Citrus Sinensis ID: 005463

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-----

MFQANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGETRQSSGSCPGYPYFLTVLQAS

cccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccEEEcccEEEEEEEEEccccccEEEEEEEEEEEEEEccccccccccccccccccHHHcccccccccccccccEEEEEEEEEEEcccccEEEEEEEEEcEEEEEEEEEEEEEEcccEEEEEEEEccccEEccccccccccccccccEEEEEEcccccEEEEEEcccccEEcccEEEEEEEEEEccccccccEEEEEccccEEEEcccccccccccHHHccccccccccccccccccccEEEEccccccccccccEEEEEEEEEccccEEEEEEEEEEEEcccccccEEEEEEEEEEEEEEEcEEEEEEEEEcccccccEEEEEEEEEccccccEEEEEEEEEEccEEEEEEccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccEEEEEccccccccccccccccccccccccccccccccEEEEEccccEEEEccccccccccEEEEEEccccccEEEEEEcccccccccccccccccEEEcccccccccEEEcEEEccccccccccccccccccccccccEEEEEcccEEEEEccccEEEEEEEEEEEEccEEEccccEEEEEEEEcccccccccccccccccccccEEEEEEEcc

cccccccHHHHHHHHHHHHHHHccccccccccccHHcccccccccEEEEccEEEEEEEEEccccEEEEEccEEEEEEEEcccccccccccccccccccccccccEEEcccccccccEEEEEEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEEEcccEccEEEEcccccccccccccccccccccccEEEEEcccccEEEEEEEcccHHHccccEEEEEEEEEEccccccccEEEEEccccEEEEcccccccccccHHHHcccccccccccccccccccEEEccccccccccccEEEEEEEEEccccccEEEEEEEEEEccccccccEEEEEEEEEEEEEEccEEEEEEEEEcccccccEEEEEEEEEccccccEEEEEEEEEcccEEEEccccccccccccccccccEEEEEEEEcccccccccccccccccHccccccEccccccHHHHHcccHHHcHHHHHHHHccccccccccEEEEEEEEEEcccccccccccccHHHHHHHHHHccccccccccccccccHcHHHHHccccccccEcccccHHHHHHHEEEcccccccccccccEEEEEEEEEcccccccEEEEEEEEcccccccccccccccccccccccEEEEEcEEEEEEEccccEEEEEEEEEEEcccEEEcccEEEEEEEcccccccccccccccccccccccEEEEEEEcc

MFQANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEesnicvagepvkvdiefknplqipisisnISLICElstrsdemesdsnssttelqndEESKLLTttgemnsdtssfTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAkgrrkvksspsndlKFIVIKSlpkleglihplperayaGDLRHLVLELKnqsdfsvknlkmkvshprflsignrddmtkEFPACLQKMTNaeqsvaggnfnkmpqavfsfpegisiqgetpllwplwyraavpgkisLSITIYYEMGDVSSVIKYRLLRMHYnlevlpslnvsfqispwsSRLQQYLVRMDVVnqtssenfqihqlssvghqweisllqpfdsifpseslfagqALSCFFMLknrgesstssddtsspsrllgsdvslqgtadtlfdisgspladfhAHERLLQRvsqddtntvdfifisqpsksdsdsgisdpqhlfshhachcsilgktpitwlvdgprtlhhnfnasfceVNLKMTIYNSSDAAMFVRVntfdspsssgqtseatsprsavpsgnqagwhdvpvltdikvtsqlplnqvkrssllesvspfiwsgssassvrlqpmsttdiamkvclfspgtydlsnyALNWKLLTisgqgnegetrqssgscpgypyFLTVLQAS

MFQANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNplqipisisnISLICELSTRSdemesdsnssttelqndeESKLLTTtgemnsdtsSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGvynfesnlvkkkiakgrrkvksspsndlkfiVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQsdfsvknlkmkvshprflsignrdDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESstssddtsspsrlLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLEsvspfiwsgssassVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGetrqssgscpgypYFLTVLQAS

MFQANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLvkkkiakgrrkvkSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGEsstssddtsspsRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGETRQSSGSCPGYPYFLTVLQAS

************************ARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICEL****************************************TLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIA************DLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGN*******FPACLQ**********GGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFML******************************DTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFI****************HLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNT**************************GWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSG**********MSTTDIAMKVCLFSPGTYDLSNYALNWKLLTIS***************PGYPYFLTVL***

*****VRESLWRSLEEDMIP***************************VAGEPVKVDIEFKNPLQIPISISNISLICELSTRSD****************************NSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFE********************NDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDM******************************FSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDV**VIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLL************FAGQALSCFFM***********************DVS*************SPLA*FH***************TVDFIFISQPSK************LFSHHACHCSILGKTPITWLVDGP*****************MTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLT************************FIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNW**********************GYPYFLTVLQA*

MFQANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELS**********************SKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKI************NDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNR***************LLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQ***********DPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTF**********************NQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQ***********SCPGYPYFLTVLQAS

****NVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRS********************KLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVK*********VKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPAC*QKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRG********TSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTS***********LLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTI***************CPGYPYFLTVLQA*

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		695	2.2.26 [Sep-21-2011]
Q9Y2L5		1435	Trafficking protein parti	yes	no	0.866	0.419	0.221	2e-08

>sp\|Q9Y2L5\|TPPC8_HUMAN Trafficking protein particle complex subunit 8 OS=Homo sapiens GN=TRAPPC8 PE=1 SV=2	Back alignment and function desciption

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 163/735 (22%), Positives = 284/735 (38%), Gaps = 133/735 (18%)

Query: 11   WRSLEEDMIPSLSTA--RSNWLELQSKLIMKKFEESN---ICVAGEPVKVDIEFKNPLQI 65
            WR LEE ++  ++     SN+   Q    +  + +++   + V  EP+ V++ F+NPL++
Sbjct: 710  WRELEEQVVSVVNKGVIPSNFHPTQ--YCLNSYSDNSRFPLAVVEEPITVEVAFRNPLKV 767

Query: 66   PISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 125
             + ++++SL+ +   + D    D         N+E  +L+T+  EM     +  +SE  I
Sbjct: 768  LLLLTDLSLLWKFHPK-DFSGKD---------NEEVKQLVTSEPEM---IGAEVISEFLI 814

Query: 126  SLGGAETILVQLMVTPKVEGILKIVGVRWRLS-----------GSLVGVYNFESNL---V 171
            +  G E+ + +L + P   G L I+GV + L            G+L G +  + +L   V
Sbjct: 815  N--GEESKVARLKLFPHHIGELHILGVVYNLGTIQGSMTVDGIGALPGCHTGKYSLSMSV 872

Query: 172  KKK------------IAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRH 219
            + K              + +  VK  P   L  I+ + +P LE      P     G++R 
Sbjct: 873  RGKQDLEIQGPRLNNTKEEKTSVKYGPDRRLDPIITEEMPLLEVFFIHFPTGLLCGEIRK 932

Query: 220  LVLELKNQSDFSVKNLKMKVSHPRFLSIGN-------------------RDDMTKEFPAC 260
              +E  N S   +  LK+    P F + G                    +  +T     C
Sbjct: 933  AYVEFVNVSKCPLTGLKVVSKRPEFFTFGGNTAVLTPLSPSASENCSAYKTVVTDATSVC 992

Query: 261  LQKMTNAEQSVAGGNFNKMPQAV-FSFPEGISIQGETPLLWPLWYRAA-VPGKISLSITI 318
               +++A     G      P+ +    P+ + + G +  L P+W R     G   ++   
Sbjct: 993  TALISSASSVDFGIGTGSQPEVIPVPLPDTVLLPGASVQL-PMWLRGPDEEGVHEINFLF 1051

Query: 319  YYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSS------RLQQYLVRMDVVNQT 372
            YYE       I++R+LR    +    SLNV   +   +S      R    LV +DV N  
Sbjct: 1052 YYESVKKQPKIRHRILRHTAIICTSRSLNVRATVCRSNSLENEEGRGGNMLVFVDVENTN 1111

Query: 373  SSE----NFQIHQLSSVGHQWE----ISLLQPFDSIFPS--ESLFAGQALSCFFMLKNRG 422
            +SE     F I Q+SS    W+    ++L +  D+   S  +  F  +A+ C      + 
Sbjct: 1112 TSEAGVKEFHIVQVSSSSKHWKLQKSVNLSENKDTKLASREKGKFCFKAIRC-----EKE 1166

Query: 423  ESST-SSDDTSSPSRLLGSD---VSLQGTADTLFDISGSPLADFHAH------------- 465
            E++T SS+  +    + G++    S    AD  +    S L    AH             
Sbjct: 1167 EAATQSSEKYTFADIIFGNEQIISSASPCADFFYRSLSSELKKPQAHLPVHTEKQSTEDA 1226

Query: 466  ERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITW--LV 523
             RL+Q+ S+ D N V  I        DS   I + Q    HH      +GK   ++    
Sbjct: 1227 VRLIQKCSEVDLNIV--ILWKAYVVEDSKQLILEGQ----HHVI-LRTIGKEAFSYPQKQ 1279

Query: 524  DGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSG----QTSEATSPRSA 579
            + P      F   F   N+ ++   S +    +   +   P S      Q S    P + 
Sbjct: 1280 EPPEMELLKF---FRPENITVSSRPSVEQLSSLIKTSLHYPESFNHPFHQKSLCLVPVTL 1336

Query: 580  VPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTD 639
            + S       DV V+ D++  +  P         LE    F W G +   ++L+      
Sbjct: 1337 LLSNCSKA--DVDVIVDLRHKTTSP-------EALEIHGSFTWLGQTQYKLQLKSQEIHS 1387

Query: 640  IAMKVCLFSPGTYDL 654
            + +K C    G Y+L
Sbjct: 1388 LQLKACFVHTGVYNL 1402

May be involved in endoplasmic reticulum to Golgi apparatus trafficking at a very early stage.
Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		695
255566159		1284	conserved hypothetical protein [Ricinus	0.949	0.514	0.636	0.0
296089365		1262	unnamed protein product [Vitis vinifera]	0.972	0.535	0.611	0.0
359481103		1289	PREDICTED: trafficking protein particle	0.972	0.524	0.611	0.0
356503854		1289	PREDICTED: trafficking protein particle	0.979	0.528	0.581	0.0
449437874		1288	PREDICTED: trafficking protein particle	0.985	0.531	0.578	0.0
356572633		1257	PREDICTED: trafficking protein particle	0.979	0.541	0.577	0.0
356572631		1254	PREDICTED: trafficking protein particle	0.979	0.543	0.577	0.0
356572629		1283	PREDICTED: trafficking protein particle	0.979	0.530	0.577	0.0
297811763		1249	binding protein [Arabidopsis lyrata subs	0.956	0.532	0.544	0.0
334187712		1244	uncharacterized protein [Arabidopsis tha	0.953	0.532	0.537	0.0

>gi\|255566159\|ref\|XP_002524067.1\| conserved hypothetical protein [Ricinus communis] gi\|223536635\|gb\|EEF38277.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  865 bits (2234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/671 (63%), Positives = 524/671 (78%), Gaps = 11/671 (1%)

Query: 4    ANVRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPL 63
            A+VRES+WRSLEEDMIPSLS A+SNWLELQSK++ K F+++NICVAGE +KV IEF+NPL
Sbjct: 601  ASVRESVWRSLEEDMIPSLSAAKSNWLELQSKVVPKSFKDANICVAGEAIKVRIEFQNPL 660

Query: 64   QIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEV 123
            +IPIS+S++SLICELS  SD+M SD+ SS TE QNDEE K L   G++ SD S FTLSE 
Sbjct: 661  KIPISLSSVSLICELSG-SDDMNSDAGSSATEHQNDEECKKL---GDLTSDNSLFTLSEA 716

Query: 124  DISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVK 183
            D +L G E ILV L VTPKVEG LKIVG+RW+LSGS++G YN ESNLVK KI KGRRK K
Sbjct: 717  DFTLEGDEKILVHLTVTPKVEGSLKIVGIRWKLSGSVLGYYNLESNLVKGKITKGRRKAK 776

Query: 184  SSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPR 243
             SP + LKFIVIK+LPKLEG+IH LPE+AYAGDLRHLVLEL+NQS+FSVKNLKMK+S+PR
Sbjct: 777  HSPKSYLKFIVIKNLPKLEGIIHSLPEKAYAGDLRHLVLELRNQSEFSVKNLKMKISNPR 836

Query: 244  FLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLW 303
            F+SIGN +D+  E P CL+K T  EQ     +  K    +F FPE ISI+ E PL WPLW
Sbjct: 837  FMSIGNGEDLNCEIPECLEKKTEFEQISVPADSKKELHDIFVFPEDISIEREKPLSWPLW 896

Query: 304  YRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYL 363
             RAAVPGKISL + +YYEMGD SS+++YR LRM Y+L+VLPSL++SF ISP  SRLQ++L
Sbjct: 897  LRAAVPGKISLYMVVYYEMGDASSIMRYRTLRMQYDLQVLPSLDLSFAISPCPSRLQEFL 956

Query: 364  VRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGE 423
            VRMD+VN+TSSE+FQ++QLS VGHQWEISLLQP D+IFPS+SL AGQA SCFFMLK+R +
Sbjct: 957  VRMDLVNKTSSESFQVNQLSCVGHQWEISLLQPPDAIFPSQSLIAGQAFSCFFMLKSRRK 1016

Query: 424  SSTSSDDTSSPSRLLGSDVSL--QGTADTLFDISGSPLADFHAHERLLQRVS-QDDTNTV 480
            S  + +   S SR  GSDV L  + + +TLFDIS SPLADFH +ERL    S Q+  NTV
Sbjct: 1017 SLGTGEKILSLSRFPGSDVRLTPEDSKNTLFDISSSPLADFHDYERLQHETSNQESVNTV 1076

Query: 481  DFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEV 540
            D I IS+P KSD+ +GIS+P HLFSHHACHCS    +PI+W+VDGPR   H F+ASFCEV
Sbjct: 1077 DLILISRPLKSDNATGISNPPHLFSHHACHCSTASTSPISWIVDGPRFRRHKFSASFCEV 1136

Query: 541  NLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVT 600
            NL+M +YNSSDA   V +NT DS S +GQ S+A    SAV S NQ GWH + +  DIK+ 
Sbjct: 1137 NLRMLVYNSSDAVASVAINTLDSTSGNGQLSDA----SAVTSRNQTGWHHLSLENDIKII 1192

Query: 601  SQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALN 660
            S +P   V R    ESVSPFIWSGSS++ ++L+P+S+T+I +++C+FSPGTYDLSNY LN
Sbjct: 1193 SDVPETNVARLQSPESVSPFIWSGSSSTRIQLEPLSSTEIPLQICVFSPGTYDLSNYVLN 1252

Query: 661  WKLLTISGQGN 671
            W L  ++ +GN
Sbjct: 1253 WNLQPVNNEGN 1263

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296089365\|emb\|CBI39137.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359481103\|ref\|XP_002263641.2\| PREDICTED: trafficking protein particle complex subunit 8-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356503854\|ref\|XP_003520717.1\| PREDICTED: trafficking protein particle complex subunit 8-like [Glycine max]	Back alignment and taxonomy information

>gi\|449437874\|ref\|XP_004136715.1\| PREDICTED: trafficking protein particle complex subunit 8-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356572633\|ref\|XP_003554472.1\| PREDICTED: trafficking protein particle complex subunit 8-like isoform 3 [Glycine max]	Back alignment and taxonomy information

>gi\|356572631\|ref\|XP_003554471.1\| PREDICTED: trafficking protein particle complex subunit 8-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|356572629\|ref\|XP_003554470.1\| PREDICTED: trafficking protein particle complex subunit 8-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|297811763\|ref\|XP_002873765.1\| binding protein [Arabidopsis lyrata subsp. lyrata] gi\|297319602\|gb\|EFH50024.1\| binding protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334187712\|ref\|NP_001190319.1\| uncharacterized protein [Arabidopsis thaliana] gi\|332004886\|gb\|AED92269.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		695
FB\|FBgn0260655		1319	l(3)76BDm "lethal (3) 76BDm" [	0.558	0.294	0.235	4.3e-15
UNIPROTKB\|Q9Y2L5		1435	TRAPPC8 "Trafficking protein p	0.336	0.163	0.203	2.2e-08

FB\|FBgn0260655 l(3)76BDm "lethal (3) 76BDm" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 229 (85.7 bits), Expect = 4.3e-15, P = 4.3e-15
 Identities = 99/420 (23%), Positives = 188/420 (44%)

Query:     8 ESLWRSLEEDMIPSLSTARSN--WLELQSKLIMKKFE---ESNICVAGEPVKVDIEFKNP 62
             E +W  +EE ++    TA +N  ++   S+ +  K +   E+ + V GEP+++ +   N 
Sbjct:   710 EPIWNKIEEMLV---ITAANNKPFVFKPSRYLYTKQQPALETPVAVQGEPIELAVTLSNS 766

Query:    63 LQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSE 122
             +Q  I++S I L+ +L+  +DE+ S  N+ T E  +D  +K+        S  +S  L+E
Sbjct:   767 VQCRIALSEIDLLWKLTLDNDEVLS--NACTYEESSDSANKIAVGAAIKTSCMASIKLAE 824

Query:   123 VDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSG------SLVGVYNFESNLXXXXXX 176
                     ET+  +L  TPK+ G L I+GV  R++       SL+G   FE+        
Sbjct:   825 Q-----AEETLHFKL--TPKLTGRLSILGVVCRVAAGADPAASLLGTLQFETQKIRPHNA 877

Query:   177 XXXXXXXSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLK 236
                        N L   ++  LP +     P+P R  AG++  + + L+N     ++ + 
Sbjct:   878 KQSSQTVMD--NRLTIKLVPQLPAMNVSFTPVPNRLLAGEIVPVHVTLRNMGIAPIEEIY 935

Query:   237 MKVSHPRFLSI-GNRDDMTKEFPACLQKMTNAEQSVAGGNFN-KMPQAVFSFPEGISIQG 294
             +   +PR +S+      M     + L+ ++N ++ V       +    + + P   ++  
Sbjct:   936 LGCDNPRCVSLLDQHSQMPLAMMSSLRNLSN-DKLVKDKEIRGQRVYRLLNRPGLAALDA 994

Query:   295 ETPLLWPLWYRAA-VPGKISLSITIYYEMGDVS-SVIKYRLLRMHYNLEVLPSLNVSFQI 352
             +      LW +A    G  +L +  YY +  V+ S IKYRL+R  + L+V   L      
Sbjct:   995 QQVQTISLWVQAPHQAGPFTLRLLFYYSLPTVANSPIKYRLVRHIWQLQVESCLQADSTC 1054

Query:   353 SPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVG-HQWEISLLQPFDSIFPSESLFAGQA 411
                ++   +  + ++V NQ + E  +++ ++S+  +  E  L      I  S  +  GQA
Sbjct:  1055 VVSNAVTNELGLDVNVRNQHAVEGTEVY-INSISLYSTEFKLNPDRLHIMNSMGVSPGQA 1113

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB\|Q9Y2L5 TRAPPC8 "Trafficking protein particle complex subunit 8" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00003523001	SubName- Full=Chromosome undetermined scaffold_145, whole genome shotgun sequence; (691 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		695
pfam08626		1183	pfam08626, TRAPPC9-Trs120, Transport protein Trs12	3e-04

>gnl\|CDD\|219942 pfam08626, TRAPPC9-Trs120, Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit	Back alignment and domain information

 Score = 44.0 bits (103), Expect = 3e-04
 Identities = 50/305 (16%), Positives = 99/305 (32%), Gaps = 37/305 (12%)

Query: 48  VAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTT 107
           V G+ V+V +  +NP    + + +I L+ E        E  S  ++  L+     + +T 
Sbjct: 648 VVGDVVEVSVTLQNPFSFEVEVEDIHLVTEGV------EFRSIPASLFLKAPTSMEPVTL 701

Query: 108 TGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFE 167
           +G   S     T++  D+ + G ET  + ++        LK++                 
Sbjct: 702 SGLPLS-VGELTINGFDVKVFGVETQFLFIIDPELKHVALKVL----------------- 743

Query: 168 SNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERA---YAGDLRHLVLEL 224
                   ++  + V++  S  L   VI   P+L  L+  +   +     G+ R   + L
Sbjct: 744 -LESVNAESRLDKTVQNLESESLTVEVIPPQPRLSLLVISMTNGSIMLLEGEKRQFTITL 802

Query: 225 KNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVF 284
           +N S   +  L +           N + + K      + +T  +          +     
Sbjct: 803 ENASSVPINYLSVT------FWDSNIEHLNK--ALHSKLLTADDLYELEFLLLWLKPFRI 854

Query: 285 SFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEM-GDVSSVIKYRLLRMHYNLEVL 343
                I           L             I + Y       S    R L +  N+ V+
Sbjct: 855 LNKPPIQPGEVVTFDIELDGARPPLHMKESGIILEYGHSEPDHSEFYMRRLSIPLNVSVM 914

Query: 344 PSLNV 348
           PS+ +
Sbjct: 915 PSIEL 919

This region is found at the N terminal of Saccharomyces cerevisiae Trs120 protein. Trs120 is a subunit of the multiprotein complex TRAPP (transport particle protein) which functions in ER to Golgi traffic. Trs120 is specific to the larger TRAPP complex, TRAPP II, along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way. It is likely that there is a complex function for TRAPP II in multiple pathways. Length = 1183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		695
KOG1938		960	consensus Protein with predicted involvement in me	100.0
PF08626		1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	99.96
KOG1953		1235	consensus Targeting complex (TRAPP) subunit [Intra	99.62
PF07919		554	Gryzun: Gryzun, putative trafficking through Golgi	99.14
PF06159		249	DUF974: Protein of unknown function (DUF974); Inte	97.66
COG1470		513	Predicted membrane protein [Function unknown]	97.41
PF00927		107	Transglut_C: Transglutaminase family, C-terminal i	95.82
PF10633		78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	95.49
PF07705		101	CARDB: CARDB; InterPro: IPR011635 The APHP (acidic	95.44
PF14874		102	PapD-like: Flagellar-associated PapD-like	94.95
KOG2625		348	consensus Uncharacterized conserved protein [Funct	94.56
PF01345		76	DUF11: Domain of unknown function DUF11; InterPro:	86.15
PF05753		181	TRAP_beta: Translocon-associated protein beta (TRA	85.99
PF00635		109	Motile_Sperm: MSP (Major sperm protein) domain; In	85.55

>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=1.6e-42  Score=395.97  Aligned_cols=491  Identities=20%  Similarity=0.218  Sum_probs=339.1

Q ss_pred             cHHHHHHHHHhhcccccccCCcchhcchhhh-cccccccceeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCcc
Q 005463            7 RESLWRSLEEDMIPSLSTARSNWLELQSKLI-MKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEM   85 (695)
Q Consensus         7 ~e~~W~~LEE~lv~~~~~g~~~~~~~~~~~l-~~~~~~~~~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~   85 (695)
                      .+++|..||++.+..++.|..+|++.+..+. +.+..+.+++|+||++++.|+++|||++++.+++++|+|+|..++...
T Consensus       452 sd~~w~~lEr~~s~~~~~~~~p~~~~ql~~~~~~~~~~~~v~v~Ge~~~l~v~~rnpl~~~~alT~~~ll~kl~~~~~s~  531 (960)
T KOG1938|consen  452 SDNIWPSLERKSSHILFAGSQPFRPSQLLLAEFSDKFKNPVPVAGEPIKLSVTLRNPLKISIALTNSSLLWKLHLDNLSG  531 (960)
T ss_pred             ccccchhHHHHHHHHHhcccCCCcchhcccchhccccccccccCCcceeeEEeecCccceeccccchhhhhhcccccccc
Confidence            5569999999999989989888877776654 345558999999999999999999999999999999999999854433


Q ss_pred             ccCCCCCcccccccccccccccccccCCCCCceeeeeeeEEEcCCceEEEEEEEEeCceEEEEEEEEEEEE------cee
Q 005463           86 ESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRL------SGS  159 (695)
Q Consensus        86 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~L~p~Etk~V~L~v~P~~~G~L~I~Gv~~~L------~~~  159 (695)
                      .+|++.. ..       ..|+.+.        . ....++.+.+.|+.++.|+.+|+..|.|+|.|..|..      .+.
T Consensus       532 ~~Na~s~-~~-------~~Pe~~~--------~-s~~~~~~~~~~e~~t~~L~dfp~~~g~lkii~~v~~~~~~~vd~as  594 (960)
T KOG1938|consen  532 SSNAYSH-SQ-------SSPELID--------D-SAFPELLKSGEEDFTFMLRDFPRAIGILKIIRNVVNPLIEDVDAAS  594 (960)
T ss_pred             ccccccc-cc-------cChhhhh--------h-hhHHHHHhcchhceeeeeeeccccceEEeeeeccccchhcccchhh
Confidence            3333210 10       1121110        0 1236889999999999999999999999999999999      568


Q ss_pred             eeeEEeeeccccccccccc-cccccCCCCCceeEEEecCCCeEEEEEecCCcceecccEEEEEEEEEecccccccceEEE
Q 005463          160 LVGVYNFESNLVKKKIAKG-RRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMK  238 (695)
Q Consensus       160 v~g~~~fe~kg~RL~~tk~-r~~~~y~pd~rL~~~Vi~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~  238 (695)
                      +.|...|+++|+|++.++. ++..+|++|.||.+.+.+.+|+|+++|+++|+.+||||++++.|+++|.|.+|+.+|+++
T Consensus       595 ~yg~~~le~qgirl~~~~~~~~s~~~t~d~RL~~~~~e~lp~levs~~s~P~~lyagq~r~~~le~~nls~~P~~~v~~a  674 (960)
T KOG1938|consen  595 VYGACSLEIQGIRLNNTKLDVTSSKLTNDTRLNILASEMLPLLEVSFTSFPQWLYAGQAREVLLELRNLSPCPAISVDLA  674 (960)
T ss_pred             hhcccchhhhhcchhhhcccccccccChHHHHHHHHHhhhhhhheeeecCcchHHHHHHHHHHHHhhhcCCCchhhHHHH
Confidence            9999999999999999996 458899999999998899999999999999999999999999999999999999999999


Q ss_pred             ecCCceEEeccCCCCCccchhhhhccccccccccCCCCCCCCCceeecCCCcccCCCCeEEEEEEEEeCCCceEEEEEEE
Q 005463          239 VSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITI  318 (695)
Q Consensus       239 ~s~p~~~~~g~~~~~~~~~p~~l~~~~~~e~~~~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~G~~~l~~Lf  318 (695)
                      +++|+| ..  .+.   .++.+..... .++..   -...+-...+.++++..|.+|+++++++|+|++..+.     - 
T Consensus       675 ~s~~~~-~~--l~n---~s~~~~~~~~-a~i~~---~~t~r~~~~s~~~~d~~l~g~r~rr~alW~r~~a~~~-----~-  738 (960)
T KOG1938|consen  675 ASWPYF-AV--LEN---ESHRKGKMNA-ANISQ---QETTRFESGSGSDEDIVLDGGRRRRAALWFRLSAEAS-----K-  738 (960)
T ss_pred             hcChhh-hh--ccc---ccccccccCH-hhhhh---hhhhhhccccCCCcccccCCCceeeeeeeEecccccc-----c-
Confidence            999977 11  010   1112221110 01100   0111111223345678999999999999999985440     1 


Q ss_pred             EeeeCCCCccceEEEEEEEEEEEEeceeEEEEEEeecccccceEEEEEEEEeCCCCCcEEEEEEEeeecceEEeeeCCCc
Q 005463          319 YYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFD  398 (695)
Q Consensus       319 yYe~~~~~~~~~~R~vR~~~~v~V~pSL~vs~~~~~s~s~~~~~~l~v~V~N~~~~~~~~l~Qvs~vS~~W~i~~l~~~~  398 (695)
                                ..+|                   +.+++.       .+...|.....-.++++++.....|.....+.-.
T Consensus       739 ----------~w~r-------------------~~~~r~-------~~~~~n~a~~~y~~i~~~~~s~~~l~~~~~~~e~  782 (960)
T KOG1938|consen  739 ----------PWLR-------------------QRQWRR-------ASWCLNTAKSTYSKIHWLSLSECILSKSLNLSEN  782 (960)
T ss_pred             ----------chHH-------------------hhhhhh-------hhhhhhccccceeeeeeeehhhhhhhhhccchhh
Confidence                      1122                   111111       3344444444557778888887778888777666


Q ss_pred             ccCCCcccCccceeeEEEEEeecCCCCCCCCCCCCCCcccccceeecCCCCccccccCCcchhhhhhhhhcc---cc-cc
Q 005463          399 SIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQ---RV-SQ  474 (695)
Q Consensus       399 si~~~~~l~~~q~~~~~f~~~~~~~~~~~~~~~~s~~~~~~sdv~l~~~~~~~~~~s~~P~~df~~~~r~~~---~~-~~  474 (695)
                      ...++.....++.++++++...++..+.+++..      ..       +  .++..+..++++|+......-   .. .+
T Consensus       783 ~dvpsa~~~~~~~ls~~~~~~~~~~~~~e~e~~------i~-------~--~~~~~s~~~~~~~~~~~st~~~~~~~~~~  847 (960)
T KOG1938|consen  783 TDVPSAFTPSGKNLSRTSVSFIGRAVEIESEQP------IV-------A--RLVPLSQGETIKFFWLTSTTEVTPPAEIQ  847 (960)
T ss_pred             ccCccccCccccccceeeeccccccccccccCC------cc-------c--ceeeccCCcchhhhhhccccccCCChhhc
Confidence            666677777899999999888888777554442      11       2  244556666777775421110   00 11


Q ss_pred             CCCCceeEEEEecccccCCCCCCCCCccccceeecccc--ccCCCc--eEEEE-eCCCeeeccCCC-CceeEeEEEEEEe
Q 005463          475 DDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCS--ILGKTP--ITWLV-DGPRTLHHNFNA-SFCEVNLKMTIYN  548 (695)
Q Consensus       475 ~~~~~l~liv~W~a~~~~~~~~~~~~~~~Gq~h~~~~~--~~~~~p--i~~~l-~~p~~i~HdFs~-~~C~vpv~l~l~N  548 (695)
                      ..++  +|+++|+|++++|++.  . ..+| +.+-+.-  ....++  .+.++ .-...|.|  ++ .+|++|+++.++|
T Consensus       848 ~~~~--~i~~~w~a~vv~~eg~--~-~~~g-~~~~l~~~f~~~~~~~~~~~s~~~~~~~i~~--t~~~~~~~p~t~~~~n  919 (960)
T KOG1938|consen  848 STMD--TIVILWKANVVNDEGV--T-RFIG-PFVKLKKLFKTDSCLSSLRISCETTSKEISH--TADHLCELPITLLISN  919 (960)
T ss_pred             cChh--hHHHhcccccccccce--e-eecC-CcceehhhccCCcccccchhhhhhhhhhcch--hhhhhhcccchhhhcC
Confidence            2333  3889999999999742  2 4455 2221110  001122  22222 22344555  44 6666666666666


Q ss_pred             cCCceEEEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccceecccCCcccccccccccccCceEEeccccc
Q 005463          549 SSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSAS  628 (695)
Q Consensus       549 ~s~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~g~~~~  628 (695)
                      |+.+...|.+.+.                                   -+                      .|.|+++|
T Consensus       920 ~~~~~~~v~~~~~-----------------------------------~~----------------------~w~~~~~~  942 (960)
T KOG1938|consen  920 NDLAWRPVSVSIE-----------------------------------ES----------------------SWIGRPVY  942 (960)
T ss_pred             Ccccccccchhhh-----------------------------------hh----------------------cccCCcce
Confidence            6665555554421                                   10                      19999999


Q ss_pred             eEEeCCCceeEEEeEEEE
Q 005463          629 SVRLQPMSTTDIAMKVCL  646 (695)
Q Consensus       629 ~~~l~p~~~~~i~l~~~~  646 (695)
                      |.|+++++.+.++|+|||
T Consensus       943 k~q~~~~~~~~~~m~~~~  960 (960)
T KOG1938|consen  943 KQQIGILEEASLEMKWKI  960 (960)
T ss_pred             eeeecccccceeeeEecC
Confidence            999999999999999986

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway	Back alignment and domain information

>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function	Back alignment and domain information

>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins	Back alignment and domain information

>COG1470 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds	Back alignment and domain information

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known	Back alignment and domain information

>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins	Back alignment and domain information

>PF14874 PapD-like: Flagellar-associated PapD-like	Back alignment and domain information

>KOG2625 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes	Back alignment and domain information

>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins	Back alignment and domain information

>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		695
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 51.8 bits (123), Expect = 7e-07
 Identities = 73/536 (13%), Positives = 170/536 (31%), Gaps = 134/536 (25%)

Query: 7   RESLWRSLEEDMIPSLSTAR-SNWLELQSKLI------------MKKFEESNICVAGEPV 53
           R+ L+   +  +    + +R   +L+L+  L+            +    ++   VA +  
Sbjct: 116 RDRLYNDNQ--VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT--WVALDVC 171

Query: 54  K-VDIEFKNPLQIP-ISISN-------ISLICELSTRSDEM---ESDSNSSTTELQNDEE 101
               ++ K   +I  +++ N       + ++ +L  + D      SD +S+     +  +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 102 SKLLTTTGEMNSDTSSFTLSEV-DISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSL 160
           ++L         +     L  V +     A  +  ++++T + + +   +        SL
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 161 VGVYNFESNLVKKKIAKGRRKVKSSPSNDL--KFIVIK--SLPKLEGLIHPLPERAYAGD 216
               +    L   +               L  K++  +   LP+     +P      A  
Sbjct: 292 D---HHSMTLTPDE------------VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 217 LRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNF 276
           +R    +     D        K++     S+   +      PA  +KM           F
Sbjct: 337 IR----DGLATWDNWKHVNCDKLTTIIESSLNVLE------PAEYRKM-----------F 375

Query: 277 NKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGD-VSSVIKYRLLR 335
           +++  +V  FP    I   T LL  +W+             I  ++   V+ + KY L+ 
Sbjct: 376 DRL--SV--FPPSAHI--PTILLSLIWFD-----------VIKSDVMVVVNKLHKYSLVE 418

Query: 336 MHYNLEV--LPSLNVSFQISPWSSRLQQYLVRMDVVNQ-TSSENFQIHQLSS-------- 384
                    +PS+ +  ++        +Y +   +V+     + F    L          
Sbjct: 419 KQPKESTISIPSIYLELKV----KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 385 --VG-HQWEISLLQPFDSIFPSESLFAGQALSCFFM---LKNRGESSTSSDDTSSPSRLL 438
             +G H   I   +    +F    +F    L   F+   +++     T+ + + S    L
Sbjct: 475 SHIGHHLKNIEHPERMT-LFR--MVF----LDFRFLEQKIRHDS---TAWNASGSILNTL 524

Query: 439 GSDVSLQGT----ADTLFDISGSPLADF----------HAHERLLQRVSQDDTNTV 480
              +          D  ++   + + DF            +  LL+     +   +
Sbjct: 525 -QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		695
2qsv_A		220	Uncharacterized protein; MCSG, structural genomics	95.78
2xzz_A		102	Protein-glutamine gamma-glutamyltransferase K; 2.3	94.19
3idu_A		127	Uncharacterized protein; all beta-protein, structu	93.48
1vjj_A		692	Protein-glutamine glutamyltransferase E; transglut	93.42
1g0d_A		695	Protein-glutamine gamma-glutamyltransferase; tissu	92.21
2q3z_A		687	Transglutaminase 2; transglutaminase 2, tissue tra	92.11
1g0d_A		695	Protein-glutamine gamma-glutamyltransferase; tissu	92.0
1ex0_A		731	Coagulation factor XIII A chain; transglutaminase,	90.75
1ex0_A		731	Coagulation factor XIII A chain; transglutaminase,	90.67
2q3z_A		687	Transglutaminase 2; transglutaminase 2, tissue tra	89.61
1vjj_A		692	Protein-glutamine glutamyltransferase E; transglut	88.24
1row_A		109	SSP-19, MSP-domain protein like family member; bet	87.26
2l0d_A		114	Cell surface protein; structural genomics, northea	85.89
1m1s_A		116	WR4; structural genomics, major sperm protein, bio	85.24
3isy_A		120	Bsupi, intracellular proteinase inhibitor; intrace	84.17
2e6j_A		112	Hydin protein; PAPD, structural genomics, NPPSFA,	82.86

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}	Back alignment and structure

Probab=95.78  E-value=0.45  Score=47.23  Aligned_cols=176  Identities=14%  Similarity=0.131  Sum_probs=107.9

Q ss_pred             cccceeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeee
Q 005463           42 EESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLS  121 (695)
Q Consensus        42 ~~~~~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  121 (695)
                      -+.....+|++....+.++|.=+-||.++.++|     +. . .                                 .+.
T Consensus        10 idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-----p~-~-~---------------------------------~~~   49 (220)
T 2qsv_A           10 LLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-----PS-F-V---------------------------------SLD   49 (220)
T ss_dssp             EECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-----CT-T-E---------------------------------ECS
T ss_pred             eEcccccCCCcceEEEEEEeCCCCceEEEeccC-----CC-c-e---------------------------------Eee
Confidence            367788899999999999999999999998764     11 0 0                                 111


Q ss_pred             eeeEEEcCCceEEEEEEEEeCce---EEEEEEEEEEEEc----eeeeeEEeeeccccccccccccccccCCCCCceeEEE
Q 005463          122 EVDISLGGAETILVQLMVTPKVE---GILKIVGVRWRLS----GSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIV  194 (695)
Q Consensus       122 ~~~i~L~p~Etk~V~L~v~P~~~---G~L~I~Gv~~~L~----~~v~g~~~fe~kg~RL~~tk~r~~~~y~pd~rL~~~V  194 (695)
                      ...-.|.|+++-.|.++.-+..-   |..+=. +.....    +... ...+.                      ++..+
T Consensus        50 ~~~~~I~PG~~g~I~vt~~~~~~~~~G~~~~~-i~v~~~~~~~~~~~-~~~i~----------------------v~g~v  105 (220)
T 2qsv_A           50 DRAFRLQAREPRELNLSLAVPRNMPPGMKDEP-LVLEVTSPETGKKA-VDSVM----------------------VSLPL  105 (220)
T ss_dssp             CCEEEECSSSCEEEEEEECCCTTCCSEEEEEE-EEEEEECTTTCCEE-EEEEE----------------------EEEEE
T ss_pred             eCcceeCCCCceEEEEEEcchhcccCCceeeE-EEEEEEcCCCCccc-ccEEE----------------------EEEEE
Confidence            24677899999999988887764   432210 111111    1100 00111                      11222


Q ss_pred             ec--------CCCeEEEEEecCCcceecccEEEEEEEEEecccccccceEEEecCCceEEeccCCCCCccchhhhhcccc
Q 005463          195 IK--------SLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTN  266 (695)
Q Consensus       195 i~--------~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~G~~pl~~l~v~~s~p~~~~~g~~~~~~~~~p~~l~~~~~  266 (695)
                      .+        .+|.+++. ..+...-+.|+.....++|+|.|..||.=-.+.++.. ++.                    
T Consensus       106 ~p~~~~~~~~~~~~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~scg-ct~--------------------  163 (220)
T 2qsv_A          106 VDNFPALTAAQTGVMELS-TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRNP-ALT--------------------  163 (220)
T ss_dssp             CCCGGGCCGGGCCCEECC-CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECST-TEE--------------------
T ss_pred             cccchhhhhccCCEEEEE-eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCCC-CEe--------------------
Confidence            22        35555554 3333322228999999999999999987555554333 111                    


Q ss_pred             ccccccCCCCCCCCCceeecCCCcccCCCCeEEEEEEEEeCCC-ce----EEEEEEEEee
Q 005463          267 AEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVP-GK----ISLSITIYYE  321 (695)
Q Consensus       267 ~e~~~~~~~~~~~~~~v~~lp~~~~L~pGes~~~plwlrap~~-G~----~~l~~LfyYe  321 (695)
                                       ..++ ...|+||++.++.+.+.+... |.    ..-.+.+|--
T Consensus       164 -----------------~~~~-~~~i~PGe~~~i~v~~~~~~~~g~~~~~~~~~i~v~~N  205 (220)
T 2qsv_A          164 -----------------AVPD-RTEIKPGGSTLLRIAVDPQVMKAEGWQSIAADISIICN  205 (220)
T ss_dssp             -----------------EEES-CSEECTTCEEEEEEEECHHHHHHTTCSEEEEEEEEEES
T ss_pred             -----------------eecC-CccCCCCCEEEEEEEEecCCCCCcccceeccEEEEEEC
Confidence                             1122 347899999999999988633 76    6666666543

PyMOL of 2qsv

>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}	Back alignment and structure

>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A	Back alignment and structure

>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*	Back alignment and structure

>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4	Back alignment and structure

>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*	Back alignment and structure

>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4	Back alignment and structure

>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A	Back alignment and structure

>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A	Back alignment and structure

>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*	Back alignment and structure

>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*	Back alignment and structure

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2	Back alignment and structure

>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}	Back alignment and structure

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2	Back alignment and structure

>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}	Back alignment and structure

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		695
d1g0da3		101	Transglutaminase, two C-terminal domains {Red sea	96.66
d1ex0a3		100	Transglutaminase, two C-terminal domains {Human (H	96.6
d2q3za3		98	Transglutaminase, two C-terminal domains {Human (H	95.98
d1vjja3		99	Transglutaminase, two C-terminal domains {Human (H	95.88
d1w8oa1		103	Sialidase, "linker" domain {Micromonospora viridif	92.08
d1vjja3		99	Transglutaminase, two C-terminal domains {Human (H	83.68
d1m1sa_		109	WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623	80.07

>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}	Back information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Red sea bream (Chrysophrys major) [TaxId: 143350]

Probab=96.66  E-value=0.0052  Score=52.09  Aligned_cols=68  Identities=21%  Similarity=0.308  Sum_probs=48.3

Q ss_pred             eeEcCceEEEEEEEeCCCcCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeeee-e
Q 005463           46 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEV-D  124 (695)
Q Consensus        46 ~~vvgEpi~V~V~L~NPL~ipl~Ls~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-~  124 (695)
                      .+++|+++.++|+|+|||.++|.=--+++..    .  ..                 ..+              .... .
T Consensus        11 ~~~v~~~~~v~vsf~NPL~~~L~~c~~~vEG----~--GL-----------------~~~--------------~~~~~~   53 (101)
T d1g0da3          11 KAVVWEPLTAYVSFTNPLPVPLKGGVFTLEG----A--GL-----------------LSA--------------TQIHVN   53 (101)
T ss_dssp             CEETTCCEEEEEEEECCSSSCEESCEEEEEE----T--TT-----------------EEE--------------EEEECS
T ss_pred             CcCcCCeEEEEEEEECCCCCeecCEEEEEEc----C--CC-----------------Ccc--------------cEEEec
Confidence            4789999999999999999987643334331    0  00                 000              0011 2


Q ss_pred             EEEcCCceEEEEEEEEeCceEEEEEE
Q 005463          125 ISLGGAETILVQLMVTPKVEGILKIV  150 (695)
Q Consensus       125 i~L~p~Etk~V~L~v~P~~~G~L~I~  150 (695)
                      =.++|+++-++++.++|++.|.=+|.
T Consensus        54 ~~v~p~~~~~~~~~~~P~~~G~~~L~   79 (101)
T d1g0da3          54 GAVAPSGKVSVKLSFSPMRTGVRKLL   79 (101)
T ss_dssp             SEECTTCEEEEEEEECCSSCEEEEEE
T ss_pred             CCcCCCCEEEEEEEEEcCCcccEEEE
Confidence            26899999999999999999987764

PyMOL of d1g0da3

>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}	Back information, alignment and structure

>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}	Back information, alignment and structure

>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}	Back information, alignment and structure

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}	Back information, alignment and structure

>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}	Back information, alignment and structure

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure