLDNICSIYNLKTREGNVRVS----------R----------------------ELAGHTGYLS-----------  147 (340)
T ss_dssp             EEEEEETTCCEEEEESSSSCSCCCEE----------E----------------------EECCCSSCEE-----------
T ss_pred             eeeeecccceeecccccccccccccc----------e----------------------eccccccccc-----------
Confidence            99999999999887654332211100          0                      0011111111           


Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      ......+..+.....+.+...+.......   ...+...+. ..+.+...++++|+.|+.|++||+++ ++.+.++.+  
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~-~~~~~~~~~--  224 (340)
T d1tbga_         148 CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-GMCRQTFTG--  224 (340)
T ss_dssp             EEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT-TEEEEEECC--
T ss_pred             ccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCC-CcEEEEEeC--
Confidence            11223344444445555444444322211   133444555 89999999999999999999999988 788888888  


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc-cccceecccccCCCCCCccceecceeeEEE
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGTSMMQW  378 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~-~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W  378 (696)
                            |.++|++++|+|||++|++|+.|+.|++|++........+... +...+.+++|+|+                 
T Consensus       225 ------h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----------------  281 (340)
T d1tbga_         225 ------HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-----------------  281 (340)
T ss_dssp             ------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSS-----------------
T ss_pred             ------CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCC-----------------
Confidence                  9999999999999999999999999999999888776655432 1233444444443                 


Q ss_pred             cCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEE
Q 005459          379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV  458 (696)
Q Consensus       379 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v  458 (696)
                                             ++.+++++.|+.+++|++..++.                    ...+.+|..+|.++
T Consensus       282 -----------------------~~~l~~g~~dg~i~iwd~~~~~~--------------------~~~~~~H~~~V~~l  318 (340)
T d1tbga_         282 -----------------------GRLLLAGYDDFNCNVWDALKADR--------------------AGVLAGHDNRVSCL  318 (340)
T ss_dssp             -----------------------SCEEEEEETTSCEEEEETTTCCE--------------------EEEECCCSSCEEEE
T ss_pred             -----------------------CCEEEEEECCCEEEEEECCCCcE--------------------EEEEcCCCCCEEEE
Confidence                                   34566778888888998765543                    45677899999999


Q ss_pred             EEcCCCCEEEEEeCCccE-EEE
Q 005459          459 AASKDGMFLAVAGLHGLI-LYD  479 (696)
Q Consensus       459 a~s~dG~~la~ag~dG~i-~w~  479 (696)
                      +|+|||++||+||.||.+ +||
T Consensus       319 ~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         319 GVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECTTSSCEEEEETTSCEEEEC
T ss_pred             EEeCCCCEEEEEccCCEEEEeC
Confidence            999999999999999999 997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9.2e-27  Score=246.30  Aligned_cols=290  Identities=16%  Similarity=0.153  Sum_probs=206.0

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC----------CCCCCCCCCeEEEEECCCCCeE
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW----------GYSMDDTGPVSCIAWTPDNSAF  322 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~----------~~~~~h~g~V~~l~~spdg~~l  322 (696)
                      .+|.++|+ ++|||||++||+|+ |++|+|||+.+ ++.+.++.....          .....|...|++|+|+|||++|
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l  136 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSD-GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL  136 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTT-CCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecc-cceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence            46888886 99999999999997 89999999988 666666543221          1123588889999999999999


Q ss_pred             EEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE-EE
Q 005459          323 AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV-LI  398 (696)
Q Consensus       323 asg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v-~~  398 (696)
                      ++|+.||.|++|+...++.+..+.+| ...|.++.+++++    ..+++|.   .+.+|+..+.........+...+ ..
T Consensus       137 ~s~~~dg~v~i~~~~~~~~~~~~~~h-~~~v~~~~~~~~~----~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  211 (388)
T d1erja_         137 ATGAEDRLIRIWDIENRKIVMILQGH-EQDIYSLDYFPSG----DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA  211 (388)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTS----SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred             eecccccccccccccccccccccccc-ccccccccccccc----ccccccccceeeeeeecccccccccccccccccccc
Confidence            99999999999999999999999888 7789999999987    6666665   89999999988887776655554 33


Q ss_pred             Eec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE
Q 005459          399 FSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI  476 (696)
Q Consensus       399 ~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i  476 (696)
                      +.+  ++.+++++.|+.+++|++..+.....+             ........+|..+|.+++|+|+|++||+|+.||.+
T Consensus       212 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~-------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i  278 (388)
T d1erja_         212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERL-------------DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV  278 (388)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEE-------------C------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             ccCCCCCeEEEEcCCCeEEEeecccCccceee-------------ccccccccCCCCCEEEEEECCCCCEEEEEECCCcE
Confidence            433  788999999999999997655431100             00122345789999999999999999999999999


Q ss_pred             -EEEccCCceEecCCccc---------eeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEee-cC
Q 005459          477 -LYDIRQKKWRVFGDITQ---------EQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKS-LL  543 (696)
Q Consensus       477 -~w~~~sg~w~~f~~~~~---------e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~-~~  543 (696)
                       +||+.+++.........         .+...+..++|.  +.+|+++     +.+..|++|+.....   .+.+.+ ..
T Consensus       279 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg-----~~dg~i~vwd~~~~~---~~~~l~~H~  350 (388)
T d1erja_         279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG-----SKDRGVLFWDKKSGN---PLLMLQGHR  350 (388)
T ss_dssp             EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEE-----ETTSEEEEEETTTCC---EEEEEECCS
T ss_pred             EEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEE-----eCCCEEEEEECCCCc---EEEEEeCCC
Confidence             99998765332111000         011225677885  4567766     234689999875221   222222 12


Q ss_pred             CccEEE--------EccCCEEEEEEcCceEEEEEEE
Q 005459          544 AKPIVM--------DVYEDYILVTYRPFDVHIFHVK  571 (696)
Q Consensus       544 ~~~l~~--------~~~~~~llv~~~d~~~~l~~~~  571 (696)
                      .++..+        ++.+.+|++++.|+.|+||+++
T Consensus       351 ~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         351 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            233333        3467788889999999999986

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.6e-26  Score=235.91  Aligned_cols=329  Identities=11%  Similarity=0.072  Sum_probs=215.6

Q ss_pred             EEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCccc
Q 005459           25 IYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI  103 (696)
Q Consensus        25 v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~  103 (696)
                      -.+++||++||+++ |++|+|||.. .+..+..+..      +.+.+.+++|+||+ .|++++.||.|++|++.......
T Consensus        17 tc~~~~~~~l~tgs~Dg~i~vWd~~-~~~~~~~l~~------H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~~~   88 (355)
T d1nexb2          17 TCLQFEDNYVITGADDKMIRVYDSI-NKKFLLQLSG------HDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH   88 (355)
T ss_dssp             EEEEEETTEEEEEETTTEEEEEETT-TTEEEEEEEC------CSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEEEE
T ss_pred             EEEEECCCEEEEEeCCCeEEEEECC-CCcEEEEEEC------CCCCEEEEEEcCCC-EEEEEeccccccccccccccccc
Confidence            35788999999985 6899999995 6566655542      34788999999974 79999999999999986433211


Q ss_pred             ccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCccccccc
Q 005459          104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSH  183 (696)
Q Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~  183 (696)
                      ......                   ...........+++..++.++.|+.+++|+............  . ..  .....
T Consensus        89 ~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~--~-~~--~~~~~  144 (355)
T d1nexb2          89 VFEGHN-------------------STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGE--E-HD--YPLVF  144 (355)
T ss_dssp             EECCCS-------------------SCEEEEEEEEETTEEEEEEEETTSEEEEEECCC--------------C--CCEEE
T ss_pred             cccccc-------------------ccccccccccccccceeeeecCCCcEEEEEccCCceeccccc--c-ce--eccce
Confidence            110000                   000111223344567789999999999866543321111000  0 00  00000


Q ss_pred             ccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeE
Q 005459          184 HFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAV  260 (696)
Q Consensus       184 ~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v  260 (696)
                      .                  ........+..  ............++|+.++++..|+.+++|+....+..   .++....
T Consensus       145 ~------------------~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  204 (355)
T d1nexb2         145 H------------------TPEENPYFVGV--LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI  204 (355)
T ss_dssp             S------------------CTTTCTTEEEE--EECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             e------------------ccccccceeee--eeeccccccccccccceeeeecccceeeeeecccccceeeeecccccc
Confidence            0                  00000111111  11222333456789999999999999999998765443   4455555


Q ss_pred             E-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459          261 C-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC  339 (696)
Q Consensus       261 ~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~  339 (696)
                      . +.++|+++++++++.||+|++|++.+ +..+..+.+        |.++|.+++|+|  ++|++|+.||.|++||+.+.
T Consensus       205 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~--------h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~  273 (355)
T d1nexb2         205 YSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQG--------HTALVGLLRLSD--KFLVSAAADGSIRGWDANDY  273 (355)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEETTT-CCEEEEECC--------CSSCCCEEEECS--SEEEEECTTSEEEEEETTTC
T ss_pred             ccccccccceeeecccccceEEeeeccc-ccccccccc--------cccccccccccc--ceeeeeeccccccccccccc
Confidence            5 99999999999999999999999998 788888888        999999999975  69999999999999999876


Q ss_pred             eeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeee
Q 005459          340 RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQV  419 (696)
Q Consensus       340 ~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~  419 (696)
                      ...  +..| ...+.++.                                        .+++...+++++.|+++++|++
T Consensus       274 ~~~--~~~~-~~~~~~~~----------------------------------------~~~~~~~~l~~g~d~~i~vwd~  310 (355)
T d1nexb2         274 SRK--FSYH-HTNLSAIT----------------------------------------TFYVSDNILVSGSENQFNIYNL  310 (355)
T ss_dssp             CEE--EEEE-CTTCCCCC----------------------------------------EEEECSSEEEEEETTEEEEEET
T ss_pred             cee--cccc-cCCceEEE----------------------------------------EEcCCCCEEEEEeCCEEEEEEC
Confidence            533  3333 11122111                                        1222222334445888999998


Q ss_pred             eecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEE
Q 005459          420 IYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD  479 (696)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~  479 (696)
                      .+++.                   +...+.+|..+|.+++|+|+ .++++++.||.+ +|.
T Consensus       311 ~tg~~-------------------~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         311 RSGKL-------------------VHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             TTCCB-------------------CCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             CCCCE-------------------EEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence            77654                   22345689999999999997 478889999987 654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=1.1e-26  Score=236.86  Aligned_cols=279  Identities=13%  Similarity=0.136  Sum_probs=186.0

Q ss_pred             hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEee--eCCC
Q 005459           66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--SDNK  143 (696)
Q Consensus        66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~--~~~~  143 (696)
                      +.+.+.+++|+|||++||+++.||+|++||++.+......                      ...+...|+++.  +++ 
T Consensus        11 H~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~----------------------~~~h~~~v~~v~~~~~g-   67 (299)
T d1nr0a2          11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF----------------------PDVHATMITGIKTTSKG-   67 (299)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS----------------------SCSCSSCEEEEEECTTS-
T ss_pred             CCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE----------------------cCCCCCcEEEEEeeccc-
Confidence            3477899999999999999999999999998654321111                      122334455543  343 


Q ss_pred             eEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceE
Q 005459          144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL  223 (696)
Q Consensus       144 ~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  223 (696)
                      .+++++.|+.+++|...........                                 .........+..          
T Consensus        68 ~~~~~~~d~~v~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~----------  104 (299)
T d1nr0a2          68 DLFTVSWDDHLKVVPAGGSGVDSSK---------------------------------AVANKLSSQPLG----------  104 (299)
T ss_dssp             CEEEEETTTEEEEECSSSSSSCTTS---------------------------------CCEEECSSCEEE----------
T ss_pred             eeecccceeeEEEeccCCccccccc---------------------------------cccccccccccc----------
Confidence            5778888999987543322111000                                 000011222333          


Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceee-EEeeccCCC
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIR-TVSLYDWGY  302 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~-~~~~~~~~~  302 (696)
                      +.+++||+.++++. ++.+++|+..............+++|+|++++|++|+.||.|++||+++ .+... ....     
T Consensus       105 ~~~s~~g~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~-~~~~~~~~~~-----  177 (299)
T d1nr0a2         105 LAVSADGDIAVAAC-YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG-ASVSEVKTIV-----  177 (299)
T ss_dssp             EEECTTSSCEEEEE-SSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET-TEEEEEEEEE-----
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc-----
Confidence            34678888766554 4568888755443333334456699999999999999999999999987 44333 2334     


Q ss_pred             CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEE---eecccccceecccccCCCCCCccceecceeeEEEc
Q 005459          303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST---IRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWD  379 (696)
Q Consensus       303 ~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~---l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~  379 (696)
                         |.++|++++|+|++++|++|+.|+.|++||+.++.....   +.+| ...|++++|+|+                  
T Consensus       178 ---~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~~------------------  235 (299)
T d1nr0a2         178 ---HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH-TAKVACVSWSPD------------------  235 (299)
T ss_dssp             ---CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC-SSCEEEEEECTT------------------
T ss_pred             ---cccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc------------------
Confidence               899999999999999999999999999999987654322   2222 333444444433                  


Q ss_pred             CCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee--ecCCCceEE
Q 005459          380 EYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY--ISQNWPVQH  457 (696)
Q Consensus       380 ~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~I~~  457 (696)
                                            ++.+++++.|+.+++|++..+...                   +...  ..+..+|.+
T Consensus       236 ----------------------~~~l~sgs~dg~i~iwd~~~~~~~-------------------~~~~~~~~~~~~v~~  274 (299)
T d1nr0a2         236 ----------------------NVRLATGSLDNSVIVWNMNKPSDH-------------------PIIIKGAHAMSSVNS  274 (299)
T ss_dssp             ----------------------SSEEEEEETTSCEEEEETTCTTSC-------------------CEEETTSSTTSCEEE
T ss_pred             ----------------------ccceEEEcCCCEEEEEECCCCCcc-------------------eEEEecCCCCCcEEE
Confidence                                  445677888899999988766542                   1111  134456766


Q ss_pred             EEEcCCCCEEEEEeCCccE-EEEcc
Q 005459          458 VAASKDGMFLAVAGLHGLI-LYDIR  481 (696)
Q Consensus       458 va~s~dG~~la~ag~dG~i-~w~~~  481 (696)
                      ++ ++++++|++||.||.+ +||+.
T Consensus       275 ~~-~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         275 VI-WLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EE-EEETTEEEEEETTSCEEEEECC
T ss_pred             EE-ECCCCEEEEEeCCCEEEEEecc
Confidence            64 5678899999999999 99973

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=2.5e-26  Score=234.18  Aligned_cols=278  Identities=12%  Similarity=0.104  Sum_probs=200.9

Q ss_pred             ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459          253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL  331 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v  331 (696)
                      +.||.++|. ++|+|++++||+|+.||+|++||+++ ++..+.+..       .|.+.|++++|+|||+. ++++.|+++
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~-~~~~~~~~~-------~h~~~v~~v~~~~~g~~-~~~~~d~~v   78 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPD-------VHATMITGIKTTSKGDL-FTVSWDDHL   78 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECSSC-------SCSSCEEEEEECTTSCE-EEEETTTEE
T ss_pred             cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCC-CcEEEEEcC-------CCCCcEEEEEeecccee-ecccceeeE
Confidence            479999998 99999999999999999999999987 666665542       38999999999999975 556678999


Q ss_pred             EEEEccCCeeE---EEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEecCCcceEEEEec-ceee
Q 005459          332 TVWSVSGCRLM---STIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCC  405 (696)
Q Consensus       332 ~vW~~~~~~~~---~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~  405 (696)
                      ++|+..+....   .....+ ...+.+++++|++    +.++.+.  .+.+|+..  +.......+....+++++ ++.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~g----~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l  151 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKL-SSQPLGLAVSADG----DIAVAACYKHIAIYSHG--KLTEVPISYNSSCVALSNDKQFV  151 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEEC-SSCEEEEEECTTS----SCEEEEESSEEEEEETT--EEEEEECSSCEEEEEECTTSCEE
T ss_pred             EEeccCCccccccccccccc-ccccccccccccc----ccccccccccccccccc--ccccccccccccccccccccccc
Confidence            99998654321   111122 4567888999988    6666555  78888754  444444555566678888 8889


Q ss_pred             eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       406 ~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                      ++++.|+.+++|++..+...                   ......|..+|.+++|+|+|++|++++.||.+ +||+.+++
T Consensus       152 ~~g~~dg~i~~~d~~~~~~~-------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~  212 (299)
T d1nr0a2         152 AVGGQDSKVHVYKLSGASVS-------------------EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF  212 (299)
T ss_dssp             EEEETTSEEEEEEEETTEEE-------------------EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT
T ss_pred             cccccccccccccccccccc-------------------ccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999998654431                   22345788899999999999999999999999 99999876


Q ss_pred             eEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccE--EEEccCCEEEEEE
Q 005459          485 WRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPI--VMDVYEDYILVTY  560 (696)
Q Consensus       485 w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l--~~~~~~~~llv~~  560 (696)
                      ..........+.-.+.+++|.  ++.++++     +.+..|++|+.+............-...++  ...+.+++|++++
T Consensus       213 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~sg-----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s  287 (299)
T d1nr0a2         213 ELAHTNSWTFHTAKVACVSWSPDNVRLATG-----SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG  287 (299)
T ss_dssp             EESCCCCCCCCSSCEEEEEECTTSSEEEEE-----ETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEE
T ss_pred             cccccccccccccccccccccccccceEEE-----cCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEe
Confidence            543322222223347788886  4466665     234679999875222221222111122223  3345788999999


Q ss_pred             cCceEEEEEE
Q 005459          561 RPFDVHIFHV  570 (696)
Q Consensus       561 ~d~~~~l~~~  570 (696)
                      .|+.|++|++
T Consensus       288 ~D~~i~iWdl  297 (299)
T d1nr0a2         288 QDSNIKFWNV  297 (299)
T ss_dssp             TTSCEEEEEC
T ss_pred             CCCEEEEEec
Confidence            9999999986

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=9.3e-27  Score=246.13  Aligned_cols=229  Identities=15%  Similarity=0.145  Sum_probs=181.7

Q ss_pred             EEEEEeCCcEEEEeeccCCceeeeeeecc-----eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEe
Q 005459          223 LFVLYSNGQLMSCSVSKKGLKLAEFIKID-----KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVS  296 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~  296 (696)
                      +++++|||+.+++++.++.+++|+....+     .+.+|.++|. ++|+|++++||+|+.|++|+|||+++ ......+.
T Consensus        12 ~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~-~~~~~~~~   90 (371)
T d1k8kc_          12 CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG-RTWKPTLV   90 (371)
T ss_dssp             EEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET-TEEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc-cccccccc
Confidence            35588999999999999999999986442     1368999988 99999999999999999999999986 44333332


Q ss_pred             eccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeE----EEeecccccceecccccCCCCCCccceecc
Q 005459          297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM----STIRQISLSSISSPIVKPNQDCKYEPLMSG  372 (696)
Q Consensus       297 ~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~----~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg  372 (696)
                      ..      +|..+|.+++|+|||+.|++|+.|+++++|++......    ...+.| ...|.+++|+|++    +.+++|
T Consensus        91 ~~------~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~p~~----~~l~s~  159 (371)
T d1k8kc_          91 IL------RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI-RSTVLSLDWHPNS----VLLAAG  159 (371)
T ss_dssp             CC------CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC-CSCEEEEEECTTS----SEEEEE
T ss_pred             cc------cccccccccccccccccceeecccCcceeeeeeccccccccccccccc-ccccccccccccc----cceecc
Confidence            21      28899999999999999999999999999998765432    223334 6789999999998    888888


Q ss_pred             e---eeEEEcCCC------------------ceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEE
Q 005459          373 T---SMMQWDEYG------------------YRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLV  428 (696)
Q Consensus       373 ~---~~~~W~~~~------------------~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~  428 (696)
                      +   ++++|+...                  ++++....+|...+  ++|++ ++.+++++.|+++++|++..+..    
T Consensus       160 s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~----  235 (371)
T d1k8kc_         160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA----  235 (371)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE----
T ss_pred             ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccc----
Confidence            7   889998753                  34666667788888  45556 88899999999999999876554    


Q ss_pred             EecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459          429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       429 ~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~  484 (696)
                                      ...+..|+.||.+++|+|||++||+|. |+.+ +|......
T Consensus       236 ----------------~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~  275 (371)
T d1k8kc_         236 ----------------VATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAA  275 (371)
T ss_dssp             ----------------EEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTT
T ss_pred             ----------------eeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCC
Confidence                            456778999999999999999998766 5544 65554443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=6.1e-26  Score=230.68  Aligned_cols=272  Identities=15%  Similarity=0.208  Sum_probs=214.4

Q ss_pred             ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459          253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL  331 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v  331 (696)
                      +.||.++|. ++|+|++++||+|+.||+|+|||+.+ ++.++++.+        |.++|.+++|+|++..++++..++.+
T Consensus        13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~-~~~~~~~~~--------h~~~V~~~~~~~~~~~~~~~~~~~~~   83 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET-GDFERTLKG--------HTDSVQDISFDHSGKLLASCSADMTI   83 (317)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTT-CCCCEEECC--------CSSCEEEEEECTTSSEEEEEETTSCC
T ss_pred             EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCC-CCEEEEEeC--------CCCcEEEEeeeccccccccccccccc
Confidence            478999887 99999999999999999999999998 888889988        99999999999999999999999999


Q ss_pred             EEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEE--ec-ceee
Q 005459          332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GKCC  405 (696)
Q Consensus       332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~--~~-~~~~  405 (696)
                      .+|+.........+.+| ...+.++.++|++    +.++++.   .+.+|+..+++......+|...+..+  ++ ++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  158 (317)
T d1vyhc1          84 KLWDFQGFECIRTMHGH-DHNVSSVSIMPNG----DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI  158 (317)
T ss_dssp             CEEETTSSCEEECCCCC-SSCEEEEEECSSS----SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccccccc-cccceeeeccCCC----ceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEE
Confidence            99999988888777777 6778899999998    7777776   88999999999999888888887444  44 7889


Q ss_pred             eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCC--------------------CC
Q 005459          406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD--------------------GM  465 (696)
Q Consensus       406 ~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~d--------------------G~  465 (696)
                      ++++.|+.+++|++..+..                    ...+.+|..++.+++++|+                    +.
T Consensus       159 ~~~~~d~~v~~~~~~~~~~--------------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (317)
T d1vyhc1         159 ASCSNDQTVRVWVVATKEC--------------------KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP  218 (317)
T ss_dssp             EEEETTSCEEEEETTTCCE--------------------EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CC
T ss_pred             EEEeCCCeEEEEeecccee--------------------eEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCc
Confidence            9999999999999766554                    2344456666666666654                    56


Q ss_pred             EEEEEeCCccE-EEEccCCceEe-cCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC--CCCccceeEE
Q 005459          466 FLAVAGLHGLI-LYDIRQKKWRV-FGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCR  539 (696)
Q Consensus       466 ~la~ag~dG~i-~w~~~sg~w~~-f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~--~l~~~~~~~~  539 (696)
                      ++++|+.||.+ +|+..+++... +.  .  +.-.+..++|.  +++++++     +.+..|++|+..  .+......|.
T Consensus       219 ~~~~~~~d~~i~~~~~~~~~~~~~~~--~--~~~~v~~~~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~h~  289 (317)
T d1vyhc1         219 FLLSGSRDKTIKMWDVSTGMCLMTLV--G--HDNWVRGVLFHSGGKFILSC-----ADDKTLRVWDYKNKRCMKTLNAHE  289 (317)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEE--C--CSSCEEEEEECSSSSCEEEE-----ETTTEEEEECCTTSCCCEEEECCS
T ss_pred             eeEeccCCCEEEEEECCCCcEEEEEe--C--CCCCEEEEEECCCCCEEEEE-----ECCCeEEEEECCCCcEEEEEcCCC
Confidence            89999999999 99999987432 11  1  12236778886  4466666     234689999875  2222211222


Q ss_pred             eecCCccEEEEccCCEEEEEEcCceEEEEE
Q 005459          540 KSLLAKPIVMDVYEDYILVTYRPFDVHIFH  569 (696)
Q Consensus       540 ~~~~~~~l~~~~~~~~llv~~~d~~~~l~~  569 (696)
                      ..+.+  +.+++.+++|++++.|+.|+||+
T Consensus       290 ~~V~~--~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         290 HFVTS--LDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEE--EEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCEEE--EEEcCCCCEEEEEeCCCeEEEeC
Confidence            22222  56678889999999999999994

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.6e-25  Score=226.33  Aligned_cols=308  Identities=13%  Similarity=0.136  Sum_probs=215.0

Q ss_pred             EEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccc
Q 005459           26 YFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQ  104 (696)
Q Consensus        26 ~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~  104 (696)
                      .+++||++||+++ |++|+|||.. .+.++..+..      +.+.+.+++|+|+  .|++++.|+.+++|+.........
T Consensus        22 ~~~~~g~~l~sgs~Dg~i~vWd~~-~~~~~~~~~~------h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~   92 (342)
T d2ovrb2          22 CLQFCGNRIVSGSDDNTLKVWSAV-TGKCLRTLVG------HTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHT   92 (342)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETT-TCCEEEECCC------CSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEECCCEEEEEeCCCeEEEEECC-CCCEEEEEeC------CCCCEEEEEeCCC--ccccceecccccccccccccceec
Confidence            4889999999985 7799999995 6555554432      3477889999986  999999999999999753221110


Q ss_pred             cCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccc
Q 005459          105 IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHH  184 (696)
Q Consensus       105 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~  184 (696)
                      .                       ......+.........+..+..++.+..++...  .....                
T Consensus        93 ~-----------------------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~--~~~~~----------------  131 (342)
T d2ovrb2          93 L-----------------------YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET--GQCLH----------------  131 (342)
T ss_dssp             E-----------------------CCCSSCEEEEEEETTEEEEEETTSEEEEEESSS--CCEEE----------------
T ss_pred             c-----------------------cccceeEeeeecccccccccccceeEEEeeccc--cccee----------------
Confidence            0                       111123334444567788888889887754332  11110                


Q ss_pred             cCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE
Q 005459          185 FPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC  261 (696)
Q Consensus       185 s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~  261 (696)
                                                  .  +................++.++.++.+++|+....+..   .+|.... 
T Consensus       132 ----------------------------~--~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-  180 (342)
T d2ovrb2         132 ----------------------------V--LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV-  180 (342)
T ss_dssp             ----------------------------E--EECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE-
T ss_pred             ----------------------------e--eecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCccccc-
Confidence                                        0  00011111234566777888888999999998765433   4555443 


Q ss_pred             EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee
Q 005459          262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL  341 (696)
Q Consensus       262 v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~  341 (696)
                      ..+++++..|++|+.||+|++||++. .+.++.+..        |...|.++++++  ++|++|+.|+.|++||+...+.
T Consensus       181 ~~~~~~~~~l~s~~~dg~i~~~d~~~-~~~~~~~~~--------~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~  249 (342)
T d2ovrb2         181 YSLQFDGIHVVSGSLDTSIRVWDVET-GNCIHTLTG--------HQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQC  249 (342)
T ss_dssp             EEEEECSSEEEEEETTSCEEEEETTT-CCEEEEECC--------CCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCE
T ss_pred             ccccCCCCEEEEEeCCCeEEEeeccc-ceeeeEecc--------cccceeEEecCC--CEEEEEcCCCEEEEEecccccc
Confidence            45566889999999999999999988 788888887        999999888765  6999999999999999988776


Q ss_pred             EEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeee
Q 005459          342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVI  420 (696)
Q Consensus       342 ~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~  420 (696)
                      ...+..+.                                         .|...+..+.+ ++.+++++.|+++++|++.
T Consensus       250 ~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         250 LQTLQGPN-----------------------------------------KHQSAVTCLQFNKNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             EEEECSTT-----------------------------------------SCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred             cccccccc-----------------------------------------eeeeceeecccCCCeeEEEcCCCEEEEEECC
Confidence            66655431                                         12223333444 4567888899999999987


Q ss_pred             ecCCeEEEEecCCCCcceeEEeecCe-eeecCCCceEEEEEcCCCCEEEEEeCCcc----E-EEEccC
Q 005459          421 YGEDRLLVVQSEDTDELKILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGL----I-LYDIRQ  482 (696)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~I~~va~s~dG~~la~ag~dG~----i-~w~~~s  482 (696)
                      +++.-.                .++. ...+|..+|.+++|+|+|+++|+|+.||+    + +||++.
T Consensus       289 tg~~i~----------------~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         289 TGEFIR----------------NLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             TCCEEE----------------EEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCEEE----------------EEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            665410                0111 12368889999999999999999999995    7 998753

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.1e-25  Score=232.35  Aligned_cols=274  Identities=9%  Similarity=0.085  Sum_probs=197.7

Q ss_pred             eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc
Q 005459          252 KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG  330 (696)
Q Consensus       252 ~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~  330 (696)
                      .+.||.+.|. ++|+|++++||+|+.||+|+|||+.+ ++.+..+..        |.++|.+++|+|+|+++++|+.|+.
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~-~~~~~~~~~--------~~~~v~~v~~~~~~~~l~~~~~d~~  120 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT-TNKVHAIPL--------RSSWVMTCAYAPSGNYVACGGLDNI  120 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT-TEEEEEEEC--------SCSCEEEEEECTTSSEEEEEETTCC
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccc-ceeEEEEec--------ccccEEeeEeeccceeeeeecccce
Confidence            3579999988 99999999999999999999999998 788888888        9999999999999999999999999


Q ss_pred             EEEEEccCCe----eEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEecCCcceEE--EEec-
Q 005459          331 LTVWSVSGCR----LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVL--IFSF-  401 (696)
Q Consensus       331 v~vW~~~~~~----~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v~--~~~~-  401 (696)
                      +++|+.....    ....+.+| ..........++.    .......  ....|.............+...+.  .+.+ 
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (340)
T d1tbga_         121 CSIYNLKTREGNVRVSRELAGH-TGYLSCCRFLDDN----QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD  195 (340)
T ss_dssp             EEEEESSSSCSCCCEEEEECCC-SSCEEEEEEEETT----EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTT
T ss_pred             eecccccccccccccceecccc-ccccccccccccc----ccccccccccccccccccccccccccccceeEeeeccccc
Confidence            9999976543    34455554 2222222222221    1111111  556666666665555555555553  3333 


Q ss_pred             ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459          402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       402 ~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~  480 (696)
                      ...+++++.|+.+++|++..+..                    ...+.+|..+|.+++|+|+|++||+|+.||.+ +|++
T Consensus       196 ~~~~~~~~~d~~v~i~d~~~~~~--------------------~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~  255 (340)
T d1tbga_         196 TRLFVSGACDASAKLWDVREGMC--------------------RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL  255 (340)
T ss_dssp             SSEEEEEETTTEEEEEETTTTEE--------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cceeEEeecCceEEEEECCCCcE--------------------EEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEee
Confidence            77789999999999999765543                    45677899999999999999999999999999 9999


Q ss_pred             cCCceEe-cCCccceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeec-CCcc--EEEEccCC
Q 005459          481 RQKKWRV-FGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSL-LAKP--IVMDVYED  554 (696)
Q Consensus       481 ~sg~w~~-f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~-~~~~--l~~~~~~~  554 (696)
                      ...+... +....  ....+..++|.+  ++++++     +.+..|++|+.....   .+....- ..++  +.+++++.
T Consensus       256 ~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~g-----~~dg~i~iwd~~~~~---~~~~~~~H~~~V~~l~~s~d~~  325 (340)
T d1tbga_         256 RADQELMTYSHDN--IICGITSVSFSKSGRLLLAG-----YDDFNCNVWDALKAD---RAGVLAGHDNRVSCLGVTDDGM  325 (340)
T ss_dssp             TTTEEEEEECCTT--CCSCEEEEEECSSSCEEEEE-----ETTSCEEEEETTTCC---EEEEECCCSSCEEEEEECTTSS
T ss_pred             ccccccccccccc--ccCceEEEEECCCCCEEEEE-----ECCCEEEEEECCCCc---EEEEEcCCCCCEEEEEEeCCCC
Confidence            8876432 22222  223367788864  466665     234679999875221   2222211 2222  56678888


Q ss_pred             EEEEEEcCceEEEEE
Q 005459          555 YILVTYRPFDVHIFH  569 (696)
Q Consensus       555 ~llv~~~d~~~~l~~  569 (696)
                      +|++++.|+.|+||+
T Consensus       326 ~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         326 AVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEETTSCEEEEC
T ss_pred             EEEEEccCCEEEEeC
Confidence            999999999999995

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=1.4e-24  Score=226.19  Aligned_cols=302  Identities=12%  Similarity=0.039  Sum_probs=195.9

Q ss_pred             EEEEe-CCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCc--EEEEEEEEecCc
Q 005459           25 IYFKV-NNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSL--YLHIFKVQITEK  101 (696)
Q Consensus        25 v~fs~-dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg--~l~l~~l~~~~~  101 (696)
                      -.||| ||+++|+++.+.|+||+.. .+.. ...       .+.+.+.+++|||||+.|++++.++  .|++|+++.+..
T Consensus         8 ~~fSP~dG~~~a~~~~g~v~v~d~~-~~~~-~~~-------~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~   78 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSRGQAFIQDVS-GTYV-LKV-------PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA   78 (360)
T ss_dssp             EEEEECGGGCEEEEETTEEEEECTT-SSBE-EEC-------SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             ccccCCCCCEEEEEECCeEEEEECC-CCcE-EEc-------cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE
Confidence            46999 9999999999999999996 3322 211       2346788999999999999877653  678887653221


Q ss_pred             ccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCccccc
Q 005459          102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAAL  181 (696)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~  181 (696)
                      ..                                                       +.                     
T Consensus        79 ~~-------------------------------------------------------~~---------------------   82 (360)
T d1k32a3          79 EK-------------------------------------------------------FE---------------------   82 (360)
T ss_dssp             EE-------------------------------------------------------CC---------------------
T ss_pred             EE-------------------------------------------------------ee---------------------
Confidence            00                                                       00                     


Q ss_pred             ccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCC
Q 005459          182 SHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGD  258 (696)
Q Consensus       182 ~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~  258 (696)
                                              .+...+..+          +++|||+.++++..++.+.+|+....+..   ..|..
T Consensus        83 ------------------------~~~~~v~~~----------~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (360)
T d1k32a3          83 ------------------------ENLGNVFAM----------GVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREA  128 (360)
T ss_dssp             ------------------------CCCCSEEEE----------EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSS
T ss_pred             ------------------------CCCceEEee----------eecccccccceeccccccccccccccceeeeeecccc
Confidence                                    001112222          25566666666666666666665543322   34444


Q ss_pred             eEE-EEEcCCCcEEEEEe----------cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459          259 AVC-ASIAPEQQILAVGT----------RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK  327 (696)
Q Consensus       259 ~v~-v~~sp~~~~la~g~----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~  327 (696)
                      .+. ++|+|||++||.+.          .++.+++|++.. ++ ...+..        |...+..++|+|||+.|++++.
T Consensus       129 ~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~-~~-~~~~~~--------~~~~~~~~~~spdg~~l~~~s~  198 (360)
T d1k32a3         129 MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-RK-IFAATT--------ENSHDYAPAFDADSKNLYYLSY  198 (360)
T ss_dssp             CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-TE-EEECSC--------SSSBEEEEEECTTSCEEEEEES
T ss_pred             cccchhhccceeeeeeeccccccceeeccccceeeecccc-Cc-eeeecc--------cccccccccccCCCCEEEEEeC
Confidence            554 88889988888654          455789999876 33 333334        6788999999999999999999


Q ss_pred             CCcEEEEEccCCee-------EEEeecccccceecccccCCCCCCccceecc------e--eeEEEcCCCceEEEEecCC
Q 005459          328 SRGLTVWSVSGCRL-------MSTIRQISLSSISSPIVKPNQDCKYEPLMSG------T--SMMQWDEYGYRLYAIEEGS  392 (696)
Q Consensus       328 Dg~v~vW~~~~~~~-------~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg------~--~~~~W~~~~~~l~~~~~~~  392 (696)
                      |+.+++|+......       ...+..+ ...+..+.++|++    ..+.++      .  .+..+...++...... .+
T Consensus       199 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  272 (360)
T d1k32a3         199 RSLDPSPDRVVLNFSFEVVSKPFVIPLI-PGSPNPTKLVPRS----MTSEAGEYDLNDMYKRSSPINVDPGDYRMII-PL  272 (360)
T ss_dssp             CCCCCEECSSSSCEECCSCBEEEEEESS-TTCCCGGGCCCGG----GSCCCCCCCCTTGGGGCEECSCCCBCEEEEE-EC
T ss_pred             CCceEcccccccceeeccccceEEEecc-cCccccceECCCc----CcccccceeecccccceeecccCcCceeEee-ec
Confidence            99999999754432       2223333 3446667777776    332222      1  2333444444432222 22


Q ss_pred             cceEEEEec------ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCE
Q 005459          393 SERVLIFSF------GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMF  466 (696)
Q Consensus       393 ~~~v~~~~~------~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~  466 (696)
                      .+.+..+.+      ...+++++.++.+++|++..++.                        ..|.+.|.+++|||||++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------------------------~~~~~~v~~~~~SpDG~~  328 (360)
T d1k32a3         273 ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV------------------------TEVKNNLTDLRLSADRKT  328 (360)
T ss_dssp             SSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE------------------------EEEEEEEEEEEECTTSCE
T ss_pred             CCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE------------------------EEecCCcCEEEECCCCCE
Confidence            333322222      34567788888899998654332                        123446899999999999


Q ss_pred             EEEEeCCccE-EEEccCCce
Q 005459          467 LAVAGLHGLI-LYDIRQKKW  485 (696)
Q Consensus       467 la~ag~dG~i-~w~~~sg~w  485 (696)
                      ||+++.||.+ +||+++++.
T Consensus       329 l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         329 VMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             EEEEETTSCEEEEESSCTTS
T ss_pred             EEEEECCCeEEEEECCCCCc
Confidence            9999999999 999998753

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.3e-23  Score=217.18  Aligned_cols=318  Identities=11%  Similarity=0.079  Sum_probs=221.3

Q ss_pred             ccccce-eEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCC
Q 005459          128 FAEKGL-SVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP  206 (696)
Q Consensus       128 ~~~~~~-~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~  206 (696)
                      +.+|.. .++|++++++.|++|+.||.|++|+...  ....                                  ..+..
T Consensus         8 L~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~--~~~~----------------------------------~~l~~   51 (355)
T d1nexb2           8 LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSIN--KKFL----------------------------------LQLSG   51 (355)
T ss_dssp             EECCSSSCEEEEEEETTEEEEEETTTEEEEEETTT--TEEE----------------------------------EEEEC
T ss_pred             ECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCC--CcEE----------------------------------EEEEC
Confidence            445544 3678999999999999999999865432  2111                                  01224


Q ss_pred             CcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-----cCCCCeEE-EEEcCCCcEEEEEecCCeE
Q 005459          207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAPEQQILAVGTRRGVV  280 (696)
Q Consensus       207 ~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~-v~~sp~~~~la~g~~dg~v  280 (696)
                      |...|.+++          ++++ ..+++++.|+++++|+....+..     ..+..... ..++++++++++|+.||+|
T Consensus        52 H~~~V~~l~----------~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  120 (355)
T d1nexb2          52 HDGGVWALK----------YAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL  120 (355)
T ss_dssp             CSSCEEEEE----------EETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEE
T ss_pred             CCCCEEEEE----------EcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcE
Confidence            556677765          5554 46888899999999997755432     12222233 7888999999999999999


Q ss_pred             EEEEccCCCceeeEEeeccC-------C--------CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEe
Q 005459          281 ELYDLAESASLIRTVSLYDW-------G--------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI  345 (696)
Q Consensus       281 ~vw~~~~~~~~~~~~~~~~~-------~--------~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l  345 (696)
                      ++|++.. ............       +        ....|...|.  .+.++|+.++++..|+.+++||+.+++.+...
T Consensus       121 ~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  197 (355)
T d1nexb2         121 HVWKLPK-ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL  197 (355)
T ss_dssp             EEEECCC------------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEccC-Cceeccccccceeccceeccccccceeeeeeecccccc--ccccccceeeeecccceeeeeecccccceeee
Confidence            9999976 322211111000       0        0012444444  45678999999999999999999999988888


Q ss_pred             ecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeee
Q 005459          346 RQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIY  421 (696)
Q Consensus       346 ~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~  421 (696)
                      .++ ...+.+..++|++    ..++++.   ++++|+..+++++....+|...|.++.+ .+.+++++.|+++++|++.+
T Consensus       198 ~~~-~~~~~~~~~~~~~----~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~  272 (355)
T d1nexb2         198 SGH-TDRIYSTIYDHER----KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND  272 (355)
T ss_dssp             CCC-SSCEEEEEEETTT----TEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTT
T ss_pred             ecc-ccccccccccccc----eeeecccccceEEeeeccccccccccccccccccccccccceeeeeecccccccccccc
Confidence            876 5668888999988    7777665   8899999999999999999999977777 78899999999999999765


Q ss_pred             cCCeEEEEecCCCCcceeEEeecCeeeecCCCceEE-EEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEE
Q 005459          422 GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH-VAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQS  499 (696)
Q Consensus       422 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~-va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v  499 (696)
                      ...                      .+..|...+.+ .+++++++++++|+ ||.+ +||+++|+........+  .-.|
T Consensus       273 ~~~----------------------~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~--~~~V  327 (355)
T d1nexb2         273 YSR----------------------KFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKD--ADQI  327 (355)
T ss_dssp             CCE----------------------EEEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTT--CSEE
T ss_pred             cce----------------------ecccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCC--CCCE
Confidence            433                      23344555555 46778888777665 8889 99999987431111112  2347


Q ss_pred             EeEeeeCcEEEEEEeecCCCeEEEEEee
Q 005459          500 KGLLWLGKIIVVCNYIDSSNTYELLFYP  527 (696)
Q Consensus       500 ~~~~w~~~~lv~~~~~~~~~~~~lr~y~  527 (696)
                      ..++|.++.+++++..  ++.-.|.+|+
T Consensus       328 ~~v~~~~~~~~~~~s~--dg~~~l~~~d  353 (355)
T d1nexb2         328 WSVNFKGKTLVAAVEK--DGQSFLEILD  353 (355)
T ss_dssp             EEEEEETTEEEEEEES--SSCEEEEEEE
T ss_pred             EEEEEcCCeEEEEEEC--CCcEEEEEEe
Confidence            7899999988876442  2323455554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=6.4e-24  Score=219.90  Aligned_cols=273  Identities=18%  Similarity=0.131  Sum_probs=192.0

Q ss_pred             EEEeCCcEEEEeeccC-Cceeeeeeecc-----eecCCC-CeEE-EEEcC--CCcEEEEEecCCeEEEEEccCCCceeeE
Q 005459          225 VLYSNGQLMSCSVSKK-GLKLAEFIKID-----KELGSG-DAVC-ASIAP--EQQILAVGTRRGVVELYDLAESASLIRT  294 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~-~~~~~~~~~~~-----~~~~~~-~~v~-v~~sp--~~~~la~g~~dg~v~vw~~~~~~~~~~~  294 (696)
                      .+.|+|+.++.++.+. .++.|+....+     ...+|. ..+. ++|+|  ++++||+|+.||+|++||+.. .+....
T Consensus        24 ~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~-~~~~~~  102 (325)
T d1pgua1          24 SYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF-DKESNS  102 (325)
T ss_dssp             EEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE-EGGGTE
T ss_pred             EECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC-Ccceee
Confidence            3667777777665433 24556543221     125664 5565 99998  678999999999999999976 332222


Q ss_pred             EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc--CCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecc
Q 005459          295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK--SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG  372 (696)
Q Consensus       295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~--Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg  372 (696)
                      +..........|.++|.+++|+|||+.|++++.  |+.+++|+...++++.++.+| ...|++++|+|++.   ..++++
T Consensus       103 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~---~~~~~~  178 (325)
T d1pgua1         103 VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGH-SQRINACHLKQSRP---MRSMTV  178 (325)
T ss_dssp             EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSC-SSCEEEEEECSSSS---CEEEEE
T ss_pred             eecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeec-cccccccccccccc---ceEEEe
Confidence            211000000128999999999999999988764  678999999999999999988 77899999999872   235555


Q ss_pred             e---eeEEEcCCCceEEEEec---CCcceE--EEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEe
Q 005459          373 T---SMMQWDEYGYRLYAIEE---GSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL  442 (696)
Q Consensus       373 ~---~~~~W~~~~~~l~~~~~---~~~~~v--~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~  442 (696)
                      +   .+++|+....+......   +|...|  ++|++  ++.+++++.|+.+++|++.+++.                  
T Consensus       179 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~------------------  240 (325)
T d1pgua1         179 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF------------------  240 (325)
T ss_dssp             ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE------------------
T ss_pred             ecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccc------------------
Confidence            4   78999998877766553   455667  45555  57899999999999999766553                  


Q ss_pred             ecCeeeecCCCceEEEEEc---CCCCEEEEEeCCccE-EEEccCCceE-ecCCccceeeeEEEeEeeeCc-EEEEEEeec
Q 005459          443 NLPVSYISQNWPVQHVAAS---KDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWLGK-IIVVCNYID  516 (696)
Q Consensus       443 ~~~~~~~~~~~~I~~va~s---~dG~~la~ag~dG~i-~w~~~sg~w~-~f~~~~~e~~~~v~~~~w~~~-~lv~~~~~~  516 (696)
                        ...+.+|..++..+.|+   |||++|++++.||.+ +||+++++.. .+....++......++.|.++ .++++    
T Consensus       241 --~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~----  314 (325)
T d1pgua1         241 --LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL----  314 (325)
T ss_dssp             --EEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEE----
T ss_pred             --cccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEE----
Confidence              34566788777766666   899999999999999 9999998742 222222222222346777754 66655    


Q ss_pred             CCCeEEEEEee
Q 005459          517 SSNTYELLFYP  527 (696)
Q Consensus       517 ~~~~~~lr~y~  527 (696)
                       +.+..|++|+
T Consensus       315 -s~dg~i~vwd  324 (325)
T d1pgua1         315 -SLDGTLNFYE  324 (325)
T ss_dssp             -ETTSCEEEEE
T ss_pred             -ECCCEEEEEE
Confidence             3447899996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.1e-23  Score=223.98  Aligned_cols=144  Identities=13%  Similarity=0.219  Sum_probs=116.3

Q ss_pred             EEEEEeCCcEEEEeeccCCceeeeeeecce---------ecCCCCeEE-EEEcCCCcEEEEEecCC---eEEEEEccCCC
Q 005459          223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---------ELGSGDAVC-ASIAPEQQILAVGTRRG---VVELYDLAESA  289 (696)
Q Consensus       223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---------~~~~~~~v~-v~~sp~~~~la~g~~dg---~v~vw~~~~~~  289 (696)
                      .+.++||| ++++++.|+++++||..+++.         +.+|.++|. ++|+||+++||+|+.|+   .|++||+++ +
T Consensus       189 ~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~-g  266 (393)
T d1sq9a_         189 SVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-G  266 (393)
T ss_dssp             EEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-C
T ss_pred             EEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccccc-c
Confidence            35578888 678899999999999765433         257888888 99999999999999997   499999998 7


Q ss_pred             ceeeEEeeccC-----CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeeccccccee----cccccC
Q 005459          290 SLIRTVSLYDW-----GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSIS----SPIVKP  360 (696)
Q Consensus       290 ~~~~~~~~~~~-----~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~----~~~~sp  360 (696)
                      +.+.++.....     ....+|.+.|++|+|+|||++|+||+.|++|++||+.+++++.+|++| .+.|.    .++|+|
T Consensus       267 ~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH-~~~v~~~~~~~~~~~  345 (393)
T d1sq9a_         267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH-CDDIEIEEDILAVDE  345 (393)
T ss_dssp             CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC-GGGCSSGGGCCCBCT
T ss_pred             eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCc-CCcccCCccEEEECC
Confidence            77777653221     122369999999999999999999999999999999999999999998 55565    477888


Q ss_pred             CCCCCccceecce
Q 005459          361 NQDCKYEPLMSGT  373 (696)
Q Consensus       361 ~~~~~~~~l~sg~  373 (696)
                      ++    +.++++.
T Consensus       346 ~~----~~~~~~~  354 (393)
T d1sq9a_         346 HG----DSLAEPG  354 (393)
T ss_dssp             TS----CBCSSCC
T ss_pred             CC----CEEEEcc
Confidence            87    6666554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=7.8e-23  Score=211.63  Aligned_cols=250  Identities=11%  Similarity=0.098  Sum_probs=170.6

Q ss_pred             eEEEEEeCCcEEEEEccCe--EEEeecCCce-eeEEEeecChHHHhh-cccccEEEEcC--CCcEEEEEecCcEEEEEEE
Q 005459           23 QIIYFKVNNGLLLIASPCH--IELWSSSQHK-VRLGKYKRDSESVQR-EGENLQAVWSP--DTKLIAVVTSSLYLHIFKV   96 (696)
Q Consensus        23 ~~v~fs~dg~lla~~~~~~--v~iW~~~~~~-~~l~~~~r~~~sl~~-~G~~~~v~wsP--Dg~~lav~t~dg~l~l~~l   96 (696)
                      ..+.|+|+|..||.++.+.  |+.|+..... ..+..+.      .+ ...+.+++|+|  ||++||+++.||+|+||++
T Consensus        21 t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~------gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~   94 (325)
T d1pgua1          21 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT------GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW   94 (325)
T ss_dssp             CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC------TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEe------CCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeee
Confidence            3478999999999886555  4556643111 1222222      12 24678999998  6789999999999999999


Q ss_pred             EecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eeeCCCeEEEEec--CCcEEEEecCCccccceeeccC
Q 005459           97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLS--DGSLYSISWKGEFYGAFELVHS  172 (696)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~~~~llv~t~--~g~i~~~~w~~~~~~~~~~~~~  172 (696)
                      .........             .......  ...+.+.|.+  +.+++.++++++.  ++.+..+.|+......      
T Consensus        95 ~~~~~~~~~-------------~~~~~~~--~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------  153 (325)
T d1pgua1          95 TFDKESNSV-------------EVNVKSE--FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLG------  153 (325)
T ss_dssp             EEEGGGTEE-------------EEEEEEE--EECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEE------
T ss_pred             cCCcceeee-------------ecccccc--cccccCcEEEEEECCCCCccceeeccccceEEEEeecccccce------
Confidence            865432111             0011111  1223344544  4567788877765  4567777776322110      


Q ss_pred             CCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcE-EEEeeccCCceeeeeeecc
Q 005459          173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQL-MSCSVSKKGLKLAEFIKID  251 (696)
Q Consensus       173 p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~-~~~~~~d~~~~~~~~~~~~  251 (696)
                                                    .+..+...|.++.          +++++.. +++++.|+.+++|+....+
T Consensus       154 ------------------------------~~~~h~~~v~~~~----------~~~~~~~~~~~~~~d~~v~~~d~~~~~  193 (325)
T d1pgua1         154 ------------------------------EVSGHSQRINACH----------LKQSRPMRSMTVGDDGSVVFYQGPPFK  193 (325)
T ss_dssp             ------------------------------ECCSCSSCEEEEE----------ECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred             ------------------------------eeeeccccccccc----------ccccccceEEEeecccccccccccccc
Confidence                                          1123455577665          5566654 5567778888899865433


Q ss_pred             ee------cCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEEC---CCCC
Q 005459          252 KE------LGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT---PDNS  320 (696)
Q Consensus       252 ~~------~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~s---pdg~  320 (696)
                      ..      .+|...+. ++|+|+ +++||+|+.||.|++||+++ ++.+.++.+        |..+|..+.|+   |||+
T Consensus       194 ~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~-~~~~~~l~~--------~~~~v~~~~~s~~~~dg~  264 (325)
T d1pgua1         194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS-GEFLKYIED--------DQEPVQGGIFALSWLDSQ  264 (325)
T ss_dssp             EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT-CCEEEECCB--------TTBCCCSCEEEEEESSSS
T ss_pred             cceecccccCCCCccEEeeeccccceeccccccccceeeeeecc-ccccccccc--------cccccccceeeeeccCCC
Confidence            21      45666666 999996 78999999999999999988 788888887        77666655555   7899


Q ss_pred             eEEEEEcCCcEEEEEccCCeeEEEeecc
Q 005459          321 AFAVGWKSRGLTVWSVSGCRLMSTIRQI  348 (696)
Q Consensus       321 ~lasg~~Dg~v~vW~~~~~~~~~~l~~~  348 (696)
                      +|++|+.|++|+|||+.+++++.++..+
T Consensus       265 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~  292 (325)
T d1pgua1         265 KFATVGADATIRVWDVTTSKCVQKWTLD  292 (325)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEEEec
Confidence            9999999999999999999988887765

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.5e-23  Score=210.19  Aligned_cols=277  Identities=13%  Similarity=0.130  Sum_probs=190.8

Q ss_pred             ecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEE
Q 005459          253 ELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT  332 (696)
Q Consensus       253 ~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~  332 (696)
                      +.||.+.|..+++++|++||+|+.||+|+|||+.+ +++++++.+        |+++|.+++|+|+  .|++|+.|++++
T Consensus        12 l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~-~~~~~~~~~--------h~~~V~~v~~~~~--~l~s~s~D~~~~   80 (342)
T d2ovrb2          12 LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVT-GKCLRTLVG--------HTGGVWSSQMRDN--IIISGSTDRTLK   80 (342)
T ss_dssp             EECSTTSCEEEEEEETTEEEEEETTSCEEEEETTT-CCEEEECCC--------CSSCEEEEEEETT--EEEEEETTSCEE
T ss_pred             ECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCC-CCEEEEEeC--------CCCCEEEEEeCCC--ccccceeccccc
Confidence            47899876535778899999999999999999988 888888888        9999999999985  999999999999


Q ss_pred             EEEccCCeeEEEeecccccceecccccCCC----------------------------------CCCccceecce---ee
Q 005459          333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQ----------------------------------DCKYEPLMSGT---SM  375 (696)
Q Consensus       333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~----------------------------------~~~~~~l~sg~---~~  375 (696)
                      +|+............+ ...+......+..                                  ......++.+.   .+
T Consensus        81 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  159 (342)
T d2ovrb2          81 VWNAETGECIHTLYGH-TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV  159 (342)
T ss_dssp             EEETTTTEEEEEECCC-SSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred             ccccccccceeccccc-ceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeE
Confidence            9998776554433322 1111111000000                                  00112233333   77


Q ss_pred             EEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCc
Q 005459          376 MQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP  454 (696)
Q Consensus       376 ~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  454 (696)
                      ++|+....+.+....+|...+..+.+ ++.+++++.|+.+++|++..+..                    ...+.+|...
T Consensus       160 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~--------------------~~~~~~~~~~  219 (342)
T d2ovrb2         160 KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC--------------------IHTLTGHQSL  219 (342)
T ss_dssp             EEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE--------------------EEEECCCCSC
T ss_pred             EEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeeccccee--------------------eeEecccccc
Confidence            88888888888888888888877777 77888999999999998765543                    3456778888


Q ss_pred             eEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCc
Q 005459          455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQ  533 (696)
Q Consensus       455 I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~  533 (696)
                      +.+++++  +++||+|+.||.+ +||....+..............+..+.+.+++++++     +.+..||+|+.+.   
T Consensus       220 v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----s~Dg~i~iwd~~t---  289 (342)
T d2ovrb2         220 TSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-----SDDGTVKLWDLKT---  289 (342)
T ss_dssp             EEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEE-----ETTSEEEEEETTT---
T ss_pred             eeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEE-----cCCCEEEEEECCC---
Confidence            8877665  5699999999999 999988764332221222233466788889988887     3447899998752   


Q ss_pred             cceeEEeec------CCcc--EEEEccCCEEEEEEcCce----EEEEEEE
Q 005459          534 SSLLCRKSL------LAKP--IVMDVYEDYILVTYRPFD----VHIFHVK  571 (696)
Q Consensus       534 ~~~~~~~~~------~~~~--l~~~~~~~~llv~~~d~~----~~l~~~~  571 (696)
                      ...+.....      ..++  +.+++.+..+++++.|++    +.+|+++
T Consensus       290 g~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         290 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             CCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence            112222211      1222  455566666777777774    5555554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.9e-22  Score=214.32  Aligned_cols=277  Identities=10%  Similarity=0.069  Sum_probs=176.8

Q ss_pred             hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccc-cceeEEEeeeCC--
Q 005459           66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAE-KGLSVSNIVSDN--  142 (696)
Q Consensus        66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~~~~~--  142 (696)
                      +.+++.++++++  ++|++++.|++|+||+....+.....      .....      ........ +......+..++  
T Consensus        13 H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~   78 (393)
T d1sq9a_          13 HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPK------DKSYS------HFVHKSGLHHVDVLQAIERDAFE   78 (393)
T ss_dssp             SSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGG------GGEEE------EECCTTCEEEEEEEEEEETTTEE
T ss_pred             ccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCccc------ceeEe------eeeccCCceEeeeEeeeccCCCC
Confidence            457888998875  69999999999999997654421110      00000      00000000 001111222222  


Q ss_pred             -CeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcc
Q 005459          143 -KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR  221 (696)
Q Consensus       143 -~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  221 (696)
                       ..++.++.||.+..|+..........           ......               ......+...+..+.+.+...
T Consensus        79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~-----------~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~  132 (393)
T d1sq9a_          79 LCLVATTSFSGDLLFYRITREDETKKV-----------IFEKLD---------------LLDSDMKKHSFWALKWGASND  132 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCE-----------EEEEEC---------------CSCTTGGGSCEEEEEEECCC-
T ss_pred             CcEEEEEeCCCcEEEEEccCCCceeee-----------eccccc---------------eeeeccCCCceEEEEEecCCC
Confidence             34556778999988653322111000           000000               000011122233443322211


Q ss_pred             eEEEEEeCCcEEEEeeccCCceeeeeeecce------------------e---cCCCC-eEEEEEcCCCcEEEEEecCCe
Q 005459          222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK------------------E---LGSGD-AVCASIAPEQQILAVGTRRGV  279 (696)
Q Consensus       222 ~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~------------------~---~~~~~-~v~v~~sp~~~~la~g~~dg~  279 (696)
                           ...+..+++++.|+++++|+......                  .   ..+.. ..+++|+|++ +||+|+.||+
T Consensus       133 -----~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~  206 (393)
T d1sq9a_         133 -----RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT  206 (393)
T ss_dssp             --------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE
T ss_pred             -----cccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCc
Confidence                 23456778888899999998642110                  0   11222 3459999998 8999999999


Q ss_pred             EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc---EEEEEccCCeeEEEee----------
Q 005459          280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG---LTVWSVSGCRLMSTIR----------  346 (696)
Q Consensus       280 v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~---v~vW~~~~~~~~~~l~----------  346 (696)
                      |+|||+.+ ++.+..+....  ...+|+.+|++++|||||++|++|+.|++   |++||+..+.++.++.          
T Consensus       207 i~iwd~~~-~~~~~~~~~~~--~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~  283 (393)
T d1sq9a_         207 VQISELST-LRPLYNFESQH--SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL  283 (393)
T ss_dssp             EEEEETTT-TEEEEEEECCC-----CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------
T ss_pred             EEEEeecc-ccccccccccc--ccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecccccccccee
Confidence            99999987 66665554311  11249999999999999999999999985   9999999998888875          


Q ss_pred             ---cccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE
Q 005459          347 ---QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV  396 (696)
Q Consensus       347 ---~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v  396 (696)
                         +| .+.|++++|+|++    +.++||+   ++++|+.++++++.++.+|.+.|
T Consensus       284 ~~~gH-~~~V~~l~fspd~----~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v  334 (393)
T d1sq9a_         284 GEFAH-SSWVMSLSFNDSG----ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI  334 (393)
T ss_dssp             CCBSB-SSCEEEEEECSSS----SEEEEEETTSEEEEEETTTTEEEEEEECCGGGC
T ss_pred             eeecc-cCceeeeccCCCC----CeeEEECCCCEEEEEECCCCCEEEEECCcCCcc
Confidence               45 7789999999998    8999998   99999999999999999998877

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=4.5e-23  Score=208.53  Aligned_cols=270  Identities=10%  Similarity=0.048  Sum_probs=181.6

Q ss_pred             hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeee-CCCe
Q 005459           66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKH  144 (696)
Q Consensus        66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~-~~~~  144 (696)
                      +.+++.+++|+|    |++++.||+|++||+.....                            .+...|.++.. .+..
T Consensus        12 H~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~~----------------------------~h~~~V~~~~~~~~~~   59 (287)
T d1pgua2          12 HNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ----------------------------DHSNLIVSLDNSKAQE   59 (287)
T ss_dssp             CSSCEEEEETTT----TEEEETTSCEEETTTTEEEC----------------------------CCCSCEEEEECCSTTC
T ss_pred             CCCceEEEEECc----EEEEeCCCeEEEEECCCCCC----------------------------CCCCCEEEEEecCCCe
Confidence            447889999998    99999999999998753211                            12223444432 3456


Q ss_pred             EEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEE
Q 005459          145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF  224 (696)
Q Consensus       145 llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  224 (696)
                      ++.++.|+.+++  |+..... .                                        ...+..+.         
T Consensus        60 ~~s~s~D~~v~~--w~~~~~~-~----------------------------------------~~~~~~~~---------   87 (287)
T d1pgua2          60 YSSISWDDTLKV--NGITKHE-F----------------------------------------GSQPKVAS---------   87 (287)
T ss_dssp             CEEEETTTEEEE--TTEEEEE-C----------------------------------------SSCEEEEE---------
T ss_pred             EEEEeecccccc--ccccccc-c----------------------------------------ccceeeee---------
Confidence            788888998876  5532110 0                                        01122222         


Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeecceecC-CCCeEEEEEcCCCcEEEEEecCC-eEEEEEccCCCceeeEEeeccCCC
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKELG-SGDAVCASIAPEQQILAVGTRRG-VVELYDLAESASLIRTVSLYDWGY  302 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~v~v~~sp~~~~la~g~~dg-~v~vw~~~~~~~~~~~~~~~~~~~  302 (696)
                       +.++|..++.+ .+..+.+|+....+.... .......+++|+++.+++|+.|+ .|++|++.. .+....+..     
T Consensus        88 -~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~-~~~~~~~~~-----  159 (287)
T d1pgua2          88 -ANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSD-LEVSFDLKT-----  159 (287)
T ss_dssp             -ECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTE-EEEEEECSS-----
T ss_pred             -eccCCceEEEe-ecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccc-cceeeeeee-----
Confidence             44555555443 333455555444332210 11222356788889999998876 799999875 333333322     


Q ss_pred             CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCC
Q 005459          303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYG  382 (696)
Q Consensus       303 ~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~  382 (696)
                        .|.++|++|+|+|||.+|++|+.||.|++||+..+.........|...|.+++|+|.+    ....            
T Consensus       160 --~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~----~~~~------------  221 (287)
T d1pgua2         160 --PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE----KGAN------------  221 (287)
T ss_dssp             --CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC--------------------
T ss_pred             --ccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccc----cccc------------
Confidence              3788999999999999999999999999999998876654333336778888888875    2111            


Q ss_pred             ceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEc
Q 005459          383 YRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAAS  461 (696)
Q Consensus       383 ~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s  461 (696)
                                     .+.. ...+++++.|+++++|++..+...                   ...+.+|..+|.+++|+
T Consensus       222 ---------------~~~~~~~~l~sgs~D~~i~iw~~~~~~~~-------------------~~~~~~h~~~V~~v~~~  267 (287)
T d1pgua2         222 ---------------EEEIEEDLVATGSLDTNIFIYSVKRPMKI-------------------IKALNAHKDGVNNLLWE  267 (287)
T ss_dssp             -----------------CCSCCEEEEEETTSCEEEEESSCTTCC-------------------EEETTSSTTCEEEEEEE
T ss_pred             ---------------cccCCCCeeEeecCCCeEEEEECCCCCeE-------------------EEEeCCCCCCeEEEEEC
Confidence                           0111 456789999999999998765541                   34456899999999999


Q ss_pred             CCCCEEEEEeCCccE-EEEc
Q 005459          462 KDGMFLAVAGLHGLI-LYDI  480 (696)
Q Consensus       462 ~dG~~la~ag~dG~i-~w~~  480 (696)
                      |++ .++++|.||.+ +|++
T Consensus       268 ~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         268 TPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ETT-EEEEEETTSCEEEEEE
T ss_pred             CCC-EEEEEECCCeEEEEEE
Confidence            987 58899999999 9986

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.4e-20  Score=188.37  Aligned_cols=272  Identities=13%  Similarity=0.171  Sum_probs=202.3

Q ss_pred             ccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcc
Q 005459          130 EKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISS  209 (696)
Q Consensus       130 ~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~  209 (696)
                      .+...|+|+++++++|++|+.||.|++|+.+  .....                                  ..+..|..
T Consensus        13 ~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~--~~~~~----------------------------------~~l~~H~~   56 (293)
T d1p22a2          13 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKN--TLECK----------------------------------RILTGHTG   56 (293)
T ss_dssp             SSCCCEEEEECCSSEEEEEESSSCEEEEESS--SCCEE----------------------------------EEECCCSS
T ss_pred             CCCCCEEEEEEcCCEEEEEeCCCeEEEEECC--CCcEE----------------------------------EEEecCCC
Confidence            4456789999999999999999999986543  22111                                  01223455


Q ss_pred             cEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccC
Q 005459          210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE  287 (696)
Q Consensus       210 ~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~  287 (696)
                      .|.++            ..|++++++++.|+++++|+...+...  ..........+.+....++++..++.+++|+...
T Consensus        57 ~V~~v------------~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (293)
T d1p22a2          57 SVLCL------------QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS  124 (293)
T ss_dssp             CEEEE------------ECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSS
T ss_pred             CEeee------------ecccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccc
Confidence            56554            357899999999999999998765443  1222233355667778899999999999999887


Q ss_pred             CCce--eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCC
Q 005459          288 SASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK  365 (696)
Q Consensus       288 ~~~~--~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~  365 (696)
                      ....  ...+..        |...|.++.+.+  ..+++++.|+.+++||+.+++++..+.++ ...+..+.+++     
T Consensus       125 ~~~~~~~~~~~~--------~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~-----  188 (293)
T d1p22a2         125 PTDITLRRVLVG--------HRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGH-KRGIACLQYRD-----  188 (293)
T ss_dssp             SSCCEEEEEECC--------CSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEET-----
T ss_pred             cccccccccccc--------cccccccceecc--cccccccCCCceeeecCCCCcEEEEEccc-ccccccccCCC-----
Confidence            3322  223333        888998888765  47889999999999999999999999887 45566655543     


Q ss_pred             ccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEE
Q 005459          366 YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH  441 (696)
Q Consensus       366 ~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~  441 (696)
                       ..++++.   ++++|+..+.+.+....++...+..+.+ .+.+++++.|+.+++|++.......      .     -..
T Consensus       189 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~------~-----~~~  256 (293)
T d1p22a2         189 -RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPR------A-----PAG  256 (293)
T ss_dssp             -TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTT------S-----CTT
T ss_pred             -CeEEEecCCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCEEEEEECCCCcccc------c-----cCC
Confidence             4566665   8999999999999999898888877777 8889999999999999986654310      0     000


Q ss_pred             eecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEE
Q 005459          442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD  479 (696)
Q Consensus       442 ~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~  479 (696)
                      ......+.+|..+|.+++|  |+++||+||.||.+ +||
T Consensus       257 ~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         257 TLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             ceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            0013456789999999988  57899999999999 997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=9.5e-21  Score=193.74  Aligned_cols=292  Identities=12%  Similarity=0.058  Sum_probs=182.7

Q ss_pred             eeeCCCCCCCCCceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCC-cEEEEEec
Q 005459           10 VIPLEQGLCPSSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDT-KLIAVVTS   87 (696)
Q Consensus        10 ~~~~~~~~~~~~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg-~~lav~t~   87 (696)
                      .+.+..++. +...-|+|||||++||+++ |++|+||+.+ .......+...   ..+.+++.+++|+|++ ..|++++.
T Consensus         3 ~v~~~~~h~-d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~-~~~~~~~~~~~---~~h~~~V~~v~f~~~~~~~l~sg~~   77 (342)
T d1yfqa_           3 IVQIEQAPK-DYISDIKIIPSKSLLLITSWDGSLTVYKFD-IQAKNVDLLQS---LRYKHPLLCCNFIDNTDLQIYVGTV   77 (342)
T ss_dssp             EEECSSCCS-SCEEEEEEEGGGTEEEEEETTSEEEEEEEE-TTTTEEEEEEE---EECSSCEEEEEEEESSSEEEEEEET
T ss_pred             eEEcCCCCC-CCEEEEEEeCCCCEEEEEECCCeEEEEEcc-CCCcceEEEEe---cCCCCCEEEEEEeCCCCCEEEEccc
Confidence            444444422 3455699999999999985 7899999985 22222222211   1245788999999975 58999999


Q ss_pred             CcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccce
Q 005459           88 SLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAF  167 (696)
Q Consensus        88 dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~  167 (696)
                      ||.+++|++...........+.                    ...........+...++.++.++.+.+|  +.......
T Consensus        78 d~~v~~w~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~w--d~~~~~~~  135 (342)
T d1yfqa_          78 QGEILKVDLIGSPSFQALTNNE--------------------ANLGICRICKYGDDKLIAASWDGLIEVI--DPRNYGDG  135 (342)
T ss_dssp             TSCEEEECSSSSSSEEECBSCC--------------------CCSCEEEEEEETTTEEEEEETTSEEEEE--CHHHHTTB
T ss_pred             ccceeeeecccccccccccccc--------------------ccccccccccccccccccccccccccee--eccccccc
Confidence            9999999987554322111110                    1111223344566788889999999874  43221110


Q ss_pred             eeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeee
Q 005459          168 ELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF  247 (696)
Q Consensus       168 ~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~  247 (696)
                      ...        ....    .              .......            .....+.+++..+++++.|+.+++|+.
T Consensus       136 ~~~--------~~~~----~--------------~~~~~~~------------~~~~~~~~~~~~~~~~~~d~~i~~~~~  177 (342)
T d1yfqa_         136 VIA--------VKNL----N--------------SNNTKVK------------NKIFTMDTNSSRLIVGMNNSQVQWFRL  177 (342)
T ss_dssp             CEE--------EEES----C--------------SSSSSSC------------CCEEEEEECSSEEEEEESTTEEEEEES
T ss_pred             eee--------eccc----c--------------cccccce------------eeeeeeeccCCceeeecCCCcEEEEec
Confidence            000        0000    0              0000000            112346678888899999999999997


Q ss_pred             eeccee------cCC-CCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCce-----eeEEeec-cCCCCCCCCCCeEEE
Q 005459          248 IKIDKE------LGS-GDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASL-----IRTVSLY-DWGYSMDDTGPVSCI  313 (696)
Q Consensus       248 ~~~~~~------~~~-~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~-----~~~~~~~-~~~~~~~h~g~V~~l  313 (696)
                      ...+..      ..+ ....+ ..+++++..+++++.||.+.+|+.+.....     ...+... ......+|...|++|
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l  257 (342)
T d1yfqa_         178 PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI  257 (342)
T ss_dssp             SCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEE
T ss_pred             ccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeE
Confidence            654322      122 23344 444557889999999999999998763211     1111111 111223578899999


Q ss_pred             EECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecc
Q 005459          314 AWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG  372 (696)
Q Consensus       314 ~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg  372 (696)
                      +|+|+|.+||+|+.||.|++||+.+++.+.++..++.  +..++|+|++    +.++.+
T Consensus       258 ~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~--~~~~~~s~~~----~~l~~a  310 (342)
T d1yfqa_         258 EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE--DSVVKIACSD----NILCLA  310 (342)
T ss_dssp             EECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS--SEEEEEEECS----SEEEEE
T ss_pred             EecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCC--CEEEEEEeCC----CEEEEE
Confidence            9999999999999999999999999999988876533  3445666666    555443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.3e-20  Score=188.64  Aligned_cols=267  Identities=14%  Similarity=0.157  Sum_probs=187.6

Q ss_pred             cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEE
Q 005459          254 LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV  333 (696)
Q Consensus       254 ~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~v  333 (696)
                      .+|...|. ++++|+++||+|+.||+|+|||+++ +++++++++        |+++|++|+|  |+++|++|+.|+.|++
T Consensus        12 ~~~~~~V~-c~~~d~~~l~sgs~Dg~i~vWd~~~-~~~~~~l~~--------H~~~V~~v~~--~~~~l~s~s~D~~i~~   79 (293)
T d1p22a2          12 SETSKGVY-CLQYDDQKIVSGLRDNTIKIWDKNT-LECKRILTG--------HTGSVLCLQY--DERVIITGSSDSTVRV   79 (293)
T ss_dssp             CSSCCCEE-EEECCSSEEEEEESSSCEEEEESSS-CCEEEEECC--------CSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred             CCCCCCEE-EEEEcCCEEEEEeCCCeEEEEECCC-CcEEEEEec--------CCCCEeeeec--ccceeecccccccccc
Confidence            35666664 2467899999999999999999988 889999998        9999999987  6789999999999999


Q ss_pred             EEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCce---EEEEecCCcceEEEEec-ceeee
Q 005459          334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR---LYAIEEGSSERVLIFSF-GKCCL  406 (696)
Q Consensus       334 W~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~---l~~~~~~~~~~v~~~~~-~~~~~  406 (696)
                      |++..+........+.. ...  .+.+..    ..++++.   ...+|+..+..   .......|...+..+.+ ...+.
T Consensus        80 ~~~~~~~~~~~~~~~~~-~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  152 (293)
T d1p22a2          80 WDVNTGEMLNTLIHHCE-AVL--HLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV  152 (293)
T ss_dssp             EESSSCCEEEEECCCCS-CEE--EEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE
T ss_pred             ccccccccccccccccc-ccc--cccccc----cceeecccccceeEeeccccccccccccccccccccccceecccccc
Confidence            99998877666554411 111  122222    3344333   78889886543   34455677778877777 66778


Q ss_pred             eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCce
Q 005459          407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW  485 (696)
Q Consensus       407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w  485 (696)
                      +++.|+++++|++..++.                    ...+.++..+|..+.++  +.++++++.||.+ +||+.+++.
T Consensus       153 ~~s~d~~i~~~d~~~~~~--------------------~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~  210 (293)
T d1p22a2         153 SASGDRTIKVWNTSTCEF--------------------VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC  210 (293)
T ss_dssp             EEETTSEEEEEETTTCCE--------------------EEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE
T ss_pred             cccCCCceeeecCCCCcE--------------------EEEEcccccccccccCC--CCeEEEecCCCEEEEEeccccee
Confidence            889999999999766553                    34566777778777664  6799999999999 999998764


Q ss_pred             EecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC------CCCccceeEEe-ecCCccEEEEccCCEEEE
Q 005459          486 RVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY------HLDQSSLLCRK-SLLAKPIVMDVYEDYILV  558 (696)
Q Consensus       486 ~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~------~l~~~~~~~~~-~~~~~~l~~~~~~~~llv  558 (696)
                      .....   .....+..+.+.+..+++++     .+..|++|+..      .......+... ....++..+..++.+|++
T Consensus       211 ~~~~~---~~~~~v~~~~~~~~~l~sg~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~~l~s  282 (293)
T d1p22a2         211 LRVLE---GHEELVRCIRFDNKRIVSGA-----YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVS  282 (293)
T ss_dssp             EEEEC---CCSSCEEEEECCSSEEEEEE-----TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEE
T ss_pred             eeeec---ccceeeeeccccceEEEEEc-----CCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCCEEEE
Confidence            33211   11122456667778888773     34689999853      11111122221 112334456667788999


Q ss_pred             EEcCceEEEEE
Q 005459          559 TYRPFDVHIFH  569 (696)
Q Consensus       559 ~~~d~~~~l~~  569 (696)
                      ++.|+.++||+
T Consensus       283 ~s~Dg~i~iWD  293 (293)
T d1p22a2         283 SSHDDTILIWD  293 (293)
T ss_dssp             CCSSSEEEEEC
T ss_pred             EecCCEEEEeC
Confidence            99999999995

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=4.7e-21  Score=196.01  Aligned_cols=246  Identities=14%  Similarity=0.148  Sum_probs=165.4

Q ss_pred             cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCcee--eEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEcCC
Q 005459          254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLI--RTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSR  329 (696)
Q Consensus       254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~--~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~Dg  329 (696)
                      .+|.+.|. ++|+|++++||+|+.||+|+|||++......  ....+        |.++|.+++|+|+ +..|++|+.||
T Consensus         8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~--------h~~~V~~v~f~~~~~~~l~sg~~d~   79 (342)
T d1yfqa_           8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR--------YKHPLLCCNFIDNTDLQIYVGTVQG   79 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE--------CSSCEEEEEEEESSSEEEEEEETTS
T ss_pred             CCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecC--------CCCCEEEEEEeCCCCCEEEEccccc
Confidence            57899888 9999999999999999999999998732222  22234        9999999999986 56899999999


Q ss_pred             cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCc----eEEEEecCCc----ceEEE
Q 005459          330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSS----ERVLI  398 (696)
Q Consensus       330 ~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~----~l~~~~~~~~----~~v~~  398 (696)
                      .|++|+............++........+.++.    ..+++++   ++.+|+....    ........+.    .....
T Consensus        80 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (342)
T d1yfqa_          80 EILKVDLIGSPSFQALTNNEANLGICRICKYGD----DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT  155 (342)
T ss_dssp             CEEEECSSSSSSEEECBSCCCCSCEEEEEEETT----TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred             ceeeeeccccccccccccccccccccccccccc----ccccccccccccceeeccccccceeeecccccccccceeeeee
Confidence            999999988776666655533333333344444    5555554   8899987532    2222222221    12344


Q ss_pred             Eec-ceeeeeccCCCCceeeeeeecCCeEEE------------------------EecCCCCcceeE-------------
Q 005459          399 FSF-GKCCLNRGVSGMTYARQVIYGEDRLLV------------------------VQSEDTDELKIL-------------  440 (696)
Q Consensus       399 ~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~------------------------~~~~~~~~~~w~-------------  440 (696)
                      +.. ...+++++.|+.+++|++.........                        ..+.+.....|.             
T Consensus       156 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~  235 (342)
T d1yfqa_         156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR  235 (342)
T ss_dssp             EEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred             eeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccc
Confidence            444 677889999999999997654422110                        001110001110             


Q ss_pred             ----EeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE-ecCCccceeeeEEEeEeeeCcEEEEEEe
Q 005459          441 ----HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWLGKIIVVCNY  514 (696)
Q Consensus       441 ----~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~-~f~~~~~e~~~~v~~~~w~~~~lv~~~~  514 (696)
                          .........+|..+|.+++|+|+|++||+||.||.+ +||+++++.. .|.   ..+...+..+.+.++.+++|+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~---~~~~~~~~~~s~~~~~l~~a~s  312 (342)
T d1yfqa_         236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA---KFNEDSVVKIACSDNILCLATS  312 (342)
T ss_dssp             EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC---CCSSSEEEEEEECSSEEEEEEE
T ss_pred             ceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec---CCCCCEEEEEEeCCCEEEEEEc
Confidence                011112234677789999999999999999999999 9999998632 222   1223346688899999988744

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.85  E-value=4.2e-21  Score=199.47  Aligned_cols=307  Identities=9%  Similarity=0.018  Sum_probs=204.9

Q ss_pred             EEe-CCcEEEEeeccCCceeeeeeeccee-cCCCCeEE-EEEcCCCcEEEEEecCC--eEEEEEccCCCceeeEEeeccC
Q 005459          226 LYS-NGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVC-ASIAPEQQILAVGTRRG--VVELYDLAESASLIRTVSLYDW  300 (696)
Q Consensus       226 ~s~-dG~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~v~-v~~sp~~~~la~g~~dg--~v~vw~~~~~~~~~~~~~~~~~  300 (696)
                      |+| ||+.+++++ ++.+.+|+...++.. .+|...+. ++|+|||++|++++.+.  .|++||+++ + ..+.+..   
T Consensus        10 fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~-~-~~~~~~~---   83 (360)
T d1k32a3          10 FSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT-G-KAEKFEE---   83 (360)
T ss_dssp             EEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTT-C-CEEECCC---
T ss_pred             ccCCCCCEEEEEE-CCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCC-C-cEEEeeC---
Confidence            788 999888765 467889988665433 56887777 99999999999877664  799999976 4 3445555   


Q ss_pred             CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecc--------
Q 005459          301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--------  372 (696)
Q Consensus       301 ~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg--------  372 (696)
                           |.+.|.+++|||||++|++++.++.+++|++.++++...+..+ ...+.+++|+|++    +.++.+        
T Consensus        84 -----~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg----~~la~~~~~~~~~~  153 (360)
T d1k32a3          84 -----NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR-EAMITDFTISDNS----RFIAYGFPLKHGET  153 (360)
T ss_dssp             -----CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCCEEECTTS----CEEEEEEEECSSTT
T ss_pred             -----CCceEEeeeecccccccceeccccccccccccccceeeeeecc-cccccchhhccce----eeeeeeccccccce
Confidence                 8999999999999999999999999999999999988888877 6678999999998    655422        


Q ss_pred             --e---eeEEEcCCCceEEEEecCCcc-eEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecC
Q 005459          373 --T---SMMQWDEYGYRLYAIEEGSSE-RVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP  445 (696)
Q Consensus       373 --~---~~~~W~~~~~~l~~~~~~~~~-~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~  445 (696)
                        .   .+.+|+..+++.......+.. ....+++ ++.+++++.++.+.+|+.......   +.          ....+
T Consensus       154 ~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~---~~----------~~~~~  220 (360)
T d1k32a3         154 DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS---FE----------VVSKP  220 (360)
T ss_dssp             CSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEE---CC----------SCBEE
T ss_pred             eeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEccccccccee---ec----------cccce
Confidence              1   577899998887666543222 2366777 899999999999999885433210   00          00001


Q ss_pred             eeeecCCCceEEEEEcCCCCEEEEEeCCcc-----E-EEEccCCceEecCCccceeeeEEEeEeee---CcEEEEEEeec
Q 005459          446 VSYISQNWPVQHVAASKDGMFLAVAGLHGL-----I-LYDIRQKKWRVFGDITQEQKIQSKGLLWL---GKIIVVCNYID  516 (696)
Q Consensus       446 ~~~~~~~~~I~~va~s~dG~~la~ag~dG~-----i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~---~~~lv~~~~~~  516 (696)
                      .....|...+..++++++|+.++++..+..     + .+++..++.+.+.... ..   +..+.+.   ......   ..
T Consensus       221 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~---~~  293 (360)
T d1k32a3         221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE-SS---ILIYSVPVHGEFAAYY---QG  293 (360)
T ss_dssp             EEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS-SE---EEEEECCCCCSHHHHH---HC
T ss_pred             EEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecC-CC---ceEEEEEecCCCeeEE---Ee
Confidence            122334455556678888888776654321     1 2222332221111000 00   1111111   111000   12


Q ss_pred             CCCeEEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459          517 SSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL  572 (696)
Q Consensus       517 ~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~  572 (696)
                      ...+..|++|+.+....  ..+...+.+  +.+++++.+|++++.|+.+++|+++-
T Consensus       294 ~~~~~~i~~~d~~~~~~--~~~~~~v~~--~~~SpDG~~l~~~~~Dg~i~v~d~~~  345 (360)
T d1k32a3         294 APEKGVLLKYDVKTRKV--TEVKNNLTD--LRLSADRKTVMVRKDDGKIYTFPLEK  345 (360)
T ss_dssp             CCCCEEEEEEETTTCCE--EEEEEEEEE--EEECTTSCEEEEEETTSCEEEEESSC
T ss_pred             cCCCCEEEEEECCCCeE--EEecCCcCE--EEECCCCCEEEEEECCCeEEEEECCC
Confidence            24567899998862211  223333443  78999999999999999999998863

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=1.6e-20  Score=189.45  Aligned_cols=257  Identities=8%  Similarity=0.035  Sum_probs=175.1

Q ss_pred             ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459          253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL  331 (696)
Q Consensus       253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v  331 (696)
                      +.||.++|. ++|+|    |++|+.||+|++||+.+ +     ...        |++.|.+++|++++ .+++++.|+++
T Consensus         9 l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~-~-----~~~--------h~~~V~~~~~~~~~-~~~s~s~D~~v   69 (287)
T d1pgua2           9 ISGHNKGITALTVNP----LISGSYDGRIMEWSSSS-M-----HQD--------HSNLIVSLDNSKAQ-EYSSISWDDTL   69 (287)
T ss_dssp             ECCCSSCEEEEETTT----TEEEETTSCEEETTTTE-E-----ECC--------CCSCEEEEECCSTT-CCEEEETTTEE
T ss_pred             ECCCCCceEEEEECc----EEEEeCCCeEEEEECCC-C-----CCC--------CCCCEEEEEecCCC-eEEEEeecccc
Confidence            478999988 99998    99999999999999865 2     234        99999999999765 57899999999


Q ss_pred             EEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeec
Q 005459          332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNR  408 (696)
Q Consensus       332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~  408 (696)
                      ++|++...+.        ...+..+.+++++    ..++.+.  .+..|+...++.......+ ....++.+ ++.++.+
T Consensus        70 ~~w~~~~~~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~  136 (287)
T d1pgua2          70 KVNGITKHEF--------GSQPKVASANNDG----FTAVLTNDDDLLILQSFTGDIIKSVRLN-SPGSAVSLSQNYVAVG  136 (287)
T ss_dssp             EETTEEEEEC--------SSCEEEEEECSSS----EEEEEETTSEEEEEETTTCCEEEEEECS-SCEEEEEECSSEEEEE
T ss_pred             cccccccccc--------ccceeeeeeccCC----ceEEEeecccceeeeccceeeeeecccc-ceeeeeeccCcceeee
Confidence            9999865431        1234555666665    5544443  7778888888877776543 34556666 4455555


Q ss_pred             cC-CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE
Q 005459          409 GV-SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR  486 (696)
Q Consensus       409 ~~-d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~  486 (696)
                      +. ++.+++|++......                   ......|..+|.+++|+|||++||+|+.||.+ +||+.+++-.
T Consensus       137 ~~~~~~v~~~~~~~~~~~-------------------~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~  197 (287)
T d1pgua2         137 LEEGNTIQVFKLSDLEVS-------------------FDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK  197 (287)
T ss_dssp             ETTTSCEEEEETTEEEEE-------------------EECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             ccccceeeeeecccccee-------------------eeeeeccCCceeEEEeccCccccccccccccccceeecccccc
Confidence            54 457889986543321                   11223567889999999999999999999999 9999988654


Q ss_pred             ecCCccceeeeEEEeEeeeC------------cEEEEEEeecCCCeEEEEEeeCCCCCccceeEEe-ecCCccE--EEEc
Q 005459          487 VFGDITQEQKIQSKGLLWLG------------KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK-SLLAKPI--VMDV  551 (696)
Q Consensus       487 ~f~~~~~e~~~~v~~~~w~~------------~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~-~~~~~~l--~~~~  551 (696)
                      ...-..  +.-.|..+.|.+            .+++++     +.+..|++|+.++-.  ..+... ....++.  .+++
T Consensus       198 ~~~~~~--h~~~v~~~~~~p~~~~~~~~~~~~~~l~sg-----s~D~~i~iw~~~~~~--~~~~~~~~h~~~V~~v~~~~  268 (287)
T d1pgua2         198 TSRWAF--RTSKINAISWKPAEKGANEEEIEEDLVATG-----SLDTNIFIYSVKRPM--KIIKALNAHKDGVNNLLWET  268 (287)
T ss_dssp             ECCSCC--CSSCEEEEEECCCC------CCSCCEEEEE-----ETTSCEEEEESSCTT--CCEEETTSSTTCEEEEEEEE
T ss_pred             cccccc--cccccceeeecccccccccccCCCCeeEee-----cCCCeEEEEECCCCC--eEEEEeCCCCCCeEEEEECC
Confidence            321111  222366777753            355555     234689999875211  112221 1122333  3344


Q ss_pred             cCCEEEEEEcCceEEEEEE
Q 005459          552 YEDYILVTYRPFDVHIFHV  570 (696)
Q Consensus       552 ~~~~llv~~~d~~~~l~~~  570 (696)
                       ++.+++++.|+.+++|++
T Consensus       269 -~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         269 -PSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             -TTEEEEEETTSCEEEEEE
T ss_pred             -CCEEEEEECCCeEEEEEE
Confidence             457888899999999986

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=1.1e-18  Score=187.64  Aligned_cols=349  Identities=9%  Similarity=-0.025  Sum_probs=211.3

Q ss_pred             EEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCC
Q 005459           33 LLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPS  111 (696)
Q Consensus        33 lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~  111 (696)
                      ++++.+ +++|.|||.. .+..+..+.-       ...+..++|||||+++++++.||++++||+.+++.....      
T Consensus        34 ~~v~~~d~g~v~v~D~~-t~~v~~~~~~-------g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~------   99 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGS-TYEIKTVLDT-------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA------   99 (432)
T ss_dssp             EEEEETTTTEEEEEETT-TCCEEEEEEC-------SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE------
T ss_pred             EEEEEcCCCEEEEEECC-CCcEEEEEeC-------CCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEE------
Confidence            456665 5699999995 6666665532       123568999999999999999999999998765432110      


Q ss_pred             CceeeeeeEEEeeeccccccceeEE--EeeeCCCeEE-EEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCC
Q 005459          112 GLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHML-LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN  188 (696)
Q Consensus       112 ~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~~ll-v~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~  188 (696)
                           .+    ..   ...+...+.  .+++|+++++ .+..++.+.+|+.+  ........  +........       
T Consensus       100 -----~i----~~---~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~--t~~~~~~~--~~~~~~~~~-------  156 (432)
T d1qksa2         100 -----EI----KI---GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE--TLEPKKIQ--STRGMTYDE-------  156 (432)
T ss_dssp             -----EE----EC---CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT--TCCEEEEE--ECCEECTTT-------
T ss_pred             -----EE----ec---CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCc--cccceeee--ccCCccccc-------
Confidence                 00    00   011122222  3567898875 46668899885543  32211100  000000000       


Q ss_pred             CcccccCCCccccCCcCCCcccEEEEEEccCc-ceEEEEEeCCcEEEEee-ccCCceeeeeeeccee----cCCCCeEE-
Q 005459          189 GLASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLLFVLYSNGQLMSCSV-SKKGLKLAEFIKIDKE----LGSGDAVC-  261 (696)
Q Consensus       189 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~s~dG~~~~~~~-~d~~~~~~~~~~~~~~----~~~~~~v~-  261 (696)
                                               +++.+.. ...+.+++||+.++.+. .++++.+|+...++..    ..+..... 
T Consensus       157 -------------------------~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~  211 (432)
T d1qksa2         157 -------------------------QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHD  211 (432)
T ss_dssp             -------------------------CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEE
T ss_pred             -------------------------eeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCcccc
Confidence                                     0111111 12355778888765544 4567777776544321    23344455 


Q ss_pred             EEEcCCCcEEEEEec-CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE-cCCcEEEEEccCC
Q 005459          262 ASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGC  339 (696)
Q Consensus       262 v~~sp~~~~la~g~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~-~Dg~v~vW~~~~~  339 (696)
                      ++|+|||+++++++. ++.+.+++.+. .+.+..+...   ....|.+......+.+.|...++.. .|+++.+|+....
T Consensus       212 ~~~spdg~~~~va~~~~~~v~v~d~~~-~~~~~~~~~g---~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~  287 (432)
T d1qksa2         212 GGLDGSHRYFITAANARNKLVVIDTKE-GKLVAIEDTG---GQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE  287 (432)
T ss_dssp             EEECTTSCEEEEEEGGGTEEEEEETTT-TEEEEEEECS---SSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             ceECCCCCEEEEeccccceEEEeeccc-ceEEEEeccC---ccccccCcccceecCCCCceecccccCCceEEecccccc
Confidence            999999998877776 45888999876 5555544431   1122566667777777776666553 3788999987554


Q ss_pred             eeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcce--EEEEecceeeeeccCCCCc
Q 005459          340 RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSER--VLIFSFGKCCLNRGVSGMT  414 (696)
Q Consensus       340 ~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~--v~~~~~~~~~~s~~~d~~~  414 (696)
                      ..    ..+ ...+....++|++    ..++++.   +..+|.....      ..|...  .+++.-++.+++++.|+++
T Consensus       288 ~~----~~~-~~~v~~~~~~~~g----~~~~~~s~p~~~~lw~~~~~------~~~~~~~~sv~vpDg~~la~~s~d~~~  352 (432)
T d1qksa2         288 GH----PDN-AWKILDSFPALGG----GSLFIKTHPNSQYLYVDATL------NPEAEISGSVAVFDIKAMTGDGSDPEF  352 (432)
T ss_dssp             TC----TTT-BTSEEEEEECSCS----CCCCEECCTTCSEEEEECTT------CSSHHHHTCEEEEEGGGCCCSSSCCCE
T ss_pred             cc----ccc-ccEEEEEEEcCCC----CeEEEEecCCccceeecccC------CCCCCeeeEEEEEechhhcccccCCce
Confidence            21    222 3346666777776    4454443   5566654321      122211  1444228899999999999


Q ss_pred             eeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEe-----CCccE-EEEccCCce
Q 005459          415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG-----LHGLI-LYDIRQKKW  485 (696)
Q Consensus       415 ~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag-----~dG~i-~w~~~sg~w  485 (696)
                      ++|++..+..                       +..|...|.+++|||||+++++..     .+|.+ +||..|++-
T Consensus       353 k~w~~~~~~~-----------------------l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         353 KTLPIAEWAG-----------------------ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             EEECHHHHHT-----------------------CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             Eecccccccc-----------------------cCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence            9998754322                       234666789999999999986653     46778 999999874

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.80  E-value=1.6e-18  Score=185.78  Aligned_cols=347  Identities=11%  Similarity=0.037  Sum_probs=195.0

Q ss_pred             EEeCCc--EEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCccc
Q 005459           27 FKVNNG--LLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI  103 (696)
Q Consensus        27 fs~dg~--lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~  103 (696)
                      +++|.+  ++++.. +++|+|||.. .+..+..+.-       +.....++|||||++|++++.||++++||+.+++...
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~-t~~~~~~l~~-------g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~   97 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGD-SKKIVKVIDT-------GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK   97 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETT-TCSEEEEEEC-------CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECC-CCcEEEEEeC-------CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE
Confidence            666643  445554 6799999996 6665655532       2345689999999999999999999999998665321


Q ss_pred             ccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCCeEEEEe-cCCcEEEEecCCccccceeeccCCCCCcccc
Q 005459          104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAA  180 (696)
Q Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~~llv~t-~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~  180 (696)
                      ..           .+    ..   ...+...+.  ++++|+++++++. .++.+.+  |+.+........  +.+     
T Consensus        98 ~~-----------~i----~~---~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i--~d~~~~~~~~~~--~~~-----  150 (426)
T d1hzua2          98 VA-----------EI----KI---GIEARSVESSKFKGYEDRYTIAGAYWPPQFAI--MDGETLEPKQIV--STR-----  150 (426)
T ss_dssp             EE-----------EE----EC---CSEEEEEEECCSTTCTTTEEEEEEEESSEEEE--EETTTCCEEEEE--ECC-----
T ss_pred             EE-----------EE----eC---CCCCcceEEeeeecCCCCEEEEeecCCCeEEE--EcCCccceeEEe--ecc-----
Confidence            10           00    00   011112222  3467899887765 5667766  554443222110  000     


Q ss_pred             cccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCc-ceEEEEEeCCcEEEEeecc-CCceeeeeeecce----ec
Q 005459          181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDK----EL  254 (696)
Q Consensus       181 ~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~s~dG~~~~~~~~d-~~~~~~~~~~~~~----~~  254 (696)
                                                 ...+..+.+.+.. ...+++++|++.++....+ +.+..++......    ..
T Consensus       151 ---------------------------~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  203 (426)
T d1hzua2         151 ---------------------------GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI  203 (426)
T ss_dssp             ---------------------------EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEE
T ss_pred             ---------------------------CCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEe
Confidence                                       0000001111111 1334566777766665543 2222333222211    12


Q ss_pred             CCCCeEE-EEEcCCCcEEEEEec-CCeEEEEEccCCCceeeEEeeccCCC-------CCCCCCCeEEEEECCCCCeEEEE
Q 005459          255 GSGDAVC-ASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYDWGY-------SMDDTGPVSCIAWTPDNSAFAVG  325 (696)
Q Consensus       255 ~~~~~v~-v~~sp~~~~la~g~~-dg~v~vw~~~~~~~~~~~~~~~~~~~-------~~~h~g~V~~l~~spdg~~lasg  325 (696)
                      ++..... ++|+|+++++.++.. +..+.+++..+ .+........+.+.       ...|.+.+....+++|+...+.+
T Consensus       204 ~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~  282 (426)
T d1hzua2         204 GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD-RRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIG  282 (426)
T ss_dssp             ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT-TEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEE
T ss_pred             ccCCccEeeeECCCCcEEEeeeecccceeeeeccc-ccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEee
Confidence            4555566 999999998887764 56789999887 66665555422211       01233444444555555544444


Q ss_pred             EcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceee
Q 005459          326 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCC  405 (696)
Q Consensus       326 ~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~  405 (696)
                      ..+..+++   ...++..++.+| ...+.+++|+|++    ..++..                .          .+   .
T Consensus       283 ~~~~~~~~---~~~~~~~~l~g~-~~~v~~v~~sPdg----~~l~v~----------------~----------~~---~  325 (426)
T d1hzua2         283 TDPKNHPQ---YAWKKVAELQGQ-GGGSLFIKTHPKS----SHLYVD----------------T----------TF---N  325 (426)
T ss_dssp             CCTTTCTT---TBTSEEEEEECS-SSCCCCEECCTTC----SEEEEC----------------C----------TT---C
T ss_pred             cccccccc---ccceEeEEEecC-CCceeEEEcCCCC----ceEEEe----------------e----------cC---C
Confidence            44443322   234677888888 5669999999998    544310                0          00   0


Q ss_pred             eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEE-----eCCccE-EEE
Q 005459          406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA-----GLHGLI-LYD  479 (696)
Q Consensus       406 ~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~a-----g~dG~i-~w~  479 (696)
                      .+++.|+++++|++.+++....+..           ..-+.....|...|.+++|||||+++.++     +.+|.+ +||
T Consensus       326 ~s~~~~~tv~vwd~~t~~~~~~~~~-----------~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D  394 (426)
T d1hzua2         326 PDARISQSVAVFDLKNLDAKYQVLP-----------IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD  394 (426)
T ss_dssp             SSHHHHTCEEEEETTCTTSCCEEEC-----------HHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred             CCcccCCEEEEEECCCCCcCeEEec-----------cchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEE
Confidence            1344566777777766553100000           00011223455678999999999987543     467888 999


Q ss_pred             ccCCc
Q 005459          480 IRQKK  484 (696)
Q Consensus       480 ~~sg~  484 (696)
                      ..|+|
T Consensus       395 ~~T~k  399 (426)
T d1hzua2         395 DKTLK  399 (426)
T ss_dssp             TTTTE
T ss_pred             CCCCe
Confidence            99986

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.75  E-value=9.3e-18  Score=179.81  Aligned_cols=288  Identities=9%  Similarity=0.004  Sum_probs=173.8

Q ss_pred             EEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceee--EEeeccCCCCCC
Q 005459          232 LMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIR--TVSLYDWGYSMD  305 (696)
Q Consensus       232 ~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~--~~~~~~~~~~~~  305 (696)
                      ++++...++++++||..+++.+   ..|. .+. ++|||||++|++++.||+|++||+.+ ++...  .+..     ..+
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t-~~~~~~~~i~~-----~~~  106 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWA-KEPTKVAEIKI-----GIE  106 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTS-SSCEEEEEEEC-----CSE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccC-CceeEEEEEeC-----CCC
Confidence            3455667889999999877654   3443 466 99999999999999999999999987 44332  2221     112


Q ss_pred             CCCCeEEEEECCCCCeEEE-EEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce-ecce----eeEEEc
Q 005459          306 DTGPVSCIAWTPDNSAFAV-GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT----SMMQWD  379 (696)
Q Consensus       306 h~g~V~~l~~spdg~~las-g~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l-~sg~----~~~~W~  379 (696)
                      |.+.+.+++|||||++|++ ++.++++++||..++.+...+..+ ...+....+.+++    ... +.++    ....+.
T Consensus       107 ~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~i~~s~d~~~~~~~~  181 (426)
T d1hzua2         107 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR-GMTVDTQTYHPEP----RVAAIIASHEHPEFIVNV  181 (426)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC-EECSSSCCEESCC----CEEEEEECSSSSEEEEEE
T ss_pred             CcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeecc-CCCccceeecCCC----ceeEEEECCCCCEEEEec
Confidence            6777888999999998755 568899999999999988888776 3445555555554    211 1111    222223


Q ss_pred             CCCceEEEEe-----------cCCcceE--EEEec-ceeeeecc-CCCCceeeeeeecCCeEEEEecC------------
Q 005459          380 EYGYRLYAIE-----------EGSSERV--LIFSF-GKCCLNRG-VSGMTYARQVIYGEDRLLVVQSE------------  432 (696)
Q Consensus       380 ~~~~~l~~~~-----------~~~~~~v--~~~~~-~~~~~s~~-~d~~~~~w~~~~~~~~~~~~~~~------------  432 (696)
                      .+++++....           .++...+  ..+++ ++.+..++ .+..+.+++...+........+.            
T Consensus       182 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (426)
T d1hzua2         182 KETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH  261 (426)
T ss_dssp             TTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEE
T ss_pred             CCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeec
Confidence            3333332221           1222233  34444 55444443 33334343322211111111000            


Q ss_pred             -------------CCCccee---------EEeecCeeeecCCCceEEEEEcCCCCEEEE-------EeCCccE-EEEccC
Q 005459          433 -------------DTDELKI---------LHLNLPVSYISQNWPVQHVAASKDGMFLAV-------AGLHGLI-LYDIRQ  482 (696)
Q Consensus       433 -------------~~~~~~w---------~~~~~~~~~~~~~~~I~~va~s~dG~~la~-------ag~dG~i-~w~~~s  482 (696)
                                   +.....|         ...+++..+.+|...+++++|+|||++|++       ++.++++ +||+.+
T Consensus       262 ~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t  341 (426)
T d1hzua2         262 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN  341 (426)
T ss_dssp             TTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred             CCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCC
Confidence                         0000011         112445677889999999999999999995       5567899 999998


Q ss_pred             CceE-ecCCc-----cceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCCCC
Q 005459          483 KKWR-VFGDI-----TQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRYHL  531 (696)
Q Consensus       483 g~w~-~f~~~-----~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~~l  531 (696)
                      ++.. .+...     ..+..-.|..+.|.+  +.++++|+...+.+..|++|+..++
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~  398 (426)
T d1hzua2         342 LDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL  398 (426)
T ss_dssp             TTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTT
T ss_pred             CCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCC
Confidence            7632 11000     011222366778864  5677777766677788999987633

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=1.9e-16  Score=169.72  Aligned_cols=306  Identities=9%  Similarity=0.003  Sum_probs=188.7

Q ss_pred             EEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCce--eeEEeeccCCCCCCC
Q 005459          233 MSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASL--IRTVSLYDWGYSMDD  306 (696)
Q Consensus       233 ~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~--~~~~~~~~~~~~~~h  306 (696)
                      +++.+.++++.+||..+.+.+   ..+ ..+. ++|||||++|++++.||+|++||+.+ ++.  ...+..     ..+|
T Consensus        35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t-~~~~~~~~i~~-----~~~~  107 (432)
T d1qksa2          35 SVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM-KEPTTVAEIKI-----GSEA  107 (432)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS-SSCCEEEEEEC-----CSEE
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeC-CCceEEEEEec-----CCCC
Confidence            455567778888998776554   334 3566 99999999999999999999999987 433  333332     0126


Q ss_pred             CCCeEEEEECCCCCeE-EEEEcCCcEEEEEccCCeeEEEeecccc----------cceecccccCCCCCCcccee-cce-
Q 005459          307 TGPVSCIAWTPDNSAF-AVGWKSRGLTVWSVSGCRLMSTIRQISL----------SSISSPIVKPNQDCKYEPLM-SGT-  373 (696)
Q Consensus       307 ~g~V~~l~~spdg~~l-asg~~Dg~v~vW~~~~~~~~~~l~~~~~----------~~v~~~~~sp~~~~~~~~l~-sg~-  373 (696)
                      .+.+.+.+|||||++| ++++.++++++||..+++++.++..++.          ....++.++|++    ..++ +.. 
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg----~~~~vs~~~  183 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR----PEFIVNVKE  183 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS----SEEEEEETT
T ss_pred             CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCC----CEEEEEEcc
Confidence            6778888999999986 6788899999999999999888876521          223345666766    3332 221 


Q ss_pred             --eeEEEcCCCceEEEEec-CCcceE--EEEec-ceeeeeccC-CCCceeeeeeecCCeEEEEecCCCC-----------
Q 005459          374 --SMMQWDEYGYRLYAIEE-GSSERV--LIFSF-GKCCLNRGV-SGMTYARQVIYGEDRLLVVQSEDTD-----------  435 (696)
Q Consensus       374 --~~~~W~~~~~~l~~~~~-~~~~~v--~~~~~-~~~~~s~~~-d~~~~~w~~~~~~~~~~~~~~~~~~-----------  435 (696)
                        .+.+|+..+.+...... .+...+  ..|++ ++.++.++. +..+.+++...+.....+..+....           
T Consensus       184 ~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~  263 (432)
T d1qksa2         184 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHP  263 (432)
T ss_dssp             TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEET
T ss_pred             CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecC
Confidence              77888877655433221 222233  66777 776665554 4455555443222111111111110           


Q ss_pred             ------------cceeEEe-ecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeE-EE
Q 005459          436 ------------ELKILHL-NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ-SK  500 (696)
Q Consensus       436 ------------~~~w~~~-~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~-v~  500 (696)
                                  +..+..+ ..+.....|.|.|...+++|+|..+++++.+... +|...+..-        +.... ..
T Consensus       264 ~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~--------~~~~~~sv  335 (432)
T d1qksa2         264 TFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP--------EAEISGSV  335 (432)
T ss_dssp             TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS--------SHHHHTCE
T ss_pred             CCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCC--------CCCeeeEE
Confidence                        0000011 1222344678899999999999999999999998 998765421        11111 11


Q ss_pred             eEeeeCcEEEEEEeecCCCeEEEEEeeCC---CCCccceeEEeecCCccEEEEccCCEEEEEE-----cCceEEEEE
Q 005459          501 GLLWLGKIIVVCNYIDSSNTYELLFYPRY---HLDQSSLLCRKSLLAKPIVMDVYEDYILVTY-----RPFDVHIFH  569 (696)
Q Consensus       501 ~~~w~~~~lv~~~~~~~~~~~~lr~y~~~---~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~-----~d~~~~l~~  569 (696)
                      . .+.+..++++     +.+..+|+|+..   .|...    ...+..  +.++++|+++++..     .++.|.||+
T Consensus       336 ~-vpDg~~la~~-----s~d~~~k~w~~~~~~~l~~~----~~~v~~--~~fS~DG~~v~~S~~~~~~~~g~i~i~D  400 (432)
T d1qksa2         336 A-VFDIKAMTGD-----GSDPEFKTLPIAEWAGITEG----QPRVVQ--GEFNKDGTEVWFSVWNGKDQESALVVVD  400 (432)
T ss_dssp             E-EEEGGGCCCS-----SSCCCEEEECHHHHHTCCSS----CCEEEE--EEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             E-EEechhhccc-----ccCCceEecccccccccCCC----CCcEEE--eEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence            2 2667766665     455688999753   23221    111111  56889999987743     246688875

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.68  E-value=6.4e-15  Score=147.96  Aligned_cols=224  Identities=10%  Similarity=0.079  Sum_probs=159.5

Q ss_pred             EEEEeCCcEEE-EeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEE-EecCCeEEEEEccCCCceeeEEeec
Q 005459          224 FVLYSNGQLMS-CSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAV-GTRRGVVELYDLAESASLIRTVSLY  298 (696)
Q Consensus       224 ~~~s~dG~~~~-~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~-g~~dg~v~vw~~~~~~~~~~~~~~~  298 (696)
                      ++++|||+.++ ++..++++++||..+++..   ..+..+..++++++++.+++ +..++.+.+|+..+ .+....+.. 
T Consensus        37 va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-  114 (301)
T d1l0qa2          37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTS-NTVAGTVKT-  114 (301)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEEC-
T ss_pred             EEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccccccccccccccceeeeccccc-ceeeeeccc-
Confidence            45899999765 5557889999998776543   45666666999999986554 55678999999987 666666654 


Q ss_pred             cCCCCCCCCCCeEEEEECCCCCeEEE-EEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce----
Q 005459          299 DWGYSMDDTGPVSCIAWTPDNSAFAV-GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----  373 (696)
Q Consensus       299 ~~~~~~~h~g~V~~l~~spdg~~las-g~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----  373 (696)
                              .....+++|+|||..++. +..++.+.+|+..+......+..+  ..+..++++|++    ..+..+.    
T Consensus       115 --------~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~  180 (301)
T d1l0qa2         115 --------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG--RSPKGIAVTPDG----TKVYVANFDSM  180 (301)
T ss_dssp             --------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC--SSEEEEEECTTS----SEEEEEETTTT
T ss_pred             --------cccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC--CCceEEEeeccc----cceeeeccccc
Confidence                    456789999999998764 556788999999999988888765  346778889887    5444333    


Q ss_pred             eeEEEcCCCceEEEEecCCcceE-EEEec-ceeeeec---cCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee
Q 005459          374 SMMQWDEYGYRLYAIEEGSSERV-LIFSF-GKCCLNR---GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY  448 (696)
Q Consensus       374 ~~~~W~~~~~~l~~~~~~~~~~v-~~~~~-~~~~~s~---~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  448 (696)
                      ....|.....++......+.... ..+.+ ++.++.+   ..++++.+||+.+++.                    ...+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~--------------------~~~~  240 (301)
T d1l0qa2         181 SISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI--------------------TARI  240 (301)
T ss_dssp             EEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE--------------------EEEE
T ss_pred             ccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeE--------------------EEEE
Confidence            56677777777766665443333 55555 5544333   3345677887654432                    2222


Q ss_pred             ecCCCceEEEEEcCCCCEE-EEEeCCccE-EEEccCCc
Q 005459          449 ISQNWPVQHVAASKDGMFL-AVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       449 ~~~~~~I~~va~s~dG~~l-a~ag~dG~i-~w~~~sg~  484 (696)
                      .. ...++.++|||||++| ++++.+|.+ +||+++++
T Consensus       241 ~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         241 PV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             cC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence            22 3357899999999987 566778999 99999986

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.65  E-value=5.4e-16  Score=159.11  Aligned_cols=283  Identities=9%  Similarity=-0.021  Sum_probs=164.5

Q ss_pred             EEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEE-EecCcEEEEEEEEecCcc
Q 005459           25 IYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAV-VTSSLYLHIFKVQITEKS  102 (696)
Q Consensus        25 v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav-~t~dg~l~l~~l~~~~~~  102 (696)
                      ++||++|++|+++ .+++|.|||+. ....+..++-.     +.+....++|+|||+++++ +..++.|.+||+.+++..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~-t~~~~~t~~~~-----~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~   75 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVA-SDTVYKSCVMP-----DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT   75 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETT-TTEEEEEEECS-----SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECC-CCCEEEEEEcC-----CCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeee
Confidence            3589999999988 47899999996 55555544311     1234568999999998755 457899999998755421


Q ss_pred             cccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcE------------EEEecCCccccceeec
Q 005459          103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSL------------YSISWKGEFYGAFELV  170 (696)
Q Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i------------~~~~w~~~~~~~~~~~  170 (696)
                      ...........         ..      ....-..+++|+++++++..+...            ..++..  ...     
T Consensus        76 ~~~~~~~~~~~---------~~------~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~--~~~-----  133 (346)
T d1jmxb_          76 FHANLSSVPGE---------VG------RSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA--DGL-----  133 (346)
T ss_dssp             EEEESCCSTTE---------EE------ECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG--GGG-----
T ss_pred             eeecccccccc---------cC------CceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecc--cce-----
Confidence            11100000000         00      000113567788888877654322            221111  000     


Q ss_pred             cCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeec
Q 005459          171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI  250 (696)
Q Consensus       171 ~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~  250 (696)
                                                           ..........+....++..++|+++++..   ..+.+|+..++
T Consensus       134 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  173 (346)
T d1jmxb_         134 -------------------------------------EAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTG  173 (346)
T ss_dssp             -------------------------------------GBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTC
T ss_pred             -------------------------------------eeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCC
Confidence                                                 00000111122222223344555555432   22334443222


Q ss_pred             cee---cCC---------------------CCeEE-----EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459          251 DKE---LGS---------------------GDAVC-----ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG  301 (696)
Q Consensus       251 ~~~---~~~---------------------~~~v~-----v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~  301 (696)
                      +..   ..+                     ...+.     ..+.+....++++..++.+.+|+.............    
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  249 (346)
T d1jmxb_         174 KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD----  249 (346)
T ss_dssp             CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE----
T ss_pred             CEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeec----
Confidence            111   000                     11111     122233444556667778888888773333444555    


Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEE
Q 005459          302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQW  378 (696)
Q Consensus       302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W  378 (696)
                          |...+..+.++|++..++.+.. +.+++||..+++++..+...  ..+.+++|+||+    +.+++|.   .+.+|
T Consensus       250 ----~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~--~~~~~va~s~DG----~~l~v~~~d~~v~v~  318 (346)
T d1jmxb_         250 ----LTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKG----DKLYLGGTFNDLAVF  318 (346)
T ss_dssp             ----CSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECS--SCCCEEEECSSS----SCEEEESBSSEEEEE
T ss_pred             ----ccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCC--CCEEEEEEcCCC----CEEEEEeCCCcEEEE
Confidence                7888999999999999988776 68999999999988888643  358899999999    7777665   89999


Q ss_pred             cCCCceEEEEec
Q 005459          379 DEYGYRLYAIEE  390 (696)
Q Consensus       379 ~~~~~~l~~~~~  390 (696)
                      |.++++.+....
T Consensus       319 D~~t~~~i~~i~  330 (346)
T d1jmxb_         319 NPDTLEKVKNIK  330 (346)
T ss_dssp             ETTTTEEEEEEE
T ss_pred             ECccCCEEEEEE
Confidence            999999887764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.65  E-value=7.9e-14  Score=139.81  Aligned_cols=264  Identities=12%  Similarity=0.096  Sum_probs=174.0

Q ss_pred             EEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEE-EEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCC
Q 005459          233 MSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG  308 (696)
Q Consensus       233 ~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~l-a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g  308 (696)
                      +++...++++.+||..+++..   .....+..++|+|||++| ++++.+++|++||+.+ .+.++++..        |. 
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t-~~~~~~~~~--------~~-   74 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT-NNVIATVPA--------GS-   74 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT-TEEEEEEEC--------SS-
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC-Cceeeeeec--------cc-
Confidence            445567888999998776543   222344459999999977 5667899999999988 778887776        54 


Q ss_pred             CeEEEEECCCCCeEEE-EEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce----eeEEEcCCCc
Q 005459          309 PVSCIAWTPDNSAFAV-GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGY  383 (696)
Q Consensus       309 ~V~~l~~spdg~~las-g~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~~~  383 (696)
                      .+..++|++||..+++ +..++.+.+|+..+++....+..+  .....+.++|++    ..+....    ....|+..+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dg----~~~~~~~~~~~~~~~~~~~~~  148 (301)
T d1l0qa2          75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG--KSPLGLALSPDG----KKLYVTNNGDKTVSVINTVTK  148 (301)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTS----SEEEEEETTTTEEEEEETTTT
T ss_pred             cccccccccccccccccccccceeeecccccceeeeecccc--ccceEEEeecCC----Ceeeeeeccccceeeeecccc
Confidence            4689999999986655 556778999999999988888765  346778899998    5543222    6788999988


Q ss_pred             eEEEEecCCcce-EEEEec-ceeeeeccCCCC-ceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEE
Q 005459          384 RLYAIEEGSSER-VLIFSF-GKCCLNRGVSGM-TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA  460 (696)
Q Consensus       384 ~l~~~~~~~~~~-v~~~~~-~~~~~s~~~d~~-~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~  460 (696)
                      +.......+... ...+++ ++.++.++.+.. ..+|... ...                   +... .........++|
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------------~~~~-~~~~~~~~~~~~  207 (301)
T d1l0qa2         149 AVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTV-TNS-------------------VIDT-VKVEAAPSGIAV  207 (301)
T ss_dssp             EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTE-------------------EEEE-EECSSEEEEEEE
T ss_pred             ceeeecccCCCceEEEeeccccceeeeccccccccccccc-cee-------------------eeec-ccccCCcceeec
Confidence            887776554332 255566 555555554433 3333211 111                   0111 222334678999


Q ss_pred             cCCCCEEEEEeCC---ccE-EEEccCCceEecCCccceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCCCCCcc
Q 005459          461 SKDGMFLAVAGLH---GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRYHLDQS  534 (696)
Q Consensus       461 s~dG~~la~ag~d---G~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~~l~~~  534 (696)
                      +++|+++++++.+   +.+ +||..+++....-  ...  -.+.+++|.+  +.|++++    ..+..|++|+.+   ..
T Consensus       208 ~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~--~~~--~~~~~va~spdg~~l~va~----~~~~~i~v~D~~---t~  276 (301)
T d1l0qa2         208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI--PVG--PDPAGIAVTPDGKKVYVAL----SFCNTVSVIDTA---TN  276 (301)
T ss_dssp             CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE--ECC--SSEEEEEECTTSSEEEEEE----TTTTEEEEEETT---TT
T ss_pred             cccccccccccccceeeeeeeeecCCCeEEEEE--cCC--CCEEEEEEeCCCCEEEEEE----CCCCeEEEEECC---CC
Confidence            9999988776544   578 9999988643211  111  1256788864  5665552    344689999875   22


Q ss_pred             ceeEEeecCC
Q 005459          535 SLLCRKSLLA  544 (696)
Q Consensus       535 ~~~~~~~~~~  544 (696)
                      .++.+.++-.
T Consensus       277 ~~~~~~~vg~  286 (301)
T d1l0qa2         277 TITATMAVGK  286 (301)
T ss_dssp             EEEEEEECSS
T ss_pred             eEEEEEeCCC
Confidence            3445544433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=6.1e-15  Score=150.43  Aligned_cols=243  Identities=13%  Similarity=0.035  Sum_probs=152.4

Q ss_pred             cEEEEeeccCCceeeeeeeccee-----cCCCCeEE-EEEcCCCcEE-EEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459          231 QLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYS  303 (696)
Q Consensus       231 ~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~-v~~sp~~~~l-a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~  303 (696)
                      +++++++.|+++.+||..+.+..     ..+..... ++|+|||+++ ++++.|+.|.+||+.+ ++.+..+.....   
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t-~~~~~~~~~~~~---   77 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT-GETLGRIDLSTP---   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT-CCEEEEEECCBT---
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCC-CcEEEEEecCCC---
Confidence            35677778888999998876543     22333334 9999999987 5677899999999998 777777765110   


Q ss_pred             CCCCCCeEEEEECCCCCeEEEEEc------------CCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceec
Q 005459          304 MDDTGPVSCIAWTPDNSAFAVGWK------------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS  371 (696)
Q Consensus       304 ~~h~g~V~~l~~spdg~~lasg~~------------Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~s  371 (696)
                      ..+...+..++|+|||+.++++..            +..+.+||..+++...++..+  ..+..++|+|++    +.+..
T Consensus        78 ~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~  151 (337)
T d1pbyb_          78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDG----SKLYG  151 (337)
T ss_dssp             TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTS----SCEEE
T ss_pred             cccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc--CCceEEEEcCCC----CEEEE
Confidence            002234557999999999988864            578899999999988888764  457889999998    66655


Q ss_pred             ce-eeEEEcCCCceEEEEecCCcceE-EEEec-------------------------ceeeeeccCCCCceeeeeeecCC
Q 005459          372 GT-SMMQWDEYGYRLYAIEEGSSERV-LIFSF-------------------------GKCCLNRGVSGMTYARQVIYGED  424 (696)
Q Consensus       372 g~-~~~~W~~~~~~l~~~~~~~~~~v-~~~~~-------------------------~~~~~s~~~d~~~~~w~~~~~~~  424 (696)
                      +. ....|+..++++......+.... ..+.+                         .......+.+..+..|+...+..
T Consensus       152 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (337)
T d1pbyb_         152 LGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM  231 (337)
T ss_dssp             ESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE
T ss_pred             EcCCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE
Confidence            54 77789998888776653321100 00000                         11111122222333333332221


Q ss_pred             eEEEEecCCC-------------------CcceeEE--eecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459          425 RLLVVQSEDT-------------------DELKILH--LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ  482 (696)
Q Consensus       425 ~~~~~~~~~~-------------------~~~~w~~--~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s  482 (696)
                      ..........                   ....|..  .+.... ..+...+.+++|||||++|++++.+|.+ +||..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         232 AMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKR-VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEE-EECSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             EEEEecCCCcceEEEEecccceEEEEccccEEEEECCCCcEEEE-EcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            1111111000                   0012211  011111 2345568899999999999999999999 999998


Q ss_pred             Cc
Q 005459          483 KK  484 (696)
Q Consensus       483 g~  484 (696)
                      ++
T Consensus       311 ~~  312 (337)
T d1pbyb_         311 LE  312 (337)
T ss_dssp             CC
T ss_pred             Cc
Confidence            75

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.63  E-value=2.3e-13  Score=141.55  Aligned_cols=212  Identities=10%  Similarity=-0.001  Sum_probs=120.9

Q ss_pred             EEeCCcEEEEee--ccCCceeeeeeecceecCCCCeEEEEEcCCCcEE-EEEecCCeEEEEEccCCCceeeEEeeccCCC
Q 005459          226 LYSNGQLMSCSV--SKKGLKLAEFIKIDKELGSGDAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGY  302 (696)
Q Consensus       226 ~s~dG~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~l-a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~  302 (696)
                      +++||+.++...  .+..+.+|+....+.........+++++|+++.+ ++.+.||++.+|+... ............  
T Consensus       132 ~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~-~~~~~~~~~~~~--  208 (373)
T d2madh_         132 NTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAG-GAAGAGLVGAML--  208 (373)
T ss_pred             EEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCC-ceeeEEEeeecc--
Confidence            455555443332  1233445554443322222334568899998754 6788999999999887 555444433110  


Q ss_pred             CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEe--ecccccceecccccCCCCCCccceecceeeEEEcC
Q 005459          303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI--RQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDE  380 (696)
Q Consensus       303 ~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l--~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~  380 (696)
                      ...+......+.+++++..++. +.++++.+|+..+.......  ..+ ........+.|..          .....|..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----------~~~~~~~~  276 (373)
T d2madh_         209 TAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATNKAPIDAL-SGGRKADTWRPGG----------WQQVAYLK  276 (373)
T ss_pred             ccCccceeeeEEECCCceEEEe-cCCceEEEEEcCCCeEEEEEeeccc-cCcEEeeeeccCc----------ceeeEEec
Confidence            0112233456677887766654 56789999998876543221  111 1111111111211          12222332


Q ss_pred             CCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEE
Q 005459          381 YGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVA  459 (696)
Q Consensus       381 ~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va  459 (696)
                      .+.           .++.+.. +...++...++.+.+|+...++..                     ....+...+..++
T Consensus       277 d~~-----------~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~---------------------~~~~~~~~~~~~a  324 (373)
T d2madh_         277 SSD-----------GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS---------------------SQISLGHDVDAIS  324 (373)
T ss_pred             CCC-----------eEEEecCCCceEEeecCCCeEEEEECCCCcEE---------------------EEecCCCCeeEEE
Confidence            222           2222222 555667777788888887665531                     1233455688999


Q ss_pred             EcCCCCE--EEEEeCCccE-EEEccCCc
Q 005459          460 ASKDGMF--LAVAGLHGLI-LYDIRQKK  484 (696)
Q Consensus       460 ~s~dG~~--la~ag~dG~i-~w~~~sg~  484 (696)
                      |||||++  +++++.||.+ +||+.+++
T Consensus       325 ~spDG~~~l~vt~~~d~~v~v~D~~tg~  352 (373)
T d2madh_         325 VAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             ECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            9999994  5788999999 99999987

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.59  E-value=1.5e-14  Score=148.11  Aligned_cols=304  Identities=11%  Similarity=-0.014  Sum_probs=181.4

Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeeccee----cCCC-CeEEEEEcCCCcEE-EEEecCCeEEEEEccCCCceeeEEeec
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSG-DAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLY  298 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~~-~~v~v~~sp~~~~l-a~g~~dg~v~vw~~~~~~~~~~~~~~~  298 (696)
                      +++++|+++++++.++++.+||..+.+..    ..|. .+..++|+|||+++ ++++.++.|++||+.+ ++.+..+...
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t-~~~~~~~~~~   81 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT-CKNTFHANLS   81 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEESC
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCcc-Ceeeeeeccc
Confidence            46899999999999999999999877654    2333 34469999999987 5566899999999988 6766666541


Q ss_pred             cCCCCCCCCCCeEEEEECCCCCeEEEEE------------cCCcEEEEEccCCeeEEEeeccc-ccceecccccCCCCCC
Q 005459          299 DWGYSMDDTGPVSCIAWTPDNSAFAVGW------------KSRGLTVWSVSGCRLMSTIRQIS-LSSISSPIVKPNQDCK  365 (696)
Q Consensus       299 ~~~~~~~h~g~V~~l~~spdg~~lasg~------------~Dg~v~vW~~~~~~~~~~l~~~~-~~~v~~~~~sp~~~~~  365 (696)
                      ...  ..+...+..++|||||+.++++.            .++.+.+|+..+++....+..+. ...+..+.+++++   
T Consensus        82 ~~~--~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  156 (346)
T d1jmxb_          82 SVP--GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG---  156 (346)
T ss_dssp             CST--TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS---
T ss_pred             ccc--cccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCC---
Confidence            110  01223466799999999998875            36778999988776554443321 2234455556665   


Q ss_pred             ccceecceeeEEEcCCCceEEEEecCCcceE-EEEec-ceee-eeccCCCCceeeeeeecCC--eEEEEecCC-CCccee
Q 005459          366 YEPLMSGTSMMQWDEYGYRLYAIEEGSSERV-LIFSF-GKCC-LNRGVSGMTYARQVIYGED--RLLVVQSED-TDELKI  439 (696)
Q Consensus       366 ~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v-~~~~~-~~~~-~s~~~d~~~~~w~~~~~~~--~~~~~~~~~-~~~~~w  439 (696)
                       ..++++.....|+..+++.......+.... ..+++ ++.+ +....++.+..++......  ...+..... .....|
T Consensus       157 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         157 -SLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             -CEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             -EEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence             666666688899998888877765432211 22333 2222 2222223332222211100  000000000 000011


Q ss_pred             EEe--e-cCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEe
Q 005459          440 LHL--N-LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNY  514 (696)
Q Consensus       440 ~~~--~-~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~  514 (696)
                      ...  . .......|...+..+++++++.+++.+..+...+||..+++......  .  .-.+.++++.  +..+++++ 
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~--~--~~~~~~va~s~DG~~l~v~~-  310 (346)
T d1jmxb_         236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN--L--DHTYYCVAFDKKGDKLYLGG-  310 (346)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE--C--SSCCCEEEECSSSSCEEEES-
T ss_pred             ECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc--C--CCCEEEEEEcCCCCEEEEEe-
Confidence            000  0 01223456778899999999999988876543399999987543211  1  1125578886  45677662 


Q ss_pred             ecCCCeEEEEEeeCCCCCccceeEEeecCCccE
Q 005459          515 IDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPI  547 (696)
Q Consensus       515 ~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l  547 (696)
                          .+..|++|+.+.   ...+.+.+++..++
T Consensus       311 ----~d~~v~v~D~~t---~~~i~~i~~p~g~~  336 (346)
T d1jmxb_         311 ----TFNDLAVFNPDT---LEKVKNIKLPGGDM  336 (346)
T ss_dssp             ----BSSEEEEEETTT---TEEEEEEECSSSCC
T ss_pred             ----CCCcEEEEECcc---CCEEEEEECCCCCc
Confidence                235799998862   23455666666443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2.1e-12  Score=131.31  Aligned_cols=296  Identities=9%  Similarity=0.057  Sum_probs=166.0

Q ss_pred             EEEEeeccCCceeeeeeecce---e--cCCCCeEE-EEEcCCCcEEEEEe-cCCeEEEEEccCCCceeeEEeeccCCCCC
Q 005459          232 LMSCSVSKKGLKLAEFIKIDK---E--LGSGDAVC-ASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSM  304 (696)
Q Consensus       232 ~~~~~~~d~~~~~~~~~~~~~---~--~~~~~~v~-v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~  304 (696)
                      ++++++.++++++|+......   .  ..|.+.+. ++|||||++|++++ .|+.|++|+++. .....++....     
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~-~~~~~~~~~~~-----   79 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP-DDGALTFAAES-----   79 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT-TTCCEEEEEEE-----
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeC-CCCcEEEeeec-----
Confidence            456667888899998754321   1  34556665 99999999885554 589999999986 33222222210     


Q ss_pred             CCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEccCCeeEEEeec-ccccceecccccCCCCCCccceecce----eeEEE
Q 005459          305 DDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSGCRLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSGT----SMMQW  378 (696)
Q Consensus       305 ~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~~~~~~~~~l~~-~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W  378 (696)
                      .+...+..++|+|||++|+++.. ++.+++|+............ .+...+.++.++|++    +.+..+.    .+..|
T Consensus        80 ~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~----~~~~~~~~~~~~i~~~  155 (333)
T d1ri6a_          80 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN----RTLWVPALKQDRICLF  155 (333)
T ss_dssp             ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS----SEEEEEEGGGTEEEEE
T ss_pred             ccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecc----eeeeccccccceeeEE
Confidence            03455778999999999999875 67899999887765444332 224456777888876    4333221    22222


Q ss_pred             cCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEE
Q 005459          379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV  458 (696)
Q Consensus       379 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v  458 (696)
                      +..                                       .........              .+..........+.+
T Consensus       156 ~~~---------------------------------------~~~~~~~~~--------------~~~~~~~~g~~p~~i  182 (333)
T d1ri6a_         156 TVS---------------------------------------DDGHLVAQD--------------PAEVTTVEGAGPRHM  182 (333)
T ss_dssp             EEC---------------------------------------TTSCEEEEE--------------EEEEECSTTCCEEEE
T ss_pred             Eec---------------------------------------cCCcceeee--------------ceeeeeecCCCccEE
Confidence            211                                       111100000              000111223346889


Q ss_pred             EEcCCCCEEEEEeCC-ccE-EEEccCCceEecCC-------ccceeeeEEEeEee--eCcEEEEEEeecCCCeEEEEEee
Q 005459          459 AASKDGMFLAVAGLH-GLI-LYDIRQKKWRVFGD-------ITQEQKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYP  527 (696)
Q Consensus       459 a~s~dG~~la~ag~d-G~i-~w~~~sg~w~~f~~-------~~~e~~~~v~~~~w--~~~~lv~~~~~~~~~~~~lr~y~  527 (696)
                      +|++++.++...... +.. +|+.....+.....       ...........+.+  .++.+.+++    .....+++|.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~----~~~~~~~~~~  258 (333)
T d1ri6a_         183 VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD----RTASLITVFS  258 (333)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE----TTTTEEEEEE
T ss_pred             EEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeec----ccCCeEEEEE
Confidence            999999998777654 445 77765543221100       00011111223333  355666552    2335788887


Q ss_pred             CCCCC-ccceeEEeecCC--ccEEEEccCCEEEEEEc-CceEEEEEEEEecccCCCCCCeeEeEEEEEEeecccCCCCce
Q 005459          528 RYHLD-QSSLLCRKSLLA--KPIVMDVYEDYILVTYR-PFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAA  603 (696)
Q Consensus       528 ~~~l~-~~~~~~~~~~~~--~~l~~~~~~~~llv~~~-d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  603 (696)
                      .+.-. ............  .-+.++++|++|+|+.. ++.+++|++..+         +..+.+++.+.   +...|.+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~---------tG~l~~~~~~~---~g~~p~~  326 (333)
T d1ri6a_         259 VSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE---------QGLLHEKGRYA---VGQGPMW  326 (333)
T ss_dssp             ECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETT---------TTEEEEEEEEE---CSSSCCE
T ss_pred             EcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECC---------CCcEEEEEecc---CCCCCcE
Confidence            65111 111222222212  13789999999988653 578999988632         12344455443   3556777


Q ss_pred             EEE
Q 005459          604 MRF  606 (696)
Q Consensus       604 ~~~  606 (696)
                      |..
T Consensus       327 v~~  329 (333)
T d1ri6a_         327 VVV  329 (333)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.56  E-value=4.8e-14  Score=143.62  Aligned_cols=283  Identities=12%  Similarity=-0.016  Sum_probs=164.5

Q ss_pred             cEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEE-EEecCcEEEEEEEEecCcccccCCCC
Q 005459           32 GLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIA-VVTSSLYLHIFKVQITEKSIQIGGKQ  109 (696)
Q Consensus        32 ~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~la-v~t~dg~l~l~~l~~~~~~~~~~~~~  109 (696)
                      ++|++++ +++|.|||.. ....+..+....    +-+....++|||||++++ +++.++.|.+||+.+++.......+.
T Consensus         2 ~~~vt~~~d~~v~v~D~~-s~~~~~~i~~~~----~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~   76 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTE-KMAVDKVITIAD----AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETT-TTEEEEEEECTT----CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred             eEEEEEcCCCEEEEEECC-CCeEEEEEECCC----CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCC
Confidence            4677774 7899999995 655555554321    113356899999999875 55678999999987654321111110


Q ss_pred             CCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCC
Q 005459          110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG  189 (696)
Q Consensus       110 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~  189 (696)
                      ..         . ..      ....-..++++++.++++..+.....  |........           +.         
T Consensus        77 ~~---------~-~~------~~~~~v~~s~dg~~l~~~~~~~~~~~--~~~~~~~~~-----------~~---------  118 (337)
T d1pbyb_          77 PE---------E-RV------KSLFGAALSPDGKTLAIYESPVRLEL--THFEVQPTR-----------VA---------  118 (337)
T ss_dssp             TT---------E-EE------ECTTCEEECTTSSEEEEEEEEEEECS--SCEEECCCE-----------EE---------
T ss_pred             Cc---------c-cc------cceeeEEEcCCCcEEEEeecCCccee--eeccccccc-----------ee---------
Confidence            00         0 00      00011256778888887765443321  111100000           00         


Q ss_pred             cccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cC-----------
Q 005459          190 LASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LG-----------  255 (696)
Q Consensus       190 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~-----------  255 (696)
                                  .........+..+.. ......+++++||+.+++++.+  ..+|+....+..   ..           
T Consensus       119 ------------~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~  183 (337)
T d1pbyb_         119 ------------LYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQP  183 (337)
T ss_dssp             ------------EEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCC
T ss_pred             ------------eccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecC
Confidence                        000000111111111 1112235678899888876543  455654433211   00           


Q ss_pred             ----------CCCe--EE-EEEcCCCcEEEEEecCCeEEEEEccCCCcee-eEEeeccCCCCCCCCCCeEEEEECCCCCe
Q 005459          256 ----------SGDA--VC-ASIAPEQQILAVGTRRGVVELYDLAESASLI-RTVSLYDWGYSMDDTGPVSCIAWTPDNSA  321 (696)
Q Consensus       256 ----------~~~~--v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~-~~~~~~~~~~~~~h~g~V~~l~~spdg~~  321 (696)
                                +...  .. .....+...+..+..++.+.+|+..+ +... ..+..        |...+..++++|++.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~~~~~  254 (337)
T d1pbyb_         184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLET-GEMAMREVRI--------MDVFYFSTAVNPAKTR  254 (337)
T ss_dssp             BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTT-CCEEEEEEEE--------CSSCEEEEEECTTSSE
T ss_pred             CcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCC-CcEEEEEecC--------CCcceEEEEecccceE
Confidence                      0000  11 22333333344445567789999887 4433 33444        7788999999999999


Q ss_pred             EEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEe
Q 005459          322 FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE  389 (696)
Q Consensus       322 lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~  389 (696)
                      ++++  ++.+++||+.+++++.++...  ..+.+++|+|++    +.++.+.   ++.+||.++.+.+...
T Consensus       255 ~~~~--~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dG----~~l~v~~~~~~i~v~D~~t~~~v~~i  317 (337)
T d1pbyb_         255 AFGA--YNVLESFDLEKNASIKRVPLP--HSYYSVNVSTDG----STVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             EEEE--ESEEEEEETTTTEEEEEEECS--SCCCEEEECTTS----CEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             EEEc--cccEEEEECCCCcEEEEEcCC--CCEEEEEECCCC----CEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            8876  489999999999999888643  458899999999    7766554   7899999988877655

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=3.7e-13  Score=138.63  Aligned_cols=297  Identities=11%  Similarity=0.016  Sum_probs=176.4

Q ss_pred             EEEEeCCcEEEEEc------cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEe----------cC
Q 005459           25 IYFKVNNGLLLIAS------PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT----------SS   88 (696)
Q Consensus        25 v~fs~dg~lla~~~------~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t----------~d   88 (696)
                      .+.+|||+.+++..      .++|.+||.. .+..+....        -|....++|||||+.|++++          .+
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~-tg~~~~~~~--------~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d   77 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGE-AGRVIGMID--------GGFLPNPVVADDGSFIAHASTVFSRIARGERT   77 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETT-TTEEEEEEE--------ECSSCEEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECC-CCcEEEEEE--------CCCCCceEEcCCCCEEEEEeCCCccccccCCC
Confidence            45689998765542      3479999996 655555543        13445799999999998864          36


Q ss_pred             cEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecC--CcEEEEecCCccccc
Q 005459           89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSD--GSLYSISWKGEFYGA  166 (696)
Q Consensus        89 g~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~--g~i~~~~w~~~~~~~  166 (696)
                      |.|++||+.+.........+...             ...... ......+++++++++++...  ..+..  |+......
T Consensus        78 ~~v~v~D~~t~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~s~dg~~~~v~~~~~~~~~~~--~~~~~~~~  141 (355)
T d2bbkh_          78 DYVEVFDPVTLLPTADIELPDAP-------------RFLVGT-YPWMTSLTPDGKTLLFYQFSPAPAVGV--VDLEGKAF  141 (355)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCC-------------CCCBSC-CGGGEEECTTSSEEEEEECSSSCEEEE--EETTTTEE
T ss_pred             CEEEEEECCCCCEEEEEecCCcc-------------eeecCC-CCceEEEecCCCeeEEecCCCCceeee--eecCCCcE
Confidence            88999998755422111100000             000011 11123677888888887543  34444  33322221


Q ss_pred             eeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeec-cCCceee
Q 005459          167 FELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLA  245 (696)
Q Consensus       167 ~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~-d~~~~~~  245 (696)
                      ..            .++                     ....  .  ..+......++.+++||+.++.... +..+...
T Consensus       142 ~~------------~~~---------------------~~~~--~--~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~  184 (355)
T d2bbkh_         142 KR------------MLD---------------------VPDC--Y--HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT  184 (355)
T ss_dssp             EE------------EEE---------------------CCSE--E--EEEEEETTEEEEEETTSCEEEEECCSSSCCEEE
T ss_pred             ee------------EEe---------------------cCCc--c--eEeecCCcceEEEcCCCCEEEEEecCCCeEEEE
Confidence            10            000                     0000  0  1122223445678899998876554 3344444


Q ss_pred             eeeecceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCc-eeeEEeeccC--CCCCCCCCCeEEEEECCCCCe
Q 005459          246 EFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESAS-LIRTVSLYDW--GYSMDDTGPVSCIAWTPDNSA  321 (696)
Q Consensus       246 ~~~~~~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~-~~~~~~~~~~--~~~~~h~g~V~~l~~spdg~~  321 (696)
                      +.....  ..+...+. .++++++..++.++.++.+++|++..... .+........  .....+......++++|||..
T Consensus       185 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~  262 (355)
T d2bbkh_         185 HTEVFH--PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR  262 (355)
T ss_dssp             ECCCCS--CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred             eccccc--ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCe
Confidence            433221  22333333 67888888999999999999999986221 1111111000  000001223456899999999


Q ss_pred             EEEEEcCC----------cEEEEEccCCeeEEEeecccccceecccccCCCCCCcc--ceecce---eeEEEcCCCceEE
Q 005459          322 FAVGWKSR----------GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE--PLMSGT---SMMQWDEYGYRLY  386 (696)
Q Consensus       322 lasg~~Dg----------~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~--~l~sg~---~~~~W~~~~~~l~  386 (696)
                      ++....++          .|.+||..+++.+.++..+  ..+.+++|+||+    +  .++++.   ++.+||.++++++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~--~~~~~~a~spDG----~~~l~v~~~~d~~i~v~D~~tg~~~  336 (355)
T d2bbkh_         263 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDE----KPLLYALSTGDKTLYIHDAESGEEL  336 (355)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSS----SCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC--CCEEEEEEcCCC----CeEEEEEECCCCEEEEEECCCCCEE
Confidence            88876554          6999999999988888754  347899999998    5  344443   8999999999988


Q ss_pred             EEecC
Q 005459          387 AIEEG  391 (696)
Q Consensus       387 ~~~~~  391 (696)
                      ....+
T Consensus       337 ~~i~~  341 (355)
T d2bbkh_         337 RSVNQ  341 (355)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            87754

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=4.7e-13  Score=137.88  Aligned_cols=118  Identities=12%  Similarity=0.129  Sum_probs=80.4

Q ss_pred             eEEEEEeCCcEEEEeeccCCceeeeeeeccee----cC--CCCeEEEEEcCCCcEEEEEecCC----------eEEEEEc
Q 005459          222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LG--SGDAVCASIAPEQQILAVGTRRG----------VVELYDL  285 (696)
Q Consensus       222 ~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~--~~~~v~v~~sp~~~~la~g~~dg----------~v~vw~~  285 (696)
                      .+++.+.+|++++.....+.+..++.......    ..  ......++++|++..++....++          .|.+||.
T Consensus       208 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~  287 (355)
T d2bbkh_         208 RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA  287 (355)
T ss_dssp             EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred             eEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeC
Confidence            33444556666665555555554443322110    00  11122388999999988876553          6999999


Q ss_pred             cCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC--eEEEEEcCCcEEEEEccCCeeEEEeeccc
Q 005459          286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGCRLMSTIRQIS  349 (696)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~--~lasg~~Dg~v~vW~~~~~~~~~~l~~~~  349 (696)
                      .+ ++.+.++..         .+.+.+++|||||+  ++++++.|++|++||+.+++.+.++.+++
T Consensus       288 ~t-~~~~~~~~~---------~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G  343 (355)
T d2bbkh_         288 KT-GERLAKFEM---------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG  343 (355)
T ss_dssp             TT-CCEEEEEEE---------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred             CC-CcEEEEecC---------CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcC
Confidence            88 677776664         34588999999998  45677789999999999999999998653

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=2.5e-11  Score=123.18  Aligned_cols=278  Identities=13%  Similarity=0.097  Sum_probs=157.2

Q ss_pred             ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEe-cCcEEEEEEEEecCcccccCCCCCCCceee
Q 005459           38 SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQITEKSIQIGGKQPSGLFFI  116 (696)
Q Consensus        38 ~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t-~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~  116 (696)
                      .+++|+||+++..+ .+....+    ++..+.+..++|||||++|+++. .++.|++|++.........           
T Consensus        12 ~~~~I~v~~~~~~~-~l~~~~~----~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~-----------   75 (333)
T d1ri6a_          12 ESQQIHVWNLNHEG-ALTLTQV----VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-----------   75 (333)
T ss_dssp             GGTEEEEEEECTTS-CEEEEEE----EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-----------
T ss_pred             CCCcEEEEEEcCCC-CeEEEEE----EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE-----------
Confidence            67899999986332 2222221    23447778999999999996655 4899999999754321110           


Q ss_pred             eeeEEEeeeccccccceeEEEeeeCCCeEEEEec-CCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccC
Q 005459          117 KISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT  195 (696)
Q Consensus       117 ~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~-~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~  195 (696)
                          .....  .. ....-.++++|+++++++.. ++.+..+.++........                           
T Consensus        76 ----~~~~~--~~-~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~---------------------------  121 (333)
T d1ri6a_          76 ----AAESA--LP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV---------------------------  121 (333)
T ss_dssp             ----EEEEE--CS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE---------------------------
T ss_pred             ----eeecc--cC-CCceEEEEcCCCCEEeecccCCCceeeeccccccceecc---------------------------
Confidence                00000  11 11122467889999999876 456666555433221110                           


Q ss_pred             CCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeec-cCCceeeeeeeccee---------cCC-CCeEEEEE
Q 005459          196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKE---------LGS-GDAVCASI  264 (696)
Q Consensus       196 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~-d~~~~~~~~~~~~~~---------~~~-~~~v~v~~  264 (696)
                                       .....+.....+.+++||+.+++... +..+.+|+.......         ... ..+..++|
T Consensus       122 -----------------~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~  184 (333)
T d1ri6a_         122 -----------------DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF  184 (333)
T ss_dssp             -----------------EEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEE
T ss_pred             -----------------cccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEE
Confidence                             00011111122346788887666553 344555554322110         122 23345999


Q ss_pred             cCCCcEEEEEe-cCCeEEEEEccCCCceeeEE-eeccCCCCCCCCCCeEEEEECCCCCeEEEE-EcCCcEEEEEccCCee
Q 005459          265 APEQQILAVGT-RRGVVELYDLAESASLIRTV-SLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSVSGCRL  341 (696)
Q Consensus       265 sp~~~~la~g~-~dg~v~vw~~~~~~~~~~~~-~~~~~~~~~~h~g~V~~l~~spdg~~lasg-~~Dg~v~vW~~~~~~~  341 (696)
                      ++++..+.... ..+...+|+........... .....+...........++++|||++++.. ..++++.+|++.....
T Consensus       185 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~  264 (333)
T d1ri6a_         185 HPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS  264 (333)
T ss_dssp             CTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred             eccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCC
Confidence            99998877654 56788899876532222211 111122222345567889999999976655 5568999999865433


Q ss_pred             EEEeecc--cccceecccccCCCCCCcccee-cce---eeEEE--cCCCceEE
Q 005459          342 MSTIRQI--SLSSISSPIVKPNQDCKYEPLM-SGT---SMMQW--DEYGYRLY  386 (696)
Q Consensus       342 ~~~l~~~--~~~~v~~~~~sp~~~~~~~~l~-sg~---~~~~W--~~~~~~l~  386 (696)
                      ...+.++  .......++|+|++    +.++ ++.   ++.+|  |.+++.|-
T Consensus       265 ~~~~~~~~~~~~~p~~~a~spDG----k~l~va~~~~~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         265 VLSKEGFQPTETQPRGFNVDHSG----KYLIAAGQKSHHISVYEIVGEQGLLH  313 (333)
T ss_dssp             CEEEEEEEECSSSCCCEEECTTS----SEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred             EEEEEEEeCCCCCeeEEEEeCCC----CEEEEEECCCCeEEEEEEECCCCcEE
Confidence            3332221  12346778999998    6544 332   56666  55666553

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.45  E-value=1.4e-11  Score=127.67  Aligned_cols=263  Identities=9%  Similarity=-0.023  Sum_probs=141.6

Q ss_pred             CceEEEEEeCCcEEEEEc-----------cCeEEEeecCCceeeEEEeecChHH-HhhcccccEEEEcCCCcEEEEEe--
Q 005459           21 SQQIIYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRDSES-VQREGENLQAVWSPDTKLIAVVT--   86 (696)
Q Consensus        21 ~~~~v~fs~dg~lla~~~-----------~~~v~iW~~~~~~~~l~~~~r~~~s-l~~~G~~~~v~wsPDg~~lav~t--   86 (696)
                      ..+.+.|||||++|+++.           ++.|.|||.. ....+......... ..-......+.|+||++.+++..  
T Consensus        67 ~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~  145 (373)
T d2madh_          67 FLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV-TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA  145 (373)
T ss_pred             CCccEEEcCCCCEEEEEeecCCcccccccceEEEEEECC-CCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEc
Confidence            344588999999988773           3579999996 55444433221111 00112234688999999877754  


Q ss_pred             cCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeE-EEEecCCcEEEEecCCcccc
Q 005459           87 SSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM-LLGLSDGSLYSISWKGEFYG  165 (696)
Q Consensus        87 ~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~l-lv~t~~g~i~~~~w~~~~~~  165 (696)
                      .++.+.+|+........                   ...      ......+.++++.+ ++...+|.+.+++.+.....
T Consensus       146 ~~~~~~~~~~~~~~~~~-------------------~~~------~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~  200 (373)
T d2madh_         146 AGPAVGLVVQGGSSDDQ-------------------LLS------SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG  200 (373)
T ss_pred             CCCceEEeeccCCeEEE-------------------Eec------cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee
Confidence            34567777765332100                   000      00112455666655 56677888887654433221


Q ss_pred             ceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceee
Q 005459          166 AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLA  245 (696)
Q Consensus       166 ~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~  245 (696)
                      ....           ...+.                   ...........+++ ....++...+++.++.......+...
T Consensus       201 ~~~~-----------~~~~~-------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~  249 (373)
T d2madh_         201 AGLV-----------GAMLT-------------------AAQNLLTQPAQANK-SGRIVWPVYSGKILQADISAAGATNK  249 (373)
T ss_pred             EEEe-----------eeccc-------------------cCccceeeeEEECC-CceEEEecCCceEEEEEcCCCeEEEE
Confidence            1100           00000                   00000111111111 11223334444444433333322211


Q ss_pred             eeeecc---ee--cCC-CCeEEEEEcCCC----------cEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCC
Q 005459          246 EFIKID---KE--LGS-GDAVCASIAPEQ----------QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP  309 (696)
Q Consensus       246 ~~~~~~---~~--~~~-~~~v~v~~sp~~----------~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~  309 (696)
                      +.....   ..  ... .....++++|++          ..++....++.+.+||..+ ++.+..+.         +...
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t-~~~~~~~~---------~~~~  319 (373)
T d2madh_         250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQIS---------LGHD  319 (373)
T ss_pred             EeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC-CcEEEEec---------CCCC
Confidence            111100   00  000 011114444444          4455667788999999987 66666554         4567


Q ss_pred             eEEEEECCCCCe--EEEEEcCCcEEEEEccCCeeEEEeecccc
Q 005459          310 VSCIAWTPDNSA--FAVGWKSRGLTVWSVSGCRLMSTIRQISL  350 (696)
Q Consensus       310 V~~l~~spdg~~--lasg~~Dg~v~vW~~~~~~~~~~l~~~~~  350 (696)
                      +..++|||||+.  +++++.|++|++||+.+++.+.++.+++.
T Consensus       320 ~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~  362 (373)
T d2madh_         320 VDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGS  362 (373)
T ss_pred             eeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCC
Confidence            899999999984  47889999999999999999999987643

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.34  E-value=1e-11  Score=129.13  Aligned_cols=257  Identities=9%  Similarity=-0.022  Sum_probs=141.9

Q ss_pred             eEEEEEeCCcEEEEEc-----------cCeEEEeecCCceeeEEEeecChHHHhhcc-cccEEEEcCCCcEEEEEe-cCc
Q 005459           23 QIIYFKVNNGLLLIAS-----------PCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVT-SSL   89 (696)
Q Consensus        23 ~~v~fs~dg~lla~~~-----------~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G-~~~~v~wsPDg~~lav~t-~dg   89 (696)
                      +.++|||||+.+++++           +++|.+||.. ...++.............| .-..++|||||++|+++. .++
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~-t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~  146 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV-TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT-TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECC-CCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCC
Confidence            4578999999888764           4579999995 6555555432211100111 124699999999999876 579


Q ss_pred             EEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeee-CCCeEEEEecCCcEEEEecCCcccccee
Q 005459           90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHMLLGLSDGSLYSISWKGEFYGAFE  168 (696)
Q Consensus        90 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~-~~~~llv~t~~g~i~~~~w~~~~~~~~~  168 (696)
                      .+.+||++..+.......+.                     . .   .+.+ .....+..+.||.+..+...........
T Consensus       147 ~v~~~d~~~~~~~~~~~~~~---------------------~-~---~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~  201 (368)
T d1mdah_         147 AAAGLSVPGASDDQLTKSAS---------------------C-F---HIHPGAAATHYLGSCPASLAASDLAAAPAAAGI  201 (368)
T ss_dssp             CEEEEEETTTEEEEEEECSS---------------------C-C---CCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred             eEEEEECCCCcEeEEeeccC---------------------c-c---eEccCCCceEEEEcCCCCEEEEEecCCceeeee
Confidence            99999997543211110000                     0 0   0011 1233444455666555444322211110


Q ss_pred             eccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeee
Q 005459          169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI  248 (696)
Q Consensus       169 ~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~  248 (696)
                      ....                              ....+...+....+.+  .+...+...|+.++......++.+++..
T Consensus       202 ~~~~------------------------------~~~~~~~~~~~~~~~~--~g~~~~~~~~~v~~~~~~~~~~~~~~~~  249 (368)
T d1mdah_         202 VGAQ------------------------------CTGAQNCSSQAAQANY--PGMLVWAVASSILQGDIPAAGATMKAAI  249 (368)
T ss_dssp             CCCC------------------------------SCTTSCBCSCCEEETT--TTEEEECBSSCCEEEECCSSCCEEECCC
T ss_pred             eecc------------------------------cccccccceeeccccc--CcEEEEecCCCEEEEeecCCceEEEeec
Confidence            0000                              0000001111111111  1223344455555555445555544432


Q ss_pred             eccee----cC--CCCeEEEEEcCCCcEEEEEecC---------CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEE
Q 005459          249 KIDKE----LG--SGDAVCASIAPEQQILAVGTRR---------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI  313 (696)
Q Consensus       249 ~~~~~----~~--~~~~v~v~~sp~~~~la~g~~d---------g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l  313 (696)
                      .....    .+  ..+...++++|++..+.+...+         ..|.+||..+ ++.+.++..         .+.+..+
T Consensus       250 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t-~~~~~~~~~---------~~~~~~~  319 (368)
T d1mdah_         250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISN---------GHDSDAI  319 (368)
T ss_dssp             CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEE---------EEEECEE
T ss_pred             ccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC-CcEeEEecC---------CCceeEE
Confidence            22110    00  0112237889998887766433         3588999987 666665554         3568899


Q ss_pred             EECCCCCe--EEEEEcCCcEEEEEccCCeeEEEeec
Q 005459          314 AWTPDNSA--FAVGWKSRGLTVWSVSGCRLMSTIRQ  347 (696)
Q Consensus       314 ~~spdg~~--lasg~~Dg~v~vW~~~~~~~~~~l~~  347 (696)
                      +|||||+.  +++++.|++|++||+.+++.+.+++-
T Consensus       320 a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         320 IAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             EECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            99999973  46777889999999999999988874

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.11  E-value=3.6e-09  Score=113.26  Aligned_cols=107  Identities=7%  Similarity=0.019  Sum_probs=67.2

Q ss_pred             EEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhc-ccccEEEEcCCCcEEEEEec---------CcEEEEE
Q 005459           25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKLIAVVTS---------SLYLHIF   94 (696)
Q Consensus        25 v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wsPDg~~lav~t~---------dg~l~l~   94 (696)
                      +...+|++++. ..++.+.+|+.. .+.....+..  ..+..+ ..+.++.|||||++||.++.         ++.+.+|
T Consensus        22 ~~W~~d~~~~~-~~~~~~~~~~~~-t~~~~~~~~~--~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          22 LRWISDHEYLY-KQENNILVFNAE-YGNSSVFLEN--STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CEECSSSEEEE-ESSSCEEEEETT-TCCEEEEECT--TTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CEeCCCCEEEE-EcCCcEEEEECC-CCCEEEEEch--hhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            56778888664 467789999995 5544333322  233443 45678999999999998753         4677888


Q ss_pred             EEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEe
Q 005459           95 KVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSIS  158 (696)
Q Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~  158 (696)
                      |++++.... ...+                     ......-.+++|++.++.. .++.++++.
T Consensus        98 d~~~~~~~~-l~~~---------------------~~~~~~~~~SPDG~~ia~~-~~~~l~~~~  138 (470)
T d2bgra1          98 DLNKRQLIT-EERI---------------------PNNTQWVTWSPVGHKLAYV-WNNDIYVKI  138 (470)
T ss_dssp             ETTTTEECC-SSCC---------------------CTTEEEEEECSSTTCEEEE-ETTEEEEES
T ss_pred             ECCCCcccc-cccC---------------------CccccccccccCcceeeEe-ecccceEEE
Confidence            887543211 1000                     1112233678899888874 566776643

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.94  E-value=3.2e-08  Score=101.98  Aligned_cols=282  Identities=9%  Similarity=-0.086  Sum_probs=160.3

Q ss_pred             CCeEE-EEEcCCCcEE--EE-EecCCe--EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE----
Q 005459          257 GDAVC-ASIAPEQQIL--AV-GTRRGV--VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW----  326 (696)
Q Consensus       257 ~~~v~-v~~sp~~~~l--a~-g~~dg~--v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~----  326 (696)
                      ....+ ++..++++..  +. ...+|+  |.++|.++ ++.+.++..        +..+  .++|||||+.|++.+    
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~-~~~~~~~~~--------~~~~--~~a~spDg~~i~~~~~~~~   87 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGC-GVTLGHSLG--------AFLS--LAVAGHSGSDFALASTSFA   87 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTT-TEEEEEEEE--------CTTC--EEEECTTSSCEEEEEEEET
T ss_pred             CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCC-CcEEEEEeC--------CCCC--cceECCCCCEEEEEcccCc
Confidence            34444 6667777753  22 344555  55557666 677777776        5444  589999999998865    


Q ss_pred             ------cCCcEEEEEccCCeeEEEeecccc------cceecccccCCCCCCccceecce----eeEEEcCCCceEEEEec
Q 005459          327 ------KSRGLTVWSVSGCRLMSTIRQISL------SSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEE  390 (696)
Q Consensus       327 ------~Dg~v~vW~~~~~~~~~~l~~~~~------~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~  390 (696)
                            .|++|++||..+++.+..+..+..      .....++|+||+    +.++.+.    .+.+|++.+++......
T Consensus        88 ~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDG----k~l~va~~~~~~v~~~d~~~~~~~~~~~  163 (368)
T d1mdah_          88 RSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS----ACLLFFLFGSSAAAGLSVPGASDDQLTK  163 (368)
T ss_dssp             TTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTS----SCEEEEECSSSCEEEEEETTTEEEEEEE
T ss_pred             cccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCC----CEEEEEeCCCCeEEEEECCCCcEeEEee
Confidence                  477899999999998888764311      123467899999    6665332    78889999998887765


Q ss_pred             CCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEE
Q 005459          391 GSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA  470 (696)
Q Consensus       391 ~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~a  470 (696)
                      .+......-......+..+.|+++..+++..........              ....+..+...+..+.++++|..+.+.
T Consensus       164 ~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~g~~~~~~  229 (368)
T d1mdah_         164 SASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV--------------GAQCTGAQNCSSQAAQANYPGMLVWAV  229 (368)
T ss_dssp             CSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC--------------CCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred             ccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeee--------------ecccccccccceeecccccCcEEEEec
Confidence            543332221224456677888888777765444321111              012233445556678888888877665


Q ss_pred             eCCccEEEEccCCceEecCCcc------ceeeeEE---EeEee--eCcEEEEEEeec----CCCeEEEEEeeCCCCCc-c
Q 005459          471 GLHGLILYDIRQKKWRVFGDIT------QEQKIQS---KGLLW--LGKIIVVCNYID----SSNTYELLFYPRYHLDQ-S  534 (696)
Q Consensus       471 g~dG~i~w~~~sg~w~~f~~~~------~e~~~~v---~~~~w--~~~~lv~~~~~~----~~~~~~lr~y~~~~l~~-~  534 (696)
                      +.+.. +++...++-.......      ....+.-   ..+.+  .++.+.++....    .....+|++|+...... .
T Consensus       230 ~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~  308 (368)
T d1mdah_         230 ASSIL-QGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG  308 (368)
T ss_dssp             SSCCE-EEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred             CCCEE-EEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeE
Confidence            43322 5555444322111100      0001111   12333  345555443221    12345788998762211 1


Q ss_pred             ceeEEeecCCccEEEEccCCEEE-E-EEcCceEEEEEE
Q 005459          535 SLLCRKSLLAKPIVMDVYEDYIL-V-TYRPFDVHIFHV  570 (696)
Q Consensus       535 ~~~~~~~~~~~~l~~~~~~~~ll-v-~~~d~~~~l~~~  570 (696)
                      .+-......  -+.++++++.++ + ...++.+.+|+.
T Consensus       309 ~~~~~~~~~--~~a~spDG~~~ly~s~~~~~~v~v~D~  344 (368)
T d1mdah_         309 PISNGHDSD--AIIAAQDGASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             CCEEEEEEC--EEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred             EecCCCcee--EEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence            111222222  378889887544 4 344677777754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.86  E-value=5.4e-08  Score=103.77  Aligned_cols=108  Identities=14%  Similarity=0.194  Sum_probs=79.9

Q ss_pred             EEeCCcEEEEeeccCCceeeeeeeccee--------cCCCCeEE-EEEcCCCcEEEEEec---------CCeEEEEEccC
Q 005459          226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE--------LGSGDAVC-ASIAPEQQILAVGTR---------RGVVELYDLAE  287 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~--------~~~~~~v~-v~~sp~~~~la~g~~---------dg~v~vw~~~~  287 (696)
                      +.+||+++.  ..++.+.+|+..+++..        ..|...+. ++|||||+.||+++.         ++.+.+||+.+
T Consensus        24 W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~  101 (470)
T d2bgra1          24 WISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK  101 (470)
T ss_dssp             ECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             eCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCC
Confidence            446666554  34666777877655432        34556665 999999999999864         57889999986


Q ss_pred             CCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459          288 SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR  346 (696)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~  346 (696)
                       ++ ...+..        |.+.+....|||||+.||... |+.+.+|+..++.......
T Consensus       102 -~~-~~~l~~--------~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~  149 (470)
T d2bgra1         102 -RQ-LITEER--------IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITW  149 (470)
T ss_dssp             -TE-ECCSSC--------CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCS
T ss_pred             -Cc-cccccc--------CCccccccccccCcceeeEee-cccceEEECCCCceeeeee
Confidence             44 344555        888999999999999999965 5899999999887655443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.74  E-value=2.4e-05  Score=79.85  Aligned_cols=78  Identities=9%  Similarity=-0.031  Sum_probs=53.3

Q ss_pred             eEEEEEcCCCcEEEEEec-CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE-cCCcEEEEEc
Q 005459          259 AVCASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSV  336 (696)
Q Consensus       259 ~v~v~~sp~~~~la~g~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~-~Dg~v~vW~~  336 (696)
                      +-+++|+|||++++++.. ...|.+|+.+..+.....-.....    ......+.++|+|||+++.+.. .+++|.+|++
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~----~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~  222 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP----DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS----STTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeec----CCCCceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence            334999999998887754 458999987763433322111110    1334679999999999886655 5789999998


Q ss_pred             cCCe
Q 005459          337 SGCR  340 (696)
Q Consensus       337 ~~~~  340 (696)
                      ..+.
T Consensus       223 ~~~~  226 (365)
T d1jofa_         223 DPAT  226 (365)
T ss_dssp             CTTT
T ss_pred             cCCC
Confidence            7654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.61  E-value=1.9e-07  Score=97.06  Aligned_cols=225  Identities=10%  Similarity=0.021  Sum_probs=136.0

Q ss_pred             EEeCCcEEEEee-ccCCceeeeeeeccee----cCCCCeEE-EEEcCCCc--EEEEEecCCe-----------------E
Q 005459          226 LYSNGQLMSCSV-SKKGLKLAEFIKIDKE----LGSGDAVC-ASIAPEQQ--ILAVGTRRGV-----------------V  280 (696)
Q Consensus       226 ~s~dG~~~~~~~-~d~~~~~~~~~~~~~~----~~~~~~v~-v~~sp~~~--~la~g~~dg~-----------------v  280 (696)
                      +++||+.++++. .+.++.++|..+.+..    ..+..... ++|+|+++  +++.++++..                 +
T Consensus        79 gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~  158 (441)
T d1qnia2          79 GRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMF  158 (441)
T ss_dssp             TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEE
T ss_pred             ccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceE
Confidence            579999887665 5667788887765432    23455666 99999998  5555554432                 2


Q ss_pred             EEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC--------------------------------
Q 005459          281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS--------------------------------  328 (696)
Q Consensus       281 ~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D--------------------------------  328 (696)
                      ..+|..+ .+...++..         .+....++|+|||+++++.+.+                                
T Consensus       159 ~~iD~~t-~~v~~qI~v---------~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~d  228 (441)
T d1qnia2         159 TAIDAET-MDVAWQVIV---------DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKA  228 (441)
T ss_dssp             EEEETTT-CSEEEEEEE---------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHT
T ss_pred             EeecCcc-ceeeEEEec---------CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecC
Confidence            3455554 444444444         2457889999999999888754                                


Q ss_pred             ---------CcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce-ecce---eeEEEcCCCce-----------
Q 005459          329 ---------RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT---SMMQWDEYGYR-----------  384 (696)
Q Consensus       329 ---------g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l-~sg~---~~~~W~~~~~~-----------  384 (696)
                               +.+.++...+...+.++..+  .....+.++||+    +++ ++|.   ++.+|+.+..+           
T Consensus       229 Gk~~~v~~~~v~vvd~~~~~~v~~~IPvg--ksPhGv~vSPDG----kyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~  302 (441)
T d1qnia2         229 GNFKTIGDSKVPVVDGRGESEFTRYIPVP--KNPHGLNTSPDG----KYFIANGKLSPTVSVIAIDKLDDLFEDKIELRD  302 (441)
T ss_dssp             TCCBCCTTCCCCEEECSSSCSSEEEECCB--SSCCCEEECTTS----CEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGG
T ss_pred             CCEEEeCCCCcEEEEcccCCceEEEEeCC--CCccCceECCCC----CEEEEeCCcCCcEEEEEeehhhhHhhccCCcce
Confidence                     34455555555566666654  235678899998    765 4443   88889875421           


Q ss_pred             EEEEe-cCCcceE-EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee-ecCCCceEEEEE
Q 005459          385 LYAIE-EGSSERV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY-ISQNWPVQHVAA  460 (696)
Q Consensus       385 l~~~~-~~~~~~v-~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~I~~va~  460 (696)
                      .+... +..-..+ .+|+. +....|...|..+..|++...-.   .+.+ +.....|+.+  +-.| .+|...+.+.++
T Consensus       303 ~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~---~~~~-~~~~~v~~~~--~v~y~~GH~~~~~~~t~  376 (441)
T d1qnia2         303 TIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIK---HYNG-DRVNYIRQKL--DVQYQPGHNHASLTESR  376 (441)
T ss_dssp             GEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHH---HHTT-CCCCCEEEEE--ECSSCEEEEEETTTTST
T ss_pred             EEEeecccccCcccceecCCceEEEcccccceEEEeccchhhh---hhcc-CCCceeEecc--ccccCCCCCcccccccc
Confidence            01110 0001112 45666 66677778888888888632110   0000 0111122222  2234 588888888999


Q ss_pred             cCCCCEEEEEeC
Q 005459          461 SKDGMFLAVAGL  472 (696)
Q Consensus       461 s~dG~~la~ag~  472 (696)
                      +|||+||+++..
T Consensus       377 ~pdGk~l~s~~k  388 (441)
T d1qnia2         377 DADGKWLVVLSK  388 (441)
T ss_dssp             TCCCCEEEEEES
T ss_pred             CCCCcEEEecCc
Confidence            999999999953

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.47  E-value=1.2e-05  Score=82.06  Aligned_cols=264  Identities=8%  Similarity=-0.036  Sum_probs=130.7

Q ss_pred             eEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec---CcEEEEEEEEec
Q 005459           23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS---SLYLHIFKVQIT   99 (696)
Q Consensus        23 ~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~---dg~l~l~~l~~~   99 (696)
                      .-++|+|||++|.++..+.+..|.....+. +.......    ..+....++++||++.+.+.+.   .+.+..+.+...
T Consensus        43 s~la~s~d~~~ly~~~~~~~~~~~i~~~~~-~~~~~~~~----~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          43 SWMTFDHERKNIYGAAMKKWSSFAVKSPTE-IVHEASHP----IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             SEEEECTTSSEEEEEEBTEEEEEEEEETTE-EEEEEEEE----CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CEEEEcCCCCEEEEEeCCcEEEEEEeCCCC-eEEEeeec----CCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence            348899999988878777788887752222 22221111    1133457889999996555442   344544443211


Q ss_pred             Ccccc-cCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEec-CCcEEEEecCCccccceeeccCCCCCc
Q 005459          100 EKSIQ-IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSS  177 (696)
Q Consensus       100 ~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~-~g~i~~~~w~~~~~~~~~~~~~p~~~~  177 (696)
                      ..... ......  ..+.......+..   ......-..+.+++++++++.. ...|.++.++.........        
T Consensus       118 ~~~~~~~~~~~~--~~~~~~~~~~~~q---~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~--------  184 (365)
T d1jofa_         118 AGYGNVFSVSET--GKLEKNVQNYEYQ---ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG--------  184 (365)
T ss_dssp             CCEEEEEEECTT--CCEEEEEEEEECC---TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE--------
T ss_pred             CCcceeEeeeec--ceecCcccCcccC---CCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecc--------
Confidence            11000 000000  0000000000000   0111122356788998888754 3467666655322111100        


Q ss_pred             ccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEee-ccCCceeeeeeecce----
Q 005459          178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKIDK----  252 (696)
Q Consensus       178 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~-~d~~~~~~~~~~~~~----  252 (696)
                         .                    ..........+.+.          ++|||+.+.+.. .+.++.+++....+.    
T Consensus       185 ---~--------------------~~~~~~g~gPr~i~----------f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~  231 (365)
T d1jofa_         185 ---S--------------------VDAPDPGDHPRWVA----------MHPTGNYLYALMEAGNRICEYVIDPATHMPVY  231 (365)
T ss_dssp             ---E--------------------EECSSTTCCEEEEE----------ECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             ---c--------------------eeecCCCCceEEEE----------ECCCCceEEEeccCCCEEEEEEecCCCceEEE
Confidence               0                    00001122344444          566666544433 344454444322110    


Q ss_pred             -------e-----------cCCCCeEE-EEEcCCCcEEEEEec------CCeEEEEEccCCCceeeEEeeccCCCCCCCC
Q 005459          253 -------E-----------LGSGDAVC-ASIAPEQQILAVGTR------RGVVELYDLAESASLIRTVSLYDWGYSMDDT  307 (696)
Q Consensus       253 -------~-----------~~~~~~v~-v~~sp~~~~la~g~~------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~  307 (696)
                             +           ..+..... +.++|||++|.++..      .+.|..|+++..+...+.....+..   ...
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~---~~G  308 (365)
T d1jofa_         232 THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP---TSG  308 (365)
T ss_dssp             EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS---SCC
T ss_pred             EeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE---cCC
Confidence                   0           01112233 899999999988753      2348888887634332222211100   022


Q ss_pred             CCeEEEEECC-CCCeEEEE-EcCCcEEEEEccCCe
Q 005459          308 GPVSCIAWTP-DNSAFAVG-WKSRGLTVWSVSGCR  340 (696)
Q Consensus       308 g~V~~l~~sp-dg~~lasg-~~Dg~v~vW~~~~~~  340 (696)
                      +....++++| ||++|+++ ..+++|.+|++.+..
T Consensus       309 ~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         309 GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            3457799998 89988776 566899999987654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=1.3e-05  Score=77.49  Aligned_cols=88  Identities=11%  Similarity=0.096  Sum_probs=57.9

Q ss_pred             EEEcCCCcEEEEEecC-CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC---CcEEEEEcc
Q 005459          262 ASIAPEQQILAVGTRR-GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVS  337 (696)
Q Consensus       262 v~~sp~~~~la~g~~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D---g~v~vW~~~  337 (696)
                      ..++|+++.++..+.+ |...+|..+......+ +..        +.+......|||||+.||-.+..   ..+.++++.
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~--------~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d  246 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS--------STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  246 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC--------CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             cccccccceeEEEeecCCceeeeEeecccccce-Eee--------cCccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            8999999998887665 4555555554233333 333        56677889999999998755543   357888988


Q ss_pred             CCeeEEEeecccccceecccccC
Q 005459          338 GCRLMSTIRQISLSSISSPIVKP  360 (696)
Q Consensus       338 ~~~~~~~l~~~~~~~v~~~~~sp  360 (696)
                      ++... .|... ...+..++|+|
T Consensus       247 g~~~~-~lt~~-~g~~~~p~WSP  267 (269)
T d2hqsa1         247 GRFKA-RLPAT-DGQVKFPAWSP  267 (269)
T ss_dssp             SCCEE-ECCCS-SSEEEEEEECC
T ss_pred             CCCEE-EEeCC-CCcEEeEEeCC
Confidence            87643 34333 34456666766

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=5.4e-05  Score=72.88  Aligned_cols=58  Identities=22%  Similarity=0.249  Sum_probs=41.9

Q ss_pred             EEEEcCCCcEEEEEecCC---eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459          261 CASIAPEQQILAVGTRRG---VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS  328 (696)
Q Consensus       261 ~v~~sp~~~~la~g~~dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D  328 (696)
                      .-+|||||+.||....+.   .+.+.+..  +...+.+..        +.+......|||||+.++.....
T Consensus        43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~--~~~~~~~~~--------~~~~~~~~~~spdg~~i~~~~~~  103 (269)
T d2hqsa1          43 SPAWSPDGSKLAYVTFESGRSALVIQTLA--NGAVRQVAS--------FPRHNGAPAFSPDGSKLAFALSK  103 (269)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETT--TCCEEEEEC--------CSSCEEEEEECTTSSEEEEEECT
T ss_pred             eeEECCCCCEEEEEEeeccCcceeeeecc--cCceeEEee--------eecccccceecCCCCeeeEeeec
Confidence            389999999999875543   34455544  344445555        77889999999999999876643

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.32  E-value=3.3e-05  Score=76.43  Aligned_cols=66  Identities=8%  Similarity=0.031  Sum_probs=47.8

Q ss_pred             EEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEec
Q 005459           25 IYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT   99 (696)
Q Consensus        25 v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~   99 (696)
                      ++++|||+++++. .+++|..|+.. ..  ...+..      ..+....++|+|||+++++...++.+..++....
T Consensus        33 iAv~pdG~l~vt~~~~~~I~~i~p~-g~--~~~~~~------~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~   99 (302)
T d2p4oa1          33 LASAPDGTIFVTNHEVGEIVSITPD-GN--QQIHAT------VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS   99 (302)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTT-CC--EEEEEE------CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT
T ss_pred             EEECCCCCEEEEeCCCCEEEEEeCC-CC--EEEEEc------CCCCcceEEEcCCCCeEEEecCCceEEEEEeccc
Confidence            7899999999887 46777777754 22  222211      1245678999999999999888888888887654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.30  E-value=7.5e-06  Score=84.75  Aligned_cols=204  Identities=9%  Similarity=-0.023  Sum_probs=122.4

Q ss_pred             CCCeEE-EEEcCCCcEEEEE-ecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC--eEEEEEcCC--
Q 005459          256 SGDAVC-ASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSR--  329 (696)
Q Consensus       256 ~~~~v~-v~~sp~~~~la~g-~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~--~lasg~~Dg--  329 (696)
                      |..... ..++|||++|.+. ..++.|.++|+++ .+..+.+..       .+......++|+|||+  +++.++++.  
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t-~k~~~ii~i-------P~g~gphgi~~spdg~t~YV~~~~~~~v~  141 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDI-MKTDKITHI-------PNVQAIHGLRLQKVPKTNYVFCNAEFVIP  141 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTT-TEEEEEEEC-------TTCCCEEEEEECCSSBCCEEEEEECSCEE
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCC-CcEeeEEec-------CCCCCccceEEeccCCEEEEEeccCCccc
Confidence            444444 7778999988554 5788999999998 666666654       1566799999999999  455445432  


Q ss_pred             ---------------cEEEEEccCCeeEEEeecccccceecccccCCCC-----C-Cc----------------------
Q 005459          330 ---------------GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD-----C-KY----------------------  366 (696)
Q Consensus       330 ---------------~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~-----~-~~----------------------  366 (696)
                                     .+..+|..+.....++.-.  .....++++|++.     + +.                      
T Consensus       142 ~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~--~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~  219 (441)
T d1qnia2         142 QPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD--GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNV  219 (441)
T ss_dssp             SSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEH
T ss_pred             ccCcccccccccccceEEeecCccceeeEEEecC--CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCc
Confidence                           2345777777666665543  2356677777772     0 00                      


Q ss_pred             ----------cceecc-e-eeEEEcCCCceEEEEecCCcceE-EEEec-ceee-eeccCCCCceeeeeeecCCeEEEEec
Q 005459          367 ----------EPLMSG-T-SMMQWDEYGYRLYAIEEGSSERV-LIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQS  431 (696)
Q Consensus       367 ----------~~l~sg-~-~~~~W~~~~~~l~~~~~~~~~~v-~~~~~-~~~~-~s~~~d~~~~~w~~~~~~~~~~~~~~  431 (696)
                                +....+ . ...++...+.+++.........- +.+++ ++.+ +++..++++.+|++....+.+   .+
T Consensus       220 p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~---~~  296 (441)
T d1qnia2         220 ERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLF---ED  296 (441)
T ss_dssp             HHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHT---TT
T ss_pred             cceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHh---hc
Confidence                      011111 1 34445545444444443322222 67777 7765 678889999999975432200   00


Q ss_pred             CCCCcceeEEeecCeeeecC---CCceEEEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459          432 EDTDELKILHLNLPVSYISQ---NWPVQHVAASKDGMFLAVAGLHGLI-LYDIR  481 (696)
Q Consensus       432 ~~~~~~~w~~~~~~~~~~~~---~~~I~~va~s~dG~~la~ag~dG~i-~w~~~  481 (696)
                      .  .+.       .....++   .-.....+|+++|....+.+-|..+ .|++.
T Consensus       297 ~--~~~-------~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         297 K--IEL-------RDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             S--SCG-------GGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             c--CCc-------ceEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            0  000       0001111   1123567999999999999999999 99985

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.19  E-value=0.0001  Score=72.76  Aligned_cols=113  Identities=10%  Similarity=0.019  Sum_probs=80.6

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecce-ecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK-ELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG  301 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~v-~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~  301 (696)
                      +++.+||+++++...++++..++...... ........ .++|+|||+++++...++.+..++..........+...   
T Consensus        33 iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~---  109 (302)
T d2p4oa1          33 LASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL---  109 (302)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC---
T ss_pred             EEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecccc---
Confidence            56899999999888888777766432211 12223334 49999999999999999999888876532323333221   


Q ss_pred             CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeE
Q 005459          302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM  342 (696)
Q Consensus       302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~  342 (696)
                         ...+..+.+++.+||+++++-+.++.+..++..++...
T Consensus       110 ---~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~  147 (302)
T d2p4oa1         110 ---PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS  147 (302)
T ss_dssp             ---TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             ---CCccccceeEEccCCCEEeeccccccceeeeccCCcce
Confidence               13556899999999999999888888888888777543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.08  E-value=0.0006  Score=67.43  Aligned_cols=66  Identities=8%  Similarity=0.114  Sum_probs=50.7

Q ss_pred             EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE-EEcCCcEEEEEc
Q 005459          262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-GWKSRGLTVWSV  336 (696)
Q Consensus       262 v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las-g~~Dg~v~vW~~  336 (696)
                      +++.++|++.++....+.|.+||.+. +..+..+..        .....++++|.||++.|.. .+.++.|...++
T Consensus       231 iavD~~GnlyVa~~~~g~I~~~dp~~-g~~~~~i~~--------p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         231 MDFDEDNNLLVANWGSSHIEVFGPDG-GQPKMRIRC--------PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EEEBTTCCEEEEEETTTEEEEECTTC-BSCSEEEEC--------SSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             eEEecCCcEEEEEcCCCEEEEEeCCC-CEEEEEEEC--------CCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence            88999999998888899999999775 556666665        4567899999999986654 455566655554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.03  E-value=0.00094  Score=64.64  Aligned_cols=104  Identities=13%  Similarity=0.113  Sum_probs=67.0

Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeeccee-----cCCC-CeEEEEEcCCCcEEEEEec-CCeEEEEEccCCCceeeEEee
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSG-DAVCASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSL  297 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-----~~~~-~~v~v~~sp~~~~la~g~~-dg~v~vw~~~~~~~~~~~~~~  297 (696)
                      ++.++|+++++......+++++... +.+     .+.. .+..+++.++|+++++-.. ++.|.+|+.+  ++.+.++..
T Consensus       163 ~~d~~g~i~v~d~~~~~V~~~d~~G-~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~--G~~~~~~~~  239 (279)
T d1q7fa_         163 VVNDKQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALES  239 (279)
T ss_dssp             EECSSSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEE
T ss_pred             eeccceeEEeeeccccceeeeecCC-ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC--CCEEEEEeC
Confidence            3556666666655555555554321 111     1222 3455899999998877544 5579999843  677777654


Q ss_pred             ccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459          298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       298 ~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~  338 (696)
                      ..      .......|++.|||++++ +..++.|++|....
T Consensus       240 ~~------~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         240 KV------KHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQ  273 (279)
T ss_dssp             SS------CCSCEEEEEEETTTEEEE-EETTTEEEEEECSC
T ss_pred             CC------CCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeee
Confidence            11      234578899999997555 55789999998654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=0.0031  Score=65.77  Aligned_cols=70  Identities=10%  Similarity=0.186  Sum_probs=43.9

Q ss_pred             EEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec---------CcEEEEEEEE
Q 005459           27 FKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS---------SLYLHIFKVQ   97 (696)
Q Consensus        27 fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~---------dg~l~l~~l~   97 (696)
                      ..+|+.++..-.++.|.+|++. .+.....+..  ..+... .+....|||||+.|+..+.         .+.+.+||+.
T Consensus        24 W~~~~~~~~~~~~g~i~~~~~~-~~~~~~l~~~--~~~~~~-~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          24 WISDTEFIYREQKGTVRLWNVE-TNTSTVLIEG--KKIESL-RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             BSSSSCBCCCCSSSCEEEBCGG-GCCCEEEECT--TTTTTT-TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             EeCCCcEEEEeCCCcEEEEECC-CCCEEEEEcC--cccccc-ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            4566766654566789999985 3332111221  222222 3457789999999988753         5678888887


Q ss_pred             ecC
Q 005459           98 ITE  100 (696)
Q Consensus        98 ~~~  100 (696)
                      .+.
T Consensus       100 ~~~  102 (465)
T d1xfda1         100 HGD  102 (465)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            655

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.98  E-value=0.0026  Score=61.28  Aligned_cols=79  Identities=10%  Similarity=0.157  Sum_probs=61.2

Q ss_pred             eEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459          259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       259 ~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~  338 (696)
                      +..+++.++++++++....+.+.+++.+  ++.+.++...      .+......+++.++|+.+++.+..+.|.++|..+
T Consensus       116 p~~~avd~~G~i~v~~~~~~~~~~~~~~--g~~~~~~g~~------~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G  187 (279)
T d1q7fa_         116 PRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGCS------KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG  187 (279)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECT------TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC
T ss_pred             cceeccccCCcEEEEeeccceeeEeccC--Cceeeccccc------ccccccceeeeccceeEEeeeccccceeeeecCC
Confidence            4458999999999988888888888754  5666655431      2566788999999999999999999999999876


Q ss_pred             CeeEEEee
Q 005459          339 CRLMSTIR  346 (696)
Q Consensus       339 ~~~~~~l~  346 (696)
                      . .+.++.
T Consensus       188 ~-~~~~~g  194 (279)
T d1q7fa_         188 Q-YLRQIG  194 (279)
T ss_dssp             C-EEEEES
T ss_pred             c-eeeeec
Confidence            5 444543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.94  E-value=0.0002  Score=68.89  Aligned_cols=148  Identities=7%  Similarity=0.003  Sum_probs=83.5

Q ss_pred             EEEeCCcEEEEeec-cCCceeeeeeecc-ee---cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459          225 VLYSNGQLMSCSVS-KKGLKLAEFIKID-KE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD  299 (696)
Q Consensus       225 ~~s~dG~~~~~~~~-d~~~~~~~~~~~~-~~---~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~  299 (696)
                      ++.+||+++++... .+.+...+..... ..   .+...+..++++++++++++...++.+++++-.+ ...+....   
T Consensus        20 avd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~-~~~~~~~~---   95 (260)
T d1rwia_          20 AVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSN-NQTVLPFD---   95 (260)
T ss_dssp             EECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCS-CCEECCCC---
T ss_pred             EEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeecc-ceeeeeee---
Confidence            46677776665432 2333333222111 11   2223444589999999988887777777665433 22221111   


Q ss_pred             CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459          300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM  376 (696)
Q Consensus       300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~  376 (696)
                            .......|++.++|+.+++-..+..+...+..+.... .....+......++++|++    ..+++..   .+.
T Consensus        96 ------~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g----~~~v~~~~~~~i~  164 (260)
T d1rwia_          96 ------GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-VLPFTGLNDPDGVAVDNSG----NVYVTDTDNNRVV  164 (260)
T ss_dssp             ------SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE-ECCCCSCCSCCEEEECTTC----CEEEEEGGGTEEE
T ss_pred             ------eeeecccccccccceeEeeccccccccccccccceee-eeeecccCCcceeeecCCC----CEeeecccccccc
Confidence                  2345789999999998887777777777777654322 2221223345667777776    5544322   566


Q ss_pred             EEcCCCceEEE
Q 005459          377 QWDEYGYRLYA  387 (696)
Q Consensus       377 ~W~~~~~~l~~  387 (696)
                      .++.++.....
T Consensus       165 ~~d~~~~~~~~  175 (260)
T d1rwia_         165 KLEAESNNQVV  175 (260)
T ss_dssp             EECTTTCCEEE
T ss_pred             ccccccceeee
Confidence            67766554443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.94  E-value=0.00026  Score=68.04  Aligned_cols=105  Identities=5%  Similarity=0.005  Sum_probs=66.5

Q ss_pred             EEEeCCcEEEEeeccCCceeeeeeeccee----cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459          225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW  300 (696)
Q Consensus       225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~  300 (696)
                      ++.++|+++++...+..+..++.......    ..-..+.-+++.++|+++++-..++.|..++.+.  .....+..   
T Consensus       146 ~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~--~~~~~~~~---  220 (260)
T d1rwia_         146 AVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS--TTSTVLPF---  220 (260)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC--SCCEECCC---
T ss_pred             eecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC--CeEEEEcc---
Confidence            45677777666655555555554322111    1123344599999999999988899988887654  22222222   


Q ss_pred             CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459          301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG  338 (696)
Q Consensus       301 ~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~  338 (696)
                          ..-.....|++++||+.+++-+.++.|+..+..+
T Consensus       221 ----~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         221 ----TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             ----CSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             ----CCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence                0224568999999999888877777776555443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.84  E-value=0.0013  Score=64.83  Aligned_cols=96  Identities=17%  Similarity=0.230  Sum_probs=64.2

Q ss_pred             EEEcCCCc-----EEEEEecCCeEEEEEccCCCceee--EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459          262 ASIAPEQQ-----ILAVGTRRGVVELYDLAESASLIR--TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW  334 (696)
Q Consensus       262 v~~sp~~~-----~la~g~~dg~v~vw~~~~~~~~~~--~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW  334 (696)
                      ++|+|+++     +.++-+..+.|..|+++..+....  .+..  .  ...+.+....|++.++|+..++.+..+.|.++
T Consensus       177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~--~--~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~  252 (314)
T d1pjxa_         177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGH--I--PGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEE--C--CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEE--c--cccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence            78888764     566667889999999875333211  1111  0  01123345679999999998888888999999


Q ss_pred             EccCCeeEEEeecccccceecccccCCC
Q 005459          335 SVSGCRLMSTIRQISLSSISSPIVKPNQ  362 (696)
Q Consensus       335 ~~~~~~~~~~l~~~~~~~v~~~~~sp~~  362 (696)
                      |..++....++... ....++++|.|++
T Consensus       253 dp~~g~~~~~i~~p-~~~~t~~afg~d~  279 (314)
T d1pjxa_         253 GPDGGQPKMRIRCP-FEKPSNLHFKPQT  279 (314)
T ss_dssp             CTTCBSCSEEEECS-SSCEEEEEECTTS
T ss_pred             eCCCCEEEEEEECC-CCCEEEEEEeCCC
Confidence            99988776666543 2345666666654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.82  E-value=0.0022  Score=61.13  Aligned_cols=112  Identities=13%  Similarity=0.111  Sum_probs=58.0

Q ss_pred             EEeC--CcEEEEeeccCCceeeeeeecc--eecCCCCeEE-EEEcCCCcEEEEEec-CC-----eEEEEEccCCCceeeE
Q 005459          226 LYSN--GQLMSCSVSKKGLKLAEFIKID--KELGSGDAVC-ASIAPEQQILAVGTR-RG-----VVELYDLAESASLIRT  294 (696)
Q Consensus       226 ~s~d--G~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~v~-v~~sp~~~~la~g~~-dg-----~v~vw~~~~~~~~~~~  294 (696)
                      .+||  |+.++..+.+ .+.+.+...++  .+..+..... .+|||||+.||.... ++     .|.+++...  ...+.
T Consensus         6 ~sPdi~G~~v~f~~~~-dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~--g~~~~   82 (281)
T d1k32a2           6 LNPDIHGDRIIFVCCD-DLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN--GEIKR   82 (281)
T ss_dssp             EEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT--TEEEE
T ss_pred             cCCCCCCCEEEEEeCC-cEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecC--CceEE
Confidence            4566  6665554432 23333433322  2333344444 899999999997643 22     355555544  33332


Q ss_pred             EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC------CcEEEEEccCCee
Q 005459          295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS------RGLTVWSVSGCRL  341 (696)
Q Consensus       295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D------g~v~vW~~~~~~~  341 (696)
                      +....- ............+|+|||+.|+.....      ..+...+..++..
T Consensus        83 lt~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  134 (281)
T d1k32a2          83 ITYFSG-KSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF  134 (281)
T ss_dssp             CCCCCE-EEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred             eeecCC-CccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee
Confidence            321000 000123346788999999999875332      1244555555543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.001  Score=69.61  Aligned_cols=78  Identities=10%  Similarity=0.209  Sum_probs=53.5

Q ss_pred             eEEEEEcCCCcEEEEEec---------CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC
Q 005459          259 AVCASIAPEQQILAVGTR---------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR  329 (696)
Q Consensus       259 ~v~v~~sp~~~~la~g~~---------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg  329 (696)
                      +....||||++.|+....         .+.+.+||+.+ +... .+....     ...+.+....|||||+.||-... +
T Consensus        63 ~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~-~~~~-~l~~~~-----~~~~~l~~~~wSPDG~~iafv~~-~  134 (465)
T d1xfda1          63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH-GDPQ-SLDPPE-----VSNAKLQYAGWGPKGQQLIFIFE-N  134 (465)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS-CCCE-ECCCTT-----CCSCCCSBCCBCSSTTCEEEEET-T
T ss_pred             cceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC-Ccee-eccCcc-----CCccccceeeeccCCceEEEEec-c
Confidence            344789999999888753         57888999886 4332 232210     13445667899999999988764 7


Q ss_pred             cEEEEEccCCeeEEE
Q 005459          330 GLTVWSVSGCRLMST  344 (696)
Q Consensus       330 ~v~vW~~~~~~~~~~  344 (696)
                      .+.+.+..++...+.
T Consensus       135 nl~~~~~~~~~~~~l  149 (465)
T d1xfda1         135 NIYYCAHVGKQAIRV  149 (465)
T ss_dssp             EEEEESSSSSCCEEE
T ss_pred             eEEEEecCCCceEEE
Confidence            788888777654433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.64  E-value=0.0036  Score=59.58  Aligned_cols=68  Identities=15%  Similarity=0.203  Sum_probs=48.1

Q ss_pred             EEcCC--CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE-cCC-----cEEEE
Q 005459          263 SIAPE--QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSR-----GLTVW  334 (696)
Q Consensus       263 ~~sp~--~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~-~Dg-----~v~vW  334 (696)
                      ..|||  |+.+|..+ +|.|.++|++. ++ .+.+..        +.+.+...+|||||+.||-.. .++     .|.+.
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~-g~-~~~Lt~--------~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~   73 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKS-GS-TRKIVS--------NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFY   73 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTT-CC-EEEEEC--------SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCC-CC-EEEEec--------CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEE
Confidence            35899  99999865 56787788875 44 445655        678899999999999998543 332     25556


Q ss_pred             EccCCee
Q 005459          335 SVSGCRL  341 (696)
Q Consensus       335 ~~~~~~~  341 (696)
                      +..++..
T Consensus        74 ~~~~g~~   80 (281)
T d1k32a2          74 NGENGEI   80 (281)
T ss_dssp             ETTTTEE
T ss_pred             EecCCce
Confidence            6666653

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.41  E-value=0.012  Score=57.72  Aligned_cols=230  Identities=10%  Similarity=0.056  Sum_probs=115.1

Q ss_pred             EEEEeCCcEEEEeeccCCceeeeeeecce---ecCC-CCeEEEEEcCCCcEEEEEecC--CeEEEEEccCCCceeeEEee
Q 005459          224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGS-GDAVCASIAPEQQILAVGTRR--GVVELYDLAESASLIRTVSL  297 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~-~~~v~v~~sp~~~~la~g~~d--g~v~vw~~~~~~~~~~~~~~  297 (696)
                      .++.++|+++++....+.+..++....+.   .... ..+..+++++||+++++...+  ....++.++..+..+.....
T Consensus        45 ~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~  124 (319)
T d2dg1a1          45 LNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE  124 (319)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred             CEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeecc
Confidence            45678888888776677676665433211   1122 234449999999998876543  33445544432333333322


Q ss_pred             ccCCCCCCCCCCeEEEEECCCCCeEEEEEcC------CcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce-e
Q 005459          298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS------RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-M  370 (696)
Q Consensus       298 ~~~~~~~~h~g~V~~l~~spdg~~lasg~~D------g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l-~  370 (696)
                      ..     .-....+.+++.|||+..++....      +.+..++..++.......+  ....+.++|+|++    +.+ +
T Consensus       125 ~~-----~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~--~~~pnGia~s~dg----~~lyv  193 (319)
T d2dg1a1         125 DL-----STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDE----KVLWV  193 (319)
T ss_dssp             SS-----SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTS----SEEEE
T ss_pred             CC-----CcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeec--cceeeeeeecccc----ceEEE
Confidence            00     012357899999999877764321      2344444444432222221  2234556777776    322 2


Q ss_pred             cce---eeEEEcCCCc-eEEEEecCCcceE-EEEecce--eeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEee
Q 005459          371 SGT---SMMQWDEYGY-RLYAIEEGSSERV-LIFSFGK--CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN  443 (696)
Q Consensus       371 sg~---~~~~W~~~~~-~l~~~~~~~~~~v-~~~~~~~--~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~  443 (696)
                      +-.   ++..++.... .......   ..+ ..+.-..  .=++...++  .+|....+..++.++....   .....+.
T Consensus       194 ad~~~~~I~~~d~~~~g~~~~~~~---~~~~~~~~~~~~PdGl~vD~~G--~l~Va~~~~g~V~~~~p~G---~~l~~i~  265 (319)
T d2dg1a1         194 TETTANRLHRIALEDDGVTIQPFG---ATIPYYFTGHEGPDSCCIDSDD--NLYVAMYGQGRVLVFNKRG---YPIGQIL  265 (319)
T ss_dssp             EEGGGTEEEEEEECTTSSSEEEEE---EEEEEECCSSSEEEEEEEBTTC--CEEEEEETTTEEEEECTTS---CEEEEEE
T ss_pred             ecccCCceEEEEEcCCCceecccc---ceeeeccCCccceeeeeEcCCC--CEEEEEcCCCEEEEECCCC---cEEEEEe
Confidence            211   3334433211 0000000   000 0000000  001222233  4566667777776665432   2335566


Q ss_pred             cCeeeecCCCceEEEEEcCCCCEEEEEeC
Q 005459          444 LPVSYISQNWPVQHVAASKDGMFLAVAGL  472 (696)
Q Consensus       444 ~~~~~~~~~~~I~~va~s~dG~~la~ag~  472 (696)
                      +|..-.++...+.+++|.+++..+.+...
T Consensus       266 ~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         266 IPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            77655556666789999998877665543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.36  E-value=0.019  Score=56.12  Aligned_cols=92  Identities=12%  Similarity=0.122  Sum_probs=59.7

Q ss_pred             EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC----CcEEEEEcc
Q 005459          262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS----RGLTVWSVS  337 (696)
Q Consensus       262 v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D----g~v~vW~~~  337 (696)
                      ++|.++|++..+-..+|.|.-|+.+. ......+..        ..+....|+++|||+.+++...+    +.+...+..
T Consensus        45 ~~~D~~G~Ly~~D~~~g~I~ri~p~g-~~~~~~~~~--------~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~  115 (319)
T d2dg1a1          45 LNFDRQGQLFLLDVFEGNIFKINPET-KEIKRPFVS--------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN  115 (319)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTT-CCEEEEEEC--------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred             CEECCCCCEEEEECCCCEEEEEECCC-CeEEEEEeC--------CCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCC
Confidence            78999999888888899888888765 343443333        45668899999999988776432    334444555


Q ss_pred             CCeeEEEeec-ccccceecccccCCC
Q 005459          338 GCRLMSTIRQ-ISLSSISSPIVKPNQ  362 (696)
Q Consensus       338 ~~~~~~~l~~-~~~~~v~~~~~sp~~  362 (696)
                      +......... ......+.++++|++
T Consensus       116 ~~~~~~~~~~~~~~~~~nd~~~d~~G  141 (319)
T d2dg1a1         116 GDNLQDIIEDLSTAYCIDDMVFDSKG  141 (319)
T ss_dssp             SCSCEEEECSSSSCCCEEEEEECTTS
T ss_pred             CceeeeeccCCCcccCCcceeEEecc
Confidence            5544333322 112335566777777

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.32  E-value=0.022  Score=56.96  Aligned_cols=109  Identities=16%  Similarity=0.031  Sum_probs=66.6

Q ss_pred             EEEEeCCcEEEEeeccC-----------Cceeeeeeeccee------cCCCC-eEEEEEcCCCcEEEEEecC-CeEEEEE
Q 005459          224 FVLYSNGQLMSCSVSKK-----------GLKLAEFIKIDKE------LGSGD-AVCASIAPEQQILAVGTRR-GVVELYD  284 (696)
Q Consensus       224 ~~~s~dG~~~~~~~~d~-----------~~~~~~~~~~~~~------~~~~~-~v~v~~sp~~~~la~g~~d-g~v~vw~  284 (696)
                      +++..||++++.+..+.           .+.+||..+.+-.      ..+.. +...++.+++++++.|+.+ .++.+||
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence            44567899998877421           1335665533110      11211 2236788999999999766 5899999


Q ss_pred             ccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC------CcEEEEEccCCe
Q 005459          285 LAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS------RGLTVWSVSGCR  340 (696)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D------g~v~vW~~~~~~  340 (696)
                      ..+ ... ..+..  .+    ....-...+..+||+.++.|+.+      ..+.+||..+..
T Consensus       105 ~~~-~~w-~~~~~--~~----~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         105 SSS-DSW-IPGPD--MQ----VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             GGG-TEE-EECCC--CS----SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             Ccc-Ccc-ccccc--cc----ccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            876 332 21111  11    11122456778899999998753      358899988765

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.87  E-value=0.04  Score=53.13  Aligned_cols=127  Identities=10%  Similarity=0.072  Sum_probs=75.0

Q ss_pred             EEeCCcEEEEeeccCC----ceeeeeeecce--e-cCCCCeEEEEEcCCCcEE-EEEecCCeEEEEEccCCCce----ee
Q 005459          226 LYSNGQLMSCSVSKKG----LKLAEFIKIDK--E-LGSGDAVCASIAPEQQIL-AVGTRRGVVELYDLAESASL----IR  293 (696)
Q Consensus       226 ~s~dG~~~~~~~~d~~----~~~~~~~~~~~--~-~~~~~~v~v~~sp~~~~l-a~g~~dg~v~vw~~~~~~~~----~~  293 (696)
                      +.++|+++++......    -.++....++.  . .+...+--++++++++.+ .+-+..+.|..|+++.....    ..
T Consensus       110 vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~  189 (295)
T d2ghsa1         110 MHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE  189 (295)
T ss_dssp             ECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE
T ss_pred             ECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceE
Confidence            6677777776543221    12333222211  1 122223338999999855 55566789999988642211    11


Q ss_pred             EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceeccccc
Q 005459          294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK  359 (696)
Q Consensus       294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~s  359 (696)
                      .+..     ..+-.+....+++..+|+..++.+..+.|..+|.. ++++..+.-. ...+++++|-
T Consensus       190 ~~~~-----~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~~~~~i~lP-~~~~T~~~FG  248 (295)
T d2ghsa1         190 VFID-----STGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVP-GKQTTCPAFI  248 (295)
T ss_dssp             EEEE-----CTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECS-CSBEEEEEEE
T ss_pred             EEec-----cCcccccccceEEcCCCCEEeeeeCCCceEEecCC-CcEeeEecCC-CCceEEEEEe
Confidence            1111     00134567889999999999998888899999975 4556666543 2346666663

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.77  E-value=1.7  Score=40.85  Aligned_cols=107  Identities=10%  Similarity=-0.001  Sum_probs=60.3

Q ss_pred             eCCcEEEEeeccCCceeeeeeeccee--cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCC
Q 005459          228 SNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD  305 (696)
Q Consensus       228 ~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~  305 (696)
                      .+|+++++-...+.+..|+...++..  .--....++++.+++++++. +.+ -+.++|..+ ++.. .+....   ...
T Consensus        28 ~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~t-g~~~-~l~~~~---~~~  100 (295)
T d2ghsa1          28 ASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTAT-GVLT-LHAELE---SDL  100 (295)
T ss_dssp             TTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTT-CCEE-EEECSS---TTC
T ss_pred             CCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeeccc-ceee-EEeeee---cCC
Confidence            35666665555566666665443221  11123445888899988765 555 477888876 4432 232211   001


Q ss_pred             CCCCeEEEEECCCCCeEEEEEcC----CcEEEEEccCCee
Q 005459          306 DTGPVSCIAWTPDNSAFAVGWKS----RGLTVWSVSGCRL  341 (696)
Q Consensus       306 h~g~V~~l~~spdg~~lasg~~D----g~v~vW~~~~~~~  341 (696)
                      ....++++.+.|+|+..++...+    +.-.+|.+..++.
T Consensus       101 ~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~  140 (295)
T d2ghsa1         101 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV  140 (295)
T ss_dssp             TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE
T ss_pred             CcccceeeEECCCCCEEEEeccccccccceeEeeecCCcE
Confidence            22358899999999977765432    2334555555543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.30  E-value=1.1  Score=43.51  Aligned_cols=72  Identities=10%  Similarity=0.082  Sum_probs=48.3

Q ss_pred             EEEcCCCcEEEEEecCC-----------eEEEEEccCCCce--eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459          262 ASIAPEQQILAVGTRRG-----------VVELYDLAESASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS  328 (696)
Q Consensus       262 v~~sp~~~~la~g~~dg-----------~v~vw~~~~~~~~--~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D  328 (696)
                      .....++++++.|+.+.           .+.+||..+ ...  ......       .|.......++.+||+.++.|+.+
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t-~~w~~~~~~~~-------~~~~~~~~~~~~~~g~i~v~Gg~~   96 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPST-GIVSDRTVTVT-------KHDMFCPGISMDGNGQIVVTGGND   96 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTT-CCBCCCEEEEC-------SCCCSSCEEEECTTSCEEEECSSS
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCC-CcEeecCCCCC-------CcccceeEEEEecCCcEEEeecCC
Confidence            44456889999888531           377899886 332  222222       133334567889999999998766


Q ss_pred             -CcEEEEEccCCee
Q 005459          329 -RGLTVWSVSGCRL  341 (696)
Q Consensus       329 -g~v~vW~~~~~~~  341 (696)
                       ..+.+||..+..-
T Consensus        97 ~~~~~~yd~~~~~w  110 (387)
T d1k3ia3          97 AKKTSLYDSSSDSW  110 (387)
T ss_dssp             TTCEEEEEGGGTEE
T ss_pred             CcceeEecCccCcc
Confidence             6899999987653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.36  E-value=4  Score=40.13  Aligned_cols=75  Identities=9%  Similarity=0.210  Sum_probs=48.6

Q ss_pred             EEEEEecCCeEEEEEccCCCceeeEEeecc------CCCCCC------------------------C-CCCe--EEEEEC
Q 005459          270 ILAVGTRRGVVELYDLAESASLIRTVSLYD------WGYSMD------------------------D-TGPV--SCIAWT  316 (696)
Q Consensus       270 ~la~g~~dg~v~vw~~~~~~~~~~~~~~~~------~~~~~~------------------------h-~g~V--~~l~~s  316 (696)
                      .+.+|+..|.|+||-+.+ .+.++.+....      |++..+                        + .|-.  -.+++.
T Consensus        15 ~f~SgG~sG~v~v~G~PS-mR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~T   93 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPS-MRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT   93 (459)
T ss_dssp             EEECCBTTCEEEEEEETT-CCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEE
T ss_pred             EEeeCCccceEEEEecCC-cceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCccccc
Confidence            366788999999999987 66655554321      222110                        0 0111  256665


Q ss_pred             C---CCCeEEEEE-cCCcEEEEEccCCeeEEEe
Q 005459          317 P---DNSAFAVGW-KSRGLTVWSVSGCRLMSTI  345 (696)
Q Consensus       317 p---dg~~lasg~-~Dg~v~vW~~~~~~~~~~l  345 (696)
                      -   ||++|++.. .+..|.+-|+...++...+
T Consensus        94 dGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi  126 (459)
T d1fwxa2          94 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAIL  126 (459)
T ss_dssp             TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCccceeEEEEEcCCCceEEEEECcceeeeEEE
Confidence            4   999998876 4678999999988875543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=91.46  E-value=0.75  Score=45.53  Aligned_cols=92  Identities=7%  Similarity=-0.003  Sum_probs=52.4

Q ss_pred             EeCCcEEEEeec-cCCceeeeeeeccee----cCCCCeEE-EEE--cCCCcEEEEEecCC------------------eE
Q 005459          227 YSNGQLMSCSVS-KKGLKLAEFIKIDKE----LGSGDAVC-ASI--APEQQILAVGTRRG------------------VV  280 (696)
Q Consensus       227 s~dG~~~~~~~~-d~~~~~~~~~~~~~~----~~~~~~v~-v~~--sp~~~~la~g~~dg------------------~v  280 (696)
                      ..|||.+++... +..+-..|+...+..    ........ ++.  .|+-.+++.++++.                  .+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence            468988887653 334444444332221    11122233 444  45667777777633                  24


Q ss_pred             EEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459          281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS  328 (696)
Q Consensus       281 ~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D  328 (696)
                      .+.|.++ .+....+..         .+....++++|||+++++.+.+
T Consensus       176 t~ID~~t-m~V~~QV~V---------~g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         176 TAVDADK-WEVAWQVLV---------SGNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             EEEETTT-TEEEEEEEE---------SSCCCCEEECSSSSEEEEEESC
T ss_pred             EEEecCC-ceEEEEeee---------CCChhccccCCCCCEEEEEecc
Confidence            5666665 444444443         3446679999999999998754

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.41  E-value=7.4  Score=38.37  Aligned_cols=53  Identities=15%  Similarity=0.131  Sum_probs=34.6

Q ss_pred             EEEEeCCcEEEEE-c---c--CeEEEeecCCceeeEE-EeecChHHHhhcccccEEEEcCCCcEEEEEe
Q 005459           25 IYFKVNNGLLLIA-S---P--CHIELWSSSQHKVRLG-KYKRDSESVQREGENLQAVWSPDTKLIAVVT   86 (696)
Q Consensus        25 v~fs~dg~lla~~-~---~--~~v~iW~~~~~~~~l~-~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t   86 (696)
                      ..+||||+++|.+ +   +  -+|++.|+. .+..+. .+..        .....++|++|++.|.-..
T Consensus       130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~-tg~~~~~~i~~--------~~~~~~~W~~D~~~~~Y~~  189 (430)
T d1qfma1         130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVD-GAKELPDVLER--------VKFSCMAWTHDGKGMFYNA  189 (430)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETT-TTEEEEEEEEE--------ECSCCEEECTTSSEEEEEE
T ss_pred             eEecCCCCEEEEEeccccCchheeEEeccC-cceeccccccc--------ccccceEEcCCCCEEEEEE
Confidence            4689999998865 2   1  279999996 544332 1111        1124689999999887654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.04  E-value=8.9  Score=35.62  Aligned_cols=66  Identities=9%  Similarity=0.162  Sum_probs=44.9

Q ss_pred             CCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEe---cC----cEEEEEEEE
Q 005459           30 NNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT---SS----LYLHIFKVQ   97 (696)
Q Consensus        30 dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t---~d----g~l~l~~l~   97 (696)
                      +.+.|+.++++.|+=|+...+..+..-+.|+.. |. .-.+..-.-++|.+++++.+   .+    |.+.||.++
T Consensus       112 s~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~-L~-~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e  184 (327)
T d1utca2         112 SLNTVALVTDNAVYHWSMEGESQPVKMFDRHSS-LA-GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD  184 (327)
T ss_dssp             SSSEEEEECSSEEEEEESSSSCCCEEEEECCGG-GT-TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred             CCCEEEEEcCCceEEEcccCCCCchhhhhhccc-cc-CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec
Confidence            356889999999999998645556667777763 42 23455566789999877743   22    556667664