Citrus Sinensis ID: 005467
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 695 | 2.2.26 [Sep-21-2011] | |||||||
| Q8RY46 | 700 | ABC transporter B family | yes | no | 0.941 | 0.934 | 0.588 | 0.0 | |
| Q9NP78 | 766 | ATP-binding cassette sub- | yes | no | 0.840 | 0.762 | 0.359 | 7e-95 | |
| Q9JJ59 | 762 | ATP-binding cassette sub- | yes | no | 0.837 | 0.763 | 0.355 | 8e-95 | |
| Q9QYJ4 | 762 | ATP-binding cassette sub- | yes | no | 0.837 | 0.763 | 0.355 | 1e-94 | |
| Q9FNU2 | 641 | ABC transporter B family | no | no | 0.847 | 0.918 | 0.345 | 4e-90 | |
| Q56A55 | 714 | ATP-binding cassette sub- | no | no | 0.703 | 0.684 | 0.396 | 3e-88 | |
| Q54BU4 | 909 | ABC transporter B family | yes | no | 0.817 | 0.624 | 0.346 | 2e-87 | |
| Q54W24 | 767 | ABC transporter B family | no | no | 0.795 | 0.720 | 0.340 | 3e-86 | |
| Q9JI39 | 715 | ATP-binding cassette sub- | no | no | 0.811 | 0.788 | 0.356 | 1e-85 | |
| Q9NRK6 | 738 | ATP-binding cassette sub- | no | no | 0.694 | 0.654 | 0.386 | 2e-85 |
| >sp|Q8RY46|AB26B_ARATH ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana GN=ABCB26 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/656 (58%), Positives = 502/656 (76%), Gaps = 2/656 (0%)
Query: 39 FQIISNNKKFKRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWW 98
Q + N + ++ N A ++ DN+ + + + F+R + PGGSWW
Sbjct: 46 LQSSTRNYRLPSINCSTVNGAVAETAEYYEGEGDNV-SLAEKIRQCIDFLRTILPGGSWW 104
Query: 99 NLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEA 158
+ SD + AKP+TVW ALSRMW L+ D+W++ A ++LIVAA+SEIT+P L +
Sbjct: 105 SFSDEVDGRF-IAKPVTVWRALSRMWELVAEDRWVIFAAFSTLIVAALSEITIPHFLTAS 163
Query: 159 VFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQD 218
+FSAQ + VFH++ + LV LCVTSGI SG+R F IAN++LVKR+RETLYS LLFQD
Sbjct: 164 IFSAQSGDIAVFHRNVKLLVTLCVTSGICSGIRGCFFGIANMILVKRMRETLYSTLLFQD 223
Query: 219 VYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278
+ FFD++ VG LTSRL +DCQ++S VIGND+NMI RN LQG GA I LL LSWPL L L
Sbjct: 224 ISFFDSQTVGDLTSRLGSDCQQVSRVIGNDLNMIFRNVLQGTGALIYLLILSWPLGLCTL 283
Query: 279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKI 338
+IC L+ ++ VYG YQK+ + L QE A AN VAQET +MRTVRVYGTE++E RY
Sbjct: 284 VICCILAAVMFVYGMYQKKTAKLIQEITASANEVAQETYSLMRTVRVYGTEKQEFKRYNH 343
Query: 339 WLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCE 398
WL++LA I +R+S AYG+WN SF TLY +TQ++AVL+GG+SI+ GQ++ EQLTK++LY E
Sbjct: 344 WLQRLADISLRQSAAYGIWNWSFNTLYHATQIIAVLVGGLSILAGQITAEQLTKFLLYSE 403
Query: 399 WLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFH 458
WLIYATW + DNLSSL+QS+GA+EKVFQ++DL PS+QF+S+G +LQRL GH++FV++SF
Sbjct: 404 WLIYATWWVGDNLSSLMQSVGASEKVFQMMDLKPSDQFISKGTRLQRLTGHIEFVDVSFS 463
Query: 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518
YPSR V ++ +V +++ EVVAIVGLSGSGKST VNLLL+LYEP+ GQI +DG PL +
Sbjct: 464 YPSRDEVAVVQNVNISVHPGEVVAIVGLSGSGKSTLVNLLLQLYEPTSGQILLDGVPLKE 523
Query: 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 578
LD++WLR++IG+VGQEP+L + DI SNI YGC +++ EDI AAKQAY H+FI +LP G
Sbjct: 524 LDVKWLRQRIGYVGQEPKLFRTDISSNIKYGCDRNISQEDIISAAKQAYAHDFITALPNG 583
Query: 579 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638
Y T+VDDDLLSGGQKQRIAIARAILRDP IL+LDEATSALD+ESEH VKGVL ++ ND
Sbjct: 584 YNTIVDDDLLSGGQKQRIAIARAILRDPRILILDEATSALDAESEHNVKGVLRSIGNDSA 643
Query: 639 TKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTESL 694
TKR+VIVIAHRLSTI+A DRIV +D GR++E+G+H ELL K LYA+L KRQ +++
Sbjct: 644 TKRSVIVIAHRLSTIQAADRIVAMDSGRVVEMGSHKELLSKDGLYARLTKRQNDAV 699
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9NP78|ABCB9_HUMAN ATP-binding cassette sub-family B member 9 OS=Homo sapiens GN=ABCB9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (893), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 222/618 (35%), Positives = 346/618 (55%), Gaps = 34/618 (5%)
Query: 97 WWNLSD---GQEAENPTA-----------KPITVWIALSRMWNLIGRDKWIVLVAVAS-- 140
WW LS G +A P A +P + + + L+ K V VA+
Sbjct: 134 WWLLSTVRPGTQALEPGAATEAEGFPGSGRPPPEQASGATLQKLLSYTKPDVAFLVAASF 193
Query: 141 -LIVAAVSEITMPRILAEAVFSAQREEAM-VFHKSSRFLVLLCVTSGIFSGLRSGCFSIA 198
LIVAA+ E +P A+ +++M F + + LL + S +G+R G F++
Sbjct: 194 FLIVAALGETFLPYYTGRAIDGIVIQKSMDQFSTAVVIVCLLAIGSSFAAGIRGGIFTLI 253
Query: 199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQ 258
L RLR L+ +L+ Q+ FFD G L SRLT+D +S+++ +IN+ LRN+++
Sbjct: 254 FARLNIRLRNCLFRSLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINVFLRNTVK 313
Query: 259 GAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLC 318
G + + +LSW L+L + + ++ ++YG+Y KR S Q A A+N A+ET+
Sbjct: 314 VTGVVVFMFSLSWQLSLVTFMGFPIIMMVSNIYGKYYKRLSKEVQNALARASNTAEETIS 373
Query: 319 MMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG--LWNMSFITLYRSTQVMAVLLG 376
M+TVR + EE+E Y L+++ + +E+ AY +W L QV + G
Sbjct: 374 AMKTVRSFANEEEEAEVYLRKLQQVYKLNRKEAAAYMYYVWGSGLTLLV--VQVSILYYG 431
Query: 377 GMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNL-SSLLQSIGATEKVFQLIDLLPSNQ 435
G ++ GQ++ L +++Y E+++ V ++ S L+Q +GA EKVF+ ID P+
Sbjct: 432 GHLVISGQMTSGNLIAFIIY-EFVLGDCMESVGSVYSGLMQGVGAAEKVFEFIDRQPT-- 488
Query: 436 FLSEG-VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 494
+ +G + L G V F N++F Y +RP +L +V ++ +V A+VG SGSGKS+
Sbjct: 489 MVHDGSLAPDHLEGRVDFENVTFTYRTRPHTQVLQNVSFSLSPGKVTALVGPSGSGKSSC 548
Query: 495 VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 554
VN+L Y G++ +DG P++ D ++L I V QEP L I NI YG P V
Sbjct: 549 VNILENFYPLEGGRVLLDGKPISAYDHKYLHRVISLVSQEPVLFARSITDNISYGLPT-V 607
Query: 555 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLD 612
E + AA++A H FI+ L GY T + LSGGQKQR+A+ARA++R+P +L+LD
Sbjct: 608 PFEMVVEAAQKANAHGFIMELQDGYSTETGEKGAQLSGGQKQRVAMARALVRNPPVLILD 667
Query: 613 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 672
EATSALD+ESE+ ++ +H K TV++IAHRLST++ IVV+D GR+++ G
Sbjct: 668 EATSALDAESEYLIQQAIHG----NLQKHTVLIIAHRLSTVEHAHLIVVLDKGRVVQQGT 723
Query: 673 HAELLHKGRLYAKLVKRQ 690
H +LL +G LYAKLV+RQ
Sbjct: 724 HQQLLAQGGLYAKLVQRQ 741
|
ATP-dependent low-affinity peptide transporter which translocates a broad spectrum of peptides from the cytosol to the lysosomal lumen. Displays a broad peptide length specificity from 6-mer up to at least 59-mer peptides with an optimum of 23-mers. Favors positively charged, aromatic or hydrophobic residues in the N- and C-terminal positions whereas negatively charged residues as well as asparagine and methionine are not favored. Homo sapiens (taxid: 9606) |
| >sp|Q9JJ59|ABCB9_MOUSE ATP-binding cassette sub-family B member 9 OS=Mus musculus GN=Abcb9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (893), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 215/605 (35%), Positives = 341/605 (56%), Gaps = 23/605 (3%)
Query: 93 PGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMP 152
PG ++ G AE + L ++ + D ++ A LIVAA+ E +P
Sbjct: 149 PGNEGFHGEGGAPAEQASGA------TLQKLLSYTKPDVAFLVAASFFLIVAALGETFLP 202
Query: 153 RILAEAVFSAQREEAM-VFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLY 211
A+ S +++M F + + LL + S + +G+R G F++ L RLR L+
Sbjct: 203 YYTGRAIDSIVIQKSMDQFTTAVVVVCLLAIGSSLAAGIRGGIFTLVFARLNIRLRNCLF 262
Query: 212 SALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW 271
+L+ Q+ FFD G L SRLT+D +S+++ +IN+ LRN+++ G + + +LSW
Sbjct: 263 RSLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINIFLRNTVKVTGVVVFMFSLSW 322
Query: 272 PLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEK 331
L+L + + ++ ++YG+Y KR S Q A A+ A+ET+ M+TVR + EE+
Sbjct: 323 QLSLVTFMGFPIIMMVSNIYGKYYKRLSKEVQSALARASTTAEETISAMKTVRSFANEEE 382
Query: 332 ELGRYKIWLEKLAFIRIRESMAYG--LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQ 389
E + L+++ + +E+ AY +W L QV + GG ++ GQ+S
Sbjct: 383 EAEVFLRKLQQVYKLNRKEAAAYMSYVWGSGLTLLV--VQVSILYYGGHLVISGQMSSGN 440
Query: 390 LTKYVLYCEWLIYATWRMVDNL-SSLLQSIGATEKVFQLIDLLPSNQFLSEG-VKLQRLM 447
L +++Y E+++ V ++ S L+Q +GA EKVF+ ID P+ + +G + L
Sbjct: 441 LIAFIIY-EFVLGDCMESVGSVYSGLMQGVGAAEKVFEFIDRQPT--MVHDGSLAPDHLE 497
Query: 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
G V F N++F Y +RP +L +V ++ +V A+VG SGSGKS+ VN+L Y G
Sbjct: 498 GRVDFENVTFTYRTRPHTQVLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFYPLQGG 557
Query: 508 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAY 567
++ +DG P+ D ++L I V QEP L I NI YG P V E + AA++A
Sbjct: 558 RVLLDGKPIGAYDHKYLHRVISLVSQEPVLFARSITDNISYGLPT-VPFEMVVEAAQKAN 616
Query: 568 VHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 625
H FI+ L GY T + LSGGQKQR+A+ARA++R+P +L+LDEATSALD+ESE+
Sbjct: 617 AHGFIMELQDGYSTETGEKGAQLSGGQKQRVAMARALVRNPPVLILDEATSALDAESEYL 676
Query: 626 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 685
++ +H + TV++IAHRLST++ IVV+D GR+++ G H +LL +G LYAK
Sbjct: 677 IQQAIHG----NLQRHTVLIIAHRLSTVERAHLIVVLDKGRVVQQGTHQQLLAQGGLYAK 732
Query: 686 LVKRQ 690
LV+RQ
Sbjct: 733 LVQRQ 737
|
ATP-dependent low-affinity peptide transporter which translocates a broad spectrum of peptides from the cytosol to the lysosomal lumen. Displays a broad peptide length specificity from 6-mer up to at least 59-mer peptides with an optimum of 23-mers. Favors positively charged, aromatic or hydrophobic residues in the N- and C-terminal positions whereas negatively charged residues as well as asparagine and methionine are not favored. Mus musculus (taxid: 10090) |
| >sp|Q9QYJ4|ABCB9_RAT ATP-binding cassette sub-family B member 9 OS=Rattus norvegicus GN=Abcb9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (892), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 215/605 (35%), Positives = 341/605 (56%), Gaps = 23/605 (3%)
Query: 93 PGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMP 152
PG ++ G AE + L ++ + D ++ A LIVAA+ E +P
Sbjct: 149 PGNEGFHGEGGAPAEQASGA------TLQKLLSYTKPDVAFLVAASFFLIVAALGETFLP 202
Query: 153 RILAEAVFSAQREEAM-VFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLY 211
A+ S +++M F + + LL + S + +G+R G F++ L RLR L+
Sbjct: 203 YYTGRAIDSIVIQKSMDQFTTAVVVVCLLAIGSSLAAGIRGGIFTLVFARLNIRLRNCLF 262
Query: 212 SALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW 271
+L+ Q+ FFD G L SRLT+D +S+++ +IN+ LRN+++ G + + +LSW
Sbjct: 263 RSLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINIFLRNTVKVTGVVVFMFSLSW 322
Query: 272 PLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEK 331
L+L + + ++ ++YG+Y KR S Q A A+ A+ET+ M+TVR + EE+
Sbjct: 323 QLSLVTFMGFPIIMMVSNIYGKYYKRLSKEVQSALARASTTAEETISAMKTVRSFANEEE 382
Query: 332 ELGRYKIWLEKLAFIRIRESMAYG--LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQ 389
E + L+++ + +E+ AY +W L QV + GG ++ GQ+S
Sbjct: 383 EAEVFLRKLQQVYKLNRKEAAAYMSYVWGSGLTLLV--VQVSILYYGGHLVISGQMSSGN 440
Query: 390 LTKYVLYCEWLIYATWRMVDNL-SSLLQSIGATEKVFQLIDLLPSNQFLSEG-VKLQRLM 447
L +++Y E+++ V ++ S L+Q +GA EKVF+ ID P+ + +G + L
Sbjct: 441 LIAFIIY-EFVLGDCMESVGSVYSGLMQGVGAAEKVFEFIDRQPT--MVHDGRLAPDHLE 497
Query: 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
G V F N++F Y +RP +L +V ++ +V A+VG SGSGKS+ VN+L Y G
Sbjct: 498 GRVDFENVTFTYRTRPHTQVLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFYPLQGG 557
Query: 508 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAY 567
++ +DG P+ D ++L I V QEP L I NI YG P V E + AA++A
Sbjct: 558 RVLLDGEPIGAYDHKYLHRVISLVSQEPVLFARSITDNISYGLPT-VPFEMVVEAAQKAN 616
Query: 568 VHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 625
H FI+ L GY T + LSGGQKQR+A+ARA++R+P +L+LDEATSALD+ESE+
Sbjct: 617 AHGFIMELQDGYSTETGEKGAQLSGGQKQRVAMARALVRNPPVLILDEATSALDAESEYL 676
Query: 626 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 685
++ +H + TV++IAHRLST++ IVV+D GR+++ G H +LL +G LYAK
Sbjct: 677 IQQAIHG----NLQRHTVLIIAHRLSTVERAHLIVVLDKGRVVQQGTHQQLLAQGGLYAK 732
Query: 686 LVKRQ 690
LV+RQ
Sbjct: 733 LVQRQ 737
|
ATP-dependent low-affinity peptide transporter which translocates a broad spectrum of peptides from the cytosol to the lysosomal lumen. Displays a broad peptide length specificity from 6-mer up to at least 59-mer peptides with an optimum of 23-mers. Favors positively charged, aromatic or hydrophobic residues in the N- and C-terminal positions whereas negatively charged residues as well as asparagine and methionine are not favored. Rattus norvegicus (taxid: 10116) |
| >sp|Q9FNU2|AB25B_ORYSJ ABC transporter B family member 25 OS=Oryza sativa subsp. japonica GN=OsABCB25 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (853), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 210/608 (34%), Positives = 337/608 (55%), Gaps = 19/608 (3%)
Query: 94 GGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPR 153
G + LSD +E N +P V R+ L D +++A +L+VA++S I +P+
Sbjct: 19 GETSRALSDLEEGSN--VQPENV--GFCRVIKLARHDAGKLVIATMALLVASLSNILVPK 74
Query: 154 ILAEAVFSAQREEAMVFHKSSR---------FLVLLCVTSGIFSGLRSGCFSIANIVLVK 204
+ + R+ K+ ++V++ VT + + LR+ F+ A+ +V
Sbjct: 75 YGGKIIDIVSRDVRRPEDKAQALDDVTGTILYIVIIVVTGSVCTALRAWLFNSASERVVA 134
Query: 205 RLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFI 264
RLR+ L+S L+ Q++ FFD G L SRL+ D Q + N +++ LRN +
Sbjct: 135 RLRKDLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNITTTSIGLG 194
Query: 265 NLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVR 324
+ SW LTL AL+I +SI V +G++ + S TQ A A+++A+E+ +RTVR
Sbjct: 195 FMFATSWKLTLLALVIVPVISIAVRKFGRFLRELSHQTQAAAAVASSIAEESFGAIRTVR 254
Query: 325 VYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQ 384
+ E E+ RY +++ + ++++ G+++ + V+ V+ G + G
Sbjct: 255 SFAQESHEVLRYGEKVDETLKLGLKQAKVVGMFSGGLNAASTLSVVIVVIYGANLTINGY 314
Query: 385 VSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ 444
++ LT ++LY + + + ++++++ GA+ +VFQL+D + S +
Sbjct: 315 MTTGSLTSFILYSLTVGSSVSALSGLYTTVMKASGASRRVFQLLDRVSSMANSGDRCPTN 374
Query: 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504
G V+ ++ F YPSRP+ IL + L + VA+VG SG GK+T NL+ R Y+P
Sbjct: 375 ENDGEVELDDVWFAYPSRPSHMILKGITLKLTPGSKVALVGPSGGGKTTIANLIERFYDP 434
Query: 505 SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAK 564
G+I ++G PL ++ ++L K+ V QEP L I+ NI YG + D+E AAK
Sbjct: 435 LKGRILLNGVPLPEISHQFLHRKVSIVSQEPVLFNCSIEENIAYGLEGKASSADVENAAK 494
Query: 565 QAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622
A H FI S P Y+T+V + LSGGQKQR+AIARA+L +P +LLLDEATSALD+ES
Sbjct: 495 MANAHNFICSFPDQYKTVVGERGIRLSGGQKQRVAIARALLMNPRVLLLDEATSALDAES 554
Query: 623 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRL 682
E+ V+ + +L RTV+VIAHRLST+K+ D + VI DG+I+E G H ELL + +
Sbjct: 555 EYLVQDAMDSLMKG----RTVLVIAHRLSTVKSADTVAVISDGQIVESGTHDELLSRDGI 610
Query: 683 YAKLVKRQ 690
Y LVKRQ
Sbjct: 611 YTALVKRQ 618
|
May be involved in redistribution of internalized aluminum. May mediate vacuolar sequestration of a metal complex. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q56A55|ABCB8_DANRE ATP-binding cassette sub-family B member 8, mitochondrial OS=Danio rerio GN=abcb8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 327 bits (837), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 204/514 (39%), Positives = 291/514 (56%), Gaps = 25/514 (4%)
Query: 193 GCFSIANIVLVKR--------LRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNV 244
G + I+L+ R +R TL+++LL QD+ FFD G L +RLT+D Q +
Sbjct: 204 GLLTSGYIILLSRVGERVAADMRTTLFTSLLRQDIAFFDANKTGQLVNRLTSDIQEFKSS 263
Query: 245 IGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQE 304
I+ LR++ Q G F++L +S LT +++ L ++ G + ++ S QE
Sbjct: 264 FKLVISQGLRSATQTVGCFVSLYFISPKLTGLTVVVLPCLVGAGALIGSFLRKLSRKAQE 323
Query: 305 CNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL---WNMSF 361
A A VA E L +RTVR + E++EL Y ++K A + E++ G+ +S
Sbjct: 324 QVAKATGVADEALGNVRTVRAFAMEDRELEMYAAEVQKSA--AMNETLGTGIAVFQGLSN 381
Query: 362 ITLYRSTQVMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGA 420
I L + V+ + G S+M +SP L +++ + + + + +++ + A
Sbjct: 382 IVL--NCIVLGTIFAGGSLMARDDLSPGDLMSFLVASQTVQRSLASISILFGQMVRGMSA 439
Query: 421 TEKVFQLIDLLPSNQFLSEG-VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE 479
+VF+ + L PS G + L LMG V F+NISF YP+RP IL H LT+ +
Sbjct: 440 GARVFEYLALDPSVPLTGGGRIPLDSLMGRVDFMNISFSYPTRPGNQILKHFSLTLPPCK 499
Query: 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK-IGFVGQEPQLL 538
VAIVG SG GKST LL R Y+PS G + +DG + LD WLR IGF+ QEP L
Sbjct: 500 TVAIVGESGGGKSTVAALLERFYDPSSGVVMLDGLDIRTLDPSWLRGHVIGFISQEPVLF 559
Query: 539 QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRI 596
+ NI +G P E + AAKQA H FI GY T+V + LSGGQKQRI
Sbjct: 560 GTSVMENIRFGKPSATDAEVVS-AAKQANAHNFITGFADGYNTVVGERGVTLSGGQKQRI 618
Query: 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV 656
AIARA++++P+IL+LDEATSALD+ESE V+ L + T RTV++IAHRLSTI+A
Sbjct: 619 AIARALVKNPSILILDEATSALDAESERVVQEAL----DRATTGRTVLIIAHRLSTIQAA 674
Query: 657 DRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 690
D I V+ +GRI+E G H ELL KG LYA+L+KRQ
Sbjct: 675 DLICVMSNGRIVEAGTHLELLSKGGLYAELIKRQ 708
|
Danio rerio (taxid: 7955) |
| >sp|Q54BU4|ABCB1_DICDI ABC transporter B family member 1 OS=Dictyostelium discoideum GN=abcB1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 324 bits (830), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 200/578 (34%), Positives = 326/578 (56%), Gaps = 10/578 (1%)
Query: 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAV-FSAQREEAMVFHKSSRFLV 178
L R+ L + I+L A+ +L+ ++++ + MP V A + S+ LV
Sbjct: 336 LKRLIQLSRPELPIILAAMVALVFSSLTSLAMPYFFGSIVQVVATTHSFNNLNSSTLALV 395
Query: 179 LLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADC 238
++ V I + +RS F +A V R+R L+S+++ Q++ +FD G L SRL++D
Sbjct: 396 VIFVIGSISTLVRSWLFYLAGQKFVARIRRNLFSSIVNQEIGYFDQCRTGELLSRLSSDS 455
Query: 239 QRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRA 298
Q + N + +I+M+ R ++Q G+ I L +W LTL L I L+I VYG+ K+
Sbjct: 456 QVIQNSVTVNISMLFRYTIQIIGSVILLFITNWRLTLLMLGIVPVLAISTVVYGKKIKQL 515
Query: 299 SVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 358
Q+ A ++ +E + +RTVR + E+K + Y + I ++A G+++
Sbjct: 516 GKQFQDELAKSSTTGEEVISNIRTVRSFSKEQKFIDLYSKDINGSYLIGKSLAVATGVFS 575
Query: 359 MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSI 418
+ + V+ V +G ++ G +S LT ++LY L + + ++ L++I
Sbjct: 576 GIVFLVAQLAIVLIVYVGARQVLDGTLSTGDLTSFLLYTLSLAMSLAFISSLMTDFLKAI 635
Query: 419 GATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEAN 478
G+++++F++ D +P+ +S G ++Q +G ++ ++ F YP+RP +L + L +
Sbjct: 636 GSSDRIFEIFDRVPAIN-VSGGKQIQNPLGEIELKDVEFSYPTRPNNSVLKGLNLKLSKG 694
Query: 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL 538
+ A+VG SG GKST + ++ R Y+P+ G I DG + +LD W R IG+V QEP L
Sbjct: 695 TITALVGPSGGGKSTVIAMIERFYDPNSGSITFDGIDIKELDPVWYRGIIGYVSQEPVLF 754
Query: 539 QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRI 596
IK NI +G ++ I AA++A H FI GY+T+V + LSGGQKQR+
Sbjct: 755 AGSIKDNITFGNDSATMDQIIS-AAEKANAHSFIEEFENGYDTIVGERGVRLSGGQKQRV 813
Query: 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV 656
AIARA++++P ILLLDEATSALD+ESE+ VK + + D RTVIVIAHRLST+
Sbjct: 814 AIARAMIQNPMILLLDEATSALDAESEYLVKQAIDEIMKD----RTVIVIAHRLSTVINA 869
Query: 657 DRIVVIDDGRIIEVGNHAELLHKGR-LYAKLVKRQTES 693
+ +VVI+ G+I E+G H ELL+ +Y LVKRQ S
Sbjct: 870 NTVVVINQGKIEEMGTHKELLNNTDGIYHNLVKRQLSS 907
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q54W24|ABCB4_DICDI ABC transporter B family member 4 OS=Dictyostelium discoideum GN=abcB4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 320 bits (819), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 194/569 (34%), Positives = 316/569 (55%), Gaps = 16/569 (2%)
Query: 124 WNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVT 183
+ IG D W+ + + ++ + +P++ + + +++ +LL
Sbjct: 201 FKTIGNDIWLFGFGIITAFFSSWVGLQIPKVFGVLIDCTKNGDSLQGPAIQAIFILLAQA 260
Query: 184 SGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSN 243
F L S S+A RLR TL+ A+L Q++ FFD + G L +RL++D Q + +
Sbjct: 261 GLNF--LYSTMISVACERYSARLRSTLFGAMLEQEIGFFDQNSTGDLINRLSSDVQLVRS 318
Query: 244 VIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQ 303
+ + +++ +++ Q G I+L+ +S L+L + I + + + Y + K SV +Q
Sbjct: 319 ALKHSVSLGVKSFGQIVGGVISLILISPKLSLGMMTILPTMVSVGTFYAGWLKSLSVRSQ 378
Query: 304 ECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFIT 363
A + VA+E + +RTV+ + + E R+ + + + G++
Sbjct: 379 RAQAQSTIVAEEAIGNIRTVQAFSNQHYESERFIEKNQHSLALSTESGVQIGIFQGVTSL 438
Query: 364 LYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEK 423
S ++ GG + G+++ QLT ++++ + + ++ + ++ ++G ++
Sbjct: 439 ALNSVSLLVYWYGGTLVSRGEMTGGQLTSFIIHTMNMQSSFSQLSILFTQIMSAMGGMQR 498
Query: 424 VFQLIDLLP---SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEV 480
+ +LI+ +P SNQ G KL+ L G ++F+N+ F YP+RP V +LN + LT++ +V
Sbjct: 499 ITELINRVPLINSNQ----GFKLRELKGEIKFINVDFKYPTRPHVHVLNGLNLTLKPGQV 554
Query: 481 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM 540
VA+ G SG GKST LL R Y+ S+G I IDG+ + L+ +WLR +IG V QEP L
Sbjct: 555 VALAGSSGGGKSTIAGLLERFYDISNGDITIDGYSIKQLNAKWLRSRIGIVSQEPSLFAT 614
Query: 541 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAI 598
I N+ YG P ++E IE AAK A H+FI + P GYET+V + LSGGQKQRIAI
Sbjct: 615 TILENLRYGNPNATEDEIIE-AAKLANAHQFISNFPKGYETIVGERGVQLSGGQKQRIAI 673
Query: 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDR 658
ARAIL++P I++LDEATSALDS+SE V+ L L RT +VIAHRLST++ D
Sbjct: 674 ARAILKNPQIIILDEATSALDSQSELLVQTALDNLMKG----RTTLVIAHRLSTVQNADL 729
Query: 659 IVVIDDGRIIEVGNHAELLHKGRLYAKLV 687
I V+ G+I E GNH EL++ LY KLV
Sbjct: 730 IGVLSHGKIAEFGNHNELMNHKGLYYKLV 758
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9JI39|ABCBA_MOUSE ATP-binding cassette sub-family B member 10, mitochondrial OS=Mus musculus GN=Abcb10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 318 bits (814), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 209/587 (35%), Positives = 331/587 (56%), Gaps = 23/587 (3%)
Query: 121 SRMWNLIG---RDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFL 177
S +W L+G ++ + AV L V++V ++ P L + + + S L
Sbjct: 120 SEVWKLLGLVRPERGRLSAAVGFLAVSSVITMSAPFFLGRIIDVIYTNPSEGYGDSLTRL 179
Query: 178 --VLLCV--TSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSR 233
VL CV +G+R + +V RLR +L+S++L Q+V FFD G L +R
Sbjct: 180 CAVLTCVFLCGAAANGIRVYLMQSSGQSIVNRLRTSLFSSILRQEVAFFDKTRTGELINR 239
Query: 234 LTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQ 293
L++D L + +++ LR Q + + +S L L + +S++ +YG+
Sbjct: 240 LSSDTALLGRSVTENLSDGLRAGAQASVGVGMMFFVSPSLATFVLSVVPPISVLAVIYGR 299
Query: 294 YQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMA 353
Y ++ S TQ+ A A +A+E + +RT+R +G E E+ +Y +++L + +E++A
Sbjct: 300 YLRKLSKATQDSLAEATQLAEERIGNIRTIRAFGKEMTEVEKYTGRVDQLLQLAQKEALA 359
Query: 354 Y-GLWNMSFITLYRSTQVMAVLL-GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNL 411
G + + L + V++VL GG+ + ++ +L+ +++Y W+ + +
Sbjct: 360 RAGFFGAA--GLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGLSIGGLSSFY 417
Query: 412 SSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL--QRLMGHVQFVNISFHYPSRPTVPILN 469
S L++ +GA ++++L++ P F +EG+ L + G ++F N+ F YP+RP V +
Sbjct: 418 SELMKGLGAGGRLWELLERQPRLPF-NEGMVLDEKTFQGALEFRNVHFTYPARPEVSVFQ 476
Query: 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529
L+I + V A+VG SGSGKST V+LLLRLY+P+ G + +DG + L+ WLR KIG
Sbjct: 477 DFSLSIPSGSVTALVGPSGSGKSTVVSLLLRLYDPNSGTVSLDGHDIRQLNPVWLRSKIG 536
Query: 530 FVGQEPQLLQMDIKSNIMYGCPK--DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD- 586
V QEP L + NI YG V + +E AA+ A EFI S P G++T+V +
Sbjct: 537 TVSQEPVLFSCSVAENIAYGADNLSSVTAQQVERAAEVANAAEFIRSFPQGFDTVVGEKG 596
Query: 587 -LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 645
LLSGGQKQRIAIARA+L++P ILLLDEATSALD+E+EH V+ L L RTV++
Sbjct: 597 ILLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEHLVQEALDRLMEG----RTVLI 652
Query: 646 IAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKLVKRQT 691
IAHRLSTIK + + V+D G+I E G H ELL K LY KL+ +Q+
Sbjct: 653 IAHRLSTIKNANFVAVLDHGKICEHGTHEELLLKPNGLYRKLMNKQS 699
|
May mediate critical mitochondrial transport functions related to heme biosynthesis. Mus musculus (taxid: 10090) |
| >sp|Q9NRK6|ABCBA_HUMAN ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 317 bits (811), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 193/499 (38%), Positives = 297/499 (59%), Gaps = 16/499 (3%)
Query: 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAG 261
+V RLR +L+S++L Q+V FFD G L +RL++D L + +++ LR Q +
Sbjct: 243 IVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASV 302
Query: 262 AFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMR 321
+ +S L L + +SII +YG+Y ++ + +TQ+ A A +A+E + +R
Sbjct: 303 GISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVR 362
Query: 322 TVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY-GLWNMSFITLYRSTQVMAVLL-GGMS 379
TVR +G E E+ +Y ++ + + +E+ A G + + L + V++VL GG+
Sbjct: 363 TVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGAT--GLSGNLIVLSVLYKGGLL 420
Query: 380 IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 439
+ ++ +L+ +++Y W+ + + S L++ +GA ++++L++ P F +E
Sbjct: 421 MGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPF-NE 479
Query: 440 GVKL--QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 497
GV L + G ++F N+ F YP+RP VPI L+I + V A+VG SGSGKST ++L
Sbjct: 480 GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSL 539
Query: 498 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC--PKDVK 555
LLRLY+P+ G I +DG + L+ WLR KIG V QEP L I NI YG P V
Sbjct: 540 LLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVT 599
Query: 556 NEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDE 613
E+I+ A+ A FI + P G+ T+V + LLSGGQKQRIAIARA+L++P ILLLDE
Sbjct: 600 AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDE 659
Query: 614 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 673
ATSALD+E+E+ V+ L L + RTV+VIAHRLSTIK + + V+D G+I E G H
Sbjct: 660 ATSALDAENEYLVQEALDRLMDG----RTVLVIAHRLSTIKNANMVAVLDQGKITEYGKH 715
Query: 674 AELLHK-GRLYAKLVKRQT 691
ELL K +Y KL+ +Q+
Sbjct: 716 EELLSKPNGIYRKLMNKQS 734
|
May mediate critical mitochondrial transport functions related to heme biosynthesis. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 695 | ||||||
| 225452338 | 658 | PREDICTED: ABC transporter B family memb | 0.867 | 0.916 | 0.698 | 0.0 | |
| 225470565 | 705 | PREDICTED: ABC transporter B family memb | 0.972 | 0.958 | 0.625 | 0.0 | |
| 255560910 | 682 | abc transporter, putative [Ricinus commu | 0.922 | 0.939 | 0.642 | 0.0 | |
| 296080955 | 587 | unnamed protein product [Vitis vinifera] | 0.843 | 0.998 | 0.677 | 0.0 | |
| 357485675 | 712 | ABC transporter B family member [Medicag | 0.902 | 0.880 | 0.626 | 0.0 | |
| 356501630 | 701 | PREDICTED: ABC transporter B family memb | 0.991 | 0.982 | 0.571 | 0.0 | |
| 255574019 | 684 | abc transporter, putative [Ricinus commu | 0.866 | 0.880 | 0.624 | 0.0 | |
| 356497303 | 701 | PREDICTED: ABC transporter B family memb | 0.920 | 0.912 | 0.608 | 0.0 | |
| 297838869 | 700 | ATTAP1 [Arabidopsis lyrata subsp. lyrata | 0.941 | 0.934 | 0.591 | 0.0 | |
| 30698733 | 700 | ABC transporter B family member 26 [Arab | 0.941 | 0.934 | 0.588 | 0.0 |
| >gi|225452338|ref|XP_002272855.1| PREDICTED: ABC transporter B family member 26, chloroplastic [Vitis vinifera] gi|296087608|emb|CBI34864.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/607 (69%), Positives = 504/607 (83%), Gaps = 4/607 (0%)
Query: 88 IRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVS 147
IR V PGGSWW LS+ +E AK V L R+W L+ ++W++ VAV SL +AA+S
Sbjct: 55 IRSVLPGGSWWKLSEYEE----EAKAREVMPTLRRIWVLVEDERWVIFVAVGSLTLAALS 110
Query: 148 EITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLR 207
EI+MP ++A +VFSAQ E MVF+++S+ L+LLC+ SGI SGLRSGCF+IANI LVKRLR
Sbjct: 111 EISMPNLIAASVFSAQSGETMVFYRNSQLLILLCILSGICSGLRSGCFAIANITLVKRLR 170
Query: 208 ETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLL 267
ETL SA+LFQD+ FF+TEAVG LTSRL ADCQ+LSN+IGNDINMILRN LQGAGA I+LL
Sbjct: 171 ETLCSAILFQDIDFFETEAVGDLTSRLGADCQQLSNIIGNDINMILRNFLQGAGALIHLL 230
Query: 268 TLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYG 327
TLSWPL LS ++ICS LS I VYGQY+++A++ TQE A AN VAQET +MRTVR YG
Sbjct: 231 TLSWPLALSTIVICSVLSAIFLVYGQYRRKAAMFTQEFTACANEVAQETFSLMRTVRTYG 290
Query: 328 TEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSP 387
TEE EL RYK WL+KLAF+ IRES+AYG W +SF TLYRSTQV+AVLLGGMSI+ G V+P
Sbjct: 291 TEENELRRYKQWLDKLAFVSIRESVAYGFWGLSFNTLYRSTQVIAVLLGGMSILTGHVTP 350
Query: 388 EQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLM 447
EQLTKY+LYCEWLIY T R+ DN +SLLQS+GA+ KVFQL+DLLPS+QF SEGVKL+RLM
Sbjct: 351 EQLTKYILYCEWLIYGTLRLGDNFASLLQSVGASGKVFQLMDLLPSDQFKSEGVKLKRLM 410
Query: 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
GH++F N+SF+YPSR VP+L HV ++++ANEVVAIVG+SGSGKS+ VNLLLRLYEP+ G
Sbjct: 411 GHIEFANVSFYYPSRVMVPVLEHVNISVQANEVVAIVGISGSGKSSLVNLLLRLYEPTTG 470
Query: 508 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAY 567
QI IDGFPL +LDI WLR KIGFVGQEP L MD+KSNI YGC +D+ EDIEWAAK AY
Sbjct: 471 QILIDGFPLRELDIGWLRGKIGFVGQEPHLFHMDVKSNIRYGCSRDIGQEDIEWAAKLAY 530
Query: 568 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
H FI SLP GY+T++DD LLSGGQKQRIAIARAILR PAIL+LDEATSALD+ESEHYV+
Sbjct: 531 AHGFISSLPDGYDTIIDDHLLSGGQKQRIAIARAILRGPAILILDEATSALDAESEHYVE 590
Query: 628 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 687
GVLHA RND KRTVIVIAHRLST+KA DRIVV+D G +IEVG+H +LL K LYAKL+
Sbjct: 591 GVLHAFRNDANAKRTVIVIAHRLSTVKAADRIVVMDGGSVIEVGDHQQLLLKDGLYAKLI 650
Query: 688 KRQTESL 694
K QT++L
Sbjct: 651 KTQTDAL 657
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470565|ref|XP_002272060.1| PREDICTED: ABC transporter B family member 26, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/689 (62%), Positives = 541/689 (78%), Gaps = 13/689 (1%)
Query: 6 HTNLHSVTAFYPTHTKPLPIFTVKIPHFKSKHQFQIISNNKKFKRVSFPITNSAFTDSGV 65
+ +H ++ F T+TK LP F P + F S K F + NS
Sbjct: 29 NNTIHGISRF-TTNTK-LPFFQCTSPPNCRLNSF---STPKSASVNGFSVHNSN------ 77
Query: 66 PNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWN 125
P ND + +F F++LV FIR ++PGGSWW+LSD + TAKP+TV AL RMW
Sbjct: 78 PEGSENDQV-EFPKRFRELVHFIRSIWPGGSWWSLSDHADFIM-TAKPVTVLRALQRMWG 135
Query: 126 LIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSG 185
L+ +D+WI+ A ++L++AAVSEI++P L ++FSAQ E +VFH++ LV LC SG
Sbjct: 136 LVAKDRWIIFAAFSALVLAAVSEISIPHFLTASIFSAQSGEIVVFHRNVGLLVFLCFASG 195
Query: 186 IFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVI 245
I SGLR CF IAN++LVKR+RETLYSALLFQD+ FFD E VG LTSRL ADCQ++S VI
Sbjct: 196 ICSGLRGCCFGIANMILVKRMRETLYSALLFQDISFFDNETVGDLTSRLGADCQQVSRVI 255
Query: 246 GNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQEC 305
GND+N+ILRN LQG GA I LL LSWPL L ++ICS L II+ +YG+YQK+A+ L QE
Sbjct: 256 GNDLNLILRNVLQGTGALIYLLVLSWPLGLCTMMICSTLLIIMLLYGRYQKKAAKLIQEF 315
Query: 306 NAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY 365
A AN VAQET +MRTVRVYGTEE+E+GRYK WL K+A I +R+S AYGLWN+SF TLY
Sbjct: 316 TASANEVAQETFSLMRTVRVYGTEEQEVGRYKQWLGKIADISLRQSAAYGLWNLSFNTLY 375
Query: 366 RSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVF 425
STQV+AVL+GGMSI+ G ++ EQLTK++LY EWLIY+TW + DNLSSL+QS+GA+EKVF
Sbjct: 376 HSTQVIAVLIGGMSILAGHITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVF 435
Query: 426 QLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVG 485
QL+DLLPS+QF+S+G+KLQRL+GH++FVN+SF+Y SR VP+L HV +++ NEV+AIVG
Sbjct: 436 QLMDLLPSDQFISKGLKLQRLLGHIEFVNVSFYYASRAMVPVLQHVNISVHPNEVLAIVG 495
Query: 486 LSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 545
LSGSGKST VNLLLRLYEP+DGQ+ IDGFPL +LD++WLRE+IGFVGQEP+L +MDI SN
Sbjct: 496 LSGSGKSTIVNLLLRLYEPTDGQVLIDGFPLQELDVKWLRERIGFVGQEPRLFRMDISSN 555
Query: 546 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605
I YGC +D+K +D+EWAAKQAY H+FILSLP GY+TLVD+DLLSGGQKQRIAIARA+LRD
Sbjct: 556 IRYGCTRDIKQKDVEWAAKQAYAHDFILSLPNGYKTLVDNDLLSGGQKQRIAIARALLRD 615
Query: 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG 665
P IL+LDEATSALD+ESEH VK VL ALR+D KTKRTVIVIAHRLSTI+A DRIVV+D G
Sbjct: 616 PTILVLDEATSALDAESEHNVKNVLRALRSDLKTKRTVIVIAHRLSTIQAADRIVVMDGG 675
Query: 666 RIIEVGNHAELLHKGRLYAKLVKRQTESL 694
RI+E+G+H ELL K +YA+L +RQ +++
Sbjct: 676 RIVEMGSHMELLLKDGIYARLTRRQADAV 704
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255560910|ref|XP_002521468.1| abc transporter, putative [Ricinus communis] gi|223539367|gb|EEF40958.1| abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/665 (64%), Positives = 515/665 (77%), Gaps = 24/665 (3%)
Query: 33 FKSKHQFQIISNNKKFKRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVF 92
F+SK+Q + +++ FP S + N S + +KF F++
Sbjct: 40 FQSKYQSPVTCRRIRYRGFKFP-------HSALDTNNSKN--LKFLQNFRN--------- 81
Query: 93 PGGSWWNLSDGQEAENPT--AKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEIT 150
WW LSD +E E+ + +TV AL RM LIG +KWI+ VA SLI AA+SEIT
Sbjct: 82 ----WWYLSDSKEVESSSNGKNSMTVLEALLRMLKLIGNEKWIMFVAFGSLITAAISEIT 137
Query: 151 MPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETL 210
MP ILAE++FSAQ AM F ++++ L LC+ SGI SGLRS F++ANI+LVKRLRETL
Sbjct: 138 MPSILAESIFSAQNCHAMAFSRNAQLLGFLCLISGISSGLRSVSFAVANIILVKRLRETL 197
Query: 211 YSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLS 270
YSAL+FQD+ FFD+E VGGLTSRL +DCQRLS+VIGNDI++I+RN LQG GA INLL LS
Sbjct: 198 YSALIFQDINFFDSEEVGGLTSRLGSDCQRLSHVIGNDIHLIVRNVLQGTGAMINLLCLS 257
Query: 271 WPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEE 330
WPL LS++LIC L+ VYG YQK+A+ LTQ+ AHAN A+ETL ++RTVRVYGTE
Sbjct: 258 WPLALSSILICCLLAATFLVYGWYQKKAAKLTQDFTAHANEAAEETLSLIRTVRVYGTER 317
Query: 331 KELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQL 390
KE RYK WL+KLAFI RES AYGLW M F LYR+TQV AVLLGGMS+M G VS EQL
Sbjct: 318 KEFRRYKHWLQKLAFISYRESAAYGLWTMIFHGLYRATQVFAVLLGGMSVMSGHVSTEQL 377
Query: 391 TKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHV 450
TKY+LYCEWLIYATWR+VDN+SSLLQ+IGA+EKVFQL+ L PS+QFLS+G KL RLMG V
Sbjct: 378 TKYILYCEWLIYATWRVVDNISSLLQAIGASEKVFQLMQLSPSSQFLSKGEKLPRLMGQV 437
Query: 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510
FV+++FHYPSRPTVPIL H+ L +EANEVVA+VGLSGSGK+T VNLLLRLYEPS+GQIY
Sbjct: 438 HFVDVTFHYPSRPTVPILEHIHLLLEANEVVALVGLSGSGKTTLVNLLLRLYEPSNGQIY 497
Query: 511 IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE 570
IDGFPL +LD+R L+E IG+V QEPQL + DIKSNI YGC +DVK EDIE+AAK A HE
Sbjct: 498 IDGFPLRELDMRCLKENIGYVEQEPQLFRTDIKSNITYGCYRDVKMEDIEYAAKLADAHE 557
Query: 571 FILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 630
FI SLP GYETLVD++LLSGGQKQRIA ARAILR+PAIL+LDEATSALDSESEHY+KG+L
Sbjct: 558 FISSLPFGYETLVDNELLSGGQKQRIAFARAILRNPAILILDEATSALDSESEHYIKGIL 617
Query: 631 HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 690
+A + D KTKRTVIVI HRLSTIK DRI+V+D GR++EVGNH +L + LY++L+K Q
Sbjct: 618 YAFKTDEKTKRTVIVITHRLSTIKTADRIIVMDGGRVVEVGNHVKLQLQDGLYSQLIKLQ 677
Query: 691 TESLT 695
LT
Sbjct: 678 EGVLT 682
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296080955|emb|CBI18648.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/586 (67%), Positives = 492/586 (83%)
Query: 110 TAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMV 169
TAKP+TV AL RMW L+ +D+WI+ A ++L++AAVSEI++P L ++FSAQ E +V
Sbjct: 2 TAKPVTVLRALQRMWGLVAKDRWIIFAAFSALVLAAVSEISIPHFLTASIFSAQSGEIVV 61
Query: 170 FHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGG 229
FH++ LV LC SGI SGLR CF IAN++LVKR+RETLYSALLFQD+ FFD E VG
Sbjct: 62 FHRNVGLLVFLCFASGICSGLRGCCFGIANMILVKRMRETLYSALLFQDISFFDNETVGD 121
Query: 230 LTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVS 289
LTSRL ADCQ++S VIGND+N+ILRN LQG GA I LL LSWPL L ++ICS L II+
Sbjct: 122 LTSRLGADCQQVSRVIGNDLNLILRNVLQGTGALIYLLVLSWPLGLCTMMICSTLLIIML 181
Query: 290 VYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIR 349
+YG+YQK+A+ L QE A AN VAQET +MRTVRVYGTEE+E+GRYK WL K+A I +R
Sbjct: 182 LYGRYQKKAAKLIQEFTASANEVAQETFSLMRTVRVYGTEEQEVGRYKQWLGKIADISLR 241
Query: 350 ESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVD 409
+S AYGLWN+SF TLY STQV+AVL+GGMSI+ G ++ EQLTK++LY EWLIY+TW + D
Sbjct: 242 QSAAYGLWNLSFNTLYHSTQVIAVLIGGMSILAGHITAEQLTKFILYSEWLIYSTWWVGD 301
Query: 410 NLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN 469
NLSSL+QS+GA+EKVFQL+DLLPS+QF+S+G+KLQRL+GH++FVN+SF+Y SR VP+L
Sbjct: 302 NLSSLMQSVGASEKVFQLMDLLPSDQFISKGLKLQRLLGHIEFVNVSFYYASRAMVPVLQ 361
Query: 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529
HV +++ NEV+AIVGLSGSGKST VNLLLRLYEP+DGQ+ IDGFPL +LD++WLRE+IG
Sbjct: 362 HVNISVHPNEVLAIVGLSGSGKSTIVNLLLRLYEPTDGQVLIDGFPLQELDVKWLRERIG 421
Query: 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS 589
FVGQEP+L +MDI SNI YGC +D+K +D+EWAAKQAY H+FILSLP GY+TLVD+DLLS
Sbjct: 422 FVGQEPRLFRMDISSNIRYGCTRDIKQKDVEWAAKQAYAHDFILSLPNGYKTLVDNDLLS 481
Query: 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 649
GGQKQRIAIARA+LRDP IL+LDEATSALD+ESEH VK VL ALR+D KTKRTVIVIAHR
Sbjct: 482 GGQKQRIAIARALLRDPTILVLDEATSALDAESEHNVKNVLRALRSDLKTKRTVIVIAHR 541
Query: 650 LSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTESLT 695
LSTI+A DRIVV+D GRI+E+G+H ELL K +YA+L +RQ +++
Sbjct: 542 LSTIQAADRIVVMDGGRIVEMGSHMELLLKDGIYARLTRRQADAVA 587
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357485675|ref|XP_003613125.1| ABC transporter B family member [Medicago truncatula] gi|355514460|gb|AES96083.1| ABC transporter B family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/640 (62%), Positives = 503/640 (78%), Gaps = 13/640 (2%)
Query: 67 NNESNDNII-KFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWN 125
N+ES N +F D + LV+F+ +FPGG+WWN SD E + +P+TVW AL +MWN
Sbjct: 73 NSESASNASDEFLDRIRKLVSFLPSIFPGGTWWNFSDDVEV-SMFNQPVTVWYALGKMWN 131
Query: 126 LIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSG 185
L+ +D+W++ A ++LI+AAVSEI++P L ++FSAQ + VFH + R L+L+CVTSG
Sbjct: 132 LVAKDRWVIFAAFSALIIAAVSEISIPHFLTASIFSAQGGDIKVFHGNVRLLILMCVTSG 191
Query: 186 IFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVI 245
I SG+R F IAN++LVKR+RETLYS+LL QD+ FFD E VG LTSRL ADCQ++S VI
Sbjct: 192 ICSGIRGCFFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVI 251
Query: 246 GNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQEC 305
GND+N+ILRN LQG G+ I LL LSWPL L L+ICS L+ ++ YG YQK+A+ L QE
Sbjct: 252 GNDLNLILRNVLQGGGSLIYLLILSWPLGLCTLVICSILAAVMLRYGWYQKKAARLIQEV 311
Query: 306 NAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY 365
A ANNVAQET ++RTVRVYGTEE+E GRYK WLEKLA I +R+S AYG WN SF TLY
Sbjct: 312 TASANNVAQETFSLIRTVRVYGTEEEEHGRYKWWLEKLADISLRQSAAYGFWNFSFNTLY 371
Query: 366 RSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVF 425
STQ++AVL GGMSI+ G ++ E+LTK++LY EWLIY+TW + DN+S+L+QS+GA+EKVF
Sbjct: 372 HSTQIIAVLFGGMSILSGHITAEKLTKFILYSEWLIYSTWWVGDNVSNLMQSVGASEKVF 431
Query: 426 QLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVG 485
L+DL PSNQF++EGVKLQ L GH++FVN+SFHYPSRPTV ++ HV + +EVVAIVG
Sbjct: 432 NLMDLSPSNQFITEGVKLQSLTGHIEFVNVSFHYPSRPTVHVVQHVNFVVNPSEVVAIVG 491
Query: 486 LSGSGKSTFVNLLLRLYEPSDGQ-----------IYIDGFPLTDLDIRWLREKIGFVGQE 534
LSGSGKST VNLLLRLYEP+ GQ I IDG P DLD+ W RE+IG+VGQE
Sbjct: 492 LSGSGKSTLVNLLLRLYEPTSGQVLIPSILDSLPILIDGVPHKDLDVMWWRERIGYVGQE 551
Query: 535 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594
P+L +MDI SNI YGC +DV EDIEWAAKQAY H+FI +LP GYETLVDDDLLSGGQKQ
Sbjct: 552 PKLFRMDISSNIRYGCTRDVNQEDIEWAAKQAYAHDFISALPSGYETLVDDDLLSGGQKQ 611
Query: 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 654
RIAIARAILRDP IL+LDEATSALD+ESEH VKGVL ++R+D T+R+VIVIAHRLSTI+
Sbjct: 612 RIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSSTRRSVIVIAHRLSTIQ 671
Query: 655 AVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTESL 694
A DRI+V+D G+I+E G+H ELL K LYA+L ++Q +++
Sbjct: 672 AADRIIVMDKGQIVENGSHRELLLKDGLYARLTRKQADTM 711
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501630|ref|XP_003519627.1| PREDICTED: ABC transporter B family member 26, chloroplastic-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/703 (57%), Positives = 516/703 (73%), Gaps = 14/703 (1%)
Query: 1 MATSPHTNLHSVTAFYPTHTKPLPIFTVKIPHFKSKHQFQIISNNKKFKRVSFPITNSAF 60
+A +P ++L +P P+ T F ++ +++ S P ++
Sbjct: 5 LARTPPSSLSP----FPLQNARAPLITASQKRFPLAATRIVLFTSRRSILASPPPKCASI 60
Query: 61 TDSGVPNNESND--------NIIKFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAK 112
VPNN N + + + V + + PGG WW S G A+
Sbjct: 61 NGVSVPNNPEASGEEQQQVYNASELLERIRKWVGILPSILPGGRWWEFS-GDVDVQVVAQ 119
Query: 113 PITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHK 172
P+TVW AL +MW+L+ D+W++ A ++LIVAA+SEI++P +L ++FSAQ + V+H+
Sbjct: 120 PVTVWRALGKMWDLVAGDRWVIFAAFSALIVAAISEISIPHLLTASIFSAQSADLTVYHR 179
Query: 173 SSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTS 232
+ R LVLLCV SGI SG+R F IAN++LVKR+RETLYS+LL QD+ FFD E VG LTS
Sbjct: 180 NVRLLVLLCVASGICSGIRGCFFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTS 239
Query: 233 RLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYG 292
RL ADCQ++S VIGND+N+I+RN LQG G+ I LL LSWPL LS L++CS L+ ++ YG
Sbjct: 240 RLGADCQQVSRVIGNDLNLIMRNVLQGGGSLIYLLILSWPLGLSTLVVCSILAAVMLRYG 299
Query: 293 QYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 352
+YQK+A+ L QE A AN+VAQET ++RTVRVYGTEE+E GRYK WLEKLA I +R+S
Sbjct: 300 RYQKKAARLIQEVTASANDVAQETFSLVRTVRVYGTEEEEHGRYKWWLEKLADISLRQSA 359
Query: 353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLS 412
AYG+WN SF LY STQV+AVL GGMSI+ G ++ E+LTK++LY EWLIY+TW + DN+S
Sbjct: 360 AYGVWNFSFNILYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNIS 419
Query: 413 SLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVC 472
+L+QS+GA+EKVF L+DLLPS+QF+ GV LQRL G ++F+N+SFHYPSRPTV ++ HV
Sbjct: 420 NLMQSVGASEKVFHLMDLLPSSQFIERGVTLQRLTGRIEFLNVSFHYPSRPTVSVVQHVN 479
Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 532
+ EVVAIVGLSGSGKST VNLLLRLYEP++GQI ID PL DLDI W RE++GFVG
Sbjct: 480 FVVYPGEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILIDDIPLKDLDIMWWRERVGFVG 539
Query: 533 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 592
QEP+L +MDI SNI YGC +DVK EDIEWAAKQAY H FI +LP GYETLVDDDLLSGGQ
Sbjct: 540 QEPKLFRMDISSNIRYGCTRDVKQEDIEWAAKQAYAHNFISALPNGYETLVDDDLLSGGQ 599
Query: 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 652
KQRIAIARA+LRDP IL+LDEATSALD+ESEH VKGVL ++R+D T R+VIVIAHRLST
Sbjct: 600 KQRIAIARALLRDPKILILDEATSALDAESEHNVKGVLRSVRSDSAT-RSVIVIAHRLST 658
Query: 653 IKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTESLT 695
I+A DRIVV+D G IIE+G+H ELL K LYA+L ++Q +++
Sbjct: 659 IQAADRIVVMDGGHIIEMGSHRELLLKDGLYARLTRKQADAMA 701
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574019|ref|XP_002527927.1| abc transporter, putative [Ricinus communis] gi|223532702|gb|EEF34484.1| abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/629 (62%), Positives = 495/629 (78%), Gaps = 27/629 (4%)
Query: 67 NNESNDNIIKFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNL 126
N E ++ I KFF+ F+ + PGG+WW+ S+ E + AKP+T+W AL RMW L
Sbjct: 83 NYELHERIRKFFE-------FLPSILPGGNWWSFSEDVEMKY-LAKPVTIWKALGRMWQL 134
Query: 127 IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGI 186
+ +D+W++ A ++LIVAA+SEI++P L ++FSAQ + VFH++ R LVLLCV +GI
Sbjct: 135 VAQDRWVIFFAFSALIVAALSEISIPHFLTASIFSAQSTQIAVFHRNVRLLVLLCVIAGI 194
Query: 187 FSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIG 246
SGLR CF IAN++LVKR+RETLYSALL QD+ FFD+E VG LTSRL +DCQ++S VIG
Sbjct: 195 SSGLRGCCFGIANMILVKRMRETLYSALLLQDISFFDSETVGDLTSRLGSDCQQVSRVIG 254
Query: 247 NDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECN 306
ND+N+ILRN++QG GA I LL LSWPL S L + +YQK+A+ L QE
Sbjct: 255 NDLNLILRNAVQGTGALIYLLILSWPLVNSVLFV------------RYQKKAAKLIQEFT 302
Query: 307 AHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYR 366
A AN VAQET +MRTVR+YGTE+ E+ RYK+WLEKLA I +R+S AYG WN+SF TLY
Sbjct: 303 ASANQVAQETFSLMRTVRIYGTEKLEVERYKLWLEKLADISLRQSAAYGFWNLSFNTLYH 362
Query: 367 STQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQ 426
STQV+AVL+GGMSI+ G ++ EQLTK++LY EWLIY+TW + DNLSSL+QS+GA+EKVFQ
Sbjct: 363 STQVIAVLVGGMSILAGHITAEQLTKFILYSEWLIYSTWWVGDNLSSLMQSVGASEKVFQ 422
Query: 427 LIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGL 486
L+DLLP +KLQRLMGH++F NISFHYPSR VP+L HV + + EV+AIVGL
Sbjct: 423 LMDLLPR-------LKLQRLMGHIEFANISFHYPSRANVPVLQHVNIVVHPGEVIAIVGL 475
Query: 487 SGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 546
SGSGKST VNLLLRLYEP++GQI IDGFPL +LDI+WLRE+IG+VGQEP+L +MDI SNI
Sbjct: 476 SGSGKSTLVNLLLRLYEPTNGQILIDGFPLGELDIKWLRERIGYVGQEPKLFRMDISSNI 535
Query: 547 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606
YGC +DV +D+EWAAKQAY H+FI +LP GYETLVDDDLLSGGQKQRIAIARAILRDP
Sbjct: 536 RYGCTRDVNQKDVEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDP 595
Query: 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666
IL+LDEATSALD+ESEH +KGVL A+R+D T+RTVIVIAHRLSTI+A DRIVV+ G+
Sbjct: 596 TILILDEATSALDAESEHNIKGVLRAVRSDLTTRRTVIVIAHRLSTIQAADRIVVMSGGQ 655
Query: 667 IIEVGNHAELLHKGRLYAKLVKRQTESLT 695
I+E+G+H ELLH+ LYA+L +RQ +++
Sbjct: 656 IVEMGSHRELLHQDGLYARLTRRQADAVA 684
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497303|ref|XP_003517500.1| PREDICTED: ABC transporter B family member 26, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/648 (60%), Positives = 495/648 (76%), Gaps = 8/648 (1%)
Query: 54 PITNSAFTDSGVPNNESNDNIIKFF------DYFQDLVAFIRQVFPGGSWWNLSDGQEAE 107
P ++ VPNN + + D + V F+ + PGG WW S G
Sbjct: 56 PPKCASINGISVPNNPEASGEQQVYSASGLLDRIRKWVGFLPSILPGGRWWEFS-GDVDV 114
Query: 108 NPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEA 167
A+P+TVW AL +MW+L+ RD+W++ A ++LIVAAVSEI++P L ++FSAQ +
Sbjct: 115 QVVAQPVTVWRALGKMWDLVARDRWVIFAAFSALIVAAVSEISIPHFLTASIFSAQSADL 174
Query: 168 MVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAV 227
VFH++ R LVLLCV SGI SG+R F IAN++LVKR+RETLYS+LL QD+ FFD E V
Sbjct: 175 AVFHRNVRLLVLLCVASGICSGIRGCFFGIANMILVKRMRETLYSSLLLQDISFFDNETV 234
Query: 228 GGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSII 287
G LTSRL ADCQ++S VIGND+N+I+RN LQG G+ I LL LSWPL LS L++CS L+ +
Sbjct: 235 GDLTSRLGADCQQVSRVIGNDLNLIMRNVLQGGGSLIYLLILSWPLGLSTLVVCSILAAV 294
Query: 288 VSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIR 347
+ YG+YQK+A+ L QE A AN+VAQE ++RTVRVYGTEE+E GRYK WLEKLA I
Sbjct: 295 MLRYGRYQKKAARLIQEVTASANDVAQEMFSLIRTVRVYGTEEEEHGRYKWWLEKLADIS 354
Query: 348 IRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRM 407
+R+S AYG+WN SF LY STQV+AVL GGMSI+ G ++ E+LTK++LY EWLIY+TW +
Sbjct: 355 LRQSAAYGVWNFSFNILYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWV 414
Query: 408 VDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPI 467
DN+S+L+QS+GA+EKVF L+DL PS+QF+ GVKLQRL G ++F+N+SFHYPSRP +
Sbjct: 415 GDNISNLMQSVGASEKVFHLMDLSPSSQFIERGVKLQRLTGCIEFLNVSFHYPSRPMASV 474
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
+ HV + EVVAIVGLSGSGKST VNLLLRLYEP++GQI ID PL DLDI W RE+
Sbjct: 475 VQHVNFVVHPGEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILIDDIPLKDLDIMWWRER 534
Query: 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL 587
IGFVGQEP+L +MDI SNI YGC +DVK +DIEWAAKQAY H FI +LP GYETLVDDDL
Sbjct: 535 IGFVGQEPKLFRMDISSNIRYGCTQDVKQKDIEWAAKQAYAHNFISALPNGYETLVDDDL 594
Query: 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 647
LSGGQKQRIAIARA+LRDP IL+LDEATSALD+ESEH VKGVL ++R+D T R+VIVIA
Sbjct: 595 LSGGQKQRIAIARALLRDPKILILDEATSALDAESEHNVKGVLRSVRSDSAT-RSVIVIA 653
Query: 648 HRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTESLT 695
HRLSTI+A DRIVV+D G I+E+G+H ELL K LYA+L ++Q +++
Sbjct: 654 HRLSTIQAADRIVVMDGGEIVEMGSHRELLLKDGLYARLTRKQADAMA 701
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297838869|ref|XP_002887316.1| ATTAP1 [Arabidopsis lyrata subsp. lyrata] gi|297333157|gb|EFH63575.1| ATTAP1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/656 (59%), Positives = 501/656 (76%), Gaps = 2/656 (0%)
Query: 39 FQIISNNKKFKRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWW 98
Q S N + ++ N A ++ DN+ + + + FIR + PGGSWW
Sbjct: 46 LQSSSRNYRLPSINCSTVNGAVAETAEYYEGEGDNV-SVPEKIRQCIDFIRTILPGGSWW 104
Query: 99 NLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEA 158
+ SD + AKP+TVW AL+RMW L+ D+W++ A ++LIVAA+SEIT+P L +
Sbjct: 105 SFSDEVDGRF-IAKPVTVWRALTRMWELVAEDRWVIFAAFSTLIVAALSEITIPHFLTAS 163
Query: 159 VFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQD 218
+FSAQ + VF ++ + LV LCVTSGI SG+R F IAN++LVKR+RETLYS LLFQD
Sbjct: 164 IFSAQSGDIAVFRRNVKLLVTLCVTSGICSGIRGCFFGIANMILVKRMRETLYSTLLFQD 223
Query: 219 VYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278
+ FFD++ VG LTSRL +DCQ++S VIGND+NMI RN LQG GA I LL LSWPL L L
Sbjct: 224 ISFFDSQTVGDLTSRLGSDCQQVSRVIGNDLNMIFRNVLQGTGALIYLLILSWPLGLCTL 283
Query: 279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKI 338
+IC L+ ++ VYG YQK+ + L QE A AN VAQET +MRTVRVYGTE++E RY
Sbjct: 284 VICCILAAVMFVYGMYQKKTAKLIQEITASANEVAQETYSLMRTVRVYGTEKQEFKRYNH 343
Query: 339 WLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCE 398
WL++LA I +R+S AYG+WN SF TLY +TQ++AVL+GG+SI+ GQ++ EQLTK++LY E
Sbjct: 344 WLQRLADISLRQSAAYGIWNWSFNTLYHATQIIAVLIGGLSILAGQITAEQLTKFLLYSE 403
Query: 399 WLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFH 458
WLIYATW + DNLSSL+QS+GA+EKVFQ++DL PS+QF+S+G +LQRL GH++FV++SF
Sbjct: 404 WLIYATWWVGDNLSSLMQSVGASEKVFQMMDLKPSDQFISKGTRLQRLTGHIEFVDVSFS 463
Query: 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518
YPSR V ++ +V +++ EVVAIVGLSGSGKST VNLLL+LYEP+ GQI +DG PL +
Sbjct: 464 YPSREEVAVVQNVSMSVHPGEVVAIVGLSGSGKSTLVNLLLQLYEPTSGQILLDGVPLKE 523
Query: 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 578
LD++WLR++IG+VGQEP+L + DI SNI YGC +++ EDI AAKQAY HEFI +LP G
Sbjct: 524 LDVKWLRQRIGYVGQEPKLFRTDISSNIKYGCDRNISQEDIISAAKQAYAHEFITALPNG 583
Query: 579 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638
Y T+VDDDLLSGGQKQRIAIARAILRDP IL+LDEATSALD+ESEH VKGVL ++ ND
Sbjct: 584 YNTIVDDDLLSGGQKQRIAIARAILRDPRILILDEATSALDAESEHNVKGVLRSIGNDSA 643
Query: 639 TKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTESL 694
TKR+VIVIAHRLSTI+A DRIV +D GR++E+GNH ELL K LYA+L KRQ +++
Sbjct: 644 TKRSVIVIAHRLSTIQAADRIVAMDSGRVVEMGNHKELLSKDGLYARLSKRQADAV 699
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30698733|ref|NP_177218.3| ABC transporter B family member 26 [Arabidopsis thaliana] gi|75330788|sp|Q8RY46.1|AB26B_ARATH RecName: Full=ABC transporter B family member 26, chloroplastic; Short=ABC transporter ABCB.26; Short=AtABCB26; AltName: Full=Antigen peptide transporter-like 1; AltName: Full=Transporter associated with antigen processing-like protein 1; Short=AtTAP1; Flags: Precursor gi|19335722|gb|AAL85485.1| transporter associated with antigen processing-like protein [Arabidopsis thaliana] gi|110737412|dbj|BAF00650.1| transporter associated with antigen processing-like protein [Arabidopsis thaliana] gi|332196967|gb|AEE35088.1| ABC transporter B family member 26 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/656 (58%), Positives = 502/656 (76%), Gaps = 2/656 (0%)
Query: 39 FQIISNNKKFKRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWW 98
Q + N + ++ N A ++ DN+ + + + F+R + PGGSWW
Sbjct: 46 LQSSTRNYRLPSINCSTVNGAVAETAEYYEGEGDNV-SLAEKIRQCIDFLRTILPGGSWW 104
Query: 99 NLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEA 158
+ SD + AKP+TVW ALSRMW L+ D+W++ A ++LIVAA+SEIT+P L +
Sbjct: 105 SFSDEVDGRF-IAKPVTVWRALSRMWELVAEDRWVIFAAFSTLIVAALSEITIPHFLTAS 163
Query: 159 VFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQD 218
+FSAQ + VFH++ + LV LCVTSGI SG+R F IAN++LVKR+RETLYS LLFQD
Sbjct: 164 IFSAQSGDIAVFHRNVKLLVTLCVTSGICSGIRGCFFGIANMILVKRMRETLYSTLLFQD 223
Query: 219 VYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278
+ FFD++ VG LTSRL +DCQ++S VIGND+NMI RN LQG GA I LL LSWPL L L
Sbjct: 224 ISFFDSQTVGDLTSRLGSDCQQVSRVIGNDLNMIFRNVLQGTGALIYLLILSWPLGLCTL 283
Query: 279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKI 338
+IC L+ ++ VYG YQK+ + L QE A AN VAQET +MRTVRVYGTE++E RY
Sbjct: 284 VICCILAAVMFVYGMYQKKTAKLIQEITASANEVAQETYSLMRTVRVYGTEKQEFKRYNH 343
Query: 339 WLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCE 398
WL++LA I +R+S AYG+WN SF TLY +TQ++AVL+GG+SI+ GQ++ EQLTK++LY E
Sbjct: 344 WLQRLADISLRQSAAYGIWNWSFNTLYHATQIIAVLVGGLSILAGQITAEQLTKFLLYSE 403
Query: 399 WLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFH 458
WLIYATW + DNLSSL+QS+GA+EKVFQ++DL PS+QF+S+G +LQRL GH++FV++SF
Sbjct: 404 WLIYATWWVGDNLSSLMQSVGASEKVFQMMDLKPSDQFISKGTRLQRLTGHIEFVDVSFS 463
Query: 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518
YPSR V ++ +V +++ EVVAIVGLSGSGKST VNLLL+LYEP+ GQI +DG PL +
Sbjct: 464 YPSRDEVAVVQNVNISVHPGEVVAIVGLSGSGKSTLVNLLLQLYEPTSGQILLDGVPLKE 523
Query: 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 578
LD++WLR++IG+VGQEP+L + DI SNI YGC +++ EDI AAKQAY H+FI +LP G
Sbjct: 524 LDVKWLRQRIGYVGQEPKLFRTDISSNIKYGCDRNISQEDIISAAKQAYAHDFITALPNG 583
Query: 579 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638
Y T+VDDDLLSGGQKQRIAIARAILRDP IL+LDEATSALD+ESEH VKGVL ++ ND
Sbjct: 584 YNTIVDDDLLSGGQKQRIAIARAILRDPRILILDEATSALDAESEHNVKGVLRSIGNDSA 643
Query: 639 TKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTESL 694
TKR+VIVIAHRLSTI+A DRIV +D GR++E+G+H ELL K LYA+L KRQ +++
Sbjct: 644 TKRSVIVIAHRLSTIQAADRIVAMDSGRVVEMGSHKELLSKDGLYARLTKRQNDAV 699
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 695 | ||||||
| TAIR|locus:2026790 | 700 | ABCB26 "ATP-binding cassette B | 0.938 | 0.931 | 0.567 | 3.6e-199 | |
| UNIPROTKB|A8JBH0 | 560 | CHLREDRAFT_121501 "Predicted p | 0.670 | 0.832 | 0.412 | 3.4e-90 | |
| WB|WBGene00001812 | 761 | haf-2 [Caenorhabditis elegans | 0.723 | 0.660 | 0.374 | 2e-88 | |
| UNIPROTKB|O02086 | 761 | haf-2 "Protein HAF-2" [Caenorh | 0.723 | 0.660 | 0.374 | 2e-88 | |
| ZFIN|ZDB-GENE-050517-12 | 789 | abcb9 "ATP-binding cassette, s | 0.769 | 0.678 | 0.364 | 6.9e-86 | |
| UNIPROTKB|F1Q234 | 766 | ABCB9 "Uncharacterized protein | 0.766 | 0.695 | 0.361 | 8.2e-83 | |
| UNIPROTKB|Q6P2Q0 | 769 | ABCB9 "ATP-binding cassette su | 0.771 | 0.697 | 0.36 | 1.3e-82 | |
| UNIPROTKB|Q9NP78 | 766 | ABCB9 "ATP-binding cassette su | 0.766 | 0.695 | 0.361 | 1.7e-82 | |
| UNIPROTKB|F1NN89 | 609 | ABCB9 "Uncharacterized protein | 0.722 | 0.824 | 0.375 | 3.6e-82 | |
| UNIPROTKB|I3LED8 | 771 | ABCB9 "Uncharacterized protein | 0.753 | 0.679 | 0.358 | 4.5e-82 |
| TAIR|locus:2026790 ABCB26 "ATP-binding cassette B26" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1928 (683.7 bits), Expect = 3.6e-199, P = 3.6e-199
Identities = 372/656 (56%), Positives = 479/656 (73%)
Query: 40 QIISNNKKFKRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWWN 99
Q + N + ++ N A ++ DN+ + + + F+R + PGGSWW+
Sbjct: 47 QSSTRNYRLPSINCSTVNGAVAETAEYYEGEGDNV-SLAEKIRQCIDFLRTILPGGSWWS 105
Query: 100 LSDGQEAENPTAKPITVWIALSRMWNLIGRDKWXXXXXXXXXXXXXXXEITMPRILAEAV 159
SD + AKP+TVW ALSRMW L+ D+W EIT+P L ++
Sbjct: 106 FSDEVDGRF-IAKPVTVWRALSRMWELVAEDRWVIFAAFSTLIVAALSEITIPHFLTASI 164
Query: 160 FSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCF-SIANIVLVKRLRETLYSALLFQD 218
FSAQ + VFH++ + LV LCVTSGI SG+R GCF IAN++LVKR+RETLYS LLFQD
Sbjct: 165 FSAQSGDIAVFHRNVKLLVTLCVTSGICSGIR-GCFFGIANMILVKRMRETLYSTLLFQD 223
Query: 219 VYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278
+ FFD++ VG LTSRL +DCQ++S VIGND+NMI RN LQG GA I LL LSWPL L L
Sbjct: 224 ISFFDSQTVGDLTSRLGSDCQQVSRVIGNDLNMIFRNVLQGTGALIYLLILSWPLGLCTL 283
Query: 279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKI 338
+IC L+ ++ VYG YQK+ + L QE A AN VAQET +MRTVRVYGTE++E RY
Sbjct: 284 VICCILAAVMFVYGMYQKKTAKLIQEITASANEVAQETYSLMRTVRVYGTEKQEFKRYNH 343
Query: 339 WLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCE 398
WL++LA I +R+S AYG+WN SF TLY +TQ++AVL+GG+SI+ GQ++ EQLTK++LY E
Sbjct: 344 WLQRLADISLRQSAAYGIWNWSFNTLYHATQIIAVLVGGLSILAGQITAEQLTKFLLYSE 403
Query: 399 WLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFH 458
WLIYATW + DNLSSL+QS+GA+EKVFQ++DL PS+QF+S+G +LQRL GH++FV++SF
Sbjct: 404 WLIYATWWVGDNLSSLMQSVGASEKVFQMMDLKPSDQFISKGTRLQRLTGHIEFVDVSFS 463
Query: 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518
YPSR V ++ +V +++ EVVAIVGLSGSGKST VNLLL+LYEP+ GQI +DG PL +
Sbjct: 464 YPSRDEVAVVQNVNISVHPGEVVAIVGLSGSGKSTLVNLLLQLYEPTSGQILLDGVPLKE 523
Query: 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 578
LD++WLR++IG+VGQEP+L + DI SNI YGC +++ EDI AAKQAY H+FI +LP G
Sbjct: 524 LDVKWLRQRIGYVGQEPKLFRTDISSNIKYGCDRNISQEDIISAAKQAYAHDFITALPNG 583
Query: 579 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638
Y T+VDDDLLSGGQKQRIAIARAILRDP IL+LDEATSALD+ESEH VKGVL ++ ND
Sbjct: 584 YNTIVDDDLLSGGQKQRIAIARAILRDPRILILDEATSALDAESEHNVKGVLRSIGNDSA 643
Query: 639 TKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQTESL 694
TKR+VIVIAHRLSTI+A +H ELL K LYA+L KRQ +++
Sbjct: 644 TKRSVIVIAHRLSTIQAADRIVAMDSGRVVEMGSHKELLSKDGLYARLTKRQNDAV 699
|
|
| UNIPROTKB|A8JBH0 CHLREDRAFT_121501 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)] | Back alignment and assigned GO terms |
|---|
Score = 862 (308.5 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 195/473 (41%), Positives = 281/473 (59%)
Query: 221 FFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLI 280
FFD E VG LTSRL ADCQ ++ VI + N+ +RN LQ G + L LS L + I
Sbjct: 92 FFDGEDVGNLTSRLQADCQAMTKVIATNANIAVRNLLQAVGGIVYLYLLSPSLCGMTVAI 151
Query: 281 CSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWL 340
+ L + VYG + +R + Q+ A +N VA+E L + R VR +GTE E RY WL
Sbjct: 152 SAVLWAVTIVYGDFARRMQKIFQDVLAESNTVAEEALTLSRVVRTFGTEGTETKRYTTWL 211
Query: 341 EKLAFIRIRESMAYGLWNMS-FITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEW 399
+KL + R++ Y L+ S I Y S +V A+++G ++ G+++ EQLT +++Y E+
Sbjct: 212 DKLYEVGKRQAAGYSLFVASGHIACYAS-KVAALVVGCGMVLTGKLTAEQLTNFIMYVEF 270
Query: 400 LIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHY 459
+ YA+ + D + + +++GA+E+V ++ P+ Q ++ G+ G + ++ F Y
Sbjct: 271 VTYASLNVCDEFTEICEAVGASERVVAMLGAAPAPQ-IAAGIIPATFSGRMSLEDVKFSY 329
Query: 460 PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG-FPLTD 518
PSRP LN V L+ E ++ A+VGLSGSGK+T LL RLY+PS G++ +D + D
Sbjct: 330 PSRPGNMALNGVSLSFEPGKLTALVGLSGSGKTTVCALLQRLYDPSGGRLVLDADLDVRD 389
Query: 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE-DIEWAAKQAYVHEFILSLPC 577
D W R++IG V QEP+L I +NI YG + DIE AA+ A H+FI+SLP
Sbjct: 390 TDAAWYRQQIGVVPQEPRLFSRSIAANIAYGMEHAPPSAADIEEAARAANAHDFIMSLPQ 449
Query: 578 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 637
GYET V D LLSGGQKQR+A+ARA++R P +L+LDE +SALD+ESE V L R
Sbjct: 450 GYETQVTDKLLSGGQKQRLALARALIRKPKVLVLDEFSSALDAESEAQVHVALD--RAMS 507
Query: 638 KTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQ 690
RTVIVIAHRLST++ +H ELL + +Y +LV RQ
Sbjct: 508 ARDRTVIVIAHRLSTVRHADCIVVMDKGKVHEMGSHHELLARRGIYWQLVCRQ 560
|
|
| WB|WBGene00001812 haf-2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
Identities = 196/523 (37%), Positives = 306/523 (58%)
Query: 177 LVLLCVT--SGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRL 234
+VL C+T S +F GLR GCF A ++ R+R L+++L+ QD+ F+DT G SRL
Sbjct: 241 IVLTCLTATSSLFGGLRGGCFDYATALVTLRIRLDLFTSLIRQDIAFYDTAKTGDTMSRL 300
Query: 235 TADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQY 294
T+DCQ +S+ + ++N+ +RN + GA ++ +SW L + + + I Y +
Sbjct: 301 TSDCQTISSTVSTNVNVFMRNGVMLIGALAFMILMSWRLAMVTFIAVPLVGFITKAYSSF 360
Query: 295 QKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY 354
+ S Q+ A N +A+E + MRTVR + E+KEL R++ L + ++S+AY
Sbjct: 361 YDKISEKLQQTIAETNQMAEEVVSTMRTVRSFACEKKELKRFEDRLSSTLSVNRKKSIAY 420
Query: 355 GL--WNMSFITLYRSTQVMAVLL-GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNL 411
WN F + ++AVL GG +M G++ EQL ++LY L + + +
Sbjct: 421 LFYTWNNEFCD---NAILVAVLFYGGHLVMTGKMEKEQLITFLLYQMQLGENLYYLSYVM 477
Query: 412 SSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHV 471
S L++++GA+ KVF L++ P QF +G++ + G++ F ++ F YPSRP P+L +
Sbjct: 478 SGLMEAVGASRKVFDLMNRKP--QFELDGMQRPFVNGNITFSHVGFTYPSRPNNPVLKDL 535
Query: 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 531
L+I++ E VA+VG SG GKS+ V+L+ YEP +G + +DG P+ D++ + +K+ V
Sbjct: 536 TLSIKSGETVALVGPSGGGKSSIVSLIEHFYEPDEGSVTLDGVPIKDINHVYYHQKVALV 595
Query: 532 GQEPQLLQMDIKSNIMYGCPKDVKNED-IEWAAKQAYVHEFILSLPCGYETLVDDD--LL 588
QEP L ++ NI+YGC D ED + A+K A VH+F++ L GY+T + +
Sbjct: 596 AQEPVLYNGSVRHNILYGC--DFATEDDMLNASKMANVHDFVMELEKGYDTNCGEKGVQM 653
Query: 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 648
SGGQKQRIAIARA++R+PA+L+LDEATSALD+ESE V+ L + C +RTVI++AH
Sbjct: 654 SGGQKQRIAIARALVRNPAVLILDEATSALDTESEALVQQAL----SRCAQERTVIIVAH 709
Query: 649 RLSTIKAXXXXXXXXXXXXXXXXNHAELL-HKGRLYAKLVKRQ 690
RLSTI+ H EL+ +Y LV RQ
Sbjct: 710 RLSTIEKANKIAVIVKGCLVQMGTHTELMTDTDGMYYSLVSRQ 752
|
|
| UNIPROTKB|O02086 haf-2 "Protein HAF-2" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
Identities = 196/523 (37%), Positives = 306/523 (58%)
Query: 177 LVLLCVT--SGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRL 234
+VL C+T S +F GLR GCF A ++ R+R L+++L+ QD+ F+DT G SRL
Sbjct: 241 IVLTCLTATSSLFGGLRGGCFDYATALVTLRIRLDLFTSLIRQDIAFYDTAKTGDTMSRL 300
Query: 235 TADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQY 294
T+DCQ +S+ + ++N+ +RN + GA ++ +SW L + + + I Y +
Sbjct: 301 TSDCQTISSTVSTNVNVFMRNGVMLIGALAFMILMSWRLAMVTFIAVPLVGFITKAYSSF 360
Query: 295 QKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY 354
+ S Q+ A N +A+E + MRTVR + E+KEL R++ L + ++S+AY
Sbjct: 361 YDKISEKLQQTIAETNQMAEEVVSTMRTVRSFACEKKELKRFEDRLSSTLSVNRKKSIAY 420
Query: 355 GL--WNMSFITLYRSTQVMAVLL-GGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNL 411
WN F + ++AVL GG +M G++ EQL ++LY L + + +
Sbjct: 421 LFYTWNNEFCD---NAILVAVLFYGGHLVMTGKMEKEQLITFLLYQMQLGENLYYLSYVM 477
Query: 412 SSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHV 471
S L++++GA+ KVF L++ P QF +G++ + G++ F ++ F YPSRP P+L +
Sbjct: 478 SGLMEAVGASRKVFDLMNRKP--QFELDGMQRPFVNGNITFSHVGFTYPSRPNNPVLKDL 535
Query: 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 531
L+I++ E VA+VG SG GKS+ V+L+ YEP +G + +DG P+ D++ + +K+ V
Sbjct: 536 TLSIKSGETVALVGPSGGGKSSIVSLIEHFYEPDEGSVTLDGVPIKDINHVYYHQKVALV 595
Query: 532 GQEPQLLQMDIKSNIMYGCPKDVKNED-IEWAAKQAYVHEFILSLPCGYETLVDDD--LL 588
QEP L ++ NI+YGC D ED + A+K A VH+F++ L GY+T + +
Sbjct: 596 AQEPVLYNGSVRHNILYGC--DFATEDDMLNASKMANVHDFVMELEKGYDTNCGEKGVQM 653
Query: 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 648
SGGQKQRIAIARA++R+PA+L+LDEATSALD+ESE V+ L + C +RTVI++AH
Sbjct: 654 SGGQKQRIAIARALVRNPAVLILDEATSALDTESEALVQQAL----SRCAQERTVIIVAH 709
Query: 649 RLSTIKAXXXXXXXXXXXXXXXXNHAELL-HKGRLYAKLVKRQ 690
RLSTI+ H EL+ +Y LV RQ
Sbjct: 710 RLSTIEKANKIAVIVKGCLVQMGTHTELMTDTDGMYYSLVSRQ 752
|
|
| ZFIN|ZDB-GENE-050517-12 abcb9 "ATP-binding cassette, sub-family B (MDR/TAP), member 9" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
Identities = 200/548 (36%), Positives = 312/548 (56%)
Query: 148 EITMPRILAEAVFSAQREEAMV-FHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRL 206
E +P +A+ +++M F K L +L + S I G R G FS+ L RL
Sbjct: 209 EAFIPYYTGQAIDGIVIQKSMDHFAKPMITLSVLALVSSIAIGFRGGVFSVTFARLNIRL 268
Query: 207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL 266
R L+ +L+ Q++ FFD G +TSRLT+D ++S++I ++N+ LR+ ++ G FI +
Sbjct: 269 RNLLFRSLMHQEIGFFDANHTGDITSRLTSDTTQVSDLISQNVNLFLRSFVKAVGIFIFM 328
Query: 267 LTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVY 326
+SW L++ ++ +++++ +YG+Y K+ + Q A AN VA+ET+ MRTVR +
Sbjct: 329 FGMSWKLSVVTIMGFPYIAVVSKLYGEYYKKLTKEVQTALAQANKVAEETISAMRTVRSF 388
Query: 327 GTEEKELGRYKIWLEKLAFIRIRESMAYG--LWNMSFITLYRSTQVMAVLLGGMSIMIGQ 384
E++E Y L+++ + ++++AY +W+ S+I+ + QV + GG ++ Q
Sbjct: 389 ANEDQEGDMYYSRLQEMFVLNKKQAIAYACFMWS-SYISEL-ALQVAILFYGGHLVVTNQ 446
Query: 385 VSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ 444
+S L +V+Y L A + + L+Q +GA EKVF+ ID P + + +
Sbjct: 447 MSGGTLISFVIYELELGEALESISSVYTGLMQGVGAAEKVFEYIDRKPKHALNGQEAP-E 505
Query: 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504
L G V+F N++F YPSRP + +L +V ++ +V A+VG SG GKS+ V LL Y P
Sbjct: 506 TLEGQVEFNNVTFAYPSRPEMDVLKNVSFSLRPGQVTALVGPSGGGKSSCVCLLENFYAP 565
Query: 505 SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAK 564
GQ+ +DG P+ ++ K+ V QEP L ++ NI YG P + E + AA
Sbjct: 566 QQGQVLVDGRPVNTYQHKYYHSKVALVAQEPVLFARTVQMNISYGVP-EAPMEAVIRAAI 624
Query: 565 QAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622
A H+FI L GY++ V + LSGGQKQR+AIARA++R P IL+LDEATSALDSES
Sbjct: 625 NANAHDFITGLSKGYDSGVGEKGTQLSGGQKQRVAIARALIRSPRILILDEATSALDSES 684
Query: 623 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRL 682
E+ V+ L N+ + TV+VIAHRLST++ HAEL+ +G L
Sbjct: 685 EYIVQQAL----NNLMREHTVLVIAHRLSTVERADNILVIDKGSVVEQGPHAELMARGGL 740
Query: 683 YAKLVKRQ 690
Y KLV+RQ
Sbjct: 741 YCKLVQRQ 748
|
|
| UNIPROTKB|F1Q234 ABCB9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
Identities = 199/550 (36%), Positives = 313/550 (56%)
Query: 148 EITMPRILAEAVFSAQREEAMV-FHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRL 206
E +P A+ +++M F + + LL + S +G+R G F++ L RL
Sbjct: 202 ETFLPYYTGRAIDGIVIQKSMEQFSTAVIVMCLLAIGSSFAAGIRGGIFTLIFARLNIRL 261
Query: 207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL 266
R L+ +L+ Q++ FFD G L SRLT+D +S+++ +IN+ LRN+++ G + +
Sbjct: 262 RNRLFRSLVSQEMSFFDENRTGDLISRLTSDTTMVSDLVSQNINIFLRNTVKVTGVVVFM 321
Query: 267 LTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVY 326
+LSW L+L + + ++ +YG+Y KR S Q A A++ A+ET+ M+TVR +
Sbjct: 322 FSLSWQLSLVTFMGFPIIMMVSDIYGKYYKRLSKEVQNALARASSTAEETISAMKTVRSF 381
Query: 327 GTEEKELGRYKIWLEKLAFIRIRESMAYG--LWNMSFITLYRSTQVMAVLLGGMSIMIGQ 384
EE+E Y L+++ + +E+ AY +W S +TL QV + GG ++ GQ
Sbjct: 382 ANEEEEAEVYSRKLQQVYKLNRKEAAAYTYYVWG-SGLTLL-VVQVSILYYGGHLVISGQ 439
Query: 385 VSPEQLTKYVLYCEWLIYATWRMVDNL-SSLLQSIGATEKVFQLIDLLPSNQFLSEG-VK 442
++ L +++Y E+++ V ++ S L+Q +GA EKVF+ ID P+ + +G +
Sbjct: 440 MTSGNLISFIIY-EFVLGDCMESVGSVYSGLMQGVGAAEKVFEFIDRQPT--MVHDGNLA 496
Query: 443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502
+RL G V F N++F Y +RP +L +V ++ +V A+VG SGSGKS+ VN+L Y
Sbjct: 497 PERLEGRVDFENVTFTYRTRPHTQVLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFY 556
Query: 503 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA 562
G + +DG P++ D ++L I V QEP L I NI YG P V E + A
Sbjct: 557 PLEGGCVLLDGKPISAYDHKYLHRVISLVSQEPVLFARSITDNISYGLPT-VPFEMVVEA 615
Query: 563 AKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
A++A H FI+ L GY T + LSGGQKQR+A+ARA++R+P +L+LDEATSALD+
Sbjct: 616 AQKANAHGFIMELQDGYNTETGEKGAQLSGGQKQRVAMARALVRNPPVLILDEATSALDA 675
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKG 680
ESE+ ++ +H N K TV++IAHRLST++ H +LL +G
Sbjct: 676 ESEYLIQQAIHG--N--LQKHTVLIIAHRLSTVERAHLIVVLDKGRVVQQGTHQQLLAQG 731
Query: 681 RLYAKLVKRQ 690
LYAKLV+RQ
Sbjct: 732 GLYAKLVQRQ 741
|
|
| UNIPROTKB|Q6P2Q0 ABCB9 "ATP-binding cassette sub-family B member 9" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
Identities = 198/550 (36%), Positives = 312/550 (56%)
Query: 148 EITMPRILAEAVFSAQREEAM-VFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRL 206
E +P A+ +++M F + + LL + S +G+R G F++ L RL
Sbjct: 202 ETFLPYYTGRAIDGIVIQKSMDQFSTAVVIVCLLAIGSSFAAGIRGGIFTLIFARLNIRL 261
Query: 207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL 266
R L+ +L+ Q+ FFD G L SRLT+D +S+++ +IN+ LRN+++ G + +
Sbjct: 262 RNCLFRSLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINVFLRNTVKVTGVVVFM 321
Query: 267 LTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVY 326
+LSW L+L + + ++ ++YG+Y KR S Q A A+N A+ET+ M+TVR +
Sbjct: 322 FSLSWQLSLVTFMGFPIIMMVSNIYGKYYKRLSKEVQNALARASNTAEETISAMKTVRSF 381
Query: 327 GTEEKELGRYKIWLEKLAFIRIRESMAYG--LWNMSFITLYRSTQVMAVLLGGMSIMIGQ 384
EE+E Y L+++ + +E+ AY +W S +TL QV + GG ++ GQ
Sbjct: 382 ANEEEEAEVYLRKLQQVYKLNRKEAAAYMYYVWG-SGLTLL-VVQVSILYYGGHLVISGQ 439
Query: 385 VSPEQLTKYVLYCEWLIYATWRMVDNL-SSLLQSIGATEKVFQLIDLLPSNQFLSEG-VK 442
++ L +++Y E+++ V ++ S L+Q +GA EKVF+ ID P+ + +G +
Sbjct: 440 MTSGNLIAFIIY-EFVLGDCMESVGSVYSGLMQGVGAAEKVFEFIDRQPT--MVHDGSLA 496
Query: 443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502
L G V F N++F Y +RP +L +V ++ +V A+VG SGSGKS+ VN+L Y
Sbjct: 497 PDHLEGRVDFENVTFTYRTRPHTQVLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFY 556
Query: 503 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA 562
G++ +DG P++ D ++L I V QEP L I NI YG P V E + A
Sbjct: 557 PLEGGRVLLDGKPISAYDHKYLHRVISLVSQEPVLFARSITDNISYGLPT-VPFEMVVEA 615
Query: 563 AKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
A++A H FI+ L GY T + LSGGQKQR+A+ARA++R+P +L+LDEATSALD+
Sbjct: 616 AQKANAHGFIMELQDGYSTETGEKGAQLSGGQKQRVAMARALVRNPPVLILDEATSALDA 675
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKG 680
ESE+ + A+ + + K TV++IAHRLST++ H +LL +G
Sbjct: 676 ESEYLSPQIQQAIHGNLQ-KHTVLIIAHRLSTVEHAHLIVVLDKGRVVQQGTHQQLLAQG 734
Query: 681 RLYAKLVKRQ 690
LYAKLV+RQ
Sbjct: 735 GLYAKLVQRQ 744
|
|
| UNIPROTKB|Q9NP78 ABCB9 "ATP-binding cassette sub-family B member 9" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
Identities = 199/550 (36%), Positives = 312/550 (56%)
Query: 148 EITMPRILAEAVFSAQREEAM-VFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRL 206
E +P A+ +++M F + + LL + S +G+R G F++ L RL
Sbjct: 202 ETFLPYYTGRAIDGIVIQKSMDQFSTAVVIVCLLAIGSSFAAGIRGGIFTLIFARLNIRL 261
Query: 207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL 266
R L+ +L+ Q+ FFD G L SRLT+D +S+++ +IN+ LRN+++ G + +
Sbjct: 262 RNCLFRSLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINVFLRNTVKVTGVVVFM 321
Query: 267 LTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVY 326
+LSW L+L + + ++ ++YG+Y KR S Q A A+N A+ET+ M+TVR +
Sbjct: 322 FSLSWQLSLVTFMGFPIIMMVSNIYGKYYKRLSKEVQNALARASNTAEETISAMKTVRSF 381
Query: 327 GTEEKELGRYKIWLEKLAFIRIRESMAYG--LWNMSFITLYRSTQVMAVLLGGMSIMIGQ 384
EE+E Y L+++ + +E+ AY +W S +TL QV + GG ++ GQ
Sbjct: 382 ANEEEEAEVYLRKLQQVYKLNRKEAAAYMYYVWG-SGLTLL-VVQVSILYYGGHLVISGQ 439
Query: 385 VSPEQLTKYVLYCEWLIYATWRMVDNL-SSLLQSIGATEKVFQLIDLLPSNQFLSEG-VK 442
++ L +++Y E+++ V ++ S L+Q +GA EKVF+ ID P+ + +G +
Sbjct: 440 MTSGNLIAFIIY-EFVLGDCMESVGSVYSGLMQGVGAAEKVFEFIDRQPT--MVHDGSLA 496
Query: 443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502
L G V F N++F Y +RP +L +V ++ +V A+VG SGSGKS+ VN+L Y
Sbjct: 497 PDHLEGRVDFENVTFTYRTRPHTQVLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFY 556
Query: 503 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA 562
G++ +DG P++ D ++L I V QEP L I NI YG P V E + A
Sbjct: 557 PLEGGRVLLDGKPISAYDHKYLHRVISLVSQEPVLFARSITDNISYGLPT-VPFEMVVEA 615
Query: 563 AKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
A++A H FI+ L GY T + LSGGQKQR+A+ARA++R+P +L+LDEATSALD+
Sbjct: 616 AQKANAHGFIMELQDGYSTETGEKGAQLSGGQKQRVAMARALVRNPPVLILDEATSALDA 675
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKG 680
ESE+ ++ +H N K TV++IAHRLST++ H +LL +G
Sbjct: 676 ESEYLIQQAIHG--N--LQKHTVLIIAHRLSTVEHAHLIVVLDKGRVVQQGTHQQLLAQG 731
Query: 681 RLYAKLVKRQ 690
LYAKLV+RQ
Sbjct: 732 GLYAKLVQRQ 741
|
|
| UNIPROTKB|F1NN89 ABCB9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
Identities = 195/519 (37%), Positives = 297/519 (57%)
Query: 179 LLCVTSGIFS-GLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTAD 237
LL + F+ G+R G F++ L RLR L+ +L+ Q++ FFD G + SRLT+D
Sbjct: 73 LLAIAISSFAAGVRGGVFTLIFARLNIRLRNCLFRSLMSQEMSFFDENRTGDVISRLTSD 132
Query: 238 CQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKR 297
+S+++ +IN+ LRN ++ G + +LSW L+L + + ++ +YG+Y K+
Sbjct: 133 TTIVSDLVSQNINIFLRNVVKATGVIFFMFSLSWKLSLVTFMGFPIIMLVSDIYGKYYKK 192
Query: 298 ASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG-- 355
S Q A ANN A+ET+ M+TVR + EE E Y L+++ + RE++AY
Sbjct: 193 LSKDVQNALAKANNTAEETISAMKTVRSFANEEAEANVYWQKLQQVYRLNKREALAYTYY 252
Query: 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNL-SSL 414
+W+ S +TL QV + GG ++ GQ++ L +++Y E+++ V ++ S L
Sbjct: 253 VWS-SGLTLL-VVQVSILYYGGHLVISGQMTSGNLISFIIY-EFVLGDCMESVGSVYSGL 309
Query: 415 LQSIGATEKVFQLIDLLPSNQFLSEG-VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCL 473
+Q +GA EKVF+ ID P+ +++G + + G V+F N++F Y +R +L +V
Sbjct: 310 MQGVGAAEKVFEFIDRKPT--MVNDGSLAPDHVDGKVEFRNVTFSYRTRSATQVLQNVSF 367
Query: 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 533
T+ +V A+VG SGSGKS+ VN+L Y DGQ+ +DG P+ D ++L I V Q
Sbjct: 368 TLHPGKVTALVGPSGSGKSSCVNILENFYPLQDGQVLLDGHPINMYDHKYLHSVISLVSQ 427
Query: 534 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGG 591
EP L I NI YG E + AA++A H FI L GY T + LSGG
Sbjct: 428 EPVLFARSIADNISYGLAS-ASFESVVQAAQKANAHAFITELQDGYHTEAGEKGAQLSGG 486
Query: 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 651
QKQR+AIARA++R P IL+LDEATSALD+ESEH ++ A+ D + TV+VIAHRLS
Sbjct: 487 QKQRVAIARALIRTPPILILDEATSALDAESEHAIQ---QAIYGDLQN-HTVLVIAHRLS 542
Query: 652 TIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKLVKRQ 690
T++ +H EL+ +G LY+KLV+RQ
Sbjct: 543 TVEKAHNIIVLDKGRVVQQGSHKELMEEGGLYSKLVQRQ 581
|
|
| UNIPROTKB|I3LED8 ABCB9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
Identities = 195/544 (35%), Positives = 311/544 (57%)
Query: 160 FSAQREEAMVFHKS----SRFLVLLC---VTSGIFSGLRSGCFSIANIVLVKRLRETLYS 212
++ + + +V KS S ++++C + S +G+R G F++ L RLR L+
Sbjct: 210 YTGRAIDGIVIQKSMEQFSTAVIVMCALAIGSSFAAGIRGGIFTLIFARLNIRLRNRLFR 269
Query: 213 ALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP 272
+L+ Q+ FFD G L SRLT+D +S+++ +IN+ LRN+++ G + + +LSW
Sbjct: 270 SLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINIFLRNTVKVTGVVVFMFSLSWQ 329
Query: 273 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKE 332
L+L + + ++ +YG+Y KR S Q A A++ A+ET+ M+TVR + EE+E
Sbjct: 330 LSLVTFMGFPIIMMVSDIYGKYYKRLSKEVQNALARASSTAEETISAMKTVRSFANEEEE 389
Query: 333 LGRYKIWLEKLAFIRIRESMAYG--LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQL 390
Y L+++ + +E+ AY +W S +TL QV + GG ++ GQ++ L
Sbjct: 390 AEVYSRKLQQVYKLNRKEAAAYTYYVWG-SGLTLL-VVQVSILYYGGHLVISGQMTSGNL 447
Query: 391 TKYVLYCEWLIYATWRMVDNL-SSLLQSIGATEKVFQLIDLLPSNQFLSEG-VKLQRLMG 448
+++Y E+++ V ++ S L+Q +GA EKVF+ ID P+ + +G + L G
Sbjct: 448 ISFIIY-EFVLGDCMESVGSVYSGLMQGVGAAEKVFEFIDRQPT--MVHDGNLAPDHLEG 504
Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
V F N++F Y +RP +L +V ++ +V A+VG SGSGKS+ VN+L Y G+
Sbjct: 505 RVDFENVTFTYRTRPHTQVLQNVSFSLSPGKVTALVGPSGSGKSSCVNILENFYPLEGGR 564
Query: 509 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 568
+ +DG P++ D ++L I V QEP L I NI YG P V E + AA++A
Sbjct: 565 VLLDGKPISAYDHKYLHRAISLVSQEPVLFARSITDNISYGLPT-VPFEMVVEAAQKANA 623
Query: 569 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
H FI+ L GY T + LSGGQKQR+A+ARA++R+P +L+LDEATSALD+ESE+
Sbjct: 624 HGFIMELQDGYNTETGEKGAQLSGGQKQRVAMARALVRNPPVLILDEATSALDAESEYLK 683
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAXXXXXXXXXXXXXXXXNHAELLHKGRLYAKL 686
+ A+ + + K TV++IAHRLST++ H +LL +G LYAKL
Sbjct: 684 TRIQQAIHGNLQ-KHTVLIIAHRLSTVERAHLIVVLDKGRVVQQGTHQQLLAQGGLYAKL 742
Query: 687 VKRQ 690
V+RQ
Sbjct: 743 VQRQ 746
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8RY46 | AB26B_ARATH | No assigned EC number | 0.5884 | 0.9410 | 0.9342 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00009463001 | SubName- Full=Chromosome undetermined scaffold_235, whole genome shotgun sequence; (707 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 695 | |||
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-143 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-134 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-125 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-115 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-114 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-98 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-97 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 7e-93 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-89 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 6e-87 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-78 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 4e-78 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-75 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-74 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-73 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-72 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 9e-70 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-67 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-66 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 5e-65 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-64 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 8e-64 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-63 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 7e-58 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-56 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-54 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-52 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-52 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-51 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-50 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-49 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-47 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-47 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-47 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-46 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-46 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-46 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 8e-46 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-45 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-45 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-44 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 5e-44 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 9e-44 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-43 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-43 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-43 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-42 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-42 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 7e-42 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 6e-41 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-40 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-40 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 9e-40 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-39 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 7e-39 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-38 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-38 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-38 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 7e-38 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 7e-38 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-37 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-37 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 6e-37 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 7e-37 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-36 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-36 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 8e-36 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-35 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-35 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-35 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-35 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-35 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-34 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-34 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-34 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 6e-33 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 9e-33 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-32 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-32 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-32 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-32 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-32 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-32 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-32 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-32 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-32 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 4e-32 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-31 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-31 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-31 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 7e-31 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-30 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-30 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-30 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-30 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-30 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-30 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-30 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-30 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-30 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-30 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 7e-30 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-29 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-29 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-29 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 7e-29 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-28 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-28 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-28 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-28 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-28 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 9e-28 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-27 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-27 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-27 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-27 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-27 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-27 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-27 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-27 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-27 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-27 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 8e-27 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 8e-27 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-26 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-26 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-26 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-26 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-26 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-26 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-26 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 8e-26 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 8e-26 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-25 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-25 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-25 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-25 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-25 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-25 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-25 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 7e-25 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-24 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-24 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-24 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-24 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-24 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 5e-24 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 7e-24 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-23 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-23 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-23 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 5e-23 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-23 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-23 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 6e-23 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 7e-23 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 8e-23 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 9e-23 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-22 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-22 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-22 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-22 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-22 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-22 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-22 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-22 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 5e-22 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 8e-22 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 8e-22 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 9e-22 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 9e-22 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-21 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-21 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-21 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-21 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-21 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-21 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-21 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 4e-21 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-21 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 6e-21 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 6e-21 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 7e-21 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 7e-21 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 7e-21 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 9e-21 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-20 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-20 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-20 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-20 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-20 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 1e-20 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-20 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-20 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-20 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-20 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-20 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-20 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-20 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 5e-20 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 6e-20 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 6e-20 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-20 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 8e-20 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 8e-20 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 8e-20 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 9e-20 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 9e-20 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-19 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-19 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-19 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-19 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-19 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 3e-19 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-19 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-19 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 3e-19 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-19 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 4e-19 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 4e-19 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-19 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-19 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 4e-19 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 5e-19 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 6e-19 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 9e-19 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-18 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-18 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-18 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-18 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-18 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-18 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-18 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-18 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-18 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 4e-18 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 4e-18 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-18 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 7e-18 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 8e-18 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 9e-18 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-17 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-17 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-17 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-17 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-17 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-17 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-17 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-17 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-17 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-17 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 6e-17 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 6e-17 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-16 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-16 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-16 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-16 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-16 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-16 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-16 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 3e-16 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-16 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-16 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-16 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-16 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-16 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-16 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-16 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 5e-16 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 5e-16 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 6e-16 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 6e-16 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 8e-16 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-15 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-15 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-15 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 3e-15 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 6e-15 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 9e-15 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 9e-15 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-14 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-14 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-14 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-14 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-14 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-14 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 3e-14 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-14 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-14 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-13 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-13 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-13 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-13 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-13 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-13 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 6e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 6e-13 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 8e-13 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 9e-13 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-12 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-12 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-12 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-12 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 7e-12 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 8e-12 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 8e-12 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-11 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-11 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-11 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-11 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 5e-11 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 6e-11 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-10 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-10 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 2e-10 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-10 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-10 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-10 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-10 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-10 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 7e-10 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 8e-10 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 8e-10 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-09 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-09 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-09 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-09 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 4e-09 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 9e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-08 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 3e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-08 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-08 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 4e-08 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 4e-08 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 4e-08 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 7e-08 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 7e-08 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 8e-08 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 1e-07 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 1e-07 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-06 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-06 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-06 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 4e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 7e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 9e-06 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 9e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-05 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-05 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 5e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 8e-05 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 8e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-04 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 1e-04 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 2e-04 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 2e-04 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 2e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-04 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 5e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 6e-04 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 7e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.002 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.002 | |
| PRK00349 | 943 | PRK00349, uvrA, excinuclease ABC subunit A; Review | 0.002 | |
| cd03278 | 197 | cd03278, ABC_SMC_barmotin, ATP-binding cassette do | 0.002 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 434 bits (1118), Expect = e-143
Identities = 220/575 (38%), Positives = 332/575 (57%), Gaps = 19/575 (3%)
Query: 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPR---ILAEAVFSAQREEAMVFHKSSRF 176
L R+ L GRD ++ A L ++++ E+ +P + + + + A + F
Sbjct: 149 LFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPA--LASAIFF 206
Query: 177 LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTA 236
+ LL + S + +GLR G F+ + R+RE L+ +LL QD+ FFD G LTSRL++
Sbjct: 207 MCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSS 266
Query: 237 DCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQK 296
D Q +S + ++N++LRN + G +L LS LT+ L+ + + V+G+ +
Sbjct: 267 DTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQ 326
Query: 297 RASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG- 355
S QE A AN VA+E L MRTVR + EE E R+K LE+ + R+++AY
Sbjct: 327 LLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAG 386
Query: 356 -LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSL 414
LW S + + QV+ + GG ++ G+VS L ++LY E L A + S +
Sbjct: 387 YLWTTSVLGML--IQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGM 444
Query: 415 LQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLT 474
+Q++GA+EKVF+ +D P+ L+ + L G ++F ++SF YP+RP VP+L + T
Sbjct: 445 MQAVGASEKVFEYLDRKPNIP-LTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFT 503
Query: 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 534
+ EVVA+VG SGSGKST LL LY+P+ GQ+ +DG PL D +L ++ VGQE
Sbjct: 504 LHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQE 563
Query: 535 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592
P L ++ NI YG D +E+I AAK A H+FI+ P GY+T V + LSGGQ
Sbjct: 564 PVLFSGSVRENIAYGL-TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQ 622
Query: 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 652
KQRIAIARA++R P +L+LDEATSALD+E E +L R + RTV++IAHRLST
Sbjct: 623 KQRIAIARALVRKPRVLILDEATSALDAECEQ----LLQESR--SRASRTVLLIAHRLST 676
Query: 653 IKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 687
++ D+I+V+ G ++E+G H +L+ Y LV
Sbjct: 677 VERADQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 407 bits (1048), Expect = e-134
Identities = 207/578 (35%), Positives = 327/578 (56%), Gaps = 14/578 (2%)
Query: 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRF 176
L R+ + ++L+A+ L+++A+ + +P ++ + + + +
Sbjct: 1 LSLLRRLLKYLKY--KLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLL 58
Query: 177 LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTA 236
L+L + G+ L+S S +V LR L+ LL + FFD G L SRLT
Sbjct: 59 LLLALL-GGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTN 117
Query: 237 DCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQK 296
D + +SN++ + ++ + L G+ + L +LSW L L LLI L++++S+ + +
Sbjct: 118 DVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSR 177
Query: 297 RASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL 356
+ S +E N E+L +R ++ +G E++EL R++ E+L +R S L
Sbjct: 178 KLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEAL 237
Query: 357 WNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ 416
+ L V+ + LGG ++ G ++ L ++LY L+ ++ + +S L +
Sbjct: 238 LAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQR 297
Query: 417 SIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIE 476
+ A E++F+L+D + L+ +G ++F N+SF YP + P+L + +IE
Sbjct: 298 ASAAAERLFELLDE--EPEVEDPPDPLKDTIGSIEFENVSFSYPGKK--PVLKDISFSIE 353
Query: 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ 536
E VAIVG SGSGKST + LLLRLY+P+ G+I IDG + D+ + LR++IG V Q+P
Sbjct: 354 PGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPL 413
Query: 537 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQ 594
L I+ NI G P D +E+IE A K A HEFI +LP GY+T+V + LSGGQ+Q
Sbjct: 414 LFSGTIRENIALGRP-DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQ 472
Query: 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 654
R+AIARA+LR+P IL+LDEATSALD+E+E ++ L L RT ++IAHRLSTIK
Sbjct: 473 RLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKG----RTTLIIAHRLSTIK 528
Query: 655 AVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 692
DRI+V+D+GRI+E G H ELL KG LYA+L + Q
Sbjct: 529 NADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQGG 566
|
Length = 567 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 383 bits (985), Expect = e-125
Identities = 203/580 (35%), Positives = 321/580 (55%), Gaps = 15/580 (2%)
Query: 118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMP---RILAEAVFSAQREEAMVFHKSS 174
L+ +W + + VL A+ +L++ A + +++P R++ + FS + ++
Sbjct: 4 RPLAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLL--NRYF 61
Query: 175 RFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRL 234
FL+++ + + + R + +V +R +++ L+ FFD G + SRL
Sbjct: 62 AFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRL 121
Query: 235 TADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQY 294
T D L +VIG+ ++M LRN+L G I + S LT LL + + + ++G+
Sbjct: 122 TTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRR 181
Query: 295 QKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY 354
++ S +Q+ A A + A ETL +RTV+ +G E+ E R+ +EK A+ R+ +
Sbjct: 182 VRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEK-AYEAARQRIRT 240
Query: 355 GLWNMSF-ITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSS 413
+ I L V + +G ++ G++S L ++V Y + + + +
Sbjct: 241 RALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGE 300
Query: 414 LLQSIGATEKVFQLIDLLPSNQFLSEGVKL-QRLMGHVQFVNISFHYPSRPTVPILNHVC 472
L ++ GA E++ +L+ P + + L L G ++F ++F YP+RP P L+ +
Sbjct: 301 LQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLN 360
Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 532
LT+ E VA+VG SG+GKST LLLR Y+P G+I +DG L LD LR ++ V
Sbjct: 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVP 420
Query: 533 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSG 590
Q+P L + NI YG P D +E++E AA+ A+ HEFI +LP GY+T + + LSG
Sbjct: 421 QDPVLFAASVMENIRYGRP-DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSG 479
Query: 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 650
GQ+QRIAIARAIL+D ILLLDEATSALD+ESE V+ L L RT ++IAHRL
Sbjct: 480 GQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKG----RTTLIIAHRL 535
Query: 651 STIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 690
+T+ DRIVV+D GRI+ G HAEL+ KG LYA+L + Q
Sbjct: 536 ATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 357 bits (918), Expect = e-115
Identities = 197/576 (34%), Positives = 308/576 (53%), Gaps = 18/576 (3%)
Query: 122 RMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAV---FSAQREEAMVFHKSSRFLV 178
R+W+ + K +++A ++I+ A +E T+ +L + F + + + ++
Sbjct: 4 RLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWW--VPLVVI 61
Query: 179 LLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADC 238
L V GI S + + S + +V+ +R ++ LL V FFD + G L SR+T D
Sbjct: 62 GLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDS 121
Query: 239 QRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRA 298
+++++ + +++R +L G FI LL SW LTL +++ LSI++ + +R
Sbjct: 122 EQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRI 181
Query: 299 SVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 358
S Q VA+ETL R V+++G + E R+ + + ++ + A + +
Sbjct: 182 SKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSI-S 240
Query: 359 MSFITLYRSTQVMAVLLGGMSI-MIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQS 417
L S + VL + G ++ T ++ + + + N+++ +Q
Sbjct: 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFIT-AMIALIRPLKSLTNVNAPMQR 299
Query: 418 -IGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIE 476
+ A E +F L+D P + ++R G V+F N++F YP R P L+ + L IE
Sbjct: 300 GLAAAESLFTLLDSPPEKD--TGTRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIE 356
Query: 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ 536
E VA+VG SGSGKST VNL+ R YEP GQI +DG L D + LR ++ V Q+
Sbjct: 357 PGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVV 416
Query: 537 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQ 594
L I +NI YG + +IE A AY +F+ LP G +T + ++ LLSGGQ+Q
Sbjct: 417 LFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQ 476
Query: 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 654
R+AIARA+L+D IL+LDEATSALD+ESE V+ L L RT +VIAHRLSTI+
Sbjct: 477 RLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQG----RTTLVIAHRLSTIE 532
Query: 655 AVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 690
DRIVV+DDGRI+E G H ELL + LYA+L Q
Sbjct: 533 KADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 342 bits (879), Expect = e-114
Identities = 135/243 (55%), Positives = 172/243 (70%), Gaps = 7/243 (2%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++F N+SF YPSRP VPIL + LTI + VA+VG SG GKST V+LL R Y+P+ G+I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 569
+DG + DL++RWLR +IG V QEP L I NI YG P D +E++E AAK+A +H
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIH 119
Query: 570 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
+FI+SLP GY+TLV + LSGGQKQRIAIARA+LR+P ILLLDEATSALD+ESE V+
Sbjct: 120 DFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQ 179
Query: 628 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 687
L RT IVIAHRLSTI+ D I V+ +G+++E G H EL+ + +YAKLV
Sbjct: 180 EALDRAMKG----RTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235
Query: 688 KRQ 690
K Q
Sbjct: 236 KAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 301 bits (773), Expect = 3e-98
Identities = 123/239 (51%), Positives = 159/239 (66%), Gaps = 8/239 (3%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
V+F N++F YP P+L + L I A E VA+VG SGSGKST VNL+ R Y+ G+I
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 569
IDG + D + LR +IG V Q+ L + NI YG P E++E AA+ A H
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAH 118
Query: 570 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
EFI+ LP GY+T++ + LSGGQ+QRIAIARA+L+DP IL+LDEATSALD+ESE V+
Sbjct: 119 EFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQ 178
Query: 628 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 686
L L + RT VIAHRLSTI+ DRIVV++DG+I+E G H ELL +G +YAKL
Sbjct: 179 AALERLMKN----RTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 313 bits (805), Expect = 6e-97
Identities = 183/590 (31%), Positives = 296/590 (50%), Gaps = 40/590 (6%)
Query: 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPR----ILAEAVFSAQREEAMVFHKSSR 175
LS L+ + + ++ + + ++ + + P ++ + + A R V +
Sbjct: 142 LSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVL---AI 198
Query: 176 FLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVY-----FFDTEAVGGL 230
L+L + + LR+ L KRL S F+ + +F+ +VG +
Sbjct: 199 GLLLAALFEALLRLLRT----YLIAHLGKRLD-LELSGRFFRHLLRLPLSYFEKRSVGEI 253
Query: 231 TSRLTADCQRLSNVI----GNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSI 286
SR+ L + G+ + +I+ + L + SW LTL L +
Sbjct: 254 ISRVRE----LEQIREFLTGSILTLII-DLLFALIFLAVMFLYSWKLTLIVLAAIPLNVL 308
Query: 287 IVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLA-F 345
I ++ +R + E +A + ET+ + TV+ E + W +LA
Sbjct: 309 ITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPR---FRSQWDNRLAKQ 365
Query: 346 IRIRESMAY-GLWNMSFITLYRSTQVMAVL-LGGMSIMIGQVSPEQLTKYVLYCEWLIYA 403
+ I L + +L + + +L G + ++ G+++ QL + + + I
Sbjct: 366 VNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISP 425
Query: 404 TWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRP 463
R+ + Q+ A E++ ++D P + + L +L G ++F N+SF Y
Sbjct: 426 ITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDD 485
Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 523
P+L + L I E VAIVG SGSGKST + LLL LY+P G+I +DG L D+D+
Sbjct: 486 -PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLAS 544
Query: 524 LREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 583
LR ++G+V Q+P L I+ NI G P + +E+I AA+ A HEFI +LP GY+T V
Sbjct: 545 LRRQVGYVLQDPFLFSGSIRENIALGNP-EATDEEIIEAAQLAGAHEFIENLPMGYDTPV 603
Query: 584 DDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
+ LSGGQ+QR+A+ARA+L P ILLLDEATSALD E+E + L + R
Sbjct: 604 GEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL----QGR 659
Query: 642 TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 691
TVI+IAHRLSTI++ DRI+V+D G+I+E G+H ELL +G LYA+L ++Q
Sbjct: 660 TVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 299 bits (768), Expect = 7e-93
Identities = 200/611 (32%), Positives = 314/611 (51%), Gaps = 68/611 (11%)
Query: 112 KPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITM-----PRILAEAVFSAQREE 166
K ++ W R+W I K ++VA +LI+ A S+ M P +L + A R
Sbjct: 5 KDLSTWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKP-LLDDGFGKADRS- 62
Query: 167 AMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEA 226
V ++ L + GI S + S C S + +V +R L+ ++ V FFD ++
Sbjct: 63 --VLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQS 120
Query: 227 VGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSI 286
G L SR+T D +++++ + ++R G FI + SW L+L ++I +SI
Sbjct: 121 TGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSI 180
Query: 287 IVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLA-F 345
+ V + + S Q A++ L + V ++G +E E R+ +K++
Sbjct: 181 AIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRF----DKVSNR 236
Query: 346 IRIRESM----AYGLWN----------MSFITLYRST--QVMAVLLGG-----MSIMIGQ 384
+R ++ M A + + ++F+ LY ++ VM L G S MI
Sbjct: 237 MR-QQGMKMVSASSISDPIIQLIASLALAFV-LYAASFPSVMDTLTAGTITVVFSSMIAL 294
Query: 385 VSP-EQLTKYVLYCEWLIYATWRMVDNLSSLLQS-IGATEKVFQLIDLLPSNQFLSEGV- 441
+ P + LT N+++ Q + A + +F ++DL Q EG
Sbjct: 295 MRPLKSLT------------------NVNAQFQRGMAACQTLFAILDL---EQEKDEGKR 333
Query: 442 KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501
++R G ++F N++F YP + P L ++ I A + VA+VG SGSGKST NLL R
Sbjct: 334 VIERAKGDIEFRNVTFTYPGKEV-PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF 392
Query: 502 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEW 561
Y+ +G+I +DG L D + LR ++ V Q L I +NI Y + E IE
Sbjct: 393 YDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEE 452
Query: 562 AAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD 619
AA+ AY +FI + G +T++ ++ LLSGGQ+QRIAIARA+LRD IL+LDEATSALD
Sbjct: 453 AARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512
Query: 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 679
+ESE ++ L L+ + RT +VIAHRLSTI+ D I+V++DG I+E G HAELL +
Sbjct: 513 TESERAIQAALDELQKN----RTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ 568
Query: 680 GRLYAKLVKRQ 690
+YA+L K Q
Sbjct: 569 NGVYAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 278 bits (713), Expect = 2e-89
Identities = 123/243 (50%), Positives = 160/243 (65%), Gaps = 9/243 (3%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++F N++F Y P P+L V TI A + VAIVG SGSGKST + LL R Y+ S G I
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 569
IDG + ++ + LR IG V Q+ L I NI YG P D +E++ AAK A +H
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIH 117
Query: 570 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
+ I+ P GY+T+V + LSGG+KQR+AIARAIL++P ILLLDEATSALD+ +E +
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTE---R 174
Query: 628 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 687
+ ALR+ K RT IVIAHRLSTI D+I+V+ DGRI+E G H ELL KG LYA++
Sbjct: 175 EIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMW 233
Query: 688 KRQ 690
K Q
Sbjct: 234 KAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 272 bits (697), Expect = 6e-87
Identities = 109/235 (46%), Positives = 153/235 (65%), Gaps = 9/235 (3%)
Query: 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
G ++F N++F Y P+L + +I+ E VAIVG +G+GK+T +NLL+R Y+P G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 508 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAY 567
QI IDG + D+ + LR IG V Q+ L I NI G P + +E++ AAK+A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAG 117
Query: 568 VHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 625
H+FI+ LP GY+T++ + LS G++Q +AIARA+LRDP IL+LDEATS +D+E+E
Sbjct: 118 AHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKL 177
Query: 626 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 680
++ L L RT I+IAHRLSTIK D+I+V+DDG+IIE G H ELL K
Sbjct: 178 IQEALEKLMKG----RTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 247 bits (633), Expect = 2e-78
Identities = 106/217 (48%), Positives = 129/217 (59%), Gaps = 46/217 (21%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++F N+SF YP RP P+L V LTI+ E VAIVG SGSGKST + LLLRLY+P+ G+I
Sbjct: 1 IEFKNVSFSYPGRP-KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 569
IDG L DLD+ LR+ I +V Q+P L I+ NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 570 EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 629
LSGGQ+QRIAIARA+LRDP IL+LDEATSALD E+E +
Sbjct: 97 ------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA 138
Query: 630 LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666
L AL +TVIVIAHRLSTI+ DRI+V+DDGR
Sbjct: 139 LRALAKG----KTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 4e-78
Identities = 107/226 (47%), Positives = 146/226 (64%), Gaps = 7/226 (3%)
Query: 444 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503
L G V+F N++F YP+RP +L V T+ EV A+VG SGSGKST V LL Y+
Sbjct: 6 DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65
Query: 504 PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA 563
P GQ+ +DG P++ + ++L K+ VGQEP L ++ NI YG E ++ AA
Sbjct: 66 PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQ-SCSFECVKEAA 124
Query: 564 KQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
++A+ H FI L GY+T V + LSGGQKQR+AIARA++R+P +L+LDEATSALD+E
Sbjct: 125 QKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184
Query: 622 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 667
SE V D +RTV+VIAHRLST++ D+I+V+D GRI
Sbjct: 185 SEQQV----QQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 252 bits (646), Expect = 5e-75
Identities = 121/324 (37%), Positives = 193/324 (59%), Gaps = 10/324 (3%)
Query: 370 VMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLI 428
++A+L+ G +++ GQ+ ++ +V + LI ++V ++ + + E+ F++
Sbjct: 254 MLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVE 313
Query: 429 DLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSG 488
D +P + + L R+ G V+F ++SF Y + + V + + VAIVG +G
Sbjct: 314 DAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSR--QGVEDVSFEAKPGQTVAIVGPTG 371
Query: 489 SGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 548
+GKST +NLL R+++P G+I IDG + + LR I V Q+ L I+ NI
Sbjct: 372 AGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRV 431
Query: 549 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP 606
G P D +E++ AA++A H+FI P GY+T+V + LSGG++QR+AIARA+L+DP
Sbjct: 432 GRP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490
Query: 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666
IL+LDEATSALD E+E VK L L RT +IAHRLST++ DRI+V D+GR
Sbjct: 491 PILILDEATSALDVETEAKVKAALDELMKG----RTTFIIAHRLSTVRNADRILVFDNGR 546
Query: 667 IIEVGNHAELLHKGRLYAKLVKRQ 690
++E G+ EL+ +G +A L++ Q
Sbjct: 547 VVESGSFDELVARGGRFAALLRAQ 570
|
Length = 588 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 253 bits (649), Expect = 1e-74
Identities = 174/529 (32%), Positives = 269/529 (50%), Gaps = 32/529 (6%)
Query: 177 LVLLCVTSGIFSGLRSGCFS-IANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLT 235
++ + + GLR+ F+ + + + V+ L LY LL + +F++ VG +R+
Sbjct: 185 MLAVAIFEPALGGLRTYLFAHLTSRIDVE-LGARLYRHLLGLPLGYFESRRVGDTVARVR 243
Query: 236 ADCQRLSNVIGNDINMILRNSLQGAGAFINLL-----TLSWPLTLSALLICSFLSIIVSV 290
Q + + G+ + ++L L F+ ++ TL+ + + +L+ + LS+ V
Sbjct: 244 ELEQIRNFLTGSALTVVL--DLLFVVVFLAVMFFYSPTLTG-VVIGSLVCYALLSVFVG- 299
Query: 291 YGQYQKRASVLTQ-ECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLA--FIR 347
+KR V + E +A A + E++ + T++ TE + R W +LA
Sbjct: 300 -PILRKR--VEDKFERSAAATSFLVESVTGIETIKATATEPQFQNR---WDRQLAAYVAA 353
Query: 348 IRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWR 406
G I L + +L G ++I G +SP QL + + + R
Sbjct: 354 SFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLR 413
Query: 407 MVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHY-PSRPTV 465
+ Q+ A E++ +++ P+ + L L G + F NI F Y P P
Sbjct: 414 LAQLWQDFQQTGIALERLGDILNS-PTEPRSAGLAALPELRGAITFENIRFRYAPDSP-- 470
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525
+L+++ L I+ E + IVG SGSGKST LL RLY P GQ+ +DG L D WLR
Sbjct: 471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLR 530
Query: 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 585
++G V QE L I+ NI P E + AAK A H+FI LP GY T V +
Sbjct: 531 RQMGVVLQENVLFSRSIRDNIALCNPG-APFEHVIHAAKLAGAHDFISELPQGYNTEVGE 589
Query: 586 D--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV 643
LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESE + + + C+ RTV
Sbjct: 590 KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREI---CRG-RTV 645
Query: 644 IVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 692
I+IAHRLST++A DRI+V++ G+I E G H ELL LYA+L ++Q+
Sbjct: 646 IIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQQSG 694
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 237 bits (607), Expect = 1e-73
Identities = 117/244 (47%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 450 VQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
+ F ++ F Y +P P IL+++ L I+ EVV IVG SGSGKST L+ R Y P +G+
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 509 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 568
+ +DG L D WLR ++G V QE L I+ NI P + E + AAK A
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPG-MSMERVIEAAKLAGA 117
Query: 569 HEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
H+FI LP GY+T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 118 HDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAI 177
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 686
+H + C RTVI+IAHRLST+K DRI+V++ GRI+E G+H ELL + LYA L
Sbjct: 178 MRNMHDI---CA-GRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233
Query: 687 VKRQ 690
+ Q
Sbjct: 234 YQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 243 bits (622), Expect = 1e-72
Identities = 153/427 (35%), Positives = 224/427 (52%), Gaps = 35/427 (8%)
Query: 274 TLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKEL 333
TL +++ ++IVS + +R ++ AN A ++L TV+ +G EE E
Sbjct: 89 TLVTVILYLLFTVIVSDWRTDFRRLMN---NADSDANAKAIDSLLNFETVKYFGNEEYEA 145
Query: 334 GRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKY 393
RY LE I+ ++ + N ++ + + + + + + GQ++ L
Sbjct: 146 VRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNV 205
Query: 394 VLYCEWLIYATWRMVDNLSSLLQSIG-ATEKVFQLI-------DLLPSNQFLSEGVKLQR 445
+ LS L +G + ++ Q + DLL +S+
Sbjct: 206 NAL-----------LFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPP 254
Query: 446 LM----GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501
L G V F+N+SF Y R PILN + TI + VAIVG SG+GKST + LL R
Sbjct: 255 LWPVRLGAVAFINVSFAYDPRR--PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRF 312
Query: 502 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEW 561
Y+ + G I IDG + D+ + LR IG V Q+ L I NI YG P D E++
Sbjct: 313 YDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP-DATAEEVGA 371
Query: 562 AAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD 619
AA+ A +H+FI SLP GY+T V + LSGG+KQR+AIAR IL++P IL+LDEATSALD
Sbjct: 372 AAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALD 431
Query: 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 679
+ +E ++ L + RT +VIAHRLSTI D I+V+D+GRI+E G H ELL
Sbjct: 432 THTEQAIQAALREVSAG----RTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA 487
Query: 680 GRLYAKL 686
G LYA++
Sbjct: 488 GGLYAEM 494
|
Length = 497 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 226 bits (579), Expect = 9e-70
Identities = 99/223 (44%), Positives = 137/223 (61%), Gaps = 8/223 (3%)
Query: 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
G ++F N+SF YP++ P L++V LTI A E VAI+G GSGKST + LL LY+P+ G
Sbjct: 1 GRIEFRNVSFSYPNQEI-PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 508 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAY 567
+ +DG + LD LR IG+V Q+ L ++ NI G P +E I AA+ A
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAG 118
Query: 568 VHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 625
V +F+ P G + + + LSGGQ+Q +A+ARA+L DP ILLLDE TSA+D SE
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 626 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 668
+K L L D +T+I+I HR S + VDRI+V+D GRI+
Sbjct: 179 LKERLRQLLGD----KTLIIITHRPSLLDLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 234 bits (600), Expect = 1e-67
Identities = 181/607 (29%), Positives = 268/607 (44%), Gaps = 68/607 (11%)
Query: 112 KPITVWIALSRMWNLIGRD-KWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVF 170
K + + L RD I+ + + ++ + I ++ A+ A R +
Sbjct: 119 KALGLRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQI 178
Query: 171 HKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSA---------LLFQDVYF 221
L LL G + F +A + V RL ET A LL V F
Sbjct: 179 -----ALALLAAAVG------AAAFQLAQSLAVLRL-ETRMDASLQAAVWDRLLRLPVSF 226
Query: 222 FDTEAVGGLTSRLTADCQ---RLSNVIGNDINMILRNSLQGAGAFINLLTL---SWPLTL 275
F + G L SR Q LS L L G A +NL + SW L L
Sbjct: 227 FRQYSTGDLASRAMGISQIRRILSGST-------LTTLLSGIFALLNLGLMFYYSWKLAL 279
Query: 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGR 335
A+ + + V G Q R E + + + + + + +RV G E + R
Sbjct: 280 VAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFAR 339
Query: 336 Y------KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQV--SP 387
+ + LE L+ RI + F + A L ++G S
Sbjct: 340 WAKLFSRQRKLE-LSAQRIENLLT------VFNAVL-PVLTSAALFAAAISLLGGAGLSL 391
Query: 388 EQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLM 447
+ A ++ + L S+L I E+ +++ LP +L
Sbjct: 392 GSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVD--EAKTDPGKLS 449
Query: 448 GHVQFVNISFHY-PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
G ++ ++F Y P P IL+ V L IE E VAIVG SGSGKST + LLL P
Sbjct: 450 GAIEVDRVTFRYRPDGP--LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES 507
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEW-AAKQ 565
G ++ DG L LD++ +R ++G V Q +L+ I NI G P + D W AA+
Sbjct: 508 GSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTL---DEAWEAARM 564
Query: 566 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
A + E I ++P G T++ + LSGGQ+QR+ IARA++R P ILL DEATSALD+ ++
Sbjct: 565 AGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQ 624
Query: 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLY 683
V L L K T IVIAHRLSTI+ DRI V+D GR+++ G + EL+ + L+
Sbjct: 625 AIVSESLERL------KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLF 678
Query: 684 AKLVKRQ 690
A+L +RQ
Sbjct: 679 AQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 228 bits (582), Expect = 4e-66
Identities = 167/490 (34%), Positives = 251/490 (51%), Gaps = 33/490 (6%)
Query: 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSL-QGA 260
L LRE Y L Q F+ G L +R T D R+ G + + L +SL G
Sbjct: 67 LAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGV-LTLVDSLVMGC 125
Query: 261 GAFINLLT-LSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCM 319
I + T +SW LTL ALL ++I++ YG L Q + N+ QE+L
Sbjct: 126 AVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTS 185
Query: 320 MRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSF-ITLYRSTQVMAVLL--G 376
+R ++ +G E+++ + A +++M + F T+Y + MA LL G
Sbjct: 186 IRMIKAFGLEDRQSALF----AADAEDTGKKNMRVARIDARFDPTIYIAIG-MANLLAIG 240
Query: 377 GMSIMI--GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSI----GATEKVFQLIDL 430
G S M+ G ++ QLT +V+Y +I W M+ L+ + + A ++ ++
Sbjct: 241 GGSWMVVNGSLTLGQLTSFVMYLGLMI---WPML-ALAWMFNIVERGSAAYSRIRAMLAE 296
Query: 431 LPSNQFLSEGVKLQRLMGHVQFVNI-SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGS 489
P + SE V R G + VNI F YP P L +V T++ +++ I G +GS
Sbjct: 297 APVVKDGSEPVPEGR--GELD-VNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGS 352
Query: 490 GKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 549
GKST ++L+ R ++ S+G I PLT L + R ++ V Q P L + +NI G
Sbjct: 353 GKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALG 412
Query: 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPA 607
P D ++IE A+ A VH+ IL LP GY+T V + +LSGGQKQRI+IARA+L +
Sbjct: 413 RP-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE 471
Query: 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 667
IL+LD+A SA+D +EH +LH LR RTVI+ AHRLS + I+V+ G I
Sbjct: 472 ILILDDALSAVDGRTEHQ---ILHNLRQ-WGEGRTVIISAHRLSALTEASEILVMQHGHI 527
Query: 668 IEVGNHAELL 677
+ GNH +L
Sbjct: 528 AQRGNHDQLA 537
|
Length = 569 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 213 bits (546), Expect = 5e-65
Identities = 88/229 (38%), Positives = 138/229 (60%), Gaps = 13/229 (5%)
Query: 448 GHVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
G ++F N+S Y RP P+L ++ +I+ E V IVG +GSGKS+ + L RL E S
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA-KQ 565
G I IDG ++ + + LR +I + Q+P L I+SN+ P +++ W A ++
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL---DPFGEYSDEELWQALER 115
Query: 566 AYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
+ EF+ SLP G +T+V++ LS GQ+Q + +ARA+LR IL+LDEAT+++D E++
Sbjct: 116 VGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175
Query: 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 672
++ + DC TV+ IAHRL TI DRI+V+D GR++E +
Sbjct: 176 ALIQKTIREAFKDC----TVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 225 bits (576), Expect = 4e-64
Identities = 102/241 (42%), Positives = 148/241 (61%), Gaps = 8/241 (3%)
Query: 441 VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500
+ RL G ++F N+SF YP + T P L++V LTI E VAI+G GSGKST + LLL
Sbjct: 455 LHRPRLQGEIEFRNVSFAYPGQET-PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG 513
Query: 501 LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIE 560
LY+P++G + +DG + +D LR IG+V Q+P+L ++ NI G P +E+I
Sbjct: 514 LYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP-YADDEEIL 572
Query: 561 WAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSAL 618
AA+ A V EF+ P G + + + LSGGQ+Q +A+ARA+LRDP ILLLDE TSA+
Sbjct: 573 RAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAM 632
Query: 619 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 678
D+ SE K L +T++++ HR S + VDRI+V+D+GRI+ G ++L
Sbjct: 633 DNRSEERFKDRLKRWLAG----KTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688
Query: 679 K 679
Sbjct: 689 A 689
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 221 bits (565), Expect = 8e-64
Identities = 106/281 (37%), Positives = 157/281 (55%), Gaps = 11/281 (3%)
Query: 415 LQSIGATEKVFQLIDL-LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCL 473
A +K+F L++ + + + + N+SF YP L+ + L
Sbjct: 285 AAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPA--LSDLNL 342
Query: 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 533
TI+A ++ A+VG SG+GKST +NLLL P+ G+I ++G L DL R++I +V Q
Sbjct: 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402
Query: 534 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGG 591
P L I+ NI+ P D +E+I A QA + EF+ P G +T++ + LSGG
Sbjct: 403 NPYLFAGTIRENILLARP-DASDEEIIAALDQAGLLEFV-PKPDGLDTVIGEGGAGLSGG 460
Query: 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 651
Q QR+A+ARA+L ++LLLDE T+ LD+E+E + L L +TV+VI HRL
Sbjct: 461 QAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ----KTVLVITHRLE 516
Query: 652 TIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 692
DRIVV+D+GR++E G H EL K LYA L+K+Q
Sbjct: 517 DAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557
|
Length = 559 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 222 bits (569), Expect = 4e-63
Identities = 144/493 (29%), Positives = 234/493 (47%), Gaps = 47/493 (9%)
Query: 219 VYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278
V FF G + SR+ + +++ + + +++ + +L LTL
Sbjct: 242 VRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTL--- 297
Query: 279 LICSFLSIIVSVYGQYQKRASV-----LTQECNAHANNVAQETLCMMRTVRVYGTEEKEL 333
I + I + Q R V L Q+ VA L + T++ G E
Sbjct: 298 -IGIAFAAINVLALQLVSRRRVDANRRLQQD-AGKLTGVAISGLQSIETLKASGLESDFF 355
Query: 334 GRYKIWLEKLAFIRIRESMAYGLWNM---SFITLYRSTQVMAVL-LGGMSIMIGQVSPEQ 389
R+ + KL + G+ TL S +L +GG+ +M GQ++
Sbjct: 356 SRWAGYQAKL----LNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGM 411
Query: 390 LTKYVLYCEWLIYATWRMVDNLSSLLQSI-GATEKVFQLIDLL---PSNQFLSEGVK--- 442
L + L+ + V+NL ++ + +L D+L E
Sbjct: 412 LVAFQS----LMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAG 467
Query: 443 ---LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499
RL G+V+ NI+F Y S P++ + LT++ + VA+VG SGSGKST L+
Sbjct: 468 SEPSPRLSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVA 526
Query: 500 RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 559
LY+P G+I DG P ++ L + V Q+ L + ++ N+ P + + D+
Sbjct: 527 GLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPT-IPDADL 585
Query: 560 EWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSA 617
A K A +H+ I S P GY+ + + LSGGQ+QR+ IARA++R+P+IL+LDEATSA
Sbjct: 586 VRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSA 645
Query: 618 LDSESEHYVKGVLHALRNDCKTKR--TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 675
LD E+E K + LR +R T I++AHRLSTI+ D I+V++ G++++ G H E
Sbjct: 646 LDPETE---KIIDDNLR-----RRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEE 697
Query: 676 LLHKGRLYAKLVK 688
L G YA+L++
Sbjct: 698 LWAVGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 7e-58
Identities = 119/323 (36%), Positives = 193/323 (59%), Gaps = 10/323 (3%)
Query: 370 VMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLI 428
+M +L+ G ++I G++S ++ ++ + LI +M ++ + ++ E F L
Sbjct: 254 MMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLE 313
Query: 429 DLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSG 488
D + + ++ +L + G V+F +I+F + + + + V +A + VAIVG +G
Sbjct: 314 DSVFQREEPADAPELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTG 371
Query: 489 SGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 548
+GK+T +NLL R+Y+P+ GQI IDG + + LR+ I V Q+ L I+ NI
Sbjct: 372 AGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRL 431
Query: 549 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP 606
G + +E++ AAK A H+FIL GY+TLV + + LSGG++QR+AIARAIL++
Sbjct: 432 G-REGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNA 490
Query: 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666
IL+LDEATSALD E+E VK + ALR + RT +IAHRLST++ D ++ +D GR
Sbjct: 491 PILVLDEATSALDVETEARVKNAIDALRKN----RTTFIIAHRLSTVRNADLVLFLDQGR 546
Query: 667 IIEVGNHAELLHKGRLYAKLVKR 689
+IE G+ EL+ K + KL++R
Sbjct: 547 LIEKGSFQELIQKDGRFYKLLRR 569
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 4e-56
Identities = 129/472 (27%), Positives = 214/472 (45%), Gaps = 24/472 (5%)
Query: 228 GGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSII 287
G L +RL AD L N+ I + + A I L S PL L LI L +I
Sbjct: 115 GDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLI 174
Query: 288 VSV--YGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAF 345
+ Y +K + L Q A + + + + ++G E+ +
Sbjct: 175 IPTLFYRAGRKFGAHLAQGRAALRSQFT-DWVQGQAELLIFGAEDAYRTALEATEASWLK 233
Query: 346 IRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIY--- 402
+ +++ GL + + + +++G + M QV L + L+
Sbjct: 234 AQRKQARFTGLSDAILLLIA-----GLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAA 288
Query: 403 ---ATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHY 459
L Q I + ++ ++D P F E + ++ N+SF Y
Sbjct: 289 LEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDE--QTATTGQALELRNVSFTY 346
Query: 460 PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519
P + T L + LT+ E VAI+G SGSGKST + LL ++P G I ++G + L
Sbjct: 347 PGQQT-KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL 405
Query: 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 579
D + LRE I + Q L ++ N+ P D +E++ A +Q + + + S P G
Sbjct: 406 DEQALRETISVLTQRVHLFSGTLRDNLRLANP-DASDEELWAALQQVGLEKLLESAPDGL 464
Query: 580 ETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 637
T + + LSGG+++R+A+ARA+L D + LLDE T LD +E V +L
Sbjct: 465 NTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEG- 523
Query: 638 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 689
+T++++ HRL ++ +DRI+V+D+G+IIE G HAELL Y +L +
Sbjct: 524 ---KTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQL 572
|
Length = 573 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 5e-54
Identities = 91/215 (42%), Positives = 127/215 (59%), Gaps = 9/215 (4%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++F +S YP R P L V T+ E VA+VG SG+GKST +NLLL +P++G I
Sbjct: 322 LEFSGVSVAYPGRR--PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 569
++G PL D D R++I +V Q P L I NI P D + +I A ++A +
Sbjct: 380 AVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARP-DASDAEIREALERAGLD 438
Query: 570 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
EF+ +LP G +T + + LSGGQ QR+A+ARA LRD +LLLDE T+ LD+E+E V
Sbjct: 439 EFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVL 498
Query: 628 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662
L AL RTV+++ HRL+ DRIVV+
Sbjct: 499 EALRALAQG----RTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 190 bits (486), Expect = 1e-52
Identities = 97/289 (33%), Positives = 149/289 (51%), Gaps = 30/289 (10%)
Query: 414 LLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCL 473
L Q I + ++ ++ + P F + + N+SF YP +P P+L + L
Sbjct: 304 LGQVIASARRINEITEQKPEVTFPTTS-TAAADQVSLTLNNVSFTYPDQPQ-PVLKGLSL 361
Query: 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 533
I+A E VA++G +G GKST + LL R ++P G+I ++G P+ D LR+ I V Q
Sbjct: 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQ 421
Query: 534 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD------- 586
L ++ N++ P IE +Q G E L++DD
Sbjct: 422 RVHLFSATLRDNLLLAAPNASDEALIE-VLQQV-----------GLEKLLEDDKGLNAWL 469
Query: 587 -----LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
LSGG+++R+ IARA+L D +LLLDE T LD+E+E +L L + K
Sbjct: 470 GEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQ---ILELLAEHAQNK- 525
Query: 642 TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 690
TV++I HRL+ ++ DRI V+D+G+IIE G H ELL + Y +L +R
Sbjct: 526 TVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQRL 574
|
Length = 574 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 190 bits (486), Expect = 2e-52
Identities = 84/224 (37%), Positives = 138/224 (61%), Gaps = 8/224 (3%)
Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 532
T+ A + +A+VG SG+GK++ +N LL + P G + I+G L +LD R+ + +VG
Sbjct: 371 FTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRELDPESWRKHLSWVG 429
Query: 533 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSG 590
Q PQL ++ N++ G P D +E ++ A + A+V EF+ LP G +T + D LS
Sbjct: 430 QNPQLPHGTLRDNVLLGNP-DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSV 488
Query: 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 650
GQ QR+A+ARA+L+ +LLLDE T++LD+ SE V+ AL N ++T +++ H+L
Sbjct: 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQL---VMQAL-NAASRRQTTLMVTHQL 544
Query: 651 STIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTESL 694
+ D+I V+ DG+I++ G++AEL G L+A L+ + E +
Sbjct: 545 EDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQEEI 588
|
Length = 588 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 2e-51
Identities = 136/481 (28%), Positives = 237/481 (49%), Gaps = 34/481 (7%)
Query: 221 FFDTEAVGGLTSRLTADCQRLSNVIGN-------DINMILRNSLQGAGAFINLLTLSWPL 273
FF T G + SR T D + + + + D+ +++ L L+ + L
Sbjct: 246 FFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLF-------LVRQNMLL 297
Query: 274 TLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEE--- 330
L +LL ++I+ ++ + + + + NA N+ E L + T++ +E
Sbjct: 298 FLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERY 357
Query: 331 -KELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQ 389
K + +L K + + + ++ + L V+ + G +M G+++ Q
Sbjct: 358 SKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLIL----NVVILWTGAYLVMRGKLTLGQ 413
Query: 390 LTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS-EGVKLQRLMG 448
L + + + ++ NL LQ+ + L+ S + +L L G
Sbjct: 414 LITFNALLSYFLTPLENII-NLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNG 472
Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
+ ++S+ Y IL+ + LTI+ N IVG+SGSGKST LL+ ++ G+
Sbjct: 473 DIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530
Query: 509 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 568
I ++GF L D+D LR+ I ++ QEP + I N++ G ++V ++I A + A +
Sbjct: 531 ILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEI 590
Query: 569 HEFILSLPCGYET--LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
+ I ++P GY+T + +SGGQKQRIA+ARA+L D +L+LDE+TS LD+ +E +
Sbjct: 591 KDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKI 650
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 686
L L +T+I +AHRLS K D+I+V+D G+IIE G+H ELL + YA L
Sbjct: 651 VNNLLNL-----QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASL 705
Query: 687 V 687
+
Sbjct: 706 I 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 2e-50
Identities = 82/226 (36%), Positives = 121/226 (53%), Gaps = 25/226 (11%)
Query: 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510
+ N+SF YP P L+ + LTI+ E V IVG +GSGKST + LL L P+ G++
Sbjct: 1 ELKNLSFSYPDGAR-PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 511 IDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGC-----PKDVKNEDIEWAA 563
+DG LT L ++ LR K+G V Q P Q ++ + +G P++ E +E A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 564 KQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
+ G E L D LSGGQKQR+AIA + DP ILLLDE T+ LD
Sbjct: 120 EL-----------VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 622 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGR 666
+ +L L+ + K T+I++ H L + + DR++V++DG+
Sbjct: 169 GRRELLELLKKLKAEGK---TIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 2e-49
Identities = 102/275 (37%), Positives = 162/275 (58%), Gaps = 14/275 (5%)
Query: 412 SSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHV 471
S L Q++ A E+VF+L+D P Q+ ++ LQ G + N+SF Y R +L ++
Sbjct: 306 SMLQQAVVAGERVFELMDG-PRQQYGNDDRPLQS--GRIDIDNVSFAY--RDDNLVLQNI 360
Query: 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 531
L++ + VA+VG +GSGKST +LL+ Y ++G+I +DG PL+ L LR+ + V
Sbjct: 361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420
Query: 532 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLS 589
Q+P +L +N+ G +D+ E + A + + E SLP G T + + + LS
Sbjct: 421 QQDPVVLADTFLANVTLG--RDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478
Query: 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 649
GQKQ +A+AR +++ P IL+LDEAT+ +DS +E ++ L A+R T++VIAHR
Sbjct: 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE----HTTLVVIAHR 534
Query: 650 LSTIKAVDRIVVIDDGRIIEVGNHAELL-HKGRLY 683
LSTI D I+V+ G+ +E G H +LL +GR +
Sbjct: 535 LSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYW 569
|
Length = 592 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 1e-47
Identities = 96/279 (34%), Positives = 146/279 (52%), Gaps = 16/279 (5%)
Query: 408 VDNLSSLLQSIGATEKVF----QLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRP 463
+D + + + +L+ PS + L GH+ N++ P
Sbjct: 274 IDGAIGGWKQFSGARQAYKRLNELLANYPSR---DPAMPLPEPEGHLSVENVTI-VPPGG 329
Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 523
P L + +++A E +AI+G SGSGKST L++ ++ P+ G + +DG L D
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389
Query: 524 LREKIGFVGQEPQLLQMDIKSNIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 582
+ IG++ Q+ +L + NI +G ++ E I AAK A VHE IL LP GY+T+
Sbjct: 390 FGKHIGYLPQDVELFPGTVAENIARFG--ENADPEKIIEAAKLAGVHELILRLPDGYDTV 447
Query: 583 VDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK 640
+ LSGGQ+QRIA+ARA+ DP +++LDE S LD E E + + AL+
Sbjct: 448 IGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALK---ARG 504
Query: 641 RTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 679
TV+VI HR S + VD+I+V+ DGRI G E+L K
Sbjct: 505 ITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 3e-47
Identities = 98/278 (35%), Positives = 153/278 (55%), Gaps = 18/278 (6%)
Query: 408 VDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPI 467
+ N + + + +++ +L+ LP+ +E + L G + ++ P + PI
Sbjct: 296 IANWKQFVAARQSYKRLNELLAELPAA---AERMPLPAPQGALSVERLTAAPPGQKK-PI 351
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
L + ++A E + I+G SGSGKST LL+ ++ P+ G + +DG DL +W RE+
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDG---ADLR-QWDREQ 407
Query: 528 ----IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 583
IG++ Q+ +L I NI + E + AA+ A VHE IL LP GY+T +
Sbjct: 408 LGRHIGYLPQDVELFDGTIAENIARFGE-EADPEKVIEAARLAGVHELILRLPQGYDTRI 466
Query: 584 DDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
+ LSGGQ+QRIA+ARA+ DP +++LDE S LDSE E + + A +
Sbjct: 467 GEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR---GG 523
Query: 642 TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 679
TV+VIAHR S + +VD+I+V+ DGRI G E+L K
Sbjct: 524 TVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 163 bits (416), Expect = 5e-47
Identities = 73/214 (34%), Positives = 106/214 (49%), Gaps = 45/214 (21%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N+SF YP P+L +V +IE E +AI+G SGSGKST L+L L P+ G++ +DG
Sbjct: 5 NVSFRYPGAEP-PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG 63
Query: 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 573
++ D L + +G++ Q+ +L I NI
Sbjct: 64 ADISQWDPNELGDHVGYLPQDDELFSGSIAENI--------------------------- 96
Query: 574 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 633
LSGGQ+QR+ +ARA+ +P IL+LDE S LD E E + A+
Sbjct: 97 --------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGER---ALNQAI 139
Query: 634 RNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 667
T IVIAHR T+ + DRI+V++DGR+
Sbjct: 140 AALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 178 bits (452), Expect = 2e-46
Identities = 110/303 (36%), Positives = 158/303 (52%), Gaps = 65/303 (21%)
Query: 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY----- 502
G ++ ++++F Y SRP VPI + + ++ + AIVG +GSGKST ++LL+R Y
Sbjct: 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKND 1223
Query: 503 ---------------------------------------EPSDGQ----------IYIDG 513
E G+ I +DG
Sbjct: 1224 HHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDG 1283
Query: 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 573
+ D +++ LR V QEP L M I NI +G +D ED++ A K A + EFI
Sbjct: 1284 VDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFG-KEDATREDVKRACKFAAIDEFIE 1342
Query: 574 SLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 631
SLP Y+T V LSGGQKQRIAIARA+LR+P ILLLDEATS+LDS SE ++ +
Sbjct: 1343 SLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402
Query: 632 ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD----GRIIEV-GNHAELLH-KGRLYAK 685
+++ K +T+I IAHR+++IK D+IVV ++ G ++ G H ELL + +Y K
Sbjct: 1403 DIKD--KADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKK 1460
Query: 686 LVK 688
VK
Sbjct: 1461 YVK 1463
|
Length = 1466 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 3e-46
Identities = 156/580 (26%), Positives = 261/580 (45%), Gaps = 120/580 (20%)
Query: 177 LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTA 236
LVL+ + I S + S C + ++K L+ ++ +QD F D LTS L
Sbjct: 103 LVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDF 162
Query: 237 DCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSF-----LSIIVSVY 291
++++ IG I + G +I L + LTL + C F +I +
Sbjct: 163 YLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLC--ITCVFPLIYICGVICNKK 220
Query: 292 GQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKI-------WLEKLA 344
+ K+ S+L N + ++ +E L +RTV Y E+ L ++ + ++ K
Sbjct: 221 VKINKKTSLLY---NNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKAN 277
Query: 345 FIR----------IRESMAYGLWNMSFITL-----------YRSTQVMAVLLGGMSIMIG 383
F+ I S A+G W + I + + V+++LLG + M
Sbjct: 278 FMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMF- 336
Query: 384 QVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL 443
LT ++ N++ ++S+ AT ++++I+ P + +G KL
Sbjct: 337 -----MLTI--------------ILPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKL 377
Query: 444 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503
+ + +QF N+ FHY +R V I + T+ + A VG SG GKST + L+ RLY+
Sbjct: 378 KDIK-KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD 436
Query: 504 PSDGQIYI-DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC------------ 550
P++G I I D L D++++W R KIG V Q+P L IK+NI Y
Sbjct: 437 PTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNY 496
Query: 551 -------PKDVKNEDIEWAAK---------QAYVHEFILSLPCGYETLVDDDLLS----- 589
++ KN+ AK ++ + Y+T+ D +++
Sbjct: 497 YNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKV 556
Query: 590 -------------------------GGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624
GGQKQRI+IARAI+R+P IL+LDEATS+LD++SE+
Sbjct: 557 LIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEY 616
Query: 625 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664
V+ ++ L+ + R I+IAHRLSTI+ + I V+ +
Sbjct: 617 LVQKTINNLKGN--ENRITIIIAHRLSTIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 4e-46
Identities = 72/239 (30%), Positives = 123/239 (51%), Gaps = 21/239 (8%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ N++ Y L+ V +E E+ ++G +G+GK+T + +L L +P+ G+I
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNI-----MYGCPKDVKNEDIEWAA 563
+ G+ + + +R +IG+V QEP L ++ ++ N+ +YG K+ E IE
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 564 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
+ L V LSGG KQR++IA A+L DP +L+LDE TS LD ES
Sbjct: 122 EL-------FGLEDKANKKVRT--LSGGMKQRLSIALALLHDPELLILDEPTSGLDPESR 172
Query: 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGR 681
+ +L L + T+++ H L + + DR+++++DG+II G EL K
Sbjct: 173 REIWELLRELAKE--GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229
|
Length = 293 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 8e-46
Identities = 79/227 (34%), Positives = 113/227 (49%), Gaps = 31/227 (13%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-LDIRWLR 525
+L + L++E EVV I+G SGSGKST + L L EP G I +DG + D DI LR
Sbjct: 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLR 76
Query: 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQA-----------YVHEFIL 573
K+G V Q+ L + + N+ P VK A ++A +
Sbjct: 77 RKVGMVFQQFNLFPHLTVLENVTLA-PVKVKKLSKAEAREKALELLEKVGLADKADAY-- 133
Query: 574 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 633
P LSGGQ+QR+AIARA+ DP ++L DE TSALD E V VL +
Sbjct: 134 --P---------AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEL---VGEVLDVM 179
Query: 634 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 679
++ + T+I++ H + + V DR++ +D G+IIE G E
Sbjct: 180 KDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 3e-45
Identities = 87/245 (35%), Positives = 129/245 (52%), Gaps = 22/245 (8%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
+ ++ N+SF YP R L V L IE E V ++G +GSGKST + LL L +P+
Sbjct: 1 LRMIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS 58
Query: 507 GQIYIDGFPLTD-LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAA 563
G++ +DG + + LR+K+G V Q P QL ++ + +G N +
Sbjct: 59 GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLE----NLGLPREE 114
Query: 564 KQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
+ V E L L G E L+D LSGGQKQR+AIA + P ILLLDE T+ LD +
Sbjct: 115 IEERVAE-ALEL-VGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPK 172
Query: 622 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII------EVGNHA 674
+ +L L+ + +T+I++ H L + DR+VV+DDG+I+ E+ N A
Sbjct: 173 GRRELLELLKKLKEE--GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
Query: 675 ELLHK 679
ELL
Sbjct: 231 ELLLA 235
|
Length = 235 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 3e-45
Identities = 117/454 (25%), Positives = 194/454 (42%), Gaps = 18/454 (3%)
Query: 205 RLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFI 264
LR +Y L Q + G L RL AD L ++ I + GA A
Sbjct: 87 ALRVRVYERLARQALAGRRRLRRGDLLGRLGADVDALQDLYVRVIVPAGVALVVGAAAVA 146
Query: 265 NLLTLSWP--LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRT 322
+ LS P L L+A L+ + + V + + A + L
Sbjct: 147 AIAVLSVPAALILAAGLLLAGF-VAPLVSLRAARAAEQALARLRGELAAQLTDALDGAAE 205
Query: 323 VRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL-WNMSFITLYR-STQVMAVLLGGMSI 380
+ G L + + R A + L + A+ GG ++
Sbjct: 206 LVASGALPAALAQVEE--ADRELTRAERRAAAATALGAALTLLAAGLAVLGALWAGGPAV 263
Query: 381 MIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEG 440
G+++P L VL A + L + A E++ +++D S
Sbjct: 264 ADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAP 323
Query: 441 VKLQRLMGHVQFV--NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL 498
+G ++S YP P P+L+ V L + E VAI+G SGSGKST + L
Sbjct: 324 AAGAVGLGKPTLELRDLSAGYPGAP--PVLDGVSLDLPPGERVAILGPSGSGKSTLLATL 381
Query: 499 LRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 558
L +P G++ +DG P++ LD +R ++ Q+ L ++ N+ P D +E+
Sbjct: 382 AGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARP-DATDEE 440
Query: 559 IEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATS 616
+ A ++ + +++ +LP G +T++ + LSGG++QR+A+ARA+L D ILLLDE T
Sbjct: 441 LWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTE 500
Query: 617 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 650
LD+E+ +L L + RTV++I H L
Sbjct: 501 HLDAETA---DELLEDLL-AALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 3e-44
Identities = 79/221 (35%), Positives = 112/221 (50%), Gaps = 47/221 (21%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ N+S Y +LN V L IEA E+VA++G SGSGKST + + L EP G I
Sbjct: 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 510 YIDGFPLTDLD--IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQA 566
IDG LTDL+ + LR +IG V Q+ L + + NI G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 567 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
LSGGQ+QR+A+ARA+ DP +LLLDE TSALD + V
Sbjct: 101 ---------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV 139
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGR 666
+ +L +L+ + TV+++ H L + DR+VV+ DG+
Sbjct: 140 RALLKSLQA--QLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 5e-44
Identities = 84/234 (35%), Positives = 120/234 (51%), Gaps = 19/234 (8%)
Query: 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
++ N+S Y V L V L IEA E VAIVG SGSGKST +NLL L +P+ G+
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 509 IYIDGFPLTDLDIRWL----REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDIEWA 562
+ I+G LT L + L R+KIGFV Q LL + + N+ + A
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 563 AKQAYVHEFILSLPCGYETLVDDDL---LSGGQKQRIAIARAILRDPAILLLDEATSALD 619
A++ L G E + LSGGQ+QR+AIARA++ +P I+L DE T LD
Sbjct: 122 AEE-------LLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLD 174
Query: 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 673
S++ V +L L + +T+I++ H K DR++ + DG+I E
Sbjct: 175 SKTAKEVLELLRELNK--ERGKTIIMVTHDPELAKYADRVIELKDGKIEEEELD 226
|
Length = 226 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 9e-44
Identities = 81/237 (34%), Positives = 111/237 (46%), Gaps = 38/237 (16%)
Query: 450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
++ N+S Y V L V L+IE E VAIVG SGSGKST +N+L L P+ G+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 509 IYIDGFPLTDLD----IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGC--PKDVKNEDIEW 561
+ +DG ++ L + R IGFV Q LL + N+ K E E
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 562 AAK-----------QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 610
A + Y E LSGGQ+QR+AIARA+ DP I+L
Sbjct: 121 AEELLERVGLGDRLNHYPSE-----------------LSGGQQQRVAIARALANDPKIIL 163
Query: 611 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 667
DE T LDSE+ V +L L + T T++V+ H + DRI+ + DG+I
Sbjct: 164 ADEPTGNLDSETGKEVMELLRELNKEAGT--TIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 1e-43
Identities = 74/240 (30%), Positives = 125/240 (52%), Gaps = 36/240 (15%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----P 504
++ +++ +Y + L + L I E+ A++G SG GKST + LL RL + P
Sbjct: 1 IELRDLNVYYGDKH---ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 505 SDGQIYIDGFPLTDLDIR--WLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKN 556
+G++ +DG + DLD+ LR ++G V Q+P I N+ YG K+ +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 557 EDIEWAAKQAYVHEFILSLPCGYETLVDDDL----LSGGQKQRIAIARAILRDPAILLLD 612
E +E A ++A + + V D L LSGGQ+QR+ +ARA+ +P +LLLD
Sbjct: 118 ERVEEALRKAALWD-----------EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLD 166
Query: 613 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
E TSALD S ++ ++ L+ + T++++ H + V DR + +GR++E G
Sbjct: 167 EPTSALDPISTAKIEELIAELKKE----YTIVIVTHNMQQAARVADRTAFLLNGRLVEFG 222
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 2e-43
Identities = 85/243 (34%), Positives = 127/243 (52%), Gaps = 41/243 (16%)
Query: 450 VQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
++ N+S + TV L+ V L I E+ I+G SG+GKST + L+ L P+ G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 508 QIYIDGFPLTDLD---IRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNED 558
+++DG LT L +R LR+KIG + Q LL + N+ + G PK
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPK------ 115
Query: 559 IEWAAKQAYVHEFILSLPCGYETLVD-DDL-------LSGGQKQRIAIARAILRDPAILL 610
A + V E + LV D LSGGQKQR+AIARA+ +P ILL
Sbjct: 116 ---AEIKQRVAELL--------ELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILL 164
Query: 611 LDEATSALDSESEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 668
DEATSALD E+ + +L L++ + + T+++I H + +K + DR+ V+D GR++
Sbjct: 165 CDEATSALDPET---TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLV 221
Query: 669 EVG 671
E G
Sbjct: 222 EEG 224
|
Length = 339 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 2e-43
Identities = 74/232 (31%), Positives = 117/232 (50%), Gaps = 23/232 (9%)
Query: 454 NISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512
N+S +P+ +V L+ V +I+ E + +VG SGSGKST +L L +P+ G I D
Sbjct: 6 NLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFD 65
Query: 513 GFPLTDLDIRWLRE---KIGFVGQEPQL-L--QMDIKSNIMYGCPKDVKNEDIEWAAKQA 566
G L L R + +I V Q+P L +M I I + + A K+A
Sbjct: 66 GKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEP-LRIHGKLSKKEARKEA 124
Query: 567 YVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
+ + + L ++ L LSGGQ+QR+AIARA+ +P +L+ DE TSALD
Sbjct: 125 VLLLLVG-VG-----LPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV 178
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
+ + +L L+ + T++ I H L + + DR+ V+ G+I+E G
Sbjct: 179 SVQAQILDLLKKLQE--ELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 2e-42
Identities = 79/229 (34%), Positives = 118/229 (51%), Gaps = 27/229 (11%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ N+ + +L + LT++ EVV I+G SGSGKST + + L EP G I
Sbjct: 1 IEIKNLHKSFGDFH---VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 510 YIDGFPLTD--LDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQA 566
IDG LTD +I LR+K+G V Q+ L + + NI P VK A ++A
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA-PIKVKGMSKAEAEERA 116
Query: 567 YVH-------EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619
+ + P LSGGQ+QR+AIARA+ +P ++L DE TSALD
Sbjct: 117 LELLEKVGLADKADAYP---------AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD 167
Query: 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 667
E V VL +++ + T++V+ H + + V DR++ +DDGRI
Sbjct: 168 PE---LVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 4e-42
Identities = 73/217 (33%), Positives = 105/217 (48%), Gaps = 61/217 (28%)
Query: 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510
+ N+SF Y R L++V LT++A E+VA+VG +GSGKST + + L +P+ G+I
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 511 IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE 570
IDG + L + LR +IG+V PQL
Sbjct: 58 IDGKDIAKLPLEELRRRIGYV---PQL--------------------------------- 81
Query: 571 FILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 630
SGGQ+QR+A+ARA+L +P +LLLDE TS LD S +L
Sbjct: 82 ------------------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRE---RLL 120
Query: 631 HALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGR 666
LR + RTVI++ H A DR++V+ DG+
Sbjct: 121 ELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 7e-42
Identities = 75/238 (31%), Positives = 121/238 (50%), Gaps = 20/238 (8%)
Query: 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
++ N+S + V L V L++ E+ I+G SG+GKST + + L P+ G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 509 IYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAK 564
+ +DG LT L ++R R +IG + Q LL + N+ P ++
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL--PLEI------AGVP 113
Query: 565 QAYVHEFILSLP--CGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
+A + E +L L G E D LSGGQKQR+ IARA+ +P +LL DEATSALD
Sbjct: 114 KAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDP 173
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
E+ + +L + + T+++I H + +K + DR+ V++ G ++E G E+
Sbjct: 174 ETTQSILALLRDIN--RELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 6e-41
Identities = 77/236 (32%), Positives = 129/236 (54%), Gaps = 21/236 (8%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ N+SF YP+ L +V I E VAI+G +GSGKST +L L +P G+I
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGC------PKDVKNEDIEW 561
IDG ++ +++ +R+KIG + Q P Q + ++ +I +G PK +K + I+
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMK-DIIDD 125
Query: 562 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
AK+ + +++ P LSGGQKQR+AIA + +P I++ DE+TS LD +
Sbjct: 126 LAKKVGMEDYLDKEP---------QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
Query: 622 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677
+ +K ++ LR K+T+I I H + D+++V +G++I G E+L
Sbjct: 177 GKREIKKIMVDLRK--TRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEIL 230
|
Length = 271 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 2e-40
Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 25/225 (11%)
Query: 448 GHVQFVNISFHY-PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
G ++ N+S Y P P P+L +V ++A E + IVG +G+GKST + L R E +
Sbjct: 5 GEIEVENLSVRYAPDLP--PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 566
G+I IDG ++ + + LR + + Q+P L I+SN+ D + E++ ++
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL------DPFD---EYSDEEI 113
Query: 567 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
Y L + G LS GQ+Q + +ARA+L+ P +L+LDEAT+++D ++ +
Sbjct: 114 YG---ALRVSEGGLN------LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI 164
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 671
+ + + T++ IAHRL TI D+I+V+D G + E
Sbjct: 165 QKTIREEFTNS----TILTIAHRLRTIIDYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 146 bits (372), Expect = 2e-40
Identities = 76/241 (31%), Positives = 115/241 (47%), Gaps = 47/241 (19%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ +S Y S V L+ + LT+E E +A++G SG GK+T + L+ L P G+I
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGC-----PKDVKNEDIEWAA 563
IDG +T + R IG V Q+ L + + NI +G PK +
Sbjct: 58 LIDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 564 K--------QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 615
+ Y HE LSGGQ+QR+A+ARA+ R+P++LLLDE
Sbjct: 116 ELVGLEGLLNRYPHE-----------------LSGGQQQRVALARALAREPSLLLLDEPL 158
Query: 616 SALDSES----EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEV 670
SALD++ +K + L T I + H A+ DRI V+++GRI++V
Sbjct: 159 SALDAKLREELREELKELQREL------GITTIYVTHDQEEALALADRIAVMNEGRIVQV 212
Query: 671 G 671
G
Sbjct: 213 G 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 9e-40
Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 47/215 (21%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N+S Y + L+ + LT+E E+ ++G +G+GK+T + ++L L +P G+I + G
Sbjct: 5 NLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG 61
Query: 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 573
+ + ++ +IG++ +EP L + L
Sbjct: 62 KDIKK-EPEEVKRRIGYLPEEPSLYEN--------------------------------L 88
Query: 574 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 633
+ E L LSGG KQR+A+A+A+L DP +L+LDE TS LD ES +L L
Sbjct: 89 T---VRENL----KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLREL 141
Query: 634 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 667
+ + +T+++ +H L + + DR+ ++++GRI
Sbjct: 142 KKE---GKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 1e-39
Identities = 77/237 (32%), Positives = 122/237 (51%), Gaps = 23/237 (9%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++F N+S Y ++ ++ V LTIE E + ++G SGSGK+T + ++ RL EP+ G+I
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 568
IDG ++DLD LR KIG+V Q+ L + + NI PK + + +
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIAT-VPKLLG---WDKERIKKRA 114
Query: 569 HEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
E + + D LSGGQ+QR+ +ARA+ DP ILL+DE ALD +
Sbjct: 115 DELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITR--- 171
Query: 627 KGVLHALRNDCKT-----KRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 677
L+ + K +T++ + H + +K DRI V+D G I++ E+L
Sbjct: 172 ----KQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL 224
|
Length = 309 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 142 bits (362), Expect = 7e-39
Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 28/232 (12%)
Query: 450 VQFVNISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
++ N+S Y V L + L++E E VA+VG SG GKST + ++ L P+ G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 509 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAY 567
+ +DG P+T G+V Q+ LL + + N+ G ++ + + A +
Sbjct: 61 VLVDGEPVTGPGPD-----RGYVFQQDALLPWLTVLDNVALG----LELQGVPKAEARER 111
Query: 568 VHEFI----LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
E + LS G+E LSGG +QR+A+ARA+ DP +LLLDE SALD+ +
Sbjct: 112 AEELLELVGLS---GFENAYPHQ-LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTR 167
Query: 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV---DRIVVID--DGRIIEV 670
++ L + +T +TV+++ H + +AV DR+VV+ GRI+
Sbjct: 168 EQLQEELLDIWR--ETGKTVLLVTHDID--EAVFLADRVVVLSARPGRIVAE 215
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 1e-38
Identities = 77/240 (32%), Positives = 118/240 (49%), Gaps = 23/240 (9%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M ++ N+ + S + +N L IE E V ++G SG GKST + ++ L EP+
Sbjct: 1 MAELELKNVRKSFGSFEVLKDVN---LDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS 57
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNI-----MYGCPKDVKNEDIE 560
G+I IDG +TDL + I V Q L M + NI + G PK ++ ++
Sbjct: 58 GEILIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVK 115
Query: 561 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
AK + + P LSGGQ+QR+A+ARA++R P + LLDE S LD+
Sbjct: 116 EVAKLLGLEHLLNRKP---------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 679
+ ++ + L + T I + H + DRIVV++DGRI +VG EL +
Sbjct: 167 KLRVLMRSEIKKLHE--RLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224
|
Length = 338 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 3e-38
Identities = 83/228 (36%), Positives = 123/228 (53%), Gaps = 17/228 (7%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M ++F +S+ S IL + + E + IVG SG+GKST + L+ RL +P++
Sbjct: 1 MNEIEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTE 57
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP--KDVKNEDIEWAAK 564
G I IDG + +D+ LR KIG V Q+P L + +K NI YG P K KN D+E+
Sbjct: 58 GSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYG-PMLKGEKNVDVEYYLS 116
Query: 565 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624
I+ L Y T + LSGG+ QR++IAR + +P +LLLDE TSALD S
Sbjct: 117 -------IVGLNKEYATRDVKN-LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTE 168
Query: 625 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
++ ++ L+N K TVI I H + K + D ++ G ++E
Sbjct: 169 IIEELIVKLKN--KMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 3e-38
Identities = 77/236 (32%), Positives = 117/236 (49%), Gaps = 23/236 (9%)
Query: 454 NISFHYP--SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511
+ISF YP + L V ++ E VAIVG +GSGKST LL L P G I +
Sbjct: 10 HISFRYPDAATYA---LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITV 66
Query: 512 DGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMY-----GCPKDVKNEDIEWAAK 564
G L++ + +R ++G V Q P Q + ++ ++ + G P++ E ++ A +
Sbjct: 67 GGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALR 126
Query: 565 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624
Q + +F+ P LSGGQKQR+AIA + P I++LDEATS LD
Sbjct: 127 QVGMEDFLNREPHR---------LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRR 177
Query: 625 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 680
V + L+ + TV+ I H L DR++V++ G I+E G E+ G
Sbjct: 178 EVLETVRQLKE--QKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231
|
Length = 279 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 7e-38
Identities = 134/523 (25%), Positives = 233/523 (44%), Gaps = 32/523 (6%)
Query: 180 LCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQ 239
L + G S SI I + L + L L + FF+ G L +R + +
Sbjct: 1014 LGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELD 1073
Query: 240 RLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVY-----GQY 294
+ ++I I M + + GA I +L L+ P+ + L V + Q
Sbjct: 1074 TVDSMIPPVIKMFMGSLFNVIGALIVIL-LATPIAAVIIPPLGLLYFFVQRFYVASSRQL 1132
Query: 295 QKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY 354
++ SV +H N ETL + +R + EE+E R+ + +
Sbjct: 1133 KRLESVSRSPVYSHFN----ETLLGVSVIRAF--EEQE--RFIHQSDLKVDENQKAYYPS 1184
Query: 355 GLWNMSFITLYRSTQVMAVLLGGMSIMIGQ--VSPEQLTKYVLYCEWLIYATWRMVDNLS 412
+ N VL + +I + +S + V Y + + +V S
Sbjct: 1185 IVANRWLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSS 1244
Query: 413 SLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRL---MGHVQFVNISFHYPSRPTVP-IL 468
+ +I A E++ + + + + G V+F N Y R + +L
Sbjct: 1245 EMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRY--REDLDLVL 1302
Query: 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528
H+ +TI E V IVG +G+GKS+ L R+ E ++G+I IDG + + + LR KI
Sbjct: 1303 RHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362
Query: 529 GFVGQEPQLLQMDIKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG--YETLVDD 585
+ Q+P L ++ N+ + D E++ WA + A++ F+ +LP +E
Sbjct: 1363 TIIPQDPVLFSGSLRMNLDPFSQYSD---EEVWWALELAHLKTFVSALPDKLDHECAEGG 1419
Query: 586 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 645
+ LS GQ+Q + +ARA+LR IL+LDEAT+A+D E+++ ++ + DC TV+
Sbjct: 1420 ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDC----TVLT 1475
Query: 646 IAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 688
IAHRL+TI R++V+D G + E G + LL + ++ + K
Sbjct: 1476 IAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAK 1518
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 7e-38
Identities = 73/236 (30%), Positives = 124/236 (52%), Gaps = 27/236 (11%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N+SF Y +P IL+ + +I E+ I+G +GSGKST + L L +P G++ +DG
Sbjct: 7 NLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDG 63
Query: 514 FPLTDLDIRWLREKIGFVGQEP---------QLLQMDIKSNI-MYGCPKDVKNEDIEWAA 563
+ L + L +K+ +V Q P +L+ + ++ ++G P E +E A
Sbjct: 64 KDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEAL 123
Query: 564 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
+ + + VD+ LSGG++QR+ IARA+ ++ ILLLDE TS LD
Sbjct: 124 ELLGLEHLA-------DRPVDE--LSGGERQRVLIARALAQETPILLLDEPTSHLD---I 171
Query: 624 HYVKGVLHALRNDCKTK-RTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 677
+ VL LR+ + K TV+++ H L+ + D ++++ DG+I+ G E+L
Sbjct: 172 AHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 1e-37
Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 52/234 (22%)
Query: 454 NISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
N+ ++P V ++ V +I+ E + +VG SG GKST L+L L EP+ G
Sbjct: 9 NLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG 68
Query: 508 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAY 567
+I +G +T L RE++ L++ K G P++ Y
Sbjct: 69 EILFEGKDITKLSKEERRERV---------LELLEKV----GLPEEFLYR---------Y 106
Query: 568 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
HE SGGQ+QRI IARA+ +P +++ DE SALD +
Sbjct: 107 PHEL-----------------SGGQRQRIGIARALALNPKLIVADEPVSALDVSVQ---A 146
Query: 628 GVLHALRNDCKTKR--TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 678
+L+ L+ D + + T + I+H LS ++ + DRI V+ G+I+E+G E+
Sbjct: 147 QILNLLK-DLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199
|
Length = 268 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 3e-37
Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 46/223 (20%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
+ N+SF YP + +L ++ L ++ E +A++G SGSGKST + LL +P G+I
Sbjct: 1 LSINNVSFSYPEQEQ-QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 569
+DG P++DL+ + L I + Q P L +++N+ G
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL--GRR------------------ 98
Query: 570 EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV-KG 628
SGG++QR+A+AR +L+D I+LLDE T LD +E +
Sbjct: 99 ------------------FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSL 140
Query: 629 VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 671
+ L++ +T+I I H L+ I+ +D+I+ +++G+II G
Sbjct: 141 IFEVLKD-----KTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 6e-37
Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 22/221 (9%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE- 526
+N V L + E+ I+GLSGSGKST + + RL EP+ G++ IDG + + + LRE
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 527 ---KIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPC 577
KI V Q LL + N+ + G P+ + E A + + + P
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP- 158
Query: 578 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 637
D LSGG +QR+ +ARA+ DP ILL+DEA SALD ++ L L+
Sbjct: 159 --------DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA-- 208
Query: 638 KTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 677
+ ++T++ I H L ++ DRI ++ DGR+++VG E+L
Sbjct: 209 ELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 7e-37
Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 47/221 (21%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N+S Y R +L+ + L+IEA E+V I+G +G+GKST + L L +PS G+I +DG
Sbjct: 4 NLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 514 FPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 572
L L + L KI +V PQ L + +
Sbjct: 61 KDLASLSPKELARKIAYV---PQALELLGL----------------------AHLADRPF 95
Query: 573 LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 632
LSGG++QR+ +ARA+ ++P ILLLDE TS LD + +L
Sbjct: 96 NE-------------LSGGERQRVLLARALAQEPPILLLDEPTSHLDI---AHQIELLEL 139
Query: 633 LRNDCKTK-RTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVG 671
LR + + +TV+++ H L+ + DR++++ DGRI+ G
Sbjct: 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 1e-36
Identities = 71/232 (30%), Positives = 109/232 (46%), Gaps = 43/232 (18%)
Query: 450 VQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
+ + SF + S T L + L + E+VAIVG GSGKS+ ++ LL E G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 508 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-------VK----N 556
+ + G I +V QEP + I+ NI++G P D +K
Sbjct: 61 SVSVPG-------------SIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALE 107
Query: 557 EDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEA 614
D+E LP G T + + LSGGQKQRI++ARA+ D I LLD+
Sbjct: 108 PDLE-------------ILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154
Query: 615 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666
SA+D+ ++ + + +T I++ H+L + D+IVV+D+GR
Sbjct: 155 LSAVDAHVGRHI--FENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 4e-36
Identities = 79/251 (31%), Positives = 121/251 (48%), Gaps = 45/251 (17%)
Query: 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510
+ N+S YP+ L V L+I E VA++G SG+GKST + L L EP+ G +
Sbjct: 2 EVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 511 IDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIMYG----------CPKDVKN 556
IDG + L +R LR +IG + Q+ L+ ++ + N++ G
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 557 EDIEWA---------AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607
E+ + A +AY D LSGGQ+QR+AIARA+++ P
Sbjct: 120 EEKQRALAALERVGLLDKAY-------QRA--------DQLSGGQQQRVAIARALMQQPK 164
Query: 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLSTIKA-VDRIVVIDDG 665
++L DE ++LD S V+ L+ + + TVIV H++ + DRIV + DG
Sbjct: 165 LILADEPVASLDPASSRQ---VMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDG 221
Query: 666 RIIEVGNHAEL 676
RI+ G AEL
Sbjct: 222 RIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 8e-36
Identities = 74/229 (32%), Positives = 115/229 (50%), Gaps = 35/229 (15%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTD--LD 520
L ++ L I N+V A++G SG GKST + L R+ + G++ DG + D +D
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKNEDIEWAAKQAYVHEFILS 574
+ LR ++G V Q+P M I NI YG K +E +E + K+A +
Sbjct: 77 VVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKA-------A 129
Query: 575 LPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 628
L V D L LSGGQ+QR+ IARA+ +P +LLLDE TSALD + ++
Sbjct: 130 LW----DEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEE 185
Query: 629 VLHALRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAEL 676
++ L K K T++++ H + + DR DG ++E G ++
Sbjct: 186 LIQEL----KKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 1e-35
Identities = 82/236 (34%), Positives = 116/236 (49%), Gaps = 25/236 (10%)
Query: 454 NISFHYPSRPTV-PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512
N+S Y LN+V L IE E + IVG SGSGKST LL L +PS G I +D
Sbjct: 8 NLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLD 67
Query: 513 GFPLTDLD-IRWLREKIGFVGQEPQLL---QMDIKSNIMYG-CPKDVKNEDIEWAAKQAY 567
G PL + + V Q+P + + + P + A
Sbjct: 68 GKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQ 127
Query: 568 VH---EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624
V F+ P LSGGQ+QRIAIARA++ +P +L+LDE TSALD
Sbjct: 128 VGLPPSFLDRRP---------HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV---- 174
Query: 625 YVKGVLHALRNDCKTKR--TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
V+ + L + K +R T + I+H L+ ++ + DRI V+D+G+I+E+G ELL
Sbjct: 175 SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230
|
Length = 252 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 1e-35
Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 29/242 (11%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ ++ + R +L V L + E++AI+G SGSGKST + L++ L P G++
Sbjct: 1 IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 510 YIDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIMY------GCPKDVKNEDI 559
IDG ++ L ++ LR ++G + Q L + + N+ + ++ E +
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 560 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619
K V L G E L +L SGG K+R+A+ARA+ DP +LL DE T+ LD
Sbjct: 118 --LEKLEAV-----GLR-GAEDLYPAEL-SGGMKKRVALARALALDPELLLYDEPTAGLD 168
Query: 620 SESEHYVKGVLHALRNDCK--TKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 676
GV+ L K T I++ H L T A+ DRI V+ DG+I+ G EL
Sbjct: 169 P----IASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
Query: 677 LH 678
Sbjct: 225 RA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 2e-35
Identities = 73/236 (30%), Positives = 115/236 (48%), Gaps = 34/236 (14%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M ++ +S + V +L + L++E E VAI+G SG GKST + L+ L +P+
Sbjct: 1 MALLEIEGVSKSFG---GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS 57
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDIEWAAK 564
G++ +DG P+T IG+V QE LL + + N+ G + + AK
Sbjct: 58 GEVLLDGRPVTG-----PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAK 112
Query: 565 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624
+ L+ G+E LSGG +QR+AIARA+ P +LLLDE ALD+
Sbjct: 113 -ELLELVGLA---GFEDKYPHQ-LSGGMRQRVAIARALATRPKLLLLDEPFGALDA---- 163
Query: 625 YVKGVLHALRND--CKTKRTVIVIAH------RLSTIKAVDRIVVIDD--GRIIEV 670
+ L +T++TV+++ H L+ DR+VV+ + GRI E
Sbjct: 164 LTREELQDELLRLWEETRKTVLLVTHDVDEAVYLA-----DRVVVLSNRPGRIGEE 214
|
Length = 248 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 4e-35
Identities = 84/226 (37%), Positives = 113/226 (50%), Gaps = 32/226 (14%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE- 526
+N L I E+ I+GLSGSGKST V +L RL EP+ GQI+IDG + LRE
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 527 ---KIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPC 577
KIG V Q+ L M I N G P+ + E K + E+ P
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP- 127
Query: 578 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD-----SESEHYVKGVLHA 632
D LSGG +QR+ +ARA+ +P ILL+DEA SALD S + K L A
Sbjct: 128 --------DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKK--LQA 177
Query: 633 LRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELL 677
++T++ I H L I+ DRIV++ G I++VG E+L
Sbjct: 178 -----TLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 5e-35
Identities = 70/255 (27%), Positives = 117/255 (45%), Gaps = 58/255 (22%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
++ N+S + ++ + L I+ E V ++G SG GK+T + ++ +PS
Sbjct: 3 KPALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG--CPKDVKNEDIEWAA 563
G+I +DG +TD+ + IG V Q L M ++ N+ +G K +K +I+
Sbjct: 60 GEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117
Query: 564 KQA------------YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL 611
++A H+ LSGGQ+QR+A+ARA++ +P +LLL
Sbjct: 118 EEALELVGLEGFADRKPHQ-----------------LSGGQQQRVALARALVPEPKVLLL 160
Query: 612 DEATSALDSESEHYVKGVLHALRNDC---------KTKRTVIVIAHRLSTIKAV-DRIVV 661
DE SALD++ LR + T + + H A+ DRI V
Sbjct: 161 DEPLSALDAK-----------LREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAV 209
Query: 662 IDDGRIIEVGNHAEL 676
++DGRI +VG E+
Sbjct: 210 MNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 2e-34
Identities = 80/239 (33%), Positives = 120/239 (50%), Gaps = 22/239 (9%)
Query: 454 NISFHYPSRPT--------VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
N+S Y SR V ++ V + E + +VG SGSGKST +L L PS
Sbjct: 285 NLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS 344
Query: 506 DGQIYIDG--FPLTDLDIRWLREKIGFVGQEPQL-L--QMDIKSNIMYGCPKDVKNEDIE 560
G I DG LT ++R LR +I V Q+P L +M + + +
Sbjct: 345 SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPL---RIHGGGS 401
Query: 561 WAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSAL 618
A ++A V E +L L +D LSGGQ+QR+AIARA+ +P +L+LDE SAL
Sbjct: 402 GAERRARVAE-LLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSAL 460
Query: 619 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 676
D + V +L L+ + T + I+H L+ ++ + DR+ V+ DGRI+E G ++
Sbjct: 461 DVSVQAQVLNLLKDLQEELGL--TYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKV 517
|
Length = 539 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-34
Identities = 75/228 (32%), Positives = 113/228 (49%), Gaps = 15/228 (6%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
IS + V L+ V LT+ EV A++G +G+GKST + +L +Y P G+I IDG
Sbjct: 13 GISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDG 69
Query: 514 FPLTDLDIRWLREK-IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 571
P+ R I V QE L+ + + NI G + I+ A + E
Sbjct: 70 KPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAREL 129
Query: 572 I--LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD-SESEHYVKG 628
+ L L +TLV D LS Q+Q + IARA+ D +L+LDE T+AL E+E +
Sbjct: 130 LARLGLDIDPDTLVGD--LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETER-LFD 186
Query: 629 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAE 675
++ L+ +I I+HRL + + DRI V+ DGR++ A
Sbjct: 187 LIRRLKAQ---GVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAA 231
|
Length = 500 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 2e-34
Identities = 82/234 (35%), Positives = 127/234 (54%), Gaps = 17/234 (7%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++F N+S H+ +L+++ L I+ EVV I+G SGSGKST + + +L E + G +
Sbjct: 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 510 YIDGFPLTD--LDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQA 566
+DG + D +D R +R++ G V Q+ L + N+M+G P V+ E A KQA
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFG-PLRVRGASKEEAEKQA 117
Query: 567 YVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624
E + + G LSGGQ+QR+AIARA+ P ++L DE TSALD E H
Sbjct: 118 --RELLAKV--GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRH 173
Query: 625 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
V V+ L + T++++ H + + V R++ ID GRI E G+ L+
Sbjct: 174 EVLKVMQDLAEE---GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224
|
Length = 240 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 6e-33
Identities = 85/247 (34%), Positives = 128/247 (51%), Gaps = 50/247 (20%)
Query: 450 VQFVNISFHYP-SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
++ NIS +P T+ LN+V L I A E+ ++G SG+GKST + + L P+ G+
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 509 IYIDGFPLTDLD---IRWLREKIGFVGQEPQLLQMDIKS------NI-----MYGCPKDV 554
+ +DG LT L +R R +IG + Q LL S N+ + G PK
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLL-----SSRTVFDNVALPLELAGTPK-- 114
Query: 555 KNEDIEWAAKQAYVHEFILSLPCGYETLVD-DDL-------LSGGQKQRIAIARAILRDP 606
+I+ A V E + LV D LSGGQKQR+AIARA+ +P
Sbjct: 115 --AEIK-----ARVTELL--------ELVGLSDKADRYPAQLSGGQKQRVAIARALASNP 159
Query: 607 AILLLDEATSALDSESEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIKAV-DRIVVIDD 664
+LL DEATSALD + + +L L++ + + T+++I H + +K + DR+ VID
Sbjct: 160 KVLLCDEATSALDPAT---TRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDA 216
Query: 665 GRIIEVG 671
GR++E G
Sbjct: 217 GRLVEQG 223
|
Length = 343 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 9e-33
Identities = 81/223 (36%), Positives = 115/223 (51%), Gaps = 22/223 (9%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE- 526
+N L +E E+ I+GLSGSGKST V LL RL EP+ G+I +DG + L LRE
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 527 ---KIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPC 577
KI V Q LL + N+ + G PK + E A + + + P
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162
Query: 578 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 637
+ LSGG +QR+ +ARA+ DP ILL+DEA SALD ++ L L+
Sbjct: 163 --------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA-- 212
Query: 638 KTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELLHK 679
K K+T++ I H L ++ DRI ++ DG I++VG E+L
Sbjct: 213 KLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 1e-32
Identities = 73/236 (30%), Positives = 120/236 (50%), Gaps = 20/236 (8%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++F N++ Y +N++ L I E + ++G SGSGK+T + ++ RL EP+ G+I
Sbjct: 1 IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEW--AAKQA 566
+IDG + + D LR KIG+V Q+ L M ++ NI PK +K W +
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIAL-VPKLLK-----WPKEKIRE 112
Query: 567 YVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624
E + + D LSGGQ+QR+ +ARA+ DP +LL+DE ALD
Sbjct: 113 RADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDP---- 168
Query: 625 YVKGVLHA--LRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELL 677
+ L R + +T++ + H + + DRI ++ +G I++VG E+L
Sbjct: 169 ITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 1e-32
Identities = 129/509 (25%), Positives = 234/509 (45%), Gaps = 48/509 (9%)
Query: 204 KRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAF 263
KRL + + +++L + FF T G + +R + D + + N +NM + Q F
Sbjct: 983 KRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTF 1042
Query: 264 INLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRA-SVLTQECNAHANNVAQ--ETLCMM 320
+ T+S T+S I L + + Y YQ + V + + AQ E L +
Sbjct: 1043 ALIGTVS---TISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGL 1099
Query: 321 RTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSI 380
++R Y + + K+ + ++ + L N S R + LGG+ I
Sbjct: 1100 SSIRAYKAYD--------RMAKINGKSMDNNIRFTLANTSS---NRWLTIRLETLGGVMI 1148
Query: 381 -------MIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ-------SIGATEKVFQ 426
++ + E + L+ T + LS +L+ S+ + E+V
Sbjct: 1149 WLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGN 1208
Query: 427 LIDLLPSNQFLSEG---VKLQRLMGHVQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVA 482
IDL + E V G ++F ++ Y RP +P +L+ + + +E V
Sbjct: 1209 YIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVG 1266
Query: 483 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI 542
+VG +G+GKS+ +N L R+ E G+I ID + + LR + + Q P L +
Sbjct: 1267 VVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTV 1326
Query: 543 KSNIMYGCPKDVKNEDIEWAA-KQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIA 599
+ NI P N+ W A ++A++ + I P G + V + + S GQ+Q +++A
Sbjct: 1327 RFNID---PFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLA 1383
Query: 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 659
RA+LR IL+LDEAT+++D ++ ++ + C T++VIAHRL+TI D+I
Sbjct: 1384 RALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSC----TMLVIAHRLNTIIDCDKI 1439
Query: 660 VVIDDGRIIEVGNHAELLHK-GRLYAKLV 687
+V+ G+++E + ELL + + ++V
Sbjct: 1440 LVLSSGQVLEYDSPQELLSRDTSAFFRMV 1468
|
Length = 1495 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 1e-32
Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 36/226 (15%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTD--L 519
L + L I N+V A++G SG GKST + L R+ + G++ +DG + D +
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK------DVKNEDIEWAAKQAYVHEFIL 573
D+ LR ++G V Q+P M I N+ YG + +E +E + K+A + +
Sbjct: 82 DVVELRRRVGMVFQKPNPFPMSIYDNVAYG-LRLHGIKDKELDEIVESSLKKAALWD--- 137
Query: 574 SLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
V D L LSGGQ+QR+ IARA+ P +LL+DE TSALD S ++
Sbjct: 138 --------EVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIE 189
Query: 628 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 672
++ L K K T++++ H + V D G ++E G
Sbjct: 190 ELITEL----KKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGP 231
|
Length = 253 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 1e-32
Identities = 81/231 (35%), Positives = 125/231 (54%), Gaps = 12/231 (5%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N++F Y LN V ++ E ++I+G +GSGKST V L+ L E GQI IDG
Sbjct: 9 NLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDG 68
Query: 514 FPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 571
LT+ ++ +R KIG V Q P Q + ++ ++ +G ++N+ I + V+E
Sbjct: 69 DLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG----LENKGIPHEEMKERVNE- 123
Query: 572 ILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 629
L L G + + + LSGGQKQR+AIA A+ P I++LDEATS LD E +
Sbjct: 124 ALEL-VGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKT 182
Query: 630 LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 680
+ +R+D + TVI I H L + DR++V+ +G++ EL +G
Sbjct: 183 IKGIRDD--YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231
|
Length = 279 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 1e-32
Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 23/227 (10%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLR 525
L++V + IE E V ++G +GSGKST + L L +P+ G+I IDG +TD + + +R
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 526 EKIGFVGQEP--QLLQMDIKSNIMYGCPKD--VKNEDIEWAAKQAYVHEFILSLPCGYET 581
+K+G V Q P QL + I+ +I +G P + + E+IE K+A I+ L YE
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFG-PINLGLSEEEIENRVKRAMN---IVGLD--YED 136
Query: 582 LVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 639
D LSGGQK+R+AIA + +P IL+LDE T+ LD + + + L +
Sbjct: 137 YKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHK--EY 194
Query: 640 KRTVIVIAHRLSTI-KAVDRIVVIDDGRII------EVGNHAELLHK 679
T+I+++H + + K DRI+V++ G+ EV E L
Sbjct: 195 NMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLES 241
|
Length = 287 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-32
Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 30/210 (14%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG---FPLTDLDIR- 522
IL+ + LTIE ++ AI+G SGSGKST +N++ L + GQ+Y++G PL
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 523 WLREKIGFVGQEPQLLQMD-IKSNIMYGC-----PKDVKNEDIEWAAKQ----AYVHEFI 572
+ REK+G++ Q L++ + ++ N+ G K K E + A ++ + + I
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI 132
Query: 573 LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 632
YE LSGG++QR+A+ARAIL+ P ++L DE T +LD ++ V +L
Sbjct: 133 ------YE-------LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
Query: 633 LRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662
L ++ +T+I++ H K DR++ +
Sbjct: 180 LNDE---GKTIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-32
Identities = 63/225 (28%), Positives = 111/225 (49%), Gaps = 37/225 (16%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
+++ Y P +L V ++ E +AIVG +G+GKST + +L L +P+ G I + G
Sbjct: 4 DLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI------------MYGCPKDVKNEDIEW 561
PL R++IG+V PQ +D I G + + D
Sbjct: 61 KPLEKE-----RKRIGYV---PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKA- 111
Query: 562 AAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALD 619
+A E + G L D + LSGGQ+QR+ +ARA+++DP +LLLDE + +D
Sbjct: 112 KVDEA--LERV-----GLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164
Query: 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVID 663
+++ + + LR + T++V+ H L + + DR+++++
Sbjct: 165 PKTQ---EDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLN 206
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 2e-32
Identities = 67/236 (28%), Positives = 109/236 (46%), Gaps = 24/236 (10%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++F N+S YP L V I E V + G SG+GKST + L+ P+ G+I
Sbjct: 2 IRFENVSKAYPGGR--EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 510 YIDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIE 560
++G L+ L +I +LR +IG V Q+ +LL + N+ G P +
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 561 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
+ +LP LSGG++QR+AIARAI+ PA+LL DE T LD
Sbjct: 120 EVLDLVGLKHKARALP---------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD-RIVVIDDGRIIEVGNHAE 675
+ ++ + TV++ H L + + R++ ++DGR++ +
Sbjct: 171 D---LSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 3e-32
Identities = 67/222 (30%), Positives = 116/222 (52%), Gaps = 23/222 (10%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ N++ Y +RP +L + L++E E+ A++G +G+GKST + +L L +PS G+I
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD------IKSNIMYGCPKDVKNEDIEWAA 563
I G P+ R +IG+V PQ +D +K ++ G
Sbjct: 62 KIFGKPVRKRR---KRLRIGYV---PQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKK 115
Query: 564 KQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
+ V E + + G E L D + LSGGQKQR+ +ARA+ ++P +LLLDE + +D
Sbjct: 116 DKEKVDEALERV--GMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA 173
Query: 622 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVI 662
+ + +L LR + +TV+++ H L + A DR++ +
Sbjct: 174 GQKEIYDLLKELRQE---GKTVLMVTHDLGLVMAYFDRVICL 212
|
Length = 254 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 4e-32
Identities = 149/532 (28%), Positives = 242/532 (45%), Gaps = 92/532 (17%)
Query: 204 KRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAF 263
KRL + + ++L + FF T +G + +R D + + +NM L Q F
Sbjct: 986 KRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTF 1045
Query: 264 INLLTLSWPLTLSALLICSFLSIIVSVYGQYQ------KRASVLTQECNAHANNVAQ--E 315
+ + +S T+S I L + Y YQ KR +T+ + AQ E
Sbjct: 1046 VLIGIVS---TISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITR-----SPVYAQFGE 1097
Query: 316 TLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM----AYGLWNMSF-----ITLYR 366
L + T+R Y +++A I R SM + L NMS I L
Sbjct: 1098 ALNGLSTIRAYKA-----------YDRMAEINGR-SMDNNIRFTLVNMSSNRWLAIRLET 1145
Query: 367 STQVMAVLLGGMSIMIGQVSPEQ---------LTKYVLYCEWLIYATWRMVDNLSSLLQ- 416
+M L ++M + Q L Y L L+ A R L+SL +
Sbjct: 1146 LGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLR----LASLAEN 1201
Query: 417 SIGATEKVFQLIDLLPSNQFLSEGVKLQR------LMGHVQFVNISFHYPSRPTVP-ILN 469
S+ A E+V IDL + E R G ++F ++ Y RP +P +L+
Sbjct: 1202 SLNAVERVGTYIDLPSEAPLVIEN---NRPPPGWPSSGSIKFEDVVLRY--RPELPPVLH 1256
Query: 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529
+ I +E V IVG +G+GKS+ +N L R+ E G+I IDG ++ + LR+ +G
Sbjct: 1257 GLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316
Query: 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDD 585
+ Q P L ++ N+ D NE D+ + ++A++ + I G + V +
Sbjct: 1317 IIPQAPVLFSGTVRFNL------DPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSE 1370
Query: 586 --DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-- 641
+ S GQ+Q +++ARA+LR IL+LDEAT+A+D ++ ++ KT R
Sbjct: 1371 AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQ----------KTIREE 1420
Query: 642 ----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKLVK 688
T+++IAHRL+TI DRI+V+D GR++E LL G ++K+V+
Sbjct: 1421 FKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQ 1472
|
Length = 1622 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 1e-31
Identities = 85/222 (38%), Positives = 120/222 (54%), Gaps = 18/222 (8%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-----YIDG-FPLTDLD 520
+L+ + L ++ EVVAI+G SGSGK+T + + L +P G I ID L+
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 521 --IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLP- 576
IR LR+ +GFV Q L + NI+ G P VK E E A +A E + +
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-PVIVKGEPKEEATARA--RELLAKVGL 134
Query: 577 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 636
G ET LSGGQ+QR+AIARA+ P ++L DE TSALD E V VL+ +R
Sbjct: 135 AGKETSYPRR-LSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVGEVLNTIRQL 190
Query: 637 CKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
+ KRT++++ H +S + V DR + +D GRI+E G L
Sbjct: 191 AQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232
|
Length = 250 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-31
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 62/221 (28%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ I+ + V L+ V L++ EV A++G +G+GKST + +L LY+P G+I
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 569
+DG +++ F P+D + I A V+
Sbjct: 58 LVDG------------KEVSFAS------------------PRDARRAGI------AMVY 81
Query: 570 EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL-DSESEHYVKG 628
+ LS G++Q + IARA+ R+ +L+LDE T+AL +E E
Sbjct: 82 Q-----------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVER---- 120
Query: 629 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 668
+ +R VI I+HRL + + DR+ V+ DGR++
Sbjct: 121 LFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 2e-31
Identities = 70/261 (26%), Positives = 112/261 (42%), Gaps = 50/261 (19%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL----YEPS 505
V+ + + F VP + V +E E++ IVG SGSGKST L+ L +
Sbjct: 8 VENLTVEFATDGGR-VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRIT 66
Query: 506 DGQIYIDGFPLTDLDIRWLRE----KIGFVGQEP-QLL--QMDIKSNI-------MYGCP 551
G++ +DG L L R +R+ +I + Q+P L M I I G
Sbjct: 67 SGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSR 126
Query: 552 KDVKNEDIEW---------AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602
+ + +E + Y H+ LSGG +QR+ IA A+
Sbjct: 127 AEARKRAVELLEQVGLPDPERRDRYPHQ-----------------LSGGMRQRVMIAMAL 169
Query: 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRT-VIVIAHRLSTIKAV-DRIV 660
P +L+ DE T+ALD ++ +L L++ + V+ I H L + + DR+V
Sbjct: 170 ALKPKLLIADEPTTALDVTTQ---AQILDLLKDLQRELGMAVLFITHDLGVVAELADRVV 226
Query: 661 VIDDGRIIEVGNHAELLHKGR 681
V+ G I+E G E+L +
Sbjct: 227 VMYKGEIVETGPTEEILSNPQ 247
|
Length = 539 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 7e-31
Identities = 75/227 (33%), Positives = 111/227 (48%), Gaps = 24/227 (10%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++F N+S YP V L+ V L I E + + G SG+GK+T + LL PS GQ+
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 510 YIDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIE 560
I G + L + LR +IG V Q+ +LL + N+ G + +
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 561 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
A +Q + + P + LSGG++QR+AIARAI+ P +LL DE T LD
Sbjct: 120 AALRQVGLEHKADAFP---------EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP 170
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD-RIVVIDDGR 666
+ +L L+ K TVIV H LS + V R++++DDGR
Sbjct: 171 ---DLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 1e-30
Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 18/229 (7%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N+ + + L+ + L I++ E+VA++G SG+GKST + ++ L P G+I ++G
Sbjct: 7 NVKKRFGAFGA---LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNG 63
Query: 514 FPLTDLDIRWLRE-KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 571
L D+ +R+ K+GFV Q L M + NI +G V+ E A +A V E
Sbjct: 64 RVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLK--VRKERPSEAEIRARVEE- 120
Query: 572 ILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 629
+L L E L D LSGGQ+QR+A+ARA+ +P +LLLDE ALD K +
Sbjct: 121 LLRL-VQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD---AKVRKEL 176
Query: 630 LHALRNDC--KTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAE 675
LR + T + + H ++ DR+VV++ GRI +VG E
Sbjct: 177 RRWLR-KLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224
|
Length = 345 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 2e-30
Identities = 68/259 (26%), Positives = 108/259 (41%), Gaps = 55/259 (21%)
Query: 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDG 507
+++SF + V ++ V ++ E++ IVG SGSGKS ++ L G
Sbjct: 7 LSVSFPTDAG-VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGG 65
Query: 508 QIYIDGFPLTDLD------IRWLREKIGFVGQEPQL-LQ--MDIKSNIMYGCPKDVKNED 558
+I DG L L IR ++I + Q+P L M I I K
Sbjct: 66 EILFDGKDLLSLSEKELRKIRG--KEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLS 123
Query: 559 IEWAAKQA------------------YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600
+ A ++A Y HE LSGG +QR+ IA
Sbjct: 124 KKEAKERAIELLELVGIPDPERRLKSYPHE-----------------LSGGMRQRVMIAM 166
Query: 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRI 659
A+ +P +L+ DE T+ALD + + +L L+ + +I+I H L + + DR+
Sbjct: 167 ALALNPKLLIADEPTTALDVTVQAQILDLLKELQR--EKGTALILITHDLGVVAEIADRV 224
Query: 660 VVIDDGRIIEVGNHAELLH 678
V+ GRI+E G E+
Sbjct: 225 AVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-30
Identities = 78/247 (31%), Positives = 134/247 (54%), Gaps = 12/247 (4%)
Query: 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
L G ++ ++ Y + P+L HV I+ + V I G +GSGKS+ R+ +
Sbjct: 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74
Query: 506 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 565
DG+I IDG ++ L + LR ++ + Q+P L I+ N+ P+ +D W A +
Sbjct: 75 DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLD---PECKCTDDRLWEALE 131
Query: 566 -AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622
A + + SLP G + +V + + S GQ+Q +ARA +R +IL++DEAT+++D +
Sbjct: 132 IAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT 191
Query: 623 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL-HKGR 681
E+ ++ V+ D RTV+ IAHR+STI D ++V+ G ++E LL +
Sbjct: 192 ENILQKVVMTAFAD----RTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDG 247
Query: 682 LYAKLVK 688
++A LV+
Sbjct: 248 VFASLVR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-30
Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 31/233 (13%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
V+ N++ + + + LN L I E V ++G SG GK+T + ++ L EP+ G+I
Sbjct: 1 VELENVTKRFGNVTALDDLN---LDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAA 563
YI G +TDL + I V Q L M + NI +G PKD +E + A
Sbjct: 58 YIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 564 KQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
+ +L + E L+D LSGGQ+QR+A+ RAI+R+P + L+DE S LD++
Sbjct: 116 E-------LLQI----EHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
Query: 622 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV---DRIVVIDDGRIIEVG 671
++ L L+ T T I + H ++A+ DRI V++DG+I ++G
Sbjct: 165 LRVQMRAELKRLQQRLGT--TTIYVTH--DQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 3e-30
Identities = 80/252 (31%), Positives = 122/252 (48%), Gaps = 45/252 (17%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ N+S YP+ L ++ L I E VAI+G SG+GKST + + RL EPS G I
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 510 YIDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIMYG----------CPKDVK 555
++G +T L +R LR +IG + Q L+ ++ + N+++G
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 556 NEDIEWA---------AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606
ED E A A +AY D LSGGQ+QR+AIARA+ + P
Sbjct: 120 EEDKERALSALERVGLADKAYQRA---------------DQLSGGQQQRVAIARALAQQP 164
Query: 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-TVIVIAHRLSTIKA-VDRIVVIDD 664
++L DE ++LD ++ V+ L+ K TVI+ H++ K DRIV +
Sbjct: 165 DLILADEPIASLDPKTSKQ---VMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKA 221
Query: 665 GRIIEVGNHAEL 676
G I+ G +EL
Sbjct: 222 GEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 3e-30
Identities = 77/251 (30%), Positives = 120/251 (47%), Gaps = 43/251 (17%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ N+S YP L V L I E+VAI+G SG+GKST + L L +P+ G+I
Sbjct: 4 IEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 510 YIDGFPLTDL---DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQ 565
+G +T L ++R LR IG + Q+ L+ + + N++ G +
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLG--------------RL 107
Query: 566 AYVHEF--ILSLPCGYETLVDDDL----------------LSGGQKQRIAIARAILRDPA 607
Y + + L + D LSGGQ+QR+AIARA+++ P
Sbjct: 108 GYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPK 167
Query: 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-TVIVIAHRLSTIKA-VDRIVVIDDG 665
I+L DE ++LD ES V+ L++ + TVIV H++ K DRI+ + G
Sbjct: 168 IILADEPVASLDPESAKK---VMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAG 224
Query: 666 RIIEVGNHAEL 676
RI+ G +EL
Sbjct: 225 RIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 3e-30
Identities = 61/210 (29%), Positives = 111/210 (52%), Gaps = 12/210 (5%)
Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 523
ILN++ L++ A E +AI G SG GKST + ++ L P+ G + +G ++ L
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 524 LREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 583
R+++ + Q P L ++ N+++ P ++N + AA + F L ++++
Sbjct: 75 YRQQVSYCAQTPALFGDTVEDNLIF--PWQIRNRRPDRAAALDLLARFALP-----DSIL 127
Query: 584 DDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
++ LSGG+KQRIA+ R + P ILLLDE TSALD ++ ++ ++H +
Sbjct: 128 TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVRE--QNV 185
Query: 642 TVIVIAH-RLSTIKAVDRIVVIDDGRIIEV 670
V+ I H + I+ D+++ + G E+
Sbjct: 186 AVLWITHDKDQAIRHADKVITLQPGHAGEM 215
|
Length = 223 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 4e-30
Identities = 70/216 (32%), Positives = 114/216 (52%), Gaps = 14/216 (6%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
L +V L +E + I+G +GSGKS + + +P G+I ++G +T+L +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRD 72
Query: 528 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 586
I +V Q L M + NI YG K K + E K V E L G + L++
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAYGL-KKRKVDKKEIERK---VLEIAEML--GIDHLLNRK 126
Query: 587 --LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644
LSGG++QR+AIARA++ +P ILLLDE SALD ++ ++ L +R + TV+
Sbjct: 127 PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV--TVL 184
Query: 645 VIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 679
+ H A+ D++ ++ +G++I+VG E+ K
Sbjct: 185 HVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 4e-30
Identities = 73/212 (34%), Positives = 118/212 (55%), Gaps = 12/212 (5%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
L+ V L + +VA++G SGSGKST + ++ L +P G+I ++G T + R K
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--DRK 73
Query: 528 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD- 585
IGFV Q L + + ++ NI +G ++ A +A V E +L L E L D
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFG----LEIRKHPKAKIKARVEE-LLEL-VQLEGLGDRY 127
Query: 586 -DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644
+ LSGGQ+QR+A+ARA+ +P +LLLDE ALD++ ++ L L ++ TV
Sbjct: 128 PNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVT-TVF 186
Query: 645 VIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 676
V + ++ DRIVV+ +G+I ++G+ E+
Sbjct: 187 VTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 7e-30
Identities = 71/229 (31%), Positives = 109/229 (47%), Gaps = 25/229 (10%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
V+ I F Y +P H LT E+ AIVG SGSGKST +NL+ P G++
Sbjct: 1 VRLDKIRFSYGEQPM-----HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-CP----KDVKNEDIEWAA 563
I+G +T + + QE L + ++ N+ G P + IE A
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 564 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
+ + LP LSGG++QR+A+AR ++RD +LLLDE +ALD
Sbjct: 114 ARVGLAGLEKRLP---------GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR 164
Query: 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
+ ++ L +TK TV+++ H+ K + R+V +D+GRI G
Sbjct: 165 AEMLDLVLDLHA--ETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 7e-30
Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 47/228 (20%)
Query: 452 FVNISF---HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL--LRLYEPSD 506
F N++ PS+ +L +V + E+ AI+G SG+GKST +N L R
Sbjct: 6 FRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVS 65
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQ 565
G++ I+G PL D R R+ IG+V Q+ L + ++ +M+ AAK
Sbjct: 66 GEVLINGRPL---DKRSFRKIIGYVPQDDILHPTLTVRETLMF-------------AAK- 108
Query: 566 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 625
L LSGG+++R++IA ++ +P++L LDE TS LDS S
Sbjct: 109 ---------LRG----------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQ 149
Query: 626 VKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDDGRIIEVG 671
V+ LR T RT+I H+ S+ + D+++++ GR+I G
Sbjct: 150 ---VMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-29
Identities = 68/228 (29%), Positives = 117/228 (51%), Gaps = 24/228 (10%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++F+N++ YP L+ + ++I A E V +VG SG+GKST + L+ + P+ G I
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 510 YIDGFPLTDLD---IRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIE 560
++G ++DL I +LR KIG V Q+ +LL ++ N+ + G P + +
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 561 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
A + + +LP LSGG++QR+AIARAI+ P IL+ DE T LD
Sbjct: 119 AALELVGLSHKHRALPAE---------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDP 169
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD-RIVVIDDGRI 667
+ +++ L+ K TV+V H + R++ ++ G++
Sbjct: 170 D---TTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-29
Identities = 68/201 (33%), Positives = 105/201 (52%), Gaps = 18/201 (8%)
Query: 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRWLREKIGFVGQE 534
EV I G SG+GKST + + L +P G I ++G L D +++ + KIG V Q+
Sbjct: 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ 83
Query: 535 PQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGG 591
L ++++ N+ +G + ED + V E + L G + L++ LSGG
Sbjct: 84 YALFPHLNVRENLAFGLKRKRNRED------RISVDELLDLL--GLDHLLNRYPAQLSGG 135
Query: 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 651
+KQR+A+ARA+ P +LLLDE SALD + L ++ + VI + H LS
Sbjct: 136 EKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNI--PVIFVTHDLS 193
Query: 652 TI-KAVDRIVVIDDGRIIEVG 671
DRIVV++DGR+ +G
Sbjct: 194 EAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 6e-29
Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 11/230 (4%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ N+S + L+ V L I + E+VA++G SGSGK+T + L+ L P G I
Sbjct: 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYV 568
G TD+ ++ +GFV Q L + M + N+ +G ++E A +A V
Sbjct: 60 LFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKV 117
Query: 569 HEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
HE +L L + L D LSGGQ+QR+A+ARA+ +P +LLLDE ALD++ +
Sbjct: 118 HE-LLKL-VQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL 175
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 676
+ L L ++ TV V + ++ DR+VV++ GRI +VG E+
Sbjct: 176 RRWLRRLHDELHVT-TVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 7e-29
Identities = 74/213 (34%), Positives = 109/213 (51%), Gaps = 22/213 (10%)
Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 532
LT+ A E+VAI+G SG+GKST +NL+ P+ G+I I+G T + +
Sbjct: 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSMLF 77
Query: 533 QEPQLL-QMDIKSNIMYGCPKDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDD 586
QE L + + NI G +K E +E AA Q + F+ LP
Sbjct: 78 QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP---------G 128
Query: 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC-KTKRTVIV 645
LSGGQ+QR+A+AR ++R+ ILLLDE SALD +L + C + K T+++
Sbjct: 129 ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA---EMLALVSQLCDERKMTLLM 185
Query: 646 IAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
+ H + DR+V +D+GRI G+ ELL
Sbjct: 186 VTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-28
Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 19/238 (7%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
+ F N+SF Y S + L V I + +IVG +GSGKST L++ + + G+I
Sbjct: 8 IVFKNVSFQYQSDASF-TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYG-----CPKDVKNEDIEWA 562
+ + +TD + LR+ IG V Q P Q + +K ++ +G P D + + A
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126
Query: 563 AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622
KQ + E P + LSGGQKQR+AIA + +P++++LDEATS LD ++
Sbjct: 127 LKQVDMLERADYEP---------NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDA 177
Query: 623 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 680
+ ++ ++++ T+I I H LS D ++V++ G + + G E+
Sbjct: 178 RQNLLDLVRKVKSEHNI--TIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
|
Length = 269 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 2e-28
Identities = 76/225 (33%), Positives = 109/225 (48%), Gaps = 21/225 (9%)
Query: 454 NISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512
+I YPS V +L + L I A E+VAIVG SGSGKST +N+L L +P+ G +
Sbjct: 9 DIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVA 68
Query: 513 GFPLTDLD----IRWLREKIGFVGQEPQLL-QMDIKSNI----MYGCPKDVKNEDIEWAA 563
G + LD + RE GF+ Q LL + N+ +Y +E
Sbjct: 69 GQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA--------GLERKQ 120
Query: 564 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
+ E + L LSGGQ+QR++IARA++ ++L DE T ALDS S
Sbjct: 121 RLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180
Query: 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 668
V +LH LR+ TVI++ H +R++ I DG I+
Sbjct: 181 EEVMAILHQLRDR---GHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 73/244 (29%), Positives = 122/244 (50%), Gaps = 34/244 (13%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ ++ + R IL+ V L + E++AI+G SGSGKST + L+L L P G+I
Sbjct: 9 IEVRGVTKSFGDRV---ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 510 YIDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIMY------GCPKDVKNEDI 559
IDG + L ++ +R+++G + Q+ L + + N+ + P+ + E +
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 560 EWAAKQAYVHEFILSL-PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 618
+ + L P E LSGG ++R+A+ARAI DP +L LDE TS L
Sbjct: 126 LMKLELVGLRGAAADLYP--SE-------LSGGMRKRVALARAIALDPELLFLDEPTSGL 176
Query: 619 D----SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNH 673
D + ++ + AL TVI++ H L ++ + DR+ V+ DG++I G
Sbjct: 177 DPISAGVIDELIRELNDALGL------TVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230
Query: 674 AELL 677
ELL
Sbjct: 231 EELL 234
|
Length = 263 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-28
Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 10/127 (7%)
Query: 492 STFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLREKIGFVGQEPQL-LQMDIKSNIMYG 549
ST + L+ L +P+ G I +DG T L + LR++IG V Q+PQL ++ ++ N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609
+ E A ++ + +F+ P G LSGGQKQR+AIARA+L+ P +L
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVGT--------LSGGQKQRVAIARALLKKPKLL 112
Query: 610 LLDEATS 616
LLDE T+
Sbjct: 113 LLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-28
Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 37/233 (15%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS---DGQIYIDGFPL--TDLD 520
L + L IE N+V A++G SG GKSTF+ L R+ + PS +G++ +DG + +D+D
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-------KDVKNEDIEWAAKQAYVHEFIL 573
+ LR+++G V Q+P M I N+ YG P K +E +E + K A + +
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYG-PRTHGIKDKKKLDEIVEKSLKGAALWD--- 134
Query: 574 SLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
V D L LSGGQ+QR+ IARA+ +P +LL+DE TSALD S ++
Sbjct: 135 --------EVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIE 186
Query: 628 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 679
L + K T++++ H + + D+ +G I+E G+ +L
Sbjct: 187 ----ELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235
|
Length = 250 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 9e-28
Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 23/234 (9%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ N+S Y L+ V L I+ E ++G SG GK+T + L+ P+ G+I
Sbjct: 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIEWAA 563
+DG +T+L + + V Q L + + NI +G PK E + A
Sbjct: 58 LLDGKDITNLPPH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 564 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
+ + P LSGGQ+QR+AIARA++ +P +LLLDE ALD +
Sbjct: 116 DLVQLEGYANRKP---------SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166
Query: 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 676
++ L L+ + T + + H + DRI V++ G+I ++G E+
Sbjct: 167 KDMQLELKRLQKELGI--TFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 86/264 (32%), Positives = 126/264 (47%), Gaps = 46/264 (17%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P--- 504
+Q N++F+Y L ++ L I N+V A +G SG GKST + R+YE P
Sbjct: 14 IQVRNLNFYYGKFHA---LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQR 70
Query: 505 SDGQIYIDGFPL--TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKN 556
++G+I +DG + DI LR K+G V Q+P M I NI +G + +
Sbjct: 71 AEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMD 130
Query: 557 EDIEWAAKQAYV-HEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAIL 609
E +EWA +A + +E V D L LSGGQ+QR+ IAR I P +L
Sbjct: 131 ERVEWALTKAALWNE------------VKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVL 178
Query: 610 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 668
LLDE SALD S ++ ++ L K TV+++ H + D + G +I
Sbjct: 179 LLDEPCSALDPISTGRIEELITEL----KQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234
Query: 669 EVGNHAELLHKGRLYAKLVKRQTE 692
E GN ++ K K+QTE
Sbjct: 235 EFGNTD------TIFTKPAKKQTE 252
|
Length = 260 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 1e-27
Identities = 79/217 (36%), Positives = 120/217 (55%), Gaps = 22/217 (10%)
Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLDIRWL-REKI 528
L IE E+ I+GLSGSGKST V LL RL EP+ GQ+ IDG ++D ++R + R+KI
Sbjct: 49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108
Query: 529 GFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 582
V Q L+ M + N + G + + E A +Q + + S P
Sbjct: 109 AMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP------ 162
Query: 583 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRT 642
D LSGG +QR+ +ARA+ +P ILL+DEA SALD ++ L L+ K +RT
Sbjct: 163 ---DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQ--AKHQRT 217
Query: 643 VIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELLH 678
++ I+H L ++ DRI ++ +G +++VG E+L+
Sbjct: 218 IVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN 254
|
Length = 400 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 1e-27
Identities = 75/231 (32%), Positives = 115/231 (49%), Gaps = 23/231 (9%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
+SF Y +R L+ V T+ VA++G +G+GKST +LL RLY +GQI + G
Sbjct: 6 GLSFRYGARRA---LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAG 62
Query: 514 FPLTDLDIRWLREKIGFVGQEPQL-LQMDIKSNIMY-----GCPKDVKNEDIEWAAKQAY 567
L L ++G V Q+P L L + ++ N+ Y G + I +
Sbjct: 63 HDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLAR-- 119
Query: 568 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
L L + V + L+GG ++R+ IARA+L PA+LLLDE T LD S +
Sbjct: 120 -----LGLAERADDKVRE--LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172
Query: 628 GVLHALRNDCKTKR-TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677
+ AL + + +V+ H + I+A DR+VV+ GR++ G AEL
Sbjct: 173 AHVRAL---ARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 2e-27
Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 8/226 (3%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N+ F Y V LN V +I E V+I+G +GSGKST L+ L+E +G++ IDG
Sbjct: 9 NLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDG 68
Query: 514 FPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 571
LT ++ LR KIG V Q P Q + ++ ++ +G ++N+ I V E
Sbjct: 69 ELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFG----MENQGIPREEMIKRVDEA 124
Query: 572 ILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 631
+L++ + LSGGQKQR+A+A I P I++LDE+TS LD + V+H
Sbjct: 125 LLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIH 184
Query: 632 ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677
++ K + TV+ I H L + DRI+V+ G II+ +EL
Sbjct: 185 EIKE--KYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-27
Identities = 68/219 (31%), Positives = 109/219 (49%), Gaps = 21/219 (9%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
NISF Y IL+ + L + A E++A+ G +G+GK+T +L L + S G I ++G
Sbjct: 4 NISFSYKKGTE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 514 FPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHE 570
+ + R+ IG+V Q+ QL ++ ++ G D NE E K ++
Sbjct: 62 ---KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA 118
Query: 571 FILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 630
P LSGGQKQR+AIA A+L +L+ DE TS LD ++ ++ V
Sbjct: 119 LKERHPLS---------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKN---MERVG 166
Query: 631 HALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRII 668
+R + VIVI H + K DR++++ +G I+
Sbjct: 167 ELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 2e-27
Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 20/221 (9%)
Query: 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRWLRE 526
T+ V AI G SGSGK+T + L+ L P +G+I ++G L D + + +
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 527 KIGFVGQEPQLL-QMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 584
+IG+V QE +L + ++ N+ YG + I + ++ L G L+
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFER--------VIEL-LGIGHLLG 126
Query: 585 D--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRT 642
LSGG+KQR+AI RA+L P +LL+DE +ALD ++ + L L +
Sbjct: 127 RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAE--FGIP 184
Query: 643 VIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKGRL 682
++ ++H L + + DR+VV++DGR+ G AE+ L
Sbjct: 185 ILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-27
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 11/210 (5%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---- 520
+ IL V L ++ E VAIVG SGSGKST + +L L +PS G++ + G PL LD
Sbjct: 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82
Query: 521 IRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 579
+GFV Q L+ + N+ P +++ E + A + ++ G
Sbjct: 83 AALRARHVGFVFQSFHLIPNLTALENVA--LPLELRGESSADSRAGA--KALLEAVGLGK 138
Query: 580 ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 639
LSGG++QR+A+ARA P +L DE T LD + + +L AL + T
Sbjct: 139 RLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGT 198
Query: 640 KRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 669
T++++ H DR + + GR++E
Sbjct: 199 --TLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 3e-27
Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 41/232 (17%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL---DI 521
IL V LT+ E+VA++G +G+GK+T + ++ L P G I DG +T L +
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER 72
Query: 522 RWLREKIGFVGQEPQLL-QMDIKSNIM---YGCPKDVKNEDIEWAAKQAYVHEFILSL-- 575
R IG+V + ++ ++ ++ N++ Y + + +E + L
Sbjct: 73 --ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLER----------VYELFP 120
Query: 576 --------PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
G LSGG++Q +AIARA++ P +LLLDE + L + V+
Sbjct: 121 RLKERRKQLAG--------TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVE 169
Query: 628 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 678
+ A+R T++++ + DR V++ GR++ G AELL
Sbjct: 170 EIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 3e-27
Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 21/218 (9%)
Query: 463 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 522
P V + V L+++ E+ A++G +G+GKST + +L LY+P G+I +DG +R
Sbjct: 15 PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKE-----VR 69
Query: 523 W------LREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI--L 573
+R IG V Q L+ + + NI+ G K I+ +A + E
Sbjct: 70 IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPS-KGGLIDRRQARARIKELSERY 128
Query: 574 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 633
LP + V D LS G++QR+ I +A+ R +L+LDE T+ L + E + L
Sbjct: 129 GLPVDPDAKVAD--LSVGEQQRVEILKALYRGARLLILDEPTAVL-TPQE--ADELFEIL 183
Query: 634 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEV 670
R +T+I I H+L + A+ DR+ V+ G+++
Sbjct: 184 RRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT 221
|
Length = 501 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 4e-27
Identities = 63/230 (27%), Positives = 112/230 (48%), Gaps = 18/230 (7%)
Query: 458 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517
Y V + V E E+ ++G +G+GK+T + ++ L P G++ IDG
Sbjct: 10 SYG--SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTV 67
Query: 518 DLDIRWLREKIGFV-GQEPQLLQMDIKSNIMY-GCPKDVKNEDIEWAAKQAYVHEFILSL 575
D ++R KIG + G+ ++ + N+ Y + ++I+ A + E L
Sbjct: 68 R-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIK-----ARIAELSKRL 121
Query: 576 PCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 633
+D + S G KQ++AIARA++ DP+IL+LDE TS LD + + L
Sbjct: 122 --QLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQL 179
Query: 634 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRL 682
+N+ R VI +H + ++A+ DR++V+ G ++ G+ L + L
Sbjct: 180 KNE---GRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVL 226
|
Length = 245 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 8e-27
Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 18/216 (8%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--DIRWLR 525
L+ V ++ E+ ++G +G+GK+T NL+ P+ G + DG +T L R
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIA-R 74
Query: 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQ------AYVHEFILSLPCG 578
IG Q P+L + + N+M + + A++ E +L G
Sbjct: 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEE-LLER-VG 132
Query: 579 YETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 636
L D LS GQ++R+ IARA+ DP +LLLDE + L+ E + ++ LR
Sbjct: 133 LADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER 192
Query: 637 CKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
TV+++ H + + ++ DR+ V+D GR+I G
Sbjct: 193 ---GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEG 225
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 8e-27
Identities = 74/247 (29%), Positives = 126/247 (51%), Gaps = 32/247 (12%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS-- 505
++ N S +Y + V +V + I N++ AI+G SG GK+T + + R+ + P
Sbjct: 4 IEIENFSAYYGEKKAV---KNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 506 -DGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP------KDVKN 556
+G+IY G + D LD+ R+K+G V Q+P M I N+ +G K +
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 557 EDIEWAAKQAYVHEFI---LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDE 613
+E + K+A + + + L+ P G LSGGQ+QR+ IARA+ +P ++LLDE
Sbjct: 121 RIVEESLKKAALWDEVKSELNKP-GTR-------LSGGQQQRLCIARALAVEPEVILLDE 172
Query: 614 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGN 672
TSALD + ++ +L L T++++ H + I+ D I + G +IE G
Sbjct: 173 PTSALDPIATQRIEKLLEELSE----NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGP 228
Query: 673 HAELLHK 679
E++ +
Sbjct: 229 TREIVER 235
|
Length = 250 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 77/246 (31%), Positives = 119/246 (48%), Gaps = 43/246 (17%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTD--LD 520
L + + I N V A +G SG GKST + R+ + D G+I +DG + D +D
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100
Query: 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKNEDIEWAAKQAYV-HEFIL 573
+ LR ++G V Q P I N++YG + V +E +E + + A + E
Sbjct: 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDE--- 157
Query: 574 SLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
V D L LSGGQ+QR+ IARAI +P +LLLDE TSALD S ++
Sbjct: 158 ---------VKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIE 208
Query: 628 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYAKL 686
++ L K+K T++++ H + V D + G+++E G+ L+
Sbjct: 209 ELITEL----KSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGD------TDTLFTSP 258
Query: 687 VKRQTE 692
K+QTE
Sbjct: 259 AKKQTE 264
|
Length = 272 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-26
Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 21/232 (9%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M + F + ++ V T++ EV ++G +G+GK+T + +L L EP
Sbjct: 1 MITADALTKRFRDVKKTVQ-AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA 59
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNI-----MYGCPKDVKNEDIE 560
G +DGF + R ++GFV L ++ + N+ +YG D +E
Sbjct: 60 GFATVDGFD-VVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLE 118
Query: 561 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
A + + E + + V S G +Q++AIARA++ DP +LLLDE T+ LD
Sbjct: 119 ELADRLGMEELL-------DRRVGG--FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV 169
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
+ ++ + LR K ++ H + ++ + DR+VV+ GR++ G
Sbjct: 170 MATRALREFIRQLRALGK---CILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-26
Identities = 61/235 (25%), Positives = 116/235 (49%), Gaps = 37/235 (15%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
+Q N++ Y + L+ V LT+ + ++G +G+GK+T + +L L PS G I
Sbjct: 1 LQLENLTKRYGKKR---ALDGVSLTLG-PGMYGLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI-----------MYGCP-KDVKNE 557
IDG + + LR +IG++ QE + N + G P K+VK
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEF-----GVYPNFTVREFLDYIAWLKGIPSKEVKAR 110
Query: 558 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 617
++ + + + + + LSGG ++R+ IA+A++ DP+IL++DE T+
Sbjct: 111 -VDEVLELVNLGDR-------AKKKIGS--LSGGMRRRVGIAQALVGDPSILIVDEPTAG 160
Query: 618 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
LD E + +L L D R VI+ H + ++++ +++ V++ G+++ G
Sbjct: 161 LDPEERIRFRNLLSELGED----RIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-26
Identities = 87/257 (33%), Positives = 122/257 (47%), Gaps = 31/257 (12%)
Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPS- 505
H N++ Y S+ IL + L I EV A +G SG GKSTF+ R+ + P+
Sbjct: 5 HASVKNLNLWYGSKQ---ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNC 61
Query: 506 --DGQIYIDGFPL--TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK---DVKNED 558
G++ IDG + D ++ LR K+G V Q+P I N+ YG PK KN+
Sbjct: 62 KVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYG-PKLHGLAKNKK 120
Query: 559 IEWAAKQAYVHEFILSLPCGYETLVD---DDL--LSGGQKQRIAIARAILRDPAILLLDE 613
K + E L+ +E L D D LSGGQ+QR+ IARAI P +LL+DE
Sbjct: 121 -----KLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDE 175
Query: 614 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 672
SALD V+ L + K T+IV+ H + K V DR+ GRI+E
Sbjct: 176 PCSALDP----VATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231
Query: 673 HAELLHKGRLYAKLVKR 689
E+ + + KR
Sbjct: 232 TQEIFKNPQ--SSKTKR 246
|
Length = 251 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 4e-26
Identities = 63/213 (29%), Positives = 114/213 (53%), Gaps = 22/213 (10%)
Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRWLREKI 528
T+ A + A+ G SGSGK++ +N++ L P +G+I ++G L D + + + +I
Sbjct: 19 FTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRI 78
Query: 529 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-- 585
G+V Q+ +L ++ N+ YG W + +A + + L G E L+D
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYG----------MWKSMRAQFDQLVALL--GIEHLLDRYP 126
Query: 586 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 645
LSGG+KQR+AI RA+L P +LL+DE ++LD + + L LR++ ++
Sbjct: 127 GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDE--INIPILY 184
Query: 646 IAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELL 677
++H L + + DR+VV+++G++ G E+
Sbjct: 185 VSHSLDEVLRLADRVVVLENGKVKASGPLEEVW 217
|
Length = 352 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 4e-26
Identities = 71/245 (28%), Positives = 131/245 (53%), Gaps = 24/245 (9%)
Query: 450 VQFVNISFHYPSRPTVPI----LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
++F N+S+ Y + P ++ V E + AIVG +GSGKST + + L +P+
Sbjct: 3 IRFDNVSYTY--QKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT 60
Query: 506 DGQIYIDGFPLT----DLDIRWLREKIGFVGQ--EPQLLQMDIKSNIMYGCPKDVKNEDI 559
G + +D +T D IR +R++IG V Q E QL + ++ I++G PK+ ++
Sbjct: 61 TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFG-PKNF-KMNL 118
Query: 560 EWAAKQAYVHEFILSLPCGYETLVDDD---LLSGGQKQRIAIARAILRDPAILLLDEATS 616
+ + Y H ++ L G+ V +SGGQ ++IAI + +P I++LDE T+
Sbjct: 119 DEV--KNYAHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTA 174
Query: 617 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAE 675
LD +S+ V +L +L+ D +T+I+++H ++ + + D ++V+ +G I+ + E
Sbjct: 175 GLDPQSKRQVMRLLKSLQTD--ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232
Query: 676 LLHKG 680
L
Sbjct: 233 LFKDK 237
|
Length = 286 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 5e-26
Identities = 73/231 (31%), Positives = 113/231 (48%), Gaps = 43/231 (18%)
Query: 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLREK 527
+ LT+ + + +VG SGSGKST LLRL PS G+I DG + L +R LR +
Sbjct: 306 ISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-PSQGEIRFDGQDIDGLSRKEMRPLRRR 364
Query: 528 IGFVGQEP-----------QLLQMDIKSNIMYGCPKDVKNEDIEW--------AAKQAYV 568
+ V Q+P Q+++ ++ + + IE A + Y
Sbjct: 365 MQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP 424
Query: 569 HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 628
HEF SGGQ+QRIAIARA++ P ++LLDE TSALD + V
Sbjct: 425 HEF-----------------SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLD 467
Query: 629 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 678
+L L+ K + + I+H L+ ++A+ R++V+ DG+I+E G +
Sbjct: 468 LLRDLQQ--KHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 8e-26
Identities = 74/254 (29%), Positives = 127/254 (50%), Gaps = 27/254 (10%)
Query: 454 NISFHY---PSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510
N+S+ Y L+ V L ++ E + I+G +GSGKST + L PS+G++Y
Sbjct: 9 NVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVY 68
Query: 511 IDGFPLTDLDIRW-LREKIGFVGQEP--QLLQMDIKSNIMYG------CPKDVKNEDIEW 561
+DG +D + W +R K G V Q P Q++ ++ ++ +G P++++ E ++
Sbjct: 69 VDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIR-ERVDE 127
Query: 562 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
+ K+ ++E+ P LLSGGQKQR+AIA + P ++ DE T+ LD
Sbjct: 128 SLKKVGMYEYRRHAP---------HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178
Query: 622 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGR 681
V + L K T+I+I H + DRI+V+D G+++ G E+ +
Sbjct: 179 GRREVVNTIKELNK--KYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKEVE 236
Query: 682 LYAKL---VKRQTE 692
+ K+ V + TE
Sbjct: 237 MMKKIGLDVPQVTE 250
|
Length = 280 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 8e-26
Identities = 60/237 (25%), Positives = 118/237 (49%), Gaps = 28/237 (11%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
+Q N++ Y P ++ + L + E+ ++G +G+GK+T + +L P+ G
Sbjct: 1 LQIRNLTKTYKKGT-KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQ----LLQMDIKSNIMY-----GCPKDVKNEDIE 560
YI+G+ + D + R+ +G+ PQ ++ ++ ++ + G PK E++E
Sbjct: 60 YINGYSIRT-DRKAARQSLGYC---PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVE 115
Query: 561 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
+ L L LSGG K+++++A A++ P++LLLDE TS LD
Sbjct: 116 LLLRV-------LGLTDKANKRART--LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDP 166
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 676
S + ++ +R R++I+ H + +A+ DRI ++ DG++ +G+ EL
Sbjct: 167 ASRRAIWDLILEVR----KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 1e-25
Identities = 76/240 (31%), Positives = 126/240 (52%), Gaps = 31/240 (12%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD 520
L+ + L E N+V A++G SG GKSTF+ L R+ + +G+I +DG + D +D
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKN-----EDIEWAAKQAYVHEFILS 574
+ LR ++G V Q+P I N+ YG VK+ E +E + + A + + +
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-- 139
Query: 575 LPCGYETLVDDDL-LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 633
+ L + L LSGGQ+QR+ IARA+ +P +LL+DE SALD + ++ ++H L
Sbjct: 140 ----KDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL 195
Query: 634 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 692
K + T+I++ H + V D G++IEVG ++ + R ++QTE
Sbjct: 196 ----KARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRPR------EKQTE 245
|
Length = 253 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 1e-25
Identities = 76/220 (34%), Positives = 113/220 (51%), Gaps = 23/220 (10%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--L 519
IL +V L I N V A++G SG GKSTF+ L R+ + +G IY+DG + D +
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 579
D+ LR+K+G V Q+P I N+ YG + ED E ++ V E + +
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGL--RIHGEDDEDFIEER-VEESLKAAALWD 134
Query: 580 ETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 633
E V D L LSGGQ+QR+ IAR I P ++L+DE SALD S ++ ++H L
Sbjct: 135 E--VKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL 192
Query: 634 RNDCKTKRTVIVIAHRLSTIKAVDRIV-VIDDGRIIEVGN 672
+ D T++++ H + V + +G IIE G
Sbjct: 193 KED----YTIVIVTHNMQQATRVSKYTSFFLNGEIIESGL 228
|
Length = 250 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 1e-25
Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 37/231 (16%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPL--TDLD 520
LN + L I N++ A++G SG GKSTF+ L R+ + G++ +DG + D+D
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-----KDVKNED--IEWAAKQAYVHEFIL 573
+ LR+++G V Q+P M I N+ YG P KD K D +EWA K+A + +
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYG-PRIHGIKDKKELDKIVEWALKKAALWD--- 135
Query: 574 SLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
V DDL LSGGQ+QR+ IAR I P ++L+DE TSALD S ++
Sbjct: 136 --------EVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIE 187
Query: 628 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
++ L+ + T++++ H + V D G +IE ++
Sbjct: 188 DLMVELKKE----YTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234
|
Length = 251 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-25
Identities = 67/211 (31%), Positives = 114/211 (54%), Gaps = 11/211 (5%)
Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL---D 520
+L V L+I E+VAIVG SGSGKST ++LL L P+ G++ +G L+ L +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 521 IRWLR-EKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 578
LR +K+GF+ Q LL N+ P + + ++ A ++AY E + +
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAM--PLLIGKKSVKEAKERAY--EMLEKVGLE 132
Query: 579 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638
+ LSGG++QR+AIARA++ P+++L DE T LD+ + + ++ L +
Sbjct: 133 HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELN 192
Query: 639 TKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 669
T + +V+ H L K +DR++ + DG++
Sbjct: 193 T--SFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-25
Identities = 56/213 (26%), Positives = 111/213 (52%), Gaps = 19/213 (8%)
Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 523
V L+ + ++E E+ ++G +G+GK+T + ++L + P G++ DG PL
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAA--- 68
Query: 524 LREKIGFVGQEPQLLQ-MDIKSNIMY-GCPKDVKNEDIEWAAKQA--YVHEFILSLPCGY 579
R +IG++ +E L M + ++Y K +K E+ A ++ ++ LS Y
Sbjct: 69 -RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE---ARRRIDEWLERLELS---EY 121
Query: 580 ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 639
++ LS G +Q++ A++ DP +L+LDE S LD + +K V+ L +
Sbjct: 122 ANKRVEE-LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELA---RA 177
Query: 640 KRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
+TVI+ H++ ++ + DR+++++ GR + G
Sbjct: 178 GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 3e-25
Identities = 73/240 (30%), Positives = 120/240 (50%), Gaps = 22/240 (9%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SD 506
V+F ++SF YP P LN + +I A++G +GSGKST L+ L P +
Sbjct: 6 VEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYG-----CPKDVKNEDI 559
+I +DG LT + +REK+G V Q P Q + + ++ +G P+ + +
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 560 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619
+ ++I S P LSGGQKQR+AIA + +P I++LDE+TS LD
Sbjct: 125 RDVLADVGMLDYIDSEPAN---------LSGGQKQRVAIAGILAVEPKIIILDESTSMLD 175
Query: 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 679
+ + ++ L+ TVI I H + D+++V+DDG+++ G+ E+ K
Sbjct: 176 PAGKEQILKLIRKLKKK--NNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
|
Length = 282 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-25
Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 24/231 (10%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M + ++S Y +P L V LTI + E+V ++G SG GK+T +NL+ PS
Sbjct: 1 MCMLNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR 59
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQ 565
G I ++G + G V Q LL +++ N+ +G ++ IE A ++
Sbjct: 60 GSIQLNGRRIEGPGAER-----GVVFQNEALLPWLNVIDNVAFG----LQLRGIEKAQRR 110
Query: 566 AYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
H+ + + G E + LSGG +QR+ IARA+ +P +LLLDE ALD+ +
Sbjct: 111 EIAHQMLALV--GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTR 168
Query: 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV---DRIVVID--DGRIIE 669
++ +L L + T + V++I H + +A+ R+VV+ GR++E
Sbjct: 169 EQMQELLLDLWQE--TGKQVLLITHDIE--EALFLATRLVVLSPGPGRVVE 215
|
Length = 259 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 7e-25
Identities = 65/206 (31%), Positives = 106/206 (51%), Gaps = 20/206 (9%)
Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 532
L + E+VAI+G SG+GKST +NL+ EP+ G I ++ T L + + +
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPY--QRPVSMLF 76
Query: 533 QEPQLL-QMDIKSNIMYGCPKDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDD 586
QE L + ++ NI G +K E + AA+Q + +++ LP +
Sbjct: 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP---------E 127
Query: 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVI 646
LSGGQ+QR+A+AR ++R ILLLDE SALD + ++ L ++ +RT++++
Sbjct: 128 QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE--RQRTLLMV 185
Query: 647 AHRLS-TIKAVDRIVVIDDGRIIEVG 671
H LS +I V+ G+I V
Sbjct: 186 THHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-24
Identities = 75/239 (31%), Positives = 126/239 (52%), Gaps = 18/239 (7%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M + + FH ++ T+ LN+V L + A ++ ++G SG+GKST + + L P+
Sbjct: 1 MIKLSNITKVFHQGTK-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTS 59
Query: 507 GQIYIDGFPLTDL---DIRWLREKIGFVGQEPQLLQMDIKSNIMYG---CPKDVKNEDIE 560
G + +DG LT L ++ R +IG + Q LL S ++G P ++ N +
Sbjct: 60 GSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS----SRTVFGNVALPLELDNTPKD 115
Query: 561 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
++ V E + + G + LSGGQKQR+AIARA+ +P +LL DEATSALD
Sbjct: 116 EIKRK--VTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
Query: 621 ESEHYVKGVLHALRNDCKT-KRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
+ + +L L+ + T+++I H + +K + D + VI +G +IE G +E+
Sbjct: 174 AT---TQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 79/244 (32%), Positives = 122/244 (50%), Gaps = 32/244 (13%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS-- 505
+Q ++S +Y + LN V L NE+ A++G SGSGKST + + R+ + P
Sbjct: 6 LQVSDLSVYYNKKKA---LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT 62
Query: 506 -DGQIYIDGF----PLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDV 554
G I +G P TD LR++IG V Q+P M I N++YG K V
Sbjct: 63 ITGSIVYNGHNIYSPRTD--TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQV 120
Query: 555 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL-LSGGQKQRIAIARAILRDPAILLLDE 613
+E +E + K A + + + + L D L LSGGQ+QR+ IAR + P I+LLDE
Sbjct: 121 LDEAVEKSLKGASIWDEV------KDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDE 174
Query: 614 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 672
TSALD S ++ L L++D T++++ + + DR DG +IE +
Sbjct: 175 PTSALDPISAGKIEETLLGLKDD----YTMLLVTRSMQQASRISDRTGFFLDGDLIEYND 230
Query: 673 HAEL 676
++
Sbjct: 231 TKQM 234
|
Length = 252 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 3e-24
Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 33/230 (14%)
Query: 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510
+ ++ L + I E V I+G +G+GKST + L+ +Y+P+ G++
Sbjct: 26 RLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVK 85
Query: 511 IDG--FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI-----MYGCPKDVKNEDIEWAA 563
+ G PL +L G +P+L + NI + G + +E ++
Sbjct: 86 VTGKVAPLIELG----------AGFDPELTGRE---NIYLRGLILGLTRKEIDEKVDEII 132
Query: 564 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
+ A + +FI P S G R+A + A +P ILLLDE + D+ +
Sbjct: 133 EFAELGDFI-DQPVKT--------YSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQ 183
Query: 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 672
L+ L + +T+++++H L IK DR + ++ G+I G+
Sbjct: 184 EKCLERLNELV---EKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 4e-24
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 26/222 (11%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
++ V + EV +G +G+GK+T + +L L P+ G + G+ + + R +R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRS 67
Query: 528 IGFVGQEPQLLQMDIK----SNIM-----YGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 578
IG V Q + D N+ YG PKD E E + + E
Sbjct: 68 IGIVPQYASV---DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGT 124
Query: 579 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638
Y SGG ++R+ IA +++ P +L LDE T+ LD + + + AL+ +
Sbjct: 125 Y---------SGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK---E 172
Query: 639 TKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 679
T+++ H + + DRI +ID GRII G EL +
Sbjct: 173 EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 4e-24
Identities = 53/238 (22%), Positives = 95/238 (39%), Gaps = 36/238 (15%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ N+S + IL + + E AIVG +G+GK+T ++LL + PS G +
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 510 YIDGFPLTDLDIRW-LREKIGFVGQEPQLLQMDIKSNI---------------MYGCPKD 553
+ G + + LR++IG V E L + +Y
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSE---LHERFRVRETVRDVVLSGFFASIGIYQEDLT 145
Query: 554 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLL 611
+ AA Q + L D LS G+++R+ IARA+++DP +L+L
Sbjct: 146 ----AEDLAAAQWLLELLGAK------HLADRPFGSLSQGEQRRVLIARALVKDPELLIL 195
Query: 612 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 668
DE LD + + L L ++ + H I +++ +G ++
Sbjct: 196 DEPAQGLDLIAREQLLNRLEELAAS-PGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 99.4 bits (249), Expect = 5e-24
Identities = 55/206 (26%), Positives = 96/206 (46%), Gaps = 45/206 (21%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLRE 526
+ V + A E+V I GL G+G++ L L P+ G+I +DG P+T R +R
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 527 KIGFVGQEPQ----LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 582
I +V ++ + +L + + NI +L
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENI---------------------------ALSS----- 103
Query: 583 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRT 642
LLSGG +Q++ +AR + RDP +L+LDE T +D ++ + ++ L + K
Sbjct: 104 ----LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGK---A 156
Query: 643 VIVIAHRLSTIKAV-DRIVVIDDGRI 667
V++I+ L + + DRI+V+ +GRI
Sbjct: 157 VLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 7e-24
Identities = 72/243 (29%), Positives = 118/243 (48%), Gaps = 25/243 (10%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
V+F +++ + + +L+ + ++ A E VA++G SGSGKST + +L+ L +GQI
Sbjct: 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI 57
Query: 510 YIDG-------------FPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVK 555
++G P + +R +R KIG V Q L + N+ P V
Sbjct: 58 QVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEA-PVLVL 116
Query: 556 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 615
+ A + E + + + LSGGQ+QR+AIARA+ P ++L DE T
Sbjct: 117 G--MARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVT 174
Query: 616 SALDSESEHYVKGVLHALRNDC-KTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNH 673
SALD E V VL+ +R + T++++ H + + DR+ D GRI+E G
Sbjct: 175 SALDPE---LVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKP 231
Query: 674 AEL 676
E+
Sbjct: 232 DEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 48/237 (20%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL---TDLD--- 520
+L V L A +V++I+G SGSGKSTF+ + L +PS G I ++G + D D
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 521 -------IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDV----KNEDIEWAAK---Q 565
++ LR ++G V Q L M + N++ P V K E IE A K +
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIE-APVHVLGVSKAEAIERAEKYLAK 139
Query: 566 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 625
+ E + P LSGGQ+QR+AIARA+ +P ++L DE TSALD E
Sbjct: 140 VGIAEKADAYPA---------HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE---L 187
Query: 626 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRL 682
V VL +++ + RT++V+ H + + +V +H LH+G++
Sbjct: 188 VGEVLKVMQDLAEEGRTMVVVTHEMGFAR--------------DVSSHVIFLHQGKI 230
|
Length = 256 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 75/246 (30%), Positives = 116/246 (47%), Gaps = 47/246 (19%)
Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS- 505
V F FH L + + IE VVA +G SG GKSTF+ L R+ + P+
Sbjct: 8 DVNFWYGDFH--------ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59
Query: 506 --DGQIYIDGFPLTDLDIR--WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEW 561
+G+I IDG + D ++ LR+ +G V Q P I N+ YG + ++
Sbjct: 60 RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDN--- 116
Query: 562 AAKQAYVHEFILSLPCGYETL--------VDDDL------LSGGQKQRIAIARAILRDPA 607
A++ + + ETL V D L LSGGQ+QR+ IARA+ P+
Sbjct: 117 ----AFIRQRVE------ETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPS 166
Query: 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGR 666
+LL+DE SALD S V+ ++H L+ D T++++ H + V D+ G
Sbjct: 167 VLLMDEPASALDPISTAKVEELIHELKKD----YTIVIVTHNMQQAARVSDKTAFFYMGE 222
Query: 667 IIEVGN 672
++E +
Sbjct: 223 MVEYDD 228
|
Length = 250 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.7 bits (248), Expect = 2e-23
Identities = 79/237 (33%), Positives = 119/237 (50%), Gaps = 27/237 (11%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIY 510
N++ Y + + +N + IE N++ A++G SG GKSTF+ R+ + DG +
Sbjct: 7 NLNLFYGKKQALFDIN---MQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVE 63
Query: 511 IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK---DVKNEDIEWAAKQAY 567
I+G + + D+ LR+ +G V Q+P + I NI Y PK +KN+D E +A
Sbjct: 64 IEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA-PKLHGMIKNKDEE----EAL 118
Query: 568 VHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
V + + + G V D L LSGGQ+QR+ IARA+ P +LLLDE TSALD
Sbjct: 119 VVDCLQKV--GLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPI 176
Query: 622 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
S GV+ L + ++I++ H + K V D G +IE G E
Sbjct: 177 SS----GVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229
|
Length = 246 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 5e-23
Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 27/228 (11%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLRE 526
+N V L + E+V ++G +G+GK+T NL+ Y+PS G + G +T L R R
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 527 KIGFVGQEPQLLQ-MDIKSNIMYGC------------PKDVKNEDIEWAAKQAYVHEFIL 573
I Q +L + + N+ G P+ K E A ++A +L
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEE--REARERA---RELL 134
Query: 574 S---LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 630
L + + LS GQ++R+ IARA+ P +LLLDE + L+ E + ++
Sbjct: 135 EFVGLGELADRPAGN--LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELI 192
Query: 631 HALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677
LR+ T+++I H + + DRIVV++ G +I G E+
Sbjct: 193 RELRDR--GGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238
|
Length = 250 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 98.7 bits (246), Expect = 5e-23
Identities = 74/244 (30%), Positives = 123/244 (50%), Gaps = 31/244 (12%)
Query: 454 NISFHYPS------RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
+++ Y + + P+L +V L+IE E V ++G SG GKST LLL L +P+ G
Sbjct: 7 DVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQG 66
Query: 508 QIYIDGFPLTDLD---IRWLREKIGFVGQE-PQLL--QMDIKSNIMYGCPKDVKN-EDIE 560
+ G L LD R R + V Q+ P + +M ++ I G P +++ ++
Sbjct: 67 TVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEP--LRHLTSLD 122
Query: 561 WAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEA 614
+ ++A + E + + L +D LSGGQ QRI IARA+ P +++LDEA
Sbjct: 123 ESEQKARIAELLDMV-----GLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEA 177
Query: 615 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNH 673
S LD + + +L L+ T + I H L +++ R+ V+D G+I+E +
Sbjct: 178 VSNLDMVLQAVILELLRKLQQAFGT--AYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235
Query: 674 AELL 677
A+LL
Sbjct: 236 AQLL 239
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 5e-23
Identities = 59/228 (25%), Positives = 95/228 (41%), Gaps = 35/228 (15%)
Query: 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512
+ I L V + E + ++G +G+GKST + LL +Y P G + +
Sbjct: 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVR 82
Query: 513 GFPLTDLDIRWLREKIGF-VGQEPQLLQMDIKSNI-----MYGCPKDVKNEDIEWAAKQA 566
G + L +G G P+L + NI + G + E K
Sbjct: 83 G------RVSSL---LGLGGGFNPELTGRE---NIYLNGRLLGLSRK------EIDEKID 124
Query: 567 YVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624
+ EF +D + S G K R+A A A +P ILL+DE + D
Sbjct: 125 EIIEF-----SELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGD---AA 176
Query: 625 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
+ + LR K +TVI+++H S+IK + DR +V++ G+I G
Sbjct: 177 FQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 6e-23
Identities = 70/236 (29%), Positives = 122/236 (51%), Gaps = 29/236 (12%)
Query: 450 VQFVNISFHY-PSRPTVPI-LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
++F N+ + Y P P L+++ +E VA+VG +GSGKST + L +PS G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 508 QIYIDGFPLT----DLDIRWLREKIGFVGQ--EPQLLQMDIKSNIMYGCPKD-------V 554
I I G+ +T + +++ LR+K+ V Q E QL + + ++ +G PK+
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG-PKNFGFSEDEA 121
Query: 555 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 614
K + ++W K + I P +E LSGGQ +R+AIA + +P IL LDE
Sbjct: 122 KEKALKWLKKVGLSEDLISKSP--FE-------LSGGQMRRVAIAGVMAYEPEILCLDEP 172
Query: 615 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIE 669
+ LD E K ++ ++ K TVI++ H + + + D ++V++ G++I+
Sbjct: 173 AAGLDPEGR---KEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225
|
Length = 287 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 7e-23
Identities = 57/197 (28%), Positives = 103/197 (52%), Gaps = 11/197 (5%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525
ILN++ ++ A E I G SG GKST + ++ L P+ G + +G ++ L R
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYR 80
Query: 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 585
+++ + Q P L + N+++ P ++N+ + A + F +LP +T++
Sbjct: 81 QQVSYCAQTPTLFGDTVYDNLIF--PWQIRNQQPDPAIFLDDLERF--ALP---DTILTK 133
Query: 586 DL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV 643
++ LSGG+KQRI++ R + P +LLLDE TSALD ++H V ++H + V
Sbjct: 134 NIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNI--AV 191
Query: 644 IVIAHRLSTIKAVDRIV 660
+ + H I D+++
Sbjct: 192 LWVTHDKDEINHADKVI 208
|
Length = 225 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.5 bits (245), Expect = 8e-23
Identities = 70/245 (28%), Positives = 119/245 (48%), Gaps = 44/245 (17%)
Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----- 503
V+ ++S +Y + V N + + IE + V A++G SG GKSTF+ + R+ +
Sbjct: 23 EVK--DLSIYYGEKRAV---NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSA 77
Query: 504 PSDGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP------KDVK 555
S+G+I +G + D +++ LR +IG V Q+P I +NI + K V
Sbjct: 78 RSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVL 137
Query: 556 NEDIE--------WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607
+E +E W + +H LSL SGGQ+QR+ IAR + PA
Sbjct: 138 DEIVEESLTKAALWDEVKDRLHSSALSL-------------SGGQQQRLCIARTLAMKPA 184
Query: 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGR 666
+LLLDE SALD S ++ ++ L+ + ++I++ H + ++ DR +G
Sbjct: 185 VLLLDEPASALDPISNAKIEELITELKEE----YSIIIVTHNMQQALRVSDRTAFFLNGD 240
Query: 667 IIEVG 671
++E
Sbjct: 241 LVEYD 245
|
Length = 268 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 9e-23
Identities = 68/227 (29%), Positives = 109/227 (48%), Gaps = 30/227 (13%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPL-TDLDI 521
L + L I A +V A++G SG GKST + L R+ + G++ +DG + ++D+
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILSLPC 577
LR K+G V Q+P M I N+ YG KD K D V +
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLD-------EVVERSLRGAAL 131
Query: 578 GYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 631
E V D L LSGGQ+QR+ IAR I +P ++L+DE TSALD + H ++ ++
Sbjct: 132 WDE--VKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELME 189
Query: 632 ALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
L+ T++++ H + + + DR G ++E + +
Sbjct: 190 ELKK----NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232
|
Length = 249 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.4 bits (242), Expect = 1e-22
Identities = 79/254 (31%), Positives = 123/254 (48%), Gaps = 43/254 (16%)
Query: 443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502
Q+L+ ++ ++SF+Y T + + + I N+V AI+G SG GKSTF+ L R+
Sbjct: 1 NQQLIPAIKVKDLSFYYN---TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS 57
Query: 503 E-----PSDGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC----- 550
E +G + G + D ++I LR +IG V Q P M I N+ YG
Sbjct: 58 ELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAK 117
Query: 551 -PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAIL 603
P+ +E +E A K A + + V D L LSGGQ+QR+ IARA+
Sbjct: 118 LPQADLDEIVESALKGAALWQ-----------EVKDKLNKSALGLSGGQQQRLCIARALA 166
Query: 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI- 662
P +LL+DE SALD + V+ ++H+LR++ T+ ++ H + V
Sbjct: 167 IKPKVLLMDEPCSALDPIATMKVEELIHSLRSEL----TIAIVTHNMQQATRVSDFTAFF 222
Query: 663 --DDGRI---IEVG 671
D+ RI +E G
Sbjct: 223 STDESRIGQMVEFG 236
|
Length = 259 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 1e-22
Identities = 66/200 (33%), Positives = 100/200 (50%), Gaps = 34/200 (17%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLT--DLD 520
+ + + E N++ A++G SGSGKST++ L R+ + D GQI G + +++
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-VKN-----EDIEWAAKQAYVHEFILS 574
+ +R+ IG V Q P I NI + + VK+ E +E + KQA + +
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD---- 151
Query: 575 LPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 628
V DDL LSGGQ+QR+ IARAI P ILL+DE SALD S ++
Sbjct: 152 -------QVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEE 204
Query: 629 VLHALRNDCKTKRTVIVIAH 648
+ L K T+I++ H
Sbjct: 205 TMFEL----KKNYTIIIVTH 220
|
Length = 267 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 1e-22
Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 36/225 (16%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTDLDIR 522
L+ V + I N+V A++G SG GKSTF+ + R+ + D G++ G + D D+
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 523 --WLREKIGFVGQEPQLLQMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSL 575
LR +IG V Q+P I N+ YG D+ +E +E + ++A + +
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDI-DERVEESLRRAALWD----- 168
Query: 576 PCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 629
V D L LSGGQ+QR+ IARAI DP ++L+DE SALD + ++ +
Sbjct: 169 ------EVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDL 222
Query: 630 LHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVV-IDDGRIIEVGN 672
+ L + TV+++ H + + D+ V + G ++E +
Sbjct: 223 IEELAEE----YTVVIVTHNMQQAARISDKTAVFLTGGELVEFDD 263
|
Length = 285 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 2e-22
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 39/243 (16%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
+Q I+ Y + L + L E + ++G SG+GKS+ + +L L P G +
Sbjct: 3 IQLNGINCFYGAHQ---ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 510 YIDG--FPLT----DLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWA 562
I G F + D IR LR +G V Q+ L + ++ N++ P V + A
Sbjct: 60 NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEA-PCRVLGLSKDQA 118
Query: 563 AKQA-----------YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL 611
+A Y F L LSGGQ+QR+AIARA++ +P +LL
Sbjct: 119 LARAEKLLERLRLKPYADRFPLH-------------LSGGQQQRVAIARALMMEPQVLLF 165
Query: 612 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEV 670
DE T+ALD E + ++ L T T +++ H + + R+V +++G I+E
Sbjct: 166 DEPTAALDPEITAQIVSIIRELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222
Query: 671 GNH 673
G+
Sbjct: 223 GDA 225
|
Length = 242 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 2e-22
Identities = 56/215 (26%), Positives = 103/215 (47%), Gaps = 25/215 (11%)
Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 523
+L+ + L ++ E+ +G +G+GK+T + ++L L +P G+I DG
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL 71
Query: 524 LREKIGFVGQEPQL-LQMDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPC 577
+IG + + P + + N+ + G K +E ++ + + +
Sbjct: 72 --RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGF-- 127
Query: 578 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 637
S G KQR+ IA A+L +P +L+LDE T+ LD + ++ ++ +LR
Sbjct: 128 -----------SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR--- 173
Query: 638 KTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVG 671
TV++ +H LS I K DRI +I+ G++IE G
Sbjct: 174 DQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 2e-22
Identities = 66/239 (27%), Positives = 109/239 (45%), Gaps = 27/239 (11%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-------- 518
LN++ T E N++ I+G SGSGKST V L + G I + + D
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 519 --------LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYV 568
+ + LR ++ V Q P QL + I+ +IM+G P + + E +
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFG-PVALGVKKSEAKKLAKF- 158
Query: 569 HEFILSLPCGYETLVDDDL-LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
++ + L LSGGQK+R+AIA + P IL+ DE T+ LD + EH
Sbjct: 159 --YLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHE-- 214
Query: 628 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYAK 685
++ + + +TV VI H + + V D ++V+D G+I++ G E+ +
Sbjct: 215 -MMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINS 272
|
Length = 320 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 2e-22
Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 13/207 (6%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL---TDLDIRW 523
+L + L I E+V + G SGSGK+T + L+ L +G + + G L ++ ++
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 524 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 582
LR IG++ Q LL + + N+ ++ + + + ++ G
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALE---LQPNLSYQEARERARAMLEAV--GLGDH 134
Query: 583 VD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK 640
+D LSGGQKQR+AIARA++ P ++L DE T+ALDS+S V ++ L +
Sbjct: 135 LDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGC- 193
Query: 641 RTVIVIAHRLSTIKAVDRIVVIDDGRI 667
T++++ H + DRIV ++DG++
Sbjct: 194 -TILIVTHDNRILDVADRIVHMEDGKL 219
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 3e-22
Identities = 68/232 (29%), Positives = 117/232 (50%), Gaps = 20/232 (8%)
Query: 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512
++ + YP L + E E+VA++G +G+GKST + +P+ G++ I
Sbjct: 5 RDLKYSYPDGTEA--LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIK 62
Query: 513 GFPLTDLDIRWL---REKIGFVGQEP--QLLQMDIKSNIMYGCPKDVK--NEDIEWAAKQ 565
G P+ D + L R+ +G V Q P QL ++ ++ +G P ++ E++E K+
Sbjct: 63 GEPI-KYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFG-PLNLGLSKEEVEKRVKE 120
Query: 566 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 625
A + + G+E L SGGQK+R+AIA + P I++LDE TS LD
Sbjct: 121 A-LKAVGME---GFENKPPHHL-SGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175
Query: 626 VKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAEL 676
+ +L+ L K T+I+ H + + D++ V+ DG+II+ G E+
Sbjct: 176 IMKLLYDLN---KEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.3 bits (237), Expect = 5e-22
Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 29/243 (11%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
+Q I+ Y + L + L E + ++G SG+GKS+ + +L L P G +
Sbjct: 3 IQLNGINCFYGAHQA---LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 510 YIDG--FPL----TDLDIRWLREKIGFVGQEPQLL-QMDIKSNIM------YGCPKDVKN 556
I G F +D IR LR +G V Q+ L + ++ N++ G KD
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119
Query: 557 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS 616
E K+ + + P LSGGQ+QR+AIARA++ +P +LL DE T+
Sbjct: 120 ARAEKLLKRLRLKPYADRYPLH---------LSGGQQQRVAIARALMMEPQVLLFDEPTA 170
Query: 617 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAE 675
ALD E + ++ L +T T +++ H + + R+V +++G I+E G+ +
Sbjct: 171 ALDPEITAQIVSIIKELA---ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227
Query: 676 LLH 678
Sbjct: 228 FTE 230
|
Length = 242 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 8e-22
Identities = 145/625 (23%), Positives = 272/625 (43%), Gaps = 81/625 (12%)
Query: 98 WNLSDGQEAENPTAKPITVWIALSR---------MWNLIGRDKWIVLVAVASLIVAAVSE 148
W L + E + W SR + N +G W+ I +S+
Sbjct: 261 WQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLGGRFWL---GGIFKIGHDLSQ 317
Query: 149 ITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVK-RLR 207
P IL+ + S Q + FL+ VT G+ + N+ V RLR
Sbjct: 318 FVGPVILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQY----FQNVGRVGFRLR 373
Query: 208 ETLYSALLFQDVYFFDTEAVGGLTSRLTADCQR------LSNVIGNDINMILRNSLQGAG 261
TL +A+ + + RLT + ++ ++N+I D N + + + Q G
Sbjct: 374 STLVAAIFHKSL-------------RLTHEARKNFASGKVTNMITTDANALQQIAEQLHG 420
Query: 262 AF-------INLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHAN---N 311
+ ++++ L L +++L L +++ + ++ LT+E +
Sbjct: 421 LWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVG 480
Query: 312 VAQETLCMMRTVRVYGTEEKELGRYK-IWLEKLAFIRIRESMAYGLWNMSFITLYRSTQV 370
+ E L M TV+ Y E+ R + I E+L++ R + ++ +N SFI V
Sbjct: 481 IINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLS--AFN-SFILNSIPVVV 537
Query: 371 MAVLLGGMSIMIGQVSPEQ-LTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 429
V G ++ G ++P + T L+ ++ + M+ NL S Q + A + ++ +
Sbjct: 538 TLVSFGVFVLLGGDLTPARAFTSLSLFA--VLRSPLNMLPNLLS--QVVNANVSLQRIEE 593
Query: 430 LLPSNQ-FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSG 488
LL S + L++ LQ + N F + S+ + P L+ + L I +VAIVG +G
Sbjct: 594 LLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTG 653
Query: 489 SGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 548
GK++ ++ +L ++ + + IR + +V Q + ++ NI++
Sbjct: 654 EGKTSLISAMLGELSHAET---------SSVVIR---GSVAYVPQVSWIFNATVRENILF 701
Query: 549 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL---LSGGQKQRIAIARAILRD 605
G D ++E W A + L L G + + +SGGQKQR+++ARA+ +
Sbjct: 702 G--SDFESERY-WRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSN 758
Query: 606 PAILLLDEATSALDSESEHYV--KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 663
I + D+ SALD+ H V + L+ +T +++ ++L + +DRI+++
Sbjct: 759 SDIYIFDDPLSALDAHVAHQVFDSCMKDELKG-----KTRVLVTNQLHFLPLMDRIILVS 813
Query: 664 DGRIIEVGNHAELLHKGRLYAKLVK 688
+G I E G AEL G L+ KL++
Sbjct: 814 EGMIKEEGTFAELSKSGSLFKKLME 838
|
Length = 1495 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 8e-22
Identities = 65/238 (27%), Positives = 116/238 (48%), Gaps = 22/238 (9%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ ++ F Y L + L+I A++G +G+GKST + L +Y P G++
Sbjct: 5 IEVEDLHFRYKDGTKA--LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYG-----CPKDVKNEDIEWA 562
+ G + + +W+R K+G V Q+P Q+ + ++ +G KD +E A
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 563 AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622
K + +F P Y LS GQK+R+AIA + DP +++LDE + LD
Sbjct: 123 LKAVRMWDFRDKPP--YH-------LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRG 173
Query: 623 EHYVKGVLHALRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELLHK 679
+ + +L L N K TVIV H + + D+++V+ +GR++ G+ + L +
Sbjct: 174 QETLMEILDRLHNQGK---TVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE 228
|
Length = 274 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 9e-22
Identities = 76/222 (34%), Positives = 110/222 (49%), Gaps = 28/222 (12%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTD--LD 520
L V L I V A +G SG GKSTF+ L R+ + D G+I +DG + D LD
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAK-QAYVHEFIL-SL-PC 577
+ LR ++G V Q+P I N+ YG P+ I A+ +A + E + SL
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYG-PR------IHGLARSKAELDEIVETSLRKA 147
Query: 578 GYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 631
G V D L LSGGQ+QR+ IARAI P ++L+DE SALD + V+ ++
Sbjct: 148 GLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207
Query: 632 ALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 672
LR T++++ H + V R G ++EVG+
Sbjct: 208 ELR----QNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245
|
Length = 267 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.0 bits (236), Expect = 9e-22
Identities = 69/224 (30%), Positives = 106/224 (47%), Gaps = 39/224 (17%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT-------DLD 520
L + L NE+ A++G SG GKST++ L R+ + G L + D
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKNEDIEWAAKQAYV------ 568
+ LR+++G V Q+P I N++YG K V +E +E + KQA +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 569 --HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
HE LSL SGGQ+QR+ IAR + P ++LLDE TSALD S +
Sbjct: 141 HLHESALSL-------------SGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQI 187
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIE 669
+ +L LR+ + T+I++ H + + D+ G +IE
Sbjct: 188 ENMLLELRD----QYTIILVTHSMHQASRISDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 1e-21
Identities = 64/202 (31%), Positives = 98/202 (48%), Gaps = 29/202 (14%)
Query: 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL-- 516
YP P V L + E EV+A++G +G+GKST + L L P G + IDG PL
Sbjct: 1 YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 517 TDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 574
+ + R+++G V Q+P QL D+ ++ +G P ++ + E + V E +
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFG-PLNLGLSEAEVERR---VREAL-- 112
Query: 575 LPCGYETLVDDD--------LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
T V LSGG+K+R+AIA A+ P +LLLDE T+ LD +
Sbjct: 113 ------TAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQM 166
Query: 627 KGVLHALRNDCKTKRTVIVIAH 648
+L LR + TV++ H
Sbjct: 167 LAILRRLRAEGM---TVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 1e-21
Identities = 68/260 (26%), Positives = 111/260 (42%), Gaps = 60/260 (23%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M + N+S Y RP +L +V LT+ E + +VG +G+GKST + +L EP
Sbjct: 1 MSMITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS 57
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD-IKSNIMYGCPK---------DVKN 556
G++ ++G++ QEP L + ++ G + +
Sbjct: 58 GEVTRPK-----------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYA 106
Query: 557 EDIEWAAKQAYVHEFILSLPCGYET-----LVDDDL-----------LSGGQKQRIAIAR 600
+ + E +L G+ L LSGG ++R+A+AR
Sbjct: 107 LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALAR 166
Query: 601 AILRDPAILLLDEATSALDSES----EHYVKGVLHALRNDCKTKRTVIVIAH-R--LSTI 653
A+L +P +LLLDE T+ LD ES E Y+K + TVIV++H R L +
Sbjct: 167 ALLEEPDLLLLDEPTNHLDLESIEWLEDYLK----------RYPGTVIVVSHDRYFLDNV 216
Query: 654 KAVDRIVVIDDGRIIE-VGN 672
I+ +D G++ GN
Sbjct: 217 --ATHILELDRGKLTPYKGN 234
|
Length = 530 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 2e-21
Identities = 74/249 (29%), Positives = 121/249 (48%), Gaps = 31/249 (12%)
Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----- 503
++ N++ Y + L +V + I N V A++G SG GKSTF+ L R+ +
Sbjct: 12 QIKVENLNLWYGEKQA---LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68
Query: 504 PSDGQIYIDGFPL--TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK--DVKNEDI 559
+G++ I+G + D+D+ LR+ +G V Q+P M I N+ YG P+ +D+
Sbjct: 69 RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG-PRIHGANKKDL 127
Query: 560 EWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDE 613
+ + A + S ET D L LSGGQ+QR+ IAR + P I+L DE
Sbjct: 128 DGVVENA-----LRSAALWDET--SDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE 180
Query: 614 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 672
TSALD S ++ ++ L+ D T++++ H + + D G +IE G
Sbjct: 181 PTSALDPISTARIEDLIMNLKKD----YTIVIVTHNMQQAARISDYTGFFLMGELIEFGQ 236
Query: 673 HAELLHKGR 681
++ H R
Sbjct: 237 TRQIFHNPR 245
|
Length = 258 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (237), Expect = 2e-21
Identities = 78/231 (33%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQ 508
N +F Y +R T +L+ + L I+ N+V A +G SG GKSTF+ L +L + +G+
Sbjct: 85 NFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGE 143
Query: 509 IYIDGFPLTDLDIRWL--REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 566
IY G I L R +IG V Q+P +M I N+ YG P++ D + K
Sbjct: 144 IYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYG-PRNNGINDRKILEK-- 200
Query: 567 YVHEFILSLPCGYETLVDD-----DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
+ E L ++ + DD + LSGGQ+QR+ IARAI +P +LL+DE TSALD
Sbjct: 201 -IVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPI 259
Query: 622 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
+ ++ ++ L K K ++I++ H ++ + + D V G I E G
Sbjct: 260 ATAKIEELILEL----KKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306
|
Length = 329 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 3e-21
Identities = 68/214 (31%), Positives = 107/214 (50%), Gaps = 14/214 (6%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526
L + L+++ E V ++G SG GK+T + ++ L + G IY G +T L + +
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KR 76
Query: 527 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 585
G V Q L + + NI YG +KN + A V E +L L G
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYG----LKNRGMGRAEVAERVAE-LLDL-VGLPGSERK 130
Query: 586 --DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV 643
LSGGQ+QR+A+ARA+ P +LLLDE SALD+ +++ + L+ + T
Sbjct: 131 YPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR--RLGVTT 188
Query: 644 IVIAH-RLSTIKAVDRIVVIDDGRIIEVGNHAEL 676
I++ H + + DRIVV++ G I +VG E+
Sbjct: 189 IMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEI 222
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 3e-21
Identities = 76/265 (28%), Positives = 120/265 (45%), Gaps = 59/265 (22%)
Query: 454 NISFHYPSR-PTV-PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-- 509
NI + + PT L++V + I E +AI+G +GSGK+TF+ L L P G I
Sbjct: 7 NIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEW 66
Query: 510 -YIDGFPLTDLD---------------------IRWLREKIGFVGQ--EPQLLQMDIKSN 545
+ D I+ +R ++G V Q E QL + I+ +
Sbjct: 67 IFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKD 126
Query: 546 IMYGCPKDV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL---------LSGGQK 593
I++G P + K E + AAK Y LV D LSGGQK
Sbjct: 127 IIFG-PVSMGVSKEEAKKRAAK--------------YIELVGLDESYLQRSPFELSGGQK 171
Query: 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-ST 652
+R+A+A + +P L+ DE T+ LD + VK +L N K +T+I++ H L +
Sbjct: 172 RRVALAGILAMEPDFLVFDEPTAGLDPQG---VKEILEIFDNLNKQGKTIILVTHDLDNV 228
Query: 653 IKAVDRIVVIDDGRIIEVGNHAELL 677
++ R + DG+II+ G+ ++L
Sbjct: 229 LEWTKRTIFFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 3e-21
Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 36/225 (16%)
Query: 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS---DGQIYIDGFPL--TDLDIRW 523
V L IE V A +G SG GKST + L R++E P +G++ +DG L +D
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 524 LREKIGFVGQEPQLL-QMDIKSNIMYGC------PKDVKNEDIEWAAKQAYVHEFI---L 573
+R IG V Q P M I+ N++ G K +E +E + + A + + L
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRL 142
Query: 574 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 633
P G LSGGQ+QR+ IARAI +P +LL+DE SALD S ++ +++ L
Sbjct: 143 DKPGGG--------LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL 194
Query: 634 RNDCKTKRTVIVIAHRLSTIKAV-DRIV------VIDDGRIIEVG 671
+ D T++++ H + V D+ GR++E+
Sbjct: 195 KQD----YTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEID 235
|
Length = 258 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 4e-21
Identities = 73/242 (30%), Positives = 113/242 (46%), Gaps = 56/242 (23%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----------PSDGQ-IYIDGFP 515
L V + I V A++G SG GKSTF+ L R+ + DGQ IY DG
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 516 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK------------------DVKNE 557
L +L R+++G V Q P I+ NI YG K D ++E
Sbjct: 121 LVEL-----RKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDE 175
Query: 558 DIEWAAKQAYVHEFILSLPCGYETLVDDDL-LSGGQKQRIAIARAILRDPAILLLDEATS 616
+E + +QA + + + + L D+ L LSGGQ+QR+ IAR + DP ++L+DE S
Sbjct: 176 LVERSLRQAALWDEV------NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPAS 229
Query: 617 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAH------RLSTIKAVDRIVVIDDGRIIEV 670
ALD + ++ ++ L + TV+V+ H R+S A V + G ++E
Sbjct: 230 ALDPIATSKIEDLIEELAEE----YTVVVVTHNMQQAARISDQTA----VFLTGGELVEY 281
Query: 671 GN 672
+
Sbjct: 282 DD 283
|
Length = 305 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 4e-21
Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 38/221 (17%)
Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 532
LT+E E VAI+G SG+GKST +NL+ P+ G + ++G T R + +
Sbjct: 20 LTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSMLF 77
Query: 533 QEPQLL-QMDIKSNIMYGCPKDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDD 586
QE L + + NI G +K E + A+Q + + + LP
Sbjct: 78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQ-------- 129
Query: 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND--------CK 638
LSGGQ+QR+A+AR ++R+ ILLLDE SALD ALR + C+
Sbjct: 130 -LSGGQRQRVALARCLVREQPILLLDEPFSALDP-----------ALRQEMLTLVSQVCQ 177
Query: 639 TKR-TVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 677
++ T+++++H L + R +V+ DGRI G ELL
Sbjct: 178 ERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218
|
Length = 232 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 6e-21
Identities = 65/225 (28%), Positives = 112/225 (49%), Gaps = 12/225 (5%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ N+S+ YP P L ++ L I+ E + I+G +GSGKST L L P G++
Sbjct: 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 510 YIDGFPLTDLD-IRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 566
+ G D ++ +R+ +G V Q P Q + ++ ++ +G P+++ IE +
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG-PENLCLPPIEIRKR-- 116
Query: 567 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
V + + LSGGQ Q +A+A + +P L+ DE TS LD +S
Sbjct: 117 -VDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG--- 172
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 671
VL ++ + +T++ I H L + DRI+V+D G+I+ G
Sbjct: 173 IAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEG 217
|
Length = 274 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.5 bits (232), Expect = 6e-21
Identities = 71/243 (29%), Positives = 125/243 (51%), Gaps = 15/243 (6%)
Query: 454 NISFHYPSRPTVPI--LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511
N+S+ Y + LN+ LT + N+V ++G +GSGKST + L L GQ +
Sbjct: 11 NVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV 70
Query: 512 DGFPLTD-----LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAK 564
+ + +++ LR++IG V Q P QL Q I+ +I +G P ++ E+ + A K
Sbjct: 71 GDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG-PVNL-GENKQEAYK 128
Query: 565 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624
+ ++ LP Y +L SGGQK+R+A+A I D L+LDE T LD + E
Sbjct: 129 KVPELLKLVQLPEDYVKRSPFEL-SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEE 187
Query: 625 YVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKGRLY 683
+ R + + K+ +I++ H + + + D ++V+ +G++I +G+ E+ L
Sbjct: 188 DFINLF--ERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELL 245
Query: 684 AKL 686
K+
Sbjct: 246 TKI 248
|
Length = 289 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 7e-21
Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 20/220 (9%)
Query: 462 RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTD 518
ILN V L +E+ +V+AI+G SGSGK+T ++ + E GQI +G P
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR-- 74
Query: 519 LDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYG--CPKDVKNEDIEWAAKQAYVHEFILSL 575
++ + +V Q+ LL + ++ + Y K+ D A ++ V E +L
Sbjct: 75 -KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSD---AIRKKRV-EDVLLR 129
Query: 576 PCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 633
+ + + +SGG+++R++IA +L DP +L+LDE TS LDS + ++ L
Sbjct: 130 DLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTAL---NLVSTL 186
Query: 634 RNDCKTKRTVIVIAH--RLSTIKAVDRIVVIDDGRIIEVG 671
+ R VI+ H R + DRI+++ G I+ G
Sbjct: 187 SQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.4 bits (229), Expect = 7e-21
Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 35/230 (15%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPL--TDLD 520
L+ + L E E+ A++G SG GKSTF+ L R+ + + G+I +G + + +D
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP------KDVKNEDIEWAAKQAYVHEFILS 574
+ LR+++G V Q+P + N+ YG K++ ++ +E + KQA + +
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK---- 135
Query: 575 LPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 628
ET D+L SGGQ+QRI IARA+ P ++LLDE TSALD S ++
Sbjct: 136 -----ET--KDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEE 188
Query: 629 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
L L++ T I++ H L + D+ + +G +IE G E+
Sbjct: 189 TLMELKHQ----YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234
|
Length = 251 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.3 bits (229), Expect = 7e-21
Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 37/226 (16%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFV---NLLLRL---YEPSDGQIYIDGFPLTD-LD 520
L ++ L+I NEV AI+G SG GKSTF+ NL++++ + + Y L +D
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK--DVKN-----EDIEWAAKQAYVHEFIL 573
+ LR+ IG V Q+ I N+ YG P+ KN E +E + K + +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYG-PRIHGTKNKKKLQEIVEKSLKDVALWD--- 143
Query: 574 SLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
V D L LSGGQ+QR+ IARA+ +P +LL+DE TSALD S ++
Sbjct: 144 --------EVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIE 195
Query: 628 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 672
++ L K K T++++ H + V D+ G ++E +
Sbjct: 196 ELILKL----KEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECND 237
|
Length = 259 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 9e-21
Identities = 68/215 (31%), Positives = 111/215 (51%), Gaps = 17/215 (7%)
Query: 463 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDL 519
V L++V L + A E+V++ G +G+GKST + +L +Y P +G+I +G L
Sbjct: 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQAS 74
Query: 520 DIRWLREK-IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI--LSL 575
+IR I + QE L+ ++ + NI G + +++ A + + L L
Sbjct: 75 NIRDTERAGIAIIHQELALVKELSVLENIFLGN-EITPGGIMDYDAMYLRAQKLLAQLKL 133
Query: 576 PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 635
T V + L GQ+Q + IA+A+ + +L+LDE T++L +ESE VL +
Sbjct: 134 DINPATPVGN--LGLGQQQLVEIAKALNKQARLLILDEPTASL-TESE---TAVLLDIIR 187
Query: 636 DCKTKR-TVIVIAHRLSTIKAV-DRIVVIDDGRII 668
D K I I+H+L+ +KA+ D I VI DGR I
Sbjct: 188 DLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI 222
|
Length = 506 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 1e-20
Identities = 66/225 (29%), Positives = 120/225 (53%), Gaps = 25/225 (11%)
Query: 443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502
+ +L+ ++ N+SF+Y T IL V + I ++V AI+G SG GKSTF+ L R+
Sbjct: 1 MSKLIPAIKVNNLSFYYD---TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN 57
Query: 503 EPSDGQIYIDG--------FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC---- 550
E + ++ ++G +++ LR ++ V +P L M + N+ YG
Sbjct: 58 E-LESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVG 116
Query: 551 --PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608
PK ++ +E A K A + + I +++ +D LSGGQ+QR+ IARA+ P +
Sbjct: 117 WRPKLEIDDIVESALKDADLWDEIKHKI--HKSALD---LSGGQQQRLCIARALAVKPKV 171
Query: 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 653
LL+DE LD + V+ ++ +LR +++ T+++++H L +
Sbjct: 172 LLMDEPCFGLDPIASMKVESLIQSLR--LRSELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 1e-20
Identities = 57/216 (26%), Positives = 105/216 (48%), Gaps = 19/216 (8%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
+ V + E+ ++G +G+GK+T + +L L +P+ G+ + G + + R +R +
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRR 74
Query: 528 IGFVGQEPQL-LQMDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 581
IG V Q+ + ++ N+ +YG P + E I+ + E L Y
Sbjct: 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTY-- 132
Query: 582 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
SGG ++R+ IAR+++ P +L LDE T LD ++ +V + L+ +
Sbjct: 133 -------SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM-- 183
Query: 642 TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 676
T+++ H + + + DR+ +ID GRII G EL
Sbjct: 184 TILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 1e-20
Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 49/226 (21%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL 524
IL V LTI+ EV A++G +GSGKST ++ YE ++G+I G +TDL
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE-E 73
Query: 525 REKIG-FVG-QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 582
R ++G F+ Q P + VKN D F+ + G
Sbjct: 74 RARLGIFLAFQYPPEIPG-------------VKNAD------------FLRYVNEG---- 104
Query: 583 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRT 642
SGG+K+R I + +L +P + +LDE S LD ++ V V++ LR + ++
Sbjct: 105 -----FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE---GKS 156
Query: 643 VIVIAHR---LSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 685
V++I H L IK DR+ V+ DGRI++ G+ EL + K
Sbjct: 157 VLIITHYQRLLDYIKP-DRVHVLYDGRIVKSGD-KELAL--EIEKK 198
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 93.9 bits (233), Expect = 1e-20
Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 19/218 (8%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--DGQIYIDGFPLTDLDIRWL 524
+L+ + L IEA E++A++G SG GK+T + + + + G+I I LT
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH-- 77
Query: 525 REKIGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCG 578
+ + + Q L + ++ N+ +G PK E + A K + + LP
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQ 137
Query: 579 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638
LSGG +QRIAIARAI +P +LLLDE SALD+ ++ + AL +
Sbjct: 138 ---------LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELP 188
Query: 639 TKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 676
+ V + + D+ ++ DGR+ G L
Sbjct: 189 ELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 1e-20
Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 23/229 (10%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
V+ IS + + +++++ LTI E + ++G SG GK+T + L+ P G+I
Sbjct: 15 VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKNEDIEWAA 563
+DG +T + + V Q L M + N+ +G P + A
Sbjct: 72 MLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129
Query: 564 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
+ + EF P LSGGQ+QR+AIARA++ P +LLLDE+ SALD +
Sbjct: 130 RMVQLEEFAQRKP---------HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLR 180
Query: 624 HYVKGVLHALRNDCKTKRTVIVIAH-RLSTIKAVDRIVVIDDGRIIEVG 671
++ L AL+ K T + + H + + DRIVV+ DGRI + G
Sbjct: 181 KQMQNELKALQR--KLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227
|
Length = 375 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 1e-20
Identities = 70/270 (25%), Positives = 123/270 (45%), Gaps = 11/270 (4%)
Query: 134 VLVAVASLIVAAVSEITMPRILA--EAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLR 191
+L+A+ LI+A + + P +L + S ++L+ V L+
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSS-LISLAILLIAVGVLQGLLLQ 59
Query: 192 SG--CFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDI 249
+ KRL L +L + FFDT +VG LTSRLT D ++ + +G+ +
Sbjct: 60 GSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKL 119
Query: 250 NMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVS-VYGQYQKRASVLTQECNAH 308
+ ++ G FI + W LTL LL L I++S V + ++ + Q+ A
Sbjct: 120 GLFFQSLATVVGGFIVMFYYGWKLTL-VLLAILPLLILLSAVLAKKLRKLNRKEQKAYAK 178
Query: 309 ANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN--MSFITLYR 366
A +VA+E+L +RTV+ +G EE EL RY LE I++++ GL I+
Sbjct: 179 AGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISY-- 236
Query: 367 STQVMAVLLGGMSIMIGQVSPEQLTKYVLY 396
+ +A+ G ++ G +S + ++
Sbjct: 237 LSYALALWFGAYLVISGGLSVGTVFAFLSL 266
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 2e-20
Identities = 63/238 (26%), Positives = 121/238 (50%), Gaps = 33/238 (13%)
Query: 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512
N+S Y R ++N V L+++ E+V ++G +G+GK+T +++ L +P G+I +D
Sbjct: 4 ENLSKRYGKRK---VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 513 GFPLTDLDI-RWLREKIGFVGQEPQLL-QMDIKSNIM-----YGCPKDVKNEDIEWAAKQ 565
G +T L + + R IG++ QE + ++ ++ NI+ G K + E +E
Sbjct: 61 GQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLE----- 115
Query: 566 AYVHEF-ILSL---PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
+ EF I L LSGG+++R+ IARA+ +P LLLDE + +D
Sbjct: 116 ELLEEFHITHLRKSKASS--------LSGGERRRVEIARALATNPKFLLLDEPFAGVDPI 167
Query: 622 SEHYVKGVLHALRNDCKTKRTVIVIA-HRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 677
+ ++ ++ L++ + ++I H + T+ DR +I +G+++ G E+
Sbjct: 168 AVQDIQKIIKILKD----RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 2e-20
Identities = 74/268 (27%), Positives = 124/268 (46%), Gaps = 60/268 (22%)
Query: 450 VQFVNISFHYPSR-------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502
+Q +++ HYP + V L+ V T+E + +A+VG SG GKST LL +
Sbjct: 6 LQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE 65
Query: 503 EPSDGQIYIDGFPLTDLD---IRWLREKIGFVGQEP-----------QLLQ--MDIKSNI 546
P+ G++Y G L D + LR+KI V Q P Q+L+ + I +++
Sbjct: 66 TPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSL 125
Query: 547 MYGCPKDVKNEDIEWAAK--------QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598
+ + + + AK Y H F SGGQ+QRIAI
Sbjct: 126 ---SAAERREKALAMMAKVGLRPEHYDRYPHMF-----------------SGGQRQRIAI 165
Query: 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-D 657
ARA++ DP +++ DE SALD + V ++ L+ + + + I+H LS ++ + D
Sbjct: 166 ARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGL--SYVFISHDLSVVEHIAD 223
Query: 658 RIVVIDDGRIIEVGNHAELLHKGRLYAK 685
++V+ GR +E G K +++
Sbjct: 224 EVMVMYLGRCVEKGT------KEQIFNN 245
|
Length = 327 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 3e-20
Identities = 73/261 (27%), Positives = 109/261 (41%), Gaps = 56/261 (21%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL------YE 503
++ ++++FH TV + + IEA E +A+VG SGSGKS +L L
Sbjct: 9 IRNLSVAFHQEGG-TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAH 67
Query: 504 PSDGQIYIDGFPLTDLDIRWLR----EKIGFVGQEP------------QLLQMDIKSNIM 547
PS G I DG L R LR KIG + QEP QL ++ +
Sbjct: 68 PS-GSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGL 126
Query: 548 YGCPKDVKNEDIEW----------AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597
+ +E AY HE LSGGQ+QR+
Sbjct: 127 SR--AAARARALELLELVGIPEPEKRLDAYPHE-----------------LSGGQRQRVM 167
Query: 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV- 656
IA A+ +P +L+ DE T+ALD + + +L L+ + ++ I H L ++
Sbjct: 168 IAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA--ELGMAILFITHDLGIVRKFA 225
Query: 657 DRIVVIDDGRIIEVGNHAELL 677
DR+ V+ G I+E G L
Sbjct: 226 DRVYVMQHGEIVETGTTETLF 246
|
Length = 534 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 3e-20
Identities = 70/246 (28%), Positives = 119/246 (48%), Gaps = 35/246 (14%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ ++++Y L + + I+ EV AI+G +G+GKST L + +PS G+I
Sbjct: 6 LKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 510 YIDGFPL--TDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGC-----PKDVKNEDIE 560
DG P+ + + LRE +G V Q+P QL + ++ +G P+D + ++
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 561 WAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSAL 618
A K+ G E L D LS GQK+R+AIA ++ +P +L+LDE T+ L
Sbjct: 124 NALKRT-----------GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGL 172
Query: 619 D----SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 673
D SE + + L T+I+ H + + D + V+ +GR+I GN
Sbjct: 173 DPMGVSEIMKLLVEMQKEL------GLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 226
Query: 674 AELLHK 679
E+ +
Sbjct: 227 KEVFAE 232
|
Length = 283 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 3e-20
Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 17/234 (7%)
Query: 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518
Y + LN++ N +A++G +G+GKST + +P+ G + I G P+T
Sbjct: 11 YSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITK 70
Query: 519 LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSL 575
+IR +R+ +G V Q P Q+ ++ +I +G + E + A +H
Sbjct: 71 ENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA-LHML---- 125
Query: 576 PCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 633
G E L D LSGG+K+R+AIA I +P +L+LDE T+ LD + VK ++ L
Sbjct: 126 --GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG---VKELIDFL 180
Query: 634 RNDCKT-KRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYAK 685
+ +T TVI H+L + + D I V+D GRI+ G E+ + L A+
Sbjct: 181 NDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLAR 234
|
Length = 277 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 3e-20
Identities = 65/212 (30%), Positives = 109/212 (51%), Gaps = 26/212 (12%)
Query: 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WL---RE 526
V LT+ A + AI G SG+GK++ +N + L P G+I ++G L D + L +
Sbjct: 17 VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76
Query: 527 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF--ILSLPCGYETLV 583
+IG+V Q+ +L ++ N+ YG + +F I++L G E L+
Sbjct: 77 RIGYVFQDARLFPHYKVRGNLRYGM----AKSMVA---------QFDKIVAL-LGIEPLL 122
Query: 584 D--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
D LSGG+KQR+AI RA+L P +LL+DE ++LD + + L L +
Sbjct: 123 DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIP- 181
Query: 642 TVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGN 672
++ ++H L I + DR+VV++ G++ G
Sbjct: 182 -ILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 4e-20
Identities = 75/241 (31%), Positives = 119/241 (49%), Gaps = 28/241 (11%)
Query: 448 GHVQFVNISFHYPSRPTVP-ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
G + F + Y R +P +L V I E V IVG +GSGKST + +R+ E
Sbjct: 1307 GSLVFEGVQMRY--REGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG 1364
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI---MYGCPKDVKNEDIEWAA 563
G+I ++G + +R LR + + Q+P L ++ N+ + +V WAA
Sbjct: 1365 GEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEV------WAA 1418
Query: 564 KQAY-VHEFILSLPCGYETLVDDDLL--SGGQKQRIAIARAIL-RDPAILLLDEATS--- 616
+ + E + S G ++ V + S GQ+Q + +ARA+L + +L+DEAT+
Sbjct: 1419 LELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANID 1478
Query: 617 -ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 675
ALD + + V A TVI IAHRL T+ D+I+V+D G + E+G+ E
Sbjct: 1479 PALDRQIQATVMSAFSAY--------TVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRE 1530
Query: 676 L 676
L
Sbjct: 1531 L 1531
|
Length = 1560 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 5e-20
Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 29/234 (12%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS---DGQIYIDGFPLTDL 519
V +L+ V L I N + A++G SGSGKST + + RL E P G++Y+DG + +
Sbjct: 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM 75
Query: 520 DIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKD--VKN-----EDIEWAAKQAYVHEF 571
D+ LR ++ V Q P + + I N+ G + VK+ E + WA ++A + +
Sbjct: 76 DVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDE 135
Query: 572 I---LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 628
+ L P G LSGGQ+QR+ IARA+ P +LL DE T+ LD E+ ++
Sbjct: 136 VKDRLDAPAGK--------LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIES 187
Query: 629 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGR 681
+ L+ D T++++ H + D + + G+I+E G E+ R
Sbjct: 188 LFLELKKD----MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPR 237
|
Length = 250 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 6e-20
Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 8/215 (3%)
Query: 456 SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515
S V L + TIE E+V +G +G+GK+T + +L L +P+ G++ + G
Sbjct: 25 SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLV 84
Query: 516 LTDLDIRWLREKIGFV-GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 574
++LR +IG V GQ+ QL D+ + + D+ A + + E
Sbjct: 85 PWKRRKKFLR-RIGVVFGQKTQLW-WDLPVIDSFYLLAAIY--DLPPARFKKRLDELSEL 140
Query: 575 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 634
L LS GQ+ R IA A+L +P IL LDE T LD ++ ++ L
Sbjct: 141 LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN 200
Query: 635 NDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 668
+ T TV++ +H + I+A+ R++VID GR++
Sbjct: 201 RERGT--TVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.7 bits (222), Expect = 6e-20
Identities = 73/238 (30%), Positives = 118/238 (49%), Gaps = 23/238 (9%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
NIS Y IL + + I N + I+G SGSGKST + +L RL E D +I +DG
Sbjct: 12 NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG 71
Query: 514 FPLT------DLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQA 566
L +D LR+++G V Q+P + I NI Y +K+ I+ +
Sbjct: 72 KVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAY----PLKSHGIKEKREIK 127
Query: 567 YVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
+ E L G V D L LSGGQ+QR+ IARA+ P +LL+DE TS +D
Sbjct: 128 KIVEECLR-KVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI 186
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
+ ++ ++ L+N+ +++++H + V D + + +G ++E G+ E+
Sbjct: 187 VNSQAIEKLITELKNEI----AIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 6e-20
Identities = 57/214 (26%), Positives = 106/214 (49%), Gaps = 16/214 (7%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525
LN + L I + V ++G +G+GKST +N + +P+ GQI IDG +T +
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79
Query: 526 EKIGFVGQEPQL---LQMDIKSNIMYGCPKDVKNEDIEW-----AAKQAYVHEFILSLPC 577
+ V Q+P ++ I+ N+ + + + +++ E + L
Sbjct: 80 NLLARVFQDPLAGTAPELTIEENLALA---ESRGKKRGLSSALNERRRSSFRERLARLGL 136
Query: 578 GYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 635
G E + D LLSGGQ+Q +++ A L P ILLLDE T+ALD ++ +V + +
Sbjct: 137 GLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVE 196
Query: 636 DCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRII 668
+ K T +++ H + + +R++++ G+I+
Sbjct: 197 --EHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 8e-20
Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 24/228 (10%)
Query: 462 RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 521
R TV + + T+ + +AI+G +GSGKST +L + EP+ G++ ID PL D
Sbjct: 23 RQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82
Query: 522 RWLREKIGFVGQEP-----------QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE 570
+ ++I + Q+P Q+L ++ N D++ E E +
Sbjct: 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLN------TDLEPEQREKQIIETLRQV 136
Query: 571 FILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 630
+L Y +L+ GQKQR+ +ARA++ P +++ DEA ++LD + ++
Sbjct: 137 GLLPDHASYYP----HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLM 192
Query: 631 HALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
L+ K + I + L +K + D+++V+ G ++E G+ A++L
Sbjct: 193 LELQE--KQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 8e-20
Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 28/230 (12%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT---DLD--- 520
+L V L A +V++I+G SGSGKSTF+ + L +PS+G I ++G + D D
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 521 -------IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDV----KNEDIEWAAKQAYV 568
+R LR ++ V Q L M + N+M P V K E E A K Y+
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-PIQVLGLSKQEARERAVK--YL 136
Query: 569 HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 628
+ + + V LSGGQ+QR++IARA+ +P +LL DE TSALD E V
Sbjct: 137 AKVGIDERAQGKYPVH---LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE---LVGE 190
Query: 629 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
VL ++ + +T++V+ H + + V ++ + G+I E G +L
Sbjct: 191 VLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240
|
Length = 257 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 8e-20
Identities = 73/246 (29%), Positives = 111/246 (45%), Gaps = 37/246 (15%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M V N++ Y V I + L I E V VG SG GKST + ++ L + +
Sbjct: 1 MASVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITS 57
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAK 564
G ++I + D+ +G V Q L + + N+ +G K E+I
Sbjct: 58 GDLFIGEKRMNDVPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVN 115
Query: 565 QAYVHEFILSLPCGYETLVD--DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622
Q +L L L+D LSGGQ+QR+AI R ++ +P++ LLDE S LD+
Sbjct: 116 QV---AEVLQL----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA-- 166
Query: 623 EHYVKGVLHALRNDC---------KTKRTVIVIAH-RLSTIKAVDRIVVIDDGRIIEVGN 672
ALR + RT+I + H ++ + D+IVV+D GR+ +VG
Sbjct: 167 ---------ALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
Query: 673 HAELLH 678
EL H
Sbjct: 218 PLELYH 223
|
Length = 369 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 9e-20
Identities = 69/238 (28%), Positives = 116/238 (48%), Gaps = 35/238 (14%)
Query: 454 NISFHYPS------RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
+S HY +LN+V L++++ E VA++G SG GKST LL+ L PS G
Sbjct: 8 GLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG 67
Query: 508 QIYIDGFPLTDLD---IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE------D 558
+ G PL L+ + R I V Q+ + ++ + + +++ E
Sbjct: 68 NVSWRGEPLAKLNRAQRKAFRRDIQMVFQDS-ISAVNPRKTV-----REIIREPLRHLLS 121
Query: 559 IEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLD 612
++ A + A E + ++ L D L LSGGQ QR+ +ARA+ +P +L+LD
Sbjct: 122 LDKAERLARASEMLRAV-----DLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILD 176
Query: 613 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIE 669
EA S LD + V +L L+ + + I H L + + R++V+D+G+I+E
Sbjct: 177 EAVSNLDLVLQAGVIRLLKKLQQ--QFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 9e-20
Identities = 70/218 (32%), Positives = 112/218 (51%), Gaps = 26/218 (11%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
+S Y R +LN + L I A + VA+VG SG GKST + LL L PS G++
Sbjct: 17 AVSKRYGERT---VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGT 73
Query: 514 FPLTDLDIRWLREKIGFVGQEPQLLQMD-IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 572
PL + RE + Q+ +LL + N+ G ++ AA QA
Sbjct: 74 APLAEA-----REDTRLMFQDARLLPWKKVIDNVGLGLKGQWRD-----AALQALA---- 119
Query: 573 LSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 630
G ++ LSGGQKQR+A+ARA++ P +LLLDE ALD+ + ++ ++
Sbjct: 120 ---AVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLI 176
Query: 631 HALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 667
+L + TV+++ H +S A+ DR+++I++G+I
Sbjct: 177 ESLWQ--QHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 1e-19
Identities = 60/229 (26%), Positives = 110/229 (48%), Gaps = 25/229 (10%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RW 523
+ L V L +E E+VA++G +G+GK+T + ++ L P G+I DG +T L
Sbjct: 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER 75
Query: 524 LREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE-F-----ILSLP 576
R I +V + ++ ++ ++ N++ G + + V+E F +
Sbjct: 76 ARLGIAYVPEGRRIFPRLTVEENLLLGA--YARRDKEAQERDLEEVYELFPRLKERRNQR 133
Query: 577 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR-- 634
G LSGG++Q +AIARA++ P +LLLDE + L + V+ + A++
Sbjct: 134 AGT--------LSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKEL 182
Query: 635 NDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRL 682
+ T++++ + DR V+++GRI+ G AELL +
Sbjct: 183 RK-EGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDV 230
|
Length = 237 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 1e-19
Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 28/205 (13%)
Query: 483 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMD 541
++G SG GK+T + LL +P G I +DG +T++ I V Q L M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH--LRHINMVFQSYALFPHMT 58
Query: 542 IKSNIMYGCPKD-VKNEDIEWAAKQAY--VH--EFILSLPCGYETLVDDDLLSGGQKQRI 596
++ N+ +G V +I+ +A V EF P LSGGQ+QR+
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQ---------LSGGQQQRV 109
Query: 597 AIARAILRDPAILLLDEATSALD----SESEHYVKGVLHALRNDCKTKRTVIVIAHRLS- 651
A+ARA++ P ILLLDE SALD + + +K + L T + + H
Sbjct: 110 ALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL------GITFVFVTHDQEE 163
Query: 652 TIKAVDRIVVIDDGRIIEVGNHAEL 676
+ DRI ++ G+I ++G E+
Sbjct: 164 AMTMSDRIAIMRKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 2e-19
Identities = 56/226 (24%), Positives = 104/226 (46%), Gaps = 19/226 (8%)
Query: 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-LT 517
R + + V + A E+V I G++G+G+S V + L +P+ G+I ++G L
Sbjct: 266 KDRRGVTAVKD-VSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLG 324
Query: 518 DLDIRWLREK-IGFVGQEPQ----LLQMDIKSNIMYGC---PKDVKNEDIEWAAKQAYVH 569
L R R + +V ++ +L + + N++ G + ++ A + +
Sbjct: 325 RLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR 384
Query: 570 EFILSL---PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
E I + LSGG +Q++ +AR + R P +L+ + T LD + ++
Sbjct: 385 ELIEEFDVRAPSPDAPA--RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFI 442
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
L LR+ K V++I+ L I + DRI VI +GRI+ +
Sbjct: 443 HERLLELRDAGK---AVLLISEDLDEILELSDRIAVIYEGRIVGIV 485
|
Length = 501 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 2e-19
Identities = 60/204 (29%), Positives = 104/204 (50%), Gaps = 11/204 (5%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526
+L ++ +I + V ++G +GSGKST ++ LRL ++G I IDG + ++ R+
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRK 77
Query: 527 KIGFVGQEPQLLQMDIKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVD 584
G + Q+ + + N+ YG D E+I A++ + I P + LVD
Sbjct: 78 AFGVIPQKVFIFSGTFRKNLDPYGKWSD---EEIWKVAEEVGLKSVIEQFPGQLDFVLVD 134
Query: 585 DD-LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV 643
+LS G KQ + +AR++L ILLLDE ++ LD + ++ L DC TV
Sbjct: 135 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADC----TV 190
Query: 644 IVIAHRLSTIKAVDRIVVIDDGRI 667
I+ HR+ + R +VI++ ++
Sbjct: 191 ILSEHRIEAMLECQRFLVIEENKV 214
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (217), Expect = 2e-19
Identities = 76/226 (33%), Positives = 114/226 (50%), Gaps = 27/226 (11%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL--------TDL 519
LN++ + I N + A++G SG GKSTF+ L R+ + +G I I+G + +
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-IKIEGNVIYEGKNIYSNNF 81
Query: 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP----KDVK--NEDIEWAAKQAYVHEFIL 573
DI LR KIG V Q P M I NI YG KD K +E +E + K++ + +
Sbjct: 82 DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV- 140
Query: 574 SLPCGYETLVDDDL-LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 632
+ L + L LSGGQ+QR+ IAR + +P ++L+DE TSALD S G +
Sbjct: 141 -----KDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIS----TGKIEE 191
Query: 633 LRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
L + K T+I++ H + + DR +G I E + EL
Sbjct: 192 LIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237
|
Length = 254 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 3e-19
Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 25/238 (10%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYID 512
N F + S+ P L+++ L + +VAIVG +G GK++ ++ +L L SD + I
Sbjct: 619 NGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR 678
Query: 513 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK--NEDIEWAAKQAYVHE 570
G + +V Q + ++ NI++G P D + I+ A Q H+
Sbjct: 679 G-------------TVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQ---HD 722
Query: 571 FILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 628
L LP G T + + +SGGQKQR+++ARA+ + + + D+ SALD+ H +
Sbjct: 723 LDL-LPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA---HVGRQ 778
Query: 629 VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 686
V D +T +++ ++L + VDRI+++ +G I E G + EL + G L+ KL
Sbjct: 779 VFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKL 836
|
Length = 1622 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 3e-19
Identities = 69/238 (28%), Positives = 114/238 (47%), Gaps = 14/238 (5%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--DGQIYIDGFPLTDLDIR 522
V L+ + L + E V + G +G+GKST + +L +Y DG+IY G PL +IR
Sbjct: 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIR 73
Query: 523 WLREK-IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI--LSLPCG 578
I + QE L+ ++ + NI G + + + A + L L
Sbjct: 74 DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDAD 133
Query: 579 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638
T D GGQ+Q + IA+A+ + +L+LDE +S+L +E E + +L +R D K
Sbjct: 134 NVTRPVGD-YGGGQQQLVEIAKALNKQARLLILDEPSSSL-TEKE--TEILLDIIR-DLK 188
Query: 639 TKRTV-IVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTESL 694
+ I+H+L+ +KAV D I VI DG+ + + + + +V R+ SL
Sbjct: 189 AHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT-KDMSTMSEDDIITMMVGREITSL 245
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 3e-19
Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 29/226 (12%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525
ILN + L++ ++ A++G +G GKST + RL P G +++ P++ L R L
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75
Query: 526 EKIGFVGQEPQLLQMDIKSN--IMYG-----------CPKDVKNEDIEWAAKQAYVHEFI 572
++ + Q L I + YG +D N + A +Q ++
Sbjct: 76 RRLALLPQHH-LTPEGITVRELVAYGRSPWLSLWGRLSAED--NARVNQAMEQTRINHLA 132
Query: 573 LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 632
+ + D LSGGQ+QR +A + +D ++LLDE T+ LD + + ++
Sbjct: 133 -------DRRLTD--LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE 183
Query: 633 LRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 677
L K TV+ + H L+ + D +VV+ +G ++ G E++
Sbjct: 184 LNTQGK---TVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 3e-19
Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 35/214 (16%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS---DGQ 508
N++ +Y S V +V L I N++ A +G SG GKST + RL + P +G+
Sbjct: 15 NLNVYYGSFLAV---KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGK 71
Query: 509 IYIDGFPLTDLDIR--WLREKIGFVGQEPQLLQMDIKSNIMYGCP----KDVKNEDIEWA 562
+ G L D+ +R +IG V Q+P I NI YG K +E +E +
Sbjct: 72 VTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERS 131
Query: 563 AKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATS 616
+QA + + V D L LSGGQ+QR+ IARAI P ++L+DE S
Sbjct: 132 LRQAALWD-----------EVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCS 180
Query: 617 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 650
ALD S ++ ++H L K + T+I++ H +
Sbjct: 181 ALDPISTLRIEELMHEL----KEQYTIIIVTHNM 210
|
Length = 264 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 92.3 bits (229), Expect = 4e-19
Identities = 66/231 (28%), Positives = 119/231 (51%), Gaps = 30/231 (12%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525
P LN + +I +VA+VG G GKS+ ++ LL + +G +++ G
Sbjct: 652 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------ 699
Query: 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVK--NEDIEWAAKQAYVHEFILSLPCGYETLV 583
+ +V Q+ + ++ NI++G + K + +E A + LP G T +
Sbjct: 700 -SVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLE----ILPSGDRTEI 754
Query: 584 DDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSE-SEH---YVKGVLHALRNDC 637
+ LSGGQKQR+++ARA+ + I L D+ SA+D+ +H +V G L+N
Sbjct: 755 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKN-- 812
Query: 638 KTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 688
+T I++ H +S + VD I+V+ G+I E+G++ ELL + +A+ ++
Sbjct: 813 ---KTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLR 860
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 4e-19
Identities = 116/577 (20%), Positives = 218/577 (37%), Gaps = 87/577 (15%)
Query: 126 LIGR-DKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTS 184
L+ R ++W + +A + + I + + +A+ +V + L+L V+S
Sbjct: 6 LLLRQNRWPFISVMALSLASGALGIGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSS 65
Query: 185 GIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNV 244
I + L + + L + + L + LT+D + +S
Sbjct: 66 LISQLGLTTLGQHFIYKLRSEFIKKILDTPLER----IERLGSARLLAGLTSDVRNISFA 121
Query: 245 IGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQE 304
L +Q + L+ L+ + I+V+++G + A V
Sbjct: 122 F-----SRLPELVQAIILTLGSAAYLAYLSPKMFLLTV-VWIVVTIWGGFVLMARVYKH- 174
Query: 305 CNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW------- 357
M R TE+K Y+ LE + + A +
Sbjct: 175 ---------------MAAAR--ETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPD 217
Query: 358 ------NMSFITLYRS-----TQVMAVLLGG----MSIMIGQVSPEQLTKYVLYCEWLIY 402
++ + + +M + L G +++ +G S VL +L
Sbjct: 218 AQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRT 277
Query: 403 ATWRMVDNLSSLLQSIGATEKVFQL-----IDLLPSNQFLSEGVKLQRLMGHVQFVNISF 457
V L +LL + A K+ +L P Q + L+ N+ F
Sbjct: 278 PLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWKTLE-------LRNVRF 330
Query: 458 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517
Y + + LTI+ E+V ++G +GSGKST LL LY+P G+I +DG P++
Sbjct: 331 AYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVS 388
Query: 518 DLDIRWLREKIGFVGQE----PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 573
+ R+ V + QLL + K++ P+ ++ +W + H+
Sbjct: 389 AEQLEDYRKLFSAVFSDYHLFDQLLGPEGKAS-----PQLIE----KWLQRLELAHK--T 437
Query: 574 SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 633
SL G + + LS GQK+R+A+ A+L + IL+LDE + D + + L
Sbjct: 438 SLNDGRFSNLK---LSTGQKKRLALLLALLEERDILVLDEWAADQDP---AFRREFYQVL 491
Query: 634 RNDCKTK-RTVIVIAHRLSTIKAVDRIVVIDDGRIIE 669
K + +T+ I+H DR++ + +G++ E
Sbjct: 492 LPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 4e-19
Identities = 78/258 (30%), Positives = 117/258 (45%), Gaps = 58/258 (22%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 502
M ++ + Y + ++ + L + E + +VG SG GKST LLR L
Sbjct: 1 MAGLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKST----LLRMVAGLE 54
Query: 503 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG-----CPKDVKN 556
+ G+I+I G + +L+ R+ I V Q L M ++ N+ YG PK
Sbjct: 55 RITSGEIWIGGRVVNELEPA-DRD-IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIE 112
Query: 557 EDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEA 614
E + AA+ IL L E L+D LSGGQ+QR+A+ RAI+R+PA+ L DE
Sbjct: 113 ERVAEAAR-------ILEL----EPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP 161
Query: 615 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR-LST---------IKAV---DRIVV 661
S LD+ LR R I HR L T ++A+ DR+VV
Sbjct: 162 LSNLDA-----------KLRV---QMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVV 207
Query: 662 IDDGRIIEVGNHAELLHK 679
++ G ++G E+ K
Sbjct: 208 MNGGVAEQIGTPVEVYEK 225
|
Length = 356 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.5 bits (216), Expect = 4e-19
Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 29/240 (12%)
Query: 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-- 510
VN++ + + +L+ V + A V +++G +GSGK+TF+ L R+ + G Y
Sbjct: 25 VNLTLGFAGKT---VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSG 81
Query: 511 ---IDGFPLTDL-DIRWLREKIGFVGQEPQLLQMDIKSNIMYG--CPKDVKNEDIEWAAK 564
+ G + + D+ R ++G + Q P M I N++ G K V ++ A
Sbjct: 82 DVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA- 140
Query: 565 QAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSAL 618
QA + E G V D L LSGGQ+Q + +AR + +P +LLLDE TSAL
Sbjct: 141 QARLTE------VGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSAL 194
Query: 619 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
D + ++ + +L + + TVI++ H L+ + DR + DGR++E G +L
Sbjct: 195 DPTTTEKIEEFIRSLAD----RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 4e-19
Identities = 59/211 (27%), Positives = 109/211 (51%), Gaps = 13/211 (6%)
Query: 463 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY----IDGFPLTD 518
+ L+++ + I ++ IVG G GKS+ + +L + +G+++ + P +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 578
R + + Q+P LL ++ NI +G P + + + I LP G
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGSP--FNKQRYKAVTDACSLQPDIDLLPFG 129
Query: 579 YETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSE-SEHYVK-GVLHALR 634
+T + + LSGGQ+QRI +ARA+ ++ I+ LD+ SALD S+H ++ G+L L+
Sbjct: 130 DQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ 189
Query: 635 NDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG 665
+D KRT++++ H+L + D I+ + DG
Sbjct: 190 DD---KRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 4e-19
Identities = 73/247 (29%), Positives = 113/247 (45%), Gaps = 47/247 (19%)
Query: 458 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFP 515
H IL V LT++ EV AI+G +GSGKST ++ YE ++G+I DG
Sbjct: 10 HVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGED 69
Query: 516 LTDLDI--RWLREKIGFVGQEP---------QLLQMDIKSNIMYGCPKDVKNEDIEWAAK 564
+ +L R R I Q P L+ N G + E I+ +
Sbjct: 70 ILELSPDER-ARAGIFLAFQYPVEIPGVTNSDFLR--AAMNARRGARGILP-EFIKELKE 125
Query: 565 QAYVHEFILSLPCGYETL-VDDDLL--------SGGQKQRIAIARAILRDPAILLLDEAT 615
+A E L +D++ L SGG+K+R I + +L +P + +LDE
Sbjct: 126 KA-------------ELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPD 172
Query: 616 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR---LSTIKAVDRIVVIDDGRIIEVGN 672
S LD ++ V ++ALR + R V++I H L IK D++ V+ DGRI++ G+
Sbjct: 173 SGLDIDALKIVAEGINALREE---GRGVLIITHYQRLLDYIKP-DKVHVLYDGRIVKSGD 228
Query: 673 HAELLHK 679
EL +
Sbjct: 229 -PELAEE 234
|
Length = 251 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 5e-19
Identities = 74/244 (30%), Positives = 120/244 (49%), Gaps = 40/244 (16%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV---NLLLRLYEPS- 505
++ VN+ +Y S ++ V L I N V A++G SG GKST + N LL L E +
Sbjct: 5 IETVNLRVYYGSNH---VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEAR 61
Query: 506 -DGQIYIDGFPL--TDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC-------PKDV 554
+G++ + G + D+D +R ++G V Q P + I N+ G K
Sbjct: 62 VEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE 121
Query: 555 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAI 608
+E +EWA K+A + + V D L LSGGQ+QR+ IARA+ P I
Sbjct: 122 LDERVEWALKKAALWD-----------EVKDRLNDYPSNLSGGQRQRLVIARALAMKPKI 170
Query: 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 667
LL+DE T+ +D ++ +L L+ + T++++ H + V D + + G++
Sbjct: 171 LLMDEPTANIDPVGTAKIEELLFELKKE----YTIVLVTHSPAQAARVSDYVAFLYLGKL 226
Query: 668 IEVG 671
IEVG
Sbjct: 227 IEVG 230
|
Length = 253 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 6e-19
Identities = 68/220 (30%), Positives = 107/220 (48%), Gaps = 27/220 (12%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTD--LD 520
L + ++I N V A++G SG GKST + R+ + G I +G + D D
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-----KDVKNED--IEWAAKQAYVHEFIL 573
+ LR KIG V Q P I N+ YG P K+ K D +E + K A + + +
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYG-PRIHGEKNKKTLDTIVEKSLKGAALWDEV- 139
Query: 574 SLPCGYETLVDDDL-LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 632
+ L D L LSGGQ+QR+ IAR + +P ++L+DE SALD + ++ ++
Sbjct: 140 -----KDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194
Query: 633 LRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
L+ + TVI++ H + V D + G++IE
Sbjct: 195 LKKE----YTVIIVTHNMQQAARVSDYTGFMYLGKLIEFD 230
|
Length = 253 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 9e-19
Identities = 75/236 (31%), Positives = 114/236 (48%), Gaps = 27/236 (11%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N+SF P R +L+ + LT A +V ++G +GSGKST + +L R PS+G+I +D
Sbjct: 16 NVSFRVPGRT---LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72
Query: 514 FPLTDLDIRWLREKIGFVGQE-PQLLQMDIKSNIMYGCPKDVKNEDIEW--------AAK 564
PL + K+ ++ Q+ P M ++ + G W AA
Sbjct: 73 QPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIG--------RYPWHGALGRFGAAD 124
Query: 565 QAYVHEFI--LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622
+ V E I + L LVD LSGG++QR IA + +D LLLDE TSALD
Sbjct: 125 REKVEEAISLVGLKPLAHRLVDS--LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182
Query: 623 EHYVKGVLHALRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 677
+ V ++H L + TVI + H ++ + D +V + G +I G AEL+
Sbjct: 183 QVDVLALVHRLSQ--ERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-18
Identities = 68/206 (33%), Positives = 108/206 (52%), Gaps = 4/206 (1%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526
+LN + L I + ++VA++G SGSGK+T + ++ L + G I G ++ L R
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR--DR 74
Query: 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 585
K+GFV Q L + M + NI +G + E AA +A V + + + +
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP 134
Query: 586 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 645
LSGGQKQR+A+ARA+ +P ILLLDE ALD++ ++ L L + K +V V
Sbjct: 135 AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFT-SVFV 193
Query: 646 IAHRLSTIKAVDRIVVIDDGRIIEVG 671
+ ++ DR+VV+ G I + G
Sbjct: 194 THDQEEAMEVADRVVVMSQGNIEQAG 219
|
Length = 353 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 1e-18
Identities = 71/238 (29%), Positives = 123/238 (51%), Gaps = 24/238 (10%)
Query: 447 MGHVQFVNISFHYPSRPTV--PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504
MG + N+S+ Y + L V LTIE A +G +GSGKST + LL L+ P
Sbjct: 1 MG-INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP 59
Query: 505 SDGQIYIDGFPLT----DLDIRWLREKIGFVGQ--EPQLLQMDIKSNIMYGCPKD--VKN 556
+ G + +D +T + DI+ +R+K+G V Q E QL + + ++ +G P++ V
Sbjct: 60 TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFG-PQNFGVSQ 118
Query: 557 EDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEA 614
E+ E A++ L+L E+L + + LSGGQ +R+AIA + +P IL+LDE
Sbjct: 119 EEAEALAREK------LALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEP 172
Query: 615 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVG 671
T+ LD + + + L T++++ H + + D + V++ G+++ G
Sbjct: 173 TAGLDPKGRKELMTLFKKLHQS---GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSG 227
|
Length = 280 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 1e-18
Identities = 66/224 (29%), Positives = 113/224 (50%), Gaps = 20/224 (8%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT----DLDIRW 523
L V ++I + VAI+G +GSGKST + L L +P+ G + I +T + ++
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 524 LREKIGFVGQ--EPQLLQMDIKSNIMYGCPKD--VKNEDIEWAAKQAYVHEFILSLPCGY 579
LR+K+G V Q E QL + ++ +I +G P + V ED + A++ ++ LP
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFG-PMNFGVSEEDAKQKAREMI---ELVGLP--- 135
Query: 580 ETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 637
E L+ LSGGQ +R+AIA + +P +L+LDE T+ LD + + + + L
Sbjct: 136 EELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK-- 193
Query: 638 KTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 680
+ T +++ H + D+IVV+ G + G E+
Sbjct: 194 EKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237
|
Length = 290 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 2e-18
Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 27/198 (13%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID-GFPLTDL----- 519
P+L +V LT+ A E VA+ G SG+GKST + L Y P G+I + DL
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 520 -DIRWLREK-IGFVGQ----EPQLLQMDI--KSNIMYGCPKDVKNEDIEWAAKQAYVHEF 571
++ +R K IG+V Q P++ +++ + + G P++ + + E
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPER 141
Query: 572 ILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 631
+ LP SGG++QR+ IAR + D ILLLDE T++LD+ + V ++
Sbjct: 142 LWHLP--------PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI- 192
Query: 632 ALRNDCKTKRTVIV-IAH 648
+ K + ++ I H
Sbjct: 193 ---AEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 2e-18
Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 15/231 (6%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
+ +S Y + V N + T+ + E ++G +G+GKST ++L + P G+I
Sbjct: 42 IDLAGVSKSYGDKAVV---NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQL-LQMDIKSN-IMYGCPKDVKNEDIEWAAKQAY 567
+ G P+ R R +IG V Q L L+ ++ N +++G + +IE A
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIE--AVIPS 155
Query: 568 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
+ EF L + V D LSGG K+R+ +ARA++ DP +L+LDE T+ LD + H +
Sbjct: 156 LLEFA-RLESKADARVSD--LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 212
Query: 628 GVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
L +L K T+++ H + + + DR+ V++ GR I G L+
Sbjct: 213 ERLRSLLARGK---TILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260
|
Length = 340 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 2e-18
Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 15/231 (6%)
Query: 461 SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520
S I++ V +T + ++G +GSGKST + LL P G + + G L L
Sbjct: 10 SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS 69
Query: 521 IRWLREKIGFVGQE-PQLLQMDIKSNIMYG-CPKDVKNEDIEWAAKQAYVHEFILSL--P 576
R ++ V Q+ + + ++ + G P WA + +
Sbjct: 70 RRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSL-----WAGDSPHDAAVVDRALAR 124
Query: 577 CGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 634
L D D+ LSGG++QR+ +ARA+ ++P +LLLDE T+ LD ++ L +R
Sbjct: 125 TELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQL---ETLALVR 181
Query: 635 NDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYA 684
T TV+ H L+ + D +VV+D GR++ G E+L + A
Sbjct: 182 ELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRA 232
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 2e-18
Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 27/237 (11%)
Query: 461 SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520
+L+ V L++ +V +VG +G+GK+T + + P+ G + + G + L
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 521 IRWLREKIGFVGQEPQL-LQMDIKSNIMYG-CPK----DVKNED----IEWAAKQAYVHE 570
R ++ V Q+ L + D++ + G P D E +E A ++ V +
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ 131
Query: 571 FILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 628
F D + LSGG++QR+ +ARA+ + +LLLDE T++LD H V+
Sbjct: 132 F-----------ADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD--INHQVR- 177
Query: 629 VLHALRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA 684
L +R +T + H L + D +V++ DGR+ G A++L L A
Sbjct: 178 TLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRA 234
|
Length = 402 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 3e-18
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 33/224 (14%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-R 525
IL V L + EV ++G +G GK+T + L+ L G I +DG +T L R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 526 EKIGFV--GQE--PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSL-PCGYE 580
I +V G+E P+L ++ N++ G + + + I L P
Sbjct: 75 AGIAYVPQGREIFPRL---TVEENLLTGLAA--------LPRRSRKIPDEIYELFP---- 119
Query: 581 TLVDDDL-------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 633
V ++ LSGGQ+Q++AIARA++ P +LLLDE T + + V+ L
Sbjct: 120 --VLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRL 177
Query: 634 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 676
R + ++++ L + + DR V++ GR++ G EL
Sbjct: 178 RAE--GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 3e-18
Identities = 58/217 (26%), Positives = 111/217 (51%), Gaps = 21/217 (9%)
Query: 461 SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520
S V L V LT+ E+ A++G +G+GKST + +L ++EP+ G I I+ LD
Sbjct: 14 SFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD 73
Query: 521 IRWLRE-KIGFVGQEPQLL-QMDIKSNIMYG-------CPKDVKNEDIEWAA--KQAYVH 569
+ + IG + QE ++ ++ + N+ G C ++ I+W +A +
Sbjct: 74 HKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNI----IDWREMRVRAAMM 129
Query: 570 EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 629
+ L + V + LS KQ + IA+ ++ D ++++DE TS+L ++ Y+ +
Sbjct: 130 LLRVGLKVDLDEKVAN--LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI 187
Query: 630 LHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDG 665
++ LR + ++ I+H+L+ I+ + DR V+ DG
Sbjct: 188 MNQLRKEGT---AIVYISHKLAEIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 4e-18
Identities = 62/230 (26%), Positives = 115/230 (50%), Gaps = 28/230 (12%)
Query: 462 RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 521
R TV + V T+ + +AI+G +GSGKST +L + EP+ G+I I+ PL D
Sbjct: 23 RQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82
Query: 522 RWLREKIGFVGQEP-----------QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE 570
+ ++I + Q+P Q+L ++ N + + + I + +
Sbjct: 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQ--RRKQIFETLRMVGL-- 138
Query: 571 FILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 630
LP +L+ GQKQR+A+ARA++ P I++ DEA ++LD ++ L
Sbjct: 139 ----LP--DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMS----MRSQL 188
Query: 631 HALRNDCKTKRTV--IVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
L + + K+ + I + + IK + D+++V+ +G ++E G+ A++L
Sbjct: 189 INLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 4e-18
Identities = 65/203 (32%), Positives = 99/203 (48%), Gaps = 36/203 (17%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS---DGQIYIDGFPLTD--LD 520
L ++ L I NEV AI+G SG GKST++ L R+ E PS G+I + D
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-------KDVKNEDIEWAAKQAYVHEFIL 573
+ LR +G V Q+P I N+ YG P K +E +E + + A + +
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYG-PKIHGIKDKKTLDEIVEKSLRGAAIWD--- 155
Query: 574 SLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
+ D L LSGGQ+QR+ IAR + +P ++L+DE TSALD S V+
Sbjct: 156 --------ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVE 207
Query: 628 GVLHALRNDCKTKRTVIVIAHRL 650
++ L K ++I++ H +
Sbjct: 208 ELVQEL----KKDYSIIIVTHNM 226
|
Length = 271 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 5e-18
Identities = 68/219 (31%), Positives = 116/219 (52%), Gaps = 25/219 (11%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-- 524
++ ++ T+ E + +VG SGSGKST LLRL S G+I+ DG PL +L+ R L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLP 359
Query: 525 -REKIGFVGQEPQLL---QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE 580
R +I V Q+P ++++ I G V + A ++ V + E
Sbjct: 360 VRHRIQVVFQDPNSSLNPRLNVLQIIEEGL--RVHQPTLSAAQREQQVIAVM------EE 411
Query: 581 TLVDDDL-------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 633
+D + SGGQ+QRIAIARA++ P++++LDE TS+LD + + +L +L
Sbjct: 412 VGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSL 471
Query: 634 RNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
+ K + + I+H L ++A+ +++V+ G ++E G
Sbjct: 472 QQ--KHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG 508
|
Length = 529 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 7e-18
Identities = 80/252 (31%), Positives = 120/252 (47%), Gaps = 44/252 (17%)
Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS- 505
HV N S +Y V +N I + V AI+G SG GKSTF+ + R+ + PS
Sbjct: 39 HVVAKNFSIYYGEFEAVKKVN---ADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSC 95
Query: 506 --DGQIYIDG----FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-----DV 554
G + DG TD + LR+KIG V Q+P I NI YG P+ D
Sbjct: 96 HTTGALMFDGEDIYGKFTDEVL--LRKKIGMVFQKPNPFPKSIFDNIAYG-PRLHGINDK 152
Query: 555 K--NEDIEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDP 606
K E +E + ++A + + V D L LSGGQ+QR+ +AR + +P
Sbjct: 153 KQLEEIVEKSLRKAALWD-----------EVSDRLDKNALGLSGGQQQRLCVARTLAVEP 201
Query: 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDG 665
ILLLDE TSALD ++ ++ ++ LR T++++ H + V D + +G
Sbjct: 202 EILLLDEPTSALDPKATAKIEDLIQELRG----SYTIMIVTHNMQQASRVSDYTMFFYEG 257
Query: 666 RIIEVGNHAELL 677
++E A+L
Sbjct: 258 VLVEHAPTAQLF 269
|
Length = 286 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 8e-18
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 27/217 (12%)
Query: 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRWLR 525
+ L+++ EV+A+VG SGSGKS +L L P + G+I +DG PL L IR
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR- 62
Query: 526 EKIGFVGQEPQ-----LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI-LSLPCGY 579
I + Q P+ L M ++ + K A+ + + LP
Sbjct: 63 -HIATIMQNPRTAFNPLFTM--GNHAIETLRSLGKLSK---QARALILEALEAVGLPDPE 116
Query: 580 ETLVDDDL----LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 635
E L LSGG QR+ IA A+L +P L+ DE T+ LD ++ V +L LR
Sbjct: 117 EVL---KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 636 DCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVG 671
T +++I H L + + D + V+DDGRI+E G
Sbjct: 174 LFGT--GILLITHDLGVVARIADEVAVMDDGRIVERG 208
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 9e-18
Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 46/235 (19%)
Query: 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK- 527
+ V L + E + +VG SG GKSTF ++ L + +DG++ G L + R
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVR 97
Query: 528 --IGFVGQEPQLLQMDIKSNI---------MYGCPK----DVKNEDIEWAAK-------- 564
I + Q+P L ++ + I Y PK +VK+ K
Sbjct: 98 SDIQMIFQDP-LASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLI 155
Query: 565 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624
Y HEF SGGQ QRI IARA++ +P +++ DE SALD +
Sbjct: 156 NRYPHEF-----------------SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQA 198
Query: 625 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 678
V +L L+ + ++I IAH L+ +K + DR++V+ G +E+G + E+ H
Sbjct: 199 QVVNLLQQLQREMGL--SLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYH 251
|
Length = 331 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 1e-17
Identities = 68/255 (26%), Positives = 117/255 (45%), Gaps = 26/255 (10%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
++ F I +P V L+ + A +V A++G +G+GKST + +L Y+P
Sbjct: 2 SPYLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA 58
Query: 507 GQIYIDGFPLTDLDIR-WLREKIGFVGQEPQLL-QMDIKSNIMYG-CPKDV----KNEDI 559
G I IDG + L + + QE L+ +M + N+ G P +
Sbjct: 59 GSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN 118
Query: 560 EWAAKQ-AYVHEFI-LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 617
A +Q ++ I P Y LS GQ+Q + IA+A+ R+ ++ DE TS+
Sbjct: 119 YEAREQLEHLGVDIDPDTPLKY--------LSIGQRQMVEIAKALARNARVIAFDEPTSS 170
Query: 618 LDS-ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAE 675
L + E E + V+ LR + R ++ ++HR+ I A+ D I V DGR + +
Sbjct: 171 LSAREIEQLFR-VIRELRAE---GRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMA 226
Query: 676 LLHKGRLYAKLVKRQ 690
+ + +L +V R+
Sbjct: 227 QVDRDQLVQAMVGRE 241
|
Length = 501 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 2e-17
Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 26/221 (11%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525
++ V LTI E+ A++G SG GKST + +L +P+ GQI +DG L+ + +
Sbjct: 33 HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQ 90
Query: 526 EKIGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCGY 579
I + Q L M ++ NI +G PK + ++ EF P
Sbjct: 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP--- 147
Query: 580 ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE----SEHYVKGVLHALRN 635
LSGGQ+QR+A+AR++ + P +LLLDE ALD + + V +L +
Sbjct: 148 ------HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGV 201
Query: 636 DCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 676
C V+V + + RI +++ G+ +++G E+
Sbjct: 202 TC-----VMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
Length = 377 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 2e-17
Identities = 66/227 (29%), Positives = 110/227 (48%), Gaps = 24/227 (10%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N+ F P+L ++ L IE E++AI G +GSGK++ + L+L EPS+G+I G
Sbjct: 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG 98
Query: 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFIL 573
+I F Q ++ IK NI++G D + K + E I
Sbjct: 99 -------------RISFSSQFSWIMPGTIKENIIFGVSYD--EYRYKSVVKACQLEEDIT 143
Query: 574 SLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESEHYVKGV 629
P T++ + LSGGQ+ RI++ARA+ +D + LLD LD +E E + V
Sbjct: 144 KFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCV 203
Query: 630 LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 676
+ N +T I++ ++ +K D+I+++ +G G +EL
Sbjct: 204 CKLMAN-----KTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 2e-17
Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 33/208 (15%)
Query: 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510
Q ++ Y +P L + LT+E+ E++ ++G SG GK+T +NL+ G I
Sbjct: 3 QISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT 59
Query: 511 IDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDIEWAAKQA-- 566
+DG P+ E+ G V Q LL +++ N+ +G V+ A Q
Sbjct: 60 LDGKPVEGPGA----ER-GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLK 114
Query: 567 ------YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
+I L SGGQ+QR+ IARA+ +P +LLLDE ALD+
Sbjct: 115 KVGLEGAEKRYIWQL-------------SGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAH 648
+ ++ +L L+ +T + V++I H
Sbjct: 162 FTREQMQTLL--LKLWQETGKQVLLITH 187
|
Length = 255 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 2e-17
Identities = 66/275 (24%), Positives = 109/275 (39%), Gaps = 32/275 (11%)
Query: 397 CEWLIY-----ATWRMV-DNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHV 450
W I A WR L+ Q++ A + D + +
Sbjct: 339 LSWFIDNYDAIADWRATLLRLAEFRQALEAAQM-----DTEKPARTGRRIDFDDNADHGI 393
Query: 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510
N+S P T +L+ + + E + I G SG+GK++ + L L+ G+I
Sbjct: 394 TLENLSLRTPDGQT--LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI- 450
Query: 511 IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY-GCPKDVKNEDIEWAAKQAYVH 569
P + F+ Q P L Q ++ + Y D + ++ + +
Sbjct: 451 --SMPAD--------SALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLG 500
Query: 570 EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 629
+ L E D +LSGG++QR+A AR +L P + LDEATSALD E+E +
Sbjct: 501 DLAERLD---EEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDR---L 554
Query: 630 LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664
L+ + TVI + HR + R + + D
Sbjct: 555 YQLLKEELPDA-TVISVGHRPTLWNFHSRQLELLD 588
|
Length = 604 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (202), Expect = 3e-17
Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 40/240 (16%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
++F+Y L ++ + + +V A++G SG GKSTF+ R+++ G Y
Sbjct: 21 KLNFYYGGYQA---LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGE 77
Query: 514 FPL---------TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP------KDVKNED 558
L ++D +R +I V Q+P I N+ YG + + E
Sbjct: 78 IILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEER 137
Query: 559 IEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLD 612
+E A + A + + V D L LSGGQ+QR+ IARA+ DP ILL D
Sbjct: 138 VENALRNAALWD-----------EVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFD 186
Query: 613 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
E TSALD + ++ ++ L+N K T++++ H + V D + G +IE G
Sbjct: 187 EPTSALDPIATASIEELISDLKN----KVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242
|
Length = 265 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 82.7 bits (204), Expect = 3e-17
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 12/208 (5%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526
++N + TI E ++G +G+GKST +LL + P G+I + G P+ R R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RARLARV 77
Query: 527 KIGFVGQEPQL-LQMDIKSNIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 584
IG V Q L + ++ N++ +G + +IE + EF L + V
Sbjct: 78 AIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEFA-RLESKADVRVA 134
Query: 585 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644
LSGG K+R+ +ARA++ DP +L+LDE T+ LD + H + L +L +T++
Sbjct: 135 L--LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL---LARGKTIL 189
Query: 645 VIAHRLSTI-KAVDRIVVIDDGRIIEVG 671
+ H + + DR+ V++ GR I G
Sbjct: 190 LTTHFMEEAERLCDRLCVLESGRKIAEG 217
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 3e-17
Identities = 73/219 (33%), Positives = 113/219 (51%), Gaps = 36/219 (16%)
Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 532
LTI+ +V ++G SG GK+T + L+ L +P++GQI+IDG +T I+ + I V
Sbjct: 27 LTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDICMVF 84
Query: 533 QEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLP--CGYET-LVDDDL 587
Q L M + N+ YG V E+ + K+A L L G+E VD
Sbjct: 85 QSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEA------LELVDLAGFEDRYVDQ-- 136
Query: 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK-R----- 641
+SGGQ+QR+A+ARA++ P +LL DE S LD+ LR + K R
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDAN-----------LRRSMREKIRELQQQ 185
Query: 642 ---TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 676
T + + H S AV D ++V++ G+I+++G+ EL
Sbjct: 186 FNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 4e-17
Identities = 67/240 (27%), Positives = 119/240 (49%), Gaps = 28/240 (11%)
Query: 459 YPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518
+ P V +L V +++ ++ ++G +GSGKST + LL +E S+G++
Sbjct: 668 FELEPKV-LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV--------- 717
Query: 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 578
W I +V Q+ ++ ++ NI++ +D + A + + + + L G
Sbjct: 718 ----WAERSIAYVPQQAWIMNATVRGNILFFDEEDA--ARLADAVRVSQLEADLAQLGGG 771
Query: 579 YETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSE-SEHYVKGV-LHALR 634
ET + + LSGGQK R+++ARA+ + + LLD+ SALD+ E V+ L AL
Sbjct: 772 LETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALA 831
Query: 635 NDCKTKRTVIVIA-HRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTES 693
KT+ V+A H++ + D +V + DGR+ G+ A+ + LYA L E+
Sbjct: 832 --GKTR----VLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTS-LYATLAAELKEN 884
|
Length = 1560 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 5e-17
Identities = 51/193 (26%), Positives = 93/193 (48%), Gaps = 26/193 (13%)
Query: 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 533
+I +EV+ I+G +G GK+TF+ +L + +P +G DI + + +
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG------------DIEIELDTVSY--- 65
Query: 534 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGG 591
+PQ ++ D + + +D+ + + Y I P E ++D ++ LSGG
Sbjct: 66 KPQYIKADYEGTV-----RDLLSSITKDFYTHPYFKTEIAK-PLQIEQILDREVPELSGG 119
Query: 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 651
+ QR+AIA + +D I LLDE ++ LD E V+ R ++T V+ H +
Sbjct: 120 ELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR--RFAENNEKTAFVVEHDII 177
Query: 652 TIKAV-DRIVVID 663
I + DR++V +
Sbjct: 178 MIDYLADRLIVFE 190
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (199), Expect = 6e-17
Identities = 73/264 (27%), Positives = 120/264 (45%), Gaps = 45/264 (17%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS-- 505
V+ ++ H+ V V + N V AI+G SG GKST + + R+++ PS
Sbjct: 5 VKLEQLNVHFGKNHAV---KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSAR 61
Query: 506 -DGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLL-QMDIKSNIMYG------CPKDVK 555
G+I +D + D +D +R ++G V Q+P M I N++ G +
Sbjct: 62 VTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEA 121
Query: 556 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAIL 609
+E +E + K+ + + V D L LSGGQ+QR+ IAR I P ++
Sbjct: 122 DEIVESSLKRVALWD-----------EVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVI 170
Query: 610 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 668
L+DE SALD S ++ ++ L K K T+I++ H + V D G ++
Sbjct: 171 LMDEPASALDPISTLKIEELIEEL----KEKYTIIIVTHNMQQAARVSDYTAFFYMGDLV 226
Query: 669 EVGNHAELLHKGRLYAKLVKRQTE 692
E G +++ K+QTE
Sbjct: 227 ECG------ETKKIFTTPEKKQTE 244
|
Length = 252 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 6e-17
Identities = 59/223 (26%), Positives = 122/223 (54%), Gaps = 24/223 (10%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWL 524
++N V L + + E+V ++G +G+GK+T +++ L P G+I +D +T L + +
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77
Query: 525 REKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQ----AYVHEFILSLPCGY 579
R IG++ QE + ++ ++ NIM +++ +D++ A ++ A + EF +
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIM--AVLEIREKDLKKAERKEELDALLEEFHI------ 129
Query: 580 ETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 637
L D LSGG+++R+ IARA+ +P +LLDE + +D + ++ ++ L++
Sbjct: 130 THLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-- 187
Query: 638 KTKRTV-IVIA-HRL-STIKAVDRIVVIDDGRIIEVGNHAELL 677
R + ++I H + T+ DR +I DG+++ G+ E++
Sbjct: 188 ---RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227
|
Length = 243 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 1e-16
Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 15/210 (7%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLRE 526
+ V T+ A E++ I GL G+G++ L S G+I +DG P+ R ++
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
Query: 527 KIGFVGQEPQ----LLQMDIKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFILSL---PCG 578
I +V ++ + +L M I NI + + + I+ ++A +I L
Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394
Query: 579 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638
E + LSGG +Q++ +AR + DP +L+LDE T +D ++ + ++ L
Sbjct: 395 PEQPIG--TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL---AA 449
Query: 639 TKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 667
+ +++I+ L + + DRI+V+ +GRI
Sbjct: 450 EGKAILMISSELPELLGLSDRILVMREGRI 479
|
Length = 500 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 1e-16
Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 43/246 (17%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PS---DGQ 508
N++ Y + V +V I +V A++G SG GKST + L R+ + G+
Sbjct: 18 NVTISYGTFEAV---KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGR 74
Query: 509 IYIDGFPLTD--LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP----KDVKNEDIEWA 562
+ DG L D +D +R +IG V Q+P I NI +G +E +E +
Sbjct: 75 VLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERS 134
Query: 563 AKQAYVHEFILSLPC-------GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 615
++A V + C GY LSGGQ+QR+ IAR I +P ++L+DE
Sbjct: 135 LRKAAVWD-----ECKDKLNESGYS-------LSGGQQQRLCIARTIAIEPEVILMDEPC 182
Query: 616 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAH------RLSTIKAVDRIVVIDDGRIIE 669
SALD S ++ +H L+ + T++++ H R+S + A ++ G +
Sbjct: 183 SALDPISTLKIEETMHELKKNF----TIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGK 238
Query: 670 VGNHAE 675
VG E
Sbjct: 239 VGYLVE 244
|
Length = 269 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 1e-16
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 19/164 (11%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525
+ + + T+ A E + I G +G+GK+T + +L L P G++Y G P+ +
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQN-VRESYH 74
Query: 526 EKIGFVGQEPQL-LQMDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 579
+ + ++G +P + ++ N+ +G N W A + LP G
Sbjct: 75 QALLYLGHQPGIKTELTALENLHFWQRFHGS----GNAATIWEALAQVGLAGLEDLPVGQ 130
Query: 580 ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
LS GQ++R+A+AR L + +LDE +ALD E
Sbjct: 131 --------LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV 166
|
Length = 209 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 2e-16
Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 43/234 (18%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526
+L+ V L + EV+AI+G +G+GKST + L P G++ ++G PL L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 527 KIGFVGQEPQL---------LQMDIKSNIMYGCPKDVKNEDIEWAAK-------QAYVHE 570
+ Q L +QM I + ++ ED AA+
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQM---GRIPHRSGRE-PEEDERIAAQALAATDLSGLAGR 131
Query: 571 FILSLPCGYETLVDDDLLSGGQKQRIAIAR------AILRDPAILLLDEATSALDSESEH 624
+L SGG++QR+ +AR + L LDE TSALD +H
Sbjct: 132 DYRTL-------------SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQH 178
Query: 625 YVKGVLHALRNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 677
+ + L + V+ + H L+ + DRIV++ GR+I G+ ++L
Sbjct: 179 HTLRLARQL---AREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-16
Identities = 61/215 (28%), Positives = 92/215 (42%), Gaps = 53/215 (24%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ N+S P +L + I+ + + I G SG+GKS+ L L+ G+I
Sbjct: 1 IELENLSLATPDGR--VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 569
+ E + F+ Q P L ++ ++Y P W
Sbjct: 59 GMPE-----------GEDLLFLPQRPYLPLGTLREQLIY--P---------W-------- 88
Query: 570 EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 629
DD+LSGG++QR+A AR +L P + LDEATSALD ESE + +
Sbjct: 89 ---------------DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQL 133
Query: 630 LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664
L L TVI + HR S K DR++ +D
Sbjct: 134 LKEL------GITVISVGHRPSLWKFHDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 2e-16
Identities = 63/233 (27%), Positives = 113/233 (48%), Gaps = 37/233 (15%)
Query: 452 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511
F N S + P+L ++ +E +++A+ G +GSGKS+ + +++ EPS+G+I
Sbjct: 431 FSNFSLY-----VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKH 485
Query: 512 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEW----AAKQAY 567
G +I F Q ++ IK NI++G D E+ K
Sbjct: 486 SG-------------RISFSPQTSWIMPGTIKDNIIFGLSYD------EYRYTSVIKACQ 526
Query: 568 VHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALD--SESE 623
+ E I P +T++ + LSGGQ+ RI++ARA+ +D + LLD + LD +E E
Sbjct: 527 LEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKE 586
Query: 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 676
+ + + N +T I++ +L +K D+I+++ +G G +EL
Sbjct: 587 IFESCLCKLMSN-----KTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (194), Expect = 2e-16
Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 37/236 (15%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-------- 518
+L ++ + ++ AI+G SG GKST + L R+ + G ++G L D
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA-RLEGAVLLDNENIYSPN 77
Query: 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYG------CPKDVKNEDIEWAAKQAYVHEFI 572
LD+ LR+++G V Q+P I N+ +G + +E +E + +QA + +
Sbjct: 78 LDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWD-- 135
Query: 573 LSLPCGYETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
V D+L LSGGQ+QR+ IAR + +P ++L+DE SALD S +
Sbjct: 136 ---------EVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRI 186
Query: 627 KGVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELLHKGR 681
+ ++ L K T+ ++ H + +A D + G ++E G E+ + R
Sbjct: 187 EELMQEL----KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPR 238
|
Length = 251 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 3e-16
Identities = 68/255 (26%), Positives = 113/255 (44%), Gaps = 51/255 (20%)
Query: 435 QFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 494
+F G +L +L+ ++F N+S Y +L + I+ + +AIVG +G+GKST
Sbjct: 309 RFPPPGKRLGKLV--LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTL 364
Query: 495 VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE--KIGFVGQEPQLLQMD--IKSNIMYGC 550
+ LL P G + + E KIG+ Q L D + + G
Sbjct: 365 LKLLAGELGPLSGTV-------------KVGETVKIGYFDQHRDELDPDKTVLEELSEGF 411
Query: 551 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL------LSGGQKQRIAIARAILR 604
P + E +AY+ F + +D LSGG+K R+ +A+ +L+
Sbjct: 412 PDGD---EQEV---RAYLGRFGFT---------GEDQEKPVGVLSGGEKARLLLAKLLLQ 456
Query: 605 DPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVI 662
P +LLLDE T+ LD ES L AL + + TV++++H + V RI ++
Sbjct: 457 PPNLLLLDEPTNHLDIES----LEALEEALLD---FEGTVLLVSHDRYFLDRVATRIWLV 509
Query: 663 DDGRIIEVGNHAELL 677
+D G + + L
Sbjct: 510 EDKVEEFEGGYEDYL 524
|
Length = 530 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 3e-16
Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 34/231 (14%)
Query: 449 HVQFVNISF--HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
+V V+ +F H +P+L +V L++ A E V + G SGSGKST + L Y P +
Sbjct: 6 NVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE 65
Query: 507 GQIYID----------GFPLTDLDIRWLREKIGFVGQ----EPQLLQMDIKSN--IMYGC 550
GQI + P L++R R IG+V Q P++ +D+ + + G
Sbjct: 66 GQILVRHEGEWVDLVTAEPREVLEVR--RTTIGYVSQFLRVIPRVSALDVVAEPLLARGV 123
Query: 551 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 610
P++V + + E + SL SGG++QR+ IAR + D ILL
Sbjct: 124 PREVARAKAADLLTRLNLPERLWSLAPA--------TFSGGEQQRVNIARGFIVDYPILL 175
Query: 611 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV-IAHRLSTIKAV-DRI 659
LDE T++LD+ + + V+ L + K + +V I H +AV DR+
Sbjct: 176 LDEPTASLDATN----RAVVVELIREAKARGAALVGIFHDEEVREAVADRL 222
|
Length = 235 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 3e-16
Identities = 63/207 (30%), Positives = 107/207 (51%), Gaps = 13/207 (6%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------D 520
+L++V +I E++AIVG SGSGKST ++LL L P+ G + +G P++ L +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE 580
+R +K+GF+ Q LL D + P + + +A E + ++ +
Sbjct: 84 LR--NQKLGFIYQFHHLLP-DFTALENVAMPLLIGKKKPAEINSRA--LEMLAAVGLEHR 138
Query: 581 TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK 640
LSGG++QR+AIARA++ +P ++L DE T LD+ + + +L L T
Sbjct: 139 ANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGT- 197
Query: 641 RTVIVIAHRLSTIKAVDRIVVIDDGRI 667
+V+ H L K + R + + DGR+
Sbjct: 198 -AFLVVTHDLQLAKRMSRQLEMRDGRL 223
|
Length = 233 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 4e-16
Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 11/157 (7%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRW 523
+L +V TI E+V ++G SG GKST ++ ++ G+++++ L L
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA- 75
Query: 524 LREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 582
+ +IG + Q+ L + + N+++ P +K AA A +
Sbjct: 76 -QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQ---- 130
Query: 583 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619
D LSGGQ+ R+A+ RA+L P LLLDE S LD
Sbjct: 131 -DPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 4e-16
Identities = 63/243 (25%), Positives = 120/243 (49%), Gaps = 33/243 (13%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
+ N+S Y ++ +L+ V L I + +I+G +G+GKST ++++ RL + G+I
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQL-LQMDIKSNIMYG-CP----------KDVKNE 557
IDG LT + L +K+ + QE + ++ ++ + +G P + + NE
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 558 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 617
IE+ + ++ D LSGGQ+QR IA + +D +LLDE +
Sbjct: 119 AIEYLHLEDLSDRYL-------------DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNN 165
Query: 618 LDSESEHYVKGVLHALRNDCKT-KRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 675
LD +H V ++ LR +T++V+ H ++ D IV + +G++++ G+ E
Sbjct: 166 LD--MKHSV-QIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDE 222
Query: 676 LLH 678
++
Sbjct: 223 IIQ 225
|
Length = 252 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 4e-16
Identities = 64/208 (30%), Positives = 104/208 (50%), Gaps = 11/208 (5%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW--- 523
IL V L ++ E +A++G SGSGKST + +L L + S G++ + G PL +D
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 524 LREK-IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 581
LR K +GFV Q L+ ++ N+ P ++ E + A + L G
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVEL--PALLRGESSRQSRNGAK--ALLEQLGLGKRL 140
Query: 582 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
LSGG++QR+A+ARA P +L DE T LD ++ + +L +L + T
Sbjct: 141 DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGT-- 198
Query: 642 TVIVIAHRLSTIKAVDRIVVIDDGRIIE 669
T+I++ H L DR + + +G++ E
Sbjct: 199 TLILVTHDLQLAARCDRRLRLVNGQLQE 226
|
Length = 228 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 4e-16
Identities = 65/262 (24%), Positives = 118/262 (45%), Gaps = 40/262 (15%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL--LRLYEPSDGQI-----------YID- 512
+L ++ TIE EV+ I+G SG+GKS +++L + YEP+ G+I Y++
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74
Query: 513 ----GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI---------MYGCPKDVKN--- 556
G P E++ F +L + I+ I +YG + N
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRR-RIRKRIAIMLQRTFALYGDDTVLDNVLE 133
Query: 557 --EDIEWAAKQAY--VHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRDPAILLL 611
E+I + K+A + I + + T + DL SGG+KQR+ +AR + ++P + L
Sbjct: 134 ALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDL-SGGEKQRVVLARQLAKEPFLFLA 192
Query: 612 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEV 670
DE T LD ++ V L + ++++ +H I D+ + +++G I E
Sbjct: 193 DEPTGTLDPQTAKLVHNALEEAVKA--SGISMVLTSHWPEVIEDLSDKAIWLENGEIKEE 250
Query: 671 GNHAELLHKGRLYAKLVKRQTE 692
G E++ V+++ E
Sbjct: 251 GTPDEVVAVFMEGVSEVEKECE 272
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 5e-16
Identities = 62/246 (25%), Positives = 127/246 (51%), Gaps = 27/246 (10%)
Query: 450 VQFVNISFHYPS--RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
++ N+S Y S R V +++V L ++ E+ IVG SG+GK+T ++ + EP+ G
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 508 QIYI----DGFPLTDL--DIRWLREK-IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDI 559
++ + + +T D R ++ IG + QE L + N+ ++ +E
Sbjct: 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDE-- 397
Query: 560 EWAAKQAYVHEFILSLPCGY-----ETLVDD--DLLSGGQKQRIAIARAILRDPAILLLD 612
A+ V + G+ E ++D D LS G++ R+A+A+ ++++P I++LD
Sbjct: 398 --LARMKAVITLKMV---GFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILD 452
Query: 613 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
E T +D ++ V + R + ++T I+++H + + V DR ++ DG+I+++G
Sbjct: 453 EPTGTMDPITKVDVTHSILKAREE--MEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510
Query: 672 NHAELL 677
+ E++
Sbjct: 511 DPEEIV 516
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 5e-16
Identities = 61/233 (26%), Positives = 111/233 (47%), Gaps = 26/233 (11%)
Query: 456 SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515
F + ++ + + I E+V +G +G+GKST + +L L P+ G++ ++G
Sbjct: 28 HFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD 87
Query: 516 LTDLDIRWLREKIGFV-GQEPQL-----LQMDIKSN-IMYGCPKDVKNEDIEWAAKQAYV 568
+LR IG V GQ+ QL ++ ++Y P D E+A + ++
Sbjct: 88 PFRRREEYLR-SIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDD------EFAERLDFL 140
Query: 569 HEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
E IL L E + + LS GQ+ R +A A+L P +L LDE T LD ++
Sbjct: 141 TE-ILDL----EGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ--- 192
Query: 627 KGVLHALRNDCKTKRTVIVIA-HRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
+ L+ + ++ +++ H I + DR+++ID G+++ G A+L
Sbjct: 193 ANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245
|
Length = 325 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 5e-16
Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 15/202 (7%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
L V LTI+ E ++++G SG GKST +NL+ L +P+ G + ++G +T+ +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--- 57
Query: 528 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 586
V Q LL + ++ NI D D+ + ++A V E I +
Sbjct: 58 --VVFQNYSLLPWLTVRENIALAV--DRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG 113
Query: 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH-ALRNDCKTKR-TVI 644
LSGG KQR+AIARA+ P +LLLDE ALD+ +G L L + R TV+
Sbjct: 114 QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA----LTRGNLQEELMQIWEEHRVTVL 169
Query: 645 VIAHRL-STIKAVDRIVVIDDG 665
++ H + + DR+V++ +G
Sbjct: 170 MVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 5e-16
Identities = 58/223 (26%), Positives = 111/223 (49%), Gaps = 31/223 (13%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRW 523
+L +V + E++A++G SG+GK+T +N L G + ++G P+ D +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI---DAKE 96
Query: 524 LREKIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSL--- 575
+R +V Q+ + + ++ ++M+ P+ V ++ K+ V E + +L
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKE-----KRERVDEVLQALGLR 151
Query: 576 PC-----GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 630
C G V LSGG+++R+A A +L DP +L DE TS LDS + V+
Sbjct: 152 KCANTRIGVPGRVKG--LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYS---VV 206
Query: 631 HALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDDGRIIEVG 671
L+ + +T+I H+ S+ + D+I+++ +GR+ +G
Sbjct: 207 QVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLG 249
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 6e-16
Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 19/216 (8%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL---DIRWL 524
L V + E+ + G SG+GKST + L+ + PS G+I+ G +T L ++ +L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 525 REKIGFVGQEPQLLQMD--IKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 581
R +IG + Q+ LL MD + N+ + +DI A +L +
Sbjct: 78 RRQIGMIFQDHHLL-MDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPI 136
Query: 582 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE-SEHYVKGVLHALRNDCKTK 640
LSGG++QR+ IARA++ PA+LL DE T LD SE G+L +
Sbjct: 137 Q-----LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSE----GILRLFEEFNRVG 187
Query: 641 RTVIVIAHRLSTIKAVD-RIVVIDDGRIIEVGNHAE 675
TV++ H + I R++ + DG + G E
Sbjct: 188 VTVLMATHDIGLISRRSYRMLTLSDGHLHG-GVGGE 222
|
Length = 222 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 6e-16
Identities = 67/247 (27%), Positives = 116/247 (46%), Gaps = 35/247 (14%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQ 508
+++ +Y + V +N L ++ V A++G SG GK+TF+ + R+++ + G+
Sbjct: 9 DVNIYYGDKQAVKNVN---LDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGR 65
Query: 509 IYIDGFPLTD--LDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCP----------KDVK 555
I +DG + +D +R ++G V Q+P M + N++ G +V
Sbjct: 66 ILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVA 125
Query: 556 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 615
+ AA V + + + G LSGGQ+QR+ IARA+ +P ILL+DE T
Sbjct: 126 ERSLRGAALWDEVKDRLKTPATG---------LSGGQQQRLCIARALAVEPEILLMDEPT 176
Query: 616 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHA 674
SALD S ++ ++ D K T+I++ H + V D G ++E G
Sbjct: 177 SALDPASTARIEDLM----TDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTD 232
Query: 675 ELLHKGR 681
+L R
Sbjct: 233 QLFTNPR 239
|
Length = 252 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 8e-16
Identities = 68/234 (29%), Positives = 112/234 (47%), Gaps = 46/234 (19%)
Query: 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-DGFPLTDL------DI 521
++ L IE E+ ++GLSGSGKST + + L S G + + DG D+ +
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 522 RWLR-EKIGFVGQEPQLLQ-MDIKSNI-----MYGCPKDVKNEDI----------EWAAK 564
R LR ++ V Q+ LL ++ N+ M G PK + + + +WA +
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWADR 160
Query: 565 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624
E LSGG +QR+ +ARA + ILL+DE SALD
Sbjct: 161 --KPGE-----------------LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRT 201
Query: 625 YVKGVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELL 677
++ L L++ K K+T++ ++H L +K +RI +++ GRII+ G E++
Sbjct: 202 QLQDELLELQS--KLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 1e-15
Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 16/216 (7%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 524
V +L + T+ A EV A++G +G+GKST + ++ + P G + I G P L
Sbjct: 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPA-K 82
Query: 525 REKIG--FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 581
++G V QEP L + +K NI++G PK A + + + +L C +
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPKR--------QASMQKMKQLLAALGCQLDL 134
Query: 582 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
L +Q + I R ++RD IL+LDE T++L + + L
Sbjct: 135 DSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA---QGV 191
Query: 642 TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 676
++ I+H+L I+ + DRI V+ DG I G A+L
Sbjct: 192 GIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 1e-15
Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 45/218 (20%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526
+N++ LT+ N V ++G +G+GKST + ++ + P+ G+I DG P T D+
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLH---- 70
Query: 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 586
KIG + + P L + N+ A + VH +L LP ++ +D+
Sbjct: 71 KIGSLIESPPLYE-----NLT--------------ARENLKVHTTLLGLP---DSRIDEV 108
Query: 587 L---------------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 631
L S G KQR+ IA A+L P +L+LDE T+ LD ++ ++
Sbjct: 109 LNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIR 168
Query: 632 ALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 668
+ + TVI+ +H LS ++ + D I +I +G +
Sbjct: 169 SFP---EQGITVILSSHILSEVQQLADHIGIISEGVLG 203
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (190), Expect = 2e-15
Identities = 61/248 (24%), Positives = 126/248 (50%), Gaps = 33/248 (13%)
Query: 450 VQFVNISFHYPSRPTVPI----LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
++F +++ Y +P P L + L ++ A++G +GSGKST + L L +P+
Sbjct: 2 IKFEKVNYTY--QPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT 59
Query: 506 DGQIYIDGFPLTDL----DIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKD--VKNE 557
+G++ + ++ +I+ +R+K+G V Q P QL + + ++ +G P++ + E
Sbjct: 60 EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFG-PQNFGIPKE 118
Query: 558 DIEWAAKQ-----AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 612
E A + EF P +E LSGGQ +R+AIA + +P +L+LD
Sbjct: 119 KAEKIAAEKLEMVGLADEFWEKSP--FE-------LSGGQMRRVAIAGILAMEPEVLVLD 169
Query: 613 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVG 671
E T+ LD ++ + + ++ ++ +TV+++ H + + D + +++ G II G
Sbjct: 170 EPTAGLDPKARIEMMQLFESIH---QSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCG 226
Query: 672 NHAELLHK 679
+++ +
Sbjct: 227 TPSDVFQE 234
|
Length = 288 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 3e-15
Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 43/216 (19%)
Query: 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLDIRWLREKIGFVGQEP 535
E +++VG SGSGKST LLRL E G+I +G L+ ++ LR I F+ Q+P
Sbjct: 351 ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP 410
Query: 536 QLLQMDIKSNIMYGC----------PKDVKNEDIEWAAKQA---------YVHEFILSLP 576
+D + + P + W ++ Y HEF
Sbjct: 411 -YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEF----- 464
Query: 577 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 636
SGGQ+QRI IARA+ +P +++ DEA SALD + +L L+ D
Sbjct: 465 ------------SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD 512
Query: 637 CKTKRTVIVIAHRLSTIKAVD-RIVVIDDGRIIEVG 671
+ I+H ++ ++ + R+ V+ G+I+E+G
Sbjct: 513 FGI--AYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
Length = 623 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 3e-15
Identities = 52/216 (24%), Positives = 103/216 (47%), Gaps = 21/216 (9%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
L+ V + +V +G +G+GKST + ++ P G + + G + ++
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQRN 76
Query: 528 IGFVGQE-PQLLQMDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 581
IG++ + P L M ++ + +YG + + +E E I + E
Sbjct: 77 IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVE---------EMIELVGLRPEQ 127
Query: 582 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
LS G +QR+ +A+A++ DP +L+LDE T+ LD ++ V+ + D +
Sbjct: 128 HKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD----K 183
Query: 642 TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 676
T+I+ H + ++A+ DR+++I+ G+I+ EL
Sbjct: 184 TIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 6e-15
Identities = 61/225 (27%), Positives = 99/225 (44%), Gaps = 27/225 (12%)
Query: 452 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511
N++F Y + + LTI+ E++ ++G +GSGKST LL LY+P G+I +
Sbjct: 325 LRNVTFAYQDNGFS--VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382
Query: 512 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIE-WAAKQAYVHE 570
DG P+T R+ V + L ++ K +E W + H+
Sbjct: 383 DGKPVTAEQPEDYRKLFSAVFTDFHLFD-----QLLGPEGKPANPALVEKWLERLKMAHK 437
Query: 571 FILSLPCGYETLVDDDL----LSGGQKQRIAIARAILRDPAILLLDEATSALDSE--SEH 624
L D + LS GQK+R+A+ A+ + ILLLDE + D E
Sbjct: 438 L---------ELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREF 488
Query: 625 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 669
Y +L L+ K T+ I+H DR++ + +G++ E
Sbjct: 489 YQV-LLPLLQEMGK---TIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 9e-15
Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 34/194 (17%)
Query: 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG--FV 531
I EV+ I+G +G GK+TFV LL + +P +G DL + + + I +
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE-------EDLKVSYKPQYISPDYD 415
Query: 532 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI--LSLPCGYETLVDDDLLS 589
G LL+ I+S + E + L+L E VD+ LS
Sbjct: 416 GTVEDLLRSAIRSAFG----------------SSYFKTEIVKPLNLEDLLERPVDE--LS 457
Query: 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV-KGVLHALRNDCKTKRTVIVIAH 648
GG+ QR+AIA A+ R+ + LLDE ++ LD E V K + + N ++T +V+ H
Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIEN---NEKTALVVDH 514
Query: 649 RLSTIKAV-DRIVV 661
+ I V DR++V
Sbjct: 515 DIYMIDYVSDRLIV 528
|
Length = 591 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 77.3 bits (190), Expect = 9e-15
Identities = 109/564 (19%), Positives = 218/564 (38%), Gaps = 55/564 (9%)
Query: 131 KWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGL 190
I ++A + ++ I + + A+ EE + S LC+ + +F
Sbjct: 17 PAITAFSIALGLAGGLAIIALLASINNAI----HEENFLGQGSLFSFGGLCLLALLFRIG 72
Query: 191 RSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDIN 250
+ A + ++ LR L +L + D L LT D +++ +
Sbjct: 73 ADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FP 131
Query: 251 MILRNSLQGAGAFINLLTLSWP---LTLSALLICSFLSIIVSVYG-QYQKRASVLTQECN 306
I L LS P +T+SA++I + ++ + G ++ A N
Sbjct: 132 PIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFN 191
Query: 307 AHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRE-SMAYGLWNMSFITLY 365
H + +A + ++++G I + + I + + L FI
Sbjct: 192 EHTHAIAFG----AKELKIHGIRRLSFAHGAI---QESANNIADLHIIEILI---FIAAE 241
Query: 366 RSTQVMAVLLGGMSI----MIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGAT 421
Q++ LL G ++ M + ++ +VL ++ +V L L Q+ A
Sbjct: 242 NFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIAC 301
Query: 422 EKVFQL--------IDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPS-RPTVPI-LNHV 471
+++ +L S+ + + + ++ ++ + + + L +
Sbjct: 302 QRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPI 361
Query: 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 531
L I ++V IVG +G GKST L LY P +G+I +DG ++ R+ +
Sbjct: 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAI 421
Query: 532 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS-----LPCGYETLVDDD 586
+ L I P + ++ ++ A Q Y+ ++ G+ T
Sbjct: 422 FADFHLFDDLIG-------PDEGEHASLDNA--QQYLQRLEIADKVKIEDGGFSTTTA-- 470
Query: 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK-RTVIV 645
LS GQ++R+A+ A L D ILL DE + D + + L D K + +T+I+
Sbjct: 471 -LSTGQQKRLALICAWLEDRPILLFDEWAADQDPA---FKRFFYEELLPDLKRQGKTIII 526
Query: 646 IAHRLSTIKAVDRIVVIDDGRIIE 669
I+H + D+I+ + G I++
Sbjct: 527 ISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 1e-14
Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 41/233 (17%)
Query: 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPL--TDLDIRWLREK 527
I NE+ +G SG GKST + L R+ + +G ++ G + +D +R
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 528 IGFVGQEPQLLQMDIKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 583
IG V Q+P M I N+ +G K + ++ A + A + + V
Sbjct: 91 IGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWD-----------EV 139
Query: 584 DDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 637
D L LSGGQ+QR+ IARAI +P +LLLDE SALD + V+ ++ L+ D
Sbjct: 140 KDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKD- 198
Query: 638 KTKRTVIVIAH------RLSTIKAVDRIVVIDDGR---IIEVGNHAELLHKGR 681
T+ ++ H R++ A + + R ++E+G A++ R
Sbjct: 199 ---YTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNPR 248
|
Length = 261 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 76.9 bits (189), Expect = 2e-14
Identities = 70/293 (23%), Positives = 137/293 (46%), Gaps = 30/293 (10%)
Query: 410 NLSSLLQSIGATEKVFQLIDL--------------LPSNQFLSEGVKLQRLM---GHVQF 452
++ L++S+ +VF+ IDL S + E Q+ G +
Sbjct: 1164 DVDGLMRSV---SRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDV 1220
Query: 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512
++ Y +L + ++E + V ++G +GSGKST ++ LLRL ++G+I ID
Sbjct: 1221 QGLTAKYTEAGRA-VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQID 1278
Query: 513 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 572
G + ++ R+ G + Q+ + + N+ + +E+I A++ + I
Sbjct: 1279 GVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL--DPYEQWSDEEIWKVAEEVGLKSVI 1336
Query: 573 LSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 630
P + ++ D +LS G KQ + +AR+IL ILLLDE ++ LD + ++ L
Sbjct: 1337 EQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL 1396
Query: 631 HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLY 683
++C TVI+ HR+ + + +VI+ + + + +LL++ L+
Sbjct: 1397 KQSFSNC----TVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLF 1445
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 51/209 (24%), Positives = 111/209 (53%), Gaps = 17/209 (8%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
++++ + E+ ++G +G+GK+T ++L L EP++G+I +G PL+ + ++ +
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKNR 73
Query: 528 IGFVGQEPQLLQ-MDIKSNIMY-GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET-LVD 584
IG++ +E L M ++ + Y K + +I+ QA++ + G +T +
Sbjct: 74 IGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKL-QAWLERLEIV---GKKTKKIK 129
Query: 585 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644
+ LS G +Q+I A++ +P +L+LDE S LD + +K + L+ + T+I
Sbjct: 130 E--LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA---TII 184
Query: 645 VIAHRLSTI-KAVDRIVVIDDGRIIEVGN 672
+HR+ + + DR++++ G+ + G
Sbjct: 185 FSSHRMEHVEELCDRLLMLKKGQTVLYGT 213
|
Length = 300 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 38/233 (16%)
Query: 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--------- 519
N+V L + E+V+++G +G+GK+T N L Y+P+ G I + G + L
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81
Query: 520 ------DIRWLREKIG----FVGQEPQLLQMDIKSNIMYGCPK-----DVKNEDIEWAAK 564
+R RE V Q QL K+ + G K ++E ++ AA
Sbjct: 82 VVRTFQHVRLFREMTVIENLLVAQHQQL-----KTGLFSGLLKTPAFRRAESEALDRAA- 135
Query: 565 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624
E + L + L+ GQ++R+ IAR ++ P IL+LDE + L+ +
Sbjct: 136 --TWLERVGLLEHANRQAGN---LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETK 190
Query: 625 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 676
+ ++ LRN+ TV++I H + + + DRI V++ G + G E+
Sbjct: 191 ELDELIAELRNEHNV--TVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241
|
Length = 255 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 2e-14
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 29/217 (13%)
Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 532
L+ + E++ ++G +G+GK+T + +L L P+ G + + G IG+V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASP-----GKGWRHIGYVP 55
Query: 533 QEPQL---LQMDIKSNIMYGC---------PKDVKNEDIEWAAKQAYVHEFILSLPCGYE 580
Q + + + +M G P + A ++ + E + P G
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTE-LADRPVGE- 113
Query: 581 TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK 640
LSGGQ+QR+ +ARA+ P++LLLDE + LD ++ + + L
Sbjct: 114 -------LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA---G 163
Query: 641 RTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677
+++ H L+ A VV+ +GR+I G +L
Sbjct: 164 TAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 65/228 (28%), Positives = 103/228 (45%), Gaps = 45/228 (19%)
Query: 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI--------YIDGFPLTDLDIR 522
V + EV+ IVG SGSGK+T +N L P G++ D + L++ + R
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84
Query: 523 WL-REKIGFVGQEP-QLLQMDIKS--NI----M------YGCPKDVKNEDIEWAAKQAYV 568
L R + GFV Q P L+M + + NI M YG D++ +W +
Sbjct: 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYG---DIRATAGDWLERVEID 141
Query: 569 HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 628
I LP + SGG +QR+ IAR ++ P ++ +DE T LD + +
Sbjct: 142 AARIDDLPTTF---------SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLD 192
Query: 629 VLHALRNDCKTKRTVIVIAHRLSTIKAV-----DRIVVIDDGRIIEVG 671
+L L + V+++ H L AV R++V+ GR++E G
Sbjct: 193 LLRGLVRELGL--AVVIVTHDL----AVARLLAHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 3e-14
Identities = 62/198 (31%), Positives = 93/198 (46%), Gaps = 34/198 (17%)
Query: 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDLDIRW-- 523
V L I A +++A +G SG GKST + R+ + +G++ + D I
Sbjct: 39 VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVK 98
Query: 524 LREKIGFVGQEPQLLQMDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCG 578
LR ++G V Q P I NI + P K +E +E + ++A + E
Sbjct: 99 LRRQVGMVFQRPNPFPKSIYENIAFA-PRANGYKGNLDELVEDSLRRAAIWE-------- 149
Query: 579 YETLVDDDL------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 632
V D L LSGGQ+QR+ IARAI P +LL+DE SALD S V+ +
Sbjct: 150 ---EVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE 206
Query: 633 LRNDCKTKRTVIVIAHRL 650
L K + T+I++ H +
Sbjct: 207 L----KEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 3e-14
Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 37/226 (16%)
Query: 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI------- 521
V + EV+ IVG SGSGKST + L P G +L++
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 522 --RWLREKIGFVGQEPQL-LQMDIKS--NI----------MYGCPKDVKNEDIEWAAKQA 566
R +R + GFV Q P+ L+M + + NI YG +++ +W +
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYG---NIRATAQDWLEEVE 136
Query: 567 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
I LP + SGG +QR+ IAR ++ P ++ +DE T LD + +
Sbjct: 137 IDPTRIDDLPRAF---------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL 187
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
+L L D VI++ H L + + R++V+ GR++E G
Sbjct: 188 LDLLRGLVRDLGL--AVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 4e-14
Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 37/224 (16%)
Query: 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI--------- 521
V + EV+ IVG SGSGK+T + + P G + D+
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84
Query: 522 RWLREKIGFVGQEPQL-LQMDIKS--NI----------MYGCPKDVKNEDIEWAAKQAYV 568
R LR + GFV Q P+ L+M + + NI YG +++ E +W +
Sbjct: 85 RLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG---NIRAEAQDWLEEVEID 141
Query: 569 HEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 628
+ I LP + SGG +QR+ IAR ++ P ++ +DE T LD + +
Sbjct: 142 LDRIDDLPRTF---------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 192
Query: 629 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
+L L + V+++ H L+ + + DR++V+ G+++E G
Sbjct: 193 LLRGLVRELGL--AVVIVTHDLAVARLLADRLMVMKQGQVVESG 234
|
Length = 258 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 1e-13
Identities = 66/247 (26%), Positives = 126/247 (51%), Gaps = 26/247 (10%)
Query: 438 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 497
++G ++R++GH IS ILN V E++A++G SGSGKST +N
Sbjct: 56 NKGSNIKRILGHKP--KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNA 113
Query: 498 LL-RLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC---- 550
L R+ + G I + T ++ + GFV Q+ L + ++ +++ C
Sbjct: 114 LAGRIQGNNFTGTILANNRKPTKQILK----RTGFVTQDDILYPHLTVRETLVF-CSLLR 168
Query: 551 -PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLL---SGGQKQRIAIARAILRDP 606
PK + ++ A ++ + E L+ C T++ + + SGG+++R++IA +L +P
Sbjct: 169 LPKSLTKQEKILVA-ESVISELGLT-KCE-NTIIGNSFIRGISGGERKRVSIAHEMLINP 225
Query: 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDD 664
++L+LDE TS LD+ + + + L +L K T++ H+ S+ + D ++V+ +
Sbjct: 226 SLLILDEPTSGLDATAAYRLVLTLGSLAQKGK---TIVTSMHQPSSRVYQMFDSVLVLSE 282
Query: 665 GRIIEVG 671
GR + G
Sbjct: 283 GRCLFFG 289
|
Length = 659 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-13
Identities = 67/241 (27%), Positives = 118/241 (48%), Gaps = 35/241 (14%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
+ F N+ Y + V + + ++ E ++G +G+GK+T + +LL L P G I
Sbjct: 8 IDFRNVEKRYGDKLVV---DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD----IKSNIM-----YGCPKDVKNEDIE 560
+ G P+ R R+++G V PQ +D ++ N++ +G
Sbjct: 65 SLCGEPVPS-RARHARQRVGVV---PQFDNLDPDFTVRENLLVFGRYFGLSA-------- 112
Query: 561 WAAKQAYVH---EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 617
AA +A V EF L + V + LSGG K+R+ +ARA++ DP +L+LDE T+
Sbjct: 113 -AAARALVPPLLEFA-KLENKADAKVGE--LSGGMKRRLTLARALVNDPDVLVLDEPTTG 168
Query: 618 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 676
LD ++ H + LR+ +T+++ H + + + DR+ VI++GR I G L
Sbjct: 169 LDPQARHL---MWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225
Query: 677 L 677
+
Sbjct: 226 I 226
|
Length = 306 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 53/231 (22%), Positives = 107/231 (46%), Gaps = 36/231 (15%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
LN + +++ E+ ++G +G+GK+T ++++ P +G++ DG D D+ L E
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG----DTDLTKLPEH 76
Query: 528 ------IGFVGQEPQ-LLQMDIKSNIMYGC--PKDVKNEDIEWA--------AKQAYVHE 570
IG Q+P + ++ N+ K V +A ++ + E
Sbjct: 77 RIARAGIGRKFQKPTVFENLTVRENLELALNRDKSV------FASLFARLRAEERRRIDE 130
Query: 571 FILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 628
+L+ G D LLS GQKQ + I + +DP +LLLDE + +
Sbjct: 131 -LLAT-IGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAE 188
Query: 629 VLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 678
+L +L K +++V+ H + ++ + D++ V+ +G ++ G+ E+ +
Sbjct: 189 LLKSL----AGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235
|
Length = 249 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 2e-13
Identities = 64/237 (27%), Positives = 114/237 (48%), Gaps = 32/237 (13%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N++ Y R V V LT+ + E+V ++G +G+GK+T +++ + G I ID
Sbjct: 8 NLAKAYKGRRVV---EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIID- 63
Query: 514 FPLTDLDIRWL------REKIGFVGQEPQLLQ-MDIKSNIM--YGCPKDVKNEDIEWAAK 564
D DI L R IG++ QE + + + + N+M D+ E E A
Sbjct: 64 ----DEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRAN 119
Query: 565 QAYVHEFILSLPCGYETLVDDDL---LSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
+ + EF + + D + LSGG+++R+ IARA+ +P +LLDE + +D
Sbjct: 120 E-LMEEFHIEH-------LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 171
Query: 622 SEHYVKGVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELL 677
S +K ++ LR+ + V++ H + T+ +R ++ G +I G E+L
Sbjct: 172 SVIDIKRIIEHLRD---SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225
|
Length = 241 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 3e-13
Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 67/207 (32%)
Query: 483 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE--KIGFVGQEPQL-LQ 539
++GL+G+GKST + ++ + + +G+ K+G++ QEPQL
Sbjct: 36 VLGLNGAGKSTLLRIMAGVDKEFNGEA-------------RPAPGIKVGYLPQEPQLDPT 82
Query: 540 MDIKSNIMYGCPKDVK-------------NEDIEW---AAKQAYVHEFI----------- 572
++ N+ G + D + A+QA + E I
Sbjct: 83 KTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRK 142
Query: 573 -------LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES--- 622
L P + V LSGG+++R+A+ R +L P +LLLDE T+ LD+ES
Sbjct: 143 LEIAMDALRCPPW-DADVTK--LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAW 199
Query: 623 -EHYVKGVLHALRNDCKTKRTVIVIAH 648
E +++ + TV+ + H
Sbjct: 200 LEQHLQ----------EYPGTVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 3e-13
Identities = 70/254 (27%), Positives = 104/254 (40%), Gaps = 42/254 (16%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSD-------GQIYIDGFPLTD 518
IL + L IE V A++G +G+GKST + L L G + ++G PL
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 519 LDIRWLREKIGFVGQEPQ-LLQMDIKSNIMYGC--------PKDVKNEDIEWAAKQAYVH 569
+D L + Q Q + ++ G ++ +I W A
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQA------ 129
Query: 570 EFILSLPCGYETLVDDDL--LSGGQKQRIAIARAI---------LRDPAILLLDEATSAL 618
L+L G LV D+ LSGG+ R+ AR + + P LLLDE T+AL
Sbjct: 130 ---LAL-AGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAAL 185
Query: 619 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL- 677
D +H + + L D IV L+ A DRI ++ DG I+ G A++L
Sbjct: 186 DLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA-DRIAMLADGAIVAHGAPADVLT 244
Query: 678 --HKGRLYAKLVKR 689
H R Y V+
Sbjct: 245 PAHIARCYGFAVRL 258
|
Length = 272 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 4e-13
Identities = 58/212 (27%), Positives = 101/212 (47%), Gaps = 44/212 (20%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N+S + R +L+ V L ++ +++ ++G +G+GKST V ++L L P +G I
Sbjct: 9 NVSVSFGQRR---VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI---- 61
Query: 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIK-----SNIMYGCPKDVKNEDIEWAAKQ--- 565
R + +IG+V PQ L +D + + P K EDI A K+
Sbjct: 62 -------KRNGKLRIGYV---PQKLYLDTTLPLTVNRFLRLRP-GTKKEDILPALKRVQA 110
Query: 566 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 625
++ + + LSGG+ QR+ +ARA+L P +L+LDE T +D +
Sbjct: 111 GHLIDAPMQK------------LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVA 158
Query: 626 VKGVLHALRN--DCKTKRTVIVIAHRLSTIKA 655
+ ++ LR DC V++++H L + A
Sbjct: 159 LYDLIDQLRRELDC----AVLMVSHDLHLVMA 186
|
Length = 251 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 6e-13
Identities = 74/247 (29%), Positives = 108/247 (43%), Gaps = 57/247 (23%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS------DGQIYIDGFPLTDL 519
++N V L IEA E +A+VG SGSGKS +LRL PS G I G L
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL-PSPPVVYPSGDIRFHGESLLHA 81
Query: 520 DIRWLR----EKIGFVGQEP------------QLLQM---------DIKSNIMYGCPKDV 554
+ LR KI + QEP QL ++ + + C V
Sbjct: 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRV 141
Query: 555 KNEDIEWAAKQ--AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 612
I AAK+ Y H+ LSGG++QR+ IA A+L P +L+ D
Sbjct: 142 ---GIRQAAKRLTDYPHQ-----------------LSGGERQRVMIAMALLTRPELLIAD 181
Query: 613 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
E T+ALD + + +L L+ + ++ I H LS ++ + DR+ V+ +GR +E
Sbjct: 182 EPTTALDVSVQAQILQLLRELQQELNM--GLLFITHNLSIVRKLADRVAVMQNGRCVEQN 239
Query: 672 NHAELLH 678
A L
Sbjct: 240 RAATLFS 246
|
Length = 529 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 6e-13
Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 32/222 (14%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-------- 519
L+ V L I E+VA++G SGSGKST + L G I D + +
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHL-------SGLITGDKSAGSHIELLGRTVQ 72
Query: 520 -------DIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVK--NEDIEWAAKQAYVH 569
DIR R G++ Q+ L+ ++ + N++ G W ++
Sbjct: 73 REGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQR 132
Query: 570 EFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
G + LSGGQ+QR+AIARA+++ ++L DE ++LD ES V
Sbjct: 133 ALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM 192
Query: 628 GVLHAL-RNDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRI 667
L + +ND TV+V H++ ++ +RIV + G +
Sbjct: 193 DTLRDINQND---GITVVVTLHQVDYALRYCERIVALRQGHV 231
|
Length = 262 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 8e-13
Identities = 55/220 (25%), Positives = 100/220 (45%), Gaps = 27/220 (12%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLRE 526
LN + L ++ E+ I+G +G+GK+T ++++ P +G + G LT L + R
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 527 KIGFVGQEPQ-LLQMDIKSNIMYGCPKD----------VKNEDIEWAAKQAYVHEFILSL 575
IG Q+P + + N+ P+D + E+ + + E I
Sbjct: 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVL---ETI--- 131
Query: 576 PCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 633
G D LLS GQKQ + I +++DP +LLLDE + + E +L +L
Sbjct: 132 --GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL 189
Query: 634 RNDCKTKRTVIVIAHRLSTIKAVDRIV-VIDDGRIIEVGN 672
K +V+V+ H + ++++ V V+ G ++ G+
Sbjct: 190 ----AGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 9e-13
Identities = 60/229 (26%), Positives = 107/229 (46%), Gaps = 20/229 (8%)
Query: 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
+ F +S HY + L+ V L I E+V ++G +G+GK+T + L +
Sbjct: 2 EKVMLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT 58
Query: 506 DGQIYIDGFPLTDLDI-RWLREKIGFVGQEPQLL-QMDIKSNIMYG---CPKDVKNEDIE 560
G+I DG +TD + +RE + V + ++ +M ++ N+ G +D E I+
Sbjct: 59 SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK 118
Query: 561 WAAKQAYVHEFILSLPCGYETLVD-DDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619
W V+E P +E + +SGG++Q +AI RA++ P +LLLDE + L
Sbjct: 119 W------VYEL---FPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLA 169
Query: 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 668
+ + LR T +V + +K DR V+++G ++
Sbjct: 170 PIIIQQIFDTIEQLREQGMT--IFLVEQNANQALKLADRGYVLENGHVV 216
|
Length = 237 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 2e-12
Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 47/227 (20%)
Query: 454 NISFHYP-SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLL---LRLYEPSDGQI 509
NISF R +PIL ++ E+V ++G GSG ST + L +G I
Sbjct: 8 NISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI 67
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQE----PQLLQMDIKSNIMYGCPKDVKNEDIEWAAK- 564
+ +G P + ++ E I +V +E P L V+ E +++A +
Sbjct: 68 HYNGIPYKEFAEKYPGEII-YVSEEDVHFPTLT---------------VR-ETLDFALRC 110
Query: 565 QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE- 623
+ +EF+ + SGG+++R++IA A++ ++L D +T LDS +
Sbjct: 111 KG--NEFVRGI-------------SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTAL 155
Query: 624 HYVKGVLHALRNDCKTKRTVIVIAHRLS--TIKAVDRIVVIDDGRII 668
+K + K T V ++ S D+++V+ +GR I
Sbjct: 156 EILKCIRTMAD---VLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 2e-12
Identities = 69/233 (29%), Positives = 106/233 (45%), Gaps = 34/233 (14%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKST-FVNL--LLRLYEPSDGQIYIDGFPL--TDLD 520
P+L + L + V +VG +G GKST F+NL LLR P G + G PL +
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRG 71
Query: 521 IRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 578
+ LR+++ V Q+P Q+ DI S+I + ++N + A V E +
Sbjct: 72 LLALRQQVATVFQDPEQQIFYTDIDSDIAF----SLRNLGVPEAEITRRVDEAL------ 121
Query: 579 YETLVDDD--------LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 630
TLVD LS GQK+R+AIA A++ LLLDE T+ LD + +
Sbjct: 122 --TLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAI- 178
Query: 631 HALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRL 682
+R VI+ +H + I + D + V+ G+I+ G E+
Sbjct: 179 --IRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACTEA 229
|
Length = 271 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-12
Identities = 64/214 (29%), Positives = 109/214 (50%), Gaps = 12/214 (5%)
Query: 461 SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520
+ P V L+ L + V+A+VG +G+GKST + +L +Y G I G +T
Sbjct: 13 AFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG 72
Query: 521 IRWLREK-IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI--LSLP 576
+ +E IG + QE L+ Q+ I NI G + I+W A + + L+L
Sbjct: 73 PKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR 132
Query: 577 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL-DSESEHYVKGVLHALRN 635
+ LV + LS G++Q + IA+ + + ++++DE T AL D+E+E + V+ L++
Sbjct: 133 FSSDKLVGE--LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR-VIRELKS 189
Query: 636 DCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 668
R ++ I+HRL I + D + V DG+ I
Sbjct: 190 Q---GRGIVYISHRLKEIFEICDDVTVFRDGQFI 220
|
Length = 501 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 3e-12
Identities = 53/234 (22%), Positives = 108/234 (46%), Gaps = 34/234 (14%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYID 512
N++ P ++ V ++ E++ + GL G+G++ V L Y +G ++I+
Sbjct: 262 NLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFIN 321
Query: 513 GFPLTDLDIR----WLREKIGFVGQEPQ----LLQMDIKSNIMYG-----CPKDVKNEDI 559
G P+ DIR +R I V ++ + + + + NI C K +
Sbjct: 322 GKPV---DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAA 378
Query: 560 EWAA-----KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 614
E ++ V LP G LSGG +Q+ +A+ +L +P +L+LDE
Sbjct: 379 ELQIIGSAIQRLKVKTASPFLPIGR--------LSGGNQQKAVLAKMLLTNPRVLILDEP 430
Query: 615 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 667
T +D +++ + +++ L + +IV++ L+ + + DR++VI +G++
Sbjct: 431 TRGVDVGAKYEIYKLINQL---AQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-12
Identities = 67/239 (28%), Positives = 106/239 (44%), Gaps = 45/239 (18%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIRW 523
IL V LT++ E+ AI+G +GSGKST + YE + G I G L +L+
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD- 72
Query: 524 LREKIG-FVG-QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA---YVHEFILSLPCG 578
R + G F+ Q P+ +I V N + +A A E L L
Sbjct: 73 ERARAGLFLAFQYPE----EIPG---------VSNLEFLRSALNARRSARGEEPLDLL-D 118
Query: 579 YETLV---------DDDLL--------SGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
+ L+ D++ L SGG+K+R I + L +P + +LDE S LD +
Sbjct: 119 FLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDID 178
Query: 622 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV--DRIVVIDDGRIIEVGNHAELLH 678
+ V ++ LR R+ ++I H + + D + V+ DGRI++ G+ EL
Sbjct: 179 ALKIVAEGINRLREP---DRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD-VELAK 233
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 3e-12
Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 75/211 (35%)
Query: 483 IVGLSGSGKSTFVNLLLR----LYEPSDGQIYI-DGFPLTDLDIRWLREKIGFVGQEPQL 537
++GL+G+GKST LLR + + +G+ G K+G++ QEPQL
Sbjct: 38 VLGLNGAGKST----LLRIMAGVDKEFEGEARPAPGI------------KVGYLPQEPQL 81
Query: 538 -LQMDIKSNIMYGCPKDVKN-----EDI------------EWAAKQAYVHEFI------- 572
+ ++ N+ G +VK +I AA+Q + E I
Sbjct: 82 DPEKTVRENVEEGV-AEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWD 140
Query: 573 -----------LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
L P + V LSGG+++R+A+ R +L P +LLLDE T+ LD+E
Sbjct: 141 LDSQLEIAMDALRCPPW-DAKVTK--LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE 197
Query: 622 S----EHYVKGVLHALRNDCKTKRTVIVIAH 648
S E + LH TV+ + H
Sbjct: 198 SVAWLEQF----LH------DYPGTVVAVTH 218
|
Length = 556 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 7e-12
Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 40/199 (20%)
Query: 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 533
I EV+ IVG +G GK+TF LL + +P +G++ +L I +
Sbjct: 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV------DPELKISY---------- 404
Query: 534 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA-----YVHEFI--LSLPCGYETLVDDD 586
+PQ ++ D D ED+ + Y E I L L + V D
Sbjct: 405 KPQYIKPD----------YDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKD- 453
Query: 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-TVIV 645
LSGG+ QR+AIA + RD + LLDE ++ LD E + V A+R + + T +V
Sbjct: 454 -LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE-QRLA--VAKAIRRIAEEREATALV 509
Query: 646 IAHRLSTIKAV-DRIVVID 663
+ H + I + DR++V +
Sbjct: 510 VDHDIYMIDYISDRLMVFE 528
|
Length = 590 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 8e-12
Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 12/158 (7%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526
+ + + T+ A E + + G +GSGK+T + +L L P G++ ++G PL R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 527 KIGFVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 585
+ ++G P + + + N+ + D +E +E A + ++ F P
Sbjct: 75 -LLYLGHAPGIKTTLSVLENLRFWHA-DHSDEQVEEALARVGLNGF-EDRPVAQ------ 125
Query: 586 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
LS GQ++R+A+AR +L + +LDE T+ALD
Sbjct: 126 --LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGV 161
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 8e-12
Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 45/242 (18%)
Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDI 521
IL + L+I E+ AI+G +GSGKST ++ Y+ +G I G + DL+
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 522 RWLREKIG-FVG-QEPQLLQMDIKSNIMYGCPKDVKNED---IEWAAKQAYVHEFILSLP 576
R +G F+ Q P ++I V N D + + +K+ + L P
Sbjct: 79 E-ERAHLGIFLAFQYP----IEIPG---------VSNADFLRLAYNSKRKFQGLPELD-P 123
Query: 577 CGYETLVDDDL-----------------LSGGQKQRIAIARAILRDPAILLLDEATSALD 619
+ ++++ L SGG+K+R I + L D + +LDE S LD
Sbjct: 124 LEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLD 183
Query: 620 SESEHYVKGVLHALRNDCKTKRTVIVIAH--RLSTIKAVDRIVVIDDGRIIEVGNHAELL 677
++ + ++ L ++I+I H RL D + V+ +G+II+ G+ AEL
Sbjct: 184 IDALKIIAEGINKLMTSEN---SIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD-AELA 239
Query: 678 HK 679
+
Sbjct: 240 KE 241
|
Length = 252 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 34/224 (15%)
Query: 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-REK 527
+ + A E++ +VG +G+GKST LL R+ P G I G PL L R +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKST---LLARMAGLLPGSGSIQFAGQPLEAWSAAELARHR 71
Query: 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL 587
Q+ M + + P + E + A ++E +L +DD L
Sbjct: 72 AYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASA-----LNEVAEAL------GLDDKL 120
Query: 588 ------LSGGQKQRIAIARAILR-DPAI------LLLDEATSALDSESEHYVKGVLHALR 634
LSGG+ QR+ +A +L+ P I LLLDE ++LD + + +L L
Sbjct: 121 GRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSEL- 179
Query: 635 NDCKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 677
C+ V++ +H L+ T++ DR+ ++ G+++ G E+L
Sbjct: 180 --CQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 3e-11
Identities = 57/229 (24%), Positives = 111/229 (48%), Gaps = 24/229 (10%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYID 512
N++ P P + ++ V ++ E++ I GL G+G++ V L Y +G+I+ID
Sbjct: 264 NLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFID 323
Query: 513 GFPLTDLDIR----WLREKIGFVGQEPQ----LLQMDIKSNIMYGCPKDVKNED-IEWAA 563
G P+ IR + + I V ++ + + M + NI I+ AA
Sbjct: 324 GKPV---KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA 380
Query: 564 KQAYVHEFILSLPCGYETLVDDDL----LSGGQKQRIAIARAILRDPAILLLDEATSALD 619
+ + E I L + +L LSGG +Q+ +A+ +L +P IL+LDE T +D
Sbjct: 381 ELKTILESIQRLKVKTASP---ELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437
Query: 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 667
+++ + +++ L + +IVI+ L + + DR++V+ +G++
Sbjct: 438 VGAKYEIYKLINQL---VQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 3e-11
Identities = 52/212 (24%), Positives = 84/212 (39%), Gaps = 54/212 (25%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
L ++ ++I N +V + G+SGSGKST VN L S I P R K
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL---YASGKARLISFLPKFS------RNK 61
Query: 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL 587
+ F+ Q LQ I + Y L G +
Sbjct: 62 LIFIDQ----LQFLIDVGLGY--------------------------LTLGQKL----ST 87
Query: 588 LSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 645
LSGG+ QR+ +A + +P + +LDE ++ L + + + V+ L + TVI+
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID---LGNTVIL 144
Query: 646 IAHRLSTIKAVDRIVVI------DDGRIIEVG 671
I H L + + D I+ G+++ G
Sbjct: 145 IEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 3e-11
Identities = 54/241 (22%), Positives = 102/241 (42%), Gaps = 49/241 (20%)
Query: 463 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTD 518
P+++ V LT++ V+A+VG SGSGKS L + + G++ +DG P+
Sbjct: 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP 73
Query: 519 LDIRWLREKIGFVGQEPQ----------------LLQMDIKSN--IMYGCPKDVKNEDIE 560
+R KI + Q P+ L + ++ + + V E+
Sbjct: 74 CALR--GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA 131
Query: 561 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
+ Y E +SGG QR+ IA A+L + ++ DE T+ LD
Sbjct: 132 -RVLKLYPFE-----------------MSGGMLQRMMIALALLCEAPFIIADEPTTDLDV 173
Query: 621 ESEHYVKGVLHALRNDCKTKRT--VIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELL 677
++ + +L ++ R ++++ H + + + D + V+ GRI+E G+ L
Sbjct: 174 VAQARILDLLESIVQK----RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229
Query: 678 H 678
+
Sbjct: 230 N 230
|
Length = 254 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 4e-11
Identities = 45/199 (22%), Positives = 65/199 (32%), Gaps = 62/199 (31%)
Query: 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGFPLTDLDIRWLREKIGFVGQEPQ 536
EV+ IVG GSGK+T L R P G IYIDG + + + L I +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS- 60
Query: 537 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596
SG + R+
Sbjct: 61 ---------------------------------------------------GSGELRLRL 69
Query: 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHA---LRNDCKTKRTVIVIAHRLSTI 653
A+A A P +L+LDE TS LD+E E + + L + TVI+ + +
Sbjct: 70 ALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
Query: 654 K------AVDRIVVIDDGR 666
DR +V+
Sbjct: 130 GPALLRRRFDRRIVLLLIL 148
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 5e-11
Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 35/220 (15%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
L T+ + A+VG++GSGKST L+ + G+I I G P + L++
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QALQKN 78
Query: 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDD 586
+ V PQ ++D + P V ED+ + Y H L + +V
Sbjct: 79 L--VAYVPQSEEVD------WSFP--VLVEDVVMMGR--YGHMGWLRRAKKRDRQIVTAA 126
Query: 587 L---------------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 631
L LSGGQK+R+ +ARAI + ++LLDE + +D ++E + +L
Sbjct: 127 LARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLR 186
Query: 632 ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 671
LR++ +T++V H L ++ V+ G ++ G
Sbjct: 187 ELRDE---GKTMLVSTHNLGSVTEFCDYTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 5e-11
Identities = 55/214 (25%), Positives = 105/214 (49%), Gaps = 16/214 (7%)
Query: 457 FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516
F RP V LN +T N++ A +G +G+GK+T +++L L P+ G + + G +
Sbjct: 938 FEPSGRPAVDRLN---ITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI 994
Query: 517 -TDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 574
T+LD +R+ +G Q L + + +I++ ++ W Q + +
Sbjct: 995 ETNLDA--VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRS----WEEAQLEMEAMLED 1048
Query: 575 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 634
++ + LSGG ++++++A A + D +++LDE TS +D S + +L R
Sbjct: 1049 TGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR 1108
Query: 635 NDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 667
+ RT+I+ H + + DRI +I GR+
Sbjct: 1109 ----SGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 6e-11
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 11/103 (10%)
Query: 588 LSGGQKQRIAIARAILR------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
LSGG++QR+ +AR + + P LLLDE TSALD +H VL R +
Sbjct: 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH---HVLRLARQLAHERG 191
Query: 642 -TVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELLHKGRL 682
VIV+ H L+ + DRIV++ GR++ G AE+L L
Sbjct: 192 LAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPETL 234
|
Length = 258 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 2e-10
Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 58/237 (24%)
Query: 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530
+ ++ A E+V + GL G+G+S + LL + GQ+Y+DG P+ DIR R+ I
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPI---DIRSPRDAI-- 326
Query: 531 VGQEPQLLQMDIKSNIMYGCPKDVKNEDI---------------------------EWAA 563
++ IM CP+D K E I W A
Sbjct: 327 ------------RAGIML-CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEA 373
Query: 564 KQAYVHEFILSL----PCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619
+ A FI SL P + ++ LSGG +Q+ + R + D ++LLDE T +D
Sbjct: 374 ENA--DRFIRSLNIKTPSREQLIM---NLSGGNQQKAILGRWLSEDMKVILLDEPTRGID 428
Query: 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAE 675
++H + V++ L V+ ++ L + V DRIVV+ +GRI +
Sbjct: 429 VGAKHEIYNVIYEL---AAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482
|
Length = 501 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 2e-10
Identities = 54/205 (26%), Positives = 84/205 (40%), Gaps = 46/205 (22%)
Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 532
+ I AI+G +G GKST + L RL P+ G +++DG + + + +IG +
Sbjct: 28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLA 87
Query: 533 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS--------------LPCG 578
Q P D+ + E A+ Y H+ + + G
Sbjct: 88 QNAT-------------TPGDITVQ--ELVARGRYPHQPLFTRWRKEDEEAVTKAMQATG 132
Query: 579 YETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALD---------------SE 621
L D D LSGGQ+QR IA + ++ AI+LLDE T+ LD E
Sbjct: 133 ITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE 192
Query: 622 SEHYVKGVLHALRNDCKTKRTVIVI 646
+ + VLH L C+ +I +
Sbjct: 193 KGYTLAAVLHDLNQACRYASHLIAL 217
|
Length = 265 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-10
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 48/177 (27%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525
+ + + T+ A E + + G +GSGK+T + L+ L P+ G I +DG + D D +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD---VA 72
Query: 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKD-VKN-----EDIE-WAA----KQAYVHEF--- 571
E ++G ++ +K E++E WAA ++ +
Sbjct: 73 EACHYLG------------------HRNAMKPALTVAENLEFWAAFLGGEELDIAAALEA 114
Query: 572 -----ILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
+ LP GY LS GQK+R+A+AR ++ + I +LDE T+ALD+ +
Sbjct: 115 VGLAPLAHLPFGY--------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAV 163
|
Length = 207 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 2e-10
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 28/200 (14%)
Query: 457 FHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516
+HY LN++ + E+V I+GL+GSGKST NL+ + P+ G + I G
Sbjct: 36 YHYA-------LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG--- 85
Query: 517 TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLP 576
+ G GQ + +++K +M G K+ E I + A + +FI
Sbjct: 86 ---SAALIAISSGLNGQLTGIENIELKG-LMMGLTKEKIKEIIPEIIEFADIGKFIYQPV 141
Query: 577 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 636
Y S G K R+ A ++ +P IL++DEA S D + + K L + N+
Sbjct: 142 KTY---------SSGMKSRLGFAISVHINPDILVIDEALSVGD---QTFTKKCLDKM-NE 188
Query: 637 CKTK-RTVIVIAHRLSTIKA 655
K + +T+ I+H LS +K+
Sbjct: 189 FKEQGKTIFFISHSLSQVKS 208
|
Length = 549 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-10
Identities = 43/190 (22%), Positives = 70/190 (36%), Gaps = 66/190 (34%)
Query: 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 534
++ EV+ IVG +G+GK+T V +L P+ + W + +
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD------------NDEWDGITPVY---K 66
Query: 535 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594
PQ + LSGG+ Q
Sbjct: 67 PQYID------------------------------------------------LSGGELQ 78
Query: 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 654
R+AIA A+LR+ L DE ++ LD E + L + K+T +V+ H L+ +
Sbjct: 79 RVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE--EGKKTALVVEHDLAVLD 136
Query: 655 AV-DRIVVID 663
+ DRI V +
Sbjct: 137 YLSDRIHVFE 146
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-10
Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 12/164 (7%)
Query: 461 SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520
SR + + T+ A E + + G +G GK+T + +L L P G++ +G L +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 521 IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIE-WAAKQAYVHEFILSLPCG 578
R I ++G P L + N+ + A A LP
Sbjct: 69 DEPHRN-ILYLGHLPGLKPELSALENLHFWAA-IHGGAQRTIEDALAAVGLTGFEDLPAA 126
Query: 579 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622
LS GQ++R+A+AR L + +LDE T+ALD
Sbjct: 127 Q--------LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAG 162
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 3e-10
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 14/171 (8%)
Query: 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512
+ + F Y +P +L + + A ++ + G +G+GK+T + L+ L P G+I +
Sbjct: 5 IELDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFE 61
Query: 513 GFPLTDLDIRWLREKIGFVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 571
+ D+ ++++ FVG + + ++ N +Y I + + E
Sbjct: 62 RQSI-KKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCR-LFSLEH 119
Query: 572 ILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622
++ PCG LLS GQK+++A+ R + + LLDE ALD S
Sbjct: 120 LIDYPCG--------LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELS 162
|
Length = 200 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 4e-10
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 9/81 (11%)
Query: 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT-KRTVIVI 646
LSGG+K R+A+A+ +L +P +LLLDE T+ LD ES + AL K TVI++
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES-------IEALEEALKEYPGTVILV 123
Query: 647 AHRLSTIKAV-DRIVVIDDGR 666
+H + V +I+ ++DG+
Sbjct: 124 SHDRYFLDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 6e-10
Identities = 60/203 (29%), Positives = 94/203 (46%), Gaps = 27/203 (13%)
Query: 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 533
T +VV I+G +G GKST + +L +P+ G+ + P D I+ R G
Sbjct: 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFR------GT 147
Query: 534 EPQ-----LLQMDIK--SNIMY--GCPKDVK---NEDIEWAAKQAYVHEFILSLPCGYET 581
E Q L + +++ Y PK VK E ++ ++ E + L G E
Sbjct: 148 ELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERL--GLEN 205
Query: 582 LVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 639
++D D+ LSGG+ QR+AIA A+LRD + DE +S LD V+ L +
Sbjct: 206 VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIREL---AED 262
Query: 640 KRTVIVIAHRLSTIKAVDRIVVI 662
+ VIV+ H L+ + + V I
Sbjct: 263 GKYVIVVEHDLAVLDYLSDFVHI 285
|
Length = 591 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 7e-10
Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 27/229 (11%)
Query: 463 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYE---PSDGQIYIDGFPLTD 518
T IL + I+ E+ ++G GSG ST + + +G I DG +
Sbjct: 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEE 131
Query: 519 LDIRWLREKIGFVGQE----PQL-----LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 569
+ + R + + + P L L + P V E E+A A V+
Sbjct: 132 I-KKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSRE--EYAKHIADVY 188
Query: 570 EFILSLPCGYETLVDDDLL---SGGQKQRIAIARAILRDPAILLLDEATSALDSESE-HY 625
L T V +D + SGG+++R++IA A L I D AT LDS + +
Sbjct: 189 MATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEF 248
Query: 626 VKGVLHALRNDCK-TKRTVIVIAHRLS--TIKAVDRIVVIDDGRIIEVG 671
++ AL+ T +V ++ S + D+++V+ +G I G
Sbjct: 249 IR----ALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 8e-10
Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 49/232 (21%)
Query: 461 SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520
S P V L++V L + + + A++G +G+GKST + L +Y+ G I G +
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 521 IR-WLREKIGFVGQE-PQLLQMDIKSNI----------------MYGCPKDVKNE---DI 559
+ L I V QE +LQ + N+ MY K + +E DI
Sbjct: 67 SKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI 126
Query: 560 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL- 618
+ AK A LS Q Q I IA+A + I+++DE TS+L
Sbjct: 127 DPRAKVAT--------------------LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLT 166
Query: 619 DSESEHYVKGVLHALRND-CKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 668
+ E H ++ L+ C ++ I+H++ I + D I ++ DG+ I
Sbjct: 167 EKEVNHLFT-IIRKLKERGC----GIVYISHKMEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 8e-10
Identities = 64/241 (26%), Positives = 105/241 (43%), Gaps = 57/241 (23%)
Query: 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDI 521
V +N + ++ A E + IVG SGSGKS L+ L + G +G + +L
Sbjct: 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88
Query: 522 RWLR----EKIGFVGQEPQLL---QMDIKSNIMYGCPKDV--------KNEDIEWAAK-- 564
+ L E+I + Q+P M + +M +V K E E + +
Sbjct: 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLM-----EVLMLHKGMSKAEAFEESVRML 143
Query: 565 ------------QAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 612
+ Y HEF SGG +QR+ IA A+L P +L+ D
Sbjct: 144 DAVKMPEARKRMKMYPHEF-----------------SGGMRQRVMIAMALLCRPKLLIAD 186
Query: 613 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
E T+ALD + + +L+ L+ + T +I+I H L + + D+++V+ GR +E G
Sbjct: 187 EPTTALDVTVQAQIMTLLNELKREFNT--AIIMITHDLGVVAGICDKVLVMYAGRTMEYG 244
Query: 672 N 672
N
Sbjct: 245 N 245
|
Length = 330 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-09
Identities = 52/164 (31%), Positives = 77/164 (46%), Gaps = 15/164 (9%)
Query: 461 SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520
SR P+ + ++A E + + G +G+GK+T + +L L GQI IDG T D
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 521 IRWLREK-IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 578
R + + ++G P L + N+ + C + AKQ + G
Sbjct: 80 ----RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRR------AKQMPGSALAIVGLAG 129
Query: 579 YE-TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
YE TLV LS GQK+R+A+AR L + LLDE + LD E
Sbjct: 130 YEDTLVRQ--LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171
|
Length = 214 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 31/245 (12%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIR- 522
IL + L + EV AI+G +GSGKST L YE + G + G L +L
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74
Query: 523 WLREKIGFVGQEPQ---------LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI- 572
E I Q P LQ + + Y + + D Q + E I
Sbjct: 75 RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF-----QDLMEEKIA 129
Query: 573 -LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLH 631
L +P T + SGG+K+R I + + +P + +LDE+ S LD ++ V ++
Sbjct: 130 LLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVN 189
Query: 632 ALRNDCKTKRTVIVIAHR---LSTIKAVDRIVVIDDGRIIEVGNHA---ELLHKGRLYAK 685
+LR+ KR+ I++ H L IK D + V+ GRI++ G+ +L +G Y
Sbjct: 190 SLRDG---KRSFIIVTHYQRILDYIKP-DYVHVLYQGRIVKSGDFTLVKQLEEQG--YGW 243
Query: 686 LVKRQ 690
L ++Q
Sbjct: 244 LTEQQ 248
|
Length = 248 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 2e-09
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 25/181 (13%)
Query: 481 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM 540
+ I G +G GKS+ +L L+ G++ + K+ +V Q P +
Sbjct: 481 LLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLG 529
Query: 541 DIKSNIMY-GCPKDVKNEDIEWAAKQAY---VH-EFILSLPCGYETLVD-DDLLSGGQKQ 594
++ I+Y +D+K + + V IL G+ + D D+LSGG+KQ
Sbjct: 530 TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQ 589
Query: 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-TVIVIAHRLSTI 653
RIA+AR P +LDE TSA+ + E Y + C+ T+ ++HR S
Sbjct: 590 RIAMARLFYHKPQFAILDECTSAVSVDVEGY-------MYRLCREFGITLFSVSHRKSLW 642
Query: 654 K 654
K
Sbjct: 643 K 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 4e-09
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N+S R +L+ V LT+ EVVAI+G +G+GKST + L P G++ ++G
Sbjct: 7 NLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNG 63
Query: 514 FPLTDL 519
PL D
Sbjct: 64 RPLADW 69
|
Length = 258 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 4e-09
Identities = 58/223 (26%), Positives = 108/223 (48%), Gaps = 34/223 (15%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
+ F + SF YP P + ++ I+ + +A+VG +G GKST + L+ +PS G +
Sbjct: 509 ISFSDASFGYPGGPL--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN---IMYGCPKDVKNEDIEWAAKQA 566
+ R + ++ Q + +D+ SN M C V + + +A
Sbjct: 567 F-----------RSAKVRMAVFSQH-HVDGLDLSSNPLLYMMRCFPGVPEQKL-----RA 609
Query: 567 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES-EHY 625
++ F ++ G L LSGGQK R+A A+ + P ILLLDE ++ LD ++ E
Sbjct: 610 HLGSFGVT---GNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEAL 666
Query: 626 VKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRI 667
++G++ + V++++H I +VD + V+ +G++
Sbjct: 667 IQGLV-------LFQGGVLMVSHDEHLISGSVDELWVVSEGKV 702
|
Length = 718 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 9e-09
Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 48/223 (21%)
Query: 450 VQFVNISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-- 506
+ + N+++ P +LN++ ++ + A++G SG+GK+T +++L
Sbjct: 4 LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT 63
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 566
G+I I+G PL + G+V Q D+ S P E + ++A
Sbjct: 64 GEILINGRPLDKN----FQRSTGYVEQ------QDVHS------PNLTVREALRFSAL-- 105
Query: 567 YVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624
L LS Q++R+ I + P+IL LDE TS LDS++ +
Sbjct: 106 --------------------LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAY 145
Query: 625 YVKGVLHALRNDCKTKRTVIVIAHRLS--TIKAVDRIVVIDDG 665
++ L+ + + ++ H+ S + DR++++ G
Sbjct: 146 ---NIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 1e-08
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ N+S Y + +L + LTI + + +VG +G+GKST + L+ EP +G +
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 647
LSGG QR+ IA AI P +L+ DE T+ALD + + +L L+ K +++I
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQ--KENMALVLIT 211
Query: 648 HRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKGR 681
H L+ + +A +I+V+ G+++E G ++ R
Sbjct: 212 HDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPR 246
|
Length = 326 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 48/221 (21%), Positives = 104/221 (47%), Gaps = 29/221 (13%)
Query: 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLDIRWLR 525
+ ++ E++ GL GSG++ +N L + + + G+I ++G P + LD ++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDA--VK 337
Query: 526 EKIGFVGQEPQ----LLQMDIKSNIM---------YGCPKDVKNEDIEWAAKQAYVHEFI 572
+ + ++ + + I N+ Y + +E E + A +
Sbjct: 338 KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE--QRTAENQREL 395
Query: 573 LSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL 630
L+L C V+ ++ LSGG +Q++ I++ + P +++ DE T +D ++ + V+
Sbjct: 396 LALKC---HSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVM 452
Query: 631 HALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEV 670
L +D K +++++ L I V DRI V +GR+ ++
Sbjct: 453 RQLADDGK---VILMVSSELPEIITVCDRIAVFCEGRLTQI 490
|
Length = 510 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 4e-08
Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 38/222 (17%)
Query: 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-REKIG 529
+ A E++ +VG +G+GKST LL R+ G I G PL L R +
Sbjct: 20 GEVRAGEILHLVGPNGAGKST---LLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL-- 587
Q+ M + + P + E + A L+L DD L
Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAG-------ALAL--------DDKLGR 121
Query: 588 ----LSGGQKQRIAIARAILR-------DPAILLLDEATSALDSESEHYVKGVLHALRND 636
LSGG+ QR+ +A +L+ +LLLDE ++LD + + +L AL
Sbjct: 122 STNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL--- 178
Query: 637 CKTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 677
C+ +++ +H L+ T++ R ++ G+++ G E+L
Sbjct: 179 CQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 4e-08
Identities = 50/230 (21%), Positives = 106/230 (46%), Gaps = 26/230 (11%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
L+ + L +V+ +VG++GSGKST N++ P+ G++ +G ++ +
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG------EVSVIAIS 93
Query: 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKN---EDIEWAAKQAYVHEFILSLPCGYETLVD 584
G GQ + ++ K M K++K + IE++ + EFI Y
Sbjct: 94 AGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSE----LGEFIYQPVKKY----- 144
Query: 585 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644
S G + ++ + I +P IL++DEA S D + + + L + + +T+
Sbjct: 145 ----SSGMRAKLGFSINITVNPDILVIDEALSVGD---QTFAQKCLDKIYEFKEQNKTIF 197
Query: 645 VIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTES 693
++H L ++ +I I+ G++ + G ++L K + K+++++
Sbjct: 198 FVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKKKSKA 247
|
Length = 264 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 25/186 (13%)
Query: 479 EVVAIVGLSGSGKSTFVNLLL--------RLYEPSDGQIYIDGFPLTDLDIRW--LREKI 528
+V+ +VG +G GKST + +L + +P D +D F ++L + L E
Sbjct: 27 QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGD 86
Query: 529 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF-ILSLPCGYETLVDDDL 587
V +PQ + + PK VK + E K+ + L ++D ++
Sbjct: 87 VKVIVKPQYVDL---------IPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNI 137
Query: 588 --LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 645
LSGG+ QR+AIA A+ RD DE +S LD + ++ L D V+V
Sbjct: 138 DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED---DNYVLV 194
Query: 646 IAHRLS 651
+ H L+
Sbjct: 195 VEHDLA 200
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 4e-08
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 39/178 (21%)
Query: 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529
+ T+ A E+V I G +G+GK++ + +L L P G++ G P+ + ++ +
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL- 77
Query: 530 FVGQEPQLLQMDIKS------NIMYGCP-KDVKNEDIEWAAKQA-----YVHEFILSLPC 577
++G +P IK+ N+ + +++ W A + +P
Sbjct: 78 YLGHQP-----GIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----VPV 127
Query: 578 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV--LHAL 633
LS GQ++R+A+AR L + +LDE +A+D +GV L AL
Sbjct: 128 RQ--------LSAGQQRRVALARLWLTRAPLWILDEPFTAID------KQGVARLEAL 171
|
Length = 204 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 7e-08
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 647
LSGG +QR+ IA A+ PA+L+ DE T+ALD + + ++ L+ + VI I
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMG--VIFIT 226
Query: 648 HRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 678
H + + + DR++V+ G +E G+ ++ H
Sbjct: 227 HDMGVVAEIADRVLVMYQGEAVETGSVEQIFH 258
|
Length = 623 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 7e-08
Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 31/215 (14%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--------LYEPSDGQIYIDGFPLT 517
+L ++ L I+ +VVA+VG SG+GK+T + ++L Y P G++ +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEV-----P 451
Query: 518 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPC 577
+ L EP+ ++ I ++ D+ A ++ LS
Sbjct: 452 KNTVSALIPGE----YEPEFGEVTILEHL-RSKTGDLN-------AAVEILNRAGLSDAV 499
Query: 578 GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 637
Y + LS GQK+R +A+ + P +LL+DE + LD + V + L
Sbjct: 500 LYRRKFSE--LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR-- 555
Query: 638 KTKRTVIVIAHRLSTIKAV--DRIVVIDDGRIIEV 670
+ T+IV+ HR A+ D ++++ G++
Sbjct: 556 EAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVN 590
|
Length = 593 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 8e-08
Identities = 59/268 (22%), Positives = 108/268 (40%), Gaps = 89/268 (33%)
Query: 442 KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501
KL R V+ N++ + + P + ++ L +EA E +AI+G +G GK+T + L+
Sbjct: 314 KLHRNALEVE--NLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE 368
Query: 502 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE---D 558
EP G ++W +NI Y +D + D
Sbjct: 369 LEPDSGT------------VKWSE-----------------NANIGY-YAQDHAYDFEND 398
Query: 559 I---EWAA--KQAYVHEFILSLPCGYETLV----------DDDL------LSGGQKQRIA 597
+ +W + +Q E V DD+ LSGG+K R+
Sbjct: 399 LTLFDWMSQWRQ----------EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRML 448
Query: 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT-KRTVIVIAH------RL 650
+ +++ P +L++DE T+ +D ES + +L + + T+I ++H L
Sbjct: 449 FGKLMMQKPNVLVMDEPTNHMDMES-------IESLNMALEKYEGTLIFVSHDREFVSSL 501
Query: 651 STIKAVDRIVVIDDGRIIEV-GNHAELL 677
+T RI+ I +++ G + E L
Sbjct: 502 AT-----RIIEITPDGVVDFSGTYEEYL 524
|
Length = 530 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 40/250 (16%)
Query: 455 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 514
I F V ++ V +T+ E+ +VG SGSGKS + + + + ++ D
Sbjct: 11 IEFKTSDGW-VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTK-DNWRVTADRM 68
Query: 515 PLTDLDIRWL--REKIGFVG-------QEPQLL---QMDIKSNIMYGCP----KDVKNED 558
D+D+ L RE+ VG QEPQ + +M P K +
Sbjct: 69 RFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQR 128
Query: 559 IEWAAKQAYV---------HEFIL-SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608
W ++A H+ + S P YE L+ G+ Q++ IA A+ P +
Sbjct: 129 FGWRKRRAIELLHRVGIKDHKDAMRSFP--YE-------LTEGECQKVMIAIALANQPRL 179
Query: 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRI 667
L+ DE T+A++ ++ + +L L + T T+++I+H L + + D+I V+ G+
Sbjct: 180 LIADEPTNAMEPTTQAQIFRLLTRLNQNNNT--TILLISHDLQMLSQWADKINVLYCGQT 237
Query: 668 IEVGNHAELL 677
+E EL+
Sbjct: 238 VETAPSKELV 247
|
Length = 330 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 65/257 (25%), Positives = 113/257 (43%), Gaps = 50/257 (19%)
Query: 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512
+ I F V ++ V +T+ E+ +VG SGSGKS + + + + ++ D
Sbjct: 9 LTIEFKTSQGW-VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDN-WRVTAD 66
Query: 513 GFPLTDLDIRWL--REKIGFVG-------QEP------------QLLQMDIKSNIMYGCP 551
D+D+ L RE+ VG QEP QL+Q NI
Sbjct: 67 RMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQ-----NIPAWTY 121
Query: 552 KDVKNEDIEWAAKQAYV---------HEFIL-SLPCGYETLVDDDLLSGGQKQRIAIARA 601
K + W ++A H+ I+ S P YE L+ G+ Q++ IA A
Sbjct: 122 KGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP--YE-------LTEGECQKVMIAIA 172
Query: 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIV 660
+ P +L+ DE T++++ ++ + +L L + T T+++I+H L I + D+I
Sbjct: 173 LANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNT--TILLISHDLQMISQWADKIN 230
Query: 661 VIDDGRIIEVGNHAELL 677
V+ G+ +E EL+
Sbjct: 231 VLYCGQTVESAPSEELV 247
|
Length = 330 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 59/245 (24%), Positives = 106/245 (43%), Gaps = 39/245 (15%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
V +SF +R I +++ LT+ ++ AI+G SG GK+T + L+ P G+I
Sbjct: 8 VDMRGVSF---TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 510 YIDGFPLTDLDIRWL---REKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQ 565
DG + + L R+++ + Q L M++ N+ Y + +
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQ-------LPA 117
Query: 566 AYVHEFIL-SLPC----GYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
+H ++ L G L+ + LSGG +R A+ARAI +P +++ DE D
Sbjct: 118 PLLHSTVMMKLEAVGLRGAAKLMPSE-LSGGMARRAALARAIALEPDLIMFDEPFVGQDP 176
Query: 621 ESEHYVKGVL--------HALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
GVL AL C +V++H + + ++ D ++ D +I+ G
Sbjct: 177 ----ITMGVLVKLISELNSALGVTC------VVVSHDVPEVLSIADHAYIVADKKIVAHG 226
Query: 672 NHAEL 676
+ L
Sbjct: 227 SAQAL 231
|
Length = 269 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-06
Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 41/206 (19%)
Query: 482 AIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ-EPQLL 538
A++G+SG+GK+T +++L + +G I I GFP + G+ Q +
Sbjct: 910 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS---GYCEQNDIHSP 966
Query: 539 QMDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD-DDL------ 587
Q+ ++ +++Y PK+V E+ K +V E + LV+ D+L
Sbjct: 967 QVTVRESLIYSAFLRLPKEVSKEE-----KMMFVDEVM--------ELVELDNLKDAIVG 1013
Query: 588 ------LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
LS Q++R+ IA ++ +P+I+ +DE TS LD+ + V+ +RN T R
Sbjct: 1014 LPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI---VMRTVRNTVDTGR 1070
Query: 642 TVIVIAHRLS--TIKAVDRIVVIDDG 665
TV+ H+ S +A D ++++ G
Sbjct: 1071 TVVCTIHQPSIDIFEAFDELLLMKRG 1096
|
Length = 1470 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 7/82 (8%)
Query: 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 647
LSGG ++ A+ RA++ +P +LLLDE T+ LD E+ +++G L + ++I I+
Sbjct: 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQG------SIIFIS 210
Query: 648 HRLSTIKAV-DRIVVIDDGRII 668
H S I+ + RIV +D G+++
Sbjct: 211 HDRSFIRNMATRIVDLDRGKLV 232
|
Length = 635 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 588 LSGGQKQRIAIARAILR---DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644
LSGG+ QRI +A+ + + + +LDE T+ L + VL L TV+
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLV---DKGNTVV 226
Query: 645 VIAHRLSTIKAVDRIV 660
VI H L IK D I+
Sbjct: 227 VIEHNLDVIKCADWII 242
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-06
Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 34/230 (14%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525
P + V + E++ I GL G+ ++ V L + E S G I + G ++
Sbjct: 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHG---KKINNHNAN 318
Query: 526 EKI--GF--VGQEPQ----LLQMDIKSNIMYGCPKDVKNE-----------DIEWAAKQA 566
E I GF V +E + +DI N + ++ KN+ D +W
Sbjct: 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSM 378
Query: 567 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
V P G+ T + LSGG +Q++ I R +L P IL+LDE T +D ++ +
Sbjct: 379 RV-----KTP-GHRTQIGS--LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEI 430
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAE 675
++ L K + +I+I+ + + + DRI+V+ +G + + +
Sbjct: 431 YQLIAEL---AKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477
|
Length = 491 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 9e-06
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 429 DLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSG 488
D L + L+ V+ +NI+F + + + ++ +++ E +AIVG SG
Sbjct: 5 DELDARDVLA-----------VENLNIAFMQ-EQQKIAAVRNLSFSLQRGETLAIVGESG 52
Query: 489 SGKSTFVNLLLRLYEPSDGQIYIDGFPL 516
SGKS L+RL E + G + D L
Sbjct: 53 SGKSVTALALMRLLEQAGGLVQCDKMLL 80
|
Length = 623 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 9e-06
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 588 LSGGQKQRIAIARAILR---DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644
LSGG+ QR+ +A+ + + + +LDE T+ L + + VLH L + TVI
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK---GNTVI 879
Query: 645 VIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELL-----HKGRLYAKLVKR 689
VI H L IK D I+ + G I+ G E+ + G+ K +KR
Sbjct: 880 VIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLKKYLKR 935
|
Length = 935 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 42/226 (18%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR--- 522
P +N V T+ E++ + GL G+G++ + +L + G + +DG + R
Sbjct: 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVV---TRSPQ 322
Query: 523 -WLREKIGFVGQEPQ----LLQMDIKSNIMYGCPKDV---KNEDIEWAAKQAYVHEFI-- 572
L I ++ ++ + +L M +K N M ++ A +Q V +FI
Sbjct: 323 DGLANGIVYISEDRKRDGLVLGMSVKEN-MSLTALRYFSRAGGSLKHADEQQAVSDFIRL 381
Query: 573 -------LSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 625
+ G LLSGG +Q++AIAR ++ P +L+LDE T +D +
Sbjct: 382 FNIKTPSMEQAIG--------LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGA--- 430
Query: 626 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAV----DRIVVIDDGRI 667
K ++ L N K + I++ S + V DRI+V+ +GRI
Sbjct: 431 -KKEIYQLINQFKAEGLSIILVS--SEMPEVLGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 48/193 (24%), Positives = 95/193 (49%), Gaps = 15/193 (7%)
Query: 111 AKPITVWIALSRMWNLIGRDKW--IVLVAVASLIVAAVSEITMPRILA----EAVFSAQR 164
+W L R+ L W + +AV L VAA +E++ P +++ V
Sbjct: 2 RSFSQLWPTLKRL--LAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNL 59
Query: 165 EEAMVFHKSSRFLVLLCVTSGI--FSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFF 222
+V ++ ++ L + +G+ L F+ A + +V++LR + A L Q + F
Sbjct: 60 PLGLVAGLAAAYVGLQLLAAGLHYAQSLL---FNRAAVGVVQQLRTDVMDAALRQPLSAF 116
Query: 223 DTEAVGGLTSRLTADCQRLSNVIGNDINMILRN-SLQGAGAFINLLTLSWPLTLSALLIC 281
DT+ VG L SR+T D + + ++ + +LR+ +L GA + + +L W + L A++I
Sbjct: 117 DTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGA-MLVAMFSLDWRMALVAIMIF 175
Query: 282 SFLSIIVSVYGQY 294
+ +++ +Y +Y
Sbjct: 176 PAVLVVMVIYQRY 188
|
Length = 592 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 3e-05
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 580 ETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 637
E ++D D+ LSGG+ QR+AIA A+LRD DE TS LD V ++ L
Sbjct: 203 ENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEG- 261
Query: 638 KTKRTVIVIAHRLSTIKAVDRIVVI 662
+ V+V+ H L+ + + V I
Sbjct: 262 ---KYVLVVEHDLAVLDYLADNVHI 283
|
Length = 590 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 3e-05
Identities = 43/176 (24%), Positives = 82/176 (46%), Gaps = 33/176 (18%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N+++ + ++ ++ + +A++G +G GK+T + L+L + G+I+
Sbjct: 324 NVNYQIDGKQ---LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCG- 379
Query: 514 FPLTDLDIRWL---REKIGFVGQEPQLLQMDI----KSNIMY-GCPKDVKNEDIEWAAKQ 565
T L++ + R ++ +P+ MD K +M G P+ V
Sbjct: 380 ---TKLEVAYFDQHRAEL-----DPEKTVMDNLAEGKQEVMVNGRPRHV----------L 421
Query: 566 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
Y+ +F+ P T V LSGG++ R+ +AR L+ +L+LDE T+ LD E
Sbjct: 422 GYLQDFLFH-PKRAMTPVK--ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVE 474
|
Length = 635 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 586 DLLSGGQKQRIAIAR--AILR-DPA-ILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
LLSGG+K A+A AI + PA +LDE +ALD + V+ V ++ K +
Sbjct: 1065 SLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALD---DANVERVARLIKEMSKETQ 1121
Query: 642 TVIVIAHRLSTIKAVDRIVVI 662
IVI HR T++A DR+V +
Sbjct: 1122 F-IVITHRKGTMEAADRLVGV 1141
|
Length = 1163 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 648
SGG + RIA+ARA+ +P +LLLDE T+ LD + +++ L K +T IV++H
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL------LKWPKTFIVVSH 399
|
Length = 718 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 8e-05
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 31/216 (14%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD---LDIRW 523
ILN+V ++ + A++G SG+GK+T +N+ L E + G L + LD +
Sbjct: 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNV---LAERVTTGVITGGDRLVNGRPLDSSF 834
Query: 524 LREKIGFVGQEP-QLLQMDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFILSLPCG 578
R IG+V Q+ L ++ ++ + PK V + K YV E I L
Sbjct: 835 QR-SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSE-----KMEYVEEVIKLL--E 886
Query: 579 YETLVDDDL------LSGGQKQRIAIARAILRDPAILL-LDEATSALDSESEHYVKGVLH 631
E+ D + L+ Q++R+ I ++ P +LL LDE TS LDS++ +
Sbjct: 887 MESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQT---AWSICK 943
Query: 632 ALRNDCKTKRTVIVIAHRLSTI--KAVDRIVVIDDG 665
+R + ++ H+ S I + DR++++ G
Sbjct: 944 LMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 570 EFILSLPCGYETLV-DDDLLSGGQKQRIAIARAI---LRDPAILLLDEATSALDSESEHY 625
F++ + GY TL LSGG+ QRI +A I L + +LDE + L
Sbjct: 119 GFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGL-TGVLYVLDEPSIGLHPRDNDR 177
Query: 626 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 660
+ L LR+ TV+V+ H TI+A D ++
Sbjct: 178 LIETLKRLRD---LGNTVLVVEHDEDTIRAADHVI 209
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 47/218 (21%), Positives = 92/218 (42%), Gaps = 37/218 (16%)
Query: 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREKI 528
++ L + A E++ + G+ G+G++ L L G+I ++G + L L +
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340
Query: 529 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA--AKQAYVHE---FILSLPCGYE--- 580
++ ++ Q + + + + + N W A++ V E L++ +
Sbjct: 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA 400
Query: 581 --TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND-- 636
TL SGG +Q++ IA+ + P +L++DE T +GV + RND
Sbjct: 401 ARTL------SGGNQQKVLIAKCLEASPQLLIVDEPT-----------RGVDVSARNDIY 443
Query: 637 ------CKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRI 667
V+ I+ L I + DR++V+ G I
Sbjct: 444 QLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 41/200 (20%), Positives = 93/200 (46%), Gaps = 25/200 (12%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525
P ++ +C+ + E ++G++G+GK+T +L + G + G + +I +
Sbjct: 1953 PAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVH 2011
Query: 526 EKIGFVGQEPQLLQMD-----IKSNIMYGCPKDVKNEDIE----WAAKQAYVHEFILSLP 576
+ +G+ PQ +D + +Y + V E+IE W+ + + + L
Sbjct: 2012 QNMGYC---PQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA 2068
Query: 577 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 636
Y SGG K++++ A A++ P ++LLDE T+ +D ++ + + ++
Sbjct: 2069 GTY---------SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSI--- 2116
Query: 637 CKTKRTVIVIAHRLSTIKAV 656
+ R V++ +H + +A+
Sbjct: 2117 IREGRAVVLTSHSMEECEAL 2136
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 586 DLLSGGQKQRIAIA--RAILR-DPA-ILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
D LSGG+K +A+A AI + PA LLDE +ALD + V V + L+ +K
Sbjct: 1077 DNLSGGEKTLVALALIFAIQKYRPAPFYLLDEIDAALD---DQNVSRVANYLKE--LSKN 1131
Query: 642 T-VIVIAHRLSTIKAVDRIV 660
IVI+ R ++ DR+V
Sbjct: 1132 AQFIVISLREEMLEKADRLV 1151
|
This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 18/155 (11%)
Query: 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530
+ +T + + I G +G GKS+ + ++ + +PS G IY + ++ + +
Sbjct: 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYC----TY 74
Query: 531 VGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL-- 587
+G L L+M + N+ + E + A +H F L L+D+
Sbjct: 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETL-----YAAIHYFKL------HDLLDEKCYS 123
Query: 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622
LS G ++ +AIAR I + LLDE + L E+
Sbjct: 124 LSSGMQKIVAIARLIACQSDLWLLDEVETNLSKEN 158
|
Length = 195 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 15/131 (11%)
Query: 570 EFILSLPCGYETLVDD-DLLSGGQKQRIAIARAI---LRDPAILLLDEATSALDSESEHY 625
F++ + Y +L LSGG+ QRI +A I L + +LDE + L
Sbjct: 470 GFLIDVGLDYLSLSRAAGTLSGGEAQRIRLATQIGSGLTG-VLYVLDEPSIGLHQRDNRR 528
Query: 626 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH-AELLHKGRLYA 684
+ L LR+ T+IV+ H TI+A D ++ I G G H E++ G
Sbjct: 529 LINTLKRLRD---LGNTLIVVEHDEDTIRAADYVIDIGPG----AGEHGGEVVASGTP-- 579
Query: 685 KLVKRQTESLT 695
+ + +SLT
Sbjct: 580 EEILANPDSLT 590
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 588 LSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHY--VKGVLHALRNDCKTKRT 642
LSGG+ QRI +A+ + + + +LDE T+ L H+ +K +L L+ T
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGL-----HFDDIKKLLEVLQRLVDKGNT 884
Query: 643 VIVIAHRLSTIKAVDRIV 660
V+VI H L IK D I+
Sbjct: 885 VVVIEHNLDVIKTADYII 902
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 647
LS G+ ++ + +A++ +P +L+LDE LD S + +L +L ++ T++++
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLH---QSGITLVLVL 192
Query: 648 HRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 686
+R I V V+ D + E G E+L + L A+L
Sbjct: 193 NRFDEIPDFVQFAGVLADCTLAETGEREEILQQA-LVAQL 231
|
Length = 490 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 588 LSGGQKQRIAIARAIL---RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644
LSGG+ QR+ +A +L + P + +LDE T+ L + H +K +++ L++ TV+
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHT---HDIKALIYVLQSLTHQGHTVV 866
Query: 645 VIAHRLSTIKAVDRIV 660
+I H + +K D ++
Sbjct: 867 IIEHNMHVVKVADYVL 882
|
Length = 1809 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512
++I + S P+L++ L IE NE V +VG +G+GKST + +L DG+I +
Sbjct: 4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYE 63
|
Length = 635 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 20/101 (19%)
Query: 566 AYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIA-----RAILRDPAILLLDEATSALD 619
A V E I + LSGG+K+ A+A ++ P + +LDE LD
Sbjct: 65 AAVSAELIFTRLQ----------LSGGEKELSALALILALASLKPRP-LYILDEIDRGLD 113
Query: 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 660
+ + VIVI H + D+++
Sbjct: 114 PRDGQALAEAILEHLVK---GAQVIVITHLPELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Query: 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 648
G K R+ +A+A+ +P ILLLDE T+ LD + +++ VL+ RN T+I+I+H
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE-RNS-----TMIIISH 210
|
Length = 530 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 572 ILSLPCGYETLVDDDLL---SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 628
IL L +T+V D+++ SGGQK+R+ I+ L +DE ++ LDS + + +
Sbjct: 318 ILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVK 377
Query: 629 VLHALRNDCKTKRTVIV--IAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677
L + + T+ TV++ + T D I+++ +G+I+ G +L
Sbjct: 378 CLQQIVH--LTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHIL 426
|
Length = 1470 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 19/103 (18%)
Query: 588 LSGGQKQRIAIARAI---LRDPAILLLDEATSALDSESEHYVKGVLHALR---NDCKTKR 641
LSGG+ QRI +A I L + +LDE + L + L LR N
Sbjct: 482 LSGGEAQRIRLATQIGSGLTG-VLYVLDEPSIGLHQRDNERLIETLKRLRDLGN------ 534
Query: 642 TVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLH 678
TVIV+ H TI+A D I+ I G I+ G ELL
Sbjct: 535 TVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577
|
Length = 935 |
| >gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 0.002
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 588 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644
LSGG+ QR+ +A+ + + + +LDE T+ L E + VLH L + TV+
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK---GNTVV 887
Query: 645 VIAHRLSTIKAVDRIVVIDDG 665
VI H L IK D I ID G
Sbjct: 888 VIEHNLDVIKTADWI--IDLG 906
|
Length = 943 |
| >gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin, a member of the SMC protein family | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 586 DLLSGGQKQRIAIAR--AILR-DPA-ILLLDEATSALD-SESEHYVKGVLHALRNDCKTK 640
LLSGG+K A+A AI R P+ +LDE +ALD + E + + +L + +
Sbjct: 112 SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFAR-LLKEFSKETQF- 169
Query: 641 RTVIVIAHRLSTIKAVDRIV 660
IVI HR T++A DR+
Sbjct: 170 ---IVITHRKGTMEAADRLY 186
|
Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 197 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 695 | |||
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.98 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.98 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.97 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.97 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.96 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.96 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.96 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.96 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.96 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.95 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.95 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.95 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.94 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.93 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.93 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.93 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.93 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.92 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.92 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.92 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.92 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.91 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.91 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.9 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.89 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.89 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.87 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.87 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.87 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.86 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.85 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.84 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.84 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.83 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.82 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.82 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.81 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.8 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.8 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.79 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.77 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.75 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.75 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.73 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.72 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.7 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.67 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.66 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.66 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.66 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.65 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.65 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.62 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.61 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.52 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.52 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.51 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.48 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.44 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.4 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.39 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.39 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.38 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.29 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.26 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.24 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 99.24 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.21 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.2 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.18 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 99.14 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.14 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.13 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 99.12 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.11 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.09 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.08 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.02 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.01 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.0 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 98.99 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.97 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.96 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 98.96 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.95 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.95 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.91 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.9 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.9 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.9 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.86 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.73 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 98.72 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.71 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.68 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.68 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.67 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.66 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.56 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.54 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.49 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.47 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.47 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.46 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.46 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 98.46 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.45 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 98.45 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.44 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 98.42 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.41 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.39 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.32 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.3 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.3 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 98.3 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.29 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.27 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 98.22 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.21 | |
| PF06472 | 281 | ABC_membrane_2: ABC transporter transmembrane regi | 98.2 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.19 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 98.19 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.16 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 98.15 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 98.14 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 98.14 | |
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 98.12 | |
| PF13748 | 237 | ABC_membrane_3: ABC transporter transmembrane regi | 98.11 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.1 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.05 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.04 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 98.03 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.02 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.02 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.02 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.02 |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-130 Score=1089.03 Aligned_cols=569 Identities=41% Similarity=0.667 Sum_probs=536.6
Q ss_pred HHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccce--EEEeecchhhhHHHHhhhccccccccee
Q 005467 118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEA--MVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (695)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~--~~~~~~~~~l~~~~i~~~i~~~l~~~~~ 195 (695)
..++|++.|++|+++.+..++++++++++.++..|++++.+++....++. ..+.+....+.++.++.+++.++|.+++
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999876543221 1233445566677788889999999999
Q ss_pred chhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchh
Q 005467 196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 275 (695)
Q Consensus 196 ~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~l 275 (695)
..+++++..++|.++|+++++|+++|||.+++||++||+++|++.+.+.++..++..++++++.++.+++|+++||+|++
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltl 292 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTL 292 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccc
Q 005467 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355 (695)
Q Consensus 276 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (695)
++++.+|++.++..+|+++.++..++.|+..++.++...|.+++|+|||+|++|++|.+||.+..++..+++.|.+..++
T Consensus 293 v~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~ 372 (716)
T KOG0058|consen 293 VTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYG 372 (716)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccc
Q 005467 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435 (695)
Q Consensus 356 ~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~ 435 (695)
.+.+..++...+..+.++++|++++..|++|.|+|++|++|..++..++..++..+++++++.+|++|+||++|++|..+
T Consensus 373 ~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~ 452 (716)
T KOG0058|consen 373 IFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIP 452 (716)
T ss_pred HhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCC
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ccccccc-cccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCc
Q 005467 436 FLSEGVK-LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 514 (695)
Q Consensus 436 ~~~~~~~-~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~ 514 (695)
.. +.. +....|.|+|+||+|+||.+|+.+||+|+||+|+|||+||+||||||||||+++||+|||+|++|+|++||+
T Consensus 453 ~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~ 530 (716)
T KOG0058|consen 453 LT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGV 530 (716)
T ss_pred CC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCe
Confidence 43 332 225789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCcc
Q 005467 515 PLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQ 592 (695)
Q Consensus 515 di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQ 592 (695)
||+++++.+||++||+|.|||.||++||+|||+||. +++++|||++||++|++||||.++|+||||.|||+ .|||||
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~-~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGL-DNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCC-CCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 999999999999999999999999999999999996 59999999999999999999999999999999996 899999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEecc
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gt 672 (695)
||||||||||+|||.||||||||||||+|+|..|+++|.+. +++||||+|||||||+++||+|+|+|+|+++|.|+
T Consensus 610 KQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~----~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 610 KQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRL----MQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHh----hcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 99999999999999999999999999999999999999988 45699999999999999999999999999999999
Q ss_pred chhhhhcC-chhHHHHhhhccc
Q 005467 673 HAELLHKG-RLYAKLVKRQTES 693 (695)
Q Consensus 673 h~eLl~~~-g~Y~~l~~~q~~~ 693 (695)
|+||+++. |.|++|+++|...
T Consensus 686 h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred HHHHhhCcccHHHHHHHHhccc
Confidence 99999986 8999999999643
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-111 Score=979.38 Aligned_cols=570 Identities=35% Similarity=0.508 Sum_probs=495.4
Q ss_pred HHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEE----eecchhhhHHHHhhhcccccccc
Q 005467 118 IALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVF----HKSSRFLVLLCVTSGIFSGLRSG 193 (695)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~----~~~~~~l~~~~i~~~i~~~l~~~ 193 (695)
..+.|++++.+|+++.+++++++.++.....-+..++++..+......+.... ..+..+++.+.++.++..+++.+
T Consensus 650 ~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~ 729 (1228)
T KOG0055|consen 650 VSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHY 729 (1228)
T ss_pred ccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999998887776665555544333333334444321111111101 11334445566777788889999
Q ss_pred eechhhhHHHHHHHHHHHHhhhcccccccccc-ccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhcc
Q 005467 194 CFSIANIVLVKRLRETLYSALLFQDVYFFDTE-AVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP 272 (695)
Q Consensus 194 ~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~-~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~ 272 (695)
++..+++++..|+|...|+++++++.+|||.. ++|.+.+|+.+|...++.++..-+..+++++..+++.+++.|+++|+
T Consensus 730 ~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~ 809 (1228)
T KOG0055|consen 730 FFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWR 809 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999872 33999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcc
Q 005467 273 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 352 (695)
Q Consensus 273 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 352 (695)
|+++++...|++++......+..+...++..+...+.++.+.|+++|++||++|+.|++..+.|.+.+++..+...+.+.
T Consensus 810 lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~ 889 (1228)
T KOG0055|consen 810 LALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGL 889 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888888899999999999999999999999999999999999999999888887
Q ss_pred ccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCC
Q 005467 353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (695)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~ 432 (695)
+.++.....+.+.....++.+|+|++++.+|.+++.+++-.......-...+........++..+..|+.++|+++|++|
T Consensus 890 i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~ 969 (1228)
T KOG0055|consen 890 ISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKP 969 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCC
Confidence 77776666666666778889999999999999999887643322222112223344567788899999999999999998
Q ss_pred ccccc-ccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE
Q 005467 433 SNQFL-SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (695)
Q Consensus 433 ~~~~~-~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i 511 (695)
+.+.. +.+...+..+|+|+|+||+|+||.+|+.+||+|+||+|++||++||||||||||||++.||.|||||.+|+|.|
T Consensus 970 ~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~I 1049 (1228)
T KOG0055|consen 970 TIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKI 1049 (1228)
T ss_pred CCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 65433 23334456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccC
Q 005467 512 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 589 (695)
Q Consensus 512 dG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LS 589 (695)
||+|++++++++||++||+|+|||.||++||||||+||. ++++++||.+||+.|++|+||.+||+||||.|||+ +||
T Consensus 1050 Dg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~-~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLS 1128 (1228)
T KOG0055|consen 1050 DGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGS-EEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLS 1128 (1228)
T ss_pred CCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccC-CCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCC
Confidence 999999999999999999999999999999999999994 46999999999999999999999999999999995 999
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 669 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive 669 (695)
||||||||||||++|||+||+|||||||||+++|+.||+||++.+ .|||+|+|||||||+++||.|+|++||+|+|
T Consensus 1129 GGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~----~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1129 GGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM----EGRTTIVIAHRLSTIQNADVIAVLKNGKVVE 1204 (1228)
T ss_pred chHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh----cCCcEEEEecchhhhhcCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999994 5699999999999999999999999999999
Q ss_pred eccchhhhhcCchhHHHHhhhcc
Q 005467 670 VGNHAELLHKGRLYAKLVKRQTE 692 (695)
Q Consensus 670 ~Gth~eLl~~~g~Y~~l~~~q~~ 692 (695)
+|||+||++++|.|++|++.|..
T Consensus 1205 ~GtH~~L~~~~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1205 QGTHDELLAKRGIYFRLVQLQSS 1227 (1228)
T ss_pred cccHHHHHhCCCchHHHhhhccC
Confidence 99999999999999999999864
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-110 Score=958.41 Aligned_cols=625 Identities=29% Similarity=0.424 Sum_probs=545.4
Q ss_pred ccccceeEEeecCccccccccccccccccccccCCCCCCcchhchhhhHHHHHHHhhhcCCCCCeeecCCcccccCCCCC
Q 005467 33 FKSKHQFQIISNNKKFKRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAK 112 (695)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (695)
..+.|-.=...++++...+++| ...... ....+......++...++|..+ +.. +.+ +
T Consensus 82 ~~~~h~vVl~~~~~~~~~v~dp--~~g~~~------------l~~~e~~~~~tg~~l~l~~~~~--~~~---~~~----~ 138 (709)
T COG2274 82 WNGNHFVVLYKIDKNKVVVLDP--AKGIRR------------LSLEEFEKLWTGIALLLAPTAS--RKF---KDI----P 138 (709)
T ss_pred EcCCcEEEEEEecCCeEEEEeC--CCCcEE------------cCHHHHHHhhheeEEEEecccc--ccc---ccc----c
Confidence 3444666666677776677777 111111 1122223333367777777754 111 010 1
Q ss_pred chhHHHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhccccc-ceEEEeecchhhhHHHHhhhcccccc
Q 005467 113 PITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLR 191 (695)
Q Consensus 113 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~i~~~i~~~l~ 191 (695)
+ ..+.|++..+.++++.+..+++..++..+++++.|++....+|..... +...+......++++.+..+++.++|
T Consensus 139 ~----~~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr 214 (709)
T COG2274 139 P----FGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLR 214 (709)
T ss_pred c----cchHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 235788899999999999999999999999999999988888765422 11111112222334455667788999
Q ss_pred cceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhc
Q 005467 192 SGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW 271 (695)
Q Consensus 192 ~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw 271 (695)
.+.+.+.+.++..++..++|+|++++|++||+++++||+++|+ +|.++|+++++..+..++.+++++++.+++|+++||
T Consensus 215 ~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~ 293 (709)
T COG2274 215 TYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSW 293 (709)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 599999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhc
Q 005467 272 PLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES 351 (695)
Q Consensus 272 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 351 (695)
+|++++++.+|+++++..++.+..++..++..+..++.++.+.|+++|+++||+.+.|.+..++|++...++.+.+.+..
T Consensus 294 ~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~ 373 (709)
T COG2274 294 KLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTE 373 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccC
Q 005467 352 MAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLL 431 (695)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~ 431 (695)
......+....++..+..++++|+|+++|++|++|+|++++|.++...+..|+.++.+.+.++++...+.+|+.++++.+
T Consensus 374 ~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~ 453 (709)
T COG2274 374 KLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTP 453 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 66666666667777888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE
Q 005467 432 PSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (695)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i 511 (695)
+|.+........+...|+|+|+||+|+|+.++ +++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++
T Consensus 454 ~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~ 532 (709)
T COG2274 454 PEQEGDKTLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILL 532 (709)
T ss_pred cccccccccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 87543221234456779999999999998653 47999999999999999999999999999999999999999999999
Q ss_pred cCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccC
Q 005467 512 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 589 (695)
Q Consensus 512 dG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LS 589 (695)
||+|+.++++.++|++||||+||++||+|||+|||+++ ++++++||+++||+.|++||||.++|.||||+|||+ +||
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~-~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LS 611 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALG-NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLS 611 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcC-CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCC
Confidence 99999999999999999999999999999999999999 579999999999999999999999999999999995 999
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 669 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive 669 (695)
||||||||||||+++||+||||||||||||++||+.|+++|.+.. +|||+|+||||++++++||||+|||+|+|+|
T Consensus 612 GGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~----~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~ 687 (709)
T COG2274 612 GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL----QGRTVIIIAHRLSTIRSADRIIVLDQGKIVE 687 (709)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh----cCCeEEEEEccchHhhhccEEEEccCCceec
Confidence 999999999999999999999999999999999999999999984 4699999999999999999999999999999
Q ss_pred eccchhhhhcCchhHHHHhhhc
Q 005467 670 VGNHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 670 ~Gth~eLl~~~g~Y~~l~~~q~ 691 (695)
+|+|+||++.+|.|+++|+.|.
T Consensus 688 ~gs~~ell~~~g~y~~l~~~q~ 709 (709)
T COG2274 688 QGSHEELLAQGGLYARLYQQQE 709 (709)
T ss_pred cCCHHHHHHhcChHHHHHhccC
Confidence 9999999999999999999873
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-104 Score=929.78 Aligned_cols=630 Identities=35% Similarity=0.511 Sum_probs=533.6
Q ss_pred cccccccccccccccccCCCCCCcchhchhhhHHHHHHHhhhcCCCCCeeecCCcccccCCC-CCchhHHHHHHHHHHHh
Q 005467 49 KRVSFPITNSAFTDSGVPNNESNDNIIKFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPT-AKPITVWIALSRMWNLI 127 (695)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 127 (695)
+|+..|.|.+......... +.......++.|...+++|+.++.....|+...+....+.+. +++......++|+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 156 (711)
T TIGR00958 78 LCLATPSLSSLRALAFWEA-LDPAVRVALGLWSWFVWSYGAALPAAALWAVLSSAGASEKEAEQGQSETADLLFRLLGLS 156 (711)
T ss_pred HHHHHHHHHHHHHHHccCC-CccccccccccHHHHHHHHHHHHHHHHHHHhhCCccccccccccccchhhhHHHHHHHHH
Confidence 8999999887665543221 113333578889999999998876655666654331111000 11222345678899999
Q ss_pred ccceEEEehhHHHHHHHHhhccchhhHHHHhhhccccc-ceEEEeecchhhhHHHHhhhcccccccceechhhhHHHHHH
Q 005467 128 GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRL 206 (695)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~~~~~l 206 (695)
+++++.+..++++.++.++..+..|++++..+|..... +...+.....++.++.++..++.+++.+++...+.++..++
T Consensus 157 ~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 236 (711)
T TIGR00958 157 GRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRI 236 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888899999999999999999888765321 11111111222333444556677788888888999999999
Q ss_pred HHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHHHH
Q 005467 207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSI 286 (695)
Q Consensus 207 r~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~~~ 286 (695)
|.++|++++++|++||++.++|++++|+++|++.+++.+...+..++.+++.+++++++|+.++|++++++++.+|++++
T Consensus 237 r~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~ 316 (711)
T TIGR00958 237 REDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFL 316 (711)
T ss_pred HHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999988
Q ss_pred HHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhhh
Q 005467 287 IVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYR 366 (695)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 366 (695)
+..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+.....+........+..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (711)
T TIGR00958 317 AEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGM 396 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889888888888899999999999999999999999999999999999999999888777655444433333334444
Q ss_pred hheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccccccccccc
Q 005467 367 STQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRL 446 (695)
Q Consensus 367 ~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~~ 446 (695)
+..++++++|++++.+|++|+|++++++.|...+..|+..+++.+..++++..+.+|++++++.+++.+... ...+.+.
T Consensus 397 ~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~-~~~~~~~ 475 (711)
T TIGR00958 397 LIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG-TLAPLNL 475 (711)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC-CCCCCCC
Confidence 455667788999999999999999999999999999999999999999999999999999999876543211 1122234
Q ss_pred cceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHh
Q 005467 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~ 526 (695)
.++|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|+
T Consensus 476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred CCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 56899999999998755568999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhc
Q 005467 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILR 604 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~ 604 (695)
+|+||+|||+||++||+|||+||. ++++||++++|++.|++++||+++|+||||.+||+ +||||||||||||||+++
T Consensus 556 ~i~~v~Q~~~lF~gTIreNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~ 634 (711)
T TIGR00958 556 QVALVGQEPVLFSGSVRENIAYGL-TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR 634 (711)
T ss_pred hceEEecCccccccCHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999994 68899999999999999999999999999999994 899999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhH
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA 684 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~ 684 (695)
||+|||||||||+||+++|+.|++ .. . .+++|+|+||||+++++.||+|+|||+|+|+|+|+|+||++++|.|+
T Consensus 635 ~p~ILILDEpTSaLD~~te~~i~~-~~-~----~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~ 708 (711)
T TIGR00958 635 KPRVLILDEATSALDAECEQLLQE-SR-S----RASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYK 708 (711)
T ss_pred CCCEEEEEccccccCHHHHHHHHH-hh-c----cCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchH
Confidence 999999999999999999999988 22 2 34699999999999999999999999999999999999999999999
Q ss_pred HHH
Q 005467 685 KLV 687 (695)
Q Consensus 685 ~l~ 687 (695)
+|+
T Consensus 709 ~lv 711 (711)
T TIGR00958 709 HLV 711 (711)
T ss_pred hcC
Confidence 874
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-102 Score=818.12 Aligned_cols=545 Identities=27% Similarity=0.396 Sum_probs=465.8
Q ss_pred hHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecch-hhhHHHH------hhhcccccccceechhhhHHHHHHHHH
Q 005467 137 AVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSR-FLVLLCV------TSGIFSGLRSGCFSIANIVLVKRLRET 209 (695)
Q Consensus 137 ~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~-~l~~~~i------~~~i~~~l~~~~~~~~~~~~~~~lr~~ 209 (695)
+++++++.-++....|.+.+..++.....+. +..... ..+++.+ .+++++-+|.++...+.+...+++...
T Consensus 220 cl~ll~i~rli~~~~pi~~k~iv~~ltap~~--~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~ 297 (790)
T KOG0056|consen 220 CLFLLIIGRLINVSLPILSKWIVDELTAPDT--FQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETE 297 (790)
T ss_pred HHHHHHHHHHHhhhhHHhHHHHHHhhcCcch--hhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHH
Confidence 3455666667777888877777765442221 111111 1222222 235677889999999999999999999
Q ss_pred HHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhH-HHHhhccchhhHHHHHHHHHHHH
Q 005467 210 LYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN-LLTLSWPLTLSALLICSFLSIIV 288 (695)
Q Consensus 210 lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~-l~~~sw~l~li~l~~~~l~~~~~ 288 (695)
+|+|+..+++.|+-++++||++.-++...+.+. +....+..+...++-+.+++++ ...++||.+++++++..++..+.
T Consensus 298 lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~T 376 (790)
T KOG0056|consen 298 LFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVT 376 (790)
T ss_pred HHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhhee
Confidence 999999999999999999999998877766655 4444444444444444455554 45689999999999988887777
Q ss_pred HHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhhhhh
Q 005467 289 SVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRST 368 (695)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (695)
......+.+.++++..+..+......+++-|.+|||.||+|+++.++|++...++.+...+........+...+.+..+.
T Consensus 377 i~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lg 456 (790)
T KOG0056|consen 377 IKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLG 456 (790)
T ss_pred eeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 66666666677777666666777788999999999999999999999999999999888876554455555555555555
Q ss_pred eehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccccccccccccc
Q 005467 369 QVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMG 448 (695)
Q Consensus 369 ~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~~~~ 448 (695)
.++..++..|.|..+.+|+|+.+.|..|..++..|+..++..+..++.+...+|+++|+++++||..|.++..+....+|
T Consensus 457 ll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G 536 (790)
T KOG0056|consen 457 LLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQG 536 (790)
T ss_pred HhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCC
Confidence 55556677888999999999999999999999999999999999999999999999999999998877666555555678
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+|+||+|.|+. ++|||+||||+++||+++|+|||||+||||++++|.||||.++|.|+|||+||+.+...++|++|
T Consensus 537 ~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 537 KIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred eEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 9999999999974 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCC
Q 005467 529 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 529 ~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p 606 (695)
|+||||+.||++||.+||+|| ++++++||+++|+++|++||-|.++|+||+|+|||+ +||||||||+||||+++|+|
T Consensus 615 GVVPQDtvLFNdTI~yNIrya-k~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P 693 (790)
T KOG0056|consen 615 GVVPQDTVLFNDTILYNIRYA-KPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP 693 (790)
T ss_pred CcccCcceeecceeeeheeec-CCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC
Confidence 999999999999999999999 589999999999999999999999999999999996 89999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc-CchhHH
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAK 685 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~-~g~Y~~ 685 (695)
.|++|||||||||+.||+.||.+|.++. .+||.|+|||||||+-+||.|+|++||+|+|+|+||||+++ +|.|++
T Consensus 694 ~iIlLDEATSALDT~tER~IQaaL~rlc----a~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~ 769 (790)
T KOG0056|consen 694 SIILLDEATSALDTNTERAIQAALARLC----ANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYAD 769 (790)
T ss_pred cEEEEcchhhhcCCccHHHHHHHHHHHh----cCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHH
Confidence 9999999999999999999999999994 46999999999999999999999999999999999999998 999999
Q ss_pred HHhhhc
Q 005467 686 LVKRQT 691 (695)
Q Consensus 686 l~~~q~ 691 (695)
||+.|+
T Consensus 770 MWq~qq 775 (790)
T KOG0056|consen 770 MWQAQQ 775 (790)
T ss_pred HHHHHH
Confidence 997664
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-102 Score=908.80 Aligned_cols=564 Identities=35% Similarity=0.536 Sum_probs=487.4
Q ss_pred HHHHHHhccceEEEehhHHHHHHHHhhccchhhHH---HHhhhcccccceEE----EeecchhhhHHHHhhhcccccccc
Q 005467 121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRIL---AEAVFSAQREEAMV----FHKSSRFLVLLCVTSGIFSGLRSG 193 (695)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~---~~~i~~~~~~~~~~----~~~~~~~l~~~~i~~~i~~~l~~~ 193 (695)
..+++|... +..++.++..+.+.+.++..|.+. +..++......... ..+....+..+.++..+..+++..
T Consensus 16 ~~lf~~a~~--~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~ 93 (1228)
T KOG0055|consen 16 FKLFRFADR--FDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVS 93 (1228)
T ss_pred HHheeccch--hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 333445556667777777788642 23332211111000 111222233344555566778888
Q ss_pred eechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccc
Q 005467 194 CFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPL 273 (695)
Q Consensus 194 ~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l 273 (695)
++.+.+++...++|...++.++++++.|||.+.+|++.+|+++|++.+++.++.-+..++..+.++++.++..|++.|+|
T Consensus 94 c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~L 173 (1228)
T KOG0055|consen 94 CWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKL 173 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccc
Q 005467 274 TLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMA 353 (695)
Q Consensus 274 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 353 (695)
+++.+...|++.+....+.+...+...+.++..++..+.+.|+++++|||.+|+.|+++.++|.+.++...+...+...+
T Consensus 174 tlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~ 253 (1228)
T KOG0055|consen 174 TLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLF 253 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999989888899899999999999999999999999999999999999999999999999988877
Q ss_pred cccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCc
Q 005467 354 YGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS 433 (695)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~ 433 (695)
.++..+...++.....++.+|+|+.++..+..++|+++........-...+...+..+..+..+.+|+.++++++|..|+
T Consensus 254 ~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~ 333 (1228)
T KOG0055|consen 254 KGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPS 333 (1228)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCC
Confidence 77776666666667778899999999999999999887654333222233334455677888899999999999999887
Q ss_pred ccccc-cccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 434 NQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 434 ~~~~~-~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
.+... .+......+|+|+|+||+|+||.+++.++|+|+||+||+||++||||||||||||+++||+|||+|++|+|+||
T Consensus 334 i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~id 413 (1228)
T KOG0055|consen 334 IDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLID 413 (1228)
T ss_pred CCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEc
Confidence 64322 22233446789999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCC
Q 005467 513 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSG 590 (695)
Q Consensus 513 G~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSG 590 (695)
|.|+++++.+++|++||+|.|||.||++||+|||+|| ++|+|++|+++|||+|++|+||.+||+||||++||+ .|||
T Consensus 414 G~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G-~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSG 492 (1228)
T KOG0055|consen 414 GEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYG-KPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSG 492 (1228)
T ss_pred CccchhcchHHHHhhcCeeeechhhhcccHHHHHhcC-CCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCCh
Confidence 9999999999999999999999999999999999999 589999999999999999999999999999999996 7999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEe
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 670 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~ 670 (695)
||||||||||||+|||+||+|||||||||+++|+.||++|++.. .|||+|+||||||||++||+|+||++|+|+|.
T Consensus 493 GQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~----~grTTivVaHRLStIrnaD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 493 GQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS----KGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ 568 (1228)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh----cCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999984 56999999999999999999999999999999
Q ss_pred ccchhhhhcCchhHHHHhhhc
Q 005467 671 GNHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 671 Gth~eLl~~~g~Y~~l~~~q~ 691 (695)
|+|+||++..|.|.+|++.|.
T Consensus 569 G~h~ELi~~~G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 569 GTHDELIALGGIYSSLVRLQE 589 (1228)
T ss_pred cCHHHHHhccchHHHHHHHHh
Confidence 999999999999999999884
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-102 Score=901.71 Aligned_cols=565 Identities=21% Similarity=0.291 Sum_probs=478.8
Q ss_pred HHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccc--cceEEEeecchhhhHHHHhhhcccccccceec
Q 005467 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR--EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (695)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~ 196 (695)
.++|+++|++|+|+.+++++++.++..++.+..|++++..++.... .+...+.....+++++.++.+++.+++.+...
T Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 9 LTRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999989999999999999999888875321 11111111111222334445566778888888
Q ss_pred hhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhh
Q 005467 197 IANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLS 276 (695)
Q Consensus 197 ~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li 276 (695)
..+.++..++|.++|+|++++|+++|++.++|++++|+++|++.+++++...+..++..++..++++++|++++|+++++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999998888888888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcccccc
Q 005467 277 ALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL 356 (695)
Q Consensus 277 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (695)
+++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..+++.+...+..+....
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFL 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888888999999999999999999999999999999999999888877665444333
Q ss_pred ceeehhhhhhhheehheeecceeeeccccChhhh---------hhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHh
Q 005467 357 WNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQL---------TKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQL 427 (695)
Q Consensus 357 ~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l---------~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~ 427 (695)
.......+..+..+++++++++.+ .|.+|+|++ ++++++...+..|+..++..+..+.++..+.+|+.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 327 (588)
T PRK11174 249 SSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTF 327 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444433 377888765 2223555677788888888899999999999999999
Q ss_pred hccCCcccccccccccc-cccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC
Q 005467 428 IDLLPSNQFLSEGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (695)
Q Consensus 428 l~~~~~~~~~~~~~~~~-~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~ 506 (695)
++.+++... ......+ ...++|+|+||+|.|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+| |++
T Consensus 328 l~~~~~~~~-~~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 328 LETPLAHPQ-QGEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred HcCCCcccC-CCccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 987654221 1111111 123579999999987643 47999999999999999999999999999999999999 999
Q ss_pred ceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc
Q 005467 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 586 (695)
Q Consensus 507 G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~ 586 (695)
|+|++||+|+++++.+++|++|+||||||+||+|||+|||+||+ +++++||+++|++.|+++|||++||+||||.|||+
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCC-CCCCHHHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 99999999999999999999999999999999999999999994 68999999999999999999999999999999995
Q ss_pred --ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 587 --LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 587 --~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
+||||||||||||||+++||+||||||||||||++||+.|+++|++.. +++|+|+||||++++++||+|+||++
T Consensus 483 G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~----~~~TvIiItHrl~~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS----RRQTTLMVTHQLEDLAQWDQIWVMQD 558 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh----CCCEEEEEecChHHHHhCCEEEEEeC
Confidence 899999999999999999999999999999999999999999999874 46999999999999999999999999
Q ss_pred CeEEEeccchhhhhcCchhHHHHhhhccc
Q 005467 665 GRIIEVGNHAELLHKGRLYAKLVKRQTES 693 (695)
Q Consensus 665 G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~ 693 (695)
|+|+|+|+|+||++++|.|+++|+.|.+-
T Consensus 559 G~i~e~G~~~eL~~~~~~y~~l~~~q~~~ 587 (588)
T PRK11174 559 GQIVQQGDYAELSQAGGLFATLLAHRQEE 587 (588)
T ss_pred CeEeecCCHHHHHhcchHHHHHHHHhhcC
Confidence 99999999999999999999999999764
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-102 Score=894.61 Aligned_cols=561 Identities=37% Similarity=0.598 Sum_probs=490.6
Q ss_pred HHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccccccceechhh
Q 005467 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIAN 199 (695)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~ 199 (695)
+++++.+.+ ++ .+..++++.++..+..+..|.++...++... .+.........++.++.++.+++.++..+...+.+
T Consensus 4 ~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (567)
T COG1132 4 LRRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLG 80 (567)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666 66 7777788888888999999998888776543 11000111122233344445566666667777777
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHH
Q 005467 200 IVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALL 279 (695)
Q Consensus 200 ~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~ 279 (695)
.++..++|.++|++++++|+.+|++.++|++++|+++|++.+++.+......+...++..++.+++++.++|++++++++
T Consensus 81 ~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 160 (567)
T COG1132 81 QKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLL 160 (567)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999988876666657788888889999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcccccccee
Q 005467 280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM 359 (695)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (695)
..|++.+...++.++.++..+..++..++.++.+.|.++|++++|+|+.++.+.+++++..++..+...+.....+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (567)
T COG1132 161 ILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAP 240 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888887778888889999999999999999999999999999999999999888888877665555555444
Q ss_pred ehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccccc
Q 005467 360 SFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 439 (695)
Q Consensus 360 ~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~ 439 (695)
....+..+..++++++|++.+..|.+++|.+++|+.|...+..|+..++..+..+..+..+.+|++++++.+++..+.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~ 320 (567)
T COG1132 241 LMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD 320 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC
Confidence 55555566667788899999999999999999999999999999999999999999999999999999998775433222
Q ss_pred ccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc
Q 005467 440 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (695)
Q Consensus 440 ~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i 519 (695)
. .....++|+|+||+|+|++ ++++|+|+||+|+|||++||||||||||||++++|+|||+|++|+|++||+|++++
T Consensus 321 ~--~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i 396 (567)
T COG1132 321 P--LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI 396 (567)
T ss_pred C--CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhc
Confidence 1 2234578999999999985 24799999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHH
Q 005467 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIA 597 (695)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIa 597 (695)
+.++||++||+||||++||++||+|||+||+ ++++|||+++||+.|++||||+++|+||||.|||+ +||||||||||
T Consensus 397 ~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~-~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrla 475 (567)
T COG1132 397 SLDSLRKRIGIVSQDPLLFSGTIRENIALGR-PDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLA 475 (567)
T ss_pred CHHHHHHhccEEcccceeecccHHHHHhcCC-CCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHH
Confidence 9999999999999999999999999999995 68999999999999999999999999999999985 89999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||++|||||||||||||+||++||+.|++++.+.. ++||+|+||||++|+++||+|+|||+|+|+|+|+|+||+
T Consensus 476 iARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~----~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 476 IARALLRNPPILILDEATSALDTETEALIQDALKKLL----KGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred HHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh----cCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999999774 458999999999999999999999999999999999999
Q ss_pred hcCchhHHHHhhhcc
Q 005467 678 HKGRLYAKLVKRQTE 692 (695)
Q Consensus 678 ~~~g~Y~~l~~~q~~ 692 (695)
+++|.|++||+.|..
T Consensus 552 ~~~g~y~~l~~~~~~ 566 (567)
T COG1132 552 AKGGLYARLYQAQGG 566 (567)
T ss_pred HcCCHHHHHHHHhhc
Confidence 999999999998864
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-99 Score=890.23 Aligned_cols=593 Identities=25% Similarity=0.350 Sum_probs=504.1
Q ss_pred chhhhHHHHHHHhhhcCCCCCeeecCCcccccCCCCCchhHHHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHH
Q 005467 76 KFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRIL 155 (695)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 155 (695)
...+....+-+++..++|++.+.+. .+ ++ ..+++++.+++++++.+..++++.++..+..++.|+++
T Consensus 113 ~~~ef~~~~~g~~l~~~~~~~~~~~-----~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~ 179 (708)
T TIGR01193 113 SKEDFYEEWTGIAIFISPTPEYKPI-----KE----KE----NSLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYL 179 (708)
T ss_pred cHHHHHhhCCCEEEEEEeccccccc-----cc----cc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556667777776654211 00 11 23567888999999888888888888888889999999
Q ss_pred HHhhhcccccceE-EEeecchhhhHHHHhhhcccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccc
Q 005467 156 AEAVFSAQREEAM-VFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRL 234 (695)
Q Consensus 156 ~~~i~~~~~~~~~-~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl 234 (695)
+.++|........ .+......++++.++.+++.+++.++..+.+.++..++|.++|+|++++|+.||+++++|++++|+
T Consensus 180 ~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~ 259 (708)
T TIGR01193 180 QKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRF 259 (708)
T ss_pred HHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHh
Confidence 8888754322110 000011112223344556778888888889999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHH
Q 005467 235 TADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQ 314 (695)
Q Consensus 235 ~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (695)
+ |++.+++++...+..++.+++..++++++|++++|++++++++.+|+++++..++.++.++..++.++..++.++.+.
T Consensus 260 ~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (708)
T TIGR01193 260 T-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSII 338 (708)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 999999988877777777888788888889999999999999999999988888888888888889998999999999
Q ss_pred HhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhhhhheehheeecceeeeccccChhhhhhhh
Q 005467 315 ETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYV 394 (695)
Q Consensus 315 E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~ 394 (695)
|+++|+++||+||.|+.+.++|++...+..+...+.............++..+..++++++|++++.+|++|+|++++|.
T Consensus 339 e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~ 418 (708)
T TIGR01193 339 EDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFN 418 (708)
T ss_pred HHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999999999998888877776554443333333444445566778899999999999999999999
Q ss_pred hhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeE
Q 005467 395 LYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLT 474 (695)
Q Consensus 395 ~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~ 474 (695)
.+...+..|+..+.+.+..++++..+.+|+.++++.+++..........+...+.|+|+||+|+|+++ +++|+|+||+
T Consensus 419 ~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~isl~ 496 (708)
T TIGR01193 419 ALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYG--SNILSDISLT 496 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCC--CcceeceeEE
Confidence 99999999999999999999999999999999998776543221111122345689999999999743 4799999999
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCC
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 554 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~ 554 (695)
|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|||||||++||+|||+|||++|+++++
T Consensus 497 i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~ 576 (708)
T TIGR01193 497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENV 576 (708)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999943689
Q ss_pred CchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHh
Q 005467 555 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA 632 (695)
Q Consensus 555 ~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~ 632 (695)
++|++++|++.|+++|||+++|+||||.+||+ +|||||||||+||||++++|+|||||||||+||+++|+.|+++|.+
T Consensus 577 ~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~ 656 (708)
T TIGR01193 577 SQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN 656 (708)
T ss_pred CHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999984 8999999999999999999999999999999999999999999987
Q ss_pred hhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHHhh
Q 005467 633 LRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 689 (695)
Q Consensus 633 ~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~~ 689 (695)
. +++|+|+||||+++++.||+|+||++|+++|.|+|+||++++|.|++||++
T Consensus 657 ~-----~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~~ 708 (708)
T TIGR01193 657 L-----QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIHN 708 (708)
T ss_pred h-----cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhhC
Confidence 4 358999999999999999999999999999999999999999999999863
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-98 Score=883.09 Aligned_cols=559 Identities=27% Similarity=0.355 Sum_probs=486.7
Q ss_pred HHHHHHH-hccceEEEehhHHHHHHHHhhccchhhHHHHhhhccccc-ceEEEeecchhhhHHHHhhhcccccccceech
Q 005467 120 LSRMWNL-IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (695)
Q Consensus 120 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~ 197 (695)
+++++++ ++++|+.++..+++.++..++.++.|+++...+|..... +...+......++++.++.+++.+++.++...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (686)
T TIGR03797 123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLR 202 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555 577888888888888888999999999988888754321 11111111111222334456677888888888
Q ss_pred hhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhH
Q 005467 198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (695)
Q Consensus 198 ~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~ 277 (695)
.+.++..++|..+|+|++++|+.||+++++|++++|++ |++.+++++...+...+.+++..++++++|++++|++++++
T Consensus 203 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 281 (686)
T TIGR03797 203 LETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVA 281 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999996 89999998887777777777777888888999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccc
Q 005467 278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 357 (695)
Q Consensus 278 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (695)
++++++++++..++.+..++..++.++..++.++.+.|+++|+++||++|.|+...++|++..++..+...+........
T Consensus 282 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (686)
T TIGR03797 282 VALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLL 361 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888888888888888999999999999999999999999999999999998888877765554444
Q ss_pred eeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccc
Q 005467 358 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 437 (695)
Q Consensus 358 ~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~ 437 (695)
......+..+..++++++|++++.+|++|+|+++++..+...+..|+..+.+.+..++++..+.+|+.++++.+++....
T Consensus 362 ~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 441 (686)
T TIGR03797 362 TVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 44444555566677888999999999999999999999999999999999999999999999999999999876653221
Q ss_pred ccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC
Q 005467 438 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517 (695)
Q Consensus 438 ~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~ 517 (695)
........++|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|++
T Consensus 442 --~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 518 (686)
T TIGR03797 442 --KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLA 518 (686)
T ss_pred --cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcC
Confidence 11122335689999999999753 357999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchh
Q 005467 518 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQR 595 (695)
Q Consensus 518 ~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQR 595 (695)
+++.+++|++|||||||++||+|||+|||++| ++ +++|++++|++.|+++++|+++|+||||.+||+ +||||||||
T Consensus 519 ~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~-~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQR 596 (686)
T TIGR03797 519 GLDVQAVRRQLGVVLQNGRLMSGSIFENIAGG-AP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQR 596 (686)
T ss_pred cCCHHHHHhccEEEccCCccCcccHHHHHhcC-CC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999 45 899999999999999999999999999999984 899999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchh
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~e 675 (695)
|+||||++++|+|||||||||+||++||+.|+++|++. ++|+|+||||+++++.||+|+|||+|+|+|.|+|+|
T Consensus 597 ialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~------~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~ 670 (686)
T TIGR03797 597 LLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL------KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDE 670 (686)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh------CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999875 379999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHhhh
Q 005467 676 LLHKGRLYAKLVKRQ 690 (695)
Q Consensus 676 Ll~~~g~Y~~l~~~q 690 (695)
|++++|.|++||+.|
T Consensus 671 Ll~~~~~y~~l~~~q 685 (686)
T TIGR03797 671 LMAREGLFAQLARRQ 685 (686)
T ss_pred HHhCCcHHHHHHHhc
Confidence 999999999999877
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-99 Score=933.59 Aligned_cols=567 Identities=28% Similarity=0.378 Sum_probs=468.5
Q ss_pred HHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccc-eE-EEeecchhhhHHHHhhhcccccccceec
Q 005467 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE-AM-VFHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (695)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~-~~-~~~~~~~~l~~~~i~~~i~~~l~~~~~~ 196 (695)
.+++++++++++++.++++++++++..++..+.|++++..++.....+ .. ....+..++++++++.+++.+++.++..
T Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~ 891 (1466)
T PTZ00265 812 NLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNN 891 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888777777777888888888888888888775432111 00 0011223334445566677888899999
Q ss_pred hhhhHHHHHHHHHHHHhhhccccccccc--cccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccch
Q 005467 197 IANIVLVKRLRETLYSALLFQDVYFFDT--EAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT 274 (695)
Q Consensus 197 ~~~~~~~~~lr~~lf~~ll~~~~~ff~~--~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~ 274 (695)
++++++..++|.++|++++++|++||++ +++|++++|+++|++.+++.+...+..++..++.++++++++++++|+++
T Consensus 892 ~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~ 971 (1466)
T PTZ00265 892 VIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVA 971 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 88999999999999999999888888888888888888899999999988
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhh-hH-----------------hhHhhhcchhhHHHhhhheeEEEeecchhhhhhhH
Q 005467 275 LSALLICSFLSIIVSVYGQYQKRAS-VL-----------------TQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY 336 (695)
Q Consensus 275 li~l~~~~l~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~ 336 (695)
++++++. +++...+.++.+... ++ .++..++.+..++|+++|+++||+|+.|+++.++|
T Consensus 972 l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~ 1048 (1466)
T PTZ00265 972 AVLTGTY---FIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLI 1048 (1466)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHH
Confidence 7765433 333333333322211 11 12234567889999999999999999999999999
Q ss_pred HHHHHHhhcchhhhccccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHH
Q 005467 337 KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ 416 (695)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 416 (695)
++..++..+...+.....+.+......+..+..++++++|++++..|.+|+|++++++.+......++..++..+..+.+
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 1128 (1466)
T PTZ00265 1049 EKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSEN 1128 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888877766555555544445555555677889999999999999999988775544333345567778888999
Q ss_pred hhcchhhHHHhhccCCcccccc-cccc---cccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChh
Q 005467 417 SIGATEKVFQLIDLLPSNQFLS-EGVK---LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKS 492 (695)
Q Consensus 417 ~~~a~~rl~~~l~~~~~~~~~~-~~~~---~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKS 492 (695)
+..+++|++++++.+++.+..+ .+.. .....+.|+|+||+|+||++++.+||+|+||+|+|||++|||||||||||
T Consensus 1129 a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKS 1208 (1466)
T PTZ00265 1129 AKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKS 1208 (1466)
T ss_pred HHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHH
Confidence 9999999999999876432111 1111 12345789999999999876556899999999999999999999999999
Q ss_pred hHHHHHHhhhcC------------------------------------------------------CCceEEEcCccCCc
Q 005467 493 TFVNLLLRLYEP------------------------------------------------------SDGQIYIDGFPLTD 518 (695)
Q Consensus 493 TLl~LL~rly~p------------------------------------------------------~~G~I~idG~di~~ 518 (695)
||++||+|||+| ++|+|++||+|+++
T Consensus 1209 Tl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~ 1288 (1466)
T PTZ00265 1209 TVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICD 1288 (1466)
T ss_pred HHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHh
Confidence 999999999999 69999999999999
Q ss_pred chhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhH
Q 005467 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRI 596 (695)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRI 596 (695)
++.++||++||||+|||+||+|||+|||+|| .+++++||+++||+.|++||||++||+||||.|||+ +|||||||||
T Consensus 1289 ~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g-~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRI 1367 (1466)
T PTZ00265 1289 YNLKDLRNLFSIVSQEPMLFNMSIYENIKFG-KEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRI 1367 (1466)
T ss_pred CCHHHHHhhccEeCCCCccccccHHHHHhcC-CCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHH
Confidence 9999999999999999999999999999999 468999999999999999999999999999999995 8999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC----CeEE-Eec
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD----GRII-EVG 671 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~----G~Iv-e~G 671 (695)
||||||+|||+||||||||||||++||+.|+++|.+... .++||+|+||||++++++||+|+||++ |+++ |+|
T Consensus 1368 aIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~--~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~G 1445 (1466)
T PTZ00265 1368 AIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKD--KADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHG 1445 (1466)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhc--cCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEec
Confidence 999999999999999999999999999999999998731 136999999999999999999999999 9955 999
Q ss_pred cchhhhh-cCchhHHHHhhhc
Q 005467 672 NHAELLH-KGRLYAKLVKRQT 691 (695)
Q Consensus 672 th~eLl~-~~g~Y~~l~~~q~ 691 (695)
+|+||++ ++|.|++||+.|.
T Consensus 1446 th~eLl~~~~g~Y~~l~~~~~ 1466 (1466)
T PTZ00265 1446 THEELLSVQDGVYKKYVKLAK 1466 (1466)
T ss_pred CHHHHHhcCCChHHHHHhhcC
Confidence 9999998 5999999998773
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-98 Score=881.29 Aligned_cols=590 Identities=24% Similarity=0.356 Sum_probs=502.6
Q ss_pred chhhhHHHHHHHhhhcCCCCCeeecCCcccccCCCCCchhHHHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHH
Q 005467 76 KFFDYFQDLVAFIRQVFPGGSWWNLSDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRIL 155 (695)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 155 (695)
...+....+-+++..++|+..+... .+ ++ ..+++++++++++++.+..++++.++..+..++.|+++
T Consensus 111 ~~~e~~~~~~g~~l~~~~~~~~~~~-----~~----~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~ 177 (710)
T TIGR03796 111 SLEEFDESFTGVVLTFEPGPEFQKG-----GR----KP----SLLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFS 177 (710)
T ss_pred cHHHHHhhCCCeEEEEEECcccccc-----Cc----Cc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666667776544210 00 11 23567888888998888888888888888889999998
Q ss_pred HHhhhcccccce-EEEeecchhhhHHHHhhhcccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccc
Q 005467 156 AEAVFSAQREEA-MVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRL 234 (695)
Q Consensus 156 ~~~i~~~~~~~~-~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl 234 (695)
+..+|....... ..+......++++.++.+++.+++.++....+.++..++|.++|+|++++|++||+++++|++++|+
T Consensus 178 ~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~ 257 (710)
T TIGR03796 178 QIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRV 257 (710)
T ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHh
Confidence 888875432211 1010011112223344556778888888889999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHH
Q 005467 235 TADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQ 314 (695)
Q Consensus 235 ~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (695)
++| +.+++++...+..++.+++.+++++++|++++|++++++++++|+++++..++.+..++..++.++..++.++.+.
T Consensus 258 ~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (710)
T TIGR03796 258 QLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAI 336 (710)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887 7899998888888888898889999999999999999999999998888888888888888888888889999999
Q ss_pred HhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhhhhheehheeecceeeeccccChhhhhhhh
Q 005467 315 ETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYV 394 (695)
Q Consensus 315 E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~ 394 (695)
|.++|+++||++|.|+.+.++|++...+..+...+.............++..+..++++++|++++..|++|+|+++++.
T Consensus 337 e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~ 416 (710)
T TIGR03796 337 SGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQ 416 (710)
T ss_pred HHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999999999988888877766554444444444455555667788999999999999999999999
Q ss_pred hhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccc----c-cccc-ccccceEEEEEEeeecCCCCcccee
Q 005467 395 LYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS----E-GVKL-QRLMGHVQFVNISFHYPSRPTVPIL 468 (695)
Q Consensus 395 ~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~----~-~~~~-~~~~~~I~f~nVsF~Y~~~~~~~vL 468 (695)
.+...+..|+..+.+.+..++++..+.+|+.++++.+++..... . .... +...+.|+|+||+|+|++. ++++|
T Consensus 417 ~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL 495 (710)
T TIGR03796 417 SLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLI 495 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcc
Confidence 99999999999999999999999999999999998776543211 0 0111 2235689999999999864 35799
Q ss_pred eeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccc
Q 005467 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 548 (695)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~ 548 (695)
+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|||||||++||+|||+|||++
T Consensus 496 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l 575 (710)
T TIGR03796 496 ENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTL 575 (710)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhh
Q 005467 549 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626 (695)
Q Consensus 549 g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I 626 (695)
+ .+++++|++++|++.++++++|+++|+||||.+||+ +||||||||||||||++++|+|||||||||+||++||+.|
T Consensus 576 ~-~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i 654 (710)
T TIGR03796 576 W-DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII 654 (710)
T ss_pred C-CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHH
Confidence 9 468999999999999999999999999999999984 8999999999999999999999999999999999999999
Q ss_pred hhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHH
Q 005467 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 627 ~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
.+.|.+. ++|+|+||||+++++.||+|+|||+|+|+|.|+|+||++++|.|++||
T Consensus 655 ~~~l~~~------~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 655 DDNLRRR------GCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred HHHHHhc------CCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 9999752 589999999999999999999999999999999999999999999998
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-97 Score=857.31 Aligned_cols=561 Identities=24% Similarity=0.312 Sum_probs=480.2
Q ss_pred HHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhccc-ccceE--EEeec--chhhhHHHHhhhcccccccce
Q 005467 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAM--VFHKS--SRFLVLLCVTSGIFSGLRSGC 194 (695)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~-~~~~~--~~~~~--~~~l~~~~i~~~i~~~l~~~~ 194 (695)
+++++++++++++.+++++++.++++++.+..|++++..++... ..... .+... ...+.++.++.+++.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 4 LLPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999998888889999999999999998888887432 11100 00000 111222334556677778888
Q ss_pred echhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccch
Q 005467 195 FSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT 274 (695)
Q Consensus 195 ~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~ 274 (695)
...++.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++...+..++..++..++++++|+++||+++
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999988888888888888899999999999999
Q ss_pred hhHHHHHHHHHHH-HHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccc
Q 005467 275 LSALLICSFLSII-VSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMA 353 (695)
Q Consensus 275 li~l~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 353 (695)
+++++++|++.++ ..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..+++.+...+..+.
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888876553 466667777778888888999999999999999999999999999999999999998888776655
Q ss_pred cccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhhe-eeeeeecccchhHHHHhhcchhhHHHhhccCC
Q 005467 354 YGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWL-IYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (695)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l-~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~ 432 (695)
.+.......++..+..++++++|+++ ..|.+++|.++++..|.... ..|+..+...+..++++..+.+|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55444444445445556667788887 48999999999988775443 34556677778888999999999999999876
Q ss_pred cccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 433 SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 433 ~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
+..+++.. ...+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 323 ~~~~~~~~-~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~ 400 (574)
T PRK11160 323 EVTFPTTS-TAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLN 400 (574)
T ss_pred CCCCCccc-CCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 53322111 112234679999999999753 2479999999999999999999999999999999999999999999999
Q ss_pred CccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCC
Q 005467 513 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSG 590 (695)
Q Consensus 513 G~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSG 590 (695)
|+|+++++.+++|++|+||+||++||++||+|||++++ +++++|++++|++.+++++||++ |+||||.+||+ +|||
T Consensus 401 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSg 478 (574)
T PRK11160 401 GQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAA-PNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSG 478 (574)
T ss_pred CEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCC-CccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCH
Confidence 99999999999999999999999999999999999994 68999999999999999999999 99999999995 8999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEe
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 670 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~ 670 (695)
|||||||||||+++||+|||||||||+||++||+.|+++|.+.. +++|+|+||||+++++.||+|++|++|+++|.
T Consensus 479 GqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~----~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~ 554 (574)
T PRK11160 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA----QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQ 554 (574)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecChhHHHhCCEEEEEeCCeEEEe
Confidence 99999999999999999999999999999999999999999873 46999999999999999999999999999999
Q ss_pred ccchhhhhcCchhHHHHhh
Q 005467 671 GNHAELLHKGRLYAKLVKR 689 (695)
Q Consensus 671 Gth~eLl~~~g~Y~~l~~~ 689 (695)
|+|+||++++|.|+++|+.
T Consensus 555 g~~~~l~~~~g~y~~l~~~ 573 (574)
T PRK11160 555 GTHQELLAQQGRYYQLKQR 573 (574)
T ss_pred CCHHHHHhcCcHHHHHHhh
Confidence 9999999999999999974
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-97 Score=872.62 Aligned_cols=553 Identities=26% Similarity=0.349 Sum_probs=483.4
Q ss_pred HHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhccccc-ceEEEeecchhhhHHHHhhhcccccccceech
Q 005467 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (695)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~ 197 (695)
.+++++++++++++.+...++++++..++.++.|++++..+|..... +...+......++++.++.+++.+++.++..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 134 PKHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888889998888888888888888999999998888754321 11101001111122333455677888888889
Q ss_pred hhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhH
Q 005467 198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (695)
Q Consensus 198 ~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~ 277 (695)
.+.++..++|..+|+|++++|++| +++++|++++|+ +|++.+++++...+...+.+++..++++++|++++|++++++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 291 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVP 291 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999998 788999999999 799999999888877778888888888888999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccc
Q 005467 278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 357 (695)
Q Consensus 278 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (695)
++.+|+++++..++.++.++..++..+..++.++.+.|+++|+++||.||.|+.+.++|++..++..+...+..+.....
T Consensus 292 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (694)
T TIGR03375 292 LVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLA 371 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888899999999999999999999999999999999999998888877766555544
Q ss_pred eeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccc
Q 005467 358 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 437 (695)
Q Consensus 358 ~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~ 437 (695)
......+..+..++++++|++++.+|++|+|++++|..|...+..|+..+.+.+..+.++..+.+|+.++++.+++....
T Consensus 372 ~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~ 451 (694)
T TIGR03375 372 TNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG 451 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 44444555556677788999999999999999999999999999999999999999999999999999999987653321
Q ss_pred ccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC
Q 005467 438 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517 (695)
Q Consensus 438 ~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~ 517 (695)
......+...+.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|++
T Consensus 452 ~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~ 530 (694)
T TIGR03375 452 TRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIR 530 (694)
T ss_pred CCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhh
Confidence 1111112345689999999999753 357999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchh
Q 005467 518 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQR 595 (695)
Q Consensus 518 ~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQR 595 (695)
+++.+++|++|+|||||+++|+|||+|||+++ ++++++||+++|++.++++|+|+++|+||||.+||+ +||||||||
T Consensus 531 ~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~-~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQR 609 (694)
T TIGR03375 531 QIDPADLRRNIGYVPQDPRLFYGTLRDNIALG-APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQA 609 (694)
T ss_pred hCCHHHHHhccEEECCChhhhhhhHHHHHhCC-CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999 468999999999999999999999999999999995 899999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchh
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~e 675 (695)
|+||||++++|+|||||||||+||++||+.|+++|.+.. +++|+|+||||+++++.||+|+||++|+|+|+|+|+|
T Consensus 610 lalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~----~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~e 685 (694)
T TIGR03375 610 VALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL----AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQ 685 (694)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh----CCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 999999999999999999999999999999999999874 4699999999999999999999999999999999999
Q ss_pred hhhc
Q 005467 676 LLHK 679 (695)
Q Consensus 676 Ll~~ 679 (695)
|+++
T Consensus 686 Ll~~ 689 (694)
T TIGR03375 686 VLEA 689 (694)
T ss_pred HHHH
Confidence 9875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-97 Score=853.58 Aligned_cols=570 Identities=31% Similarity=0.473 Sum_probs=491.3
Q ss_pred hHHHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeec-chhhhHHHHhhhcccccccc
Q 005467 115 TVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKS-SRFLVLLCVTSGIFSGLRSG 193 (695)
Q Consensus 115 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~-~~~l~~~~i~~~i~~~l~~~ 193 (695)
+.|+.+++++++++++++.++..+++.++.+++....|++++..++.....+....... ...++++.++..++.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 87 (582)
T PRK11176 8 STWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSY 87 (582)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666788889999998887777777777777777788877777764332111100000 11111233344556677777
Q ss_pred eechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccc
Q 005467 194 CFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPL 273 (695)
Q Consensus 194 ~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l 273 (695)
...+++.++..++|..+|+++.+.|+.+|++.++|++++|+++|++.+++.+...+..++..++.++++++++++++|++
T Consensus 88 ~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 167 (582)
T PRK11176 88 CISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788889999999999999999999999999999999999999999999888888888999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccc
Q 005467 274 TLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMA 353 (695)
Q Consensus 274 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 353 (695)
++++++.+|+++++..++.++.++..++.++..++.++.+.|.++|+++||.||.|+.+.++|++..+++.+...+..+.
T Consensus 168 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T PRK11176 168 SLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888888888888888999999999999999999999999999999999999998888776554
Q ss_pred cccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCc
Q 005467 354 YGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS 433 (695)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~ 433 (695)
.........++..+..++++++|++.+..|++|+|+++++..+...+..|+..+++.+..+.++..+.+|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 327 (582)
T PRK11176 248 SSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 44444444444445556677888999999999999999999999999999999999999999999999999999987654
Q ss_pred ccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC
Q 005467 434 NQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (695)
Q Consensus 434 ~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG 513 (695)
.+. +....++..++|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 328 ~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g 404 (582)
T PRK11176 328 KDE--GKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG 404 (582)
T ss_pred CCC--CCcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECC
Confidence 321 111122334579999999999864 35799999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCc
Q 005467 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGG 591 (695)
Q Consensus 514 ~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGG 591 (695)
+|+++++.+++|++|+|||||+++|++||+|||++|++++++||++++|++.+++++++++||+||||.+||+ +||||
T Consensus 405 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred EEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 9999999999999999999999999999999999995335899999999999999999999999999999994 89999
Q ss_pred cchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEec
Q 005467 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 592 QkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~G 671 (695)
|||||+||||++++|+|||||||||+||++||+.|.++|.+.. +++|+|+||||+++++.||+|++||+|+|+|+|
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~----~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g 560 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ----KNRTSLVIAHRLSTIEKADEILVVEDGEIVERG 560 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh----CCCEEEEEecchHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999873 459999999999999999999999999999999
Q ss_pred cchhhhhcCchhHHHHhhhc
Q 005467 672 NHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 672 th~eLl~~~g~Y~~l~~~q~ 691 (695)
+|+||+++++.|+++|..|.
T Consensus 561 ~~~~l~~~~~~y~~l~~~~~ 580 (582)
T PRK11176 561 THAELLAQNGVYAQLHKMQF 580 (582)
T ss_pred CHHHHHhCCChHHHHHHHHh
Confidence 99999999999999998775
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-95 Score=784.28 Aligned_cols=567 Identities=28% Similarity=0.386 Sum_probs=469.2
Q ss_pred HHHHHHHHHHhcc----ceEEEeh-hHHHHHHHHhhccchhhHHHHhhhcccccc--eEEEe---ecchhhhHHHHhhhc
Q 005467 117 WIALSRMWNLIGR----DKWIVLV-AVASLIVAAVSEITMPRILAEAVFSAQREE--AMVFH---KSSRFLVLLCVTSGI 186 (695)
Q Consensus 117 ~~~~~~l~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~--~~~~~---~~~~~l~~~~i~~~i 186 (695)
+..++.+..|.+| +.+.+.+ ++++++.+-+.+...|+++...++.....+ ...+. ..+..+.+.-+.+++
T Consensus 10 ~~~~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~ 89 (591)
T KOG0057|consen 10 LKILRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSV 89 (591)
T ss_pred hHHHHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHH
Confidence 3456666666544 3333333 334444446788889999988887653111 11111 111122233455667
Q ss_pred ccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHH
Q 005467 187 FSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL 266 (695)
Q Consensus 187 ~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l 266 (695)
++.++...+..+.+++.++.-.++|++++++++++|.+..+|++.+.+..-...++.++...+..++..++.+......+
T Consensus 90 F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l 169 (591)
T KOG0057|consen 90 FNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGIL 169 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889899999999999999999999999999999999999999999999888898887766666666554443333222
Q ss_pred -HHhhccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhc
Q 005467 267 -LTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAF 345 (695)
Q Consensus 267 -~~~sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~ 345 (695)
.......+++++.....+...+....+++.+..++.+++.....+.+.|++.|.++||+||.|++|.++|.....++.+
T Consensus 170 ~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~ 249 (591)
T KOG0057|consen 170 YYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYER 249 (591)
T ss_pred HHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 2355666677666666666666666677777888888888899999999999999999999999999999999999999
Q ss_pred chhhhccccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHH
Q 005467 346 IRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVF 425 (695)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~ 425 (695)
.+.+.....+..+.....++......+.+.|..-+.+|++|+|+++....+..+|-.|+..++..+..+.+++..++.++
T Consensus 250 ~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~ 329 (591)
T KOG0057|consen 250 AGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLF 329 (591)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88876655555555555555444455556666678889999999999999999999999999999999999998888888
Q ss_pred HhhccCCcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC
Q 005467 426 QLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (695)
Q Consensus 426 ~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~ 505 (695)
...+...++.+. ..++...++.|+|+||+|+|+. ++++|+++||+|++||+|||||+|||||||++++|+|||+ +
T Consensus 330 ~l~~~~~~i~~~--~~~i~~~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~ 404 (591)
T KOG0057|consen 330 ILLEVDEDIQEA--ALPIELFGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y 404 (591)
T ss_pred hhhhhhhhhhhc--cCCcccCCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c
Confidence 766544333321 1223335678999999999974 3569999999999999999999999999999999999999 9
Q ss_pred CceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc
Q 005467 506 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 585 (695)
Q Consensus 506 ~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge 585 (695)
+|+|+|||+|+++++++++|+.|||||||..||++||.+||.||+ +++++||+.++||.+++||-|.+||+||+|.|||
T Consensus 405 sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn-~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 405 SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGN-PSASDEEVVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred CCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCC-CCcCHHHHHHHHHHcCcHHHHHhccccchhhHhh
Confidence 999999999999999999999999999999999999999999995 7999999999999999999999999999999999
Q ss_pred c--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEee
Q 005467 586 D--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 663 (695)
Q Consensus 586 ~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~ 663 (695)
+ .||||||||++||||++|||||+++|||||+||++||+.+.+.+... ..+||+|+|+||++++++||+|++||
T Consensus 484 rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~----~~~rTvI~IvH~l~ll~~~DkI~~l~ 559 (591)
T KOG0057|consen 484 RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV----MSGRTVIMIVHRLDLLKDFDKIIVLD 559 (591)
T ss_pred cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh----cCCCeEEEEEecchhHhcCCEEEEEE
Confidence 6 89999999999999999999999999999999999999999999885 56799999999999999999999999
Q ss_pred CCeEEEeccchhhhhcCchhHHHHhhhccc
Q 005467 664 DGRIIEVGNHAELLHKGRLYAKLVKRQTES 693 (695)
Q Consensus 664 ~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~ 693 (695)
||+++|+|+|+||+++.+.|+++|..|...
T Consensus 560 nG~v~e~gth~ell~~s~~~~~~w~~~~~~ 589 (591)
T KOG0057|consen 560 NGTVKEYGTHSELLAPSELYADLWTTQTSS 589 (591)
T ss_pred CCeeEEeccHHHHhhhhhHHHHHhcccccc
Confidence 999999999999999999999999988754
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-95 Score=761.33 Aligned_cols=492 Identities=33% Similarity=0.479 Sum_probs=440.4
Q ss_pred ccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhH-HHHh
Q 005467 191 RSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFIN-LLTL 269 (695)
Q Consensus 191 ~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~-l~~~ 269 (695)
|..++..+++.....+--..|.|+.++++.|+.++++|.+..-+......++......+..++..++-+....++ ...+
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 455677888888999999999999999999999999999988887777777777666666666666655555544 4569
Q ss_pred hccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhh
Q 005467 270 SWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIR 349 (695)
Q Consensus 270 sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 349 (695)
+||.++++++++.++.++......++-...++.+++.+..+....+++-+.++||.||.|+.+..+|.+..+.+.+...+
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 99999999999888888777666666677778888888999999999999999999999999999999999999998888
Q ss_pred hccccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhc
Q 005467 350 ESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 429 (695)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~ 429 (695)
.....++.+.....++.....++...++..+..|++|+|+++....|+.++..|+..++..+.++.++...+|+++++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 66555555444455555555566677888889999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccc-cccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCce
Q 005467 430 LLPSNQFLSEGVKLQ-RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (695)
Q Consensus 430 ~~~~~~~~~~~~~~~-~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~ 508 (695)
.+.+..+.++..+.. -..|.|.|+||+|.|..+ .++|+|+||++++|+++|||||||+||||+++||.||||+++|.
T Consensus 242 ~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 242 VEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred cchhhccCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 988776655444443 345789999999999754 68999999999999999999999999999999999999999999
Q ss_pred EEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--
Q 005467 509 IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD-- 586 (695)
Q Consensus 509 I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~-- 586 (695)
|.+||+|+++.+.+++|+.||+||||+.||++||..||+|| ++++++||++.|++.|++|+||.++|+||||.|||+
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~yg-r~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYG-RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhcc-CccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 99999999999999999999999999999999999999999 579999999999999999999999999999999996
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCe
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~ 666 (695)
.||||||||+||||++||+|+||+|||||||||+.||++||.+|++.. +|||+++|||||||+-+||.|+||+||+
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~----~~rttlviahrlsti~~adeiivl~~g~ 474 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS----AGRTTLVIAHRLSTIIDADEIIVLDNGR 474 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh----CCCeEEEEeehhhhccCCceEEEeeCCE
Confidence 899999999999999999999999999999999999999999999984 5699999999999999999999999999
Q ss_pred EEEeccchhhhhcCchhHHHHhh
Q 005467 667 IIEVGNHAELLHKGRLYAKLVKR 689 (695)
Q Consensus 667 Ive~Gth~eLl~~~g~Y~~l~~~ 689 (695)
|+|+|+|+||++++|.|++||.+
T Consensus 475 i~erg~h~~ll~~~g~ya~mw~~ 497 (497)
T COG5265 475 IVERGTHEELLAAGGLYAEMWRR 497 (497)
T ss_pred EEecCcHHHHHHcCChHHHHhcC
Confidence 99999999999999999999964
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-95 Score=855.42 Aligned_cols=564 Identities=28% Similarity=0.373 Sum_probs=492.1
Q ss_pred HHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhccccc-ceEEEeecchhhhHHHHhhhcccccccceechh
Q 005467 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA 198 (695)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~ 198 (695)
++|++++++++++.+...+++.++..++.++.|+++...+|..... +...+......++++.++..++.+++.++....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHL 206 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888888888899999988888754321 111111111112223344556778888889999
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHH
Q 005467 199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278 (695)
Q Consensus 199 ~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l 278 (695)
+.++..++|.++|+|++++|+.||+++++|++++|+ +|++.+++++...+..++.+++..+++++++++++|+++++++
T Consensus 207 ~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 285 (694)
T TIGR01846 207 TSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVI 285 (694)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 6999999988877777777777777778889999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccce
Q 005467 279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 358 (695)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (695)
+++|+++++..++.+..++..++..+..++.++.+.|+++|+++||++|.|+.+.++|++..++..+...+..+......
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (694)
T TIGR01846 286 GSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAG 365 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888887777777777778888999999999999999999999999999999999998888777655544444
Q ss_pred eehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccc
Q 005467 359 MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 438 (695)
Q Consensus 359 ~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~ 438 (695)
....++..+..++++++|++++.+|++|+|++++|..+...+..|+..+++.+..++++..+.+|+.++++.+++....
T Consensus 366 ~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~- 444 (694)
T TIGR01846 366 QAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA- 444 (694)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-
Confidence 4444555566677888999999999999999999999999999999999999999999999999999999877653221
Q ss_pred cccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc
Q 005467 439 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (695)
Q Consensus 439 ~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~ 518 (695)
.....+...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+++
T Consensus 445 ~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~ 523 (694)
T TIGR01846 445 GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAI 523 (694)
T ss_pred CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhh
Confidence 111122335689999999999753 2469999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhH
Q 005467 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRI 596 (695)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRI 596 (695)
++.+++|++|+||+||+++|++||+|||++++ ++++++++++|++.++++++|+++|+||||.+||+ +|||||||||
T Consensus 524 ~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 524 ADPAWLRRQMGVVLQENVLFSRSIRDNIALCN-PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred CCHHHHHHhCeEEccCCeehhhhHHHHHhcCC-CCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999994 68999999999999999999999999999999984 8999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eL 676 (695)
+||||++++|+|||||||||+||+++|+.+.+.|++.. +++|+|+||||+++++.||+|++|++|+|+|+|+|+||
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRNMREIC----RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh----CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999873 46999999999999999999999999999999999999
Q ss_pred hhcCchhHHHHhhhc
Q 005467 677 LHKGRLYAKLVKRQT 691 (695)
Q Consensus 677 l~~~g~Y~~l~~~q~ 691 (695)
++++|.|++||+.|.
T Consensus 679 ~~~~~~y~~l~~~~~ 693 (694)
T TIGR01846 679 LALQGLYARLWQQQS 693 (694)
T ss_pred HHcCChHHHHHHhhc
Confidence 999999999998874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-95 Score=839.04 Aligned_cols=564 Identities=27% Similarity=0.361 Sum_probs=477.5
Q ss_pred HHHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccc-cceEEEeecchh---hhHHHHhhhcccccc
Q 005467 116 VWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRF---LVLLCVTSGIFSGLR 191 (695)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~-~~~~~~~~~~~~---l~~~~i~~~i~~~l~ 191 (695)
.|+.+++++.|.+++++.++..+++.++.++..+..|++++..++.... .+... .....+ ++++.++..++.+++
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 85 (592)
T PRK10790 7 LWPTLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLAAGLHYAQ 85 (592)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888888888888999998888875432 11111 000001 111222344566777
Q ss_pred cceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhc
Q 005467 192 SGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW 271 (695)
Q Consensus 192 ~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw 271 (695)
.+....+..++..++|.++|++++++|+++|++.++|++++|+++|++.+++.+...+..++..++.++++++++++++|
T Consensus 86 ~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (592)
T PRK10790 86 SLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDW 165 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888889999999999999999999999999999999999999999999988888888888888888888999999
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhc
Q 005467 272 PLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES 351 (695)
Q Consensus 272 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 351 (695)
+++++.++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|++..++|.+..++..+...+..
T Consensus 166 ~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (592)
T PRK10790 166 RMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTL 245 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888887777777777777777777778889999999999999999999999999999998887777665543
Q ss_pred cccccc-eeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhcc
Q 005467 352 MAYGLW-NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 430 (695)
Q Consensus 352 ~~~~~~-~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~ 430 (695)
+..+.. .....++..+..++++++++. +..|.+++|.+++++.|...+..|+..++..+..+.++..+.+|+.++++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~ 324 (592)
T PRK10790 246 RLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDG 324 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 332221 111222222222223333344 678999999999999999999999999999999999999999999999987
Q ss_pred CCcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEE
Q 005467 431 LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510 (695)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~ 510 (695)
++++... ...+...++|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 325 ~~~~~~~---~~~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 325 PRQQYGN---DDRPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred CCccCCC---CccCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 6542211 1112234679999999999843 4799999999999999999999999999999999999999999999
Q ss_pred EcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--cc
Q 005467 511 IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LL 588 (695)
Q Consensus 511 idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~L 588 (695)
+||+|+++++.+++|++|+|||||++||++||+|||++| . +++|+++++|++.+|++++|++||+||||.+||+ +|
T Consensus 400 idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~-~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~L 477 (592)
T PRK10790 400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLG-R-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477 (592)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhC-C-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 999999999999999999999999999999999999999 4 6899999999999999999999999999999985 89
Q ss_pred CCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEE
Q 005467 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 668 (695)
Q Consensus 589 SGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Iv 668 (695)
||||||||+||||+++||+|||||||||+||++||+.|++.|.+.. +++|+|+||||+++++.||+|++||+|+|+
T Consensus 478 SGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~----~~~tvIivtHr~~~l~~~D~ii~l~~G~i~ 553 (592)
T PRK10790 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR----EHTTLVVIAHRLSTIVEADTILVLHRGQAV 553 (592)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----CCCEEEEEecchHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999874 358999999999999999999999999999
Q ss_pred EeccchhhhhcCchhHHHHhhhcc
Q 005467 669 EVGNHAELLHKGRLYAKLVKRQTE 692 (695)
Q Consensus 669 e~Gth~eLl~~~g~Y~~l~~~q~~ 692 (695)
|.|+|+||+++++.|+++++.|..
T Consensus 554 ~~G~~~~L~~~~~~y~~l~~~~~~ 577 (592)
T PRK10790 554 EQGTHQQLLAAQGRYWQMYQLQLA 577 (592)
T ss_pred EEcCHHHHHhCCCHHHHHHHHHhh
Confidence 999999999999999999998753
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-93 Score=823.46 Aligned_cols=563 Identities=26% Similarity=0.374 Sum_probs=474.3
Q ss_pred HHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcc----ccccc
Q 005467 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIF----SGLRS 192 (695)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~----~~l~~ 192 (695)
++.++++++++++++..+++.+++.++..++.+..|++++..+|...... ....+++++++..++ .++..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 77 (588)
T PRK13657 4 FRLYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG------DIFPLLAAWAGFGLFNIIAGVLVA 77 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888888899998888887543211 111111111111222 22222
Q ss_pred ceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhcc
Q 005467 193 GCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP 272 (695)
Q Consensus 193 ~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~ 272 (695)
+.......++..+++.++|+|++++|+.+|++.++|++++|+++|++.+.+.+...+..++..++..++.+++++.++|+
T Consensus 78 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (588)
T PRK13657 78 RHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWR 157 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333444455556679999999999999999999999999999999998877777777777777777778888999999
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcc
Q 005467 273 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 352 (695)
Q Consensus 273 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 352 (695)
++++++++.|+++++...+.++.++..++.++..++.++.+.|.++|+++||.||.++.+.++|++..++..+...+...
T Consensus 158 l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (588)
T PRK13657 158 LSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLS 237 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888888888889999999999999999999999999999999999888887666544
Q ss_pred ccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCC
Q 005467 353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (695)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~ 432 (695)
..........++..+..++++++|++++.+|++|+|+++++..|...+..|+..+...+..+..+..+.+|+.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~ 317 (588)
T PRK13657 238 WWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVP 317 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 44333333334444455667788999999999999999999999999999999999889999999999999999998755
Q ss_pred cccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 433 SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 433 ~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
+.+............+.|+|+||+|+|+++ +++|+|+||+++|||++||||+||||||||+|+|+|+|+|++|+|++|
T Consensus 318 ~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~ 395 (588)
T PRK13657 318 DVRDPPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID 395 (588)
T ss_pred ccCCCCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence 432211111112234579999999999853 469999999999999999999999999999999999999999999999
Q ss_pred CccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCC
Q 005467 513 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSG 590 (695)
Q Consensus 513 G~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSG 590 (695)
|+|+++++.+++|++|+|||||++||+|||+|||++++ ++++||++++|++.+++++++.++|+|+||.+||+ +|||
T Consensus 396 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~-~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSg 474 (588)
T PRK13657 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR-PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSG 474 (588)
T ss_pred CEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCC-CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999994 68999999999999999999999999999999984 8999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEe
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 670 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~ 670 (695)
|||||||||||++++|+|||||||||+||+++|+.|++.|++.. +++|+|+||||++.++.||+|++|++|+++|.
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~----~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~ 550 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM----KGRTTFIIAHRLSTVRNADRILVFDNGRVVES 550 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh----cCCEEEEEEecHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999998873 45999999999999999999999999999999
Q ss_pred ccchhhhhcCchhHHHHhhhcc
Q 005467 671 GNHAELLHKGRLYAKLVKRQTE 692 (695)
Q Consensus 671 Gth~eLl~~~g~Y~~l~~~q~~ 692 (695)
|+|+||+++++.|++++..|..
T Consensus 551 g~~~~l~~~~~~y~~l~~~~~~ 572 (588)
T PRK13657 551 GSFDELVARGGRFAALLRAQGM 572 (588)
T ss_pred CCHHHHHHCCChHHHHHHHhhc
Confidence 9999999999999999987643
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-93 Score=821.17 Aligned_cols=564 Identities=34% Similarity=0.513 Sum_probs=493.4
Q ss_pred HHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceE-EEeecchhhhHHHHhhhcccccccceechhh
Q 005467 121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAM-VFHKSSRFLVLLCVTSGIFSGLRSGCFSIAN 199 (695)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~-~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~ 199 (695)
++++++++++++.+++++++.++.+++....|++++..++........ .+.....+++++.++.+++.+++.+.....+
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 3 RRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888888888888898888777643321111 0111111222344455667788888888899
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHH
Q 005467 200 IVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALL 279 (695)
Q Consensus 200 ~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~ 279 (695)
.++..++|..+|+++++.|.++|++.++|++++|+++|++.+++++...+..++.+++.++++++++++++|++++++++
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~ 162 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVV 162 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcccccccee
Q 005467 280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM 359 (695)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (695)
++|+++++..++.++.++..++.++..++.++.+.|.++|+++||.+|.++...++|++..++..+...+..+..+....
T Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (571)
T TIGR02203 163 MLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSP 242 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888889999999999999999999999999999999999999999888877776555544444
Q ss_pred ehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccccc
Q 005467 360 SFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 439 (695)
Q Consensus 360 ~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~ 439 (695)
....+..+..++++++|++++..|.+|+|.++++..+...+..|+..+.+.+..+.++..+.+|+.++++.+++.+...
T Consensus 243 ~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~- 321 (571)
T TIGR02203 243 ITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT- 321 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-
Confidence 4444445556677889999999999999999999999999999999999999999999999999999998766533211
Q ss_pred ccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc
Q 005467 440 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (695)
Q Consensus 440 ~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i 519 (695)
....+..++|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|++++
T Consensus 322 -~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~ 399 (571)
T TIGR02203 322 -RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADY 399 (571)
T ss_pred -CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhc
Confidence 1112234679999999999764 35799999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHH
Q 005467 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIA 597 (695)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIa 597 (695)
+.+++|++|+||||||+||+|||+|||++++++++++++++++++.+++++++.+||+||||.+||+ +||||||||||
T Consensus 400 ~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRia 479 (571)
T TIGR02203 400 TLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLA 479 (571)
T ss_pred CHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 9999999999999999999999999999995337999999999999999999999999999999984 89999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||++++|+||+||||||+||+++|+.|++.|.+.. +++|+|+||||++.++.||+|++|++|++++.|+|+|++
T Consensus 480 LARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~----~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 480 IARALLKDAPILILDEATSALDNESERLVQAALERLM----QGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh----CCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999999999999999998874 459999999999999999999999999999999999999
Q ss_pred hcCchhHHHHhhhc
Q 005467 678 HKGRLYAKLVKRQT 691 (695)
Q Consensus 678 ~~~g~Y~~l~~~q~ 691 (695)
++++.|++++..|.
T Consensus 556 ~~~~~~~~~~~~~~ 569 (571)
T TIGR02203 556 ARNGLYAQLHNMQF 569 (571)
T ss_pred HcCCHHHHHHHHhh
Confidence 99999999998764
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-93 Score=820.21 Aligned_cols=562 Identities=26% Similarity=0.358 Sum_probs=478.6
Q ss_pred HHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccccccc---
Q 005467 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSG--- 193 (695)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~--- 193 (695)
+..++|+++|++++|+.++..+++.++..+..++.|++++..+|.....+. ...+.++.++..++.++..+
T Consensus 4 ~~~~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 77 (585)
T TIGR01192 4 FQVYVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD------VLPTLALWAGFGVFNTIAYVLVA 77 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999988888888899999999999999988875432211 11111111112223333333
Q ss_pred -eechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhcc
Q 005467 194 -CFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP 272 (695)
Q Consensus 194 -~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~ 272 (695)
....+..++..++|.++|++++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++++++|+.++|+
T Consensus 78 ~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (585)
T TIGR01192 78 READRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWR 157 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555667779999999999999999999999999999999999988877777777777777788889999999
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcc
Q 005467 273 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 352 (695)
Q Consensus 273 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 352 (695)
+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+||.|+.+.++|++..+++.+...+..+
T Consensus 158 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (585)
T TIGR01192 158 LSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLD 237 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888888999999999999999999999999999999999888777666544
Q ss_pred ccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCC
Q 005467 353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (695)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~ 432 (695)
..+........+..+..++++++|++++.+|++|+|+++++..|...+..|+..+++.+..+..+..+.+|+.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~ 317 (585)
T TIGR01192 238 WWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVF 317 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 44333333334444555667888999999999999999999999999999999999999999999999999999998765
Q ss_pred cccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 433 SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 433 ~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
+..+.......+...+.|+|+||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 318 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 395 (585)
T TIGR01192 318 QREEPADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILID 395 (585)
T ss_pred cccCCccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEEC
Confidence 432211111112234579999999999753 369999999999999999999999999999999999999999999999
Q ss_pred CccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCC
Q 005467 513 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSG 590 (695)
Q Consensus 513 G~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSG 590 (695)
|+|+++++.+++|++++||+||+++|++||+|||+++. ++++++++++|++.+++++++.++|+||||.+||+ +|||
T Consensus 396 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 396 GIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGR-EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999994 67899999999999999999999999999999984 8999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEe
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 670 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~ 670 (695)
||||||+||||++++|++||||||||+||+++|+.+.+.|++.. +++|+|+||||+++++.||+|++|++|+++|.
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~----~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~ 550 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR----KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEK 550 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh----CCCEEEEEEcChHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999998873 46999999999999999999999999999999
Q ss_pred ccchhhhhcCchhHHHHhhhc
Q 005467 671 GNHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 671 Gth~eLl~~~g~Y~~l~~~q~ 691 (695)
|+|+||++++|.|+++|..|.
T Consensus 551 g~~~~l~~~~~~y~~l~~~~~ 571 (585)
T TIGR01192 551 GSFQELIQKDGRFYKLLRRSG 571 (585)
T ss_pred CCHHHHHHCCChHHHHHHhCc
Confidence 999999999999999998874
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-93 Score=812.45 Aligned_cols=520 Identities=25% Similarity=0.284 Sum_probs=441.6
Q ss_pred HHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhh---HHHHhhhcccccccceech
Q 005467 121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLV---LLCVTSGIFSGLRSGCFSI 197 (695)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~---~~~i~~~i~~~l~~~~~~~ 197 (695)
++++++++++++.++..+++.++.+++.+..|++++..++.....+. .+. ....++ ++.++..++.+++.++...
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (529)
T TIGR02868 2 LRILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLY-LSVAAVAVRAFGIGRAVFRYLERLVGHD 79 (529)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888889999998888875432211 100 000111 1233345566777777778
Q ss_pred hhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhH
Q 005467 198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (695)
Q Consensus 198 ~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~ 277 (695)
...++..++|.++|+|++++|..+|++.++|++++|+++|++.+++.+...+..++..++.++++++++++++|++++++
T Consensus 80 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 159 (529)
T TIGR02868 80 AALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVL 159 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 88899999999999999999999999999999999999999999999988888888888888888999999999999999
Q ss_pred HHHHHHHHHHHHH-HhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcccccc
Q 005467 278 LLICSFLSIIVSV-YGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL 356 (695)
Q Consensus 278 l~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (695)
++++|++.++... ..+..++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+..+..+.
T Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02868 160 AAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGL 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777665543 344445566667777889999999999999999999999999999999999988887776655544
Q ss_pred ceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccc
Q 005467 357 WNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQF 436 (695)
Q Consensus 357 ~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~ 436 (695)
......++..+..++++++|++++.+|++|+|.++++..|...+..|+..+.+.+..+.++..+.+|+.++++.+++..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 319 (529)
T TIGR02868 240 GAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPE 319 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCC
Confidence 44444444445556667889999999999999999999999999999988998899999999999999999987765322
Q ss_pred ccc--ccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCc
Q 005467 437 LSE--GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF 514 (695)
Q Consensus 437 ~~~--~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~ 514 (695)
.+. .....+..++|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+
T Consensus 320 ~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~ 397 (529)
T TIGR02868 320 GVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGV 397 (529)
T ss_pred CCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 111 11111234579999999999853 36999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCcc
Q 005467 515 PLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQ 592 (695)
Q Consensus 515 di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQ 592 (695)
|++++ .+++|++||||||||+||+|||+|||+|| .++++|||+++|++.|+++|||++||+||||.|||+ +|||||
T Consensus 398 ~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g-~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ 475 (529)
T TIGR02868 398 SVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLG-RPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGE 475 (529)
T ss_pred EhhhH-HHHHHhheEEEccCcccccccHHHHHhcc-CCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHH
Confidence 99999 99999999999999999999999999999 478999999999999999999999999999999995 899999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 650 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl 650 (695)
|||||||||+++||+|||||||||+||++||+.|++++.+. .+++|+|+||||+
T Consensus 476 rQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~----~~~~TvIiItHrl 529 (529)
T TIGR02868 476 RQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAA----LSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh----cCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999987 3569999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-92 Score=771.00 Aligned_cols=508 Identities=27% Similarity=0.376 Sum_probs=453.7
Q ss_pred hhHHHHhhhcccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHh
Q 005467 177 LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNS 256 (695)
Q Consensus 177 l~~~~i~~~i~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~ 256 (695)
+++..++.+++.+.+.....+.+.++...+|..+++|+.++++.+-.+.++|++.+.+...+++++.+++..++.++...
T Consensus 46 l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ 125 (559)
T COG4988 46 LLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSA 125 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhhHHHHhhccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhH
Q 005467 257 LQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY 336 (695)
Q Consensus 257 ~~~v~~~i~l~~~sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~ 336 (695)
+..+..+++++++||.-++|.++++|++.+.+...+...++..+++.+....+++.+.|.++|+.|+|.||+.+...++.
T Consensus 126 ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i 205 (559)
T COG4988 126 IVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERI 205 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhhhccccccceeehhhhhhhheehheeecceeeec-cccChhhhhhhhhhhhheeeeeeecccchhHHH
Q 005467 337 KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLL 415 (695)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~-g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~ 415 (695)
.+..+++++..++.-+..-.......++.+++.+++.++.+...+. |++|......++.+.--++.|+..++..|+.-+
T Consensus 206 ~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~ 285 (559)
T COG4988 206 RKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAA 285 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 9999999998877543222222334555555555444444444445 899998888888888889999999999999999
Q ss_pred HhhcchhhHHHhhccCCccccccccccc-ccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhH
Q 005467 416 QSIGATEKVFQLIDLLPSNQFLSEGVKL-QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF 494 (695)
Q Consensus 416 ~~~~a~~rl~~~l~~~~~~~~~~~~~~~-~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL 494 (695)
++.++.++++.+++.+++.......... .....+|+++|++|+||+. +++++|+||+++||+++||||+||||||||
T Consensus 286 ~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTL 363 (559)
T COG4988 286 AGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTL 363 (559)
T ss_pred hhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHH
Confidence 9999999999999987754322211111 1122346667999999864 379999999999999999999999999999
Q ss_pred HHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhc
Q 005467 495 VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 574 (695)
Q Consensus 495 l~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~ 574 (695)
+++|+||++|++|+|++||+|+++++.++||+++++|+|+|+||+|||||||+++ +++++||++++|++.+++.||+..
T Consensus 364 l~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~-~~~~s~e~i~~al~~a~l~~~v~~ 442 (559)
T COG4988 364 LNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLA-RPDASDEEIIAALDQAGLLEFVPK 442 (559)
T ss_pred HHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhcc-CCcCCHHHHHHHHHHhcHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999 578999999999999999999999
Q ss_pred CCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc
Q 005467 575 LPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 652 (695)
Q Consensus 575 LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst 652 (695)
|+|+||.+||+ +|||||+||+|+|||+++++++++||||||+||.|||+.|+++|.++.+ +||||+||||+..
T Consensus 443 -p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~----~ktvl~itHrl~~ 517 (559)
T COG4988 443 -PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK----QKTVLVITHRLED 517 (559)
T ss_pred -CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh----CCeEEEEEcChHH
Confidence 99999999995 8999999999999999999999999999999999999999999999954 5999999999999
Q ss_pred ccccCeEEEeeCCeEEEeccchhhhhcCchhHHHHhhhcc
Q 005467 653 IKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 692 (695)
Q Consensus 653 i~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~ 692 (695)
+++||+|+|||+|+++|.|+|+||++++|.|++|++.|.+
T Consensus 518 ~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~~ 557 (559)
T COG4988 518 AADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557 (559)
T ss_pred HhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998864
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-92 Score=810.82 Aligned_cols=568 Identities=35% Similarity=0.537 Sum_probs=484.9
Q ss_pred HHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhccc-ccceEEEeecchhhhHHHHhhhcccccccceech
Q 005467 119 ALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (695)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~ 197 (695)
.+++++++++++++.+.+.+++.++..+..+..|+++..+++... ..+...+.....+++++.++..++.+++.+....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 5 PLAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888999998888887532 1111111111111222223334455667777778
Q ss_pred hhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhH
Q 005467 198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (695)
Q Consensus 198 ~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~ 277 (695)
++.++..++|..+|++++++|.++|++.+.|++++|+++|++.+++++...+..++..++.+++++++++.++|++++++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 88999999999999999999999999999999999999999999998888888888888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccc
Q 005467 278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 357 (695)
Q Consensus 278 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (695)
++..|+++++..++.++.++..++.++..++..+.+.|.++|+++||.++.|+.+.++|++..++..+...+........
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALL 244 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888777878888888888888888999999999999999999999999999999998888777665554433333
Q ss_pred eeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccc
Q 005467 358 NMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL 437 (695)
Q Consensus 358 ~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~ 437 (695)
.....++.....++++++|++++.+|.+|+|+++++..|...+..|+..+.+.+..+..+..+.+|+.++++.+++.+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 324 (576)
T TIGR02204 245 TAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAP 324 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Confidence 32223333344456677899999999999999999999999999999999999999999999999999999876542211
Q ss_pred ccccc-cccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC
Q 005467 438 SEGVK-LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516 (695)
Q Consensus 438 ~~~~~-~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di 516 (695)
..... ..+..+.|+|+||+|+|++++++++|+|+||+|+|||++||+||||||||||+|+|+|+|+|++|+|++||+|+
T Consensus 325 ~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i 404 (576)
T TIGR02204 325 AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL 404 (576)
T ss_pred CCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEH
Confidence 11111 11224579999999999864335799999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccch
Q 005467 517 TDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQ 594 (695)
Q Consensus 517 ~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQ 594 (695)
++++.+++|++|+|||||+++|++||+|||++++ ++.++++++++++.++++++++++|+|+||.+||+ +|||||||
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~-~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLFAASVMENIRYGR-PDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HhcCHHHHHHhceEEccCCccccccHHHHHhcCC-CCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 9999999999999999999999999999999994 67889999999999999999999999999999984 89999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccch
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~ 674 (695)
||+||||++++|+|||||||||+||+++|+.|.+.|.+.. +++|+|+||||++.++.||+|++|++|+++|.|+|+
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~----~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~ 559 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM----KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHA 559 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh----CCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHH
Confidence 9999999999999999999999999999999999999874 469999999999999999999999999999999999
Q ss_pred hhhhcCchhHHHHhhhc
Q 005467 675 ELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 675 eLl~~~g~Y~~l~~~q~ 691 (695)
||+++++.|++|++.|.
T Consensus 560 ~l~~~~~~~~~l~~~~~ 576 (576)
T TIGR02204 560 ELIAKGGLYARLARLQF 576 (576)
T ss_pred HHHHcCChHHHHHhhcC
Confidence 99999999999998773
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-91 Score=753.17 Aligned_cols=552 Identities=24% Similarity=0.305 Sum_probs=452.8
Q ss_pred ceEEEehhHHHHHHHHhhccchhhHHHHhhhcc-cccceEEEeecch--hhhHHHHhhhcccccccceechhhhHHHHHH
Q 005467 130 DKWIVLVAVASLIVAAVSEITMPRILAEAVFSA-QREEAMVFHKSSR--FLVLLCVTSGIFSGLRSGCFSIANIVLVKRL 206 (695)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~-~~~~~~~~~~~~~--~l~~~~i~~~i~~~l~~~~~~~~~~~~~~~l 206 (695)
+|+.+.+++++.+++.++++.+-.+-+..+... ..+....+.-..+ .+=++.+...+..|...+..+.+..++..++
T Consensus 14 ~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~l 93 (573)
T COG4987 14 HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLSAL 93 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 677778888888888777666554434433211 1111000100000 0112445556667777778888889999999
Q ss_pred HHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHH-HH
Q 005467 207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSF-LS 285 (695)
Q Consensus 207 r~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l-~~ 285 (695)
|.++|+++...+..-..+.++||+++|+..|++.+++++-..+.+.+..++...+..+.+.++||++++...+.+.+ .+
T Consensus 94 Rv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~ll 173 (573)
T COG4987 94 RVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLL 173 (573)
T ss_pred HHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999989888888888777777888889999988775554443 44
Q ss_pred HHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhh
Q 005467 286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY 365 (695)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 365 (695)
++..++.++.++..+...+.++.+.+.+.|.+.|..+.+.||+++...+.+.+....+.+...+.+...++......++.
T Consensus 174 i~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~ 253 (573)
T COG4987 174 IIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIA 253 (573)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788888888888999999999999999999999999999999999888888888887766655554444444
Q ss_pred hhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecc-cchhHHHHhhcchhhHHHhhccCCcccccccccccc
Q 005467 366 RSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMV-DNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQ 444 (695)
Q Consensus 366 ~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~ 444 (695)
.+..+..+++.+..+-.|..+.....++++.....+.++..+. ..+..+.+...|+.|+.++++.+|+...+.+ ..+
T Consensus 254 g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~--~~~ 331 (573)
T COG4987 254 GLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDE--QTA 331 (573)
T ss_pred HHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCcc--ccC
Confidence 4333323333444555677665444444444444555555555 5667888999999999999999887654311 112
Q ss_pred cccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH
Q 005467 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l 524 (695)
.....++++||||+||+++ .++|+|+||++++||++||+|+|||||||++++|.|-|+|++|+|+++|.++..++.+.+
T Consensus 332 ~~~~~l~~~~vsF~y~~~~-~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~ 410 (573)
T COG4987 332 TTGQALELRNVSFTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQAL 410 (573)
T ss_pred CccceeeeccceeecCCCc-cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhH
Confidence 2222699999999999864 589999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHh
Q 005467 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAI 602 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAl 602 (695)
|+.|++++|.+|||++|+|||++++ ++++||||+++|++++|+++++++.|+||+|++||+ +||||||||+||||++
T Consensus 411 ~e~i~vl~Qr~hlF~~Tlr~NL~lA-~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~L 489 (573)
T COG4987 411 RETISVLTQRVHLFSGTLRDNLRLA-NPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARAL 489 (573)
T ss_pred HHHHhhhccchHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHH
Confidence 9999999999999999999999999 579999999999999999999999999999999994 9999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCch
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRL 682 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~ 682 (695)
++|+|++||||||.+||++||+.|++.|.+. .+|||+|+||||+..++.||||+|||+|+|+|+|+|+||++++|.
T Consensus 490 L~dapl~lLDEPTegLD~~TE~~vL~ll~~~----~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~ 565 (573)
T COG4987 490 LHDAPLWLLDEPTEGLDPITERQVLALLFEH----AEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGR 565 (573)
T ss_pred HcCCCeEEecCCcccCChhhHHHHHHHHHHH----hcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccH
Confidence 9999999999999999999999999999988 456999999999999999999999999999999999999999999
Q ss_pred hHHHHhh
Q 005467 683 YAKLVKR 689 (695)
Q Consensus 683 Y~~l~~~ 689 (695)
|+++++.
T Consensus 566 ~~~l~q~ 572 (573)
T COG4987 566 YKRLYQL 572 (573)
T ss_pred HHHHhcc
Confidence 9999864
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-91 Score=803.86 Aligned_cols=543 Identities=28% Similarity=0.424 Sum_probs=460.1
Q ss_pred HHHHHhhccchhhHHHHhhhcccccceEE--EeecchhhhHHHHhhhcccccccceechhhhHHHHHHHHHHHHhhhccc
Q 005467 141 LIVAAVSEITMPRILAEAVFSAQREEAMV--FHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQD 218 (695)
Q Consensus 141 ~~~~~~~~~~~P~~~~~~i~~~~~~~~~~--~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~ 218 (695)
.++.++..++.|++++..++......... +.....++++..++..++.+++.++....+.++..++|.++|++++++|
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34555566678888888887543211110 0000111122223344556666777777889999999999999999999
Q ss_pred cccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHH-HHhhccchhhHHHHHHHHHHHHHHHhhhhhh
Q 005467 219 VYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL-LTLSWPLTLSALLICSFLSIIVSVYGQYQKR 297 (695)
Q Consensus 219 ~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l-~~~sw~l~li~l~~~~l~~~~~~~~~~~~~~ 297 (695)
+++|++.++|++++|+++|++.++..+...+..++..++..+++++++ +.++|++++++++++|+++++...+.++.++
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999877666777776655555555555 5799999999999999988888888888888
Q ss_pred hhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhhhhheehheeecc
Q 005467 298 ASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGG 377 (695)
Q Consensus 298 ~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~ 377 (695)
..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+..+..+........+..+..++++++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999999999998888877765544444333333333444566678899
Q ss_pred eeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccccccccccccceEEEEEEee
Q 005467 378 MSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISF 457 (695)
Q Consensus 378 ~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF 457 (695)
+++.+|++|+|+++++..|...+..|+..+++.+..+.++..+.+|+.++++.+++....+ ...+...+.|+|+||+|
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~--~~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS--EPVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC--CCCCCCCCcEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999998765432111 11122346799999999
Q ss_pred ecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCcee
Q 005467 458 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL 537 (695)
Q Consensus 458 ~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~L 537 (695)
+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|+++|
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99853 35799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccc
Q 005467 538 LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEAT 615 (695)
Q Consensus 538 F~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaT 615 (695)
|++||+|||++++ ++++++++++|++.+++++++.++|+||||.+||+ +|||||||||+||||++++|+||||||||
T Consensus 401 f~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 401 FSDTVANNIALGR-PDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred ccccHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 9999999999994 68899999999999999999999999999999985 89999999999999999999999999999
Q ss_pred cccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHHhhhc
Q 005467 616 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 616 SaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 691 (695)
|+||+++|+.|.+.|++.. +++|+|+||||+++++.||+|++|++|+++|+|+|+||++++|.|+++|+.|.
T Consensus 480 s~LD~~~~~~i~~~l~~~~----~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 551 (569)
T PRK10789 480 SAVDGRTEHQILHNLRQWG----EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQ 551 (569)
T ss_pred ccCCHHHHHHHHHHHHHHh----CCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhh
Confidence 9999999999999998873 46999999999999999999999999999999999999999999999998764
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-91 Score=870.45 Aligned_cols=558 Identities=22% Similarity=0.289 Sum_probs=453.5
Q ss_pred HHHHHhccceEEEe-hhHHHHHHHHhhccchhhHHHHhhhccc-ccceEEEeecchhhhHHHHhhhcccccccceechhh
Q 005467 122 RMWNLIGRDKWIVL-VAVASLIVAAVSEITMPRILAEAVFSAQ-REEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIAN 199 (695)
Q Consensus 122 ~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~P~~~~~~i~~~~-~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~ 199 (695)
.++.|++...+... ..+++.++..++.+..|++++...+... ..+.........++.++.++.+++.+++.++....+
T Consensus 954 ~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~ 1033 (1522)
T TIGR00957 954 VYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGG 1033 (1522)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554322222 2223334444555666777776654321 111010111122334445555566667777777888
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHH
Q 005467 200 IVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALL 279 (695)
Q Consensus 200 ~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~ 279 (695)
.+...++|.++|++++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|++++++++
T Consensus 1034 ~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~ 1113 (1522)
T TIGR00957 1034 IQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPP 1113 (1522)
T ss_pred HHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888888888888888888888887777666
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcccccccee
Q 005467 280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM 359 (695)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (695)
++++++++..++.+..++..+...+..+...+.+.|+++|+++||+||.|+++.+++.+..+...+..........+...
T Consensus 1114 ~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1193 (1522)
T TIGR00957 1114 LGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAV 1193 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777777777777777778889999999999999999999999998888888777766654443222222222
Q ss_pred ehhhhhhhheehheeecceeee-ccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccc-
Q 005467 360 SFITLYRSTQVMAVLLGGMSIM-IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFL- 437 (695)
Q Consensus 360 ~~~~l~~~~~~~~l~~g~~~v~-~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~- 437 (695)
...++. .+++++++++.+. .|.+++|.+++++.|...+..|+..+...+..+.++..|++|+.++++.+++....
T Consensus 1194 ~~~~~~---~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~ 1270 (1522)
T TIGR00957 1194 RLECVG---NCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQI 1270 (1522)
T ss_pred HHHHHH---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 222221 1223334444443 57899999999999999999999999999999999999999999999877654311
Q ss_pred ccccc--cccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc
Q 005467 438 SEGVK--LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (695)
Q Consensus 438 ~~~~~--~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d 515 (695)
+.... ..+..|+|+|+||+|+|+++. ++||+||||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||+|
T Consensus 1271 ~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1271 QETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLN 1349 (1522)
T ss_pred cCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEE
Confidence 11111 124568899999999997543 479999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccc
Q 005467 516 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 593 (695)
Q Consensus 516 i~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQk 593 (695)
+++++.+++|++|++|||||+||+|||||||... .+++|||+++|++.|+++|||.++|+||||.|||+ +||||||
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~--~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF--SQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCccHHHHcCcc--cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence 9999999999999999999999999999999854 26899999999999999999999999999999994 9999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth 673 (695)
||||||||++|+|+|||||||||+||++||+.|+++|++.+ +++|+|+||||++++.+||||+|||+|+|+|.|+|
T Consensus 1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~----~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~ 1503 (1522)
T TIGR00957 1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF----EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAP 1503 (1522)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999874 45999999999999999999999999999999999
Q ss_pred hhhhhcCchhHHHHhh
Q 005467 674 AELLHKGRLYAKLVKR 689 (695)
Q Consensus 674 ~eLl~~~g~Y~~l~~~ 689 (695)
+||++++|.|++|++.
T Consensus 1504 ~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1504 SNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred HHHHhCCCHHHHHHHH
Confidence 9999999999999976
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-89 Score=850.76 Aligned_cols=567 Identities=28% Similarity=0.419 Sum_probs=481.7
Q ss_pred HHHHHHHh-ccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccccccceechh
Q 005467 120 LSRMWNLI-GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA 198 (695)
Q Consensus 120 ~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~ 198 (695)
+.++++|. +++++.+++++++++++.++..++|.+++.+++.....+ ........++++.++..++.+++.+++.++
T Consensus 47 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 124 (1466)
T PTZ00265 47 FFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE--NVNDIIFSLVLIGIFQFILSFISSFCMDVV 124 (1466)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777 456777777788888888887888888888887532111 111112223344555667788899999999
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHH
Q 005467 199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278 (695)
Q Consensus 199 ~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l 278 (695)
++++..++|.++|++++++|++||+..++|++++|+++|++.+++.+...+..++..++.+++.++++++++|+|+++++
T Consensus 125 ~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l 204 (1466)
T PTZ00265 125 TTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCIT 204 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccce
Q 005467 279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 358 (695)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (695)
+++|+++++..++.++.++..+..++..++.++.+.|.++|+++||+|+.|+.+.++|++..+++.+...+.....+...
T Consensus 205 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~ 284 (1466)
T PTZ00265 205 CVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHI 284 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888999999999999999999999999999999998888888777665555544
Q ss_pred eehhhhhhhheehheeecceeeecc--------ccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhcc
Q 005467 359 MSFITLYRSTQVMAVLLGGMSIMIG--------QVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDL 430 (695)
Q Consensus 359 ~~~~~l~~~~~~~~l~~g~~~v~~g--------~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~ 430 (695)
....++..+..++++|+|++++.+| .+++|.++++..+......++..+...+..++.+..|++|++++++.
T Consensus 285 ~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~ 364 (1466)
T PTZ00265 285 GMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINR 364 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5555555566677889999999875 57888887766554333333333445667888899999999999998
Q ss_pred CCcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEE
Q 005467 431 LPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510 (695)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~ 510 (695)
+|+.+...++...+. .+.|+|+||+|+|+++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 365 ~~~~~~~~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 443 (1466)
T PTZ00265 365 KPLVENNDDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII 443 (1466)
T ss_pred CCCCCCCCCCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEE
Confidence 776432222222222 2479999999999865445799999999999999999999999999999999999999999999
Q ss_pred E-cCccCCcchhHHHHhhhccccCCceeeeeeccccccccCC--------------------------------------
Q 005467 511 I-DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-------------------------------------- 551 (695)
Q Consensus 511 i-dG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-------------------------------------- 551 (695)
+ ||.|+++++.+++|++||||+|+++||++||+|||++|..
T Consensus 444 i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1466)
T PTZ00265 444 INDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLN 523 (1466)
T ss_pred EeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhh
Confidence 9 5799999999999999999999999999999999999731
Q ss_pred ------------------cCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEE
Q 005467 552 ------------------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLL 611 (695)
Q Consensus 552 ------------------~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILIL 611 (695)
++++++++++||+.+++++||.+||+||||.+|++ +|||||||||+||||++++|+||||
T Consensus 524 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlL 603 (1466)
T PTZ00265 524 DMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILIL 603 (1466)
T ss_pred hcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 13567899999999999999999999999999985 8999999999999999999999999
Q ss_pred eccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCC--------------------------
Q 005467 612 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG-------------------------- 665 (695)
Q Consensus 612 DEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G-------------------------- 665 (695)
|||||+||+++|+.|+++|+++.+. +|+|+|+||||+++++.||+|+||++|
T Consensus 604 DEpTSaLD~~se~~i~~~L~~~~~~--~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 681 (1466)
T PTZ00265 604 DEATSSLDNKSEYLVQKTINNLKGN--ENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKN 681 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccc
Confidence 9999999999999999999988531 369999999999999999999999986
Q ss_pred ---------------------eEEEeccchhhhh-cCchhHHHHhhhc
Q 005467 666 ---------------------RIIEVGNHAELLH-KGRLYAKLVKRQT 691 (695)
Q Consensus 666 ---------------------~Ive~Gth~eLl~-~~g~Y~~l~~~q~ 691 (695)
+|+|+|+|+||++ ++|.|+.|++.|.
T Consensus 682 ~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 682 NKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred ccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 5999999999998 6999999998874
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-89 Score=855.51 Aligned_cols=557 Identities=22% Similarity=0.285 Sum_probs=419.7
Q ss_pred HHHHHHhccceEE--EehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccccccceechh
Q 005467 121 SRMWNLIGRDKWI--VLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIA 198 (695)
Q Consensus 121 ~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~ 198 (695)
+.++.|++...+. +++.+++.++..++.+..++++....+........ ......++.++.++..++.+++.+++...
T Consensus 902 ~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~-~~~~~~i~~~l~~~~~i~~~~~~~~~~~~ 980 (1622)
T PLN03130 902 KVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHG-PLFYNLIYALLSFGQVLVTLLNSYWLIMS 980 (1622)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555443222 22223333444455555666666655432111100 01112233344555566777888888888
Q ss_pred hhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHH
Q 005467 199 NIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSAL 278 (695)
Q Consensus 199 ~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l 278 (695)
+.+...++|.++|++++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|...++++
T Consensus 981 ~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~ 1060 (1622)
T PLN03130 981 SLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIM 1060 (1622)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888888888888888888874333322
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccce
Q 005467 279 LICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWN 358 (695)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (695)
.+..+++.+..++.+..++..+...+..+...+++.|+++|+++||+||.++++.+++.+..+...+..........+..
T Consensus 1061 pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~ 1140 (1622)
T PLN03130 1061 PLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLA 1140 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222223334455556666666667778899999999999999999999886665555444433322211110011111
Q ss_pred eehhhhhhhheehheeecceeeecc---------ccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhc
Q 005467 359 MSFITLYRSTQVMAVLLGGMSIMIG---------QVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLID 429 (695)
Q Consensus 359 ~~~~~l~~~~~~~~l~~g~~~v~~g---------~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~ 429 (695)
....++ ..+++++.+.+.+..+ ..++|.++++. ..+..++..+...+..+.++..+++|+.++++
T Consensus 1141 ~~l~~~---~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~---~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~ 1214 (1622)
T PLN03130 1141 IRLETL---GGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYA---LNITSLLTAVLRLASLAENSLNAVERVGTYID 1214 (1622)
T ss_pred HHHHHH---HHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 111111 1111222222223322 13445544443 33444444455666778889999999999998
Q ss_pred cCCccccc-ccc--cccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC
Q 005467 430 LLPSNQFL-SEG--VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (695)
Q Consensus 430 ~~~~~~~~-~~~--~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~ 506 (695)
.++|.+.. ++. ...++..|.|+|+||+|+|+++ .++||+||||+|+|||++||||+||||||||+++|+|+|+|++
T Consensus 1215 ~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~ 1293 (1622)
T PLN03130 1215 LPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293 (1622)
T ss_pred CCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCC
Confidence 87664321 111 1112456789999999999643 2479999999999999999999999999999999999999999
Q ss_pred ceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc
Q 005467 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 586 (695)
Q Consensus 507 G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~ 586 (695)
|+|+|||+|+++++.+++|++|++|||||+||+|||||||.++ + +++|||+++|++.|+++|||+++|+||||.|||+
T Consensus 1294 G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~-~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPF-N-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred ceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcC-C-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 9999999999999999999999999999999999999999998 3 6899999999999999999999999999999995
Q ss_pred --ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 587 --LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 587 --~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
+|||||||||||||||+|+|+|||||||||+||.+||+.|+++|++.+ ++||+|+||||++|+++||||+|||+
T Consensus 1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~----~~~TvI~IAHRL~tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF----KSCTMLIIAHRLNTIIDCDRILVLDA 1447 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC----CCCEEEEEeCChHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999884 45999999999999999999999999
Q ss_pred CeEEEeccchhhhhc-CchhHHHHhhhc
Q 005467 665 GRIIEVGNHAELLHK-GRLYAKLVKRQT 691 (695)
Q Consensus 665 G~Ive~Gth~eLl~~-~g~Y~~l~~~q~ 691 (695)
|+|+|.|+|+||+++ +|.|++|++.+.
T Consensus 1448 G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1448 GRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred CEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 999999999999997 699999998764
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-89 Score=780.88 Aligned_cols=524 Identities=25% Similarity=0.329 Sum_probs=444.1
Q ss_pred eEEEehhHHHHHHHHhhccchhhHHHHhhhccc-ccce-EEEeecchhhhHHHHhhhcccccccceechhhhHHHHHHHH
Q 005467 131 KWIVLVAVASLIVAAVSEITMPRILAEAVFSAQ-REEA-MVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRE 208 (695)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~-~~~~-~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~~~~~lr~ 208 (695)
|+.+..++++.+++++..+..|++++..++... .... ..+.....++.++.++..++.+++.+....++.++..++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788888888889999888887542 2111 00111111122334445667788888888899999999999
Q ss_pred HHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHHHHHH
Q 005467 209 TLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIV 288 (695)
Q Consensus 209 ~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~~~~~ 288 (695)
++|++++++|..+|++.++|++++|+++|++.+++.+...+..++..++..++++++++.++|++++++++++|++.++.
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~ 161 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFM 161 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888888888888888888999999999999998888887777
Q ss_pred HHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhhhhh
Q 005467 289 SVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRST 368 (695)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 368 (695)
.++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..+++.+...+..+..........++..+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02857 162 ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLS 241 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777888888889999999999999999999999999999999988888776665444333333333333334
Q ss_pred eehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccccccccccccc
Q 005467 369 QVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMG 448 (695)
Q Consensus 369 ~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~~~~ 448 (695)
.+++++++++.+..|.+|+|.++++..|...+..|+..++..+..+.++..+.+|+.++++.+++.... ... .....+
T Consensus 242 ~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~-~~~-~~~~~~ 319 (529)
T TIGR02857 242 VALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK-APV-TAAPAP 319 (529)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-cCC-CCCCCC
Confidence 444455677777799999999999999999999999999989999999999999999999855432211 111 111235
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
+|+|+||+|+||+++ +++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||+|+++++.+++|++|
T Consensus 320 ~i~~~~v~f~y~~~~-~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 320 SLEFSGLSVAYPGRR-APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred eEEEEEEEEECCCCC-cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 799999999998642 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCC
Q 005467 529 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 529 ~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p 606 (695)
+||+||+++|++||+|||+++. ++++|+++++|++.+++++||+++|+||||.+||+ +|||||||||+||||+++||
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLAR-PDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999994 68899999999999999999999999999999984 89999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
+|||||||||+||+++|+.|+++|.+.. +++|+|+||||+++++.||+|+||
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l~~~~----~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEALRALA----QGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999873 469999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-88 Score=844.46 Aligned_cols=500 Identities=19% Similarity=0.248 Sum_probs=414.5
Q ss_pred hcccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhh
Q 005467 185 GIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFI 264 (695)
Q Consensus 185 ~i~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i 264 (695)
.++.+++.+.......+...++|.++|++++++|+.||+++++|++++|+++|++.+++.+...+..++..++.+++.++
T Consensus 1012 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li 1091 (1560)
T PTZ00243 1012 TFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSIL 1091 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455566678999999999999999999999999999999999999999998888888888888888888
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhh
Q 005467 265 NLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLA 344 (695)
Q Consensus 265 ~l~~~sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~ 344 (695)
++++.+|.+.++++.+..++..+..++.+..++..+...+..+...+.+.|+++|+++||+||.++.+.++|.+..+...
T Consensus 1092 ~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~ 1171 (1560)
T PTZ00243 1092 VTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVY 1171 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 88888885544433333344444556667777777777788889999999999999999999999999999988888877
Q ss_pred cchhhhccccccceeehhhhhhhheehheeecc--eeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchh
Q 005467 345 FIRIRESMAYGLWNMSFITLYRSTQVMAVLLGG--MSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATE 422 (695)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~--~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ 422 (695)
+..........+......++..+..+++.+++. .....+.+++|.+..++.|...+..++..+...+..+.++..+++
T Consensus 1172 ~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~e 1251 (1560)
T PTZ00243 1172 SCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVE 1251 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765544332222222222222222222222222 223345678998888888888888888888889999999999999
Q ss_pred hHHHhhccCCcccccc-------------------------cc-c----ccccccceEEEEEEeeecCCCCccceeeeee
Q 005467 423 KVFQLIDLLPSNQFLS-------------------------EG-V----KLQRLMGHVQFVNISFHYPSRPTVPILNHVC 472 (695)
Q Consensus 423 rl~~~l~~~~~~~~~~-------------------------~~-~----~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~is 472 (695)
|++++++..|+++.+. .. . +.++..|.|+|+||+|+|+++ .++||+|||
T Consensus 1252 Ri~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vs 1330 (1560)
T PTZ00243 1252 RLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVS 1330 (1560)
T ss_pred HHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecce
Confidence 9999997544321000 00 0 011235789999999999754 246999999
Q ss_pred eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCc
Q 005467 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK 552 (695)
Q Consensus 473 l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~ 552 (695)
|+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++++.+++|++||+|||||+||+|||||||.++ .
T Consensus 1331 f~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~--~ 1408 (1560)
T PTZ00243 1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPF--L 1408 (1560)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcc--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987 3
Q ss_pred CCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcC-CcEEEEeccccccCcccchhhhhH
Q 005467 553 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD-PAILLLDEATSALDSESEHYVKGV 629 (695)
Q Consensus 553 ~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~-p~ILILDEaTSaLD~~tE~~I~~~ 629 (695)
+++|||+++|++.|+++|||.++|+||||.|||+ +|||||||||||||||+++ |+|||||||||+||++||+.|+++
T Consensus 1409 ~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~ 1488 (1560)
T PTZ00243 1409 EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT 1488 (1560)
T ss_pred CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 7899999999999999999999999999999994 9999999999999999995 899999999999999999999999
Q ss_pred HHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc-CchhHHHHhhhc
Q 005467 630 LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAKLVKRQT 691 (695)
Q Consensus 630 L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~-~g~Y~~l~~~q~ 691 (695)
|++.+ +++|+|+||||++++++||+|+|||+|+|+|.|+|+||+++ +|.|++|++.+.
T Consensus 1489 L~~~~----~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1489 VMSAF----SAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred HHHHC----CCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99874 45999999999999999999999999999999999999985 899999998764
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-88 Score=845.15 Aligned_cols=505 Identities=22% Similarity=0.311 Sum_probs=403.0
Q ss_pred hhHHHHhhhcccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHh
Q 005467 177 LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNS 256 (695)
Q Consensus 177 l~~~~i~~~i~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~ 256 (695)
+.++.++..++.+++.+++...+.+...++|.++|++++++|++||+++++|++++|+++|++.+++.+...+..++..+
T Consensus 956 y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~ 1035 (1495)
T PLN03232 956 YALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQL 1035 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Confidence 34445556667778888888899999999999999999999999999999999999999999999999888888888888
Q ss_pred hccchhhhHHHHhhccchhhHHHHHHHHH-HHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhh
Q 005467 257 LQGAGAFINLLTLSWPLTLSALLICSFLS-IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGR 335 (695)
Q Consensus 257 ~~~v~~~i~l~~~sw~l~li~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~ 335 (695)
+..++.+++++.+++.. +++++.+++++ +...++.+..++..+...+..+...+.+.|+++|+++||+||.++++.++
T Consensus 1036 ~~~i~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~ 1114 (1495)
T PLN03232 1036 WQLLSTFALIGTVSTIS-LWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKI 1114 (1495)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHH
Confidence 77777777777777543 32222222222 22334444555566666777888999999999999999999999877666
Q ss_pred HHHHHHHhhcchhhhccccccceeehhhhhhhheehheeecceeee-cccc----C-hhhhhhhhhhhhheeeeeeeccc
Q 005467 336 YKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIM-IGQV----S-PEQLTKYVLYCEWLIYATWRMVD 409 (695)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~-~g~i----s-~G~l~~~~~~~~~l~~~~~~l~~ 409 (695)
+++..+...+..........+....... ...+++++.|.+.+. .|.+ . .+.+..++.|...+..++..+..
T Consensus 1115 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~ 1191 (1495)
T PLN03232 1115 NGKSMDNNIRFTLANTSSNRWLTIRLET---LGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLR 1191 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655554443332211111111100111 111122222222232 2322 1 22233355566667677777778
Q ss_pred chhHHHHhhcchhhHHHhhccCCccccc-ccc--cccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEee
Q 005467 410 NLSSLLQSIGATEKVFQLIDLLPSNQFL-SEG--VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGL 486 (695)
Q Consensus 410 ~~~~~~~~~~a~~rl~~~l~~~~~~~~~-~~~--~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~ 486 (695)
.+..+..+..+++|+.++++.++|.... +.. ...++..|+|+|+||+|+|+++ .++||+|+||+|+|||++||||+
T Consensus 1192 ~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~ 1270 (1495)
T PLN03232 1192 QASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGR 1270 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECC
Confidence 8888999999999999999887764321 111 1112446789999999999643 24799999999999999999999
Q ss_pred cCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHh
Q 005467 487 SGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQA 566 (695)
Q Consensus 487 SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a 566 (695)
||||||||+++|+|+|+|++|+|+|||+|+++++.+++|++|++|||||+||+|||||||.++ + +++|||+++|++.|
T Consensus 1271 SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~-~-~~sdeei~~al~~a 1348 (1495)
T PLN03232 1271 TGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPF-S-EHNDADLWEALERA 1348 (1495)
T ss_pred CCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCC-C-CCCHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999998 3 78999999999999
Q ss_pred hHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEE
Q 005467 567 YVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644 (695)
Q Consensus 567 ~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvI 644 (695)
+++|||+++|+||||.|||+ +|||||||||||||||+|+|+|||||||||+||++||+.|+++|++.. +++|+|
T Consensus 1349 ~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~----~~~TvI 1424 (1495)
T PLN03232 1349 HIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF----KSCTML 1424 (1495)
T ss_pred CCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc----CCCEEE
Confidence 99999999999999999995 999999999999999999999999999999999999999999999874 469999
Q ss_pred EEeeecccccccCeEEEeeCCeEEEeccchhhhhcC-chhHHHHhhhcc
Q 005467 645 VIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG-RLYAKLVKRQTE 692 (695)
Q Consensus 645 iIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~-g~Y~~l~~~q~~ 692 (695)
+||||++|+++||||+|||+|+|+|.|+|+||++++ |.|++|++.+..
T Consensus 1425 ~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1425 VIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred EEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 999999999999999999999999999999999986 599999987753
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-88 Score=771.42 Aligned_cols=538 Identities=24% Similarity=0.303 Sum_probs=449.3
Q ss_pred ccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccc-cceEEEeecchhhhHHHHhhhcccccccceechhhhHHHHHH
Q 005467 128 GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRL 206 (695)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~-~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~~~~~l 206 (695)
+++|+.++..+++.++..+..++.|++++.++|.... .+...+.....+++++.++..++.+++.++....+.++..++
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556667778888888889999999888875431 111101111111222333455667788888888899999999
Q ss_pred HHHHHHhhhccccccccccccccccccccchhhhhhhhhcc-chhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHHH
Q 005467 207 RETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGN-DINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS 285 (695)
Q Consensus 207 r~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~-~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~~ 285 (695)
|.++|+|++++|+. ..++..+++++|++.+++.+.. .+..++..+.. ++.+++++.++|+++++++++.|+++
T Consensus 82 r~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~li~l~~~~l~~ 155 (544)
T TIGR01842 82 NQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWM-PIYLLVCFLLHPWIGILALGGAVVLV 155 (544)
T ss_pred HHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999984 3467788999999999998766 34444444333 34456789999999999988888887
Q ss_pred HHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhh
Q 005467 286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY 365 (695)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 365 (695)
++..++.+..++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+.....+........+.
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (544)
T TIGR01842 156 GLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFR 235 (544)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777778888888999999999999999999999999999999999998887776665444443333333444
Q ss_pred hhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccccccccccc
Q 005467 366 RSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQR 445 (695)
Q Consensus 366 ~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~ 445 (695)
.+..++++++|++++.+|++|+|+++++..|...+..|+..+...+..+.++..+.+|+.++++.+++.... ...+.
T Consensus 236 ~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~ 312 (544)
T TIGR01842 236 IVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA---MPLPE 312 (544)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC---CCCCC
Confidence 444566778899999999999999999999999999999999999999999999999999999876543211 11122
Q ss_pred ccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH
Q 005467 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR 525 (695)
..+.|+++||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|
T Consensus 313 ~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~ 391 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391 (544)
T ss_pred CCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHh
Confidence 34579999999999753 24799999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhh
Q 005467 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAIL 603 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll 603 (695)
++|+|||||+++|++|++|||+++. +++++++++++++.++++++++++|+||||.+||+ +|||||||||+||||++
T Consensus 392 ~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 392 KHIGYLPQDVELFPGTVAENIARFG-ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred hheEEecCCcccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999883 57899999999999999999999999999999994 89999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+||++||||||||+||+++|+.+.+.|.+... +++|+|+||||+++++.||+|++|++|+++|.|+|+||+++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~---~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKA---RGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhh---CCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 99999999999999999999999999988742 36899999999999999999999999999999999999763
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-85 Score=748.12 Aligned_cols=534 Identities=18% Similarity=0.168 Sum_probs=439.0
Q ss_pred HHHHHHHHhc-cceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccccccceech
Q 005467 119 ALSRMWNLIG-RDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (695)
Q Consensus 119 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~ 197 (695)
.+++++++++ ++|+.+++++++.++.++..+..|++++..++...... ......++++.++..++.+++.++...
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG----QGSLFSFGGLCLLALLFRIGADIFPAY 79 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999 99999999998999999998899988887765321110 011122333444555677788888888
Q ss_pred hhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhH
Q 005467 198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (695)
Q Consensus 198 ~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~ 277 (695)
++.++..++|.++|+|++++|+.||++.++|++++|+++|++.+++++.. +..++..++.+++++++|++++|++++++
T Consensus 80 ~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~ 158 (555)
T TIGR01194 80 AGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAIT 158 (555)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998864 66777788888888889999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchh--hhhhhHHHHHHHhhcchhhhccccc
Q 005467 278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEE--KELGRYKIWLEKLAFIRIRESMAYG 355 (695)
Q Consensus 278 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (695)
++.+|+.+++..++.++.++..++.++..++.++.+.|.+.|++++|+||.++ .+.+++++..+++.+...+......
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T TIGR01194 159 ISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFI 238 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 88888877777766666777777788888999999999999999999999954 5577888888887776655433222
Q ss_pred cceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCc--
Q 005467 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS-- 433 (695)
Q Consensus 356 ~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~-- 433 (695)
.......++..+...+.+++|++. |.+|+|++++|++|...+..|+..+++.+..++++..+.+|+.++++.+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~ 315 (555)
T TIGR01194 239 AAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPE 315 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 221222222222222223344332 789999999999999999999999999999999999999999999863211
Q ss_pred cc-cccc-c-c---ccccccceEEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC
Q 005467 434 NQ-FLSE-G-V---KLQRLMGHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (695)
Q Consensus 434 ~~-~~~~-~-~---~~~~~~~~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~ 505 (695)
.. +.++ . . ......++|+|+||+|+|++.+ .+++|+|+||+|++||++|||||||||||||+++|+|+|+|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~ 395 (555)
T TIGR01194 316 PELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395 (555)
T ss_pred ccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 11 0010 0 0 1112235799999999998532 236999999999999999999999999999999999999999
Q ss_pred CceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc
Q 005467 506 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 585 (695)
Q Consensus 506 ~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge 585 (695)
+|+|++||+|+++++.+++|+++++|+||++||++|+++|+ . +++++++++++++.++++++++++|+||||.
T Consensus 396 ~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~--- 468 (555)
T TIGR01194 396 EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--G--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT--- 468 (555)
T ss_pred CcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--c--cchhHHHHHHHHHHcCCchhhcccccccCCc---
Confidence 99999999999999999999999999999999999999995 2 4788999999999999999999999999995
Q ss_pred cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHh-hhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 586 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA-LRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 586 ~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~-~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
.+|||||||||+||||++++|+|||||||||+||+++|+.|++.+.+ .. .+++|+|+||||+++++.||+|+||++
T Consensus 469 ~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~---~~~~tiiiisH~~~~~~~~d~i~~l~~ 545 (555)
T TIGR01194 469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK---RQGKTIIIISHDDQYFELADQIIKLAA 545 (555)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH---hCCCEEEEEeccHHHHHhCCEEEEEEC
Confidence 78999999999999999999999999999999999999999987753 32 246999999999999999999999999
Q ss_pred CeEEEe
Q 005467 665 GRIIEV 670 (695)
Q Consensus 665 G~Ive~ 670 (695)
|+|+|.
T Consensus 546 G~i~~~ 551 (555)
T TIGR01194 546 GCIVKD 551 (555)
T ss_pred CEEEEe
Confidence 999875
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-83 Score=764.34 Aligned_cols=558 Identities=23% Similarity=0.353 Sum_probs=457.7
Q ss_pred HHHHHhcc-ceEEEehh-HHHHHHHHhhccchhhHHHHhhhcccccce--EEEeecchhhhHHHHhhhcccccccceech
Q 005467 122 RMWNLIGR-DKWIVLVA-VASLIVAAVSEITMPRILAEAVFSAQREEA--MVFHKSSRFLVLLCVTSGIFSGLRSGCFSI 197 (695)
Q Consensus 122 ~l~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~--~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~ 197 (695)
-++.|++. ..+..... +++.++...+.+..-+++....+....... ........++.++.++..++..+++..+..
T Consensus 805 vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~ 884 (1381)
T KOG0054|consen 805 VYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAK 884 (1381)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556655 22222221 233444445555555667666654321110 011122344555666677777889999999
Q ss_pred hhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhH
Q 005467 198 ANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (695)
Q Consensus 198 ~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~ 277 (695)
.+.+..+.+...+++++++.|++|||++++|.|++|+++|++.+++.+...+..++..++.+++.++++.+..|+..+++
T Consensus 885 ~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~ 964 (1381)
T KOG0054|consen 885 GGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAI 964 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccc
Q 005467 278 LLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLW 357 (695)
Q Consensus 278 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (695)
+.++.+++.+..+|.+..|+..+.....++...+++.|+++|+.|||+|+.|+++.+++.+..+...+...-......++
T Consensus 965 ~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWl 1044 (1381)
T KOG0054|consen 965 IPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWL 1044 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88888888888899999999999999999999999999999999999999999999999888887766544332222221
Q ss_pred eeehhhhhhhheehheeecceeee--ccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccc
Q 005467 358 NMSFITLYRSTQVMAVLLGGMSIM--IGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435 (695)
Q Consensus 358 ~~~~~~l~~~~~~~~l~~g~~~v~--~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~ 435 (695)
..-...+. .++++..+...++ .+.+++|.+...+.|..++...+..+.+...++...+.|+||+.|+.+.++|.+
T Consensus 1045 a~Rle~ig---~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p 1121 (1381)
T KOG0054|consen 1045 AVRLELLG---NLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAP 1121 (1381)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCC
Confidence 11111111 1111111111121 122678888888889989888888888888999999999999999999776621
Q ss_pred c-ccc--ccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 436 F-LSE--GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 436 ~-~~~--~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
. .++ ..+.+|.+|+|+|+|++.+|..+ .++|||||||+|+|||+|||||++|||||||++.|.|+.+|.+|+|.||
T Consensus 1122 ~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~ID 1200 (1381)
T KOG0054|consen 1122 LEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILID 1200 (1381)
T ss_pred CCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEc
Confidence 1 111 23345788999999999999654 3579999999999999999999999999999999999999999999999
Q ss_pred CccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCC
Q 005467 513 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSG 590 (695)
Q Consensus 513 G~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSG 590 (695)
|+|+.++.+++||++++++||||.||+||+|.||.-- .+.+|+|||+|++.|+++++|.++|+|+|+.|.|+ |+|-
T Consensus 1201 gvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf--~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~Sv 1278 (1381)
T KOG0054|consen 1201 GVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF--DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSV 1278 (1381)
T ss_pred CeecccccHHHHHhcCeeeCCCCceecCccccccCcc--cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCCh
Confidence 9999999999999999999999999999999999855 36899999999999999999999999999999984 9999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEe
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 670 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~ 670 (695)
||||.+||||||||+++|||||||||++|++|+..||++|++.+++ ||||.||||++|+-+||||+|||+|+|+|.
T Consensus 1279 GQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~d----cTVltIAHRl~TVmd~DrVlVld~G~v~Ef 1354 (1381)
T KOG0054|consen 1279 GQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKD----CTVLTIAHRLNTVMDSDRVLVLDAGRVVEF 1354 (1381)
T ss_pred HHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcC----CeEEEEeeccchhhhcCeEEEeeCCeEeec
Confidence 9999999999999999999999999999999999999999998654 899999999999999999999999999999
Q ss_pred ccchhhhhc-CchhHHHHhh
Q 005467 671 GNHAELLHK-GRLYAKLVKR 689 (695)
Q Consensus 671 Gth~eLl~~-~g~Y~~l~~~ 689 (695)
|++++|+++ ++.|+++...
T Consensus 1355 dsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1355 DSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred CChHHHHhCCcchHHHHHHH
Confidence 999999986 7777766543
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-83 Score=800.05 Aligned_cols=495 Identities=19% Similarity=0.264 Sum_probs=408.9
Q ss_pred hcccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhh
Q 005467 185 GIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFI 264 (695)
Q Consensus 185 ~i~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i 264 (695)
.++.+++.+++...+.+...++|.++|+++++.|++||+++++|++++|+++|++.+++.+...+..++..++.+++.++
T Consensus 939 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~ 1018 (1490)
T TIGR01271 939 LALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIF 1018 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888899999999999999999999999999999999999999999999999888888888888888888
Q ss_pred HHHHhhccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhh
Q 005467 265 NLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLA 344 (695)
Q Consensus 265 ~l~~~sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~ 344 (695)
++++++|+++++++.++.+++.+..++.+..++..+...+..+...+.+.|+++|+.+||+||.++.+.+++.+..+...
T Consensus 1019 ~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~ 1098 (1490)
T TIGR01271 1019 VVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHT 1098 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 89999998766555544444555566666667777777777888999999999999999999999999999988887654
Q ss_pred cchhhhccccccceeehhhhhhhh--eehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchh
Q 005467 345 FIRIRESMAYGLWNMSFITLYRST--QVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATE 422 (695)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~ 422 (695)
+..........+......++..+. .+++++++.. .++.|.+..++.|...+..++..+...+..+..+..+++
T Consensus 1099 ~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~e 1173 (1490)
T TIGR01271 1099 ANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVS 1173 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333221111111111111111111 1111222222 234455555555666666666667777888889999999
Q ss_pred hHHHhhccCCcccccccc-----------------cccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEe
Q 005467 423 KVFQLIDLLPSNQFLSEG-----------------VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVG 485 (695)
Q Consensus 423 rl~~~l~~~~~~~~~~~~-----------------~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG 485 (695)
|+.++++.+++....... ...++..|+|+|+||+|+|++. .+++|+||||+|+|||++||||
T Consensus 1174 Ri~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvG 1252 (1490)
T TIGR01271 1174 RVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLG 1252 (1490)
T ss_pred HHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEEC
Confidence 999999876654321110 0012345789999999999753 3579999999999999999999
Q ss_pred ecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHH
Q 005467 486 LSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQ 565 (695)
Q Consensus 486 ~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~ 565 (695)
+||||||||+++|+|+|+ ++|+|+|||+|+++++.+++|++|+||||||+||+|||||||... .+.+|+++++|++.
T Consensus 1253 rSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~--~~~tdeei~~aL~~ 1329 (1490)
T TIGR01271 1253 RTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY--EQWSDEEIWKVAEE 1329 (1490)
T ss_pred CCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc--cCCCHHHHHHHHHH
Confidence 999999999999999997 799999999999999999999999999999999999999999876 26899999999999
Q ss_pred hhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceE
Q 005467 566 AYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV 643 (695)
Q Consensus 566 a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~Tv 643 (695)
++++++|.++|+||||.|||+ +|||||||||||||||+++|+|||||||||+||.+||+.|++.|++.+ +++|+
T Consensus 1330 ~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~----~~~Tv 1405 (1490)
T TIGR01271 1330 VGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF----SNCTV 1405 (1490)
T ss_pred CCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEE
Confidence 999999999999999999985 999999999999999999999999999999999999999999999874 45999
Q ss_pred EEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHHhhhcc
Q 005467 644 IVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 692 (695)
Q Consensus 644 IiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~ 692 (695)
|+||||++++.+||||+|||+|+|+|.|+|+||++++|.|++|++.+.+
T Consensus 1406 I~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1406 ILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADR 1454 (1490)
T ss_pred EEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhCh
Confidence 9999999999999999999999999999999999999999999987653
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-81 Score=665.83 Aligned_cols=540 Identities=24% Similarity=0.334 Sum_probs=453.1
Q ss_pred hccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccc-eEEEeecchhhhHHHHhhhcccccccceechhhhHHHHH
Q 005467 127 IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE-AMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKR 205 (695)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~-~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~~~~~ 205 (695)
+...|..++.+.++..+.-+..+..|.|+-++-|...... ...+.....+...+.++.+++..+|+....+++.++...
T Consensus 18 l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~ 97 (580)
T COG4618 18 LAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQ 97 (580)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443343333444444445667877777665433211 111111111122345566778899999999999999999
Q ss_pred HHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHHH
Q 005467 206 LRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS 285 (695)
Q Consensus 206 lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~~ 285 (695)
++..+|....+.+.. .+..|+=.+-+ +|.++++.|++..-...+-+.=..-+++.+.|.+++++++++++++.+++
T Consensus 98 L~~~v~~a~~~~~l~---~~~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv 173 (580)
T COG4618 98 LNGPVFAASFSAPLL---RRGSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILV 173 (580)
T ss_pred hccHHHHHHHhhHHh---hcCCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999877653 45677777777 69999999887644433334433445666778899999999999999988
Q ss_pred HHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhh
Q 005467 286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY 365 (695)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 365 (695)
.+..+.....++..++..+...+.+..+.-+.+|.++|++.|......++|.+....+...+.+.+-..+.+....-.+-
T Consensus 174 ~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~R 253 (580)
T COG4618 174 VLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALR 253 (580)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88888888888888888888999999999999999999999999999999999998888777665444444444444455
Q ss_pred hhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccccccccccc
Q 005467 366 RSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQR 445 (695)
Q Consensus 366 ~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~ 445 (695)
...+..++.+|+|+|+.|++|.|.+++-..+......|+......|.++..+..|.+|+.+++...|+.. .....|.
T Consensus 254 m~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~---~~m~LP~ 330 (580)
T COG4618 254 MALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA---ERMPLPA 330 (580)
T ss_pred HHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc---CCCCCCC
Confidence 5678889999999999999999999999989999999999988999999999999999999999877643 2345566
Q ss_pred ccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH
Q 005467 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR 525 (695)
.++.+.+|+|+|.-|+. ++|+|+|+||+++|||.+|||||||||||||.++|.|.++|.+|.|++||.|++.+|.+.+-
T Consensus 331 P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG 409 (580)
T COG4618 331 PQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLG 409 (580)
T ss_pred CCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhc
Confidence 67899999999988875 47999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCceeeeeecccccc-ccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHh
Q 005467 526 EKIGFVGQEPQLLQMDIKSNIM-YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAI 602 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~TI~eNI~-~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAl 602 (695)
++|||.|||..||+|||+|||+ |+ +++++|.|.+|++.|+.||.|.+||+||||.|||+ .|||||||||++|||+
T Consensus 410 ~hiGYLPQdVeLF~GTIaeNIaRf~--~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 410 RHIGYLPQDVELFDGTIAENIARFG--EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARAL 487 (580)
T ss_pred cccCcCcccceecCCcHHHHHHhcc--ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHH
Confidence 9999999999999999999995 55 58899999999999999999999999999999995 8999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|.||.++|||||-|+||.+-|+.+.++|.+.++ +|.|+|+||||+|.+..+|+|+||++|++...|+-+|.+++
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~---rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA---RGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH---cCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999999999999999999874 58999999999999999999999999999999999999875
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-78 Score=759.71 Aligned_cols=533 Identities=20% Similarity=0.229 Sum_probs=413.5
Q ss_pred ceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccccc--cce--echhhhHHHHH
Q 005467 130 DKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLR--SGC--FSIANIVLVKR 205 (695)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l~--~~~--~~~~~~~~~~~ 205 (695)
+++.++...++.++..++.++.|+++...++.....+.. . ....+.++.++..++..+. .+. ..+++.++...
T Consensus 299 ~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~-~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 375 (1495)
T PLN03232 299 LGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPA-W--VGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRST 375 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666667788888888999998888654322211 1 1111211111111111111 111 23566677777
Q ss_pred HHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHH--
Q 005467 206 LRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSF-- 283 (695)
Q Consensus 206 lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l-- 283 (695)
++..+|+|+++++..++++.++|++++|+++|++++++++ ..+..++...+.++++++++ .+.+++.+++++++
T Consensus 376 l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l---~~~lg~~~l~~~~v~~ 451 (1495)
T PLN03232 376 LVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLL---YQQLGVASLFGSLILF 451 (1495)
T ss_pred HHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999976 45555555554444444333 23344443333322
Q ss_pred -HHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehh
Q 005467 284 -LSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFI 362 (695)
Q Consensus 284 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (695)
+..+..++.++.++.+++.++..++..+.+.|.++|+++||.||+|+.+.+++++..++..+...+.............
T Consensus 452 l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~ 531 (1495)
T PLN03232 452 LLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILN 531 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223455667777888888888899999999999999999999999999999988777666655544332221111111
Q ss_pred hhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccccccc
Q 005467 363 TLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVK 442 (695)
Q Consensus 363 ~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~ 442 (695)
.. ...+.++.+|++.+..|.+|+|.+++++.+...+..|+..++..+..+.++..+.+|+.++++.+++..... ..
T Consensus 532 ~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~--~~ 607 (1495)
T PLN03232 532 SI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN--PP 607 (1495)
T ss_pred HH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc--CC
Confidence 11 111223567888888999999999999999999999998899899999999999999999998765422111 11
Q ss_pred cccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH
Q 005467 443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 522 (695)
Q Consensus 443 ~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~ 522 (695)
.....+.|+|+||+|+|++++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|.+.
T Consensus 608 ~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------ 675 (1495)
T PLN03232 608 LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------ 675 (1495)
T ss_pred cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------
Confidence 11123469999999999864446799999999999999999999999999999999999999999873
Q ss_pred HHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHH
Q 005467 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIAR 600 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIAR 600 (695)
.+|++|+||+|+|+||++||||||++|. +.++|++++|++.|+++++++.||+|+||.|||+ +|||||||||||||
T Consensus 676 ~~~~~Iayv~Q~p~Lf~gTIreNI~fg~--~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLAR 753 (1495)
T PLN03232 676 VIRGSVAYVPQVSWIFNATVRENILFGS--DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMAR 753 (1495)
T ss_pred EecCcEEEEcCccccccccHHHHhhcCC--ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHH
Confidence 4678999999999999999999999994 4789999999999999999999999999999995 99999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhH-HHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~-L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|+|++|+|+||||||||||+++|+.|.+. +... .++||+|+||||+++++.||+|++|++|+|+|+|+|+||+++
T Consensus 754 Aly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~----l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~ 829 (1495)
T PLN03232 754 AVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE----LKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829 (1495)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh----hcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc
Confidence 99999999999999999999999988665 4443 356999999999999999999999999999999999999999
Q ss_pred CchhHHHHhhhc
Q 005467 680 GRLYAKLVKRQT 691 (695)
Q Consensus 680 ~g~Y~~l~~~q~ 691 (695)
++.|+++++.+.
T Consensus 830 ~~~~~~l~~~~~ 841 (1495)
T PLN03232 830 GSLFKKLMENAG 841 (1495)
T ss_pred chhHHHHHHhcc
Confidence 999999987653
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-77 Score=687.41 Aligned_cols=533 Identities=19% Similarity=0.165 Sum_probs=408.9
Q ss_pred HHHHhccceEEEehhHHHHHHHHhhccch-hhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccccccceechhhhH
Q 005467 123 MWNLIGRDKWIVLVAVASLIVAAVSEITM-PRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIV 201 (695)
Q Consensus 123 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~ 201 (695)
+++|++++++.++..+++.++.++..+.. |++.+..++.... + . .....+.++.++..++.+++.+....++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (547)
T PRK10522 4 LRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-S---L-LVLPEFLGLLLLLMAVTLGSQLALTTLGHH 78 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-c---c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888887764 5555666654321 1 0 011111222233344556777788888999
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHH
Q 005467 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLIC 281 (695)
Q Consensus 202 ~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~ 281 (695)
+..++|.++|++++++|+++|+++++|++++|+++|++.+...+. .+..++..++.+++++++|++++|++++++++++
T Consensus 79 ~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~ 157 (547)
T PRK10522 79 FVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWM 157 (547)
T ss_pred HHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998665 4667788888888888999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecch---hhhhhhHHHHHHHhhcchhhhccccccce
Q 005467 282 SFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTE---EKELGRYKIWLEKLAFIRIRESMAYGLWN 358 (695)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (695)
|+++++..++.++.++..++.++..++.++.+.|.++|+++++ ++.+ +...+++++..++..+...+.........
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (547)
T PRK10522 158 AVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAV 236 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 9888888878788888888888889999999999999999996 4444 34567788777777665544332221111
Q ss_pred eehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccc
Q 005467 359 MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 438 (695)
Q Consensus 359 ~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~ 438 (695)
.....+..+...+.+++++.. +..+.+.++.+..+...+..|+..++..+..++++..+.+|+.++++.+++.+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~- 312 (547)
T PRK10522 237 NWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP- 312 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-
Confidence 111111111111112222211 1123333444444444456788888888899999999999999997654332111
Q ss_pred cccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc
Q 005467 439 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (695)
Q Consensus 439 ~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~ 518 (695)
+.... +..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++
T Consensus 313 ~~~~~-~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 389 (547)
T PRK10522 313 RPQAF-PDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA 389 (547)
T ss_pred ccccc-CcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCC
Confidence 11111 113579999999999853 469999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
++.+++|++|+||+||+++|++|++|| + +++++++++++++.+++++++. +|+|. +++.+|||||||||+|
T Consensus 390 ~~~~~~~~~i~~v~q~~~lf~~ti~~n---~--~~~~~~~~~~~~~~~~l~~~~~-~~~~~---~~G~~LSgGq~qRl~l 460 (547)
T PRK10522 390 EQPEDYRKLFSAVFTDFHLFDQLLGPE---G--KPANPALVEKWLERLKMAHKLE-LEDGR---ISNLKLSKGQKKRLAL 460 (547)
T ss_pred CCHHHHhhheEEEecChhHHHHhhccc---c--CchHHHHHHHHHHHcCCchhhh-ccccC---CCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999 4 3678888988888888887765 35553 2345899999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEe-ccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV-GNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~-Gth~eLl 677 (695)
|||+++||++||||||||+||+++|+.+.+.+.+..+ .+++|+|+||||+++++.||+|++|++|+++|. |+|.+-.
T Consensus 461 ARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~--~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~~~~ 538 (547)
T PRK10522 461 LLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQ--EMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDAA 538 (547)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH--hCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCchhhh
Confidence 9999999999999999999999999999999876532 136899999999999999999999999999987 6766655
Q ss_pred hcC
Q 005467 678 HKG 680 (695)
Q Consensus 678 ~~~ 680 (695)
.++
T Consensus 539 ~~~ 541 (547)
T PRK10522 539 SRD 541 (547)
T ss_pred hhh
Confidence 544
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-77 Score=750.53 Aligned_cols=534 Identities=18% Similarity=0.229 Sum_probs=411.1
Q ss_pred ccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccc--cccce--echhhhHHH
Q 005467 128 GRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSG--LRSGC--FSIANIVLV 203 (695)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~--l~~~~--~~~~~~~~~ 203 (695)
+.+++.++..+++.++..++.++.|+++...++.....+.. .. ..++.++.++..++.. ...+. ...++.++.
T Consensus 297 ~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir 373 (1622)
T PLN03130 297 NSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA-WI--GYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLR 373 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666777788888888999988887654322211 11 1111111111111111 11111 235666777
Q ss_pred HHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHH
Q 005467 204 KRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSF 283 (695)
Q Consensus 204 ~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l 283 (695)
..++..+|+|+++++..++++.++|++++++++|++++++++ ..+..++...+.+++++++++..-.+.+++.++++.+
T Consensus 374 ~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l 452 (1622)
T PLN03130 374 STLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVL 452 (1622)
T ss_pred HHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999999999999999999999999999987 4456666666655555554443222222222222223
Q ss_pred HHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhh
Q 005467 284 LSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFIT 363 (695)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (695)
++.+..++.++.++.+++..+..++..+.+.|.++|+++||.||+|+.+.+++.+..++..+...+....... ..+
T Consensus 453 ~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~----~~~ 528 (1622)
T PLN03130 453 MFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAF----NSF 528 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 3334455666777777778888889999999999999999999999999888887766655444433222211 111
Q ss_pred hhhhh--eehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccccccc
Q 005467 364 LYRST--QVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGV 441 (695)
Q Consensus 364 l~~~~--~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~ 441 (695)
+.... .+.++.+|++.+..|.+|+|.+++++.+...+..|+..++..+..+.++.++++|+.++++.++...... .
T Consensus 529 ~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~-~- 606 (1622)
T PLN03130 529 ILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN-P- 606 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC-C-
Confidence 11111 2344567888888999999999999999999999998888889999999999999999997654321111 1
Q ss_pred ccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC-ceEEEcCccCCcch
Q 005467 442 KLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLD 520 (695)
Q Consensus 442 ~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~-G~I~idG~di~~i~ 520 (695)
...+..+.|+|+||+|+|++++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++ |+|.+
T Consensus 607 ~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l--------- 677 (1622)
T PLN03130 607 PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI--------- 677 (1622)
T ss_pred cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE---------
Confidence 01112346999999999986444579999999999999999999999999999999999999999 99974
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHH
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAI 598 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaI 598 (695)
|++|+||+|+|+||++||||||+||. ..++|++++|++.|+++++|+.||+|++|.|||+ +|||||||||||
T Consensus 678 ----~~~Iayv~Q~p~LfngTIreNI~fg~--~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaL 751 (1622)
T PLN03130 678 ----RGTVAYVPQVSWIFNATVRDNILFGS--PFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSM 751 (1622)
T ss_pred ----cCeEEEEcCccccCCCCHHHHHhCCC--cccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHH
Confidence 56899999999999999999999994 3689999999999999999999999999999995 899999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhh-HHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKG-VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~-~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|||+|+||+|+||||||||||+++|+.|.+ .+... .++||+|+||||++.++.||+|++|++|+|+|+|+|+||+
T Consensus 752 ARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~----l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 752 ARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDE----LRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred HHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHH----hcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999998854 45544 3469999999999999999999999999999999999999
Q ss_pred hcCchhHHHHhhh
Q 005467 678 HKGRLYAKLVKRQ 690 (695)
Q Consensus 678 ~~~g~Y~~l~~~q 690 (695)
++++.|+++++.+
T Consensus 828 ~~~~~~~~l~~~~ 840 (1622)
T PLN03130 828 NNGPLFQKLMENA 840 (1622)
T ss_pred hcchhHHHHHHhc
Confidence 9999999998764
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-73 Score=663.92 Aligned_cols=528 Identities=17% Similarity=0.158 Sum_probs=429.4
Q ss_pred HHHHHHHHHHHhccceE-----EEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecch----hhhHHHHhhhc
Q 005467 116 VWIALSRMWNLIGRDKW-----IVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSR----FLVLLCVTSGI 186 (695)
Q Consensus 116 ~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~----~l~~~~i~~~i 186 (695)
.++.++++++|++||++ .+++.++++++.+++.+..|++.+..++.....+...+..... ++++..++.++
T Consensus 75 ~~~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~ 154 (659)
T TIGR00954 75 FLGKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSA 154 (659)
T ss_pred HHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35557788999999997 4666677788888888999999998887654332111111011 11122333444
Q ss_pred ccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHH
Q 005467 187 FSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINL 266 (695)
Q Consensus 187 ~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l 266 (695)
..+++.++......++..+++...|++....++.|||+ ++|++++|+++|++.+.+.+...+..++..++.++++++.|
T Consensus 155 ~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L 233 (659)
T TIGR00954 155 IKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKL 233 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777778888999999999999999999997 89999999999999999999999999999998888888888
Q ss_pred HH-hhccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhc
Q 005467 267 LT-LSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAF 345 (695)
Q Consensus 267 ~~-~sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~ 345 (695)
+. ++|.+++++++..|+..++..++.++.++..++.++..++.++...|.++|+++||.|+.|+.+.+++++..+++.+
T Consensus 234 ~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~ 313 (659)
T TIGR00954 234 LTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVE 313 (659)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 86 99999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred chhhhccccccceeehhhhhhh-heeh-heeecceee-e----ccccChhhhhh-hhhh---hhheeeeeeecccchhHH
Q 005467 346 IRIRESMAYGLWNMSFITLYRS-TQVM-AVLLGGMSI-M----IGQVSPEQLTK-YVLY---CEWLIYATWRMVDNLSSL 414 (695)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~-~~~~-~l~~g~~~v-~----~g~is~G~l~~-~~~~---~~~l~~~~~~l~~~~~~~ 414 (695)
...+..+....+.....++... ..++ .++.|+..+ . .|.+|.|.+++ |+.| ...+..|+..+++.+..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i 393 (659)
T TIGR00954 314 HLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDM 393 (659)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877665555554444443221 1222 222333222 2 27899998776 6655 456678888899999999
Q ss_pred HHhhcchhhHHHhhccCCccccc----------ccc-------------cccccccceEEEEEEeeecCCCCccceeeee
Q 005467 415 LQSIGATEKVFQLIDLLPSNQFL----------SEG-------------VKLQRLMGHVQFVNISFHYPSRPTVPILNHV 471 (695)
Q Consensus 415 ~~~~~a~~rl~~~l~~~~~~~~~----------~~~-------------~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~i 471 (695)
+++.++.+|++++++.+++..+. ++. .......+.|+++||+|+|+++ +++|+|+
T Consensus 394 ~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~i 471 (659)
T TIGR00954 394 TRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESL 471 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeecc
Confidence 99999999999999864432100 000 0011123569999999999743 3699999
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCC
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP 551 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~ 551 (695)
||+|++||++||+||||||||||+++|+|+|+|++|+|.+|+ |++++||+|++++|++|++|||.++..
T Consensus 472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~ 540 (659)
T TIGR00954 472 SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDS 540 (659)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCC
Confidence 999999999999999999999999999999999999999874 568999999999999999999999731
Q ss_pred ------cCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccch
Q 005467 552 ------KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624 (695)
Q Consensus 552 ------~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~ 624 (695)
++.++++++++++.++++++++. |.||||..++ .+||||||||++||||++++|++||||||||+||+++|+
T Consensus 541 ~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~ 619 (659)
T TIGR00954 541 SEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG 619 (659)
T ss_pred hhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 24577899999999999999988 9999999886 499999999999999999999999999999999999999
Q ss_pred hhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 625 YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 625 ~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
.+.+.+++. |+|+|+||||+++++.||+|++|+.
T Consensus 620 ~l~~~l~~~------~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 620 YMYRLCREF------GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHc------CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999988763 5899999999999999999999973
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-70 Score=684.75 Aligned_cols=540 Identities=18% Similarity=0.223 Sum_probs=413.4
Q ss_pred hccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhH----HHHhhhcccccccceechhhhHH
Q 005467 127 IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVL----LCVTSGIFSGLRSGCFSIANIVL 202 (695)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~----~~i~~~i~~~l~~~~~~~~~~~~ 202 (695)
++-+++.++..++..++..++.++.|+++...++.....+.... ...++++ +.++.+++.....+...+.+.++
T Consensus 312 ~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 389 (1522)
T TIGR00957 312 YKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDW--QGYFYTGLLFVCACLQTLILHQYFHICFVSGMRI 389 (1522)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666777788888889999999888864322211111 1111111 11222222222223344567778
Q ss_pred HHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHH
Q 005467 203 VKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICS 282 (695)
Q Consensus 203 ~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~ 282 (695)
...++..+|+|+++++..++++.++|++++++++|++++.+.. ..+..++...+.+++++++++..-.+.+++.+++++
T Consensus 390 r~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~ 468 (1522)
T TIGR00957 390 KTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMV 468 (1522)
T ss_pred HHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999998855 445556665555555554443332333444455555
Q ss_pred HHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehh
Q 005467 283 FLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFI 362 (695)
Q Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (695)
+++.+..++.+..++.+++..+..++..+.+.|.++|+++||.||+|+.+.+++++..++..+...+....... ..
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~----~~ 544 (1522)
T TIGR00957 469 LMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV----GT 544 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 55556666777778888888888999999999999999999999999999999888776655544433222111 11
Q ss_pred hhhhhhee--hheeecceeeec--cccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccc
Q 005467 363 TLYRSTQV--MAVLLGGMSIMI--GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 438 (695)
Q Consensus 363 ~l~~~~~~--~~l~~g~~~v~~--g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~ 438 (695)
++.....+ .++.++++.+.. +.++.+.+++.+.+...+..|+..+...+..+.++..+.+|+.++++.++++....
T Consensus 545 ~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~ 624 (1522)
T TIGR00957 545 FTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSI 624 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc
Confidence 11111111 122234454443 56788888887778888888988899999999999999999999998654322110
Q ss_pred ccccccc-ccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC
Q 005467 439 EGVKLQR-LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517 (695)
Q Consensus 439 ~~~~~~~-~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~ 517 (695)
......+ ..+.|+++|++|+|+++ ++++|+|+||+|+|||+++|+||||||||||+++|+|+++|++|+|.+||
T Consensus 625 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---- 699 (1522)
T TIGR00957 625 ERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---- 699 (1522)
T ss_pred cccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----
Confidence 1111111 12369999999999753 24799999999999999999999999999999999999999999999997
Q ss_pred cchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchh
Q 005467 518 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQR 595 (695)
Q Consensus 518 ~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQR 595 (695)
+||||+|+|++|++||+|||.+|. ..++++..++++.|++.+++..+|+|++|.+||+ +||||||||
T Consensus 700 ---------~i~yv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqR 768 (1522)
T TIGR00957 700 ---------SVAYVPQQAWIQNDSLRENILFGK--ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQR 768 (1522)
T ss_pred ---------EEEEEcCCccccCCcHHHHhhcCC--ccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHH
Confidence 599999999999999999999994 3567888899999999999999999999999995 999999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchh
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~e 675 (695)
|+||||+|++|+|++||||||+||+++++.|.+.+.+... ..+++|+|+|||+++.++.||+|++|++|+|+++|+|+|
T Consensus 769 iaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~-~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~ 847 (1522)
T TIGR00957 769 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEG-VLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQE 847 (1522)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh-hhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHH
Confidence 9999999999999999999999999999999998864311 134689999999999999999999999999999999999
Q ss_pred hhhcCchhHHHHhhh
Q 005467 676 LLHKGRLYAKLVKRQ 690 (695)
Q Consensus 676 Ll~~~g~Y~~l~~~q 690 (695)
++++++.|++++..+
T Consensus 848 l~~~~~~~~~l~~~~ 862 (1522)
T TIGR00957 848 LLQRDGAFAEFLRTY 862 (1522)
T ss_pred HHhcchhHHHHHHhh
Confidence 999999999988643
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-68 Score=637.34 Aligned_cols=535 Identities=21% Similarity=0.261 Sum_probs=410.3
Q ss_pred ceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhccccc--ccce--echhhhHHHHH
Q 005467 130 DKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGL--RSGC--FSIANIVLVKR 205 (695)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l--~~~~--~~~~~~~~~~~ 205 (695)
++|.++...++..+......+.|.++...+...... ........++++..++..++..+ +.++ ..+++.++..-
T Consensus 199 f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~--~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~a 276 (1381)
T KOG0054|consen 199 FGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEK--RLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSA 276 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCC--CcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHH
Confidence 445554444555555555888999998888654332 11222233333333322222222 1121 22344444444
Q ss_pred HHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHHH
Q 005467 206 LRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS 285 (695)
Q Consensus 206 lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~~ 285 (695)
+-..+|+|.+++.-.--...++|++++-+++|+++++++. ..+..++...+.+++++.+++..=.+-+++.+++..+++
T Consensus 277 l~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~-~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~ 355 (1381)
T KOG0054|consen 277 LISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAA-CFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLI 355 (1381)
T ss_pred HHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 4555589999988777777889999999999999999965 456777888888888777776655555666666666667
Q ss_pred HHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhh
Q 005467 286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLY 365 (695)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 365 (695)
.+..+..++.++.+++..+..+++.+.+.|.++||++||.|++|+.+.++.++.-++-.+.-.+.....+. ..++.
T Consensus 356 p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~----~~~~~ 431 (1381)
T KOG0054|consen 356 PLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSAL----NSFLN 431 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 77788888899999999999999999999999999999999999988877776555433333332221111 11111
Q ss_pred -hhheeh-heeeccee-eeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccccccc
Q 005467 366 -RSTQVM-AVLLGGMS-IMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVK 442 (695)
Q Consensus 366 -~~~~~~-~l~~g~~~-v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~ 442 (695)
....++ ++.++++. ...+.+++...++.+.+...+..|+..++..++.+.++.+|.+|+.+++..++...+......
T Consensus 432 ~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~ 511 (1381)
T KOG0054|consen 432 FFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSP 511 (1381)
T ss_pred HHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCC
Confidence 111111 12233333 334567787778888888899999999999999999999999999999976543222111012
Q ss_pred cccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH
Q 005467 443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 522 (695)
Q Consensus 443 ~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~ 522 (695)
..+.+..|+++|.+|++++....+.|+||||+|++|+.+||||+.|||||+|+..++|-.+..+|+|.++|.
T Consensus 512 ~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------- 583 (1381)
T KOG0054|consen 512 DEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------- 583 (1381)
T ss_pred CCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--------
Confidence 223345699999999998643456999999999999999999999999999999999999999999999993
Q ss_pred HHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHH
Q 005467 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIAR 600 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIAR 600 (695)
++||||+|+||+|||||||.||. ..++++-.+++++|++++.++.||.|-.|.|||+ +|||||||||+|||
T Consensus 584 -----iaYv~Q~pWI~ngTvreNILFG~--~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLAR 656 (1381)
T KOG0054|consen 584 -----VAYVPQQPWIQNGTVRENILFGS--PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLAR 656 (1381)
T ss_pred -----EEEeccccHhhCCcHHHhhhcCc--cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHH
Confidence 99999999999999999999993 6789999999999999999999999999999996 99999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
|+|+|+||.+||+|.||+|+++.+.|.+.-- ++..++||+|+|||.++.+++||+|+||+||+|++.|+|+||++.+
T Consensus 657 AVY~~adIYLLDDplSAVDahvg~~if~~ci---~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~ 733 (1381)
T KOG0054|consen 657 AVYQDADIYLLDDPLSAVDAHVGKHIFEECI---RGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSG 733 (1381)
T ss_pred HHhccCCEEEEcCcchhhhHhhhHHHHHHHH---HhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcc
Confidence 9999999999999999999999988776543 3336789999999999999999999999999999999999999999
Q ss_pred chhHHHHhh
Q 005467 681 RLYAKLVKR 689 (695)
Q Consensus 681 g~Y~~l~~~ 689 (695)
+.|.++..+
T Consensus 734 ~~~~~l~~~ 742 (1381)
T KOG0054|consen 734 GDFAELAHE 742 (1381)
T ss_pred hhHHHHhhc
Confidence 999988543
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-66 Score=647.98 Aligned_cols=531 Identities=19% Similarity=0.236 Sum_probs=407.2
Q ss_pred cceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHH----HHhhhcccccccceechhhhHHHH
Q 005467 129 RDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLL----CVTSGIFSGLRSGCFSIANIVLVK 204 (695)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~----~i~~~i~~~l~~~~~~~~~~~~~~ 204 (695)
.++|.++...+..++..++.++.|+++...+......+... ......+++. .++..++.....+.....+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~ 155 (1490)
T TIGR01271 77 CFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPE-REIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRI 155 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555667777788899999888875432111100 0011112211 122222222333444445555666
Q ss_pred HHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHH
Q 005467 205 RLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFL 284 (695)
Q Consensus 205 ~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~ 284 (695)
.+...+|+|+++++...+++.++|++++++++|++++.+.+.. +..++...+.+++++++++.+..+.+++.+++++++
T Consensus 156 ~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~-~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~ 234 (1490)
T TIGR01271 156 ALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLAL-AHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILL 234 (1490)
T ss_pred HHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666669999999999999999999999999999999997643 345566666667777777777777788888888888
Q ss_pred HHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhh
Q 005467 285 SIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITL 364 (695)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 364 (695)
+.+..++.++..+.+++..+..++..+.+.|.++|+++||.|++|+.+.+++++..++-.+...+...... +.......
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~-~~~~~~~~ 313 (1490)
T TIGR01271 235 ALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRY-FYSSAFFF 313 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 88888888888888888899999999999999999999999999999888887766655444443322211 11111111
Q ss_pred hhhheehheeecceeeeccccChhhhhhhhhhhhheeeeee-ecccchhHHHHhhcchhhHHHhhccCCccccccccccc
Q 005467 365 YRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATW-RMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL 443 (695)
Q Consensus 365 ~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~-~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~ 443 (695)
. ...+.++.++++.+..+ ++++.+++++.+...+..|+. .++..+..+.++.++++||.++++.++..... ..
T Consensus 314 ~-~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~---~~- 387 (1490)
T TIGR01271 314 S-GFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE---YN- 387 (1490)
T ss_pred H-HHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc---cc-
Confidence 1 11223344455555444 578888888777777766653 57788888899999999999999765432111 00
Q ss_pred ccccceEEEEEEeeecCCCC-------------------------------ccceeeeeeeEeecCcEEEEEeecCCChh
Q 005467 444 QRLMGHVQFVNISFHYPSRP-------------------------------TVPILNHVCLTIEANEVVAIVGLSGSGKS 492 (695)
Q Consensus 444 ~~~~~~I~f~nVsF~Y~~~~-------------------------------~~~vL~~isl~I~~Ge~vAIVG~SGSGKS 492 (695)
.....|+++|++|+|+... .+++|+|+||+|++||.++|+||+|||||
T Consensus 388 -~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKS 466 (1490)
T TIGR01271 388 -LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKS 466 (1490)
T ss_pred -CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHH
Confidence 1123599999999995310 13589999999999999999999999999
Q ss_pred hHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhH
Q 005467 493 TFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 572 (695)
Q Consensus 493 TLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI 572 (695)
||+++|+|+++|++|+|.+|| .|+||+|+|++|++||+|||.||. ..++++..++++.|++++++
T Consensus 467 TLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~L~~~l 531 (1490)
T TIGR01271 467 SLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGL--SYDEYRYTSVIKACQLEEDI 531 (1490)
T ss_pred HHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhcc--ccchHHHHHHHHHHhHHHHH
Confidence 999999999999999999998 499999999999999999999993 35567788889999999999
Q ss_pred hcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhH-HHhhhccccCcceEEEEeee
Q 005467 573 LSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHR 649 (695)
Q Consensus 573 ~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~-L~~~~~~~~~~~TvIiIaHr 649 (695)
+.+|+|++|.+||+ +|||||||||+||||+|++|+|+|||||||+||+++++.|.+. +... .+++|+|+|||+
T Consensus 532 ~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~----~~~~tvilvtH~ 607 (1490)
T TIGR01271 532 ALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKL----MSNKTRILVTSK 607 (1490)
T ss_pred HhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH----hcCCeEEEEeCC
Confidence 99999999999995 9999999999999999999999999999999999999999975 5554 346999999999
Q ss_pred cccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHHh
Q 005467 650 LSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 688 (695)
Q Consensus 650 lsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~ 688 (695)
++.++.||+|++|++|+|++.|+|+|+.+.++.|.+.+.
T Consensus 608 ~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~ 646 (1490)
T TIGR01271 608 LEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLL 646 (1490)
T ss_pred hHHHHhCCEEEEEECCEEEEEcCHHHHHhcChHHHHHHh
Confidence 999999999999999999999999999988888877663
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-64 Score=626.89 Aligned_cols=536 Identities=18% Similarity=0.205 Sum_probs=415.8
Q ss_pred hccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhH-H---HHhhhcccccccceechhhhHH
Q 005467 127 IGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVL-L---CVTSGIFSGLRSGCFSIANIVL 202 (695)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~-~---~i~~~i~~~l~~~~~~~~~~~~ 202 (695)
.+.+++.++..++..++..++.++.|+++...+......+. . .....++++ + .++.+++...+.+...+.+.++
T Consensus 239 ~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~-~-~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~ 316 (1560)
T PTZ00243 239 FAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNA-T-WGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQY 316 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556667778888888889999988887754322221 1 111111221 1 1222333333344555666677
Q ss_pred HHHHHHHHHHhhhcccccccc--ccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHH
Q 005467 203 VKRLRETLYSALLFQDVYFFD--TEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLI 280 (695)
Q Consensus 203 ~~~lr~~lf~~ll~~~~~ff~--~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~ 280 (695)
...+...+|+|+++++...+. +.++|++++.+++|++++.+++ ..+..++...+.++++++++..+..+.+++.+++
T Consensus 317 r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~-~~~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~v 395 (1560)
T PTZ00243 317 RSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFM-QYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAV 395 (1560)
T ss_pred HHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 777888899999999987776 5688999999999999999987 4456677778878887888877777788888777
Q ss_pred HHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceee
Q 005467 281 CSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMS 360 (695)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (695)
+++++.+..++.++..+.+++..+..++..+.+.|.++|+++||.+++|+.+.+++++..++-.+...+........
T Consensus 396 l~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~--- 472 (1560)
T PTZ00243 396 LLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVAT--- 472 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 77777777788888888888888899999999999999999999999999999999887665544433333222211
Q ss_pred hhhhhhhhe--ehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccc---
Q 005467 361 FITLYRSTQ--VMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ--- 435 (695)
Q Consensus 361 ~~~l~~~~~--~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~--- 435 (695)
.++..... +.++.++++.+..|.+|++.+++.+.+...+..|+..+...+..+.++.++++||.++++.++...
T Consensus 473 -~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~ 551 (1560)
T PTZ00243 473 -SFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTV 551 (1560)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc
Confidence 11111111 122345667777889999999999999999999999999999999999999999999997543100
Q ss_pred -cccc------------c---------------cc---------------------------cccccceEEEEEEeeecC
Q 005467 436 -FLSE------------G---------------VK---------------------------LQRLMGHVQFVNISFHYP 460 (695)
Q Consensus 436 -~~~~------------~---------------~~---------------------------~~~~~~~I~f~nVsF~Y~ 460 (695)
+..+ . .+ .....+.+.++|++|+++
T Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1560)
T PTZ00243 552 QDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSP 631 (1560)
T ss_pred ccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccccccccc
Confidence 0000 0 00 000113577888888754
Q ss_pred CC-------------------------------------CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 461 SR-------------------------------------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 461 ~~-------------------------------------~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++
T Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~ 711 (1560)
T PTZ00243 632 SSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE 711 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 10 12458999999999999999999999999999999999999
Q ss_pred CCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccc
Q 005467 504 PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 583 (695)
Q Consensus 504 p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~v 583 (695)
|++|+|.++ ++||||+|++++|++||+|||.++. ..+++++.++++.++++++++.+|+|++|.+
T Consensus 712 ~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~--~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i 776 (1560)
T PTZ00243 712 ISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFD--EEDAARLADAVRVSQLEADLAQLGGGLETEI 776 (1560)
T ss_pred CCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCC--hhhHHHHHHHHHHhhhHHHHHHhhccchHHh
Confidence 999999863 4799999999999999999999983 3456678889999999999999999999999
Q ss_pred ccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHH-HhhhccccCcceEEEEeeecccccccCeEE
Q 005467 584 DDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRIV 660 (695)
Q Consensus 584 ge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L-~~~~~~~~~~~TvIiIaHrlsti~~aD~Iv 660 (695)
|++ +|||||||||+||||++++|+|+|||||||+||+++++.+.+.+ ... .+|+|+|+|||+++.++.||+|+
T Consensus 777 ~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~----~~~~TvIlvTH~~~~~~~ad~ii 852 (1560)
T PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGA----LAGKTRVLATHQVHVVPRADYVV 852 (1560)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHh----hCCCEEEEEeCCHHHHHhCCEEE
Confidence 985 89999999999999999999999999999999999988887643 322 24699999999999999999999
Q ss_pred EeeCCeEEEeccchhhhhcCchhHHHHhh
Q 005467 661 VIDDGRIIEVGNHAELLHKGRLYAKLVKR 689 (695)
Q Consensus 661 vL~~G~Ive~Gth~eLl~~~g~Y~~l~~~ 689 (695)
+|++|++++.|+|+|+++. +.|.++...
T Consensus 853 ~l~~G~i~~~G~~~~l~~~-~~~~~~~~~ 880 (1560)
T PTZ00243 853 ALGDGRVEFSGSSADFMRT-SLYATLAAE 880 (1560)
T ss_pred EEECCEEEEecCHHHHHhC-hHHHHHHHh
Confidence 9999999999999999874 568777653
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-55 Score=460.62 Aligned_cols=236 Identities=24% Similarity=0.424 Sum_probs=219.2
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
|+|+|+||+|+|++. ..++|+|+||+|++||+++|+||||||||||+++|.|+++ .+|+|++||.++.+++...+|+.
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 469999999999743 2469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~ 605 (695)
|+||||++.+|++|+++|+.+.. ..++++++++++.+++++++.++|+||+|.++|+ +||||||||++||||++++
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG--KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc--CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999997441 3567899999999999999999999999999984 8999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHH
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 685 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~ 685 (695)
|+||||||||++||+++++.+++.|.+.. .++|+|+||||+++++.||||++|++|++++.|++++|+++.+.|++
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~----~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~ 232 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAF----ADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQ 232 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhc----CCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHH
Confidence 99999999999999999999999999863 36999999999999999999999999999999999999998888888
Q ss_pred HHhhhc
Q 005467 686 LVKRQT 691 (695)
Q Consensus 686 l~~~q~ 691 (695)
++....
T Consensus 233 ~~~~~~ 238 (275)
T cd03289 233 AISPSD 238 (275)
T ss_pred HHhhcc
Confidence 886553
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-53 Score=410.85 Aligned_cols=215 Identities=35% Similarity=0.539 Sum_probs=192.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC-CcchhHHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL-TDLDIRWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di-~~i~~~~lR~~ 527 (695)
-|+++||+.+|++ ..||+||||+|++||+++|+||||||||||+++|.||-+|++|+|.+||.++ .+.+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 3899999999974 4699999999999999999999999999999999999999999999999776 33478899999
Q ss_pred hccccCCceee-eeeccccccccCCc---CCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 528 IGFVGQEPQLL-QMDIKSNIMYGCPK---DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 528 I~~V~Qd~~LF-~~TI~eNI~~g~~~---~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
+|+|+|+..|| +-|+.||+.++ +- ..+. ++-.+.++++|+.|-.+..|. +|||||+||+|||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~la-p~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~---------qLSGGQqQRVAIA 148 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLA-PVKVKKLSKAEAREKALELLEKVGLADKADAYPA---------QLSGGQQQRVAIA 148 (240)
T ss_pred cCeecccccccccchHHHHHHhh-hHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc---------ccCcHHHHHHHHH
Confidence 99999999999 58999999998 32 1222 233445777888887777775 5999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||.-+|+++++||||||||||.-.+|.+.+.++.+ .|.|.++|||.+...+. ||||+.||+|+|+|+|+++++..
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~---eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE---EGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH---cCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 999999999999999999999999999999999875 47999999999999987 99999999999999999999987
Q ss_pred c
Q 005467 679 K 679 (695)
Q Consensus 679 ~ 679 (695)
+
T Consensus 226 ~ 226 (240)
T COG1126 226 N 226 (240)
T ss_pred C
Confidence 6
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-51 Score=419.73 Aligned_cols=234 Identities=48% Similarity=0.740 Sum_probs=215.0
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5799999999743 246999999999999999999999999999999999999999999999999998888888899999
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCc
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ 607 (695)
|++|++.+|+.|+.|||.++. ...+.+++.++++..++.++++.+|.|+++..+. .+||||||||++||||++.+|+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALAD-PGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEcCCchhccchHHHHhhccC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999873 3445567778888889999999999999998876 4899999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHH
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
+|||||||++||+.+.+.+.+.|.++. +|+|+|++||+++.+..||+|++|++|++++.|++++++++.+.|+.++
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDIC----AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 999999999999999999999999873 3689999999999998899999999999999999999999999999988
Q ss_pred hh
Q 005467 688 KR 689 (695)
Q Consensus 688 ~~ 689 (695)
++
T Consensus 235 ~~ 236 (237)
T cd03252 235 QL 236 (237)
T ss_pred hc
Confidence 64
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=418.98 Aligned_cols=219 Identities=35% Similarity=0.553 Sum_probs=192.2
Q ss_pred EEEEEEeeecCCC--CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH---HH
Q 005467 450 VQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WL 524 (695)
Q Consensus 450 I~f~nVsF~Y~~~--~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~---~l 524 (695)
|+++|||+.|+.. ....+|+||||+|++||+.+|||.||+|||||++++.++-.|++|+|.+||+|+..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999862 124699999999999999999999999999999999999999999999999888777654 55
Q ss_pred HhhhccccCCceeee-eeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 525 REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
|++||+++|++.|++ .|+.+|++|.-. ...+. +++.+.++.+|+.|..+.-| .+||||||||++|
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP---------~qLSGGQKQRVaI 152 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP---------AQLSGGQKQRVAI 152 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc---------hhcCcchhhHHHH
Confidence 789999999999997 899999998621 12223 44556777777777766666 4699999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||..+|+||+.|||||||||+|.+.|.+.|.++.+ .-|-|+++|||-++.+++ |||+.||++|+|+|+|+-.|+.
T Consensus 153 ARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~--~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 153 ARALANNPKILLCDEATSALDPETTQSILELLKDINR--ELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHH--HcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 9999999999999999999999999999999998865 357899999999999987 9999999999999999999987
Q ss_pred hc
Q 005467 678 HK 679 (695)
Q Consensus 678 ~~ 679 (695)
.+
T Consensus 231 ~~ 232 (339)
T COG1135 231 AN 232 (339)
T ss_pred cC
Confidence 65
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-51 Score=437.17 Aligned_cols=223 Identities=33% Similarity=0.498 Sum_probs=193.2
Q ss_pred cccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCC--
Q 005467 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLT-- 517 (695)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~-- 517 (695)
+..+.|+|+||+|+|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++.
T Consensus 76 ~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 344679999999999743 2479999999999999999999999999999999999997 57999999999997
Q ss_pred cchhHHHHhhhccccCCceeeeeeccccccccCCc-CCCchhHH-----HHHHHhhHhHhHhcCCCCcccccccc--ccC
Q 005467 518 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVKNEDIE-----WAAKQAYVHEFILSLPCGYETLVDDD--LLS 589 (695)
Q Consensus 518 ~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~~~eei~-----~A~~~a~l~~fI~~LP~G~dT~vge~--~LS 589 (695)
+++...+|+.++||||++++|++||+|||.|+... ..++++.+ ++++.++ |++++++.+++. +||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~LS 227 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNALS 227 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccCC
Confidence 44567889999999999999999999999987311 23444443 3344444 455667788874 999
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 668 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv 668 (695)
||||||++||||++++|+|||||||||+||+++.+.+++.|+++.+ ++|+|+|||++.++.. ||||+||++|+|+
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~----~~Tii~iTH~l~~i~~~~Driivl~~G~i~ 303 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK----KYSIIIVTHSMAQAQRISDETVFFYQGWIE 303 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999998843 5899999999999987 9999999999999
Q ss_pred Eeccchhhhhc
Q 005467 669 EVGNHAELLHK 679 (695)
Q Consensus 669 e~Gth~eLl~~ 679 (695)
|.|+++++...
T Consensus 304 e~g~~~~l~~~ 314 (329)
T PRK14257 304 EAGETKTIFIH 314 (329)
T ss_pred EeCCHHHHhcC
Confidence 99999999864
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-50 Score=416.55 Aligned_cols=239 Identities=31% Similarity=0.509 Sum_probs=217.9
Q ss_pred cccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH
Q 005467 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l 524 (695)
...+.|+++||+++|++. +.++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|++||+++.+++...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 456789999999999753 2469999999999999999999999999999999999999999999999999998888889
Q ss_pred HhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHh
Q 005467 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAI 602 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAl 602 (695)
|+.|+||+|++.+|++|++||+.+. + ...+++++++++.+++++++..+|.|++|.+++. +||||||||++||||+
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~-~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral 171 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPE-C-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAF 171 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcC-C-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999865 2 2345678888999999999999999999999873 8999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc-Cc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GR 681 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~-~g 681 (695)
+++|++|||||||++||+++++.+.+.+++.. +++|+|++||+++.+..||+|++|++|++++.|+++++.+. ++
T Consensus 172 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~----~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~ 247 (257)
T cd03288 172 VRKSSILIMDEATASIDMATENILQKVVMTAF----ADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDG 247 (257)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc----CCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccch
Confidence 99999999999999999999999999998763 36899999999999999999999999999999999999876 57
Q ss_pred hhHHHHhhh
Q 005467 682 LYAKLVKRQ 690 (695)
Q Consensus 682 ~Y~~l~~~q 690 (695)
.|++++..|
T Consensus 248 ~~~~~~~~~ 256 (257)
T cd03288 248 VFASLVRTD 256 (257)
T ss_pred HHHHHHhcc
Confidence 788888654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=398.61 Aligned_cols=215 Identities=35% Similarity=0.574 Sum_probs=193.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+|+|||++|.+ ..+++|+||+|++||.+.++|||||||||++|++.|+++|++|+|+|||.++++++.-.||++||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 799999999974 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceee-eeeccccccccCCc--CCC----chhHHHHHHHhhHh--HhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 530 FVGQEPQLL-QMDIKSNIMYGCPK--DVK----NEDIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 530 ~V~Qd~~LF-~~TI~eNI~~g~~~--~~~----~eei~~A~~~a~l~--~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
||-|..-|| +.||.|||++- |. .-+ ++++.+-++.++++ +|....|. .|||||+||+.+||
T Consensus 79 YviQqigLFPh~Tv~eNIa~V-P~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~---------eLSGGQQQRVGv~R 148 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATV-PKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH---------ELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhhcccCCCccHHHHHHhh-hhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch---------hcCcchhhHHHHHH
Confidence 999999999 58999999976 31 123 34455667777775 46666664 69999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc-ccccCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst-i~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
||..+|+||++|||.+|||+.+...+|+-+.++.+. -++|+++|||+... ++-||||+||++|+|+..|+++|++++
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~--l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE--LGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHH--hCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 999999999999999999999999999999988764 47999999999977 567999999999999999999999986
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=407.59 Aligned_cols=234 Identities=50% Similarity=0.773 Sum_probs=215.5
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5799999999642 36999999999999999999999999999999999999999999999999999888888999999
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCc
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ 607 (695)
|++|++.+|++|++||+.++. .+.+++++.++++.+++.+.+..+|.|++|.+.. ..||||||||++|||||+++|+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGR-PDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred EECCCChhhcchHHHHHhhcC-CCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999884 3556677888889999999999999999999876 3899999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHH
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
+|||||||++||+++.+.+.+.|.+.. +++|+|++||+++.+..||++++|++|++++.|+.+++..+.+.|++++
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~ 233 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVS----KGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMW 233 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHH
Confidence 999999999999999999999998873 2689999999999998899999999999999999999999888888887
Q ss_pred hhh
Q 005467 688 KRQ 690 (695)
Q Consensus 688 ~~q 690 (695)
+.+
T Consensus 234 ~~~ 236 (236)
T cd03253 234 KAQ 236 (236)
T ss_pred hcC
Confidence 653
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=405.82 Aligned_cols=231 Identities=53% Similarity=0.838 Sum_probs=211.8
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|+++ +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5799999999753 236999999999999999999999999999999999999999999999999998888888899999
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCc
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ 607 (695)
|++|++.+|+.|++||+.++. .+.+.+++.++++..+++++++.+|.|+++.++. ..||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGR-PGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred EeCCCCeeccccHHHHhhccC-CCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999884 3445567778888889999999999999998876 3899999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHH
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 686 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l 686 (695)
+|||||||++||+.+.+.+.+.|.++. +++|+|++||+++.++.||+|++|++|++++.|+.+++..+.+.|+.+
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLM----KNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhhh
Confidence 999999999999999999999998873 358999999999999889999999999999999999999888887754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=385.32 Aligned_cols=219 Identities=30% Similarity=0.482 Sum_probs=193.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC-----ceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-----GQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~-----G~I~idG~di~~--i~~ 521 (695)
.++++|+++.|++ +.+|+|||++|++++++|++|||||||||+++.+-|+.+..+ |+|.++|+|+.+ +|.
T Consensus 7 ~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 5899999999974 469999999999999999999999999999999999999887 999999999976 578
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-C----CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhH
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~----~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRI 596 (695)
-.+|++||+|+|.|.-|..||.||+.||.+- . .-||-++++++.|.++|-+.. .++.. ...|||||+||+
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---rL~~s--a~~LSGGQQQRL 158 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---RLHKS--ALGLSGGQQQRL 158 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---HhhCC--ccCCChhHHHHH
Confidence 9999999999999999999999999999311 1 124558889999999887653 22210 126999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~e 675 (695)
||||||.-+|+||++||||||||+.+..+|.+.+.++++ +-|+++|||.+.-. +-+|+...+-.|+++|.|+-++
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~----~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK----KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh----ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 999999999999999999999999999999999999954 47999999999876 4599999999999999999998
Q ss_pred hhhc
Q 005467 676 LLHK 679 (695)
Q Consensus 676 Ll~~ 679 (695)
+..+
T Consensus 235 iF~~ 238 (253)
T COG1117 235 IFTN 238 (253)
T ss_pred hhcC
Confidence 8754
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-49 Score=405.00 Aligned_cols=235 Identities=57% Similarity=0.905 Sum_probs=213.0
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|+++.+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 57899999997532346999999999999999999999999999999999999999999999999998877777888999
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCc
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ 607 (695)
|++|++.+|+.|++||+.++. .....+++.+.++..++.+++..+|.|+++.++. ..||||||||++||||++.+|+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGK-PDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EECCchhhhhhhHHHHhhccC-CCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999874 3445567777888889999999999999998876 3899999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHH
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
+|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.++.||+|++|++|++++.|+.+++....+.+++++
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~----~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 235 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAM----KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHh
Confidence 999999999999999999999998873 4689999999999998999999999999999999999998887777776
Q ss_pred hh
Q 005467 688 KR 689 (695)
Q Consensus 688 ~~ 689 (695)
..
T Consensus 236 ~~ 237 (238)
T cd03249 236 KA 237 (238)
T ss_pred hc
Confidence 54
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-49 Score=403.41 Aligned_cols=227 Identities=48% Similarity=0.782 Sum_probs=208.1
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
++|+++|++|+|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 468999999999742 369999999999999999999999999999999999999999999999999988888888999
Q ss_pred hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~ 605 (695)
++|++|++.+|++|++||+.++. ++..++++.++++..++.++++.+|.|+++.++. ..||||||||++||||++++
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGR-PNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999883 3445677888889999999999999999999876 38999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCc
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGR 681 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g 681 (695)
|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.++.||+|++|++|++++.|+.+++.++.|
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~~~ 229 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLM----KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhhCC
Confidence 99999999999999999999999998873 3689999999999998899999999999999999988876543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=398.09 Aligned_cols=218 Identities=38% Similarity=0.627 Sum_probs=202.1
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
|+|+++|++++|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999753 2469999999999999999999999999999999999999999999999999988888889999
Q ss_pred hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~ 605 (695)
++|++|++.+|++|++|||.+.. ..+++++.++++..++.+++..+|.|++|.++. ..||||||||++||||++++
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998763 356778899999999999999999999999876 38999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEecc
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gt 672 (695)
|++|||||||++||+.+.+.+.+.|.+.. +++|+|++||+++.+..||+|++|++|++++.|+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIREAF----KDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998873 3489999999999999999999999999999886
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=397.36 Aligned_cols=218 Identities=31% Similarity=0.505 Sum_probs=196.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.++++|++|+|++ +++|+|+||+|++||+++|+||+|||||||+|+|.|+.+|.+|+|++||+++.+++.+++-+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4789999999974 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCc-eeeeeeccccccccCCcC---------CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 529 GFVGQEP-QLLQMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 529 ~~V~Qd~-~LF~~TI~eNI~~g~~~~---------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
|||||++ .-|.-|+.|=+.+|+.|. .+++.+.+|++..++.++.++. + ..||||||||+.|
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~---~------~~LSGGerQrv~i 149 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP---V------DELSGGERQRVLI 149 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc---c------cccChhHHHHHHH
Confidence 9999996 577889999999996542 1233578899999999887652 2 2599999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||.++|+||+||||||+||.....+|++.++++.+ .+|+|+|+|.|++... +.||++++|++|+|+.+|+++|.+
T Consensus 150 ArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~--~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 150 ARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR--EKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH--hcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 9999999999999999999999999999999999864 3579999999999774 779999999999999999999988
Q ss_pred hcC
Q 005467 678 HKG 680 (695)
Q Consensus 678 ~~~ 680 (695)
...
T Consensus 228 T~e 230 (258)
T COG1120 228 TEE 230 (258)
T ss_pred CHH
Confidence 654
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=420.85 Aligned_cols=228 Identities=31% Similarity=0.479 Sum_probs=194.7
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH---HH
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~---lR 525 (695)
|+++||+++|++.. ..++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996422 246999999999999999999999999999999999999999999999999998887654 57
Q ss_pred hhhccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
++||||+|++.+|. .|++||+.++.. ...+ ++++.++++.+++.++.+..| ..||||||||++||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~---------~~LSgGqkQRV~IA 152 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP---------SNLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHH
Confidence 89999999999995 799999998631 1122 234566777787777665554 36999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+.+|++|+||||||+||+++...+.+.|+++.+. .|.|+|+|||+++.++. ||+|++|++|+|++.|+++++..
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~--~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRR--LGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 9999999999999999999999999999999988542 36899999999999965 99999999999999999999986
Q ss_pred c--CchhHHHHh
Q 005467 679 K--GRLYAKLVK 688 (695)
Q Consensus 679 ~--~g~Y~~l~~ 688 (695)
. ...+++++.
T Consensus 231 ~p~~~~~~~~~~ 242 (343)
T TIGR02314 231 HPKTPLAQKFIR 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 4 334455544
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=367.74 Aligned_cols=215 Identities=35% Similarity=0.529 Sum_probs=193.5
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|.+++|.|+|...+ =.++++|++||++||+||||||||||+||++||..|.+|+|.|||+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56889999996432 378999999999999999999999999999999999999999999999887764 46799
Q ss_pred cccCCceeee-eeccccccccCCcC-----CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~~-----~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
+++||..||. -||++||.+|..|. .+.+++..|+..+|+.+|...||. .||||||||+||||+|+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~---------~LSGGqRQRvALARclv 145 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG---------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc---------ccCchHHHHHHHHHHHh
Confidence 9999999995 79999999996543 245778999999999999999995 59999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcCch
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRL 682 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~g~ 682 (695)
|+.|||+||||.||||+.-.++....+.++..+ ++.|+++|||.++.++. +|+++++++|+|+++|.-+++.+..+.
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E--~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~~ 223 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDE--RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCCh
Confidence 999999999999999999999998888888653 57899999999999865 999999999999999999999986543
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-48 Score=415.58 Aligned_cols=219 Identities=31% Similarity=0.517 Sum_probs=182.4
Q ss_pred eEEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc-------
Q 005467 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL------- 519 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i------- 519 (695)
.|+++||+|+|++.. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|++||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 589999999997431 13699999999999999999999999999999999999999999999999998653
Q ss_pred ---------hhHHHHhhhccccCCc--eeeeeeccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCcc-ccccc-
Q 005467 520 ---------DIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDD- 585 (695)
Q Consensus 520 ---------~~~~lR~~I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~d-T~vge- 585 (695)
+...+|+.||||+|++ .+|+.|++|||.++.. .+.++++.. +. ++++++.+ |++ ...+.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~---~~--~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK---KL--AKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHH---HH--HHHHHHHc--CCChhHhcCC
Confidence 3567899999999998 7999999999998821 123333322 11 22344443 343 22333
Q ss_pred -cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEee
Q 005467 586 -DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVID 663 (695)
Q Consensus 586 -~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~ 663 (695)
.+||||||||++|||||+++|++||||||||+||+.+++.+.+.|.++.+ +|+|+|+|||+++.+ +.||+|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~---~g~TiiivtHd~~~~~~~adri~vl~ 250 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA---NNKTVFVITHTMEHVLEVADEVIVMD 250 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 38999999999999999999999999999999999999999999988742 368999999999987 5699999999
Q ss_pred CCeEEEeccchhhh
Q 005467 664 DGRIIEVGNHAELL 677 (695)
Q Consensus 664 ~G~Ive~Gth~eLl 677 (695)
+|+|++.|+|+++.
T Consensus 251 ~G~i~~~g~~~~~~ 264 (320)
T PRK13631 251 KGKILKTGTPYEIF 264 (320)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999999654
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=399.21 Aligned_cols=221 Identities=30% Similarity=0.469 Sum_probs=187.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh---HHHHh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~---~~lR~ 526 (695)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999964 369999999999999999999999999999999999999999999999999887664 56788
Q ss_pred hhccccCCceeeee-eccccccccCCc--CCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 527 KIGFVGQEPQLLQM-DIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~-TI~eNI~~g~~~--~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
.|+||+|++.+|.+ |++||+.++... ..+. +++.++++..++.++....| ..||||||||++||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~ia 148 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP---------AELSGGMKKRVALA 148 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence 99999999999985 999999886211 1222 23444555555544433322 36999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
||++++|++|||||||++||+++.+.+.+.|+++.+. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 149 RALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE--LGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 9999999999999999999999999999999987431 36899999999998865 99999999999999999999987
Q ss_pred cCchhH
Q 005467 679 KGRLYA 684 (695)
Q Consensus 679 ~~g~Y~ 684 (695)
....|.
T Consensus 227 ~~~~~~ 232 (235)
T cd03261 227 SDDPLV 232 (235)
T ss_pred CCChhh
Confidence 665554
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=389.88 Aligned_cols=218 Identities=45% Similarity=0.711 Sum_probs=198.3
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
++|+++|++++|+++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 368999999999743 2469999999999999999999999999999999999999999999999999887777778889
Q ss_pred hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~ 605 (695)
++|++|++.+|..|++||+.++. ...+++++.++++..++.+.++.+|.|++|.+.. ..||||||||++||||++.+
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGA-PLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCC-CCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999873 3345567888899999999999999999999876 38999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEec
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~G 671 (695)
|++|||||||++||.++...+.+.|.++.+ ++|+|++||+++.++.||+|++|++|++++.|
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLG----DKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcC----CCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999998742 37999999999988889999999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=396.43 Aligned_cols=522 Identities=19% Similarity=0.189 Sum_probs=370.6
Q ss_pred HHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccccccceechhhhHH
Q 005467 123 MWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVL 202 (695)
Q Consensus 123 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~~ 202 (695)
++...|++++.++....+..++++.++..-.++........ +... ........++.+..+.+.+.+.....+++.+
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g~~lLa~in~al~e~~--~~~~--~~l~~f~~llllf~~ss~is~lg~t~~gq~~ 79 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALGIGLLAFINQALIETA--DTSL--LVLPEFLGLLLLFMVSSLISQLGLTTLGQHF 79 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccce--eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889998888888777777776654444444332211 1111 1122222222223334445555667788999
Q ss_pred HHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHH
Q 005467 203 VKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICS 282 (695)
Q Consensus 203 ~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~ 282 (695)
..++|.++.++++..|+.-+++-+++.++.++++|+..++ +-...+..+.+..+..+++++++.++|+++.+++++.+.
T Consensus 80 I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~iv 158 (546)
T COG4615 80 IYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIV 158 (546)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 444556778888888999999999999999998888777
Q ss_pred HHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhh--hhhhHHHHHHHhhcchhhhccccccce-e
Q 005467 283 FLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEK--ELGRYKIWLEKLAFIRIRESMAYGLWN-M 359 (695)
Q Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 359 (695)
+.++...+.+.+..+.....++...++.+..+..++|.++++....-.+ ..+.|....+.+.+... ....+. .
T Consensus 159 v~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~----~~n~f~~l 234 (546)
T COG4615 159 VTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHII----RANTFHLL 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhh----hhhHHHHH
Confidence 7766666666666666666777778889999999999999998754332 22223222222222111 111110 0
Q ss_pred ehhhhhhhheehheeecceeeec-cccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccc
Q 005467 360 SFITLYRSTQVMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 438 (695)
Q Consensus 360 ~~~~l~~~~~~~~l~~g~~~v~~-g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~ 438 (695)
..++.+ ++....+.+..|+.+. +.-+.-....+++....+-.|+.++...+..+.++.+|++|+.++-..++....+.
T Consensus 235 a~~~~n-i~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~ 313 (546)
T COG4615 235 AVNWSN-IMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPR 313 (546)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCC
Confidence 001110 0001111111112221 22222233334444555667777777788888999999999998866444322221
Q ss_pred cccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc
Q 005467 439 EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (695)
Q Consensus 439 ~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~ 518 (695)
. ...++ -..||++||.|+|+.. .--+..||++|++||.|-|+|.+||||||+++||.|+|+|++|+|++||.+++.
T Consensus 314 ~-q~~p~-~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~ 389 (546)
T COG4615 314 P-QAFPD-WKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSA 389 (546)
T ss_pred C-CcCCc-ccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCC
Confidence 1 11122 2469999999999753 246889999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhccccCCceeeeeeccccccccCCcC-CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~-~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
=+++++|+-++-|+-|.|||+.++ | ++. ++.+.+.+-++.-.+..-. ++-+|- ...-.||-|||.|+|
T Consensus 390 e~ledYR~LfSavFsDyhLF~~ll------~-~e~~as~q~i~~~LqrLel~~kt-sl~d~~---fs~~kLStGQkKRlA 458 (546)
T COG4615 390 EQLEDYRKLFSAVFSDYHLFDQLL------G-PEGKASPQLIEKWLQRLELAHKT-SLNDGR---FSNLKLSTGQKKRLA 458 (546)
T ss_pred CCHHHHHHHHHHHhhhHhhhHhhh------C-CccCCChHHHHHHHHHHHHhhhh-cccCCc---ccccccccchHHHHH
Confidence 999999999999999999999876 3 223 6677776665555443221 222220 111279999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEec
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~G 671 (695)
+-=|++-+.||++|||=-+.=||.=.+...+.+.-..| ..|||++.|||+-.....|||++.|++|+++|.-
T Consensus 459 ll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK--~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 459 LLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLK--EQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHH--HhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 99999999999999999999999999988888776554 3689999999999999999999999999999864
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=390.31 Aligned_cols=219 Identities=36% Similarity=0.611 Sum_probs=197.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC-cchhHHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT-DLDIRWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~-~i~~~~lR~~ 527 (695)
-|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999865 57999999999999999999999999999999999999999999999999998 4788999999
Q ss_pred hccccCCc--eeeeeeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 528 IGFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 528 I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
+|+|+|+| .+|..||.|.++||.. ...+. +++.++++.++++++.+.-|. +||||||||+|||.
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~---------~LSGGqkqRvaIA~ 151 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPF---------NLSGGQKQRVAIAG 151 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCcc---------ccCCcceeeHHhhH
Confidence 99999999 7999999999999942 12333 346678888888888666553 69999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+|..+|++||||||||+||+...+.+.+.+.++.++ .|+|+|+|||++..+.. ||+++||++|+++.+|+++|+.++
T Consensus 152 vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~--~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 152 VLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE--GGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999998653 46899999999999977 999999999999999999988875
Q ss_pred C
Q 005467 680 G 680 (695)
Q Consensus 680 ~ 680 (695)
.
T Consensus 230 ~ 230 (235)
T COG1122 230 A 230 (235)
T ss_pred h
Confidence 4
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=383.78 Aligned_cols=209 Identities=40% Similarity=0.551 Sum_probs=177.5
Q ss_pred EEEEEEeeecCCCCc-cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH---HH-
Q 005467 450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WL- 524 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~---~l- 524 (695)
++++||+..|..... .++|+|+||+|++||.+||+||||||||||+++|.++-.|++|+|.++|+|+..++.+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 579999999964321 3699999999999999999999999999999999999999999999999999988743 34
Q ss_pred HhhhccccCCceeee-eeccccccccC---CcC--CCchhHHHHHHHhhHhHhHh-cCCCCccccccccccCCccchhHH
Q 005467 525 REKIGFVGQEPQLLQ-MDIKSNIMYGC---PKD--VKNEDIEWAAKQAYVHEFIL-SLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~-~TI~eNI~~g~---~~~--~~~eei~~A~~~a~l~~fI~-~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
|++||+|+|+..|+. -|+.|||.+.. ... ..++.+...++..|+.+... ..| ..||||||||+|
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p---------~eLSGGqqQRVA 152 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP---------SELSGGQQQRVA 152 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc---------hhcCHHHHHHHH
Confidence 467999999999886 69999998521 111 12345555666667766555 445 369999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEE
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 669 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive 669 (695)
|||||+.+|+|++.||||++||++|.+.|++.+.+..+ ..|+|+|+|||+......|||++.|++|++.+
T Consensus 153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~--~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK--ERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH--hcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999998854 24789999999999999999999999999543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=405.36 Aligned_cols=216 Identities=35% Similarity=0.518 Sum_probs=195.7
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
..|+++||+.+|++. .+|+|+||+|++||+++|+|||||||||++++|+||.+|++|+|+|||.++.+++++. +.
T Consensus 2 ~~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ 76 (338)
T COG3839 2 AELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RG 76 (338)
T ss_pred cEEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CC
Confidence 368999999999742 2999999999999999999999999999999999999999999999999999998875 79
Q ss_pred hccccCCceeee-eeccccccccCCc-----CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPK-----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~-----~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
||+|+|+.-||. .||+|||.|+-+- +.-++++.++++..++.+.++..|.. ||||||||+|||||
T Consensus 77 iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~---------LSGGQrQRVAlaRA 147 (338)
T COG3839 77 IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQ---------LSGGQRQRVALARA 147 (338)
T ss_pred EEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCccc---------CChhhHHHHHHHHH
Confidence 999999999995 6999999999421 22367788999999999999999964 99999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhc
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|.++|++++||||+|+||++.......-|.++.+. -+.|+|.|||+.... .-||||+||++|+|.+.|++.|+..+
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~--l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER--LGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh--cCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 99999999999999999999999888888887653 467999999999776 45999999999999999999999876
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=402.12 Aligned_cols=221 Identities=35% Similarity=0.548 Sum_probs=193.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++....++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743223599999999999999999999999999999999999999999999999999888888889999
Q ss_pred ccccCCc--eeeeeeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 529 GFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 529 ~~V~Qd~--~LF~~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
|||+|++ .++..||+|||.++... ..+ ++++.++++..++.++.+..| ..||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qrv~lAra 154 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP---------ARLSGGQKQRVAIAGA 154 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 36678999999987311 122 245677888888877766655 4799999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
++++|++|||||||++||+.+.+.+.+.|.++.+. .|+|+|+|||+++.+..||+|++|++|++++.|+.+++.+..
T Consensus 155 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 155 VAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD--YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 99999999999999999999999999999987531 368999999999999889999999999999999999987653
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-47 Score=373.93 Aligned_cols=225 Identities=31% Similarity=0.498 Sum_probs=193.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH---HHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~---~lR 525 (695)
-|++++|+|+|+++ .|++||||+|++||+++|+||||||||||++++.|+..|++|+|+++|.|+.+++.+ .+|
T Consensus 8 ~I~vr~v~~~fG~~---~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCCE---EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 59999999999753 699999999999999999999999999999999999999999999999999988764 568
Q ss_pred hhhccccCCceeee-eeccccccccC--CcCCCchhHHH----HHHHhhHhHh-HhcCCCCccccccccccCCccchhHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGC--PKDVKNEDIEW----AAKQAYVHEF-ILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~--~~~~~~eei~~----A~~~a~l~~f-I~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
+++|+++|+.-||+ -||.||+.|-- ..+.+++++++ -++.+|+..- .+..| ..||||.+.|.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P---------sELSGGM~KRva 155 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP---------SELSGGMRKRVA 155 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc---------hhhcchHHHHHH
Confidence 99999999999997 59999999842 12345555544 3445555444 23333 379999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eL 676 (695)
||||+.-||+||++|||||+||+.+...+-+.+.++.+. -+.|+++|||+++++.. ||||+++.+|+|+-+|+.+|+
T Consensus 156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~--lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDA--LGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh--hCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999888653 47899999999999876 899999999999999999999
Q ss_pred hhcCchh-HHHH
Q 005467 677 LHKGRLY-AKLV 687 (695)
Q Consensus 677 l~~~g~Y-~~l~ 687 (695)
.+.+..| ++++
T Consensus 234 ~~sd~P~v~qf~ 245 (263)
T COG1127 234 LASDDPWVRQFF 245 (263)
T ss_pred HhCCCHHHHHHh
Confidence 9976555 4444
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=390.35 Aligned_cols=213 Identities=32% Similarity=0.552 Sum_probs=185.1
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh-----cCCCceEEEcCccCCcch--hH
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-----EPSDGQIYIDGFPLTDLD--IR 522 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly-----~p~~G~I~idG~di~~i~--~~ 522 (695)
|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++|.++.+++ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999974 36999999999999999999999999999999999999 999999999999988776 56
Q ss_pred HHHhhhccccCCceeeeeeccccccccCCc-CC-----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhH
Q 005467 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~-----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRI 596 (695)
.+|+.++||+|++.+|..|++||+.++... .. .++++.++++..++.+.+...++ ...||||||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-------~~~LSgG~~qrv 150 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH-------ALGLSGGQQQRL 150 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC-------cccCCHHHHHHH
Confidence 778899999999999988999999876311 11 13456677777777666555432 247999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~e 675 (695)
+||||++++|++|||||||++||+++.+.+.+.|.+..+ + +|+|++||+++.+. .||+|++|++|++++.|+++|
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK---E-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh---C-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999998743 2 89999999999876 599999999999999999887
Q ss_pred h
Q 005467 676 L 676 (695)
Q Consensus 676 L 676 (695)
+
T Consensus 227 ~ 227 (227)
T cd03260 227 I 227 (227)
T ss_pred C
Confidence 5
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=388.15 Aligned_cols=217 Identities=49% Similarity=0.804 Sum_probs=194.9
Q ss_pred ccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH
Q 005467 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR 525 (695)
..+.|+++|++++|+++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45679999999999754224699999999999999999999999999999999999999999999999999887777888
Q ss_pred hhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhh
Q 005467 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAIL 603 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll 603 (695)
+.++|++|++.+|+.|++||+.++. ...+.+++.+.++..+++++++.+|.|+++.+... .||||||||++||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGL-QSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhcccc-CCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999873 33444556666677788999999999999988763 89999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeE
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 667 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~I 667 (695)
++|++|||||||++||+++.+.+.+.|.++. +++|+|+|||+++.+..||+|++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWP----ERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999873 24899999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-47 Score=374.65 Aligned_cols=225 Identities=36% Similarity=0.513 Sum_probs=188.0
Q ss_pred eEEEEEEeeecCCCCc-cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc-hhHHHHh
Q 005467 449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i-~~~~lR~ 526 (695)
.++++|+++.|+.+.. .++|+||||+|.+||++|||||||||||||.++|+|+-+|++|+|++||.++..- ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 4789999999975410 1499999999999999999999999999999999999999999999999876543 3447888
Q ss_pred hhccccCCcee-ee--eeccccc----cccCCcCCCchhHHHHHHHhhHhH-hHhcCCCCccccccccccCCccchhHHH
Q 005467 527 KIGFVGQEPQL-LQ--MDIKSNI----MYGCPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 527 ~I~~V~Qd~~L-F~--~TI~eNI----~~g~~~~~~~eei~~A~~~a~l~~-fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
.|-+|+|||+= +| .||++=| ... .-+-.+++++++++.+|+.+ |....|. .|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~-~~~~~~~~i~~~L~~VgL~~~~l~R~P~---------eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPH-GLSKSQQRIAELLDQVGLPPSFLDRRPH---------ELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccC-CccHHHHHHHHHHHHcCCCHHHHhcCch---------hcChhHHHHHHH
Confidence 99999999971 11 2444333 221 01224566888999999854 6666674 499999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||.-+|++||||||||+||.-..++|.+.|.+++++ .+-|.|+|||+++.+.+ ||||+||++|+|+|.++-+++.
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~--~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE--RGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh--cCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 99999999999999999999999999999999998764 46799999999999987 9999999999999999999998
Q ss_pred hc-CchhHH
Q 005467 678 HK-GRLYAK 685 (695)
Q Consensus 678 ~~-~g~Y~~ 685 (695)
.. .-.|.+
T Consensus 231 ~~~~h~ytr 239 (252)
T COG1124 231 SHPSHPYTR 239 (252)
T ss_pred cCCccHHHH
Confidence 87 555643
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-47 Score=408.37 Aligned_cols=228 Identities=33% Similarity=0.512 Sum_probs=189.5
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH---HH
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~---lR 525 (695)
|+++||+|+|++.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 246999999999999999999999999999999999999999999999999998876544 47
Q ss_pred hhhccccCCceeee-eeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
++||||+|++.+|. .|++||+.++.. ...++ +++.++++..++.++....| ..||||||||++||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qRv~lA 152 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP---------AQLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHHH
Confidence 88999999999986 799999988621 11222 33445555555554443332 37999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+.+|++|+||||||+||+++.+.+.+.|+++.+ ..|+|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~--~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINR--ELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999998753 136899999999999865 99999999999999999999986
Q ss_pred c--CchhHHHHh
Q 005467 679 K--GRLYAKLVK 688 (695)
Q Consensus 679 ~--~g~Y~~l~~ 688 (695)
+ +..++.++.
T Consensus 231 ~~~~~~~~~~~~ 242 (343)
T PRK11153 231 HPKHPLTREFIQ 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 5 233444443
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-47 Score=378.37 Aligned_cols=200 Identities=35% Similarity=0.532 Sum_probs=178.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.+++++|+.+|++ ..||+||||+|++||+++||||||||||||+++++||.+|++|+|+++|.++.... ..+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCE
Confidence 4899999999975 46999999999999999999999999999999999999999999999999885543 479
Q ss_pred ccccCCceeee-eeccccccccCCcCC------CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPKDV------KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~~~------~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
|||+|++.||. -||.||+.++-. .. .++++.++++.+|+.+|-+..|. .||||||||+|||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~-~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~---------qLSGGMrQRVaiARA 144 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLE-LRGKSKAEARERAKELLELVGLAGFEDKYPH---------QLSGGMRQRVAIARA 144 (248)
T ss_pred EEEeccCcccchhhHHhhheehhh-ccccchHhHHHHHHHHHHHcCCcchhhcCcc---------ccChHHHHHHHHHHH
Confidence 99999999997 799999999842 21 23467888999999999888885 599999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeC--CeEE
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDD--GRII 668 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~--G~Iv 668 (695)
|+.+|++|+||||.+|||+.|....++-+.++-+. .++|+++|||+.+.. .-+|||+||.+ |+|.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~--~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEE--TRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 99999999999999999999999999999988653 569999999999874 66999999999 5553
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-47 Score=390.37 Aligned_cols=219 Identities=31% Similarity=0.449 Sum_probs=188.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc---CCCceEEEcCccCCcchhHHHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~---p~~G~I~idG~di~~i~~~~lR 525 (695)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||+++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999974 369999999999999999999999999999999999985 6999999999999888878889
Q ss_pred hhhccccCCceeeeeeccccccccCCc-------CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 526 EKIGFVGQEPQLLQMDIKSNIMYGCPK-------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~TI~eNI~~g~~~-------~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
+.|+|++|++.+|+.|++||+.++... +..++++.++++..++.+++..+.+. .-.+||||||||++|
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~l 153 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQ-----NALALSGGQQQRLCI 153 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcC-----CcccCCHHHHHHHHH
Confidence 999999999999999999999886210 11223456667777776555432211 114799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|||++++|++|+|||||++||.++...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+++|+.
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS----HNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh----CCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999998873 3689999999999875 59999999999999999999997
Q ss_pred hc
Q 005467 678 HK 679 (695)
Q Consensus 678 ~~ 679 (695)
..
T Consensus 230 ~~ 231 (246)
T PRK14269 230 EN 231 (246)
T ss_pred hC
Confidence 64
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-47 Score=403.07 Aligned_cols=216 Identities=32% Similarity=0.546 Sum_probs=195.9
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
..|+++||+.+|++ ..+++||||+|++||+++++|||||||||++++|+||.+|++|+|.+||+|+.+++++ ++.
T Consensus 4 ~~l~i~~v~k~yg~---~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFGD---FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecCC---eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 36899999999973 4799999999999999999999999999999999999999999999999999998875 689
Q ss_pred hccccCCceee-eeeccccccccCC--cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 528 IGFVGQEPQLL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 528 I~~V~Qd~~LF-~~TI~eNI~~g~~--~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
||+|+|+.-|| +.||+|||.||-. .... ++++.++++.+++.++-...|. .|||||+||+||||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~---------qLSGGQqQRVALAR 149 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH---------QLSGGQQQRVALAR 149 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh---------hhChHHHHHHHHHH
Confidence 99999999999 5899999999943 1122 2478889999999998888774 59999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc-ccccCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst-i~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
||..+|++|+||||.||||.+-....+..+.++.+. .|.|.|+|||+-+. +.-+|||+||++|+|...|+++|++.+
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~--~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRE--LGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHh--cCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999999988764 58999999999876 567999999999999999999999976
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-47 Score=388.38 Aligned_cols=216 Identities=35% Similarity=0.535 Sum_probs=181.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch---hHHHHh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLRE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~---~~~lR~ 526 (695)
|+++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4789999999741 36999999999999999999999999999999999999999999999999998776 456788
Q ss_pred hhccccCCceeee-eeccccccccCCc-------------CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCcc
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-------------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 592 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~~-------------~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQ 592 (695)
.++||+|++.+|. .|++||+.++... ...++++.++++..++.+.....| ..|||||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~ 149 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA---------DQLSGGQ 149 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc---------ccCCHHH
Confidence 9999999999887 6999999875210 011223444455554443332211 3799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
|||++||||++++|++||||||||+||+.+...+.+.|+++.+ ..|+|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 150 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 150 QQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINR--EEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 9999999999999999999999999999999999999998743 13689999999999987 59999999999999999
Q ss_pred cchhhhh
Q 005467 672 NHAELLH 678 (695)
Q Consensus 672 th~eLl~ 678 (695)
+++++.+
T Consensus 228 ~~~~~~~ 234 (241)
T cd03256 228 PPAELTD 234 (241)
T ss_pred CHHHhhH
Confidence 9998743
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=385.62 Aligned_cols=225 Identities=35% Similarity=0.547 Sum_probs=189.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 5899999999964 3699999999999999999999999999999999999999999999999999888778889999
Q ss_pred ccccCCceeeeeeccccccccCCc-CCCchhHHHHHHHhhHh-HhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 529 GFVGQEPQLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 529 ~~V~Qd~~LF~~TI~eNI~~g~~~-~~~~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
+|++|++.+|+.|++||+.++... +..++++.+.++..++. ++...- -..||||||||++||||++++|
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRD---------VKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCC---------cccCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999986311 11223444455555442 222211 1379999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcC-chhH
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG-RLYA 684 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~-g~Y~ 684 (695)
++|||||||++||.++.+.+.+.|+++.+ ..|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.... ..|.
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKN--KMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHH--hCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence 99999999999999999999999998753 136899999999999864 9999999999999999999998653 2354
Q ss_pred HHH
Q 005467 685 KLV 687 (695)
Q Consensus 685 ~l~ 687 (695)
+.|
T Consensus 229 ~~~ 231 (241)
T PRK14250 229 KLF 231 (241)
T ss_pred HHH
Confidence 443
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=394.53 Aligned_cols=215 Identities=28% Similarity=0.502 Sum_probs=189.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+.+...+++.|
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999742 3699999999999999999999999999999999999999999999999999888888888999
Q ss_pred ccccCCc--eeeeeeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 529 GFVGQEP--QLLQMDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 529 ~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
|||+|++ .+|..|+.||+.++.. ...+ ++++.++++.+++.++....|. .||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---------~LSgG~~qrv~lara 152 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPY---------HLSYGQKKRVAIAGV 152 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChh---------hCCHHHHHHHHHHHH
Confidence 9999998 6888999999998721 1122 2456677788888777666553 699999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|+.+|++|||||||++||+.+...+.+.|.++.+ +|+|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 153 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN---QGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999998753 3689999999999984 69999999999999999987653
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=358.46 Aligned_cols=210 Identities=31% Similarity=0.499 Sum_probs=188.8
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh---HHHHh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~---~~lR~ 526 (695)
|+|+||+.+|++. +++|+||||+|+|||.+-++|||||||||++|||++-..|+.|+|.++|.|+..++. ..+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7999999999975 579999999999999999999999999999999999999999999999999988764 46899
Q ss_pred hhccccCCceee-eeeccccccccC-----CcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 527 KIGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 527 ~I~~V~Qd~~LF-~~TI~eNI~~g~-----~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
+||+|+||..|. +.|+.||++|.- ++..-.+++.++++.+|+.+-...||. .|||||+||+||||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~---------~LSGGEQQRvaIAR 150 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS---------QLSGGEQQRVAIAR 150 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc---------ccCchHHHHHHHHH
Confidence 999999999977 579999999862 122234678889999999999999996 49999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth 673 (695)
|+..+|++|+-||||.+||+++..+|++.++++.+ .|-||++.||+.+.+.. --|++.+++|+++....+
T Consensus 151 AiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr---~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR---LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh---cCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999999999999853 57899999999999977 458999999999875544
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=381.74 Aligned_cols=205 Identities=34% Similarity=0.552 Sum_probs=176.9
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH---HHHh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~---~lR~ 526 (695)
|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999643 13699999999999999999999999999999999999999999999999998776543 4788
Q ss_pred hhccccCCceeee-eeccccccccCC-----cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~-----~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
.++||+|++.+|. .|++||+.++.. ++..++++.++++..++.++....| ..||||||||++|||
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~lar 151 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP---------MQLSGGEQQRVAIAR 151 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence 9999999999886 599999987521 1112356677778777776665554 369999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeE
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 667 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~I 667 (695)
||+.+|++|||||||++||+++.+.+.+.|.++.+ +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 152 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 152 AIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR---RGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999988743 36899999999999864 999999999975
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=407.74 Aligned_cols=216 Identities=28% Similarity=0.477 Sum_probs=190.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.++++. ++.|
T Consensus 3 ~l~i~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDGK--TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCCC--CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 48999999999432 4699999999999999999999999999999999999999999999999999887654 4789
Q ss_pred ccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++....|. .||||||||+||||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---------~LSgGq~QRvalARAL 149 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPR---------ELSGGQRQRVAMGRAI 149 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChh---------hCCHHHHHHHHHHHHH
Confidence 99999999995 699999998732 1122 2456778888888888777663 6999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+++|++|+||||||+||+.+...+.+.|.++.+. .|.|+|+|||++..+. .||+|++|++|+|++.|+++|++.+
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR--LKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999987542 3689999999998764 5999999999999999999999875
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=394.98 Aligned_cols=217 Identities=25% Similarity=0.486 Sum_probs=182.8
Q ss_pred EEEEEEeeecCCCCc--cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc----chhHH
Q 005467 450 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRW 523 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~--~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~----i~~~~ 523 (695)
|+++||+|+|++... +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999974321 259999999999999999999999999999999999999999999999999853 34567
Q ss_pred HHhhhccccCCc--eeeeeeccccccccCCcC--CCch----hHHHHHHHhhHh-HhHhcCCCCccccccccccCCccch
Q 005467 524 LREKIGFVGQEP--QLLQMDIKSNIMYGCPKD--VKNE----DIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 524 lR~~I~~V~Qd~--~LF~~TI~eNI~~g~~~~--~~~e----ei~~A~~~a~l~-~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
+|+.||||+|++ .+|..|+.|||.++. .. .+.+ ++.++++..++. ++....| ..|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---------~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGP-QNFGIPKEKAEKIAAEKLEMVGLADEFWEKSP---------FELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHH-HHcCCCHHHHHHHHHHHHHHcCCChhhccCCc---------ccCCHHHHH
Confidence 899999999987 799999999999883 22 2222 234445555542 2322222 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth 673 (695)
|++|||||+.+|++|||||||++||+.+...+.+.|.++.+ +|+|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~---~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ---SGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999988743 3689999999999874 6999999999999999999
Q ss_pred hhhhhc
Q 005467 674 AELLHK 679 (695)
Q Consensus 674 ~eLl~~ 679 (695)
+|+..+
T Consensus 229 ~~~~~~ 234 (288)
T PRK13643 229 SDVFQE 234 (288)
T ss_pred HHHHcC
Confidence 998754
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=385.98 Aligned_cols=215 Identities=34% Similarity=0.501 Sum_probs=180.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh---HHHHh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~---~~lR~ 526 (695)
|+++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2369999999999999999999999999999999999999999999999999877653 45688
Q ss_pred hhccccCCceeee-eeccccccccCCc-------------CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCcc
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-------------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 592 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~~-------------~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQ 592 (695)
.++||+|++.+|. .|++||+.++... ...++++.++++..++.++....| ..|||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~ 150 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---------DQLSGGQ 150 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHH
Confidence 9999999999886 6999999876211 011223444555555544433221 3799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
|||++||||++++|++|||||||++||+++.+.+.+.|.++.+ ..++|+|+|||+++.+. .||++++|++|++++.|
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINK--EDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999998743 13689999999999985 59999999999999999
Q ss_pred cchhhh
Q 005467 672 NHAELL 677 (695)
Q Consensus 672 th~eLl 677 (695)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999874
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=406.60 Aligned_cols=215 Identities=31% Similarity=0.503 Sum_probs=189.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+.+. .++.|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5899999999964 369999999999999999999999999999999999999999999999999987654 36789
Q ss_pred ccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.||. .|++|||.|+.. ...+ ++++.++++..++.++.+..| ..||||||||+||||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~---------~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV---------DQISGGQQQRVALARAL 151 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999996 599999999732 1122 346677788888777665555 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+++|++|+||||||+||+.+...+.+.|+++.+. .++|+|+|||+++.+ .-||+|+||++|+|++.|+++|+.++
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ--FNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988542 368999999999987 55999999999999999999999875
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=392.54 Aligned_cols=222 Identities=35% Similarity=0.541 Sum_probs=191.7
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+|+|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999753334699999999999999999999999999999999999999999999999999877777889999
Q ss_pred ccccCCc--eeeeeeccccccccCC-cCCCch----hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 529 GFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 529 ~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
|||+|++ .++..|+.|||.++.. ...+++ ++.++++.+++.++....| ..||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lAra 154 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP---------ARLSGGQKQRVAVAGI 154 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 4778899999987621 122333 3456677777766655433 3699999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCc
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGR 681 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g 681 (695)
++++|++|||||||++||+.+.+.+.+.|.++.+ ..|+|+|+|||+++.+..||+|++|++|++++.|+++|+++..+
T Consensus 155 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 155 IALRPEIIILDESTSMLDPTGRQEIMRVIHEIKE--KYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHH
Confidence 9999999999999999999999999999998753 13689999999999998899999999999999999999987544
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=393.11 Aligned_cols=222 Identities=35% Similarity=0.567 Sum_probs=194.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+.+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999743 24699999999999999999999999999999999999999999999999999888877888999
Q ss_pred ccccCCc--eeeeeeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 529 GFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 529 ~~V~Qd~--~LF~~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
|||+|++ .+++.|+.|||.++... ..+ ++++.++++..++.+++...|. .||||||||++||||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---------~LS~G~~qrv~lara 154 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH---------RLSGGQKQRVAIAGV 154 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcc---------cCCHHHHHHHHHHHH
Confidence 9999998 46678999999986211 122 2446777888888887777663 699999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCc
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGR 681 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g 681 (695)
++.+|++|||||||++||+.+...+.+.|.++.+. .|+|+|++||+++.+..||+|++|++|++++.|+.+++.+...
T Consensus 155 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~--~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 232 (279)
T PRK13635 155 LALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ--KGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGH 232 (279)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCHH
Confidence 99999999999999999999999999999987531 3689999999999998899999999999999999999876544
Q ss_pred h
Q 005467 682 L 682 (695)
Q Consensus 682 ~ 682 (695)
.
T Consensus 233 ~ 233 (279)
T PRK13635 233 M 233 (279)
T ss_pred H
Confidence 3
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=384.54 Aligned_cols=221 Identities=28% Similarity=0.492 Sum_probs=182.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH-Hhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l-R~~I 528 (695)
|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999964 369999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred ccccCCceeeee-eccccccccCCcCCCchhH-------HHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHH
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDI-------EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAI 598 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei-------~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaI 598 (695)
+||+|++.+|.+ |++|||.++.. ......+ ........+++.++.+ |++..... ..||||||||++|
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 154 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQ-ARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEI 154 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHh-hccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHH
Confidence 999999999986 99999988731 1111000 0011112234445443 44443333 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|||++.+|++|||||||++||+.+.+.+.+.|.+..+ +++|+|+|||+++.+.. ||+|++|++|+|++.|++++++
T Consensus 155 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE---RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 9999999999999999999999999999999988742 36899999999999865 9999999999999999999986
Q ss_pred hc
Q 005467 678 HK 679 (695)
Q Consensus 678 ~~ 679 (695)
..
T Consensus 232 ~~ 233 (236)
T cd03219 232 NN 233 (236)
T ss_pred cC
Confidence 53
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=378.48 Aligned_cols=212 Identities=30% Similarity=0.552 Sum_probs=186.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++|++|+|.++ +||+||||+|++|+++||+||+|||||||+|+++|+.+|.+|+|.++|.+.++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999753 59999999999999999999999999999999999999999999999998876543 5689
Q ss_pred ccccCCc---eeeeeeccccccccCCcC---------CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhH
Q 005467 529 GFVGQEP---QLLQMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (695)
Q Consensus 529 ~~V~Qd~---~LF~~TI~eNI~~g~~~~---------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRI 596 (695)
|||||.. +=|.-||+|=+.+|+... .+.+++.+|++.+++.++..+ |- +.|||||+||+
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-~i--------~~LSGGQ~QRV 148 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-QI--------GELSGGQKQRV 148 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-cc--------cccCcHHHHHH
Confidence 9999955 457889999999985322 134889999999999988654 22 26999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~e 675 (695)
.|||||..+|++|+|||||+++|+.++..+.+.|.++++ +|+||++|+|+++.+. .||+|+.|+ ++++..|+.+|
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~---eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~ 224 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ---EGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEE 224 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhh
Confidence 999999999999999999999999999999999999975 3899999999999986 599999995 67788999999
Q ss_pred hhhc
Q 005467 676 LLHK 679 (695)
Q Consensus 676 Ll~~ 679 (695)
.+..
T Consensus 225 ~~~~ 228 (254)
T COG1121 225 VLTE 228 (254)
T ss_pred ccCH
Confidence 8764
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=394.36 Aligned_cols=220 Identities=31% Similarity=0.529 Sum_probs=184.0
Q ss_pred eEEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch--hHHH
Q 005467 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWL 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~--~~~l 524 (695)
.|+++||+|+|++.. .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999997422 136999999999999999999999999999999999999999999999999997753 4577
Q ss_pred HhhhccccCCc--eeeeeeccccccccCC-cCCCch----hHHHHHHHhhHh--HhHhcCCCCccccccccccCCccchh
Q 005467 525 REKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 525 R~~I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~e----ei~~A~~~a~l~--~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
|++||||+|++ .+|+.|++|||.++.. ...+.+ ++.++++.+++. ++....| ..||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---------~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSP---------FELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCc---------ccCCHHHHHH
Confidence 89999999998 5789999999998721 123333 344555555553 2211111 3799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~ 674 (695)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+. .|+|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE--YNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999987531 3689999999999885 69999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
|+.+.
T Consensus 231 ~~~~~ 235 (287)
T PRK13637 231 EVFKE 235 (287)
T ss_pred HHHhC
Confidence 98653
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=385.84 Aligned_cols=215 Identities=32% Similarity=0.500 Sum_probs=181.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .++.+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV 76 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence 3789999999974 369999999999999999999999999999999999999999999999999876543 35789
Q ss_pred ccccCCceeee-eeccccccccCCc-CC----C----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPK-DV----K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~-~~----~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
+||+|++.+|. .|++||+.++... .. + ++++.++++..++.++....| ..||||||||++|
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~l 147 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP---------AQLSGGQRQRVAL 147 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence 99999999986 6999999986311 11 1 123444555555544443322 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|||++++|++|||||||++||+++.+.+.+.|.+..+. .++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDE--LHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 99999999999999999999999999999999987531 3689999999999875 59999999999999999999997
Q ss_pred hc
Q 005467 678 HK 679 (695)
Q Consensus 678 ~~ 679 (695)
+.
T Consensus 226 ~~ 227 (239)
T cd03296 226 DH 227 (239)
T ss_pred cC
Confidence 64
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=381.10 Aligned_cols=212 Identities=26% Similarity=0.511 Sum_probs=178.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.... ..+++.++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5799999999742 146999999999999999999999999999999999999999999999999987643 66788999
Q ss_pred cccCCceee-eeeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLL-QMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF-~~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+| ..|++||+.++.. ...+. +++.++++..++.+... +.+ ..||||||||++||||++
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~--~~LS~G~~qrv~la~al~ 149 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-------KRA--RTLSGGMKRKLSLAIALI 149 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-------Chh--hhCCHHHHHHHHHHHHHh
Confidence 999999998 5799999987521 11121 23444455444443322 221 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhh
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eL 676 (695)
++|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 150 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEVRK----GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999998743 4899999999999864 999999999999999999876
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=394.36 Aligned_cols=223 Identities=29% Similarity=0.535 Sum_probs=184.6
Q ss_pred eEEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc----hhH
Q 005467 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i----~~~ 522 (695)
.|+++||+|+|++.+ ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 379999999997432 13699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHHhhhccccCCc--eeeeeeccccccccCCc-CCCchhHHHHHHHhhHhHhHhcCCCCcccccc-c--cccCCccchhH
Q 005467 523 WLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVD-D--DLLSGGQKQRI 596 (695)
Q Consensus 523 ~lR~~I~~V~Qd~--~LF~~TI~eNI~~g~~~-~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vg-e--~~LSGGQkQRI 596 (695)
.+|+.||||+|++ .+|..|+.|||.++... ..+.++..+. +.+.++.+ |+++..- . ..||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 7899999999987 58889999999987211 2233333221 23334432 5553322 2 37999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~e 675 (695)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ..|+|+|+|||+++.+. .||+|++|++|+|++.|++++
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~--~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 232 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT--DENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH--hCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999998753 23689999999999875 699999999999999999999
Q ss_pred hhhcC
Q 005467 676 LLHKG 680 (695)
Q Consensus 676 Ll~~~ 680 (695)
+.++.
T Consensus 233 ~~~~~ 237 (286)
T PRK13646 233 LFKDK 237 (286)
T ss_pred HHhCH
Confidence 87754
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=380.76 Aligned_cols=206 Identities=35% Similarity=0.554 Sum_probs=174.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 578999999964 36999999999999999999999999999999999999999999999999987654 3567899
Q ss_pred cccCCceeee-eeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+|. .|++||+.++... ..+ ++++.++++..++.++....| .+||||||||++||||++
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP---------HELSGGQQQRVALARALA 146 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999886 6999999876211 111 234555666666655544433 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
++|++|||||||++||+++.+.+.+.|.++.+ ..|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQR--ELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--HcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999998743 136899999999998754 9999999999999876
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=389.07 Aligned_cols=219 Identities=32% Similarity=0.467 Sum_probs=185.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~--i~~ 521 (695)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|++||+++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5899999999964 3699999999999999999999999999999999999997 48999999998853 345
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-C-C----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-V----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~-~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
..+|+.|+||+|++.+|+.|++|||.++... . . .++++.++++.+++.+.+ ++.+++.. ..||||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~~--~~LSgG~~qr 158 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNTNA--LSLSGGQQQR 158 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhCCc--ccCCHHHHHH
Confidence 5778899999999999999999999987311 1 1 123455566666654332 23344422 4799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++++|++|||||||++||+.+...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK----ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999883 2589999999999975 49999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++.++
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 99754
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=384.00 Aligned_cols=218 Identities=32% Similarity=0.499 Sum_probs=183.9
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH---HHH
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~---~lR 525 (695)
|+++||+++|+++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999997531 12699999999999999999999999999999999999999999999999998876543 357
Q ss_pred hhhccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
+.|+||+|++.+|. .|++|||.++.. ...+ .+++.++++..++.+.+...| ..||||||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la 152 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP---------AQLSGGQKQRVGIA 152 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh---------hhCCHHHHHHHHHH
Confidence 88999999999997 699999987621 1111 234455556665555444433 37999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
||++++|++|||||||++||+.+.+.+.+.|.++.+. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 153 RALANNPKVLLCDEATSALDPETTQSILALLRDINRE--LGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999987531 36899999999999865 99999999999999999998865
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-46 Score=373.39 Aligned_cols=204 Identities=33% Similarity=0.547 Sum_probs=179.3
Q ss_pred cceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHh
Q 005467 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~ 526 (695)
.+.|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 3579999999999753 236999999999999999999999999999999999999999999999999998888888899
Q ss_pred hhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
.|+||+|++.+|++|++|||.+.+ ..+++++.++++ ++. .-..|||||+||++||||++++|
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~--------------~~~--~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR--------------VSE--GGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh--------------ccC--CCCcCCHHHHHHHHHHHHHhhCC
Confidence 999999999999999999998762 334445544443 111 11379999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccc
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth 673 (695)
++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+..||++++|++|++++.|++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEF----TNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999998873 36899999999999988999999999999998864
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-46 Score=378.64 Aligned_cols=218 Identities=29% Similarity=0.456 Sum_probs=178.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH-Hhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l-R~~I 528 (695)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.... |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 579999999964 369999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred ccccCCceeeee-eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ 607 (695)
+||+|++.+|.+ |++||+.++. .....++..+. ...+.+.+..+++.+++.+ ..||||||||++||||++++|+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~-~~~~~~~~~~~--~~~~l~~~~~l~~~~~~~~--~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGA-YARRRAKRKAR--LERVYELFPRLKERRKQLA--GTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHh-hhcCchhHHHH--HHHHHHHHHhhhhhhhCch--hhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999986 9999999873 22111111111 1111222212222233221 3799999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
+|+|||||++||+++...+.+.|.++.+ +++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRD---EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999998743 36899999999998755 99999999999999999888754
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=366.33 Aligned_cols=218 Identities=34% Similarity=0.515 Sum_probs=191.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch---hHHHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~---~~~lR 525 (695)
.|+++||+..||+. +++|+||||+|++||.|||+||||||||||++.|.|+.+|++|+|.+||.++...+ ...+|
T Consensus 3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 48999999999854 57999999999999999999999999999999999999999999999999998887 66778
Q ss_pred hhhccccCCceeee-eeccccccccCCc-------------CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCc
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCPK-------------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 591 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~~-------------~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGG 591 (695)
++||+++|++-|-. .|+.+|+..|+-. ..+.++..+|++.+|+.|..-.- .++||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr---------a~~LSGG 151 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR---------ASTLSGG 151 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH---------hccCCcc
Confidence 89999999999886 5899999888421 11234456677788777664431 1379999
Q ss_pred cchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEe
Q 005467 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV 670 (695)
Q Consensus 592 QkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~ 670 (695)
|+||+||||||..+|+|++-|||+|+||+++.+.|++.|+++.+ ..|.|+|+.-|.+...++ ||||+-|++|+|+-.
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~--~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQ--EDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHH--HcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 99999999999999999999999999999999999999999865 368999999999999865 999999999999999
Q ss_pred ccchhhhhc
Q 005467 671 GNHAELLHK 679 (695)
Q Consensus 671 Gth~eLl~~ 679 (695)
|+.+||-+.
T Consensus 230 g~~~el~~~ 238 (258)
T COG3638 230 GPASELTDE 238 (258)
T ss_pred CChhhhhHH
Confidence 999997543
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=382.05 Aligned_cols=213 Identities=31% Similarity=0.439 Sum_probs=178.3
Q ss_pred eEEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH---H
Q 005467 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~---l 524 (695)
-++++||+|+|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++.+++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997432 146999999999999999999999999999999999999999999999999998877644 3
Q ss_pred H-hhhccccCCceeeee-eccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 525 R-EKIGFVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 525 R-~~I~~V~Qd~~LF~~-TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
| +.|+||+|++.+|.. |++||+.++.. ...+ ++++.++++..++.++....| ..||||||||++
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgG~~qrl~ 155 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP---------SELSGGERQRVA 155 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHH
Confidence 3 679999999999975 99999987421 0111 234455556555544433322 379999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEecc
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gt 672 (695)
||||++.+|++|||||||++||+++.+.+.+.|.++.+ .+|+|+|+|||+++.+..+|++++|++|+|++.|.
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 156 IARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNR--LQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999998743 13689999999999999999999999999998775
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-46 Score=392.29 Aligned_cols=219 Identities=28% Similarity=0.488 Sum_probs=186.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC--cchhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~--~i~~~~lR~ 526 (695)
-|+++||+|+|++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSDG--THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 48999999999632 46999999999999999999999999999999999999999999999999984 345567889
Q ss_pred hhccccCCc--eeeeeeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 527 KIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 527 ~I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
.||||+|++ .+|+.|++|||.++.. .+.+. +++.++++..+++++.+..+ .+||||||||++||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrl~la 153 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPT---------HCLSFGQKKRVAIA 153 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCc---------ccCCHHHHHHHHHH
Confidence 999999998 5789999999987621 11222 34555666666655433221 37999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+.+|++|||||||++||+++...+.+.|.++.+. .|+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE--LGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999987531 3689999999999986 599999999999999999999877
Q ss_pred cC
Q 005467 679 KG 680 (695)
Q Consensus 679 ~~ 680 (695)
..
T Consensus 232 ~~ 233 (283)
T PRK13636 232 EK 233 (283)
T ss_pred CH
Confidence 54
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=385.37 Aligned_cols=218 Identities=32% Similarity=0.516 Sum_probs=184.1
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC-----CceEEEcCccCCcc--hhH
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTDL--DIR 522 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-----~G~I~idG~di~~i--~~~ 522 (695)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++.+. +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999974 35999999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHHhhhccccCCceeeeeeccccccccCCc-C-CC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhH
Q 005467 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~-~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRI 596 (695)
.+|+.|+||+|++.+|..|+.||+.++... . .+ ++++.++++..++.+++... .+.. -..||||||||+
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LSgG~~qrv 153 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDR---LHDS--ALGLSGGQQQRL 153 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhH---hhCC--cccCCHHHHHHH
Confidence 778899999999999999999999876211 1 11 23455666677766333111 1111 137999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~e 675 (695)
+||||++++|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++|
T Consensus 154 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (247)
T TIGR00972 154 CIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK----KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQ 229 (247)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999998743 379999999999875 599999999999999999999
Q ss_pred hhhc
Q 005467 676 LLHK 679 (695)
Q Consensus 676 Ll~~ 679 (695)
+...
T Consensus 230 ~~~~ 233 (247)
T TIGR00972 230 IFTN 233 (247)
T ss_pred HHhC
Confidence 9754
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-46 Score=372.26 Aligned_cols=199 Identities=35% Similarity=0.506 Sum_probs=179.0
Q ss_pred EEEEEEeeecCCCCc--cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 450 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~--~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
|+++||+++|+++.+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999975311 3699999999999999999999999999999999999999999999999 6
Q ss_pred hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~ 605 (695)
|+||+|++++|++|++||+.++. ..++++..++++.+++.+++..+|.|++|.+++. .||||||||++||||++.+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~ 145 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD 145 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC--CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999973 3455677888889999999999999999999864 8999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhH-HHhhhccccCcceEEEEeeecccccccCeEEEeeCCe
Q 005467 606 PAILLLDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~-L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~ 666 (695)
|++++|||||++||+++.+.+.+. +.+..+ +++|+|++||+++.++.||+|++|++|+
T Consensus 146 p~llllDEP~~~LD~~~~~~l~~~ll~~~~~---~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLL---NNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhcc---CCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999998888774 454432 3689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=403.07 Aligned_cols=215 Identities=30% Similarity=0.463 Sum_probs=187.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.++. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999974 3699999999999999999999999999999999999999999999999999876653 6789
Q ss_pred ccccCCceeee-eeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.+|. .|++|||.|+... ..+ ++++.++++..++.++.+..| ..||||||||+||||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~---------~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP---------GQLSGGQQQRVALARAL 149 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999995 7999999998321 112 345566677766666655444 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+++|++|+||||||+||..+...+.+.|.++.+. .+.|+|+|||+++.+ .-||+|++|++|++++.|+++|++++
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR--LGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999987542 368999999999987 45999999999999999999999875
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-46 Score=392.35 Aligned_cols=221 Identities=29% Similarity=0.436 Sum_probs=183.1
Q ss_pred eEEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc----chhH
Q 005467 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~----i~~~ 522 (695)
.|+++||+|+|++.. ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999997432 1369999999999999999999999999999999999999999999999999853 3456
Q ss_pred HHHhhhccccCCc--eeeeeeccccccccCC-cCCCch----hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 523 WLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 523 ~lR~~I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
.+|+.||||+|++ .+|+.|++|||.++.. ...+.+ ++.++++.+++++.+. ++. -..||||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~------~~~--~~~LSgGq~qr 153 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL------ARS--PFELSGGQMRR 153 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh------hCC--cccCCHHHHHH
Confidence 7888999999997 6888999999998721 122333 3344455555532111 111 13799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~ 674 (695)
++|||||+.+|++|||||||++||+.+...+.+.|.++.+ ..|.|||+|||+++.+. .||||++|++|++++.|+.+
T Consensus 154 v~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~--~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 154 VAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK--EKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999988743 13689999999999985 59999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++.++
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 98654
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-46 Score=386.00 Aligned_cols=217 Identities=32% Similarity=0.553 Sum_probs=184.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~--i~~ 521 (695)
.|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||+++.+ .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4899999999964 369999999999999999999999999999999999975 689999999999864 345
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-CC-----CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~-----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
..+|+.|+||+|++.+|..|++||+.++... .. .++++.++++.+++.+++.. ..+. ..||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 6788899999999999999999999886211 11 13455666777766544322 1222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++.+|++|||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+. .||+|++|++|+|++.|+
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK----ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999873 2589999999999985 599999999999999999
Q ss_pred chhhhhc
Q 005467 673 HAELLHK 679 (695)
Q Consensus 673 h~eLl~~ 679 (695)
++++.+.
T Consensus 232 ~~~~~~~ 238 (253)
T PRK14242 232 TEQIFTR 238 (253)
T ss_pred HHHHHcC
Confidence 9999764
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=385.65 Aligned_cols=239 Identities=28% Similarity=0.426 Sum_probs=203.2
Q ss_pred hhHHHhhccCCcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh
Q 005467 422 EKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 422 ~rl~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+.+.+++..+++++ +..+.+...+.|+++||++. + +++|+|+||+|++||++||+||||||||||+++|+|+
T Consensus 15 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~nls~~--~---~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 15 EGFGELLEKAKQEN---NDRKHSSDDNNLFFSNLCLV--G---APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHhcccccc---cccccCCCCCeEEEEEEEEe--c---ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667776654432 12222334457999999995 2 3599999999999999999999999999999999999
Q ss_pred hcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccc
Q 005467 502 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 581 (695)
Q Consensus 502 y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT 581 (695)
++|++|+|.+|| .|+|++|++.+|++|++||+.++. ...+.++.++++.+++.+.+..+|++++|
T Consensus 87 ~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 87 LEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred CCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhccc--ccCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 999999999998 399999999999999999999873 23345667778888899999999999999
Q ss_pred cccc--cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHH-HhhhccccCcceEEEEeeecccccccCe
Q 005467 582 LVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDR 658 (695)
Q Consensus 582 ~vge--~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L-~~~~~~~~~~~TvIiIaHrlsti~~aD~ 658 (695)
.+++ ..||||||||++||||++++|++|||||||++||+++...+.+.+ ..+. +++|+|+|||+++.++.||+
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~----~~~tIiiisH~~~~~~~~d~ 227 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM----ANKTRILVTSKMEHLKKADK 227 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh----CCCEEEEEeCChHHHHhCCE
Confidence 9876 389999999999999999999999999999999999999888754 4442 35899999999999999999
Q ss_pred EEEeeCCeEEEeccchhhhhcCchhHHHH
Q 005467 659 IVVIDDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 659 IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
|++|++|++++.|+++++.+....|.+.+
T Consensus 228 i~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 228 ILILHEGSSYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred EEEEECCEEEEECCHHHHHhcchHHHHHH
Confidence 99999999999999999987666676554
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-46 Score=404.32 Aligned_cols=204 Identities=38% Similarity=0.523 Sum_probs=181.8
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH----HhhhccccCCceeee-
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----REKIGFVGQEPQLLQ- 539 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l----R~~I~~V~Qd~~LF~- 539 (695)
+.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|++||.++.+++...+ |+.||||+|++.+|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 469999999999999999999999999999999999999999999999999999988887 789999999999997
Q ss_pred eeccccccccCCc-CC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEecc
Q 005467 540 MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 614 (695)
Q Consensus 540 ~TI~eNI~~g~~~-~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEa 614 (695)
.||+|||.++... .. ..+++.++++.+++.+++...|. +||||||||++|||||+++|+||+||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~---------~LSGGq~QRV~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD---------ELSGGMQQRVGLARALAAEPDILLMDEA 156 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChh---------hCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5999999987310 11 23556777888888777766654 6999999999999999999999999999
Q ss_pred ccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhc
Q 005467 615 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 615 TSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
||+||+.+.+.+++.+.++.+ ..++|+|+|||++..+ +.||+|++|++|++++.|+++|++++
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~--~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQA--TLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999999998753 2368999999999976 56999999999999999999999875
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-46 Score=383.11 Aligned_cols=217 Identities=31% Similarity=0.517 Sum_probs=181.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999752 36999999999999999999999999999999999999999999999999998888888889999
Q ss_pred cccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHH
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARA 601 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARA 601 (695)
|++|++.+|. .|++||+.++.. ...+ ++++.++++..++.+ +..... .+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999996 699999987621 0111 122333333333321 001122 3799999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
++++|++|||||||++||+++.+.+.+.|.++.+ ..|+|+|++||+++.+. .||+|++|++|++++.|+++++.++
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~--~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQ--ELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--HcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998753 13689999999999765 5999999999999999999998754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-46 Score=387.95 Aligned_cols=220 Identities=34% Similarity=0.601 Sum_probs=189.7
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++|++++|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999642 24699999999999999999999999999999999999999999999999999887777889999
Q ss_pred ccccCCc--eeeeeeccccccccCCc-CCCch----hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 529 GFVGQEP--QLLQMDIKSNIMYGCPK-DVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 529 ~~V~Qd~--~LF~~TI~eNI~~g~~~-~~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
+||+|++ .++..|++|||.++... ..+.+ ++.++++..++.++..+.| ..||||||||++||||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~lara 156 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP---------QNLSGGQKQRVAIASV 156 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc---------ccCCHHHHHHHHHHHH
Confidence 9999998 45678999999986311 12222 3455667777766665544 4799999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
++++|++|||||||++||+.+.+.+.+.|.++.+. .++|+|++||+++.+..||+|++|++|++++.|+.+++.+..
T Consensus 157 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 157 LALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT--RKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999999999987431 248999999999998889999999999999999999887643
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=388.50 Aligned_cols=219 Identities=29% Similarity=0.490 Sum_probs=190.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++...+...+++.++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999643 35999999999999999999999999999999999999999999999999998777778889999
Q ss_pred cccCCc--eeeeeeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 530 FVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 530 ~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
||+|++ .+|+.|+.||+.++.. ...+. +++.++++..++.++....| ..||||||||++|||||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrl~laraL 152 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP---------HHLSGGEKKRVAIAGVI 152 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHHHHHHH
Confidence 999997 4788999999987621 12222 34566777777777666555 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhcCc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKGR 681 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~~g 681 (695)
+.+|++|||||||++||+.+.+.+.+.|.++.+. .++|+|++||+++.+. .||+|++|++|++++.|+++|+++...
T Consensus 153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~--~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~ 230 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET--YGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCHH
Confidence 9999999999999999999999999999987531 3689999999999984 699999999999999999999986543
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=390.65 Aligned_cols=221 Identities=33% Similarity=0.493 Sum_probs=187.2
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH----Hh
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----RE 526 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l----R~ 526 (695)
.++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 56788888864 369999999999999999999999999999999999999999999999999987765543 46
Q ss_pred hhccccCCceeee-eeccccccccCC-----cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~-----~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
+++||+|++.+|. .|++|||.++.. ....++++.++++..++.+++...|. .||||||||++|||
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~Gq~qrv~lAr 173 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD---------ELSGGMQQRVGLAR 173 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcc---------cCCHHHHHHHHHHH
Confidence 7999999999985 699999987521 01123456677777787777666653 69999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|++++|++|||||||++||+++.+.+.+.|.++.+ ..|+|+|++||+++.+. .||+|++|++|++++.|+++|+++.
T Consensus 174 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~--~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 174 ALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA--ELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999998753 13689999999999875 5999999999999999999999864
Q ss_pred -CchhHH
Q 005467 680 -GRLYAK 685 (695)
Q Consensus 680 -~g~Y~~ 685 (695)
...|.+
T Consensus 252 ~~~~~~~ 258 (269)
T cd03294 252 PANDYVR 258 (269)
T ss_pred cCcHHHH
Confidence 334443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-46 Score=380.11 Aligned_cols=225 Identities=33% Similarity=0.523 Sum_probs=184.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+... ++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999964 36999999999999999999999999999999999999999999999999988766544 45899
Q ss_pred cccCCcee-eeeeccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcC
Q 005467 530 FVGQEPQL-LQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 530 ~V~Qd~~L-F~~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~ 605 (695)
|++|++.+ +..|++||+.++.. ...+.++.. ..+.++++.+ |++..... ..||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999987 56899999987621 112222211 1223344433 44433333 37999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCc--hh
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGR--LY 683 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g--~Y 683 (695)
|++|||||||++||+++.+.+.+.|.++.+. +++|+|++||+++.+..||+|++|++|++++.|+++++.+..+ .+
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRD--QGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGALGGADL 228 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHHcCcccH
Confidence 9999999999999999999999999987431 3689999999999998899999999999999999999987632 34
Q ss_pred HHHH
Q 005467 684 AKLV 687 (695)
Q Consensus 684 ~~l~ 687 (695)
.+.|
T Consensus 229 ~~~~ 232 (236)
T TIGR03864 229 EAAF 232 (236)
T ss_pred HHHH
Confidence 4444
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-46 Score=377.28 Aligned_cols=209 Identities=27% Similarity=0.473 Sum_probs=176.0
Q ss_pred EEEEEEeeecCCCCc-cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
|+++||+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.. ....+|+.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999975311 169999999999999999999999999999999999999999999999999875 345778899
Q ss_pred ccccCCceeeee-eccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
+|++|++.+|.. |++||+.+... ...+ ++++.++++..++.+.....+ ..||||||||++||||+
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral 151 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV---------GGFSTGMRQKVAIARAL 151 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh---------hhcCHHHHHHHHHHHHH
Confidence 999999999985 99999987521 1112 234455556655554443322 37999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
+.+|++|||||||++||+++.+.+.+.|.++.+ +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRA---LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999998743 36899999999998764 9999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=389.53 Aligned_cols=222 Identities=31% Similarity=0.532 Sum_probs=192.0
Q ss_pred eEEEEEEeeecCCCC---ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch-hHHH
Q 005467 449 HVQFVNISFHYPSRP---TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWL 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~---~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~-~~~l 524 (695)
-|+++||+|+|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997431 246999999999999999999999999999999999999999999999999987653 3567
Q ss_pred HhhhccccCCc--eeeeeeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 525 REKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 525 R~~I~~V~Qd~--~LF~~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
|+.+|||+|++ .+|..|+.||+.++... ..+ ++++.++++.+++.++..+.| ..||||||||++
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LS~G~~qrv~ 154 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP---------HLLSGGQKQRVA 154 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc---------ccCCHHHHHHHH
Confidence 88999999998 47777999999987210 112 345677788888888777665 369999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||++++|++|||||||++||+.+...+.+.|.++.+ ..|+|+|+|||+++.+..||++++|++|+|++.|+++++.
T Consensus 155 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 155 IAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNK--KYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--hcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999998743 1368999999999999889999999999999999999997
Q ss_pred hcCc
Q 005467 678 HKGR 681 (695)
Q Consensus 678 ~~~g 681 (695)
.+..
T Consensus 233 ~~~~ 236 (280)
T PRK13633 233 KEVE 236 (280)
T ss_pred cChH
Confidence 6543
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-46 Score=376.36 Aligned_cols=212 Identities=26% Similarity=0.424 Sum_probs=181.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 579999999964 3699999999999999999999999999999999999999999999999988653 356788999
Q ss_pred cccCCceeeee-eccccccccCC-cCC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~-~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+|.. |++||+.++.. ... .++++.++++..++.++....| ..||||||||++||||++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~la~al~ 147 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV---------KTYSGGMRRRLEIARSLV 147 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 99999998874 99999987521 011 1335566777777766554433 369999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhh
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eL 676 (695)
.+|++|||||||++||+++.+.+.+.|.++.+. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE--FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999987532 26899999999999865 999999999999999998775
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-46 Score=384.37 Aligned_cols=219 Identities=31% Similarity=0.491 Sum_probs=183.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC-----CceEEEcCccCC--cchh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLT--DLDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-----~G~I~idG~di~--~i~~ 521 (695)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999974 36999999999999999999999999999999999999974 999999999987 4555
Q ss_pred HHHHhhhccccCCceeeee-eccccccccCC-cCC--C----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQM-DIKSNIMYGCP-KDV--K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~-TI~eNI~~g~~-~~~--~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQk 593 (695)
..+|+.++||+|++.+|.. |+.||+.++.. .+. . ++++.++++..++.+++... .+.. -..||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LS~G~~ 155 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDR---LNDY--PSNLSGGQR 155 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhh---hccC--hhhCCHHHH
Confidence 6788899999999999975 99999987621 111 1 13445556665554433211 1111 137999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++++|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK----EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh----CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999998742 4899999999999764 99999999999999999
Q ss_pred chhhhhc
Q 005467 673 HAELLHK 679 (695)
Q Consensus 673 h~eLl~~ 679 (695)
++++.+.
T Consensus 232 ~~~~~~~ 238 (253)
T PRK14267 232 TRKVFEN 238 (253)
T ss_pred HHHHHhC
Confidence 9999765
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=384.07 Aligned_cols=225 Identities=24% Similarity=0.437 Sum_probs=193.0
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999964 36999999999999999999999999999999999999999999999999998888788888999
Q ss_pred cccCCceeeee-eccccccccCCc---------CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~~---------~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
||+|++.+|.+ |+.||+.++... ...++++.++++..++.++.+..| ..||||||||++||
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la 150 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL---------TDLSGGQRQRAFLA 150 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc---------ccCCHHHHHHHHHH
Confidence 99999998876 999999886210 112334566677777765554433 36999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
||++++|++|||||||++||+++.+.+.+.|.++.+ +++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 151 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~---~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 151 MVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT---QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999999988743 3689999999999986 599999999999999999999875
Q ss_pred cCchhHHHHhhh
Q 005467 679 KGRLYAKLVKRQ 690 (695)
Q Consensus 679 ~~g~Y~~l~~~q 690 (695)
. ..+.+.+..+
T Consensus 228 ~-~~~~~~~~~~ 238 (255)
T PRK11231 228 P-GLLRTVFDVE 238 (255)
T ss_pred H-HHHHHHhCCC
Confidence 3 4566666443
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-46 Score=373.79 Aligned_cols=201 Identities=34% Similarity=0.552 Sum_probs=175.0
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcc
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (695)
+++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ..+|+.|+|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 478999999742 369999999999999999999999999999999999999999999999998754 456788999
Q ss_pred ccCCc--eeeeeeccccccccCCc-CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc
Q 005467 531 VGQEP--QLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 531 V~Qd~--~LF~~TI~eNI~~g~~~-~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ 607 (695)
++|++ .+|+.|++||+.++... ...++++.++++..++.++....|. .||||||||++||||++++|+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~G~~qrv~laral~~~p~ 146 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPL---------SLSGGQKQRLAIAAALLSGKD 146 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCch---------hCCHHHHHHHHHHHHHHhCCC
Confidence 99997 47789999999986321 1123467788888888777666553 699999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 668 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv 668 (695)
+|+|||||++||+++.+.+.+.|++..+ +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 147 LLIFDEPTSGLDYKNMERVGELIRELAA---QGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999988743 36899999999999864 9999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-46 Score=377.41 Aligned_cols=207 Identities=38% Similarity=0.514 Sum_probs=172.2
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH----H
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW----L 524 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~----l 524 (695)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997421 136999999999999999999999999999999999999999999999999998776432 4
Q ss_pred HhhhccccCCceeeee-eccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 525 REKIGFVGQEPQLLQM-DIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~~-TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
|+.++||+|++.+|.+ |++||+.++... ... ++++.++++..++.++....| .+||||||||++|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l 151 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP---------SELSGGQQQRVAI 151 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcCh---------hhcCHHHHHHHHH
Confidence 5789999999999976 999999986311 111 223444555555444333322 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeE
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 667 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~I 667 (695)
|||++.+|++|||||||++||+++.+.+.+.|.++.+. .++|+|+|||+++.+..||+|++|++|++
T Consensus 152 a~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 152 ARALANDPKIILADEPTGNLDSETGKEVMELLRELNKE--AGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999999987531 36899999999999889999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=391.71 Aligned_cols=219 Identities=27% Similarity=0.452 Sum_probs=182.5
Q ss_pred eEEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc--------
Q 005467 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-------- 518 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~-------- 518 (695)
.|+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 389999999997532 1359999999999999999999999999999999999999999999999887632
Q ss_pred ----------------chhHHHHhhhccccCCc--eeeeeeccccccccCC-cCCCc----hhHHHHHHHhhHh-HhHhc
Q 005467 519 ----------------LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVH-EFILS 574 (695)
Q Consensus 519 ----------------i~~~~lR~~I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~-~fI~~ 574 (695)
.+...+|+.||||+|++ .+|..|+.|||.++.. ...+. +++.++++.+++. ++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 13457889999999986 6888999999998731 12233 3345555555553 33322
Q ss_pred CCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-
Q 005467 575 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI- 653 (695)
Q Consensus 575 LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti- 653 (695)
-| ..||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ .|+|+|+|||+++.+
T Consensus 162 ~~---------~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivtHd~~~~~ 229 (305)
T PRK13651 162 SP---------FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK---QGKTIILVTHDLDNVL 229 (305)
T ss_pred Ch---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeeCHHHHH
Confidence 22 37999999999999999999999999999999999999999999998753 368999999999976
Q ss_pred cccCeEEEeeCCeEEEeccchhhhhc
Q 005467 654 KAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 654 ~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+.||||++|++|+|++.|+.+|+.++
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHhcC
Confidence 56999999999999999999998765
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=385.95 Aligned_cols=225 Identities=30% Similarity=0.452 Sum_probs=193.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999974 3699999999999999999999999999999999999999999999999999888888889999
Q ss_pred ccccCCceeee-eeccccccccCCc---------CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~---------~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
+||+|++.+|. .|+.||+.++... ...++++.++++.+++.+++...| ..||||||||++|
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~l 158 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV---------DSLSGGERQRAWI 158 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc---------ccCCHHHHHHHHH
Confidence 99999987665 5999999876210 112345667777777766655544 3699999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|||++.+|++|||||||++||.++.+.+.+.|.++.+. .++|+|+|||+++.+. .||+|++|++|+|++.|+.+|+.
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~--~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE--RGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999987531 3689999999999985 59999999999999999999987
Q ss_pred hcCchhHHHHh
Q 005467 678 HKGRLYAKLVK 688 (695)
Q Consensus 678 ~~~g~Y~~l~~ 688 (695)
.. ..+.+++.
T Consensus 237 ~~-~~~~~~~~ 246 (265)
T PRK10575 237 RG-ETLEQIYG 246 (265)
T ss_pred CH-HHHHHHhC
Confidence 63 34455553
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=373.47 Aligned_cols=204 Identities=27% Similarity=0.467 Sum_probs=176.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+|+|++ .++|+|+||+|++| ++||+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999964 36999999999999 99999999999999999999999999999999999998776 67889999
Q ss_pred cccCCceeeee-eccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+|.+ |++||+.+... ...+ ++++.++++..++.++.+..| ..||||||||++||||++
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~ 146 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI---------GSLSGGMRRRVGIAQALV 146 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch---------hhCCHHHHHHHHHHHHHh
Confidence 99999999985 99999987421 1111 234566677777665543322 369999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+. .||++++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 147 GDPSILIVDEPTAGLDPEERIRFRNLLSELGE----DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC----CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999998743 489999999999986 59999999999999875
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-46 Score=404.95 Aligned_cols=223 Identities=24% Similarity=0.425 Sum_probs=195.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999974 4699999999999999999999999999999999999999999999999999999988999999
Q ss_pred ccccCCcee-eeeeccccccccCCc---------CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 529 GFVGQEPQL-LQMDIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 529 ~~V~Qd~~L-F~~TI~eNI~~g~~~---------~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
|||+|++.+ |+.|++||+.+++.+ ..+++++.++++.+++.++.++.+ ..||||||||++|
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~---------~~LSgGerQRv~I 150 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV---------TSLSGGERQRVLL 150 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHH
Confidence 999999987 678999999987421 122346777888888877665432 3699999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||+++|++|||||||++||..+...+++.|+++.+ +++|+|+++|+++.+. .||||++|++|++++.|+++|++
T Consensus 151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~---~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD---DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999998853 3689999999999994 59999999999999999999987
Q ss_pred hcCchhHHHH
Q 005467 678 HKGRLYAKLV 687 (695)
Q Consensus 678 ~~~g~Y~~l~ 687 (695)
... ...++|
T Consensus 228 ~~~-~l~~~~ 236 (402)
T PRK09536 228 TAD-TLRAAF 236 (402)
T ss_pred CcH-HHHHHh
Confidence 643 344444
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=372.21 Aligned_cols=205 Identities=26% Similarity=0.439 Sum_probs=179.4
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+. ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 579999999964 3699999999999999999999999999999999999999999999999988765 56788999
Q ss_pred cccCCceee-eeeccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc
Q 005467 530 FVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 530 ~V~Qd~~LF-~~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ 607 (695)
||+|++.+| +.|++||+.++.. ...+++++.++++..++.+...+.| ..||||||||++||||++++|+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKV---------KGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 999999888 5799999987621 1234567777888888876655432 3699999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
+|||||||++||+++.+.+.+.|.+..+ +++|+|++||++..+.. ||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRD---QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999988743 36899999999999864 9999999999999875
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=385.35 Aligned_cols=219 Identities=32% Similarity=0.492 Sum_probs=185.9
Q ss_pred cceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCc--c
Q 005467 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--L 519 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~--i 519 (695)
.+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|++||.++.+ .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999974 3699999999999999999999999999999999999985 89999999999864 3
Q ss_pred hhHHHHhhhccccCCceeeeeeccccccccCC-cCC--C----chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCC
Q 005467 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV--K----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSG 590 (695)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~--~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSG 590 (695)
+...+|+.++||+|++.+|..|+.||+.++.. .+. + ++++.++++.+++.+++.. .... ..|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCH
Confidence 45678899999999999999999999987621 011 1 2345666777666544321 1122 37999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEE
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIE 669 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive 669 (695)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+. .||++++|++|++++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~----~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~ 242 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR----QNYTIVIVTHSMQQAARVSQRTAFFHLGNLVE 242 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh----cCCeEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999873 2479999999999985 599999999999999
Q ss_pred eccchhhhhc
Q 005467 670 VGNHAELLHK 679 (695)
Q Consensus 670 ~Gth~eLl~~ 679 (695)
.|+++++...
T Consensus 243 ~g~~~~~~~~ 252 (267)
T PRK14235 243 VGDTEKMFTN 252 (267)
T ss_pred eCCHHHHHhC
Confidence 9999999754
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=399.47 Aligned_cols=215 Identities=30% Similarity=0.492 Sum_probs=186.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++.+.+. .++.|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3889999999974 369999999999999999999999999999999999999999999999999987653 46789
Q ss_pred ccccCCceeee-eeccccccccCCc-----CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPK-----DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~-----~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
|||+|++.+|. .|++|||.|+... ..+ ++++.++++..++.++.+..| ..||||||||++|
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGq~QRval 147 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP---------AQLSGGQKQRVAL 147 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHH
Confidence 99999999996 6999999987311 112 235566677777766655544 3699999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||+++|++|+||||||+||+.+...+.+.|.++.+. .++|+|+|||+++.+. .||+|++|++|+|++.|+++|++
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE--LKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999987542 3689999999999865 59999999999999999999998
Q ss_pred hc
Q 005467 678 HK 679 (695)
Q Consensus 678 ~~ 679 (695)
.+
T Consensus 226 ~~ 227 (353)
T PRK10851 226 RE 227 (353)
T ss_pred hC
Confidence 75
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=384.65 Aligned_cols=220 Identities=31% Similarity=0.513 Sum_probs=187.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999753 24699999999999999999999999999999999999999999999999999888888899999
Q ss_pred ccccCCce--eeeeeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 529 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 529 ~~V~Qd~~--LF~~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
+||+|++. ++..|+++|+.++... ... ++++.++++..++.++.+..| ..||||||||++||||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~lara 156 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEP---------NALSGGQKQRVAIAGV 156 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCc---------ccCCHHHHHHHHHHHH
Confidence 99999984 4456889999886211 112 234455566666554443322 3799999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
++.+|++|||||||++||+.+.+.+.+.|.++.+ ..++|+|++||+++.+..||+|++|++|++++.|+++++....
T Consensus 157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 157 LALNPSVIILDEATSMLDPDARQNLLDLVRKVKS--EHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--hcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999999988743 1368999999999998889999999999999999999987654
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=374.77 Aligned_cols=208 Identities=32% Similarity=0.499 Sum_probs=172.5
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH---HH
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~---lR 525 (695)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999997421 136999999999999999999999999999999999999999999999999998776543 34
Q ss_pred -hhhccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 526 -EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 526 -~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
+.|+||+|++.+|. .|++||+.++.. ...+ ++++.++++..++++.....| ..||||||||++|
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~l 152 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP---------SELSGGERQRVAI 152 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHH
Confidence 67999999999995 699999987521 0111 123344445444443333322 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEE
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 668 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Iv 668 (695)
|||++++|++|||||||++||.++.+.+.+.|.++.++ .++|+|+|||+++.+..||+|++|++|+++
T Consensus 153 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 153 ARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRE--LNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999887531 368999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=381.99 Aligned_cols=216 Identities=31% Similarity=0.491 Sum_probs=183.9
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch---------
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--------- 520 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~--------- 520 (695)
|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999974 36999999999999999999999999999999999999999999999999887543
Q ss_pred ----hHHHHhhhccccCCceeee-eeccccccccCC--cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccC
Q 005467 521 ----IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS 589 (695)
Q Consensus 521 ----~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~--~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LS 589 (695)
...+|+.++||+|++.+|. .|+.||+.++.. .... ++++.++++..++.++..+.| ..||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS 148 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP---------AQLS 148 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh---------hhcC
Confidence 2467889999999999885 799999987521 0111 234455566666555544433 3699
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRII 668 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Iv 668 (695)
||||||++||||++++|++|||||||++||+++...+.+.|+++.+. .++|+|+|||++..+. .||++++|++|+++
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 149 GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE--HDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999987531 3689999999999985 59999999999999
Q ss_pred Eeccchhhhhc
Q 005467 669 EVGNHAELLHK 679 (695)
Q Consensus 669 e~Gth~eLl~~ 679 (695)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999999765
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=376.58 Aligned_cols=216 Identities=26% Similarity=0.486 Sum_probs=179.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH-Hhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l-R~~I 528 (695)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 579999999974 369999999999999999999999999999999999999999999999999887766554 5679
Q ss_pred ccccCCceeeee-eccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhc
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~ 604 (695)
+|++|++.+|.+ |++||+.++.. .....++.. ..+++.++.+ |++..... ..||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 99999987631 111111111 1223334433 34433333 3799999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
+|++|||||||++||+++.+.+.+.|+++.+ .++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKD---RGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999988743 3689999999998765 599999999999999999999865
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=386.25 Aligned_cols=219 Identities=34% Similarity=0.579 Sum_probs=191.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC---ceEEEcCccCCcchhHHHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~---G~I~idG~di~~i~~~~lR 525 (695)
.|+++|++|+|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++ |+|.+||.++...+...+|
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999753 2469999999999999999999999999999999999999998 8999999999877777788
Q ss_pred hhhccccCCc--eeeeeeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 526 EKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 526 ~~I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
++||||+|++ .+++.|+.|||.++.. ...+. +++.++++..++.++....| ..||||||||++|
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LS~G~~qrv~l 154 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP---------ANLSGGQKQRVAI 154 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc---------ccCCHHHHHHHHH
Confidence 9999999998 4678999999988621 12233 34666788888877766655 4799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||++.+|++|||||||++||..+...+.+.|.++.+ ..|+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 155 aral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKK--KNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH--hcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999988743 13689999999999998899999999999999999998865
Q ss_pred c
Q 005467 679 K 679 (695)
Q Consensus 679 ~ 679 (695)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 3
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=378.77 Aligned_cols=215 Identities=34% Similarity=0.552 Sum_probs=181.1
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc--hhHHHHhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--DIRWLREK 527 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i--~~~~lR~~ 527 (695)
|+++|++++|++ .++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|.+||.++.+. +...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999964 3699999999999999999999999999999999999999999999999998764 34577889
Q ss_pred hccccCCceeee-eeccccccccCC--cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~--~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
++|++|++.+|. .|++||+.++.. ...+. +++.++++..++.+.....| ..||||||||++|||
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~la~ 149 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP---------SELSGGQQQRVAIAR 149 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh---------hhcCHHHHHHHHHHH
Confidence 999999999886 699999987621 11122 22333444444433333222 379999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|++++|++|||||||++||.++...+.+.|.+..+ +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 150 ALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE---EGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999999988743 36899999999999864 999999999999999999998764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=377.98 Aligned_cols=219 Identities=25% Similarity=0.400 Sum_probs=180.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH-HHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~-lR~~ 527 (695)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++... +|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999964 36999999999999999999999999999999999999999999999999998877654 6778
Q ss_pred hccccCCceeeee-eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQRIaIARAll~~ 605 (695)
++||+|++.+|.+ |++||+.++. ...+.++..+.+ .+.++.++...++.-.. ..||||||||++||||++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~-~~~~~~~~~~~~-----~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGG-FFAERDQFQERI-----KWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhh-hccChhHHHHHH-----HHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999984 9999999863 222222222211 12222222111111111 37999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhc
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|+||||||||++||+++.+.+.+.|.++.+ +++|+|++||+++.+ +.||+|++|++|++++.|+++++...
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLRE---QGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999999998743 368999999999976 56999999999999999999999753
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=378.14 Aligned_cols=216 Identities=29% Similarity=0.468 Sum_probs=180.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC------cchhH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT------DLDIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~------~i~~~ 522 (695)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. ..+..
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999974 36999999999999999999999999999999999999999999999999873 23346
Q ss_pred HHHhhhccccCCceeee-eeccccccccCC--cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 523 WLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~--~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
.+|+.|+|++|++.+|. .|+.|||.++.. ...+. +++.++++..++.+++...| ..||||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qr 149 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP---------LHLSGGQQQR 149 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHH
Confidence 77889999999999997 499999975311 01121 22333444444444443333 3799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++++|++|||||||++||+++...+.+.|.++.+ +++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 v~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~ 226 (242)
T PRK11124 150 VAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred HHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999998743 36899999999999864 9999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++.+.
T Consensus 227 ~~~~~ 231 (242)
T PRK11124 227 CFTQP 231 (242)
T ss_pred HhcCc
Confidence 88654
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=373.34 Aligned_cols=206 Identities=33% Similarity=0.547 Sum_probs=175.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. ++.++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 579999999975 3699999999999999999999999999999999999999999999999998766543 46899
Q ss_pred cccCCceeee-eeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+|. .|++||+.++... ..+ ++++.++++..++.++....| ..||||||||++||||++
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qr~~laral~ 146 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP---------KQLSGGQRQRVALGRAIV 146 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999985 6999999876211 112 234455666666666555444 369999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
++|++|||||||++||+++.+.+.+.|+++.+. .++|+|+|||++..+.. ||+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR--LGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999987531 36899999999998765 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=375.71 Aligned_cols=209 Identities=33% Similarity=0.518 Sum_probs=177.1
Q ss_pred EEEEEEeeecCCCCc-cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
|+++|++++|++... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 578999999974211 369999999999999999999999999999999999999999999999998763 46789
Q ss_pred ccccCCceeee-eeccccccccCC-cCC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
+||+|++.+|. .|++||+.++.. ... .++++.++++..++.++....| ..||||||||++||||+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~la~al 146 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP---------HQLSGGMRQRVALARAL 146 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------ccCCHHHHHHHHHHHHH
Confidence 99999999997 699999987621 111 1345566677777666655544 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEee--CCeEEEeccch
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID--DGRIIEVGNHA 674 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~--~G~Ive~Gth~ 674 (695)
+++|++|||||||++||+.+.+.+.+.|.+..+ ..++|+|+|||+++.+. .||+|++|+ +|++++.++.+
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~--~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWR--ETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH--HcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999999999999999999988743 13689999999999875 599999999 79999988754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=384.79 Aligned_cols=216 Identities=29% Similarity=0.538 Sum_probs=185.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch-hHHHHhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~-~~~lR~~I 528 (695)
|+++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++..++ ...+++.|
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 6899999999642 36999999999999999999999999999999999999999999999999998765 36778899
Q ss_pred ccccCCce--eeeeeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 529 GFVGQEPQ--LLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 529 ~~V~Qd~~--LF~~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
|||+|++. ++..|+.|||.++... ..+ ++++.++++..++.+++...| ..||||||||++||||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~lara 150 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP---------KTLSGGQGQCVALAGI 150 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc---------ccCCHHHHHHHHHHHH
Confidence 99999985 6778999999886211 122 234555566666655554433 3799999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
++++|++|||||||++||+.+...+.+.|.++.+ +|+|+|++||+++.++.||+|++|++|++++.|+.+++...
T Consensus 151 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~---~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 151 LTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE---KGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999988742 36899999999999988999999999999999999988654
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=381.83 Aligned_cols=219 Identities=35% Similarity=0.567 Sum_probs=185.9
Q ss_pred cceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCc--c
Q 005467 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--L 519 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~--i 519 (695)
.+.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++.+ .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 456999999999964 369999999999999999999999999999999999996 589999999999853 4
Q ss_pred hhHHHHhhhccccCCceeeeeeccccccccCC--cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCc
Q 005467 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGG 591 (695)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~--~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGG 591 (695)
+...+|++|+||+|++.+|..|++||+.++.. ...+ ++++.++++.+++.+.+. ..... .+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 55678899999999999999999999988621 0122 234566666666543332 22222 379999
Q ss_pred cchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEe
Q 005467 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEV 670 (695)
Q Consensus 592 QkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~ 670 (695)
||||++||||++++|++|||||||++||.++++.+.+.|+++. +++|+|+|||++..+. .||+|++|++|++++.
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK----QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999883 2579999999999985 5999999999999999
Q ss_pred ccchhhhhc
Q 005467 671 GNHAELLHK 679 (695)
Q Consensus 671 Gth~eLl~~ 679 (695)
|+.+++...
T Consensus 237 g~~~~~~~~ 245 (260)
T PRK10744 237 GNTDTIFTK 245 (260)
T ss_pred CCHHHHHhC
Confidence 999999764
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=394.16 Aligned_cols=226 Identities=29% Similarity=0.453 Sum_probs=185.3
Q ss_pred eEEEEEEeeecCCCC----------ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc
Q 005467 449 HVQFVNISFHYPSRP----------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~----------~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~ 518 (695)
-|+++|++++|+.+. ..++++||||+|++||++||||+||||||||+++|+|+++|++|+|++||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999988
Q ss_pred chhHH---HHhhhccccCCc--eee-eeeccccccccCC---cCCCchhH----HHHHHHhhHh-HhHhcCCCCcccccc
Q 005467 519 LDIRW---LREKIGFVGQEP--QLL-QMDIKSNIMYGCP---KDVKNEDI----EWAAKQAYVH-EFILSLPCGYETLVD 584 (695)
Q Consensus 519 i~~~~---lR~~I~~V~Qd~--~LF-~~TI~eNI~~g~~---~~~~~eei----~~A~~~a~l~-~fI~~LP~G~dT~vg 584 (695)
++... +|++|+||+|++ .|| ..||.|||.++.. ++.+.++. .++++.+++. +.....|
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p-------- 159 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP-------- 159 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc--------
Confidence 86544 577899999998 477 4799999975411 12333333 3344444442 1222222
Q ss_pred ccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEee
Q 005467 585 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 663 (695)
Q Consensus 585 e~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~ 663 (695)
..||||||||++|||||+.+|++||+||||++||..+...|.+.|.++.+. .+.|+|+|||+++.+.. ||+|+||+
T Consensus 160 -~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 160 -HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE--MGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 379999999999999999999999999999999999999999999988542 36899999999999975 99999999
Q ss_pred CCeEEEeccchhhhhc-CchhHH
Q 005467 664 DGRIIEVGNHAELLHK-GRLYAK 685 (695)
Q Consensus 664 ~G~Ive~Gth~eLl~~-~g~Y~~ 685 (695)
+|+|+|.|+.+++.++ ...|.+
T Consensus 237 ~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 237 LGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CCEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999875 334544
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=380.41 Aligned_cols=219 Identities=29% Similarity=0.501 Sum_probs=185.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCcchhHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~i~~~~ 523 (695)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+++...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999974 3699999999999999999999999999999999999984 6999999999998888888
Q ss_pred HHhhhccccCCceee-eeeccccccccCCc-C------CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 524 LREKIGFVGQEPQLL-QMDIKSNIMYGCPK-D------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 524 lR~~I~~V~Qd~~LF-~~TI~eNI~~g~~~-~------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
+|+.||||+|++.+| +.|++||+.++... . ..++++.++++..++.+.+.. .+++.+ ..||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~~--~~LSgG~~qr 154 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLDAPA--GKLSGGQQQR 154 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhcCCc--ccCCHHHHHH
Confidence 899999999999755 67999999876311 1 012345566666666443321 122221 3799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++++|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 155 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 155 LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK----KDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999873 3589999999999985 59999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++.+.
T Consensus 231 ~~~~~ 235 (250)
T PRK14247 231 EVFTN 235 (250)
T ss_pred HHHcC
Confidence 99765
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=400.31 Aligned_cols=215 Identities=32% Similarity=0.487 Sum_probs=190.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999974 3699999999999999999999999999999999999999999999999999876653 5789
Q ss_pred ccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.||. .|++|||.|+.. ...+ ++++.++++..++.++.+..|. .||||||||+||||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~---------~LSgGq~QRVaLARaL 159 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH---------QLSGGQQQRVAIARAV 159 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChh---------hCCHHHHHHHHHHHHH
Confidence 99999999995 599999998731 1112 3456778888888888777773 6999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+++|++|+||||||+||..+...+.+.|+++.+. .|.|+|+|||++..+. .||+|++|++|+|++.|++++++.+
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~--~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRK--LGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988542 3689999999999864 5999999999999999999999875
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=377.08 Aligned_cols=220 Identities=25% Similarity=0.461 Sum_probs=179.8
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH-Hhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l-R~~I 528 (695)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.... |+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999974 369999999999999999999999999999999999999999999999999987766544 4579
Q ss_pred ccccCCceeeee-eccccccccCCcCCCc-hh---HHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHH
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCPKDVKN-ED---IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARA 601 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~-ee---i~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARA 601 (695)
+|++|++.+|.+ |++||+.++...+... .. .........++++++.+ |++..... ..||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999986 9999998863211000 00 00001112233344432 33333332 3799999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
++.+|++|+|||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG----KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc----CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 9999999999999999999999999999998743 4899999999999865 99999999999999999999875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=384.19 Aligned_cols=226 Identities=22% Similarity=0.363 Sum_probs=185.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH---HHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~---~lR 525 (695)
-|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999964 3699999999999999999999999999999999999999999999999998776543 357
Q ss_pred hhhccccCCceeeee-eccccccccCCc--CCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 526 EKIGFVGQEPQLLQM-DIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~-TI~eNI~~g~~~--~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
+.++||+|++.+|.+ |+.||+.++... ..+. +++.++++..++.+.....| ..||||||||++|
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrv~l 154 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP---------SELSGGMARRAAL 154 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHH
Confidence 789999999999986 999999875211 1122 12333444444433322211 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|||++++|++|||||||++||+++.+.+.+.|.++.+ ..|+|+|+|||++..+.. ||+|++|++|++++.|+++++.
T Consensus 155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNS--ALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH--hcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999998753 136899999999998865 9999999999999999999998
Q ss_pred hcC-chhHHHHh
Q 005467 678 HKG-RLYAKLVK 688 (695)
Q Consensus 678 ~~~-g~Y~~l~~ 688 (695)
+.. ..++.++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 652 34455553
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=399.34 Aligned_cols=217 Identities=29% Similarity=0.460 Sum_probs=189.6
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC--ceEEEcCccCCcchhHHHH
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD--GQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~--G~I~idG~di~~i~~~~lR 525 (695)
++|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+||.++.+.+. .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 57999999999974 369999999999999999999999999999999999999999 999999999977654 36
Q ss_pred hhhccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
+.||||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++.++.|. .||||||||+|||
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~---------~LSgGq~QRvaLA 149 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA---------QLSGGMQQRIAIA 149 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChh---------hCCHHHHHHHHHH
Confidence 78999999999995 599999998731 1122 2356667777787777766663 6999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+++|++|+||||||+||+.+...+.+.|.++.+. ..|.|+|+|||+++.+. .||+|++|++|++++.|+.+|+.+
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~-~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEE-LPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999987542 12689999999999875 599999999999999999999987
Q ss_pred c
Q 005467 679 K 679 (695)
Q Consensus 679 ~ 679 (695)
+
T Consensus 229 ~ 229 (362)
T TIGR03258 229 A 229 (362)
T ss_pred C
Confidence 5
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=378.78 Aligned_cols=218 Identities=33% Similarity=0.517 Sum_probs=179.0
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch--------
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-------- 520 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~-------- 520 (695)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3899999999974 36999999999999999999999999999999999999999999999999986532
Q ss_pred hHHHHhhhccccCCceeee-eeccccccccCC--cCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchh
Q 005467 521 IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQR 595 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~--~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQR 595 (695)
...+|+.++||+|++.+|. .|++||+.++.. .....++..+ .+++.++.+ |++..... ..||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 3567889999999999886 799999987521 1112222111 112233322 23222222 3799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++.+|++|||||||++||+++.+.+.+.|.++.+ +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ---EKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999988743 36899999999999865 9999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++.+.
T Consensus 230 ~~~~~ 234 (250)
T PRK11264 230 ALFAD 234 (250)
T ss_pred HHhcC
Confidence 98764
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=371.94 Aligned_cols=203 Identities=35% Similarity=0.537 Sum_probs=175.4
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh---HHHHh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~---~~lR~ 526 (695)
|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++. ..+|+
T Consensus 2 l~~~~l~~~~~~~--~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPGG--VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCCC--ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 6899999999532 469999999999999999999999999999999999999999999999999987654 34678
Q ss_pred hhccccCCceeee-eeccccccccCC-----cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~-----~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
.++|++|++.+|. .|++||+.++.. +...++++.++++..++.++....| ..||||||||++|||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP---------EQLSGGEQQRVAIAR 150 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh---------hhCCHHHHHHHHHHH
Confidence 9999999999996 699999987521 1112345667777777766655544 369999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCe
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 666 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~ 666 (695)
|++++|++|||||||++||+++...+.+.|+++.+ +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK---RGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999998743 36899999999999875 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=371.28 Aligned_cols=203 Identities=38% Similarity=0.628 Sum_probs=173.4
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcc
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (695)
+++||+++|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999752 1469999999999999999999999999999999999999999999999999988877888999999
Q ss_pred ccCCc--eeeeeeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 531 VGQEP--QLLQMDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 531 V~Qd~--~LF~~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
++|++ .+++.|++||+.++... ..+ ++++.++++..++.+++...| ..||||||||++||||++
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~laral~ 150 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP---------FTLSGGQKQRVAIAGVLA 150 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHHHHHHHHHHHHh
Confidence 99998 36788999999876211 112 234455666666655544433 369999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCe
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 666 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~ 666 (695)
++|++|||||||++||+++.+.+.+.|.+..+ +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKA---EGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999988753 36899999999999977 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-45 Score=373.65 Aligned_cols=213 Identities=27% Similarity=0.426 Sum_probs=177.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH-HHhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~-lR~~I 528 (695)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+... +++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 579999999974 36999999999999999999999999999999999999999999999999998876554 46789
Q ss_pred ccccCCceeeee-eccccccccCCcC-CCchh-HHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhh
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCPKD-VKNED-IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~~~-~~~ee-i~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll 603 (695)
+|++|++.+|.. |++||+.++.... ..+++ ..++++..+ +++..... ..||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 9999999873211 11111 222333322 11111122 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhh
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl 677 (695)
++|++|||||||++||+.+.+.+.+.|.+..+. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE--GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc--CCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 999999999999999999999999999987531 36899999999999875 9999999999999999999983
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-45 Score=379.91 Aligned_cols=217 Identities=30% Similarity=0.457 Sum_probs=182.7
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc--------
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-------- 519 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i-------- 519 (695)
+.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999974 3699999999999999999999999999999999999999999999999988642
Q ss_pred -----hhHHHHhhhccccCCceeee-eeccccccccCC--cCCC----chhHHHHHHHhhHhHhH-hcCCCCcccccccc
Q 005467 520 -----DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEFI-LSLPCGYETLVDDD 586 (695)
Q Consensus 520 -----~~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~--~~~~----~eei~~A~~~a~l~~fI-~~LP~G~dT~vge~ 586 (695)
....+|+.++||+|++.+|. .|++||+.++.. .... ++++.++++..++.++. ... -.
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~ 151 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKY---------PV 151 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCC---------cc
Confidence 23567889999999999997 599999987510 0111 22344455555554432 111 13
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCC
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 665 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G 665 (695)
.||||||||++|||||+++|++|||||||++||+++.+.+.+.|.++.+ +|+|+|+|||+++.+.. ||+|++|++|
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivsH~~~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE---EGKTMVVVTHEMGFARHVSSHVIFLHQG 228 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 7999999999999999999999999999999999999999999998743 36999999999999986 9999999999
Q ss_pred eEEEeccchhhhhc
Q 005467 666 RIIEVGNHAELLHK 679 (695)
Q Consensus 666 ~Ive~Gth~eLl~~ 679 (695)
++++.|+++++.+.
T Consensus 229 ~i~~~~~~~~~~~~ 242 (257)
T PRK10619 229 KIEEEGAPEQLFGN 242 (257)
T ss_pred EEEEeCCHHHhhhC
Confidence 99999999999764
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=371.45 Aligned_cols=204 Identities=32% Similarity=0.542 Sum_probs=174.0
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh---HHHHh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLRE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~---~~lR~ 526 (695)
|+++||+++|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 5789999999743 369999999999999999999999999999999999999999999999999887653 35788
Q ss_pred hhccccCCceeee-eeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
.++||+|++.+|. .|++||+.++... ..+ ++++.++++..++.+.....| ..||||||||++|||
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar 149 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP---------AELSGGEQQRVAIAR 149 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh---------hhcCHHHHHHHHHHH
Confidence 9999999999998 5999999876211 111 234556666666655544433 369999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeE
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 667 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~I 667 (695)
|++++|++|||||||++||+++.+.+.+.|+++.+ +++|+|+|||++..+.. ||+|++|++|++
T Consensus 150 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~---~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 150 AIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK---AGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998743 36899999999999875 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=385.70 Aligned_cols=218 Identities=29% Similarity=0.471 Sum_probs=180.4
Q ss_pred EEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc----hhHH
Q 005467 450 VQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIRW 523 (695)
Q Consensus 450 I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i----~~~~ 523 (695)
|+++||+|+|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997532 13699999999999999999999999999999999999999999999999998764 3467
Q ss_pred HHhhhccccCCc--eeeeeeccccccccCC-cCCCchhH----HHHHHHhhHhH-hHhcCCCCccccccccccCCccchh
Q 005467 524 LREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNEDI----EWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 524 lR~~I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~eei----~~A~~~a~l~~-fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
+|+.|+|++|++ .+|+.|++|||.++.. ...+.++. .++++..++.+ +.. .. -..||||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~--~~~LSgG~~qr 153 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFE-------KN--PFELSGGQMRR 153 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-------CC--cccCCHHHHHH
Confidence 888999999997 6888999999987621 11233332 22333333321 111 11 13799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++++|++|||||||++||+++.+.+.+.|.++.+ +++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 154 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (280)
T PRK13649 154 VAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ---SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999998743 3689999999999885 59999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++.+.
T Consensus 231 ~~~~~ 235 (280)
T PRK13649 231 DIFQD 235 (280)
T ss_pred HHhcC
Confidence 98764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=378.74 Aligned_cols=218 Identities=32% Similarity=0.558 Sum_probs=183.2
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCc--ch
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LD 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~--i~ 520 (695)
+.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 56999999999974 3699999999999999999999999999999999999863 69999999999875 34
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCC-cCC-----CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCcc
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~-----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQ 592 (695)
...+|+.++||+|++.+|+.|+.||+.++.. ... .++++.++++.+++.+.+.. .... ..|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHHH
Confidence 5678889999999999999999999998621 111 12344555555555433321 1222 3799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
|||++||||++.+|++|||||||++||+.+...+.+.|.++. +++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK----KDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFG 227 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999873 3589999999999875 49999999999999999
Q ss_pred cchhhhhc
Q 005467 672 NHAELLHK 679 (695)
Q Consensus 672 th~eLl~~ 679 (695)
+++++...
T Consensus 228 ~~~~~~~~ 235 (250)
T PRK14240 228 DTVDLFTN 235 (250)
T ss_pred CHHHHHhC
Confidence 99998754
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-45 Score=369.61 Aligned_cols=209 Identities=27% Similarity=0.451 Sum_probs=185.0
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh----HHHHh
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWLRE 526 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~----~~lR~ 526 (695)
.+.|++|+|+++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999854 469999999999999999999999999999999999999999999999998876542 34567
Q ss_pred hhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhc
Q 005467 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILR 604 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~ 604 (695)
.++|++|++.+|+.|++|||.++. ..++++..++++..++.+++..+|.|++|.++.. .||||||||++||||+++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGS--PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcC--cCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 899999999999999999999873 2345667788899999999999999999998863 899999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhh--HHHhhhccccCcceEEEEeeecccccccCeEEEeeCCe
Q 005467 605 DPAILLLDEATSALDSESEHYVKG--VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~--~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~ 666 (695)
+|++|||||||++||.++.+.+.+ .+..+.+ .++|+|++||+++.++.||++++|++|+
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~---~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD---DKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc---CCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999998887 4444422 3689999999999999999999999984
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-45 Score=382.31 Aligned_cols=216 Identities=28% Similarity=0.427 Sum_probs=182.1
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC--cchhHHHHhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLREK 527 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~--~i~~~~lR~~ 527 (695)
|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++. +.+...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999964 36999999999999999999999999999999999999999999999999984 3344677889
Q ss_pred hccccCCce--eeeeeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 528 IGFVGQEPQ--LLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 528 I~~V~Qd~~--LF~~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
|+||+|++. +|..|+.+|+.++.. ...+. +++.++++..++.++....+ ..||||||||++|||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrl~lar 149 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPI---------QCLSHGQKKRVAIAG 149 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCc---------hhCCHHHHHHHHHHH
Confidence 999999985 677899999987521 11222 23445566666655433211 379999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|++.+|++|||||||++||+++...+.+.|.++.+ +|+|+|+|||++..+. .||+|++|++|++++.|+++++...
T Consensus 150 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 150 ALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA---QGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998743 3689999999999985 4999999999999999999998765
Q ss_pred C
Q 005467 680 G 680 (695)
Q Consensus 680 ~ 680 (695)
.
T Consensus 227 ~ 227 (271)
T PRK13638 227 T 227 (271)
T ss_pred h
Confidence 4
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=380.13 Aligned_cols=219 Identities=30% Similarity=0.459 Sum_probs=182.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc--C---CCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~--p---~~G~I~idG~di~~--i~~ 521 (695)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999974 369999999999999999999999999999999999997 3 59999999999863 345
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-C-CCch----hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D-VKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~-~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
..+|+.+|||+|++.+|..|++||+.++... . .+++ ++.++++..++.+++..+ +++. -..||||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---l~~~--~~~LS~Gq~qr 163 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDR---LHTQ--ALSLSGGQQQR 163 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhh---hhCC--cccCCHHHHHH
Confidence 5778899999999999999999999886211 1 1122 234445555554433211 1111 13799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++++|++|+|||||++||+++...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK----EKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999874 3589999999999985 59999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++.++
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 98764
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=399.24 Aligned_cols=215 Identities=31% Similarity=0.491 Sum_probs=186.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 4899999999964 369999999999999999999999999999999999999999999999999987654 35689
Q ss_pred ccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.+|. .|++|||.++.. ...+ ++++.++++..++.++.+..| ..||||||||++|||||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~---------~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTL 148 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999996 599999998731 1122 234666777777766655544 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+++|++|+||||||+||+++.+.+.+.|+++.+. .+.|+|+|||+++.+. .||+|++|++|+|++.|+++|+..+
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--hCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999887532 3689999999999875 5999999999999999999999764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=378.42 Aligned_cols=220 Identities=31% Similarity=0.492 Sum_probs=181.7
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~--i~~ 521 (695)
.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999964 369999999999999999999999999999999999997 479999999998854 345
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCC-cCCC-----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~~-----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
..+|+.++||+|++.+|+.|++||+.++.. .... ++++.++++..++++.. +..++.. -..||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~--~~~LS~Gq~qr 155 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDNLDRN--AQAFSGGQQQR 155 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHHhccC--hhhCCHHHHHH
Confidence 567889999999999999999999987621 0111 22344455555543211 1111111 13899999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++++|++|||||||++||+++...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 156 ~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 231 (251)
T PRK14251 156 ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK----HQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTE 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH----cCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999873 24899999999999765 9999999999999999999
Q ss_pred hhhhcC
Q 005467 675 ELLHKG 680 (695)
Q Consensus 675 eLl~~~ 680 (695)
++....
T Consensus 232 ~~~~~~ 237 (251)
T PRK14251 232 EMFIAP 237 (251)
T ss_pred HHHhCC
Confidence 997543
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=380.97 Aligned_cols=227 Identities=30% Similarity=0.428 Sum_probs=183.1
Q ss_pred EEEEEEeeecCCC------CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH
Q 005467 450 VQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 450 I~f~nVsF~Y~~~------~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~ 523 (695)
|+++||+|+|++. .++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 1246999999999999999999999999999999999999999999999999998776543
Q ss_pred ---HHhhhccccCCce--ee-eeeccccccccCC--cCCC----chhHHHHHHHhhHh-HhHhcCCCCccccccccccCC
Q 005467 524 ---LREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSG 590 (695)
Q Consensus 524 ---lR~~I~~V~Qd~~--LF-~~TI~eNI~~g~~--~~~~----~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~~LSG 590 (695)
+|+.|+||+|++. ++ ..|++|||.++.. .... ++++.++++..++. +..+. . -..|||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-------~--~~~LSg 153 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADK-------L--PRQLSG 153 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhC-------C--hhhCCH
Confidence 6788999999973 44 4799999975411 0111 22334444444432 11111 1 137999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEE
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIE 669 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive 669 (695)
|||||++||||++.+|++|||||||++||++++..+.+.|.++.+. .|+|+|+|||++..+. .||+|++|++|++++
T Consensus 154 Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA--FGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999987531 3689999999999997 599999999999999
Q ss_pred eccchhhhhc-CchhHHHH
Q 005467 670 VGNHAELLHK-GRLYAKLV 687 (695)
Q Consensus 670 ~Gth~eLl~~-~g~Y~~l~ 687 (695)
.|+++++... +..|+.+.
T Consensus 232 ~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 232 ECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred ECCHHHHcCCCCHHHHHHH
Confidence 9999999874 44454443
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-45 Score=379.06 Aligned_cols=208 Identities=32% Similarity=0.429 Sum_probs=180.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. .+++.+
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5999999999974 36999999999999999999999999999999999999999999999997653 467889
Q ss_pred ccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ 607 (695)
+||+|++.+|. .|++||+.++. ....++++.++++..++.++....| ..||||||||++||||++++|+
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGL-KGQWRDAALQALAAVGLADRANEWP---------AALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcc-cchHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999987 69999999873 2223456777777777766554433 3799999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhh
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eL 676 (695)
+|||||||++||+.+...+.+.|.++.+ ..++|+|+|||+++.+. .||+|++|++|++++.|+.++.
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQ--QHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDLP 221 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccccC
Confidence 9999999999999999999999988743 13689999999999875 5999999999999999986543
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-45 Score=385.68 Aligned_cols=226 Identities=29% Similarity=0.513 Sum_probs=180.6
Q ss_pred ceEEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc----c-h
Q 005467 448 GHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----L-D 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~----i-~ 520 (695)
+.|+++||+++|+++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+ . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5799999999997532 1259999999999999999999999999999999999999999999999998752 2 3
Q ss_pred hHHHHhhhccccCCc--eeeeeeccccccccCCc-CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 521 IRWLREKIGFVGQEP--QLLQMDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~--~LF~~TI~eNI~~g~~~-~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
...+|+.|+||+|++ .+|..|++|||.++... ....++..+.++ .+-+.. .||.++... .-..||||||||++
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~--~ll~~~-~L~~~~~~~-~~~~LS~Gq~qrv~ 160 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVP--ELLKLV-QLPEDYVKR-SPFELSGGQKRRVA 160 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHc-CCChhHhcC-ChhhCCHHHHHHHH
Confidence 467788999999998 47888999999986311 122233222111 111111 333322110 01379999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eL 676 (695)
||||++.+|++|||||||++||+++.+.+.+.|.++.+. .++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 161 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 161 LAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE--YKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999987531 3689999999999875 5999999999999999999888
Q ss_pred hhc
Q 005467 677 LHK 679 (695)
Q Consensus 677 l~~ 679 (695)
...
T Consensus 239 ~~~ 241 (289)
T PRK13645 239 FSN 241 (289)
T ss_pred hcC
Confidence 653
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-45 Score=384.51 Aligned_cols=219 Identities=28% Similarity=0.494 Sum_probs=180.5
Q ss_pred eEEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc----hhH
Q 005467 449 HVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i----~~~ 522 (695)
.|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997421 13699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHHhhhccccCCc--eeeeeeccccccccCC-cCCCchh----HHHHHHHhhHh-HhHhcCCCCccccccccccCCccch
Q 005467 523 WLREKIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKNED----IEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 523 ~lR~~I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~ee----i~~A~~~a~l~-~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
..|+.|+||+|++ .+|..|+.|||.++.. ...+.++ +.++++..++. ++....| ..|||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~---------~~LSgGq~q 152 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSP---------FELSGGQMR 152 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCc---------ccCCHHHHH
Confidence 6778999999998 5888999999987621 1222222 33334444432 2211111 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth 673 (695)
|++||||++.+|++|||||||++||+++.+.+.+.|.++.+ +|.|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 153 rl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~---~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 153 RVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK---AGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999998742 3689999999999885 5999999999999999999
Q ss_pred hhhhhc
Q 005467 674 AELLHK 679 (695)
Q Consensus 674 ~eLl~~ 679 (695)
+++.+.
T Consensus 230 ~~~~~~ 235 (287)
T PRK13641 230 KEIFSD 235 (287)
T ss_pred HHHhcC
Confidence 998764
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-45 Score=372.06 Aligned_cols=211 Identities=25% Similarity=0.444 Sum_probs=179.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999888887888999
Q ss_pred ccccCCceeeeeeccccccccCC--cC-CCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhh
Q 005467 529 GFVGQEPQLLQMDIKSNIMYGCP--KD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 529 ~~V~Qd~~LF~~TI~eNI~~g~~--~~-~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll 603 (695)
+||+|++.+|+.|++||+.++.. .. ..++++.++++..++.+ +.... ..||||||||++||||++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999999999999999987521 11 11223334444444421 12222 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEee-CCeEEEeccch
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID-DGRIIEVGNHA 674 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~-~G~Ive~Gth~ 674 (695)
++|++|||||||++||+.+.+.+.+.|.++.+. .++|+|+|||+++.++.||+|++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVRE--QNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999999987531 3689999999999998999999994 77888999997
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-45 Score=371.89 Aligned_cols=211 Identities=28% Similarity=0.416 Sum_probs=179.2
Q ss_pred eEEEEEEeeecCCCCc-cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH---H
Q 005467 449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~---l 524 (695)
.|+++||+++|++... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999975321 25999999999999999999999999999999999999999999999999998876543 2
Q ss_pred -HhhhccccCCceeeee-eccccccccCC-cCC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 525 -REKIGFVGQEPQLLQM-DIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 525 -R~~I~~V~Qd~~LF~~-TI~eNI~~g~~-~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
++.++|++|++.+|.. |+.||+.++.. ... .++++.++++..++.++....| ..||||||||++
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Ge~qrl~ 156 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP---------AQLSGGEQQRVA 156 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh---------hhCCHHHHHHHH
Confidence 3579999999999874 99999987421 111 2345666777777766665544 369999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEe
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 670 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~ 670 (695)
|||||+.+|++|||||||++||+++.+.+.+.|.++.+. .++|+|+|||+++.+..||+|++|++|+++|.
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNRE--HGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999887431 36899999999999988999999999999874
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=399.68 Aligned_cols=225 Identities=35% Similarity=0.511 Sum_probs=186.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH----H
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL----R 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l----R 525 (695)
+++++|.-.|+. ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|++||.++.+.+...+ |
T Consensus 29 ~~~~~~~~~~~~---~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~ 105 (400)
T PRK10070 29 LSKEQILEKTGL---SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRR 105 (400)
T ss_pred ccHHHHHhhcCC---eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHh
Confidence 444445444532 248999999999999999999999999999999999999999999999999988876554 3
Q ss_pred hhhccccCCceeee-eeccccccccCC-cCC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
++||||+|++.+|. .|++|||.++.. ... .++++.++++..++.++....| .+||||||||++||
T Consensus 106 ~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~---------~~LSgGq~QRv~LA 176 (400)
T PRK10070 106 KKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP---------DELSGGMRQRVGLA 176 (400)
T ss_pred CCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc---------ccCCHHHHHHHHHH
Confidence 57999999999996 599999998621 011 1345666777888777766655 36999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+.+|++||||||||+||+.+.+.+++.|.++.+ ..++|+|+|||+++.+. .||+|++|++|+|++.|++++++.
T Consensus 177 rAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~--~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 177 RALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA--KHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH--HCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence 999999999999999999999999999999998743 13689999999999875 599999999999999999999987
Q ss_pred cC-c-hhHHHHh
Q 005467 679 KG-R-LYAKLVK 688 (695)
Q Consensus 679 ~~-g-~Y~~l~~ 688 (695)
+. . +.++++.
T Consensus 255 ~~~~~~v~~~~~ 266 (400)
T PRK10070 255 NPANDYVRTFFR 266 (400)
T ss_pred CcccHHHHHHHh
Confidence 52 2 3344544
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=378.26 Aligned_cols=217 Identities=34% Similarity=0.505 Sum_probs=180.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc--C---CCceEEEcCccCCcc--hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTDL--DI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~--p---~~G~I~idG~di~~i--~~ 521 (695)
-|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|.+||+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999974 369999999999999999999999999999999999954 6 499999999998643 34
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCC-cCCC-----chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~~-----~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
..+|+.++||+|++.+|+.|++||+.++.. .... ++++.++++.+++.+.+. +.... ..||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 567889999999999999999999987621 0111 223444555555443322 22222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++++|++|||||||++||.++...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK----DDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYND 230 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh----hCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999873 2489999999999875 599999999999999999
Q ss_pred chhhhhc
Q 005467 673 HAELLHK 679 (695)
Q Consensus 673 h~eLl~~ 679 (695)
++++.+.
T Consensus 231 ~~~~~~~ 237 (252)
T PRK14239 231 TKQMFMN 237 (252)
T ss_pred HHHHHhC
Confidence 9999764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=377.97 Aligned_cols=215 Identities=26% Similarity=0.422 Sum_probs=184.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|+.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999964 36999999999999999999999999999999999999999999999999999888888888999
Q ss_pred cccCCce-eeeeeccccccccCCcC---------CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 530 FVGQEPQ-LLQMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 530 ~V~Qd~~-LF~~TI~eNI~~g~~~~---------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
|++|++. .+..|++||+.++.... ..++++.++++..++.+.....+ ..||||||||++||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la 149 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM---------STLSGGERQRVHVA 149 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc---------ccCCHHHHHHHHHH
Confidence 9999985 45689999998862110 11224455566555544433322 36999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
||++.+|+++||||||++||+++...+.+.|.++.+ +++|+|++||+++.+. .||+|++|++|++++.|+++|+.+
T Consensus 150 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 150 RALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA---TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999999998753 3689999999999995 599999999999999999999875
Q ss_pred c
Q 005467 679 K 679 (695)
Q Consensus 679 ~ 679 (695)
.
T Consensus 227 ~ 227 (256)
T TIGR03873 227 P 227 (256)
T ss_pred H
Confidence 3
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=370.44 Aligned_cols=200 Identities=29% Similarity=0.552 Sum_probs=170.2
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcc
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (695)
+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. .+|+.|+|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 47899999964 36999999999999999999999999999999999999999999999998764 46789999
Q ss_pred ccCCcee---eeeeccccccccCCcC---------CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 531 VGQEPQL---LQMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 531 V~Qd~~L---F~~TI~eNI~~g~~~~---------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
|+|++.+ |+.|++|||.++.... ..++++.++++..++.++....| .+||||||||++|
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~l 143 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI---------GELSGGQQQRVLL 143 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc---------ccCCHHHHHHHHH
Confidence 9999986 5689999998763210 12345666777777766555433 3699999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
|||++++|++|||||||++||+++.+.+.+.|.+..+ +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 144 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR---EGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999998743 36899999999999865 9999999986 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=367.33 Aligned_cols=204 Identities=34% Similarity=0.529 Sum_probs=177.0
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|++. . .|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5799999999642 2 39999999999999999999999999999999999999999999999877654 367899
Q ss_pred cccCCceeeee-eccccccccCCcC-----CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~~~-----~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
|++|++.+|.+ |++||+.++.... .+++++.++++..++.++....|. .||||||||++||||++
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG---------ELSGGERQRVALARVLV 144 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcc---------cCCHHHHHHHHHHHHHh
Confidence 99999999975 9999998763211 124467778888888777766653 69999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
++|++|||||||++||.++.+.+.+.|.++.+. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE--TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999987531 36899999999999865 9999999999998765
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=381.47 Aligned_cols=218 Identities=31% Similarity=0.510 Sum_probs=185.0
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCc--ch
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LD 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~--i~ 520 (695)
+.|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++.. .+
T Consensus 24 ~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 24 TALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred cEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 46999999999964 3699999999999999999999999999999999999984 89999999999864 34
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCC-cCC-----CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCcc
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~-----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQ 592 (695)
...+|+.++||+|++.+|+.|++|||.++.. ... .++++.++++.+++.+.+.. ..+. ..|||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHHH
Confidence 5678899999999999999999999987621 111 12335556666665544332 2222 3799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
|||++||||++++|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|+|++.|
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~----~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g 249 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS----KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYG 249 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999998842 489999999999875 59999999999999999
Q ss_pred cchhhhhc
Q 005467 672 NHAELLHK 679 (695)
Q Consensus 672 th~eLl~~ 679 (695)
+++++.++
T Consensus 250 ~~~~~~~~ 257 (272)
T PRK14236 250 DTDTLFTS 257 (272)
T ss_pred CHHHHhcC
Confidence 99999764
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=376.97 Aligned_cols=217 Identities=31% Similarity=0.513 Sum_probs=182.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh---hcC--CCceEEEcCccCCcc--hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL---YEP--SDGQIYIDGFPLTDL--DI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl---y~p--~~G~I~idG~di~~i--~~ 521 (695)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+ ++| ++|+|.+||+++.+. +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999964 3699999999999999999999999999999999997 454 589999999998754 34
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCC-cCC-----CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~-----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
..+|+.|+||+|++.+|..|++||+.++.. ... .++++.++++..++.+++. +.... ..||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 577889999999999999999999987621 111 1233455555555544332 22222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~ 228 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK----KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDD 228 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999883 3589999999999985 599999999999999999
Q ss_pred chhhhhc
Q 005467 673 HAELLHK 679 (695)
Q Consensus 673 h~eLl~~ 679 (695)
++++.++
T Consensus 229 ~~~~~~~ 235 (250)
T PRK14245 229 TKKIFTN 235 (250)
T ss_pred HHHHhcC
Confidence 9999764
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=355.72 Aligned_cols=178 Identities=36% Similarity=0.660 Sum_probs=164.4
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++|+|+++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.++ ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5799999999753 23699999999999999999999999999999999999999999999999988776 567889999
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEE
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~IL 609 (695)
||+|++.+|+.|++||| -..||||||||++||||++++|++|
T Consensus 79 ~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~l 120 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIV 120 (178)
T ss_pred EEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997 2469999999999999999999999
Q ss_pred EEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEec
Q 005467 610 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~G 671 (695)
||||||++||+++.+.+.+.|++.. +++|+|++||++..++.||++++|++|++++.|
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVL----KDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999998873 358999999999999999999999999998865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-45 Score=379.84 Aligned_cols=218 Identities=30% Similarity=0.450 Sum_probs=184.7
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCc--ch
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~--i~ 520 (695)
..|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++.+ .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 46999999999964 469999999999999999999999999999999999997 589999999999864 34
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCCc-CC-C----chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCcc
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~-~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQ 592 (695)
...+|+.|+||+|++.+|..|++|||.++... .. + ++++.++++..++.+++.. ..+. ..|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCHHH
Confidence 55778899999999999999999999986311 11 1 2334555666666544422 2222 3799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
|||++||||++++|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 244 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK----KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYD 244 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999873 2589999999999885 59999999999999999
Q ss_pred cchhhhhc
Q 005467 672 NHAELLHK 679 (695)
Q Consensus 672 th~eLl~~ 679 (695)
+.+++.+.
T Consensus 245 ~~~~~~~~ 252 (267)
T PRK14237 245 KTRNIFTN 252 (267)
T ss_pred CHHHHhcC
Confidence 99999764
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=376.16 Aligned_cols=216 Identities=31% Similarity=0.452 Sum_probs=185.9
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999974 36999999999999999999999999999999999999999999999999998888778888999
Q ss_pred cccCCcee-eeeeccccccccCCcC-C----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQL-LQMDIKSNIMYGCPKD-V----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~L-F~~TI~eNI~~g~~~~-~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
|++|++.+ +..|++||+.++.... . .++++.++++..++.++....+ ..||||||||++||||++
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGe~qrv~la~al~ 150 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDY---------PQLSGGEQQRVQLARVLA 150 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHh
Confidence 99999987 6789999998863111 1 1234555666666655444332 379999999999999999
Q ss_pred ------cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhh
Q 005467 604 ------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 604 ------~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eL 676 (695)
++|++|||||||++||+++...+.+.|.++.+. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 151 ~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 151 QLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE--RGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred cccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 599999999999999999999999999987521 3689999999999886 5999999999999999999998
Q ss_pred hhc
Q 005467 677 LHK 679 (695)
Q Consensus 677 l~~ 679 (695)
.+.
T Consensus 229 ~~~ 231 (258)
T PRK13548 229 LTP 231 (258)
T ss_pred hCh
Confidence 764
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=373.07 Aligned_cols=218 Identities=26% Similarity=0.475 Sum_probs=181.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH-HHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~-lR~~ 527 (695)
-|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... .|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999964 36999999999999999999999999999999999999999999999999998776543 5788
Q ss_pred hccccCCceeee-eeccccccccCCc--CCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHh
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPK--DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAI 602 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~--~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAl 602 (695)
++||+|++.+|. .|+.||+.++... +.+.++ ....+++.++.+ |++..... ..||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQ-----REDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHH-----HHHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 999999999997 5999999876211 112221 112234445544 34433333 37999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+++|++|||||||++||+++...+.+.+.++.+ +|+|+|++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRD---SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 999999999999999999999999999988743 3689999999997764 5999999999999999999998764
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=387.34 Aligned_cols=215 Identities=27% Similarity=0.460 Sum_probs=182.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5899999999964 36999999999999999999999999999999999999999999999999997754 4578999
Q ss_pred ccccCCceeee-eeccccccccCC-cCCCchhH----HHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~~eei----~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||||++.+|. .|++||+.+... ...+.++. .++++.. .|++..++.++ .||||||||++|||||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~--~LS~G~~qrl~la~aL 153 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFA-------KLENKADAKVG--ELSGGMKRRLTLARAL 153 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-------CCchHhcCchh--hCCHHHHHHHHHHHHH
Confidence 99999999886 699999986421 12232222 2223332 34444555543 7999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+.+|++|||||||++||+.+...+.+.|.++.+ +|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~---~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999998843 36899999999999865 999999999999999999999765
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=376.41 Aligned_cols=221 Identities=23% Similarity=0.400 Sum_probs=181.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH-Hhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l-R~~ 527 (695)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999964 369999999999999999999999999999999999999999999999999988776554 446
Q ss_pred hccccCCceeeee-eccccccccCCcCCC--------------chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCC
Q 005467 528 IGFVGQEPQLLQM-DIKSNIMYGCPKDVK--------------NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSG 590 (695)
Q Consensus 528 I~~V~Qd~~LF~~-TI~eNI~~g~~~~~~--------------~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSG 590 (695)
++||+|++.+|.+ |++|||.++.. ... +++..+ ....+.++++.+ |++..... ..|||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~--gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQH-QQLKTGLFSGLLKTPAFRRAESE--ALDRAATWLERV--GLLEHANRQAGNLAY 156 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhh-ccccchhhhhhccccccccchhH--HHHHHHHHHHhC--ChhhhhhCChhhCCH
Confidence 8999999999985 99999998631 100 000000 111233444443 44443333 37999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEE
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 669 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive 669 (695)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ..++|+|++||+++.+.. ||+|++|++|++++
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~--~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 234 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN--EHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA 234 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHh--hcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe
Confidence 999999999999999999999999999999999999999998753 136899999999999865 99999999999999
Q ss_pred eccchhhhhc
Q 005467 670 VGNHAELLHK 679 (695)
Q Consensus 670 ~Gth~eLl~~ 679 (695)
.|+.+++..+
T Consensus 235 ~~~~~~~~~~ 244 (255)
T PRK11300 235 NGTPEEIRNN 244 (255)
T ss_pred cCCHHHHhhC
Confidence 9999998653
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-45 Score=377.87 Aligned_cols=216 Identities=34% Similarity=0.528 Sum_probs=181.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCcch--hH
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDLD--IR 522 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~i~--~~ 522 (695)
-+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.+.+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 479999999963 369999999999999999999999999999999999986 47999999999886543 34
Q ss_pred HHHhhhccccCCceeeeeeccccccccCC-cCC------CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV------KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~------~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
.+|+.++||+|++.+|.+|+.|||.++.. .+. .++++.++++..++.+++. +.++. ..||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 57889999999999999999999987621 111 1233445556655544321 12222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++++|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~ 231 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK----KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999873 35899999999999864 99999999999999999
Q ss_pred chhhhhc
Q 005467 673 HAELLHK 679 (695)
Q Consensus 673 h~eLl~~ 679 (695)
++++.+.
T Consensus 232 ~~~~~~~ 238 (251)
T PRK14244 232 TQEIFKN 238 (251)
T ss_pred HHHHhcC
Confidence 9999865
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-45 Score=369.46 Aligned_cols=205 Identities=28% Similarity=0.471 Sum_probs=173.9
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH---HHHh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLRE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~---~lR~ 526 (695)
|+++||+++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 7899999999532 3699999999999999999999999999999999999999999999999999876544 3688
Q ss_pred hhccccCCceee-eeeccccccccCC-cCCCch----hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 527 KIGFVGQEPQLL-QMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 527 ~I~~V~Qd~~LF-~~TI~eNI~~g~~-~~~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
.++||+|++.+| ..|++||+.++.. ...+++ ++.++++..++.++....| ..||||||||++|||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~lar 150 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP---------IQLSGGEQQRVGIAR 150 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCc---------hhCCHHHHHHHHHHH
Confidence 999999999874 6799999988621 122222 3445566666655544333 379999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 668 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv 668 (695)
|++++|++|||||||++||+++.+.+.+.|.++.+ +++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR---VGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999999998743 36899999999999876 9999999999985
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-45 Score=377.73 Aligned_cols=220 Identities=30% Similarity=0.479 Sum_probs=182.6
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCcc--h
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--D 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~i--~ 520 (695)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+. +
T Consensus 11 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 35999999999964 3699999999999999999999999999999999999985 799999999988653 3
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCC-cCCCch----hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
...+|+.++||+|++.+|..|++||+.++.. ...+.+ ++.++++.+++.+.+. ..+++.+ ..||||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~~--~~LSgG~~qr 162 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLKSPA--LSLSGGQQQR 162 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhcCCh--hhCCHHHHHH
Confidence 4567889999999999999999999987621 112222 3444555555432211 1122211 3799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++.+|++|+|||||++||+++...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~----~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 238 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK----KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTR 238 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh----hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999873 25899999999999854 9999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++.+.
T Consensus 239 ~~~~~ 243 (258)
T PRK14268 239 QIFHN 243 (258)
T ss_pred HHhcC
Confidence 99754
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-45 Score=381.09 Aligned_cols=216 Identities=29% Similarity=0.493 Sum_probs=182.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc--chhHHHHhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK 527 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~--i~~~~lR~~ 527 (695)
|+++||+++|++. .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 6899999999742 369999999999999999999999999999999999999999999999999852 234567899
Q ss_pred hccccCCc--eeeeeeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 528 IGFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 528 I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
|+|++|++ .+|..|+.|||.++.. ...+. +++.++++..++.++....| ..|||||+||++|||
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LS~Gq~qrv~lar 150 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPP---------HHLSGGQKKRVAIAG 150 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCCh---------hhCCHHHHHHHHHHH
Confidence 99999997 4788999999988621 11222 33445556555544333222 379999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|++.+|++|||||||++||+.+...+.+.|.++.+ +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~---~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK---EGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998743 3689999999999986 5999999999999999999998764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=378.41 Aligned_cols=231 Identities=26% Similarity=0.455 Sum_probs=189.6
Q ss_pred eEEEEEEeeecCCC------CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH
Q 005467 449 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~------~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~ 522 (695)
-|+++||+++|+++ .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999632 124699999999999999999999999999999999999999999999999998765556
Q ss_pred HHHhhhccccCCce--eee-eeccccccccCCc--CC----CchhHHHHHHHhhHh-HhHhcCCCCccccccccccCCcc
Q 005467 523 WLREKIGFVGQEPQ--LLQ-MDIKSNIMYGCPK--DV----KNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQ 592 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~--LF~-~TI~eNI~~g~~~--~~----~~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~~LSGGQ 592 (695)
..++.++||+|++. ++. .|+.+|+.+.... .. .++++.++++..++. +.....| ..|||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~LS~G~ 154 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYP---------HMLAPGQ 154 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCc---------hhcCHHH
Confidence 66778999999985 443 4788888653110 11 124556667777763 3322222 3699999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
|||++||||++++|++|||||||++||+++.+.+.+.|.++.+. .|+|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK--QGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999987531 36899999999999976 9999999999999999
Q ss_pred cchhhhhc--CchhHHHHhhh
Q 005467 672 NHAELLHK--GRLYAKLVKRQ 690 (695)
Q Consensus 672 th~eLl~~--~g~Y~~l~~~q 690 (695)
+++++.+. ...+++++...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhc
Confidence 99999875 35667777654
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=369.84 Aligned_cols=215 Identities=32% Similarity=0.490 Sum_probs=186.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++. + .|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++
T Consensus 2 l~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL---P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECCc---c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 6899999999632 2 39999999999999999999999999999999999999999999999877654 256899
Q ss_pred cccCCceeeee-eccccccccCCcC-----CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~~~-----~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+|.+ |+.|||.++..+. ..++++.++++..++.+++...|. .||||||||++||||++
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~G~~qrv~laral~ 145 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG---------QLSGGQRQRVALARCLV 145 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcc---------cCCHHHHHHHHHHHHHh
Confidence 99999999985 9999998752111 124567788888888888777663 69999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcCch
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRL 682 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~g~ 682 (695)
++|++|||||||++||.++.+.+.+.|.++.+. .++|+|++||++..+.. ||+|++|++|++++.|+++++......
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~~~ 223 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQE--RQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGKAS 223 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhChhH
Confidence 999999999999999999999999999987431 36899999999999865 999999999999999999999875533
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-45 Score=373.87 Aligned_cols=214 Identities=30% Similarity=0.476 Sum_probs=186.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++|+|++ +++++|+||+|+|||+++|+||||||||||+++|+|+++|++|+|++||+++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 579999999974 369999999999999999999999999999999999999999999999999887654 267899
Q ss_pred cccCCceeeee-eccccccccCC-----cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCP-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~-----~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+|.+ |+.||+.++.. +...++++.++++..++++++...| ..||||||||++||||++
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrl~laral~ 146 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP---------SQLSGGQQQRVAIARALV 146 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHHHh
Confidence 99999999975 99999987621 1112345667777778877776665 369999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
++|++|||||||++||..+.+.+.+.|.++.+ ..++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQK--ELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999999999999998753 126899999999999864 999999999999999999998764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-45 Score=386.41 Aligned_cols=215 Identities=30% Similarity=0.494 Sum_probs=180.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ..+|+.|
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA-RLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH-HHHhhcE
Confidence 4899999999964 36999999999999999999999999999999999999999999999999986643 5678899
Q ss_pred ccccCCceeee-eeccccccccCC-cCCCchhHH----HHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDIE----WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~~eei~----~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.+|. .|++||+.+... ...++++.. ++++..+ +++.+++.+ ..||||||||++||||+
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-------l~~~~~~~~--~~LSgG~~qrv~la~al 150 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-------LESKADVRV--ALLSGGMKRRLTLARAL 150 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-------ChhHhcCch--hhCCHHHHHHHHHHHHH
Confidence 99999999885 699999975311 122333332 2233333 333344443 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+.+|++|||||||++||+.+...+.+.|.++.+ +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 151 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 151 INDPQLLILDEPTTGLDPHARHLIWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998743 36899999999999864 999999999999999999999764
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-45 Score=373.45 Aligned_cols=214 Identities=32% Similarity=0.514 Sum_probs=180.8
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++|+|++ +++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 579999999974 369999999999999999999999999999999999999999999999999876553 467899
Q ss_pred cccCCceeeee-eccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+|.+ |++||+.++... ..+ ++++.++++..++.++.++.| .+|||||+||++||||++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP---------NQLSGGQRQRVALARALA 146 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 99999999975 999999886311 111 223444445444444433322 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
++|+++||||||++||.++++.+.+.|.+..+ ..++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~--~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHD--EVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999998743 126899999999998755 999999999999999999999753
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=387.72 Aligned_cols=230 Identities=30% Similarity=0.475 Sum_probs=186.5
Q ss_pred eEEEEEEeeecCCCC-------ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh
Q 005467 449 HVQFVNISFHYPSRP-------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~-------~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~ 521 (695)
-|+++|++++|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.++.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999997321 1469999999999999999999999999999999999999999999999999988764
Q ss_pred H---HHHhhhccccCCce--eee-eeccccccccC--CcCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccC
Q 005467 522 R---WLREKIGFVGQEPQ--LLQ-MDIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLS 589 (695)
Q Consensus 522 ~---~lR~~I~~V~Qd~~--LF~-~TI~eNI~~g~--~~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LS 589 (695)
. .+|++|+||+|++. |+. .||.+|+.... ....+ .+++.++++.+++++ .+++... ..||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~p--~~LS 156 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDRYP--HMFS 156 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcCCC--ccCC
Confidence 3 56788999999984 554 48888886321 01112 234555666666532 1223222 3699
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 668 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv 668 (695)
||||||++|||||+.+|++||+||||++||..+.+.|.+.|.++.+. .|.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 157 gGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~--~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 157 GGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE--LGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999987542 36899999999999975 9999999999999
Q ss_pred Eeccchhhhhc-CchhH-HHHh
Q 005467 669 EVGNHAELLHK-GRLYA-KLVK 688 (695)
Q Consensus 669 e~Gth~eLl~~-~g~Y~-~l~~ 688 (695)
|.|+.++++++ ...|. .|+.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ll~ 256 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQALLS 256 (327)
T ss_pred EECCHHHHhcCCCCHHHHHHHH
Confidence 99999999875 23454 3443
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=396.24 Aligned_cols=216 Identities=27% Similarity=0.470 Sum_probs=186.8
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+++. .|+.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999964 369999999999999999999999999999999999999999999999999987654 5789
Q ss_pred hccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
||||+|++.||. .|+.|||+|+.. ...+ ++++.++++..++.++.+..|. .||||||||+|||||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~---------~LSgGq~QRVaLARA 163 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH---------QLSGGQRQRVALARS 163 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh---------hCCHHHHHHHHHHHH
Confidence 999999999996 599999998832 1122 2345566666666655555443 699999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhc
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|+++|++|+||||||+||..+...+.+.|.++.+. .|.|+|+|||+++.+ .-||+|++|++|+|++.|+++|+..+
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER--VGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999888877542 368999999999986 55999999999999999999999875
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=375.28 Aligned_cols=217 Identities=26% Similarity=0.469 Sum_probs=182.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC-----CceEEEcCccCCcc--hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTDL--DI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-----~G~I~idG~di~~i--~~ 521 (695)
.|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++.+. +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999974 36999999999999999999999999999999999999997 69999999988643 45
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-CCC-c----hhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVK-N----EDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~~-~----eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
..+|+.++||+|++.+|+.|++|||.++... ... . +++.++++..++.+++. ..... ..||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 6788999999999999999999999986310 111 1 22333444455443332 22222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++.+|++|||||||++||+++...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK----QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGR 229 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCC
Confidence 99999999999999999999999999999999999998873 35899999999999876 89999999999999999
Q ss_pred chhhhhc
Q 005467 673 HAELLHK 679 (695)
Q Consensus 673 h~eLl~~ 679 (695)
.+++...
T Consensus 230 ~~~~~~~ 236 (251)
T PRK14249 230 TGEIFSR 236 (251)
T ss_pred HHHHHhC
Confidence 9998654
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=374.98 Aligned_cols=225 Identities=30% Similarity=0.481 Sum_probs=185.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCcc--hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~i--~~ 521 (695)
-|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999964 3699999999999999999999999999999999999984 899999999988653 34
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-CC-----CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~-----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
..+|+.++|++|++.+|..|++||+.++... .. .++++.++++..++++.+.. .... ..||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHH
Confidence 5678899999999999999999999876311 11 12334555666665443321 1222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++++|++|||||||++||..+...+.+.|.+.. +++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS----ENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGP 228 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh----cCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999874 2589999999999765 599999999999999999
Q ss_pred chhhhhcC-chhHHHH
Q 005467 673 HAELLHKG-RLYAKLV 687 (695)
Q Consensus 673 h~eLl~~~-g~Y~~l~ 687 (695)
++++.++. ..|.+.+
T Consensus 229 ~~~~~~~~~~~~~~~~ 244 (250)
T PRK14262 229 TREIVERPKNKLTEEY 244 (250)
T ss_pred HHHHHhCCCChHHHHH
Confidence 99998653 2344433
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=377.57 Aligned_cols=218 Identities=23% Similarity=0.391 Sum_probs=188.6
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999974 369999999999999999999999999999999999999999999999999988888888889
Q ss_pred hccccCCceeee-eeccccccccCCcC---------CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~~---------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
|+||+|++.+|. .|++||+.++..+. ..++++.++++..++.++....| ..||||||||++
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~Gq~qrv~ 153 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV---------DTLSGGQRQRAW 153 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc---------ccCChHHHHHHH
Confidence 999999998875 69999998752111 11235566777777766544433 379999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eL 676 (695)
||||++++|++|||||||++||+++.+.+.+.|.++.+. .++|+|++||++..+. .||+|++|++|++++.|+.+++
T Consensus 154 laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~--~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE--KGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999987531 3689999999999875 5999999999999999999998
Q ss_pred hhc
Q 005467 677 LHK 679 (695)
Q Consensus 677 l~~ 679 (695)
...
T Consensus 232 ~~~ 234 (265)
T PRK10253 232 VTA 234 (265)
T ss_pred hhH
Confidence 753
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=375.39 Aligned_cols=221 Identities=29% Similarity=0.469 Sum_probs=183.7
Q ss_pred cceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc--C---CCceEEEcCccCCcc--
Q 005467 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTDL-- 519 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~--p---~~G~I~idG~di~~i-- 519 (695)
++.|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|++||.++.+.
T Consensus 2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 357999999999974 369999999999999999999999999999999999986 4 689999999998643
Q ss_pred hhHHHHhhhccccCCceeee-eeccccccccCCc-C-CC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCcc
Q 005467 520 DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-D-VK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 592 (695)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~-~-~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQ 592 (695)
+...+|+.|+||+|++.+|. .|++|||.++... . .+ ++++.++++..++.+++..+. ++ .-..|||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~--~~~~LS~G~ 153 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL---KS--NAMELSGGQ 153 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHh---hC--CcCcCCHHH
Confidence 44567889999999999998 6999999875211 1 11 233455566666654433211 11 113799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
|||++||||++.+|++|||||||++||.++.+.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|+|++.|
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~----~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE----KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh----CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999998843 479999999999985 59999999999999999
Q ss_pred cchhhhhc
Q 005467 672 NHAELLHK 679 (695)
Q Consensus 672 th~eLl~~ 679 (695)
+++|+...
T Consensus 230 ~~~~~~~~ 237 (252)
T PRK14256 230 ETKKIFTT 237 (252)
T ss_pred CHHHHHhC
Confidence 99999754
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=400.90 Aligned_cols=451 Identities=18% Similarity=0.214 Sum_probs=320.1
Q ss_pred ccccceechhhhHHHHHHHHHHHHhhhcccccccccccccccc------ccccchhhhhhhhhccchhHHHHHhhccchh
Q 005467 189 GLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLT------SRLTADCQRLSNVIGNDINMILRNSLQGAGA 262 (695)
Q Consensus 189 ~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~------srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~ 262 (695)
..+.|+......+...-+...+.++.+... .||.-...|.+- +|+..|+..+-+........++.++++++..
T Consensus 104 v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF 182 (604)
T COG4178 104 VAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISF 182 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 334444333333333333444455555555 444444444332 6999998888776555556666666666666
Q ss_pred hhHHHHhhccch---------------hhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeec
Q 005467 263 FINLLTLSWPLT---------------LSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYG 327 (695)
Q Consensus 263 ~i~l~~~sw~l~---------------li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~ 327 (695)
.+++.-++..++ .++++-+++-.++..++++..-+..-+.++..+.....+.-.-++.+.|-.|+
T Consensus 183 ~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~ 262 (604)
T COG4178 183 TGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYR 262 (604)
T ss_pred HHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 655553433332 12222233333444567777777776667667777777788888999999999
Q ss_pred chhhhhhhHHHHHHHhhcchhhhc---cccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeee
Q 005467 328 TEEKELGRYKIWLEKLAFIRIRES---MAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYAT 404 (695)
Q Consensus 328 ~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~ 404 (695)
.|+.|.++.++......+.-.+.. ..+.+++..... ++.++-+.+++-....|+++.|.++.....+.++...+
T Consensus 263 GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~---~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~ssl 339 (604)
T COG4178 263 GEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGW---LSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSL 339 (604)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhH---HHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHH
Confidence 999988777766655444222211 122222222222 22244455666667889999999998888888888777
Q ss_pred eecccchhHHHHhhcchhhHHHhhcc------CCcccccccc-cc-cccccceEEEEEEeeecCCCCccceeeeeeeEee
Q 005467 405 WRMVDNLSSLLQSIGATEKVFQLIDL------LPSNQFLSEG-VK-LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIE 476 (695)
Q Consensus 405 ~~l~~~~~~~~~~~~a~~rl~~~l~~------~~~~~~~~~~-~~-~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~ 476 (695)
..+.+++..+..-.+...|+.++.+. +++....+.. .. ....+..|+|+|++..-|+. ...|+++||+|+
T Consensus 340 swfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~~~v~ 417 (604)
T COG4178 340 SWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVR 417 (604)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--CeeeccceeeeC
Confidence 77777788887777888999888632 1111111000 00 01114579999999998864 479999999999
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCc-CCC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVK 555 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~~ 555 (695)
|||.+-|.||||||||||++.|+|++|.-+|+|-.-. -..+-|+||.|++=.||.||=|+|-..+ +.+
T Consensus 418 ~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~ 486 (604)
T COG4178 418 PGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFS 486 (604)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCC
Confidence 9999999999999999999999999999999986641 1247899999999999999999998433 389
Q ss_pred chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhc
Q 005467 556 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 635 (695)
Q Consensus 556 ~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~ 635 (695)
|+|+.+++.+|++.++++++.+- +.+ +.-||||||||||+||.++.+|++++|||||||||+++|..+.+.+++.
T Consensus 487 d~~l~~vL~~vgL~~L~~rl~~~-~~W--~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~-- 561 (604)
T COG4178 487 DAELVAVLHKVGLGDLAERLDEE-DRW--DRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEE-- 561 (604)
T ss_pred hHHHHHHHHHcCcHHHHHHHhcc-CcH--hhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhh--
Confidence 99999999999999999986421 111 2379999999999999999999999999999999999999999999876
Q ss_pred cccCcceEEEEeeecccccccCeEEEee
Q 005467 636 DCKTKRTVIVIAHRLSTIKAVDRIVVID 663 (695)
Q Consensus 636 ~~~~~~TvIiIaHrlsti~~aD~IvvL~ 663 (695)
..+.|+|-|+||.......++.+-++
T Consensus 562 --lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 562 --LPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred --CCCCEEEEeccchhhHHHHhhheeec
Confidence 45689999999999988877766554
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=376.76 Aligned_cols=217 Identities=29% Similarity=0.476 Sum_probs=180.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~--i~~ 521 (695)
-|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 4899999999964 369999999999999999999999999999999999875 789999999999864 344
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-CC-----CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~-----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
..+|+.++||+|++.+|++|+.||+.++... .. .++++.++++..++.+.+. ..... .+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 5678899999999999999999999876210 11 1223444555554432221 11121 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 246 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE----EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQ 246 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc----CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999998732 479999999999875 599999999999999999
Q ss_pred chhhhhc
Q 005467 673 HAELLHK 679 (695)
Q Consensus 673 h~eLl~~ 679 (695)
++++..+
T Consensus 247 ~~~~~~~ 253 (268)
T PRK14248 247 TEQIFTS 253 (268)
T ss_pred HHHHHhC
Confidence 9998764
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=386.88 Aligned_cols=228 Identities=24% Similarity=0.375 Sum_probs=182.2
Q ss_pred eEEEEEEeeecCCCCc-cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc----CCCceEEEcCccCCcchhHH
Q 005467 449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~----p~~G~I~idG~di~~i~~~~ 523 (695)
-++++||+++|+++.. ..+|+||||+|++||++|||||||||||||+++|+|+++ |++|+|++||+|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999975321 359999999999999999999999999999999999998 48999999999999888776
Q ss_pred HHh----hhccccCCce--eee-eeccccc----ccc--CCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCC
Q 005467 524 LRE----KIGFVGQEPQ--LLQ-MDIKSNI----MYG--CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG 590 (695)
Q Consensus 524 lR~----~I~~V~Qd~~--LF~-~TI~eNI----~~g--~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSG 590 (695)
+++ .|+||+|++. ++. .|+.+|+ ... ......++++.++++.+++.+....+ +.. -..|||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l----~~~--p~~LSg 156 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRL----DVY--PHQLSG 156 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHH----hCC--chhCCH
Confidence 654 6999999985 332 3555544 322 00111234566677777765321111 100 137999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEE
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIE 669 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive 669 (695)
|||||++|||||+.+|++||+|||||+||..+...|.+.|.++.+. .|.|+|+|||+++.+. .||+|+||++|+|+|
T Consensus 157 Gq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~--~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 157 GMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK--ENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999988542 4689999999999985 599999999999999
Q ss_pred eccchhhhhc-CchhH
Q 005467 670 VGNHAELLHK-GRLYA 684 (695)
Q Consensus 670 ~Gth~eLl~~-~g~Y~ 684 (695)
.|+.+++.++ ...|.
T Consensus 235 ~g~~~~~~~~p~hpyt 250 (326)
T PRK11022 235 TGKAHDIFRAPRHPYT 250 (326)
T ss_pred ECCHHHHhhCCCChHH
Confidence 9999999875 33454
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=376.49 Aligned_cols=217 Identities=29% Similarity=0.479 Sum_probs=180.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~--i~~ 521 (695)
-|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5899999999974 369999999999999999999999999999999999997 699999999998853 345
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCC-cCCCch-----hHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKNE-----DIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~~~e-----ei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
..+|+.++|++|++.+|..|++|||.++.. .+.+++ ++.++++..++.+ ++...... ..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHH
Confidence 677889999999999999999999997621 122222 1222333332221 22222222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++++|++|||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 249 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK----KDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDD 249 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH----cCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999874 2589999999999986 499999999999999999
Q ss_pred chhhhhc
Q 005467 673 HAELLHK 679 (695)
Q Consensus 673 h~eLl~~ 679 (695)
++++...
T Consensus 250 ~~~~~~~ 256 (271)
T PRK14238 250 TDKIFSN 256 (271)
T ss_pred HHHHHcC
Confidence 9999764
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-45 Score=366.81 Aligned_cols=203 Identities=37% Similarity=0.542 Sum_probs=170.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc--chhHHHHhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREK 527 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~--i~~~~lR~~ 527 (695)
|+++||+++|++ .++|+|+||+++|||++||+||||||||||+++|+|+++|++|+|.+||+++.. .+...+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 578999999974 369999999999999999999999999999999999999999999999998843 455677889
Q ss_pred hccccCCceeee-eeccccccccCC--cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~--~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
|+||+|++.+|. .|++||+.++.. .+.+. +++.++++..++.+.+...| ..||||||||++|||
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~ 148 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP---------AQLSGGQQQRVAIAR 148 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc---------cccCHHHHHHHHHHH
Confidence 999999999986 699999987621 12222 22333444444443333322 379999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeE
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 667 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~I 667 (695)
|++++|++|||||||++||+++.+.+.+.|.++.+ .++|+|++||+++.+.. ||+|++|++|++
T Consensus 149 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 149 ALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE---EGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999998753 36899999999999865 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=365.36 Aligned_cols=203 Identities=27% Similarity=0.525 Sum_probs=169.4
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999964 369999999999999999999999999999999999999999999999988753 4678999
Q ss_pred cccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
|++|++.+|. .|++||+.++.. ...+ ++++.++++..++.+.....| .+||||||||++||||++
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV---------EELSKGNQQKVQFIAAVI 144 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcH---------hhCCHHHHHHHHHHHHHh
Confidence 9999999987 499999987521 0111 223333444444433322211 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
.+|++|||||||++||+.+.+.+.+.|++..+ +++|+|+|||++..+.. ||+|++|++|++++.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~---~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDVIRELAR---AGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999988743 36899999999998864 9999999999998765
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=367.92 Aligned_cols=213 Identities=35% Similarity=0.536 Sum_probs=171.2
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh---HHHH
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI---RWLR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~---~~lR 525 (695)
|+++||+|+|+++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999997431 1269999999999999999999999999999999999999999999999999987763 5778
Q ss_pred hhhccccCCc--eee-eeeccccccccCC---cCCCchhHHHHHHHhhHhHhHhcCCCCcc-ccccc--cccCCccchhH
Q 005467 526 EKIGFVGQEP--QLL-QMDIKSNIMYGCP---KDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDD--DLLSGGQKQRI 596 (695)
Q Consensus 526 ~~I~~V~Qd~--~LF-~~TI~eNI~~g~~---~~~~~eei~~A~~~a~l~~fI~~LP~G~d-T~vge--~~LSGGQkQRI 596 (695)
+.++|++|++ .++ ..|++|||.++.. ....+++...++ ++.++.+ |++ ..... ..||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 8999999998 344 5799999986521 111111111111 1223332 222 12222 37999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
+||||++.+|++|||||||++||+++.+.+.+.|.+..+. .|+|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEE--LGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999987531 2689999999999987 59999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=376.43 Aligned_cols=218 Identities=28% Similarity=0.471 Sum_probs=182.7
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCc--ch
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LD 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~--i~ 520 (695)
..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999964 369999999999999999999999999999999999998 689999999998853 45
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCCc-CC---CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccch
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQ 594 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~---~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQ 594 (695)
...+|+.++||+|++.+|..|++||+.++... .. .++++.++++.+++.+.+ ++.... ..|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 66788899999999999999999999987311 11 123445555655543322 222222 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeC---------
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDD--------- 664 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~--------- 664 (695)
|++||||++++|++|||||||++||+++...+.+.|.++. +++|+|+|||+++.+. .||+|++|++
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~----~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g 237 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK----KNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGG 237 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhcCEEEEEecccccccccc
Confidence 9999999999999999999999999999999999999873 2489999999999885 5999999996
Q ss_pred --CeEEEeccchhhhhc
Q 005467 665 --GRIIEVGNHAELLHK 679 (695)
Q Consensus 665 --G~Ive~Gth~eLl~~ 679 (695)
|+++|.|+.+++...
T Consensus 238 ~~g~~~~~~~~~~~~~~ 254 (269)
T PRK14259 238 KVGYLVEFNETKKIFNS 254 (269)
T ss_pred ccceEEEeCCHHHHHhC
Confidence 679999999999764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=371.60 Aligned_cols=214 Identities=25% Similarity=0.316 Sum_probs=174.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh--hcCCCceEEEcCccCCcchhHHH-Hh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-RE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl--y~p~~G~I~idG~di~~i~~~~l-R~ 526 (695)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.+||.++..++.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 579999999974 3699999999999999999999999999999999999 57999999999999988776654 44
Q ss_pred hhccccCCceeeee-eccccccccCCc--C------CC----chhHHHHHHHhhHhHhHhcCCCC-ccccccccccCCcc
Q 005467 527 KIGFVGQEPQLLQM-DIKSNIMYGCPK--D------VK----NEDIEWAAKQAYVHEFILSLPCG-YETLVDDDLLSGGQ 592 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~-TI~eNI~~g~~~--~------~~----~eei~~A~~~a~l~~fI~~LP~G-~dT~vge~~LSGGQ 592 (695)
.++||+|++.+|.+ |++||+.+.... . .+ ++++.++++..++ +++ .+..++ ..|||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~-~~LS~G~ 149 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM-------DEEFLNRSVN-EGFSGGE 149 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCC-------chhhcccccc-cCcCHHH
Confidence 59999999999875 899999764210 0 11 1223333333333 211 122221 1499999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc--cCeEEEeeCCeEEEe
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEV 670 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~--aD~IvvL~~G~Ive~ 670 (695)
|||++||||++++|++|||||||++||+.+.+.+.+.|.++.+ +++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 150 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 150 KKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE---PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH---CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999998743 36899999999999875 799999999999999
Q ss_pred ccchhhh
Q 005467 671 GNHAELL 677 (695)
Q Consensus 671 Gth~eLl 677 (695)
|++++..
T Consensus 227 g~~~~~~ 233 (243)
T TIGR01978 227 GDVELAK 233 (243)
T ss_pred cCHHHhc
Confidence 9998654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=372.53 Aligned_cols=219 Identities=31% Similarity=0.507 Sum_probs=182.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCcc--hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~i--~~ 521 (695)
.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+. +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999964 3699999999999999999999999999999999999986 799999999998653 34
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-CC-C----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~-~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
..+|+.++|++|++.+|+.|++||+.++... .. + ++++.++++.+++.+.+..+. +. .-..||||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---~~--~~~~LS~G~~qr 155 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDL---KK--SALKLSGGQQQR 155 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHh---hC--CcccCCHHHHHH
Confidence 5678899999999999999999999976211 11 1 133455666666543322211 11 113799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++++|++||||||||+||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 156 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~----~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (251)
T PRK14270 156 LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK----EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTE 231 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh----CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHH
Confidence 9999999999999999999999999999999999998743 4899999999998765 9999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++...
T Consensus 232 ~~~~~ 236 (251)
T PRK14270 232 KIFLE 236 (251)
T ss_pred HHhcC
Confidence 98754
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=373.27 Aligned_cols=226 Identities=27% Similarity=0.406 Sum_probs=186.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC---CceEEEcCccCCcc-----h
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDL-----D 520 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~---~G~I~idG~di~~i-----~ 520 (695)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999964 36999999999999999999999999999999999999986 49999999988653 3
Q ss_pred hHHHHhhhccccCCceeee-eeccccccccCCcC-------------CCchhHHHHHHHhhHhHhHhcCCCCcccccccc
Q 005467 521 IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKD-------------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 586 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~-------------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~ 586 (695)
...+|+.++|++|++.+|. .|+.||+.++.... ..++++.++++..++.++++..| .
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~ 151 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV---------S 151 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc---------c
Confidence 4567889999999999887 59999998763100 01234555666666554443322 3
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCC
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDG 665 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G 665 (695)
.||||||||++||||++.+|++|||||||++||.++.+.+.+.|.++.+. .|+|+|+|||+++.+ +.||+|++|++|
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN--DGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999987531 368999999999986 569999999999
Q ss_pred eEEEeccchhhhhcCchhHHHHhhh
Q 005467 666 RIIEVGNHAELLHKGRLYAKLVKRQ 690 (695)
Q Consensus 666 ~Ive~Gth~eLl~~~g~Y~~l~~~q 690 (695)
++++.|+++++ ......++|...
T Consensus 230 ~i~~~g~~~~~--~~~~~~~~~~~~ 252 (262)
T PRK09984 230 HVFYDGSSQQF--DNERFDHLYRSI 252 (262)
T ss_pred EEEEeCCHHHh--ccHHHHHHHhhh
Confidence 99999999997 234556666544
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=372.48 Aligned_cols=217 Identities=30% Similarity=0.504 Sum_probs=182.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCC-cchhH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLT-DLDIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~-~i~~~ 522 (695)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 5899999999974 3699999999999999999999999999999999999996 5999999999885 44566
Q ss_pred HHHhhhccccCCceeeeeeccccccccCCc-CCC-----chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccch
Q 005467 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQ 594 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~~-----~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQ 594 (695)
.+|+.++||+|++.+|..|++|||.++... ... ++++.++++.+++.+.+. +.... ..|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 788999999999999999999999986211 111 123344555555543332 22222 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth 673 (695)
|++||||++.+|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~----~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~ 228 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK----NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDT 228 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999998843 4899999999999875 999999999999999999
Q ss_pred hhhhhc
Q 005467 674 AELLHK 679 (695)
Q Consensus 674 ~eLl~~ 679 (695)
+++..+
T Consensus 229 ~~~~~~ 234 (249)
T PRK14253 229 QVIFSN 234 (249)
T ss_pred HHHHcC
Confidence 998653
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=351.44 Aligned_cols=173 Identities=43% Similarity=0.731 Sum_probs=162.4
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|++. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5799999999753 246999999999999999999999999999999999999999999999999999888888999999
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEE
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~IL 609 (695)
||+|++.+|+.|++||+ ||||||||++||||++++|++|
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997 9999999999999999999999
Q ss_pred EEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeE
Q 005467 610 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 667 (695)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~I 667 (695)
||||||++||+.+.+.+.+.|.++.+ +++|+|++||+++.++.||+|++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKA---AGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999988743 36899999999999989999999999975
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=372.84 Aligned_cols=225 Identities=28% Similarity=0.423 Sum_probs=184.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCcc--hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~i--~~ 521 (695)
.|+++||+|+|++ .++|+|+||+|+|||+++|+||||||||||+++|+|+.+| ++|+|.+||+++.+. +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999964 3699999999999999999999999999999999999763 489999999998776 45
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-CC-C----chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~-~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
...|+.|+||+|++.+|+.|++|||.++... +. . ++++.++++.+++.+. +.+..+. ..||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE-------VKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh-------hHHHhhcChhhCCHHHH
Confidence 6778899999999999999999999987311 11 1 1233444444444322 2222333 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++.+|+++||||||++||.++.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~----~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK----EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh----CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCC
Confidence 999999999999999999999999999999999999998743 489999999999986 599999999999999999
Q ss_pred chhhhhcC-chhHHHH
Q 005467 673 HAELLHKG-RLYAKLV 687 (695)
Q Consensus 673 h~eLl~~~-g~Y~~l~ 687 (695)
.+++..+. ..+.+.|
T Consensus 232 ~~~~~~~~~~~~~~~~ 247 (253)
T PRK14261 232 TTQIFENPHEELTENY 247 (253)
T ss_pred HHHHHhCCCcHHHHHH
Confidence 99987643 2344443
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=374.63 Aligned_cols=219 Identities=30% Similarity=0.461 Sum_probs=183.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCC--cchh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLT--DLDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~--~i~~ 521 (695)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++. +.+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999964 369999999999999999999999999999999999986 47999999999885 3455
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-CC---CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV---KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~---~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
..+|+.|+||+|++.+|+.|+.|||.++... .. .++++.++++.+++.+++..+. +.. ...||||||||++
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~---~~~--~~~LSgGq~qrv~ 161 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKL---KQS--GLSLSGGQQQRLC 161 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHh---cCC--cccCCHHHHHHHH
Confidence 6778899999999999989999999986311 11 1234555667777655543211 111 1379999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEee---------CCeE
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID---------DGRI 667 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~---------~G~I 667 (695)
||||++++|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|+ +|+|
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 162 IARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE----QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceE
Confidence 99999999999999999999999999999999998843 479999999999875 599999998 8999
Q ss_pred EEeccchhhhhc
Q 005467 668 IEVGNHAELLHK 679 (695)
Q Consensus 668 ve~Gth~eLl~~ 679 (695)
++.|+++|+.+.
T Consensus 238 ~~~~~~~~~~~~ 249 (264)
T PRK14243 238 VEFDRTEKIFNS 249 (264)
T ss_pred EEeCCHHHHHhC
Confidence 999999999764
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=391.23 Aligned_cols=219 Identities=28% Similarity=0.421 Sum_probs=182.2
Q ss_pred EEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCc----cCCcchhHHHH---
Q 005467 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF----PLTDLDIRWLR--- 525 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~----di~~i~~~~lR--- 525 (695)
+++..+|+. ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|++||. ++...+...+|
T Consensus 28 ~~~~~~~g~---~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r 104 (382)
T TIGR03415 28 EEILDETGL---VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLR 104 (382)
T ss_pred HHHHHhhCC---EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHh
Confidence 344455643 46899999999999999999999999999999999999999999999996 66666655543
Q ss_pred -hhhccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 526 -EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 526 -~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
++|+||+|++.+|+ .|++||+.|+.. ...+ +++..++++..++.++.+..| ..||||||||++|
T Consensus 105 ~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~---------~~LSgGq~QRV~L 175 (382)
T TIGR03415 105 THRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP---------GELSGGMQQRVGL 175 (382)
T ss_pred cCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHH
Confidence 57999999999997 799999998731 0122 234566777777766654444 3699999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||+.+|+|||||||||+||+.+.+.+++.|.++.+. .++|+|+|||+++.+ +.||+|++|++|++++.|+++|++
T Consensus 176 ARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~--~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 176 ARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAK--LNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999987532 368999999999987 569999999999999999999998
Q ss_pred hc-CchhHH
Q 005467 678 HK-GRLYAK 685 (695)
Q Consensus 678 ~~-~g~Y~~ 685 (695)
.+ .+.|.+
T Consensus 254 ~~p~~~~~~ 262 (382)
T TIGR03415 254 LNPANDYVA 262 (382)
T ss_pred hCcchHHHH
Confidence 65 344543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=374.43 Aligned_cols=220 Identities=32% Similarity=0.488 Sum_probs=184.8
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCc--ch
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LD 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~--i~ 520 (695)
+.|+++||+++|++ .++|+|+||+|+|||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36899999999964 3699999999999999999999999999999999999986 48999999998854 44
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCC-----cCCC-chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-----KDVK-NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-----~~~~-~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
...+|+.|+||+|++.+|+.|++||+.++.. ++.. ++.+.++++.+++.+++..+. ++. -..|||||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~---~~~--~~~LS~G~~q 157 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKL---NKS--ALGLSGGQQQ 157 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHh---cCC--cccCCHHHHH
Confidence 5678889999999999999999999987621 0111 233556677777655543221 111 1379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEee-----CCeEE
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID-----DGRII 668 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~-----~G~Iv 668 (695)
|++||||++++|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+.. ||++++|+ +|+++
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~----~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~ 233 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS----ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV 233 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEE
Confidence 99999999999999999999999999999999999998742 4899999999999865 99999998 59999
Q ss_pred Eeccchhhhhc
Q 005467 669 EVGNHAELLHK 679 (695)
Q Consensus 669 e~Gth~eLl~~ 679 (695)
+.|+++|+.+.
T Consensus 234 ~~~~~~~~~~~ 244 (259)
T PRK14260 234 EFGVTTQIFSN 244 (259)
T ss_pred EeCCHHHHhcC
Confidence 99999999764
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-44 Score=375.02 Aligned_cols=217 Identities=28% Similarity=0.478 Sum_probs=182.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCcch-hH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLD-IR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~i~-~~ 522 (695)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999974 3699999999999999999999999999999999999986 6999999999987663 45
Q ss_pred HHHhhhccccCCceeeeeeccccccccCCc--CCCchhHHH----HHHHhhHhHhHhcCCCCccccccc--cccCCccch
Q 005467 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCPK--DVKNEDIEW----AAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQ 594 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~--~~~~eei~~----A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQ 594 (695)
.+|+.|+||+|++.+|+.|++|||.++... ..+++++.. +++..++ +..+++.+.. ..|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGL-------WDAVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC-------CchhhhHhhCCcccCCHHHHH
Confidence 678899999999999999999999986311 123333322 2233332 2222233333 389999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth 673 (695)
|++||||++.+|++|||||||++||..+.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~----~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~ 246 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD----RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPT 246 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999998742 379999999999976 4999999999999999999
Q ss_pred hhhhhc
Q 005467 674 AELLHK 679 (695)
Q Consensus 674 ~eLl~~ 679 (695)
+++.+.
T Consensus 247 ~~~~~~ 252 (276)
T PRK14271 247 EQLFSS 252 (276)
T ss_pred HHHHhC
Confidence 999875
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=362.13 Aligned_cols=205 Identities=32% Similarity=0.511 Sum_probs=178.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++++||+++|+. +++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+ .+|+.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999952 468999999999999999999999999999999999999999999999987644 4678899
Q ss_pred cccCCceeee-eeccccccccCCcC-----CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~~-----~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+|. .|+.||+.++..+. ..++++.++++..++.+...+.|. .||||||||++||||++
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE---------QLSGGQRQRVALARCLV 144 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc---------cCCHHHHHHHHHHHHHh
Confidence 9999999997 59999998752111 124467778888888777776664 69999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
++|+++||||||++||.++.+.+.+.|.+..+. .++|+|+|||+++.+. .||++++|++|++++.|.
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSE--RQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999987531 3689999999999876 499999999999999875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-44 Score=380.86 Aligned_cols=214 Identities=21% Similarity=0.399 Sum_probs=181.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.++++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+ +...+|+.+
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~i 77 (301)
T TIGR03522 2 SIRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNI 77 (301)
T ss_pred EEEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhce
Confidence 3789999999963 369999999999999999999999999999999999999999999999999876 345778899
Q ss_pred ccccCCceeeee-eccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
||+||++.+|.+ |+.||+.+... ...+ .+++.++++..++.++....+ +.||||||||++||||+
T Consensus 78 g~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKI---------GQLSKGYRQRVGLAQAL 148 (301)
T ss_pred EEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCch---------hhCCHHHHHHHHHHHHH
Confidence 999999999975 99999986421 1112 223444444444443322211 37999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+.+|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++.++
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~----~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG----KDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc----CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999873 35899999999998865 999999999999999999999765
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-44 Score=373.60 Aligned_cols=214 Identities=28% Similarity=0.385 Sum_probs=181.9
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC--------CceEEEcCccCCcchh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--------DGQIYIDGFPLTDLDI 521 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~--------~G~I~idG~di~~i~~ 521 (695)
|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++..++.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999964 36999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHHhhhccccCCce-eeeeeccccccccCCcCC---------CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccC
Q 005467 522 RWLREKIGFVGQEPQ-LLQMDIKSNIMYGCPKDV---------KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLS 589 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~-LF~~TI~eNI~~g~~~~~---------~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LS 589 (695)
..+++.++||+|++. +|..|++||+.++..+.. .++++.++++..++. +.++. ..||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-----------ALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCC
Confidence 888889999999986 678899999988631111 112233444444443 33332 3799
Q ss_pred CccchhHHHHHHhh---------cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeE
Q 005467 590 GGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRI 659 (695)
Q Consensus 590 GGQkQRIaIARAll---------~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~I 659 (695)
||||||++||||++ .+|++|||||||++||+++.+.+.+.|+++.+. .++|+|+|||+++.+. .||+|
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tviiisH~~~~~~~~~d~i 225 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARD--WNLGVLAIVHDPNLAARHADRI 225 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEE
Confidence 99999999999999 599999999999999999999999999987531 2689999999999986 59999
Q ss_pred EEeeCCeEEEeccchhhhhc
Q 005467 660 VVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 660 vvL~~G~Ive~Gth~eLl~~ 679 (695)
++|++|+|++.|++++++..
T Consensus 226 ~~l~~G~i~~~g~~~~~~~~ 245 (272)
T PRK13547 226 AMLADGAIVAHGAPADVLTP 245 (272)
T ss_pred EEEECCeEEEecCHHHHcCH
Confidence 99999999999999998763
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-44 Score=369.46 Aligned_cols=219 Identities=32% Similarity=0.517 Sum_probs=185.0
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~--i~~ 521 (695)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||+++.+ .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 4789999999964 369999999999999999999999999999999999975 489999999999865 345
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCC-cCC-C----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~-~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
..+|+.++||+|++.+|+.|++||+.++.. .+. + ++++.++++.+++.+++..+ +++. -..||||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~--~~~LS~Gq~qr 154 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---LDKS--ALGLSGGQQQR 154 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---HhCC--cccCCHHHHHH
Confidence 678899999999999999999999987621 111 1 23455567777776655422 1211 13799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++++|++|+|||||++||..+...+.+.|.++. +++|+|++||++..+.. ||++++|++|++++.|+++
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~----~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK----EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTD 230 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999999999874 35899999999998765 9999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
++...
T Consensus 231 ~~~~~ 235 (250)
T PRK14266 231 QIFIN 235 (250)
T ss_pred HHHhC
Confidence 99754
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=372.44 Aligned_cols=219 Identities=30% Similarity=0.495 Sum_probs=180.7
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~--i~~ 521 (695)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999974 3699999999999999999999999999999999999974 69999999998853 445
Q ss_pred HHHHhhhccccCCceeee-eeccccccccCCc-CC-C----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 522 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~-~~-~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
..+|+.++||+|++.+|. .|++||+.++... .. + ++++.++++..++.+++... ++.. -..|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~~~--~~~LS~G~~q 155 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDR---LDKP--GGGLSGGQQQ 155 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhH---hhCC--cccCCHHHHH
Confidence 678889999999999997 5999999875210 11 1 22344455555554332211 1111 1379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEee------CCeE
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID------DGRI 667 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~------~G~I 667 (695)
|++||||++++|++|||||||++||+.+...+.+.|.++. +++|+|+|||+++.+. .||+|++|+ +|+|
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i 231 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK----QDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRL 231 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceE
Confidence 9999999999999999999999999999999999999873 2489999999999975 599999996 8999
Q ss_pred EEeccchhhhhc
Q 005467 668 IEVGNHAELLHK 679 (695)
Q Consensus 668 ve~Gth~eLl~~ 679 (695)
++.|++++++..
T Consensus 232 ~~~~~~~~~~~~ 243 (258)
T PRK14241 232 VEIDDTEKIFSN 243 (258)
T ss_pred EecCCHHHHHhC
Confidence 999999999764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=373.24 Aligned_cols=220 Identities=30% Similarity=0.490 Sum_probs=185.4
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC-----CceEEEcCccCCc--ch
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTD--LD 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-----~G~I~idG~di~~--i~ 520 (695)
+.|+++||+|+|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||+++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 36999999999964 25999999999999999999999999999999999999985 8999999998753 34
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCCc-CC-C----chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCcc
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DV-K----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~-~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQ 592 (695)
...+|+.++|++|++.+|..|+.||+.++... .. + ++++.++++..++.+++..+ .+. ..|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK-------IHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHH
Confidence 56778899999999999999999999875210 11 1 23355566666665544421 122 3799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeC-----Ce
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDD-----GR 666 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~-----G~ 666 (695)
|||++||||++++|++|||||||++||.++...+.+.|.++.+ ..++|+|+|||+++.+. .||+|++|++ |+
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~--~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~ 233 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRL--RSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQ 233 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH--hCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCce
Confidence 9999999999999999999999999999999999999998642 23689999999999986 5999999999 99
Q ss_pred EEEeccchhhhhc
Q 005467 667 IIEVGNHAELLHK 679 (695)
Q Consensus 667 Ive~Gth~eLl~~ 679 (695)
+++.|+++++...
T Consensus 234 i~~~~~~~~~~~~ 246 (261)
T PRK14258 234 LVEFGLTKKIFNS 246 (261)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999999764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-44 Score=370.27 Aligned_cols=219 Identities=28% Similarity=0.456 Sum_probs=180.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC-----CceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-----DGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-----~G~I~idG~di~~--i~~ 521 (695)
-|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.+||.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999964 36999999999999999999999999999999999999875 8999999999865 344
Q ss_pred HHHHhhhccccCCceeee-eeccccccccCC-cCC-CchhHHHHH----HHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 522 RWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDV-KNEDIEWAA----KQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~-~~eei~~A~----~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
..+|+.++|++|++.+|. .|+.||+.++.. ... .+++..+.+ +..++.+. +++.+++.+ ..|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~~~~~~--~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKDRLKTPA--TGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhhhhcCCc--ccCCHHHHH
Confidence 577889999999999998 599999987631 111 223332222 22222222 222333322 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth 673 (695)
|++||||++++|++|||||||++||..+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK----KVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPT 231 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999873 24899999999999875 999999999999999999
Q ss_pred hhhhhc
Q 005467 674 AELLHK 679 (695)
Q Consensus 674 ~eLl~~ 679 (695)
+++++.
T Consensus 232 ~~~~~~ 237 (252)
T PRK14272 232 DQLFTN 237 (252)
T ss_pred HHHHhC
Confidence 999865
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-44 Score=383.48 Aligned_cols=229 Identities=26% Similarity=0.437 Sum_probs=183.7
Q ss_pred eEEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC---CceEEEcCccCCcchhHHH
Q 005467 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~---~G~I~idG~di~~i~~~~l 524 (695)
-++++|++++|+.+. ..++++||||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.++.+++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996422 246999999999999999999999999999999999999996 9999999999998887766
Q ss_pred H----hhhccccCCc--eeee-eeccccccccC--CcCCCchhH----HHHHHHhhHhHhHhcCCCCccccccc--cccC
Q 005467 525 R----EKIGFVGQEP--QLLQ-MDIKSNIMYGC--PKDVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDD--DLLS 589 (695)
Q Consensus 525 R----~~I~~V~Qd~--~LF~-~TI~eNI~~g~--~~~~~~eei----~~A~~~a~l~~fI~~LP~G~dT~vge--~~LS 589 (695)
| +.|+||+|++ .++. .|+.+|+.... ....+.++. .++++.+ .||+++++ ++. ..||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~v-------gL~~~~~~-~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAV-------KMPEARKR-MKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-------CCCChHHH-hcCCcccCC
Confidence 4 4799999998 3544 57777775321 012233222 2233332 34544332 333 3899
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRII 668 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Iv 668 (695)
||||||++|||||+.+|++||+|||||+||..+...|.+.|.++.+. .|.|+|+|||+++.+. .||+|+||++|+|+
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~g~til~iTHdl~~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE--FNTAIIMITHDLGVVAGICDKVLVMYAGRTM 241 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH--cCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999988542 3689999999999986 59999999999999
Q ss_pred Eeccchhhhhc-CchhHH-HH
Q 005467 669 EVGNHAELLHK-GRLYAK-LV 687 (695)
Q Consensus 669 e~Gth~eLl~~-~g~Y~~-l~ 687 (695)
|.|+++++.+. ...|.+ |+
T Consensus 242 e~g~~~~i~~~p~~pyt~~l~ 262 (330)
T PRK09473 242 EYGNARDVFYQPSHPYSIGLL 262 (330)
T ss_pred EECCHHHHHhCCCCHHHHHHH
Confidence 99999999875 334543 44
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-44 Score=387.23 Aligned_cols=213 Identities=29% Similarity=0.486 Sum_probs=186.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc----hhHHHH
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIRWLR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i----~~~~lR 525 (695)
|++ ||+++|++ . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+. +...++
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999964 2 23 99999999999999999999999999999999999999999999988653 234568
Q ss_pred hhhccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
+.++||+|++.+|. .|++|||.++. ....++++.++++..++.++.+..| ..||||||||++|||||++
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGM-AKSMVAQFDKIVALLGIEPLLDRYP---------GSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhh-hhhhHHHHHHHHHHcCCchhhhCCc---------ccCCHHHHHHHHHHHHHHc
Confidence 89999999999996 69999999984 3445667888888888877766655 3699999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcC
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
+|++|+||||||+||+.+.+.+.+.|+++.+. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLARE--INIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999987542 36899999999998754 9999999999999999999998753
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-44 Score=375.50 Aligned_cols=220 Identities=31% Similarity=0.457 Sum_probs=181.4
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCcc--h
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--D 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~i--~ 520 (695)
..|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.+||.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999964 359999999999999999999999999999999999865 4999999999988643 3
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCCc-CCC-----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-DVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~~~-----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
...+|+.|+||+|++.+|..|+.|||.++... ... ++++.++++..++.+.+. +.++..+ ..|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~~~~--~~LSgGq~q 189 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---DRLDKNA--LGLSGGQQQ 189 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---hHhhCCh--hhCCHHHHH
Confidence 34578899999999999999999999986211 111 123444555555432221 1122211 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth 673 (695)
|++||||++.+|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~----~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR----GSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999874 24799999999999864 999999999999999999
Q ss_pred hhhhhc
Q 005467 674 AELLHK 679 (695)
Q Consensus 674 ~eLl~~ 679 (695)
+++.++
T Consensus 266 ~~~~~~ 271 (286)
T PRK14275 266 AQLFTN 271 (286)
T ss_pred HHHHhC
Confidence 999865
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-44 Score=371.98 Aligned_cols=219 Identities=29% Similarity=0.465 Sum_probs=184.7
Q ss_pred cceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCC----
Q 005467 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLT---- 517 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~---- 517 (695)
.+.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|++||.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 356999999999974 3699999999999999999999999999999999999975 7999999998874
Q ss_pred cchhHHHHhhhccccCCceeeeeeccccccccCC-cC-----CCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccC
Q 005467 518 DLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KD-----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLS 589 (695)
Q Consensus 518 ~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~-----~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LS 589 (695)
..+...+|+.|+|++|++.+|.+|++|||.++.. .. ..++++.++++.+++.+.+. +..+. ..||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 3345577889999999999999999999987621 11 12345566666665543322 22332 3799
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRII 668 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Iv 668 (695)
||||||++||||++++|++|||||||++||.++.+.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|+++
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~----~~~tiiivth~~~~~~~~~d~i~~l~~G~i~ 239 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLK----NKVTILIVTHNMQQAARVSDYTAYMYMGELI 239 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH----hCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999874 2489999999999985 59999999999999
Q ss_pred Eeccchhhhhc
Q 005467 669 EVGNHAELLHK 679 (695)
Q Consensus 669 e~Gth~eLl~~ 679 (695)
+.|+++++...
T Consensus 240 ~~g~~~~~~~~ 250 (265)
T PRK14252 240 EFGATDTIFIK 250 (265)
T ss_pred EeCCHHHHHhC
Confidence 99999999753
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-44 Score=382.45 Aligned_cols=226 Identities=23% Similarity=0.373 Sum_probs=185.2
Q ss_pred eEEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc----CCCceEEEcCccCCcchhHH
Q 005467 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~----p~~G~I~idG~di~~i~~~~ 523 (695)
-|+++|++++|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+.+ |++|+|++||+++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999996421 2469999999999999999999999999999999999986 58999999999998887666
Q ss_pred HH----hhhccccCCcee--e-eeeccccccccCC---c------C--CCchhHHHHHHHhhHhHh---HhcCCCCcccc
Q 005467 524 LR----EKIGFVGQEPQL--L-QMDIKSNIMYGCP---K------D--VKNEDIEWAAKQAYVHEF---ILSLPCGYETL 582 (695)
Q Consensus 524 lR----~~I~~V~Qd~~L--F-~~TI~eNI~~g~~---~------~--~~~eei~~A~~~a~l~~f---I~~LP~G~dT~ 582 (695)
++ +.|+||+|++.. + ..||.+|+..... . + ..++++.++++.+++++. ..+.|
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p------ 156 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP------ 156 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc------
Confidence 54 479999999973 3 3589999864210 0 0 012355667777777532 23333
Q ss_pred ccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEE
Q 005467 583 VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVV 661 (695)
Q Consensus 583 vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~Ivv 661 (695)
..||||||||++|||||+.+|++||||||||+||+.+...|.+.|.++.+. .|.|+|+|||+++.+.. ||+|+|
T Consensus 157 ---~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~--~g~tii~itHdl~~v~~~~dri~v 231 (330)
T PRK15093 157 ---YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN--NNTTILLISHDLQMLSQWADKINV 231 (330)
T ss_pred ---hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHhCCEEEE
Confidence 379999999999999999999999999999999999999999999988542 36899999999999965 999999
Q ss_pred eeCCeEEEeccchhhhhc-CchhHH
Q 005467 662 IDDGRIIEVGNHAELLHK-GRLYAK 685 (695)
Q Consensus 662 L~~G~Ive~Gth~eLl~~-~g~Y~~ 685 (695)
|++|+|+|.|+.+++.+. ...|.+
T Consensus 232 m~~G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 232 LYCGQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EECCEEEEECCHHHHHhCCCCHHHH
Confidence 999999999999999865 345654
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=370.44 Aligned_cols=219 Identities=27% Similarity=0.393 Sum_probs=186.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCcc--hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDL--DI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~i--~~ 521 (695)
.+.+++++++|++ .++|+|+||+|+|||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+. +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4789999999963 3699999999999999999999999999999999999987 799999999998643 44
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc----CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~----~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
..+|+.++||+|++.+|..|+.|||.++... ...++++.++++.+++.+.+....+ . .-++||||||||++
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~---~--~~~~LS~G~~qrv~ 159 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLK---V--SGLSLSGGQQQRLC 159 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhh---C--CcccCCHHHHHHHH
Confidence 5678899999999999999999999987311 1123467777888877655543211 1 11479999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEee--------CCeEE
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID--------DGRII 668 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~--------~G~Iv 668 (695)
||||++++|++|||||||++||+.+...+.+.|.++. +++|+|+|||+++.+. .||+|++|+ +|+++
T Consensus 160 laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~----~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 160 IARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK----KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh----cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 9999999999999999999999999999999999873 2589999999999875 599999996 89999
Q ss_pred Eeccchhhhhc
Q 005467 669 EVGNHAELLHK 679 (695)
Q Consensus 669 e~Gth~eLl~~ 679 (695)
+.|+++++++.
T Consensus 236 ~~g~~~~~~~~ 246 (261)
T PRK14263 236 EMGPTAQIFQN 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999999865
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=380.69 Aligned_cols=206 Identities=26% Similarity=0.418 Sum_probs=173.7
Q ss_pred ecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCcee
Q 005467 458 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL 537 (695)
Q Consensus 458 ~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~L 537 (695)
+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.||||+|++.+
T Consensus 2 ~y~~---~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~ 77 (302)
T TIGR01188 2 VYGD---FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASV 77 (302)
T ss_pred eeCC---eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCC
Confidence 5643 369999999999999999999999999999999999999999999999999876 345678899999999999
Q ss_pred eee-eccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEE
Q 005467 538 LQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLL 611 (695)
Q Consensus 538 F~~-TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILIL 611 (695)
|.. |++||+.+... ...+ ++++.++++..++.+.....+ +.||||||||++|||||+.+|++|||
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la~al~~~p~lllL 148 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPV---------GTYSGGMRRRLDIAASLIHQPDVLFL 148 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCch---------hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 875 99999987521 1112 233445555555543322211 37999999999999999999999999
Q ss_pred eccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 612 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 612 DEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
||||++||+++.+.+.+.|.++.+ +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 149 DEPt~gLD~~~~~~l~~~l~~~~~---~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 149 DEPTTGLDPRTRRAIWDYIRALKE---EGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999998753 36899999999999865 999999999999999999999765
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-44 Score=365.73 Aligned_cols=213 Identities=31% Similarity=0.523 Sum_probs=184.1
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|++ ++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|++||.++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999963 38999999999999999999999999999999999999999999999999877654 367899
Q ss_pred cccCCceeee-eeccccccccCCc-CC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~-~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.+|. .|+.||+.++... .. .++++.++++..++.+++.+.| ..||||||||++||||++
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~ 145 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP---------ETLSGGEQQRVAIARALV 145 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc---------ccCCHHHHHHHHHHHHHH
Confidence 9999999995 7999999876311 11 2234556677777766665544 369999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
++|++|+|||||++||..+.+.+.+.|+++.+ ..++|+|++||++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~--~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRK--EFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--hcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 99999999999999999999999999998743 136899999999999865 999999999999999999999875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=363.83 Aligned_cols=215 Identities=31% Similarity=0.510 Sum_probs=184.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCc---cCCcchhHHHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLDIRWLR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~---di~~i~~~~lR 525 (695)
.|+++|++..|+. .++++||||+|+.||.+|+.||||||||||+++|+|+..|++|.|.+||. |..+.. .-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 4789999999975 36999999999999999999999999999999999999999999999999 555533 334
Q ss_pred hhhccccCCceee-eeeccccccccCC-----c--CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 526 EKIGFVGQEPQLL-QMDIKSNIMYGCP-----K--DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 526 ~~I~~V~Qd~~LF-~~TI~eNI~~g~~-----~--~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
++||+|+|+.-|| +.||+|||+||-+ + ...+.++.+-++.+++..+-+.-|. .||||||||+|
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~---------QLSGGQrQRVA 147 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA---------QLSGGQRQRVA 147 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCch---------hcChHHHHHHH
Confidence 6899999999998 6899999999941 1 1223455556777777666555553 59999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eL 676 (695)
+|||+..+|++|+||||.+|||++-.+.+.+-|+++... -|.|+++|||+...+ +.||||+||++|+|...|+++|.
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~--~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR--LGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHh--hCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 999999999999999999999999999999888887643 368999999999876 56999999999999999999999
Q ss_pred hhc
Q 005467 677 LHK 679 (695)
Q Consensus 677 l~~ 679 (695)
...
T Consensus 226 ~~~ 228 (345)
T COG1118 226 YDH 228 (345)
T ss_pred hcC
Confidence 765
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-44 Score=383.92 Aligned_cols=219 Identities=28% Similarity=0.499 Sum_probs=182.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...|+.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4899999999974 36999999999999999999999999999999999999999999999999997654 4678899
Q ss_pred ccccCCceee-eeeccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 529 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 529 ~~V~Qd~~LF-~~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
|||||++.+| ..|+.||+.+... ...+.++..+.++. +-++ ..|++..++.++ +||||||||++|||||+.+|
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~-~~L~~~~~~~~~--~LS~G~kqrv~lA~aL~~~P 191 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEF-ARLESKADARVS--DLSGGMKRRLTLARALINDP 191 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHH-cCCchhhCCChh--hCCHHHHHHHHHHHHHhcCC
Confidence 9999999986 5799999986311 11222222222111 1111 145555555543 79999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
++|||||||++||+.+...+.+.|.++.+ +|+|+|++||+++.+.. ||+|++|++|+|+..|+.+++.++
T Consensus 192 ~lLiLDEPt~gLD~~~r~~l~~~l~~l~~---~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 192 QLLILDEPTTGLDPHARHLIWERLRSLLA---RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999998753 37899999999999865 999999999999999999999764
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-44 Score=361.53 Aligned_cols=207 Identities=30% Similarity=0.472 Sum_probs=176.0
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH---HHH
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~---~lR 525 (695)
++++||+++|++.. .+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|++||.++.+++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999996421 14699999999999999999999999999999999999999999999999998776643 468
Q ss_pred hhhccccCCceeee-eeccccccccCC--cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCP--KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~--~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
+.++|++|++.+|. .|+.||+.++.. +..+. +++.++++..++.+++...| ..||||||||++|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qrv~l 152 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP---------HNLSGGQKQRVAI 152 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh---------hhCCHHHHHHHHH
Confidence 89999999999997 699999987631 11222 23455566666655555544 3699999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeE
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 667 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~I 667 (695)
|||++++|++|||||||++||.++.+.+.+.|.++.++ .++|+|+|||+++..+.||+|++|++|++
T Consensus 153 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 153 ARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE--QGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHH--cCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999987542 36899999999998778999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=370.85 Aligned_cols=232 Identities=30% Similarity=0.462 Sum_probs=187.0
Q ss_pred eEEEEEEeeecCCC------CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh-
Q 005467 449 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI- 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~------~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~- 521 (695)
-|+++||+|+|++. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 37899999999731 02479999999999999999999999999999999999999999999999999987765
Q ss_pred --HHHHhhhccccCCce--ee-eeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccc-cc--cccCCccc
Q 005467 522 --RWLREKIGFVGQEPQ--LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV-DD--DLLSGGQK 593 (695)
Q Consensus 522 --~~lR~~I~~V~Qd~~--LF-~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~v-ge--~~LSGGQk 593 (695)
..+|+.++||+|++. ++ ..|+.||+.+.. .... ++..+.....+++.++.+ |+++.+ .. ..||||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~-~~~~--~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge~ 157 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPL-RHLL--SLDKAERLARASEMLRAV--DLDDSVLDKRPPQLSGGQL 157 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHH-Hhhc--cCCHHHHHHHHHHHHHHc--CCChhHhhCCCccCChHHH
Confidence 356889999999983 33 478999987541 1100 011122233445555543 565433 22 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++.+|++|||||||++||.++...+.+.|+++.+. .++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 158 qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~--~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 158 QRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ--FGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH--cCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 9999999999999999999999999999999999999987531 26899999999999974 99999999999999999
Q ss_pred chhhhhcCchhHHHH
Q 005467 673 HAELLHKGRLYAKLV 687 (695)
Q Consensus 673 h~eLl~~~g~Y~~l~ 687 (695)
++|+...++.|..-+
T Consensus 236 ~~~~~~~~~~~~~~~ 250 (268)
T PRK10419 236 VGDKLTFSSPAGRVL 250 (268)
T ss_pred hhhccCCCCHHHHHH
Confidence 999987666554433
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=374.06 Aligned_cols=219 Identities=28% Similarity=0.487 Sum_probs=183.0
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~--i~~ 521 (695)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.+ .+.
T Consensus 39 ~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 39 VIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred eEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 5899999999964 369999999999999999999999999999999999997 689999999999864 345
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCc-C---CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPK-D---VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~-~---~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
..+|+.++||+|++.+|..|++||+.++... . ..++++.++++..++.+.+... ++.. -..||||||||++
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~---~~~~--~~~LSgGe~qrv~ 190 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQ---LDSS--GLDLSGGQQQRLC 190 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHH---HhCC--cccCCHHHHHHHH
Confidence 6778899999999999999999999875210 1 1234566666666654333211 1111 1379999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEE-EeeCCeEEEeccchh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIV-VIDDGRIIEVGNHAE 675 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~Iv-vL~~G~Ive~Gth~e 675 (695)
||||++++|++|||||||++||.++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+++ +|++|+|++.|++++
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~----~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~ 266 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE----EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDK 266 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc----CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999998843 3799999999999865 99975 579999999999999
Q ss_pred hhhc
Q 005467 676 LLHK 679 (695)
Q Consensus 676 Ll~~ 679 (695)
+.++
T Consensus 267 ~~~~ 270 (285)
T PRK14254 267 IFEN 270 (285)
T ss_pred HHhC
Confidence 8764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=367.49 Aligned_cols=226 Identities=27% Similarity=0.419 Sum_probs=181.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc-----CCcchhHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-----LTDLDIRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d-----i~~i~~~~ 523 (695)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999974 369999999999999999999999999999999999999999999999998 77765544
Q ss_pred ----HHhhhccccCCce--ee-eeeccccccccCC-cC-CCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCcc
Q 005467 524 ----LREKIGFVGQEPQ--LL-QMDIKSNIMYGCP-KD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592 (695)
Q Consensus 524 ----lR~~I~~V~Qd~~--LF-~~TI~eNI~~g~~-~~-~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQ 592 (695)
+++.++||+|++. ++ ..|+.+||.+... .. .+.+++. ..++++++.++-+ ++..+. ..|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 3567999999984 33 3578889865310 01 1111221 1234556655432 123333 3899999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
|||++||||++++|++|||||||++||+++++.+.+.|.++.+. .|+|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~ 234 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE--LGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999887431 3689999999999997 59999999999999999
Q ss_pred cchhhhhcC-chhHH
Q 005467 672 NHAELLHKG-RLYAK 685 (695)
Q Consensus 672 th~eLl~~~-g~Y~~ 685 (695)
+++++..+. ..|.+
T Consensus 235 ~~~~~~~~~~~~~~~ 249 (258)
T PRK11701 235 LTDQVLDDPQHPYTQ 249 (258)
T ss_pred CHHHHhcCCCCHHHH
Confidence 999998653 34544
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=370.56 Aligned_cols=219 Identities=27% Similarity=0.424 Sum_probs=184.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~--i~~ 521 (695)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||+++.+ .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 6999999999974 3699999999999999999999999999999999999864 69999999999864 345
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCcC----CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~----~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
..+|+.|+||+|++.+|+.|+.|||.++.... ..++++.++++.+++.+++... .+.. -..||||||||++
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~~~--~~~LSgGq~qrv~ 171 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDK---LKEK--GTALSGGQQQRLC 171 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHH---hcCC--cccCCHHHHHHHH
Confidence 56788999999999999999999999863110 1234455667777765544321 1111 1379999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEee---------CCeE
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID---------DGRI 667 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~---------~G~I 667 (695)
|||||+++|++|||||||++||..+...+.+.|.++. +++|+|+|||+++.+. .||+|++|+ +|++
T Consensus 172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~----~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~ 247 (274)
T PRK14265 172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK----EQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL 247 (274)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceE
Confidence 9999999999999999999999999999999999884 2489999999999885 599999997 8999
Q ss_pred EEeccchhhhhc
Q 005467 668 IEVGNHAELLHK 679 (695)
Q Consensus 668 ve~Gth~eLl~~ 679 (695)
++.|+.+|+.+.
T Consensus 248 ~~~g~~~~~~~~ 259 (274)
T PRK14265 248 VEFSPTEQMFGS 259 (274)
T ss_pred EEeCCHHHHHhC
Confidence 999999999764
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=368.91 Aligned_cols=227 Identities=26% Similarity=0.448 Sum_probs=185.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC------ccCCcchhH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG------FPLTDLDIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG------~di~~i~~~ 522 (695)
.|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| .++.+++..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5899999999974 3699999999999999999999999999999999999999997666655 677777777
Q ss_pred HHHhhhccccCCceeeee-eccccccccCCc-CC-Cchh----HHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 523 WLREKIGFVGQEPQLLQM-DIKSNIMYGCPK-DV-KNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~~-TI~eNI~~g~~~-~~-~~ee----i~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
.+|+.++|++|++.+|.+ |+.|||.++... .. .+++ +.++++..++++++... .+.. -..||||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~--~~~LS~G~~qr 161 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDR---LNSP--ASQLSGGQQQR 161 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhh---hcCC--cccCCHHHHHH
Confidence 889999999999999975 999999976321 11 1222 34455555554332111 1111 13799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~ 674 (695)
++||||++++|++|||||||++||..+++.+.+.|.++. +++|+|++||+++.+ +.||++++|++|++++.|+++
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~----~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~ 237 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK----NEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSN 237 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh----cCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999998873 248999999999998 569999999999999999999
Q ss_pred hhhhc-CchhHHHH
Q 005467 675 ELLHK-GRLYAKLV 687 (695)
Q Consensus 675 eLl~~-~g~Y~~l~ 687 (695)
|+.+. ...|.+.|
T Consensus 238 ~~~~~~~~~~~~~~ 251 (257)
T PRK14246 238 EIFTSPKNELTEKY 251 (257)
T ss_pred HHHhCCCcHHHHHH
Confidence 99875 33455544
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=362.73 Aligned_cols=212 Identities=29% Similarity=0.436 Sum_probs=169.7
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc---CCCceEEEcCccCCcchhHHHH
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~---p~~G~I~idG~di~~i~~~~lR 525 (695)
++|+||+|+|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999998642 2579999999999999999999999999999999999999 99999999998875 34678
Q ss_pred hhhccccCCceeeee-eccccccccCCcCCCchhHHHHHHHhhHhH-hHhcCCCCccccccc---cccCCccchhHHHHH
Q 005467 526 EKIGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDD---DLLSGGQKQRIAIAR 600 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~-fI~~LP~G~dT~vge---~~LSGGQkQRIaIAR 600 (695)
+.++|++|++.+|.+ |++||+.++.. ....+...++.+...+++ .++ ....+.+.+ ..||||||||++|||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~LS~G~~qrl~lar 156 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAI-LRLPRKSSDAIRKKRVEDVLLR---DLALTRIGGNLVKGISGGERRRVSIAV 156 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHH-hhcccccchHHHHHHHHHHHHH---hhcchhhhcccccCcCHHHHHHHHHHH
Confidence 899999999999987 99999997621 111111111111111222 222 222223322 379999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeec-cc-ccccCeEEEeeCCeEEEec
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-ST-IKAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl-st-i~~aD~IvvL~~G~Ive~G 671 (695)
|++++|++|||||||++||+.+.+.+.+.|.+..+ +++|+|++||++ .. .+.||+|++|++|++++.|
T Consensus 157 al~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~---~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 157 QLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR---RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999998743 368999999998 34 4679999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=367.18 Aligned_cols=206 Identities=30% Similarity=0.443 Sum_probs=172.0
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... ++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 689999999964 3699999999999999999999999999999999999999999999999988643 24589
Q ss_pred cccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
|++|++.+|. .|++||+.++.. .... ++++.++++..++.+.....| .+||||||||++||||++
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrl~laral~ 144 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYI---------WQLSGGQRQRVGIARALA 144 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999887 699999987521 1112 223445555555544433322 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEee--CCeEEEeccch
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID--DGRIIEVGNHA 674 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~--~G~Ive~Gth~ 674 (695)
++|++|||||||++||+++...+.+.|.++.+ ..|+|+|+|||+++.+.. ||+|++|+ +|+|++.++.+
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQ--ETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999988743 136899999999999854 99999998 59999998653
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=367.47 Aligned_cols=217 Identities=31% Similarity=0.520 Sum_probs=179.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc--C---CCceEEEcCccCCc--chh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--P---SDGQIYIDGFPLTD--LDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~--p---~~G~I~idG~di~~--i~~ 521 (695)
-|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ | ++|+|.+||.++.+ .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999974 369999999999999999999999999999999999975 5 59999999998864 344
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCC-cCCC-----chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccc
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVK-----NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQK 593 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~~-----~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQk 593 (695)
..+++.++||+|++.+|..|+++|+.++.. .... ++++.++++.+++.+.+. ..... ..||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence 567889999999999999999999987621 1111 123344445554432221 12222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++++|++|||||||++||.++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~----~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD----QYTIILVTHSMHQASRISDKTAFFLTGNLIEFAD 230 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh----CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999998743 479999999999986 599999999999999999
Q ss_pred chhhhhc
Q 005467 673 HAELLHK 679 (695)
Q Consensus 673 h~eLl~~ 679 (695)
.++....
T Consensus 231 ~~~~~~~ 237 (252)
T PRK14255 231 TKQMFLN 237 (252)
T ss_pred HHHHhcC
Confidence 9888764
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=364.61 Aligned_cols=222 Identities=25% Similarity=0.329 Sum_probs=172.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh--hcCCCceEEEcCccCCcchhHHHH-h
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWLR-E 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl--y~p~~G~I~idG~di~~i~~~~lR-~ 526 (695)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+++....+ +
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999974 3699999999999999999999999999999999999 479999999999999888776655 5
Q ss_pred hhccccCCceeeee-eccccccccCC--cCCCchh-HHHHHHHhhHhHhHh--cCCCCccccccccccCCccchhHHHHH
Q 005467 527 KIGFVGQEPQLLQM-DIKSNIMYGCP--KDVKNED-IEWAAKQAYVHEFIL--SLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~-TI~eNI~~g~~--~~~~~ee-i~~A~~~a~l~~fI~--~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
.++||+|++.++.. |..+|+.+... .....++ +...-....+.+.++ .+|+++.+......||||||||++|||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar 158 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 158 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence 79999999987754 33333221100 0000000 000000011122222 456565554443479999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc--cCeEEEeeCCeEEEeccchhhh
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~--aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|++++|++|||||||++||.++.+.+.+.|.++.+ .++|+|+|||+++.+.. ||+|++|++|++++.|++++..
T Consensus 159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 234 (248)
T PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRD---GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 234 (248)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHHH
Confidence 99999999999999999999999999999988743 36899999999999876 8999999999999999998553
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=358.28 Aligned_cols=207 Identities=27% Similarity=0.423 Sum_probs=177.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 579999999974 36999999999999999999999999999999999999999999999998875422 35799
Q ss_pred cccCCceeee-eeccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ 607 (695)
|++|++.+|. .|++||+.++.. ...+++++.++++..++.+..+.-| ..||||||||++||||++++|+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~~rv~laral~~~p~ 144 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKA---------KQFSLGMKQRLGIAIALLNHPK 144 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhH---------hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999886 699999987521 1234556677777777765544322 3799999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchh
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~e 675 (695)
+|+|||||++||+++.+.+.+.|.++.+ +++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 145 llllDEP~~~LD~~~~~~l~~~L~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 145 LLILDEPTNGLDPIGIQELRELIRSFPE---QGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EEEECCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999998742 3689999999999985 599999999999999998765
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=373.94 Aligned_cols=218 Identities=30% Similarity=0.493 Sum_probs=182.1
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-----CCCceEEEcCccCCcc--h
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-----PSDGQIYIDGFPLTDL--D 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-----p~~G~I~idG~di~~i--~ 520 (695)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||.++.+. +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999974 369999999999999999999999999999999999996 6899999999998643 3
Q ss_pred hHHHHhhhccccCCceeeeeeccccccccCCcC------------------CCchhHHHHHHHhhHhHhHhcCCCCcccc
Q 005467 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD------------------VKNEDIEWAAKQAYVHEFILSLPCGYETL 582 (695)
Q Consensus 521 ~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~------------------~~~eei~~A~~~a~l~~fI~~LP~G~dT~ 582 (695)
...+|+.|+||+|++.+|+.|++||+.++.... ..++++.++++.+++ +.++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL-------WDEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC-------chhhhHH
Confidence 567788999999999999999999999862110 012233444444443 3333344
Q ss_pred ccc--cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeE
Q 005467 583 VDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRI 659 (695)
Q Consensus 583 vge--~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~I 659 (695)
+.. ..||||||||++|||||+++|+||||||||++||..+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~----~~tiiivtH~~~~i~~~~d~i 269 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE----EYTVVVVTHNMQQAARISDQT 269 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc----CCEEEEEEcCHHHHHHhcCEE
Confidence 443 38999999999999999999999999999999999999999999998743 3799999999999864 9997
Q ss_pred -EEeeCCeEEEeccchhhhhc
Q 005467 660 -VVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 660 -vvL~~G~Ive~Gth~eLl~~ 679 (695)
++|++|++++.|+++++.+.
T Consensus 270 ~~~l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 270 AVFLTGGELVEYDDTDKIFEN 290 (305)
T ss_pred EEEecCCEEEEeCCHHHHHhC
Confidence 57899999999999999764
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=381.40 Aligned_cols=210 Identities=32% Similarity=0.520 Sum_probs=177.9
Q ss_pred EEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch----hHHHHhhhc
Q 005467 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLREKIG 529 (695)
Q Consensus 454 nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~----~~~lR~~I~ 529 (695)
|++++|++ . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|+.++
T Consensus 4 ~l~~~~~~---~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999964 2 34 999999999999999999999999999999999999999999999986532 345678999
Q ss_pred cccCCceeee-eeccccccccCCcCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
||+|++.+|. .|++||+.++. .... ++++.++++..++.++.+..| ..||||||||++|||||+.
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGM-KRARPSERRISFERVIELLGIGHLLGRLP---------GRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHh-hccChhHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHHc
Confidence 9999999997 59999999873 2222 123555566666555544433 3799999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcC
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
+|++|+|||||++||+.+.+.+.+.|.++.+. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+.
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~--~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAE--FGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 99999999999999999999999999987532 36899999999999865 9999999999999999999998653
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-43 Score=365.92 Aligned_cols=212 Identities=25% Similarity=0.412 Sum_probs=175.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRNG--HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecCC--cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 48999999999632 469999999999999999999999999999999999999999999999988742 1223469
Q ss_pred ccccCCcee---eeeeccccccccCCc---------CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhH
Q 005467 529 GFVGQEPQL---LQMDIKSNIMYGCPK---------DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (695)
Q Consensus 529 ~~V~Qd~~L---F~~TI~eNI~~g~~~---------~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRI 596 (695)
+|++|++.+ +..++++|+.++... ...++++.++++..++.++.+..+ ..||||||||+
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgG~~qrv 151 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI---------GELSGGQKKRV 151 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc---------ccCCHHHHHHH
Confidence 999999865 456789998764210 011234555667776665543322 36999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~e 675 (695)
+||||++++|++|||||||++||+++.+.+.+.|.++.+ +|+|+|+|||+++.+. .||+++++ +|++++.|++++
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~---~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD---EGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHh
Confidence 999999999999999999999999999999999998743 3689999999998875 59999777 899999999999
Q ss_pred hhh
Q 005467 676 LLH 678 (695)
Q Consensus 676 Ll~ 678 (695)
+..
T Consensus 228 ~~~ 230 (272)
T PRK15056 228 TFT 230 (272)
T ss_pred ccC
Confidence 864
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=362.79 Aligned_cols=227 Identities=24% Similarity=0.404 Sum_probs=183.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC----CCceEEEcCccCCcchhHHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p----~~G~I~idG~di~~i~~~~l 524 (695)
.|+++||+|+| + +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||+++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 3 3699999999999999999999999999999999999999 999999999988632 223
Q ss_pred HhhhccccCCce-eee--eeccccccccC---CcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhH
Q 005467 525 REKIGFVGQEPQ-LLQ--MDIKSNIMYGC---PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRI 596 (695)
Q Consensus 525 R~~I~~V~Qd~~-LF~--~TI~eNI~~g~---~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRI 596 (695)
++.|+||+|++. .|. .|+.+|+.+.. .....++++.++++..++.++ ++.++. ..||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999985 444 57778875420 012234566777777776542 112222 37999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~e 675 (695)
+||||++++|++|||||||++||.++.+.+.+.|+++.+. .|+|+|++||+++.+. .||++++|++|++++.|+.++
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 227 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK--RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVET 227 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh--cCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999999987431 3689999999999985 599999999999999999999
Q ss_pred hhhcC-c-hhHHHHhhhc
Q 005467 676 LLHKG-R-LYAKLVKRQT 691 (695)
Q Consensus 676 Ll~~~-g-~Y~~l~~~q~ 691 (695)
+.++. . ..+.++..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~ 245 (254)
T PRK10418 228 LFNAPKHAVTRSLVSAHL 245 (254)
T ss_pred HhhCCCCHHHHHHHHhhh
Confidence 98653 2 3444665543
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-43 Score=369.49 Aligned_cols=217 Identities=31% Similarity=0.521 Sum_probs=187.7
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+.+|++ ++.+|+||||+|++||++|++|||||||||++|+|+|+..|++|+|.++|.|..+- ...+|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999973 14699999999999999999999999999999999999999999999999988764 77889999
Q ss_pred ccccCCceeee-eeccccccccCC----c-CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP----K-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~----~-~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||||++.++. -|++||+.|.+. + +..++++.+.++..++.+.-.... +.||+|||||++||+||
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKV---------RTLSGGMKQRLSIALAL 151 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcch---------hhcCHHHHHHHHHHHHH
Confidence 99999999775 599999987521 1 122456777888887765221111 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+.+|++|||||||++||+.+...+.+.|+++.+. .++||++.||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~--g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKE--GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC--CCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999998653 23799999999999987 999999999999999999998765
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=342.55 Aligned_cols=171 Identities=34% Similarity=0.644 Sum_probs=157.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999974 36999999999999999999999999999999999999999999999999987765 67788999
Q ss_pred cccCCceeeee-eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcE
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~I 608 (695)
||+|++.+|.+ |++||+. ||||||||++||||++++|++
T Consensus 77 ~~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~i 116 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPEL 116 (173)
T ss_pred EEecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCE
Confidence 99999998876 9998874 999999999999999999999
Q ss_pred EEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeE
Q 005467 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRI 667 (695)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~I 667 (695)
|+|||||++||..+.+.+.+.|+++.+ +|.|+|++||+.+.+. .||+|++|++|++
T Consensus 117 lllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 117 LILDEPTSGLDPESRREFWELLRELKK---EGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999998753 3689999999999887 5999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=343.36 Aligned_cols=174 Identities=45% Similarity=0.695 Sum_probs=159.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch--hHHHHhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWLREK 527 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~--~~~lR~~ 527 (695)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 579999999964 36999999999999999999999999999999999999999999999999998776 5678889
Q ss_pred hccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
++|++|++.+|. .|++||+.+. ||||||||++||||++++|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 999999999885 5999998753 9999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCe
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGR 666 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~ 666 (695)
+++||||||++||+.+...+.+.|+++.+. .++|+|++||++..+. .||+|++|++|+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQ--LGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999987531 2589999999999998 599999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=349.06 Aligned_cols=192 Identities=26% Similarity=0.432 Sum_probs=162.7
Q ss_pred EEEEEEeeecCCC-CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc---CCCceEEEcCccCCcchhHHHH
Q 005467 450 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~---p~~G~I~idG~di~~i~~~~lR 525 (695)
+.++||+|+|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.++...+ ...|
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 6899999999853 34579999999999999999999999999999999999999 89999999999988765 4567
Q ss_pred hhhccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
+.++|++|++.+|. .|++|||.++. ... .+..+ ..||||||||++||||+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~--~~~-----------------------~~~~~--~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFAL--RCK-----------------------GNEFV--RGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhh--hhc-----------------------cccch--hhCCHHHHHHHHHHHHHhh
Confidence 88999999998887 59999998762 110 11110 3699999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeee-cccc-cccCeEEEeeCCeEEEec
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR-LSTI-KAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHr-lsti-~~aD~IvvL~~G~Ive~G 671 (695)
+|++|||||||++||+++++.+.+.|.++.+. .+.|+|+++|+ ++.+ +.||+|++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADV--LKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999987532 24677776655 4555 569999999999998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=359.40 Aligned_cols=227 Identities=28% Similarity=0.417 Sum_probs=180.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc-----CCcchhHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-----LTDLDIRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d-----i~~i~~~~ 523 (695)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.+ +.+++...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999974 359999999999999999999999999999999999999999999999988 76665543
Q ss_pred ----HHhhhccccCCcee---eeeeccccccccCC-cC-CCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCcc
Q 005467 524 ----LREKIGFVGQEPQL---LQMDIKSNIMYGCP-KD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592 (695)
Q Consensus 524 ----lR~~I~~V~Qd~~L---F~~TI~eNI~~g~~-~~-~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQ 592 (695)
+++.|+|++|++.+ +..|+.+|+.+... .. ....+ ....++++++.++-+ ++.... ..|||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~l~~l~l~-~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGN-----IRAAAHDWLEEVEID-PTRIDDLPRAFSGGM 153 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHH-----HHHHHHHHHHHcCCC-hhhhhcCchhcCHHH
Confidence 34579999999852 24578888864310 00 01111 123445566665321 123333 3799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
|||++||||++++|++|||||||++||+.+.+.+.+.|.+..+. .+.|+|+|||++..+. .||++++|++|++++.|
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~--~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~ 231 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD--LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999886431 3689999999999987 49999999999999999
Q ss_pred cchhhhhc-CchhHHH
Q 005467 672 NHAELLHK-GRLYAKL 686 (695)
Q Consensus 672 th~eLl~~-~g~Y~~l 686 (695)
+++++..+ ...|.++
T Consensus 232 ~~~~~~~~~~~~~~~~ 247 (253)
T TIGR02323 232 LTDQVLDDPQHPYTQL 247 (253)
T ss_pred CHHHHhcCCCCHHHHH
Confidence 99999764 3345443
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-43 Score=353.25 Aligned_cols=202 Identities=32% Similarity=0.513 Sum_probs=166.1
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc----hhHHHHh
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL----DIRWLRE 526 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i----~~~~lR~ 526 (695)
.+ ||+++|++. .+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +...+|+
T Consensus 3 ~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 44 999999752 34 99999999 99999999999999999999999999999999999988643 2345678
Q ss_pred hhccccCCceeee-eeccccccccCCcCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
.++||+|++.+|. .|++||+.++. .... ++++.++++..++.+.....| ..||||||||++||||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~a 145 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGL-KRKRNREDRISVDELLDLLGLDHLLNRYP---------AQLSGGEKQRVALARA 145 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHH-hhCCHHHHHHHHHHHHHHcCCHhHhhcCc---------ccCCHHHHHHHHHHHH
Confidence 9999999999986 59999998863 2211 223334444444333222211 3799999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
++++|++|||||||++||+++.+.+.+.|.++.+. .|+|+|+|||+++.+. .||++++|++|++++.|
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQIKKN--LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999987531 2689999999999985 59999999999999876
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=345.83 Aligned_cols=183 Identities=25% Similarity=0.457 Sum_probs=161.9
Q ss_pred eEEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh--cCCCceEEEcCccCCcchhHHHH
Q 005467 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly--~p~~G~I~idG~di~~i~~~~lR 525 (695)
.|+++|++|+|+++. ++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999997521 246999999999999999999999999999999999987 489999999999875 5678
Q ss_pred hhhccccCCceeeee-eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 526 EKIGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
+.++|++|++.+|.. |++||+.++. . ++ .||||||||++||||+++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~--~---------~~----------------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA--L---------LR----------------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH--H---------Hh----------------------cCCHHHhHHHHHHHHHhc
Confidence 899999999988874 9999998761 0 00 699999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc--ccccCeEEEeeC-CeEEEec
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDD-GRIIEVG 671 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst--i~~aD~IvvL~~-G~Ive~G 671 (695)
+|++|+|||||++||.++.+.+.+.|.++.+ .++|+|+|||+++. .+.||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLAD---SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH---cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999998753 36899999999983 467999999999 9999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=357.84 Aligned_cols=210 Identities=27% Similarity=0.449 Sum_probs=182.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 4899999999974 3699999999999999999999999999999999999999999999987 3469
Q ss_pred ccccCCceeee---eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 529 GFVGQEPQLLQ---MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 529 ~~V~Qd~~LF~---~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
+|++|++.++. .|+.+|+.+. +..+++++.++++..++.++++..+ ..||||||||++||||++.+
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGq~qrv~laral~~~ 138 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR--PGTKKEDILPALKRVQAGHLIDAPM---------QKLSGGETQRVLLARALLNR 138 (251)
T ss_pred EEeccccccccccChhHHHHHhcc--ccccHHHHHHHHHHcCChHHHhCCh---------hhCCHHHHHHHHHHHHHhcC
Confidence 99999998765 4888998765 2445678888999999887765533 36999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhcCchhH
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKGRLYA 684 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~ 684 (695)
|++|||||||++||+++...+.+.|.++.+. .++|+|+|||+++.+. .||+|++|++ +|++.|+++|+.. .+.|.
T Consensus 139 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~--~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~ 214 (251)
T PRK09544 139 PQLLVLDEPTQGVDVNGQVALYDLIDQLRRE--LDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFI 214 (251)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHH
Confidence 9999999999999999999999999887431 2689999999999985 5999999965 7999999999864 55666
Q ss_pred HHH
Q 005467 685 KLV 687 (695)
Q Consensus 685 ~l~ 687 (695)
++|
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 666
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=337.83 Aligned_cols=171 Identities=62% Similarity=0.966 Sum_probs=159.8
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|+++. .++++|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|.++..++...+|+.++
T Consensus 1 l~~~~l~~~~~~~~-~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGRP-KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCCC-cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 57899999997531 36999999999999999999999999999999999999999999999999998888788899999
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEE
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~IL 609 (695)
|++|++.+|+.|+.||+ ||||||||++||||++.+|++|
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997 9999999999999999999999
Q ss_pred EEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCe
Q 005467 610 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666 (695)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~ 666 (695)
+|||||++||+.+.+.+.+.|.++. +++|+|++||++..++.||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~----~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALA----KGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhc----CCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998873 3589999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=358.17 Aligned_cols=214 Identities=25% Similarity=0.331 Sum_probs=175.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh--hcCCCceEEEcCccCCcchhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl--y~p~~G~I~idG~di~~i~~~~lR~ 526 (695)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||.++.+++....++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999974 3699999999999999999999999999999999998 7899999999999998887666554
Q ss_pred -hhccccCCceeeee-eccccccccCCcC--------CC----chhHHHHHHHhhHh-HhHhcCCCCccccccccccCCc
Q 005467 527 -KIGFVGQEPQLLQM-DIKSNIMYGCPKD--------VK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGG 591 (695)
Q Consensus 527 -~I~~V~Qd~~LF~~-TI~eNI~~g~~~~--------~~----~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~~LSGG 591 (695)
.+++++|++.+|.+ |+.+|+.++.... .+ .+++.++++..++. +.. +..+++ .||||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~-~LSgG 155 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFL-------SRNVNE-GFSGG 155 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhh-------cccccc-CCCHH
Confidence 48899999999875 7899987652110 01 11233344444432 121 222211 49999
Q ss_pred cchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc--cCeEEEeeCCeEEE
Q 005467 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIE 669 (695)
Q Consensus 592 QkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~--aD~IvvL~~G~Ive 669 (695)
||||++||||++++|++|||||||++||.++.+.+.+.|.++.+ +++|+|++||+++.+.. ||+|++|++|++++
T Consensus 156 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT---SENSIILITHYQRLLDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999988743 36899999999999875 89999999999999
Q ss_pred eccchhh
Q 005467 670 VGNHAEL 676 (695)
Q Consensus 670 ~Gth~eL 676 (695)
.|+++++
T Consensus 233 ~~~~~~~ 239 (252)
T CHL00131 233 TGDAELA 239 (252)
T ss_pred ecChhhh
Confidence 9999844
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=338.97 Aligned_cols=179 Identities=37% Similarity=0.586 Sum_probs=160.6
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcc
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (695)
+++||+|+|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 57999999974 369999999999999999999999999999999999999999999999999998888888899999
Q ss_pred ccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEE
Q 005467 531 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 610 (695)
Q Consensus 531 V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILI 610 (695)
++| +++..++.+++...+ ..||||||||++||||++++|+++|
T Consensus 78 ~~q----------------------------~l~~~gl~~~~~~~~---------~~LS~G~~qrl~laral~~~p~lll 120 (180)
T cd03214 78 VPQ----------------------------ALELLGLAHLADRPF---------NELSGGERQRVLLARALAQEPPILL 120 (180)
T ss_pred HHH----------------------------HHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 666777776654432 3699999999999999999999999
Q ss_pred EeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEec
Q 005467 611 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 611 LDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~G 671 (695)
|||||++||.++.+.+.+.|.++.+. .++|+|++||+++.+ +.||++++|++|++++.|
T Consensus 121 lDEP~~~LD~~~~~~~~~~l~~~~~~--~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 121 LDEPTSHLDIAHQIELLELLRRLARE--RGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999987431 258999999999998 569999999999998764
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=344.45 Aligned_cols=184 Identities=35% Similarity=0.580 Sum_probs=163.0
Q ss_pred eEEEEEEeeecCCC---CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh--cCCCceEEEcCccCCcchhHH
Q 005467 449 HVQFVNISFHYPSR---PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~---~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly--~p~~G~I~idG~di~~i~~~~ 523 (695)
.|+++||+|+|++. .++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999752 0246999999999999999999999999999999999999 9999999999998865 36
Q ss_pred HHhhhccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 524 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 524 lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
+|+.++|++|++.+|. .|++||+.++. . .. .||||||||++||||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~-~-~~-------------------------------~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA-K-LR-------------------------------GLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH-H-hc-------------------------------cCCHHHHHHHHHHHHH
Confidence 7889999999999887 59999998652 1 00 6999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecc-cc-cccCeEEEeeCCeEEEec
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TI-KAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrls-ti-~~aD~IvvL~~G~Ive~G 671 (695)
+++|++|+|||||++||..+.+.+.+.|+++.+ +++|+|++||+++ .+ +.||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD---TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999998743 3689999999997 45 459999999999998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=348.83 Aligned_cols=196 Identities=34% Similarity=0.508 Sum_probs=164.6
Q ss_pred EEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh----HHHHhh
Q 005467 452 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWLREK 527 (695)
Q Consensus 452 f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~----~~lR~~ 527 (695)
++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...|+.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4799999974 369999999999999999999999999999999999999999999999999765432 245778
Q ss_pred hccccCCceeee-eeccccccccCCc-CC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~-~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
++||+|++.+|. .|++||+.++... .. .++++.++++..++.++.+..+ ..||||||||++||||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lS~G~~qr~~lara 148 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKI---------YELSGGEQQRVALARA 148 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCCh---------hhCCHHHHHHHHHHHH
Confidence 999999999997 6999999875210 11 1334555666666654433322 3699999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
++++|++|||||||++||+++.+.+.+.|.++.+ +++|+|++||++..+..||+|++|
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 149 ILKDPPLILADEPTGSLDPKNRDEVLDLLLELND---EGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999988743 368999999999988889999986
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=341.63 Aligned_cols=173 Identities=30% Similarity=0.558 Sum_probs=157.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch-hHHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~-~~~lR~~ 527 (695)
-|+++|++++| +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++ ...+|+.
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 38999999998 899999999999999999999999999999999999999999999999998876 3456788
Q ss_pred hccccCCc----eeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 528 IGFVGQEP----QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 528 I~~V~Qd~----~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
++||+|++ .++..|++||+.++. . ||||||||++||||++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~-~-----------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSS-L-----------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHh-h-----------------------------------cCHHHHHHHHHHHHHc
Confidence 99999995 344579999998762 1 9999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeE
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 667 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~I 667 (695)
.+|++|+|||||++||+++.+.+.+.|.++.+ +++|+|++||+++.+.. ||+|++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELAD---AGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998743 36899999999998876 999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=355.15 Aligned_cols=219 Identities=22% Similarity=0.373 Sum_probs=178.0
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++++||++. .+|+|+||+|++||+++|+||||||||||+++|+|++++ +|+|.+||.++.+.+...+++.++
T Consensus 1 ~~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~ 72 (248)
T PRK03695 1 MQLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRA 72 (248)
T ss_pred Ccccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheE
Confidence 357788874 279999999999999999999999999999999999965 999999999998888888888999
Q ss_pred cccCCce-eeeeeccccccccCCcCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 530 FVGQEPQ-LLQMDIKSNIMYGCPKDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 530 ~V~Qd~~-LF~~TI~eNI~~g~~~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
||+|++. .+..|+++|+.++.....+. +++.++++..++.+.....+ ..||||||||++||||++.
T Consensus 73 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 73 YLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSV---------NQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred EecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCc---------ccCCHHHHHHHHHHHHHhc
Confidence 9999985 55689999999873211111 23344444444433322211 3799999999999999997
Q ss_pred -------CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhh
Q 005467 605 -------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 605 -------~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eL 676 (695)
+|++|||||||++||+++...+.+.|.++.+ +++|+|++||+++.+ +.||+|++|++|++++.|+++++
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~---~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ---QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 6799999999999999999999999988743 368999999999976 55999999999999999999998
Q ss_pred hhcCchhHHHHhh
Q 005467 677 LHKGRLYAKLVKR 689 (695)
Q Consensus 677 l~~~g~Y~~l~~~ 689 (695)
... ....+.+..
T Consensus 221 ~~~-~~~~~~~~~ 232 (248)
T PRK03695 221 LTP-ENLAQVFGV 232 (248)
T ss_pred hCc-hHHHHHhCC
Confidence 653 344555543
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=343.40 Aligned_cols=197 Identities=21% Similarity=0.376 Sum_probs=163.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999964 369999999999999999999999999999999999999999999999999875 3457788999
Q ss_pred cccCCceee-eeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcE
Q 005467 530 FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608 (695)
Q Consensus 530 ~V~Qd~~LF-~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~I 608 (695)
|++|++.++ ..|++||+.++......++++.++++..++.+. .+..+ ..||||||||++||||++++|++
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~--~~LS~G~~~rv~laral~~~p~~ 148 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL-------IDYPC--GLLSSGQKRQVALLRLWMSKAKL 148 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchh-------hhCCh--hhcCHHHHHHHHHHHHHhcCCCE
Confidence 999999987 579999999873111122234444444433222 22221 36999999999999999999999
Q ss_pred EEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
|||||||++||..+.+.+.+.|.+..+ +++|+|++||+.+.+.+||.-+++
T Consensus 149 lilDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~d~~~~~ 199 (200)
T PRK13540 149 WLLDEPLVALDELSLLTIITKIQEHRA---KGGAVLLTSHQDLPLNKADYEEYH 199 (200)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHHH---cCCEEEEEeCCchhccccchhhcc
Confidence 999999999999999999999998742 368999999999999999986643
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=332.44 Aligned_cols=164 Identities=36% Similarity=0.528 Sum_probs=150.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. +.++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 5799999999643 46999999999999999999999999999999999999999999999883 6899
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEE
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~IL 609 (695)
|++|++.++++|++|||.++ ....||||||||++||||++++|++|
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~l 113 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFV 113 (166)
T ss_pred EECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999763 11479999999999999999999999
Q ss_pred EEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCe
Q 005467 610 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666 (695)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~ 666 (695)
||||||++||.++.+.+.+.|++. ++|+|++||+++..+.||+|++|++|-
T Consensus 114 llDEPt~~LD~~~~~~l~~~l~~~------~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 114 FLDEATSALDEESEDRLYQLLKEL------GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EEECCccccCHHHHHHHHHHHHHh------CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 999999999999999999999875 379999999999888899999999863
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=341.96 Aligned_cols=186 Identities=32% Similarity=0.452 Sum_probs=162.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh--hcCCCceEEEcCccCCcchhHHH-Hh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-RE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl--y~p~~G~I~idG~di~~i~~~~l-R~ 526 (695)
++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||+++.+.+.... |+
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999974 3699999999999999999999999999999999999 68999999999999988876554 45
Q ss_pred hhccccCCceeeeee-ccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 527 KIGFVGQEPQLLQMD-IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~T-I~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
.++||+|++.+|.++ +++|+ ...+ ..||||||||++||||++++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l--------------------------~~~~---------~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL--------------------------RYVN---------EGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH--------------------------hhcc---------ccCCHHHHHHHHHHHHHhcC
Confidence 699999999988653 33332 0111 36999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc--ccCeEEEeeCCeEEEeccchhhh
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK--AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~--~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|++|||||||++||+++.+.+.+.|.++.+ +++|+|++||+++.+. .||+|++|++|++++.| ++|+.
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~---~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLRE---EGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 999999999999999999999999998743 3689999999999988 69999999999999999 55554
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=319.34 Aligned_cols=193 Identities=29% Similarity=0.490 Sum_probs=166.0
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
.++|+|+||++.+||.+||.||||||||||+|.++-+.+|++|++++.|.|+++++++.+|++|+||.|.|-||-+||.|
T Consensus 16 a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeD 95 (223)
T COG4619 16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVED 95 (223)
T ss_pred CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC---CcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCcEEEEeccccccC
Q 005467 545 NIMYGC---PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619 (695)
Q Consensus 545 NI~~g~---~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD 619 (695)
|+-|-- +...+.+.-.+-++.+++.+.+ +.. .+|||||||||||+|-|---|+||+|||+|||||
T Consensus 96 NlifP~~~r~rr~dr~aa~~llar~~l~~~~----------L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD 165 (223)
T COG4619 96 NLIFPWQIRNRRPDRAAALDLLARFALPDSI----------LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALD 165 (223)
T ss_pred ccccchHHhccCCChHHHHHHHHHcCCchhh----------hcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcC
Confidence 998741 1112222223333333333332 222 2899999999999999999999999999999999
Q ss_pred cccchhhhhHHHhhhccccCcceEEEEeeeccc-ccccCeEEEeeCCeEEE
Q 005467 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIE 669 (695)
Q Consensus 620 ~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst-i~~aD~IvvL~~G~Ive 669 (695)
..+.+.|.+.|.+.... ++..+++|||+... +++|||++-+..|++-|
T Consensus 166 ~~nkr~ie~mi~~~v~~--q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 166 ESNKRNIEEMIHRYVRE--QNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred hhhHHHHHHHHHHHhhh--hceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 99999999999988642 56899999999987 89999999999998744
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=375.20 Aligned_cols=228 Identities=33% Similarity=0.503 Sum_probs=186.7
Q ss_pred eEEEEEEeeecCCCC--------ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc--CCc
Q 005467 449 HVQFVNISFHYPSRP--------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP--LTD 518 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~--------~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d--i~~ 518 (695)
-++++|++.+|..++ ...+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.| +..
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 478999999998421 2468999999999999999999999999999999999999999999999987 232
Q ss_pred chhHHHHhhhccccCCce--ee-eeeccccccccCC--cCC----CchhHHHHHHHhhHhH-hHhcCCCCcccccccccc
Q 005467 519 LDIRWLREKIGFVGQEPQ--LL-QMDIKSNIMYGCP--KDV----KNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLL 588 (695)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~--LF-~~TI~eNI~~g~~--~~~----~~eei~~A~~~a~l~~-fI~~LP~G~dT~vge~~L 588 (695)
-+...+|+++-+|+|||+ |- ..||.++|.-... ... .++++.+.++.+++.+ +...-| ..|
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP---------~el 430 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP---------HEL 430 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc---------hhc
Confidence 234567889999999997 33 3689988863210 011 1123555566666553 333333 269
Q ss_pred CCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeE
Q 005467 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 667 (695)
Q Consensus 589 SGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~I 667 (695)
|||||||+||||||..+|++||+|||||+||+-+.+.|.+.|.++.+. -|-|.|+|||+++.++. ||||+||++|+|
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e--~g~t~lfISHDl~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE--LGLTYLFISHDLAVVRYIADRVAVMYDGRI 508 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHH--hCCEEEEEeCCHHHHHhhCceEEEEECCeE
Confidence 999999999999999999999999999999999999999999998753 47899999999999987 999999999999
Q ss_pred EEeccchhhhhc-CchhHHHH
Q 005467 668 IEVGNHAELLHK-GRLYAKLV 687 (695)
Q Consensus 668 ve~Gth~eLl~~-~g~Y~~l~ 687 (695)
||.|+.+++.+. ...|.+..
T Consensus 509 VE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 509 VEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred EEeCCHHHHhcCCCChHHHHH
Confidence 999999999887 67776543
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=351.19 Aligned_cols=194 Identities=31% Similarity=0.457 Sum_probs=161.3
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeee-eeccccc
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNI 546 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-~TI~eNI 546 (695)
|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999997 6999999
Q ss_pred cccCC---cCCCch----hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccC
Q 005467 547 MYGCP---KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619 (695)
Q Consensus 547 ~~g~~---~~~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD 619 (695)
.++.. +..+++ ++.++++..++.++.+..| ..||||||||++||||++.+|++|||||||++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 146 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP---------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALD 146 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh---------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCC
Confidence 87521 122222 2344455555444333222 3699999999999999999999999999999999
Q ss_pred cccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 620 ~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
+.+.+.+.+.|.++.+ ..++|+|+|||+++.+. .||+|++|++|++++.|+..+++
T Consensus 147 ~~~~~~l~~~l~~~~~--~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 147 ALTRGNLQEELMQIWE--EHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred HHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 9999999999988743 13689999999999875 49999999999999999876664
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=345.90 Aligned_cols=212 Identities=37% Similarity=0.560 Sum_probs=186.9
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH----hhhccccCCceee-eee
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR----EKIGFVGQEPQLL-QMD 541 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR----~~I~~V~Qd~~LF-~~T 541 (695)
-++|+||+|+.||+..|.|-||||||||++++.|+++|+.|+|++||.|+..++.++|| +++++|+|..-|| +.|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 46899999999999999999999999999999999999999999999999999988774 5899999999999 489
Q ss_pred ccccccccCC-cCC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEecccc
Q 005467 542 IKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS 616 (695)
Q Consensus 542 I~eNI~~g~~-~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTS 616 (695)
|.||..||-. ... .+++..++++.+|+++|-.+.|+ .||||++||+.|||||..||+||++|||.|
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~---------eLSGGMqQRVGLARAla~~~~IlLMDEaFS 193 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN---------ELSGGMQQRVGLARALANDPDILLMDEAFS 193 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc---------cccchHHHHHHHHHHHccCCCEEEecCchh
Confidence 9999999941 112 23456778999999999888885 599999999999999999999999999999
Q ss_pred ccCcccchhhhhHHHhhhccccCcceEEEEeeeccc-ccccCeEEEeeCCeEEEeccchhhhhc--CchhHHHHhh
Q 005467 617 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIEVGNHAELLHK--GRLYAKLVKR 689 (695)
Q Consensus 617 aLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst-i~~aD~IvvL~~G~Ive~Gth~eLl~~--~g~Y~~l~~~ 689 (695)
||||--..+.|+-|.++.+. -+||+++|||+|.. ++-.|||..|++|+|+..||++|++.+ +.+-+++++.
T Consensus 194 ALDPLIR~~mQdeLl~Lq~~--l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~ 267 (386)
T COG4175 194 ALDPLIRTEMQDELLELQAK--LKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRN 267 (386)
T ss_pred hcChHHHHHHHHHHHHHHHH--hCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHHHHHHHhc
Confidence 99999999999999888653 46899999999977 577999999999999999999999986 3333455543
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=341.54 Aligned_cols=196 Identities=22% Similarity=0.351 Sum_probs=169.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ..+|+.++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 578999999974 36999999999999999999999999999999999999999999999999886543 56788999
Q ss_pred cccCCceee-eeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcE
Q 005467 530 FVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608 (695)
Q Consensus 530 ~V~Qd~~LF-~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~I 608 (695)
|++|++.++ +.|++||+.+.. +..+++++.++++..++.++....+ ..||||||||++||||++++|++
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWH-ADHSDEQVEEALARVGLNGFEDRPV---------AQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred EeccccccCCCcCHHHHHHhhc-ccccHHHHHHHHHHcCChhhhcCch---------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999876 589999998873 3345667788888888865543322 36999999999999999999999
Q ss_pred EEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEe
Q 005467 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVI 662 (695)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL 662 (695)
|||||||++||+++.+.+.+.|.+..+ +++|+|+|||+...+ ..+|+.+++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCA---RGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999987643 368999999987765 568898877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=387.20 Aligned_cols=215 Identities=29% Similarity=0.426 Sum_probs=181.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH-hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-EK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR-~~ 527 (695)
-|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999877666554 46
Q ss_pred hccccCCceeee-eeccccccccCCcC-CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPKD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~~-~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
+|||+|++.+|. .|++||+.++.... ..++++.++++..++.++... .+ ..||||||||++|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~--~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDS-------SA--GSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccC-------Ch--hhCCHHHHHHHHHHHHHHcC
Confidence 999999999887 49999999873211 112344455555554332221 11 37999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|++|||||||++||+.+...+.+.|+++.+ +|+|+|+|||++..+. .||+|++|++|+|++.|+++++..
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLA---QGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999998743 3689999999999885 499999999999999999998764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=394.18 Aligned_cols=229 Identities=30% Similarity=0.472 Sum_probs=186.1
Q ss_pred eEEEEEEeeecCCCC--------ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch
Q 005467 449 HVQFVNISFHYPSRP--------TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~--------~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~ 520 (695)
-++++||+++|+.+. ..++|+||||+|++||++|||||||||||||+++|+|+.+|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996311 136999999999999999999999999999999999999999999999999987765
Q ss_pred hH---HHHhhhccccCCce--eee-eeccccccccCC-cCC-C----chhHHHHHHHhhHh-HhHhcCCCCccccccccc
Q 005467 521 IR---WLREKIGFVGQEPQ--LLQ-MDIKSNIMYGCP-KDV-K----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDL 587 (695)
Q Consensus 521 ~~---~lR~~I~~V~Qd~~--LF~-~TI~eNI~~g~~-~~~-~----~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~~ 587 (695)
.. .+|++|+||+|++. ++. .|+.||+.++.. ... + .+++.++++..++. +.....| ..
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~---------~~ 463 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP---------HE 463 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc---------cc
Confidence 43 45778999999983 664 599999976410 011 1 13444555555553 3333333 36
Q ss_pred cCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCe
Q 005467 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 666 (695)
Q Consensus 588 LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~ 666 (695)
||||||||++|||||+.+|++||||||||+||..+.+.|.+.|.++.+. .|.|+|+|||+++.+.. ||+|++|++|+
T Consensus 464 LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~--~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD--FGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999987532 36899999999999865 99999999999
Q ss_pred EEEeccchhhhhc-CchhHH-HHh
Q 005467 667 IIEVGNHAELLHK-GRLYAK-LVK 688 (695)
Q Consensus 667 Ive~Gth~eLl~~-~g~Y~~-l~~ 688 (695)
|++.|+.+++..+ ...|.+ ++.
T Consensus 542 iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 542 IVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred EEEecCHHHHhcCCCCHHHHHHHh
Confidence 9999999999864 344543 443
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=388.03 Aligned_cols=217 Identities=28% Similarity=0.439 Sum_probs=177.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC--CCceEEEcCccCCcchhHH-HH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRW-LR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p--~~G~I~idG~di~~i~~~~-lR 525 (695)
-|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++...+... +|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999964 3699999999999999999999999999999999999996 8999999999998766543 46
Q ss_pred hhhccccCCceeee-eeccccccccCCcC----CCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAI 598 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~----~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaI 598 (695)
+.+|||+|++.+|. .|++|||.++.... .+.++..+ .+.++++.+ |++..... ..||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 78999999998886 59999999873111 12122111 122233332 22211111 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||+.+|++||||||||+||+++...+.+.|.++.+ +|+|+|+|||+++.+.. ||+|++|++|+|++.|+.+++.
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA---HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 9999999999999999999999999999999998743 36899999999999865 9999999999999999988875
Q ss_pred h
Q 005467 678 H 678 (695)
Q Consensus 678 ~ 678 (695)
.
T Consensus 232 ~ 232 (506)
T PRK13549 232 E 232 (506)
T ss_pred H
Confidence 3
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=326.35 Aligned_cols=216 Identities=29% Similarity=0.500 Sum_probs=184.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
+++.+++.+|++ -.++++||||+++.||+++|.||+||||||+++.|..|..|++|+|++||.|... ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 688999999975 2468999999999999999999999999999999999999999999999999987 5678899999
Q ss_pred cccCCceeee-eeccccccccCC-cCCCchh----HHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~-~~~~~ee----i~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
+++-+.-|+. .|.+|||.|... .+.++.+ +.+..+.-++.+.++ +.+| ++|-|+|||++|||||.
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-------rRv~--~~S~G~kqkV~iARAlv 149 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-------RRVG--EFSTGMKQKVAIARALV 149 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-------HHHh--hhchhhHHHHHHHHHHh
Confidence 9998888886 599999987521 2333333 333333333333332 2222 69999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
+||+++|||||||+||-.+...+.+-+.+.++ .||+||+-||-++.++ -||+++++.+|+++..|+.+++.++.
T Consensus 150 h~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~---egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 150 HDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN---EGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred cCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc---CCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 99999999999999999999999999998853 4799999999999998 59999999999999999999998764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=387.73 Aligned_cols=215 Identities=25% Similarity=0.409 Sum_probs=177.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH-HHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~-lR~~ 527 (695)
-|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 3899999999964 36999999999999999999999999999999999999999999999999998776554 3457
Q ss_pred hccccCCceeee-eeccccccccCCc-----C---CCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPK-----D---VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~-----~---~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
|+||+|++.+|. .|++||+.++... . .+. +++.++++..++.+ -.+..+ ..|||||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-------~~~~~~--~~LSgG~~q 152 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-------DLDEKV--ANLSISHKQ 152 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-------Ccccch--hhCCHHHHH
Confidence 999999998886 4999999876311 0 011 12222333333221 122221 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth 673 (695)
|++|||||+.+|++||||||||+||+.+...+.+.|.++.+ +|+|+|+|||+++.+.. ||+|++|++|++++.|+.
T Consensus 153 rv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK---EGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecch
Confidence 99999999999999999999999999999999999998753 36899999999999864 999999999999999998
Q ss_pred hhhhh
Q 005467 674 AELLH 678 (695)
Q Consensus 674 ~eLl~ 678 (695)
+++..
T Consensus 230 ~~~~~ 234 (510)
T PRK09700 230 SDVSN 234 (510)
T ss_pred hhCCH
Confidence 88753
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=387.05 Aligned_cols=217 Identities=27% Similarity=0.395 Sum_probs=176.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH-HHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~-lR~~ 527 (695)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... .|+.
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999964 36999999999999999999999999999999999999999999999999987655443 4568
Q ss_pred hccccCCceeee-eeccccccccCCc-----CCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPK-----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIA 599 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~-----~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIA 599 (695)
++||+|++.+|. .|++||+.++... ..+.++..+ .+.+.++.+ |+...... ..||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 999999998886 5999999987311 011111111 122233332 22211111 37999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+.+|++|||||||++||+++.+.+.+.|.++.+ .++|+|+|||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS---QGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 999999999999999999999999999999998743 3689999999999886 599999999999999999888753
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=326.95 Aligned_cols=160 Identities=36% Similarity=0.558 Sum_probs=147.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh-HHHHhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~-~~lR~~I 528 (695)
|+++||+++|++ .++|+|+||+|+|||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. +..|+.+
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 579999999974 369999999999999999999999999999999999999999999999999988765 4467789
Q ss_pred ccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcE
Q 005467 529 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608 (695)
Q Consensus 529 ~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~I 608 (695)
+|++| ||||||||++||||++++|++
T Consensus 78 ~~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 78 AMVYQ------------------------------------------------------LSVGERQMVEIARALARNARL 103 (163)
T ss_pred EEEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99988 999999999999999999999
Q ss_pred EEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEE
Q 005467 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIE 669 (695)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive 669 (695)
|+|||||++||.++.+.+.+.|+++.+ +++|+|++||++..+. .||++++|++|++++
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRRLRA---QGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999998743 3689999999999875 499999999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=381.51 Aligned_cols=212 Identities=23% Similarity=0.274 Sum_probs=183.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 899999999974 35999999999999999999999999999999999999999999999998887777677788899
Q ss_pred cccCCcee---------eeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 530 FVGQEPQL---------LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 530 ~V~Qd~~L---------F~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
+|+|++.+ +..|+++|+.++ . ..++++.++++..++.+.....| ..||||||||++|||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgG~~qrv~la~ 148 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDE-V--KDPARCEQLAQQFGITALLDRRF---------KYLSTGETRKTLLCQ 148 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccc-h--hHHHHHHHHHHHcCCHhhhhCCc---------ccCCHHHHHHHHHHH
Confidence 99998753 246889988765 1 12456777777777765544433 369999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|++.+|++|+||||||+||+++.+.+.+.|.++.+ +|+|+|+|||++..+.. ||+|++|++|++++.|+.+++...
T Consensus 149 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 149 ALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ---SGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 99999999999999999999999999999998753 36899999999999865 999999999999999999887653
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=347.48 Aligned_cols=207 Identities=30% Similarity=0.437 Sum_probs=166.4
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC----CCceEEEcCccCCcchhHHHHhhhccccCCce-eee--
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP----SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ-LLQ-- 539 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p----~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~-LF~-- 539 (695)
+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++... +..++.++||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999988654 223468999999985 454
Q ss_pred eeccccccccCC-cCC----CchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCcEEEEe
Q 005467 540 MDIKSNIMYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLD 612 (695)
Q Consensus 540 ~TI~eNI~~g~~-~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ILILD 612 (695)
.|+.+|+.+... ... .++++.++++..++.+ + ++.... ..||||||||++||||++++|++||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 588888865311 011 1233555555555431 1 112222 379999999999999999999999999
Q ss_pred ccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc-CchhHH
Q 005467 613 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK-GRLYAK 685 (695)
Q Consensus 613 EaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~-~g~Y~~ 685 (695)
|||++||.++.+.+.+.|.++.+ ..++|+|++||+++.+. .||+|++|++|++++.|+++++... .+.|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~--~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQ--LFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999999998753 13689999999999986 5999999999999999999999865 344443
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=339.51 Aligned_cols=197 Identities=21% Similarity=0.319 Sum_probs=168.8
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ..++++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 689999999964 36999999999999999999999999999999999999999999999999987654 45678899
Q ss_pred cccCCceeee-eeccccccccCCc-C-CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPK-D-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~-~-~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
|++|++.++. .|++||+.++.+. . .+++++.++++..++.++.+..+ ..||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrl~la~al~~~p 148 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPV---------RQLSAGQQRRVALARLWLTRA 148 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCCh---------hhcCHHHHHHHHHHHHHhcCC
Confidence 9999998886 6999999876311 1 34456777888888776554322 369999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEe
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVI 662 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL 662 (695)
++|||||||++||+++.+.+.+.|.+..+ +++|+|++||+++.+.. .+|++++
T Consensus 149 ~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 149 PLWILDEPFTAIDKQGVARLEALLAQHAE---QGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHH---CCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998743 36899999999999965 5577666
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=338.41 Aligned_cols=194 Identities=33% Similarity=0.527 Sum_probs=170.3
Q ss_pred eEEEEEEeeecCCCCc------cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH
Q 005467 449 HVQFVNISFHYPSRPT------VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~------~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~ 522 (695)
-++++|++..|+.... ..+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 3789999999975321 36899999999999999999999999999999999999999999999999987776
Q ss_pred HHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhH-hHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 523 WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~-fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
. +...+++.+.++.+|+.+ +....|. .|||||||||+||||
T Consensus 82 --------------------------~---~~~~~~v~elL~~Vgl~~~~~~ryPh---------elSGGQrQRi~IARA 123 (268)
T COG4608 82 --------------------------K---EERRERVLELLEKVGLPEEFLYRYPH---------ELSGGQRQRIGIARA 123 (268)
T ss_pred --------------------------h---hHHHHHHHHHHHHhCCCHHHhhcCCc---------ccCchhhhhHHHHHH
Confidence 1 223567889999999866 5556553 599999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc-
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK- 679 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~- 679 (695)
|.-||+++|+|||||+||.-.++.|.+.|.++.+. .|-|.++|||+++.+++ ||||.||..|+|+|.|+-+|+.++
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~--~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p 201 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE--LGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH--hCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCC
Confidence 99999999999999999999999999999988653 57899999999999987 999999999999999999999985
Q ss_pred CchhH
Q 005467 680 GRLYA 684 (695)
Q Consensus 680 ~g~Y~ 684 (695)
.-.|.
T Consensus 202 ~HpYT 206 (268)
T COG4608 202 LHPYT 206 (268)
T ss_pred CCHHH
Confidence 34443
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=337.86 Aligned_cols=196 Identities=24% Similarity=0.364 Sum_probs=167.9
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++... . +|+.++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~--~-~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDP--D-VAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcch--h-hHhhcE
Confidence 789999999974 3599999999999999999999999999999999999999999999999987532 2 788999
Q ss_pred cccCCceee-eeeccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc
Q 005467 530 FVGQEPQLL-QMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 530 ~V~Qd~~LF-~~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ 607 (695)
|++|++.++ +.|++||+.+... ....++++.++++..++.++.+ .|. ..||||||||++||||++++|+
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~--------~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-LPF--------GYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-CCh--------hhcCHHHHHHHHHHHHHhcCCC
Confidence 999988765 6899999987521 1233456777888888766432 222 3699999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
+|||||||++||+++.+.+.+.|.+..+ +++|+|++||++..+.. |+++.++.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLA---QGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999988643 36899999999999988 99988865
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=388.04 Aligned_cols=202 Identities=27% Similarity=0.448 Sum_probs=171.3
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC--CceEEEcCccCCcchhHHHHhhhccccCCceeee-ee
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS--DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MD 541 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~--~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-~T 541 (695)
+++|+|+|++++|||++||+||||||||||+++|+|+.+|. +|+|.+||+++.. ..++++|||+|++.+|. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999985 8999999998742 45677999999999995 69
Q ss_pred ccccccccCC----cCCCchhHHHHHHHhhHhHhHh--cCCCCcccccccc---ccCCccchhHHHHHHhhcCCcEEEEe
Q 005467 542 IKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFIL--SLPCGYETLVDDD---LLSGGQKQRIAIARAILRDPAILLLD 612 (695)
Q Consensus 542 I~eNI~~g~~----~~~~~eei~~A~~~a~l~~fI~--~LP~G~dT~vge~---~LSGGQkQRIaIARAll~~p~ILILD 612 (695)
++|||.++.. .+.++++..+. +++.++ .|++..||.+|+. .||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 9999988631 12333332221 233444 3555679999873 89999999999999999999999999
Q ss_pred ccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc-c-cccCeEEEeeCCeEEEeccchhhhh
Q 005467 613 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-I-KAVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 613 EaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst-i-~~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
||||+||+.++..+.+.|+++.+ +|+|+|+++|+++. + +.||+|++|++|++++.|+++|+.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~---~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQ---KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHh---CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999999999998753 47999999999984 4 6699999999999999999999974
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=346.67 Aligned_cols=195 Identities=30% Similarity=0.449 Sum_probs=158.7
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcccc-CCceee-eeec
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG-QEPQLL-QMDI 542 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~-Qd~~LF-~~TI 542 (695)
+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+. ...+|+.++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 3699999999999999999999999999999999999999999999999987553 346778999997 666676 5799
Q ss_pred cccccccCC-cCCCchhHH----HHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccc
Q 005467 543 KSNIMYGCP-KDVKNEDIE----WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 617 (695)
Q Consensus 543 ~eNI~~g~~-~~~~~eei~----~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSa 617 (695)
+||+.+... ...+.++.. ++++..+ +++..++.+ ..||||||||++||||++.+|++|||||||++
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g-------l~~~~~~~~--~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 183 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLD-------LEELLDTPV--RQLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-------ChhHhcCCh--hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 999977521 122333332 2222222 233333333 36999999999999999999999999999999
Q ss_pred cCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 618 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 618 LD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
||+++.+.+.+.|.++.+ ..++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 184 LD~~~~~~l~~~l~~~~~--~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 184 LDVVAQENIRNFLKEYNR--ERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCHHHHHHHHHHHHHHHh--cCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999998753 236899999999998755 9999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=383.03 Aligned_cols=210 Identities=28% Similarity=0.422 Sum_probs=172.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch-hHHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~-~~~lR~~ 527 (695)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ .+.+|+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 36999999999999999999999999999999999999999999999999986554 3456788
Q ss_pred hccccCCceeeee-eccccccccCCcC----CCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 528 IGFVGQEPQLLQM-DIKSNIMYGCPKD----VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 528 I~~V~Qd~~LF~~-TI~eNI~~g~~~~----~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
||||+|++.+|.. |+.||+.++.... .+. +++.++++..++.+ -.+..+ ..||||||||++|
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~--~~LSgGq~qrv~l 151 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-------DPDTPL--KYLSIGQRQMVEI 151 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-------CcCCch--hhCCHHHHHHHHH
Confidence 9999999998874 9999999863111 111 12233333333211 112111 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccc
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth 673 (695)
|||++.+|++|||||||++||+++.+.+.+.|.++.+ .|+|+|+|||+++.+.. ||+|++|++|+|++.++.
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 152 AKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA---EGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999998743 36899999999999865 999999999999987653
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=338.54 Aligned_cols=198 Identities=25% Similarity=0.316 Sum_probs=164.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+. ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 4899999999974 3599999999999999999999999999999999999999999999999988753 345679
Q ss_pred ccccCCceeeee-eccccccccCCc-CCC-chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCPK-DVK-NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~~-~~~-~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
+|++|++.+|.+ |++||+.++... +.. ++.+.++++..++. +.+++.+ ..||||||||++||||++++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~--~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-------GYEDTLV--RQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-------hhccCCh--hhCCHHHHHHHHHHHHHhcC
Confidence 999999999886 999999875211 111 22333444444332 2233322 37999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeC
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDD 664 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~ 664 (695)
|++|+|||||++||.++.+.+.+.|.+..+ +++|+|++||+++.+. .||+|++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVNRMISAHLR---GGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999988743 3689999999999986 5999999874
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=334.79 Aligned_cols=195 Identities=24% Similarity=0.324 Sum_probs=164.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 578999999974 36999999999999999999999999999999999999999999999999987765 45678999
Q ss_pred cccCCceeee-eeccccccccCCc-CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~-~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ 607 (695)
|++|++.+|. .|++||+.+.... ...++++.++++..+++++.+..| ..||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~la~al~~~p~ 147 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPA---------AQLSAGQQRRLALARLWLSRAP 147 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCCh---------hhcCHHHHHHHHHHHHHhcCCC
Confidence 9999999886 7999999876211 111335777888888876654322 3699999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEE
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 661 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~Ivv 661 (695)
+|||||||++||..+.+.+.+.|.+..+ +++|+|++||+...+. ||+.+.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~---~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 148 LWILDEPTTALDKAGVALLAGLLRAHLA---RGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEEccccccc-ceEEee
Confidence 9999999999999999999999998743 3689999999996543 355543
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=344.70 Aligned_cols=227 Identities=30% Similarity=0.473 Sum_probs=182.7
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-C----CCceEEEcCccCCcchhHH
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-P----SDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-p----~~G~I~idG~di~~i~~~~ 523 (695)
++++|++.+|.... ...+++||||+|++||++||||+|||||||+.+.++|+.+ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997532 2469999999999999999999999999999999999998 4 6799999999999999876
Q ss_pred HH----hhhccccCCce-eee--eeccccc----cccCCcCC-C----chhHHHHHHHhhHhH---hHhcCCCCcccccc
Q 005467 524 LR----EKIGFVGQEPQ-LLQ--MDIKSNI----MYGCPKDV-K----NEDIEWAAKQAYVHE---FILSLPCGYETLVD 584 (695)
Q Consensus 524 lR----~~I~~V~Qd~~-LF~--~TI~eNI----~~g~~~~~-~----~eei~~A~~~a~l~~---fI~~LP~G~dT~vg 584 (695)
+| +.||+|+|||. =|| .||.+-| ... ... + .++..+.++.+++.+ .+.+-|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h--~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP-------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH--GKGLSKKEAKERAIELLELVGIPDPERRLKSYP-------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHh--hcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC--------
Confidence 43 48999999984 222 2333333 221 011 1 235566666666653 233334
Q ss_pred ccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEee
Q 005467 585 DDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 663 (695)
Q Consensus 585 e~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~ 663 (695)
..||||||||+.||=|+..+|++||-||||+|||..+.+.|.+.|+++.+ ..|.|+|+|||++..+.. ||||+||.
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~--e~~~aiilITHDl~vva~~aDri~VMY 228 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR--EKGTALILITHDLGVVAEIADRVAVMY 228 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhcceEEEEE
Confidence 26999999999999999999999999999999999999999999999876 357999999999999865 99999999
Q ss_pred CCeEEEeccchhhhhc--CchhHHHHhh
Q 005467 664 DGRIIEVGNHAELLHK--GRLYAKLVKR 689 (695)
Q Consensus 664 ~G~Ive~Gth~eLl~~--~g~Y~~l~~~ 689 (695)
.|+|||.|+.+|+..+ ..+.+.|++.
T Consensus 229 aG~iVE~g~~~~i~~~P~HPYT~~Ll~s 256 (316)
T COG0444 229 AGRIVEEGPVEEIFKNPKHPYTRGLLNS 256 (316)
T ss_pred CcEEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 9999999999999986 4444555543
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=390.03 Aligned_cols=220 Identities=26% Similarity=0.436 Sum_probs=176.5
Q ss_pred eEEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC----------
Q 005467 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT---------- 517 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~---------- 517 (695)
-|+++|++++|++.. ..++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 589999999996421 246999999999999999999999999999999999999999999999997542
Q ss_pred cchhH---HHH-hhhccccCCc--eeee-eeccccccccCCc--CCCc----hhHHHHHHHhhHhH---hHhcCCCCccc
Q 005467 518 DLDIR---WLR-EKIGFVGQEP--QLLQ-MDIKSNIMYGCPK--DVKN----EDIEWAAKQAYVHE---FILSLPCGYET 581 (695)
Q Consensus 518 ~i~~~---~lR-~~I~~V~Qd~--~LF~-~TI~eNI~~g~~~--~~~~----eei~~A~~~a~l~~---fI~~LP~G~dT 581 (695)
+.+.. .+| +.||||+|++ .++. .||.|||.++... ..+. +++.++++..++.+ .....|
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~----- 166 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP----- 166 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCC-----
Confidence 22222 333 4799999998 5775 5999999875210 1222 23444455544421 111111
Q ss_pred cccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEE
Q 005467 582 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIV 660 (695)
Q Consensus 582 ~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~Iv 660 (695)
..||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ..|+|+|+|||++..+. .||+|+
T Consensus 167 ----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~--~~g~tvi~itHdl~~~~~~adri~ 240 (623)
T PRK10261 167 ----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQK--EMSMGVIFITHDMGVVAEIADRVL 240 (623)
T ss_pred ----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHH--hcCCEEEEEcCCHHHHHHhCCEEE
Confidence 36999999999999999999999999999999999999999999998753 13689999999999985 499999
Q ss_pred EeeCCeEEEeccchhhhhc
Q 005467 661 VIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 661 vL~~G~Ive~Gth~eLl~~ 679 (695)
+|++|+|++.|+++++...
T Consensus 241 vl~~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 241 VMYQGEAVETGSVEQIFHA 259 (623)
T ss_pred EeeCCeecccCCHHHhhcC
Confidence 9999999999999998753
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=380.37 Aligned_cols=213 Identities=26% Similarity=0.373 Sum_probs=174.6
Q ss_pred EEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh-HHHHhhhcc
Q 005467 452 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKIGF 530 (695)
Q Consensus 452 f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~-~~lR~~I~~ 530 (695)
++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+. +.+|+.++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4789999964 369999999999999999999999999999999999999999999999999876543 456778999
Q ss_pred ccCCceeee-eeccccccccCCc--C--CCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhh
Q 005467 531 VGQEPQLLQ-MDIKSNIMYGCPK--D--VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 531 V~Qd~~LF~-~TI~eNI~~g~~~--~--~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll 603 (695)
|+|++.+|. .|++||+.++... . .+.++..+ .+.+.++.+ |++..... ..||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998775 6999999986311 1 12222111 223333333 33322222 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
++|++|||||||++||+++.+.+.+.|.++.+ .|+|+|+|||+++.+. .||+|++|++|+|++.|+.+++.
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE---RGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 99999999999999999999999999988743 3689999999999886 59999999999999999988874
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=383.19 Aligned_cols=219 Identities=30% Similarity=0.511 Sum_probs=178.5
Q ss_pred eEEEEEEeeecCCC--------CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch
Q 005467 449 HVQFVNISFHYPSR--------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~--------~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~ 520 (695)
-|+++||+++|++. .++++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.+||.++.+++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 48999999999631 1246999999999999999999999999999999999999 58999999999987765
Q ss_pred hH---HHHhhhccccCCc--eeee-eeccccccccCCc---CCC----chhHHHHHHHhhHh-HhHhcCCCCcccccccc
Q 005467 521 IR---WLREKIGFVGQEP--QLLQ-MDIKSNIMYGCPK---DVK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDD 586 (695)
Q Consensus 521 ~~---~lR~~I~~V~Qd~--~LF~-~TI~eNI~~g~~~---~~~----~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~ 586 (695)
.. .+|+.||||+|++ .+|. .|++||+.++... ..+ ++++.++++..++. +.....| .
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~ 424 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYP---------A 424 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCC---------c
Confidence 43 3577899999997 3665 5999999875210 011 12334444444442 2222222 3
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCC
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 665 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G 665 (695)
.||||||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+. .|+|+|+|||++..+.. ||+|++|++|
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK--HQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh--hCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 79999999999999999999999999999999999999999999987532 36899999999998864 9999999999
Q ss_pred eEEEeccchhhhhc
Q 005467 666 RIIEVGNHAELLHK 679 (695)
Q Consensus 666 ~Ive~Gth~eLl~~ 679 (695)
+|++.|+.++++..
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999999764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=381.28 Aligned_cols=220 Identities=30% Similarity=0.470 Sum_probs=178.6
Q ss_pred eEEEEEEeeecCCC-CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCcchhH
Q 005467 449 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~i~~~ 522 (695)
-|+++||+++|++. ...++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124699999999999999999999999999999999999987 799999999999876643
Q ss_pred H---HH-hhhccccCCce--eee-eeccccccccCC--cCCC----chhHHHHHHHhhHhHh---HhcCCCCcccccccc
Q 005467 523 W---LR-EKIGFVGQEPQ--LLQ-MDIKSNIMYGCP--KDVK----NEDIEWAAKQAYVHEF---ILSLPCGYETLVDDD 586 (695)
Q Consensus 523 ~---lR-~~I~~V~Qd~~--LF~-~TI~eNI~~g~~--~~~~----~eei~~A~~~a~l~~f---I~~LP~G~dT~vge~ 586 (695)
. +| +.||||+|++. ++. .|+++|+.++.. ...+ ++++.++++..++.+. ....| .
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~---------~ 155 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP---------H 155 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC---------c
Confidence 3 34 57999999985 443 589999864210 0111 2345556666655431 12222 3
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCC
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDG 665 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G 665 (695)
.||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++.+. .|+|+|+|||++..+. .||+|++|++|
T Consensus 156 ~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~dri~~l~~G 233 (529)
T PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE--LNMGLLFITHNLSIVRKLADRVAVMQNG 233 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh--cCCeEEEEcCcHHHHHHhcCEEEEEECC
Confidence 69999999999999999999999999999999999999999999987531 3689999999999886 49999999999
Q ss_pred eEEEeccchhhhhc
Q 005467 666 RIIEVGNHAELLHK 679 (695)
Q Consensus 666 ~Ive~Gth~eLl~~ 679 (695)
++++.|+.+++...
T Consensus 234 ~i~~~g~~~~~~~~ 247 (529)
T PRK15134 234 RCVEQNRAATLFSA 247 (529)
T ss_pred EEEEeCCHHHHhhC
Confidence 99999999998753
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=367.31 Aligned_cols=225 Identities=30% Similarity=0.461 Sum_probs=184.4
Q ss_pred eEEEEEEeeecCCCCc-cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC----CceEEEcCccCCcchhHH
Q 005467 449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS----DGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~----~G~I~idG~di~~i~~~~ 523 (695)
-++++|++..|..... .++++||||+|.+||++||||+|||||||+++.|+|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4799999999975422 25999999999999999999999999999999999999988 899999999999998876
Q ss_pred HH----hhhccccCCce-eeee--ecccccc----ccCC--cCCCchhHHHHHHHhhHhHhHhc--CCCCcccccccccc
Q 005467 524 LR----EKIGFVGQEPQ-LLQM--DIKSNIM----YGCP--KDVKNEDIEWAAKQAYVHEFILS--LPCGYETLVDDDLL 588 (695)
Q Consensus 524 lR----~~I~~V~Qd~~-LF~~--TI~eNI~----~g~~--~~~~~eei~~A~~~a~l~~fI~~--LP~G~dT~vge~~L 588 (695)
+| +.|++|+|||. .+|- ||.+-|+ .... .+...++..+.++.+++.+-... .| ..|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP---------heL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP---------HQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC---------ccc
Confidence 64 47999999986 6653 5655553 1100 01123445555566655443332 22 379
Q ss_pred CCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeE
Q 005467 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 667 (695)
Q Consensus 589 SGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~I 667 (695)
|||||||+.||+||.+||++||+||||.+||..+.++|.+.|+++.+ ..|.++|+|||++..+.. ||||+||++|++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~--e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i 233 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQR--ELGMAVLFITHDLGVVAELADRVVVMYKGEI 233 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHH--HcCcEEEEEcCCHHHHHHhcCeEEEEECCEE
Confidence 99999999999999999999999999999999999999999999875 367999999999999965 999999999999
Q ss_pred EEeccchhhhhc-CchhH
Q 005467 668 IEVGNHAELLHK-GRLYA 684 (695)
Q Consensus 668 ve~Gth~eLl~~-~g~Y~ 684 (695)
+|.|+.++++++ .-.|.
T Consensus 234 VE~G~~~~i~~~p~hpYT 251 (539)
T COG1123 234 VETGPTEEILSNPQHPYT 251 (539)
T ss_pred EEecCHHHHHhccCCccc
Confidence 999999999986 34443
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=330.58 Aligned_cols=191 Identities=20% Similarity=0.344 Sum_probs=161.4
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ +.++ ++||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 689999999963 2355 599999999999999999999999999999999999999999999887643 35699
Q ss_pred cccCCce-eeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcE
Q 005467 530 FVGQEPQ-LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608 (695)
Q Consensus 530 ~V~Qd~~-LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~I 608 (695)
|++|++. +|+.|++|||.++......++++.++++..++.++....+ ..||||||||++||||++++|++
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~~rl~la~al~~~p~~ 144 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKC---------YSLSSGMQKIVAIARLIACQSDL 144 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccCh---------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999875 4778999999886321123456777778887766544321 37999999999999999999999
Q ss_pred EEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEE
Q 005467 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 660 (695)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~Iv 660 (695)
|+|||||++||+++.+.+.+.|.+.. .+++|+|+|||+++.++.||.|.
T Consensus 145 lllDEP~~~LD~~~~~~l~~~l~~~~---~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 145 WLLDEVETNLSKENRDLLNNLIVMKA---NSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHH---hCCCEEEEEeCCccccchhheec
Confidence 99999999999999999999997543 24689999999999999999774
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=310.43 Aligned_cols=211 Identities=30% Similarity=0.449 Sum_probs=178.9
Q ss_pred eEEEEEEeeecCCCCc-cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH---H
Q 005467 449 HVQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---L 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~---l 524 (695)
-|++++++.+-+.... ..+|++|+|.|++||.+|||||||||||||+-+|+|+-+|++|+|++.|+++.+++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 4788888888764322 36999999999999999999999999999999999999999999999999999998664 4
Q ss_pred H-hhhccccCCceee-eeeccccccccCC--cCCC-c--hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 525 R-EKIGFVGQEPQLL-QMDIKSNIMYGCP--KDVK-N--EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 525 R-~~I~~V~Qd~~LF-~~TI~eNI~~g~~--~~~~-~--eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
| +++|+|+|..+|. +.|-.||..+-.. .+.. + +.-.+-++++|+.+.....|. .|||||.||+|
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~---------qLSGGEQQRVA 156 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPA---------QLSGGEQQRVA 156 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCcc---------ccCchHHHHHH
Confidence 4 5899999999988 5799999976421 1111 1 113345666777666666663 69999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEe
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEV 670 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~ 670 (695)
||||+...|+||+-||||.+||.+|-++|.+.+.++.. ..|.|.++|||+++...+|||++-|.+|+|++.
T Consensus 157 iARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr--e~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 157 LARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR--ERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhh--hcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 99999999999999999999999999999999988754 368899999999999999999999999999863
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=378.34 Aligned_cols=219 Identities=26% Similarity=0.471 Sum_probs=175.3
Q ss_pred eEEEEEEeeecCC--CCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc-Ccc---CCcch--
Q 005467 449 HVQFVNISFHYPS--RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID-GFP---LTDLD-- 520 (695)
Q Consensus 449 ~I~f~nVsF~Y~~--~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id-G~d---i~~i~-- 520 (695)
-|+++||+++|++ +...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |.+ +.+.+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4899999999963 112469999999999999999999999999999999999999999999996 643 33332
Q ss_pred -hHHHHhhhccccCCceeee-eeccccccccCCcCCC----chhHHHHHHHhhHhH-----hHhcCCCCccccccccccC
Q 005467 521 -IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVK----NEDIEWAAKQAYVHE-----FILSLPCGYETLVDDDLLS 589 (695)
Q Consensus 521 -~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~----~eei~~A~~~a~l~~-----fI~~LP~G~dT~vge~~LS 589 (695)
...+|++||||+|++.+|. .|+.||+.++...... ++++.++++..++.+ +....| ..||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~---------~~LS 429 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYP---------DELS 429 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCCh---------hhCC
Confidence 2345778999999998886 5999999864110111 123334444444421 111111 3799
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 668 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv 668 (695)
||||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+. .|+|+|+|||+++.+.. ||+|++|++|+++
T Consensus 430 gGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 507 (520)
T TIGR03269 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE--MEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507 (520)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH--cCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999887532 36899999999999865 9999999999999
Q ss_pred Eeccchhhhh
Q 005467 669 EVGNHAELLH 678 (695)
Q Consensus 669 e~Gth~eLl~ 678 (695)
+.|+++++.+
T Consensus 508 ~~g~~~~~~~ 517 (520)
T TIGR03269 508 KIGDPEEIVE 517 (520)
T ss_pred EECCHHHHHh
Confidence 9999988764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=385.72 Aligned_cols=222 Identities=25% Similarity=0.424 Sum_probs=183.3
Q ss_pred eEEEEEEeeecCCC------CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC---CceEEEcCccCCcc
Q 005467 449 HVQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDL 519 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~------~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~---~G~I~idG~di~~i 519 (695)
+++|.++. +++.. .++++|+|+|++|+|||.+||+||||||||||+++|+|..+|. +|+|.+||.++.
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 46666666 55322 1357999999999999999999999999999999999999885 899999999875
Q ss_pred hhHHHHhhhccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhc--CCCCccccccc----cccCCcc
Q 005467 520 DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS--LPCGYETLVDD----DLLSGGQ 592 (695)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~--LP~G~dT~vge----~~LSGGQ 592 (695)
...+|+.+|||+|++.+|. .||+|||.|+..-.. ..++...-+...+++.++. |++..||.+|+ +.|||||
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGq 171 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRM-PRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGE 171 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcch
Confidence 3568899999999999995 599999998732111 1111112233345555665 45678999997 2799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecc-c-ccccCeEEEeeCCeEEEe
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-T-IKAVDRIVVIDDGRIIEV 670 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrls-t-i~~aD~IvvL~~G~Ive~ 670 (695)
|||++|||||+++|++|+||||||+||+.+...+.+.|+++.+ +|+|+|+++|+++ . .+.||+|++|++|+++++
T Consensus 172 rkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~---~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~ 248 (617)
T TIGR00955 172 RKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ---KGKTIICTIHQPSSELFELFDKIILMAEGRVAYL 248 (617)
T ss_pred hhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh---CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEE
Confidence 9999999999999999999999999999999999999998853 3799999999997 3 578999999999999999
Q ss_pred ccchhhhh
Q 005467 671 GNHAELLH 678 (695)
Q Consensus 671 Gth~eLl~ 678 (695)
|+++|+.+
T Consensus 249 G~~~~~~~ 256 (617)
T TIGR00955 249 GSPDQAVP 256 (617)
T ss_pred CCHHHHHH
Confidence 99999853
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=377.80 Aligned_cols=215 Identities=27% Similarity=0.442 Sum_probs=175.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC--CCceEEEcCccCCcchhHH-HHh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRW-LRE 526 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p--~~G~I~idG~di~~i~~~~-lR~ 526 (695)
|+++||+++|++ .++|+||||++++||++||+||||||||||+++|+|+++| ++|+|.+||+++...+... .|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 689999999964 3699999999999999999999999999999999999987 7999999999998776544 456
Q ss_pred hhccccCCceeee-eeccccccccCCcC-----CCchhHHHHHHHhhHhHhHhcC--CCCc-cccccccccCCccchhHH
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSL--PCGY-ETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~~~-----~~~eei~~A~~~a~l~~fI~~L--P~G~-dT~vge~~LSGGQkQRIa 597 (695)
.||||+|++.+|. .|++||+.++.... .+.++.. ..+++.++.+ +..+ +..+ ..||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~--~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLRELQLDADNVTRPV--GDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHcCCCCCcccCch--hhCCHHHHHHHH
Confidence 7999999998886 59999998873110 1111211 1223333332 1111 1112 369999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eL 676 (695)
|||||+.+|++|||||||++||+++.+.+.+.|.++.+ .|+|+|+|||+++.+.. ||+|++|++|++++.|+.++.
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA---HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 99999999999999999999999999999999998743 36899999999999865 999999999999999987765
Q ss_pred h
Q 005467 677 L 677 (695)
Q Consensus 677 l 677 (695)
.
T Consensus 229 ~ 229 (500)
T TIGR02633 229 S 229 (500)
T ss_pred C
Confidence 3
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=324.31 Aligned_cols=222 Identities=27% Similarity=0.462 Sum_probs=182.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH-Hhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l-R~~ 527 (695)
-++++||+-.|+. .++|++|||++++||+++++|++|+||||+++.|+|+.+|.+|+|.++|.|+...+++.. |.-
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3789999999974 369999999999999999999999999999999999999999999999999999976654 667
Q ss_pred hccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhc
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~ 604 (695)
|+||||.-.+|. -||.||+.+|.. ...+++-.. ..+++-.+-+|. +...... +.|||||+|-+||||||+.
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~-~~~~~~~~~----~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAY-ARRDKEAQE----RDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhh-ccccccccc----ccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 999999999996 699999998832 111111110 001122222332 1111111 3799999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhcCc
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKGR 681 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~~g 681 (695)
+|++|+|||||.+|-|.-.++|.++++++++. .+-||++|-++.... +-|||-+||++|+|+..|+.+||.++..
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~--~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE--GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHc--CCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 99999999999999999999999999999642 357999999999886 5699999999999999999999987643
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=377.32 Aligned_cols=216 Identities=25% Similarity=0.416 Sum_probs=175.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh--cCCCceEEEc---------------
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYID--------------- 512 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly--~p~~G~I~id--------------- 512 (695)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999964 36999999999999999999999999999999999996 7999999997
Q ss_pred --------CccCC-------cch---hHHHHhhhccccCC-ceeee-eeccccccccCC-cCCC----chhHHHHHHHhh
Q 005467 513 --------GFPLT-------DLD---IRWLREKIGFVGQE-PQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAY 567 (695)
Q Consensus 513 --------G~di~-------~i~---~~~lR~~I~~V~Qd-~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~ 567 (695)
|.++. ..+ ...+|+.++||+|+ +.+|. .|++||+.++.. ...+ ++++.++++..+
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 33331 111 23467889999998 56776 599999987521 1122 233445556665
Q ss_pred HhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEe
Q 005467 568 VHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 647 (695)
Q Consensus 568 l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIa 647 (695)
+.++....| ..||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++.+. .|+|||+||
T Consensus 158 l~~~~~~~~---------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tviivt 226 (520)
T TIGR03269 158 LSHRITHIA---------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKA--SGISMVLTS 226 (520)
T ss_pred ChhhhhcCc---------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHh--cCcEEEEEe
Confidence 554443322 369999999999999999999999999999999999999999999987432 368999999
Q ss_pred eeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 648 HRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 648 Hrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|+++.+. .||+|++|++|++++.|+++++.++
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 9999986 4999999999999999999888653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=337.35 Aligned_cols=203 Identities=28% Similarity=0.412 Sum_probs=160.2
Q ss_pred EEEEEEeeecCCC----CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc--Cc--cCCcchh
Q 005467 450 VQFVNISFHYPSR----PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID--GF--PLTDLDI 521 (695)
Q Consensus 450 I~f~nVsF~Y~~~----~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id--G~--di~~i~~ 521 (695)
|+++||+++|++. ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+| |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 11369999999999999999999999999999999999999999999998 42 6655554
Q ss_pred HH---H-HhhhccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCc
Q 005467 522 RW---L-REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG 591 (695)
Q Consensus 522 ~~---l-R~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGG 591 (695)
.. + ++.++||+|++.+|. .|+.|||.+... ...+ ++++.++++..++.+... +.. ...||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~~--~~~LS~G 153 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW------HLP--PATFSGG 153 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh------hCC--cccCCHH
Confidence 43 3 457999999998886 599999976411 1122 223333444444332211 111 2379999
Q ss_pred cchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEee
Q 005467 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVID 663 (695)
Q Consensus 592 QkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~ 663 (695)
||||++||||++++|++|||||||++||+++.+.+.+.|.++.+ +|+|+|+|||+++.+. .||+|+.+.
T Consensus 154 ~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 154 EQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA---RGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhcceeEecC
Confidence 99999999999999999999999999999999999999998743 3689999999999885 699999863
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=330.75 Aligned_cols=221 Identities=29% Similarity=0.481 Sum_probs=181.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH-Hhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l-R~~I 528 (695)
++.+|++.+|++ -.+++||||++++||++||+||+||||||++|++.|+|+|++|+|+++|.||..+++... |.-|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 578999999975 369999999999999999999999999999999999999999999999999999987765 4568
Q ss_pred ccccCCceeee-eeccccccccCCcC----------CCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPKD----------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQR 595 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~~----------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQR 595 (695)
+-.+|.+.+|+ .|+.||+..|.... ....+..++.+.| .+.++. -|++-.-.+ ++||+||+.|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A--~~~Le~--vgL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERA--RELLEF--VGLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHH--HHHHHH--cCCchhhcchhhcCChhHhHH
Confidence 88999999996 59999999872100 0001111222221 122222 133333333 3799999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccch
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~ 674 (695)
+-|||||..+|++|+||||.++|.++....+.+.|++++++ .|.|+++|-|++..+.. ||||+||+.|+++.+|+++
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~--~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~ 235 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR--GGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPE 235 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc--CCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHH
Confidence 99999999999999999999999999999999999999753 46899999999999865 9999999999999999999
Q ss_pred hhhhc
Q 005467 675 ELLHK 679 (695)
Q Consensus 675 eLl~~ 679 (695)
|..++
T Consensus 236 eV~~d 240 (250)
T COG0411 236 EVRNN 240 (250)
T ss_pred HHhcC
Confidence 98764
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=377.31 Aligned_cols=224 Identities=25% Similarity=0.420 Sum_probs=175.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-CCCceEEEcCccCCcchh-HHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDI-RWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-p~~G~I~idG~di~~i~~-~~lR~ 526 (695)
-|+++||+++|+.+.+.++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+. +.+|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953212469999999999999999999999999999999999999 599999999998865432 45577
Q ss_pred hhccccCCc---eee-eeeccccccccCCcCCCc-hhHHHHHHHhhHhHhHhcCCCCccc-cccc--cccCCccchhHHH
Q 005467 527 KIGFVGQEP---QLL-QMDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFILSLPCGYET-LVDD--DLLSGGQKQRIAI 598 (695)
Q Consensus 527 ~I~~V~Qd~---~LF-~~TI~eNI~~g~~~~~~~-eei~~A~~~a~l~~fI~~LP~G~dT-~vge--~~LSGGQkQRIaI 598 (695)
.++||+|++ .+| ..|+.||+.++....... ..+........+++.++.+ |++. .... ..||||||||++|
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRL--KVKTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhc--CccCCCcccccccCCHHHHHHHHH
Confidence 899999996 355 469999998762101100 0000011112234444444 2321 1121 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|||++.+|++|||||||++||+.+.+.+.+.|.++.+ +|+|+|+|||+++.+.. ||++++|++|+|+..|+.+++.
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ---QGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 9999999999999999999999999999999998753 37899999999999865 9999999999999999988874
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=383.58 Aligned_cols=217 Identities=35% Similarity=0.491 Sum_probs=182.7
Q ss_pred eEEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH---
Q 005467 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL--- 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l--- 524 (695)
-|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++.+.+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999997421 2469999999999999999999999999999999999999999999999999998876654
Q ss_pred -HhhhccccCCceeee-eeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 525 -REKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 525 -R~~I~~V~Qd~~LF~-~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
|+.++|++|++.+|. .|+.||+.++... ..+ +++..++++..++++.++..| ..||||||||++
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~---------~~LS~Gq~qrv~ 154 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQP---------SQLSGGQQQRVS 154 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCc---------ccCCHHHHHHHH
Confidence 568999999999996 5999999875211 111 112233344444433333322 379999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||++++|++|||||||++||.++.+.+.+.|.++.+ +++|+|+|||+++.++.||++++|++|+++++|+.+|..
T Consensus 155 LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~---~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 155 IARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD---RGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999999988743 368999999999999899999999999999999999886
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=340.81 Aligned_cols=224 Identities=31% Similarity=0.494 Sum_probs=185.9
Q ss_pred eEEEEEEeeecCCCCc--------cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch
Q 005467 449 HVQFVNISFHYPSRPT--------VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~--------~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~ 520 (695)
-++.+||...||-+.+ ..+.++|||++++||+++|||+|||||||+-..|+|+.+++ |+|.++|+++..++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 4799999999974321 25889999999999999999999999999999999999876 99999999999888
Q ss_pred hHH---HHhhhccccCCce--eee-eeccccccccC---CcCCC----chhHHHHHHHhhHhHhHh-cCCCCcccccccc
Q 005467 521 IRW---LREKIGFVGQEPQ--LLQ-MDIKSNIMYGC---PKDVK----NEDIEWAAKQAYVHEFIL-SLPCGYETLVDDD 586 (695)
Q Consensus 521 ~~~---lR~~I~~V~Qd~~--LF~-~TI~eNI~~g~---~~~~~----~eei~~A~~~a~l~~fI~-~LP~G~dT~vge~ 586 (695)
.+. +|+++-+|+|||+ |-. .||.+=|.=|- .+..+ ++++.+|++.+|++.-.. ..| .
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYP---------h 425 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYP---------H 425 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCC---------c
Confidence 665 5789999999997 221 35444433221 12333 456777888888876544 233 2
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCC
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 665 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G 665 (695)
.+|||||||||||||+.-+|++++|||||||||..-.+.|.+.|+++.+ +.|-+=++|||+|..++. ||+++||.+|
T Consensus 426 EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~--k~~LsYLFISHDL~VvrAl~~~viVm~~G 503 (534)
T COG4172 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQ--KHGLSYLFISHDLAVVRALCHRVIVMRDG 503 (534)
T ss_pred ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHH--HhCCeEEEEeccHHHHHHhhceEEEEeCC
Confidence 6999999999999999999999999999999999999999999998854 357899999999999986 9999999999
Q ss_pred eEEEeccchhhhhc-CchhH
Q 005467 666 RIIEVGNHAELLHK-GRLYA 684 (695)
Q Consensus 666 ~Ive~Gth~eLl~~-~g~Y~ 684 (695)
+|||+|+-+++.++ .-.|.
T Consensus 504 kiVE~G~~~~if~~P~~~YT 523 (534)
T COG4172 504 KIVEQGPTEAVFANPQHEYT 523 (534)
T ss_pred EEeeeCCHHHHhcCCCcHHH
Confidence 99999999999987 45554
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=338.18 Aligned_cols=197 Identities=25% Similarity=0.443 Sum_probs=164.7
Q ss_pred eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCcee---eeeecccccccc
Q 005467 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL---LQMDIKSNIMYG 549 (695)
Q Consensus 473 l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~L---F~~TI~eNI~~g 549 (695)
|+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. ..|+.++||+|++.+ |+.|+.||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998764 346789999999976 457999999875
Q ss_pred CC--------c-CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCc
Q 005467 550 CP--------K-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620 (695)
Q Consensus 550 ~~--------~-~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~ 620 (695)
.. + ...++++.++++..++.++....| ..||||||||++||||++++|++|||||||++||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV---------GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 21 0 112345667777777765543322 25999999999999999999999999999999999
Q ss_pred ccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhcCchhHHHHh
Q 005467 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 688 (695)
Q Consensus 621 ~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~ 688 (695)
.+.+.+.+.|.++.+ +++|+|++||+++.+. .||+|+++ +|++++.|+++++.+.+ .+.+++.
T Consensus 147 ~~~~~l~~~l~~~~~---~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~~-~~~~~~~ 210 (223)
T TIGR03771 147 PTQELLTELFIELAG---AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDPA-PWMTTFG 210 (223)
T ss_pred HHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcChH-HHHHHhC
Confidence 999999999998743 3689999999999875 59999999 79999999999987653 4555553
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=328.70 Aligned_cols=176 Identities=31% Similarity=0.481 Sum_probs=148.4
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc--chhHHHHhhhccccCCc--eeeee
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREKIGFVGQEP--QLLQM 540 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~--i~~~~lR~~I~~V~Qd~--~LF~~ 540 (695)
+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .+...+|+.++||+|++ .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999998852 23446788999999998 57889
Q ss_pred eccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccc
Q 005467 541 DIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT 615 (695)
Q Consensus 541 TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaT 615 (695)
|++|||.++.. ...++ +++.++++..++.++.+..| ..||||||||++||||++++|++|||||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT---------HCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh---------hhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999988621 11222 34556666666666554433 369999999999999999999999999999
Q ss_pred cccCcccchhhhhHHHhhhccccCcceEEEEeeeccc
Q 005467 616 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 652 (695)
Q Consensus 616 SaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst 652 (695)
++||+++.+.+.+.|.+..+ +++|+|+|||++..
T Consensus 156 ~~LD~~~~~~~~~~l~~~~~---~~~tili~sH~~~~ 189 (190)
T TIGR01166 156 AGLDPAGREQMLAILRRLRA---EGMTVVISTHDVDL 189 (190)
T ss_pred ccCCHHHHHHHHHHHHHHHH---cCCEEEEEeecccc
Confidence 99999999999999998753 36899999999865
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=362.30 Aligned_cols=215 Identities=25% Similarity=0.352 Sum_probs=175.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.++++|++|+|+++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999764334699999999999999999999999999999999999999999999999752
Q ss_pred ccccCCceee-eeeccccccccCC-cCCCchh----HHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLL-QMDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF-~~TI~eNI~~g~~-~~~~~ee----i~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
++.+.+.++ ..|++|||.++.. ...++++ +.++++.+++.++++..| ..||||||||++|||||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~---------~~LSGGQrQRVaLArAL 158 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPV---------KTYSSGMKSRLGFAISV 158 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCc---------ccCCHHHHHHHHHHHHH
Confidence 112223333 3599999987421 1223333 344666666666655433 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcCc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGR 681 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~g 681 (695)
+.+|++|||||||++||+.+...+.+.|.++.+ +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++..+-+
T Consensus 159 ~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~---~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~ 235 (549)
T PRK13545 159 HINPDILVIDEALSVGDQTFTKKCLDKMNEFKE---QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD 235 (549)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHH
Confidence 999999999999999999999999999988742 36899999999999865 99999999999999999999988766
Q ss_pred hhHHHHh
Q 005467 682 LYAKLVK 688 (695)
Q Consensus 682 ~Y~~l~~ 688 (695)
.|.+.|.
T Consensus 236 ~~~~~~~ 242 (549)
T PRK13545 236 EFLKKYN 242 (549)
T ss_pred HHHHHHh
Confidence 6666543
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=340.83 Aligned_cols=200 Identities=22% Similarity=0.363 Sum_probs=163.1
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeee-eecc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIK 543 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-~TI~ 543 (695)
.++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|.+||. +++++|++.+++ .|+.
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-------------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-------------EeEEecccCCCCCCcHH
Confidence 46999999999999999999999999999999999999999999999994 345677776553 6999
Q ss_pred ccccccCC-cCCCchhHHH----HHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEecccccc
Q 005467 544 SNIMYGCP-KDVKNEDIEW----AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 618 (695)
Q Consensus 544 eNI~~g~~-~~~~~eei~~----A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaL 618 (695)
||+.++.. ...+.++..+ +++..++.+++... -..||||||||++||||++.+|++|||||||++|
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---------~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 104 ENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQP---------VKKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC---------cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 99986421 1233344332 33444444333221 1379999999999999999999999999999999
Q ss_pred CcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcCchhHHHHhh
Q 005467 619 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKR 689 (695)
Q Consensus 619 D~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~~ 689 (695)
|+.+.+.+.+.|.++.+ .++|+|++||++..+.. ||+|++|++|+|++.|++++++++.+.|.+.+..
T Consensus 175 D~~~~~~l~~~L~~~~~---~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 243 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKE---QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKK 243 (264)
T ss_pred CHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHhHHHHHHHHh
Confidence 99999999999988742 36899999999999865 9999999999999999999999886666655543
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=335.01 Aligned_cols=196 Identities=26% Similarity=0.343 Sum_probs=155.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
+..+|++.+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... ....+
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~ 94 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG 94 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc
Confidence 677788888864 4699999999999999999999999999999999999999999999999876321 11122
Q ss_pred cccCCceeeeeeccccccccCC-cCCCchh----HHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~-~~~~~ee----i~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
+ ..+.|++||+.++.. ...+.++ +.++++..++ ++..++.+ ..||||||||++||||+++
T Consensus 95 ~------~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~--~~LSgG~~qrv~laral~~ 159 (224)
T cd03220 95 F------NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSEL-------GDFIDLPV--KTYSSGMKARLAFAIATAL 159 (224)
T ss_pred C------CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------hhhhhCCh--hhCCHHHHHHHHHHHHHhc
Confidence 2 235799999987631 1122222 2233333333 33333333 3699999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
+|++|||||||++||+.+.+.+.+.|.+..+ +++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 160 ~p~llllDEP~~gLD~~~~~~~~~~l~~~~~---~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLK---QGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999998743 3689999999999886 59999999999998876
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=372.01 Aligned_cols=214 Identities=18% Similarity=0.347 Sum_probs=171.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh-HHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~-~~lR~~ 527 (695)
-|+++|+++.|. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 489999999762 38999999999999999999999999999999999999999999999998865443 456778
Q ss_pred hccccCCc---eeee-eeccccccccCCcC---C-------CchhHHHHHHHhhHhHhHhcC--C-CCccccccccccCC
Q 005467 528 IGFVGQEP---QLLQ-MDIKSNIMYGCPKD---V-------KNEDIEWAAKQAYVHEFILSL--P-CGYETLVDDDLLSG 590 (695)
Q Consensus 528 I~~V~Qd~---~LF~-~TI~eNI~~g~~~~---~-------~~eei~~A~~~a~l~~fI~~L--P-~G~dT~vge~~LSG 590 (695)
||||+|++ .+|. .|++||+.++.... . +.++ ....+.+.++.+ + +-.++.+ ..|||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~--~~LSg 412 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD-----EQRTAENQRELLALKCHSVNQNI--TELSG 412 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHH-----HHHHHHHHHHhcCCCCCCccCcc--ccCCh
Confidence 99999984 5775 59999998762100 0 1111 111233344433 1 1122222 36999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEE
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIE 669 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive 669 (695)
|||||++|||||+.+|++||||||||+||..+.+.+.+.|+++.+ +|+|+|+|||++..+. .||+|++|++|++++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD---DGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998753 3689999999998875 599999999999999
Q ss_pred eccchhhh
Q 005467 670 VGNHAELL 677 (695)
Q Consensus 670 ~Gth~eLl 677 (695)
.|+..+-+
T Consensus 490 ~~~~~~~~ 497 (510)
T PRK09700 490 ILTNRDDM 497 (510)
T ss_pred EecCcccC
Confidence 88764433
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=309.19 Aligned_cols=216 Identities=27% Similarity=0.448 Sum_probs=186.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+.+|+|++-.++ .+|+++||+++|||++||+||+|+|||||+|.|+|...|++|++.+||.++.++...++-++-+
T Consensus 2 i~a~nls~~~~Gr---~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeecc---eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 7889999998654 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcee-eeeeccccccccCCcCC-----Cchh--HHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 530 FVGQEPQL-LQMDIKSNIMYGCPKDV-----KNED--IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 530 ~V~Qd~~L-F~~TI~eNI~~g~~~~~-----~~ee--i~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
+.||++.| |.-|+.|=+.||+.+.- .+++ ..+|+.++++.-|-.+. | ..|||||+||+.+||.
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~---y------~~LSGGEqQRVqlARv 149 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRD---Y------RTLSGGEQQRVQLARV 149 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccc---h------hhcCchHHHHHHHHHH
Confidence 99999985 89999999999964431 1333 45566677665443221 2 2699999999999999
Q ss_pred hhc------CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccch
Q 005467 602 ILR------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 602 ll~------~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~ 674 (695)
|.. ++++|+||||||+||..-.+.+++..+++.+ +|..|+.|=|+|... ..||||++|.+||++..|+++
T Consensus 150 LaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~---~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 150 LAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR---EGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHh---cCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHH
Confidence 976 3458999999999999999999988888854 468999999999986 569999999999999999999
Q ss_pred hhhhcC
Q 005467 675 ELLHKG 680 (695)
Q Consensus 675 eLl~~~ 680 (695)
+.+...
T Consensus 227 ~vlt~E 232 (259)
T COG4559 227 DVLTDE 232 (259)
T ss_pred HhcCHH
Confidence 988643
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=311.50 Aligned_cols=223 Identities=26% Similarity=0.503 Sum_probs=185.1
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH-Hh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-RE 526 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l-R~ 526 (695)
+.+..+|+..+|..+ +|.+||||++++||+|++.||+|+||||...++.|+.+|++|+|.+||.|+..++.... |-
T Consensus 3 ~~L~a~~l~K~y~kr---~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCCe---eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 357899999999753 69999999999999999999999999999999999999999999999999999997654 44
Q ss_pred hhccccCCceeeee-eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhh
Q 005467 527 KIGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll 603 (695)
-|||+|||+.+|.+ ||.|||+..- +..+.+.+.+.++..+++.++++- +...-.. ..||||||.|+-|||||.
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vl--E~~~~d~~~~~~~~~l~~LL~ef~--i~hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVL--EIREKDLKKAERKEELDALLEEFH--ITHLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHH--hhhhcchhHHHHHHHHHHHHHHhc--hHHHhcCcccccccchHHHHHHHHHHh
Confidence 69999999999975 9999998652 233333333444444444444331 1111111 279999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeec-ccccccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl-sti~~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
.||+.++||||.|++||.+-..|++.+..++. +|--|++.-|+. +|+.-|||.+++.+|+|..+|+++|+.++.
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~---rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD---RGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHh---CCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 99999999999999999999999999998863 467888888988 667889999999999999999999998764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=367.18 Aligned_cols=223 Identities=22% Similarity=0.387 Sum_probs=172.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-CCceEEEcCccCCcch-hHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLD-IRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G~I~idG~di~~i~-~~~lR~ 526 (695)
-|+++|++++|++..+..+|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+ ...+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 48999999999532123699999999999999999999999999999999999996 8999999999886543 356788
Q ss_pred hhccccCCc---eeee-eeccccccccCCcCCCc-hhHHHHHHHhhHhHhHhcCCC---CccccccccccCCccchhHHH
Q 005467 527 KIGFVGQEP---QLLQ-MDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFILSLPC---GYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 527 ~I~~V~Qd~---~LF~-~TI~eNI~~g~~~~~~~-eei~~A~~~a~l~~fI~~LP~---G~dT~vge~~LSGGQkQRIaI 598 (695)
+||||+|++ .+|. .|+++|+.++....... ..+........+.++++.+.- -.++.+ ..||||||||++|
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~LSgGqkqrv~l 414 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI--GRLSGGNQQKAVL 414 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc--ccCCHHHHHHHHH
Confidence 999999996 3665 69999998862111100 000001111223334443311 012211 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eL 676 (695)
|||++.+|++|||||||++||..+...+++.|+++.+ .|+|+|+|||+++.+.. ||+|++|++|+|+..++-+++
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ---EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999988753 36899999999999864 999999999999987765543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=295.49 Aligned_cols=214 Identities=29% Similarity=0.501 Sum_probs=183.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc--CCcc----hhH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP--LTDL----DIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d--i~~i----~~~ 522 (695)
+|++++++|.|+.. ++|.||+|+-+.||++.+.||||+|||||++.|.=+--|.+|+..|.|.. .++- ...
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 58999999999753 69999999999999999999999999999999999999999999998873 3332 245
Q ss_pred HHHhhhccccCCceeee-eeccccccccCCc---CCCch----hHHHHHHHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 523 WLREKIGFVGQEPQLLQ-MDIKSNIMYGCPK---DVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~---~~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
.+|+.+|+|+|+-+|+. -|+-||+-=+ |- ..+++ +-.+.++...+.+|-+..|- .|||||.|
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enliea-p~kv~gl~~~qa~~~a~ellkrlrl~~~adr~pl---------hlsggqqq 148 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEA-PCRVLGLSKDQALARAEKLLKRLRLKPYADRYPL---------HLSGGQQQ 148 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhh-hHHHhCCCHHHHHHHHHHHHHHhccccccccCce---------ecccchhh
Confidence 78999999999999995 7999998643 21 12332 33445666777778777774 48999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth 673 (695)
|+||||||.-+|++|++||||+|||+|-.+.|.+.++++.. .|-|-++|||.....++ |.+++.||+|+|+|+|+|
T Consensus 149 rvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~---tgitqvivthev~va~k~as~vvyme~g~ive~g~a 225 (242)
T COG4161 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred hHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh---cCceEEEEEeehhHHHhhhhheEeeecCeeEeecch
Confidence 99999999999999999999999999999999999999853 57999999999999876 999999999999999998
Q ss_pred hhhhh
Q 005467 674 AELLH 678 (695)
Q Consensus 674 ~eLl~ 678 (695)
+-.-.
T Consensus 226 ~~ft~ 230 (242)
T COG4161 226 SCFTE 230 (242)
T ss_pred hhccC
Confidence 86654
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=400.77 Aligned_cols=225 Identities=24% Similarity=0.404 Sum_probs=188.4
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
..|+++||+++|+++ ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+.
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 359999999999632 2469999999999999999999999999999999999999999999999999975 56678899
Q ss_pred hccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
+|||||++.+|+ .|++|||.++.. ...+ ++++.+.++..++.+.....| .+||||||||++||||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~---------~~LSGGqKQRLsLArA 1075 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEA---------QDLSGGMQRKLSVAIA 1075 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHHHH
Confidence 999999999996 599999987521 1122 233444555555443332222 3799999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc-
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK- 679 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~- 679 (695)
|+.+|++|+||||||+||+.+.+.+.+.|++.+ +|+|+|++||+++.+.. ||||++|++|+++..|+.++|.++
T Consensus 1076 Li~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~----~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1076 FVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 999999999999999999999999999999883 36999999999999864 999999999999999999999876
Q ss_pred -CchhHHHH
Q 005467 680 -GRLYAKLV 687 (695)
Q Consensus 680 -~g~Y~~l~ 687 (695)
.|+|-.+.
T Consensus 1152 g~gy~l~~~ 1160 (2272)
T TIGR01257 1152 GTGFYLTLV 1160 (2272)
T ss_pred CCcEEEEEE
Confidence 34444443
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=302.70 Aligned_cols=215 Identities=32% Similarity=0.489 Sum_probs=183.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc---------
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--------- 519 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i--------- 519 (695)
.++.+|+..+|+. ..||++|||+.++|++++|+|.|||||||+++++.=+-.|+.|+|.++|..++--
T Consensus 6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 5889999999974 3599999999999999999999999999999999999999999999999877522
Q ss_pred ----hhHHHHhhhccccCCceeee-eeccccccccCCcC---CCc----hhHHHHHHHhhHhHhHhcCCCCccccccccc
Q 005467 520 ----DIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKD---VKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDL 587 (695)
Q Consensus 520 ----~~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~---~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~ 587 (695)
..+-+|.+.|+|+|...|++ .|+.||..=+ |-+ .+. |+-+.-+.++|+.|--+.-| ..
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEa-PvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP---------~~ 152 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEA-PVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP---------AH 152 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhc-chHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc---------cc
Confidence 24567889999999999995 8999998644 211 122 22233456667666555544 35
Q ss_pred cCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCe
Q 005467 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 666 (695)
Q Consensus 588 LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~ 666 (695)
|||||.||.||||||.-+|+++++||||||||+|---+|.+.+.++.+ +|||.++|||.+...++ +.+++.|.+|.
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe---EgrTMv~VTHEM~FAR~Vss~v~fLh~G~ 229 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE---EGRTMVVVTHEMGFARDVSSHVIFLHQGK 229 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH---hCCeEEEEeeehhHHHhhhhheEEeecce
Confidence 999999999999999999999999999999999999999999998864 48999999999999987 89999999999
Q ss_pred EEEeccchhhhhc
Q 005467 667 IIEVGNHAELLHK 679 (695)
Q Consensus 667 Ive~Gth~eLl~~ 679 (695)
|-|+|+++|+..+
T Consensus 230 iEE~G~P~qvf~n 242 (256)
T COG4598 230 IEEEGPPEQVFGN 242 (256)
T ss_pred ecccCChHHHhcC
Confidence 9999999999875
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=348.71 Aligned_cols=211 Identities=33% Similarity=0.490 Sum_probs=177.7
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH-HHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~-~lR~~ 527 (695)
-++++|++.+|++ .++|+||||++.|||+.|++|++|||||||+|+|.|.|+|++|+|++||+++.-.++. ....-
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4789999999985 4799999999999999999999999999999999999999999999999999866654 55567
Q ss_pred hccccCCceeee-eeccccccccCCcC-----CCchhHHHHHHHhhHhHhHhcCC--CCccccccccccCCccchhHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPKD-----VKNEDIEWAAKQAYVHEFILSLP--CGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~~-----~~~eei~~A~~~a~l~~fI~~LP--~G~dT~vge~~LSGGQkQRIaIA 599 (695)
|+.|.||..|+. -||+|||-+|+.+. .+..++.+.++. .+..+- ...++.|+ +||+||||.++||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~-----~l~~lg~~~~~~~~v~--~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE-----LLARLGLDIDPDTLVG--DLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH-----HHHHcCCCCChhhhhh--hCCHHHHHHHHHH
Confidence 999999999995 69999999995322 233444443332 233321 12444443 6999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEecc
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gt 672 (695)
||+..+++|||||||||+|+....+.+.+.+++++. +|.++|+||||+..+.. ||||.||.+|+.+..++
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~---~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKA---QGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999999999999999988889999999863 58999999999999855 99999999999987776
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=318.13 Aligned_cols=201 Identities=28% Similarity=0.512 Sum_probs=181.3
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc----chhHHHHhhhccccCCceee-eeec
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRWLREKIGFVGQEPQLL-QMDI 542 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~----i~~~~lR~~I~~V~Qd~~LF-~~TI 542 (695)
-=++||+.+...++||-|+||||||||+|++.|+..|++|+|.+||.-+.| +...--+++||||+||.-|| +-||
T Consensus 14 ~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 347899999889999999999999999999999999999999999986644 44455688999999999999 5899
Q ss_pred cccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCccc
Q 005467 543 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622 (695)
Q Consensus 543 ~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~t 622 (695)
+-|++||. ...+.++..++++.-|+....+..|. +||||||||+||+|||+.+|++|++|||.|+||...
T Consensus 94 rgNL~YG~-~~~~~~~fd~iv~lLGI~hLL~R~P~---------~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 94 RGNLRYGM-WKSMRAQFDQLVALLGIEHLLDRYPG---------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred ecchhhhh-cccchHhHHHHHHHhCcHHHHhhCCC---------ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 99999994 56677889999999999999999885 599999999999999999999999999999999999
Q ss_pred chhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 623 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 623 E~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
.++|+--|+++++. -+--++.|||.+..+ +-||+|++|++|++...|.-+|..+..
T Consensus 164 K~EilpylERL~~e--~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 164 KREILPYLERLRDE--INIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hhHHHHHHHHHHHh--cCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 99999999999764 356799999999887 459999999999999999999998754
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=395.24 Aligned_cols=213 Identities=24% Similarity=0.416 Sum_probs=178.1
Q ss_pred eEEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc---CCCceEEEcCccCCcchhHHH
Q 005467 449 HVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE---PSDGQIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~---p~~G~I~idG~di~~i~~~~l 524 (695)
.++++||+++|+.++ ++++|+|||++|+|||++||+||||||||||+++|+|+.+ |++|+|++||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 379999999996322 2469999999999999999999999999999999999998 78899999999884 257
Q ss_pred HhhhccccCCce-eeeeeccccccccCC----cCCCchh----HHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccc
Q 005467 525 REKIGFVGQEPQ-LLQMDIKSNIMYGCP----KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 593 (695)
Q Consensus 525 R~~I~~V~Qd~~-LF~~TI~eNI~~g~~----~~~~~ee----i~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQk 593 (695)
|+.+|||+|++. ++..|++||+.++.. .+.++++ +.++++..+ |.+-.|+.+|+. +||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLE-------MESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC-------ChhhCCCeeCCCCCCCCHHHh
Confidence 899999999865 567899999998621 1223322 333444333 344578889863 7999999
Q ss_pred hhHHHHHHhhcCCc-EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc--cccCeEEEeeCC-eEEE
Q 005467 594 QRIAIARAILRDPA-ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI--KAVDRIVVIDDG-RIIE 669 (695)
Q Consensus 594 QRIaIARAll~~p~-ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti--~~aD~IvvL~~G-~Ive 669 (695)
||++|||||+.+|+ ||+||||||+||+.+...|++.|+++.+ +|+|+|+++|+++.. +.+|++++|++| ++++
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~---~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~ 984 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD---HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVY 984 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEE
Confidence 99999999999997 9999999999999999999999998853 479999999999973 679999999997 9999
Q ss_pred eccchh
Q 005467 670 VGNHAE 675 (695)
Q Consensus 670 ~Gth~e 675 (695)
.|+.++
T Consensus 985 ~G~~~~ 990 (1394)
T TIGR00956 985 FGDLGE 990 (1394)
T ss_pred ECCccc
Confidence 998754
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=363.40 Aligned_cols=217 Identities=24% Similarity=0.377 Sum_probs=171.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch-hHHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~-~~~lR~~ 527 (695)
.++++|++++ .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+ .+..|+.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999842 3899999999999999999999999999999999999999999999999886543 3456788
Q ss_pred hccccCCce---eee-eeccccccccCCcCCCchhH--HHHHHHhhHhHhHhcCCCCccc-cccc--cccCCccchhHHH
Q 005467 528 IGFVGQEPQ---LLQ-MDIKSNIMYGCPKDVKNEDI--EWAAKQAYVHEFILSLPCGYET-LVDD--DLLSGGQKQRIAI 598 (695)
Q Consensus 528 I~~V~Qd~~---LF~-~TI~eNI~~g~~~~~~~eei--~~A~~~a~l~~fI~~LP~G~dT-~vge--~~LSGGQkQRIaI 598 (695)
|+|++|++. +|. .|+.||+.++.......... ....+...+.+++..+ |++. .... ..||||||||++|
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrl~l 407 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSL--NIKTPSREQLIMNLSGGNQQKAIL 407 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhc--CcccCCccCccccCCHHHHHHHHH
Confidence 999999973 554 79999998763111000000 0000011233444443 2211 1111 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|||++.+|++|||||||++||..+.+.+.+.|.++.+ .|.|+|+|||+++.+. .||+|++|++|++++.|+.+|..
T Consensus 408 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~---~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 408 GRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA---QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 9999999999999999999999999999999988753 3689999999999985 59999999999999999998865
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=363.49 Aligned_cols=211 Identities=25% Similarity=0.465 Sum_probs=170.7
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh-HHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~-~~lR~~ 527 (695)
.|+++||++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. +.+|+.
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 489999984 37999999999999999999999999999999999999999999999999876654 346778
Q ss_pred hccccCCc---eee-eeeccccccccCCcC-------CCchhHHHHHHHhhHhHhHhcCCCCcc-ccccc--cccCCccc
Q 005467 528 IGFVGQEP---QLL-QMDIKSNIMYGCPKD-------VKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDD--DLLSGGQK 593 (695)
Q Consensus 528 I~~V~Qd~---~LF-~~TI~eNI~~g~~~~-------~~~eei~~A~~~a~l~~fI~~LP~G~d-T~vge--~~LSGGQk 593 (695)
||||+|++ .+| ..|++||+.++.... .+.++ ....+.++++.+ |++ -.... ..||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHAD-----EQQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHH-----HHHHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 355 479999998752100 11111 112233444433 221 11222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ +|+|+|+|||++..+. .||+|++|++|+|++.|+
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA---EGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999998753 3689999999999886 499999999999999998
Q ss_pred chhhh
Q 005467 673 HAELL 677 (695)
Q Consensus 673 h~eLl 677 (695)
.+++.
T Consensus 479 ~~~~~ 483 (501)
T PRK10762 479 REQAT 483 (501)
T ss_pred cccCC
Confidence 88764
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=395.04 Aligned_cols=220 Identities=19% Similarity=0.372 Sum_probs=187.4
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
.-|+++||+++|+++ .+++|+||||+|++||++||+|||||||||++|+|+|+.+|++|+|.++|.++.+ +....|+.
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 358999999999742 2469999999999999999999999999999999999999999999999999865 45567889
Q ss_pred hccccCCceeee-eeccccccccCC-cCCCch----hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
|||+||++.++. .|++||+.+... ...+++ .+.++++..++.++.+..+ +.||||||||++||||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~---------~~LSGGqKqRLslA~A 2084 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA---------GTYSGGNKRKLSTAIA 2084 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh---------hhCCHHHHHHHHHHHH
Confidence 999999998886 699999976311 122222 3344566666665544433 3699999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcC
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
++.+|+||+|||||++||+.+.+.+.+.|.++.+ +|+|+|++||+++.++. ||||++|++|+++..|+.++|.++-
T Consensus 2085 Li~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~---~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2085 LIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR---EGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 9999999999999999999999999999998753 37999999999999875 9999999999999999999997764
Q ss_pred c
Q 005467 681 R 681 (695)
Q Consensus 681 g 681 (695)
|
T Consensus 2162 g 2162 (2272)
T TIGR01257 2162 G 2162 (2272)
T ss_pred C
Confidence 4
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=363.24 Aligned_cols=207 Identities=25% Similarity=0.462 Sum_probs=164.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ..||
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999964 36999999999999999999999999999999999999999999999982 3599
Q ss_pred cccCCceeee-eeccccccccCCc---------------CCCchh---HHHH----------HHHhhHhHhHhcCCCCcc
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPK---------------DVKNED---IEWA----------AKQAYVHEFILSLPCGYE 580 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~---------------~~~~ee---i~~A----------~~~a~l~~fI~~LP~G~d 580 (695)
||+|++.+|. .|++||+.++... ....++ +.+. -....+++.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 9999998876 5999999875210 000000 0000 0012233344433 332
Q ss_pred ccccc---cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-c
Q 005467 581 TLVDD---DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-V 656 (695)
Q Consensus 581 T~vge---~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-a 656 (695)
....+ ..||||||||++|||||+.+|++|+|||||++||+++...+.+.|.+ .++|+|+|||+++.+.. |
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------~~~tiiivsHd~~~~~~~~ 219 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE------RNSTMIIISHDRHFLNSVC 219 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh------CCCeEEEEeCCHHHHHhhc
Confidence 22211 37999999999999999999999999999999999999999988864 25899999999999865 9
Q ss_pred CeEEEeeCCeEE-Eeccchhhhh
Q 005467 657 DRIVVIDDGRII-EVGNHAELLH 678 (695)
Q Consensus 657 D~IvvL~~G~Iv-e~Gth~eLl~ 678 (695)
|+|++|++|+++ +.|++++.++
T Consensus 220 d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 220 THMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred ceEEEEeCCEEEEecCCHHHHHH
Confidence 999999999994 7899998875
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=337.22 Aligned_cols=445 Identities=18% Similarity=0.235 Sum_probs=287.8
Q ss_pred HHHHHHHHHHHhhhcccccccccccccccc----ccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhH
Q 005467 202 LVKRLRETLYSALLFQDVYFFDTEAVGGLT----SRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSA 277 (695)
Q Consensus 202 ~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~----srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~ 277 (695)
...++..-++++.++ ...||.-.+.++.+ +|++.|+++.-..+......++...+.++....-++....+++.+.
T Consensus 153 ~R~~ltk~lh~~Y~k-~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~ 231 (659)
T KOG0060|consen 153 FRKNLTKYLHRLYFK-GFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVS 231 (659)
T ss_pred HHHHHHHHHHHHHhc-cceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHH
Confidence 334444444444443 33444444444443 5899999888776544444444333333333333555555556655
Q ss_pred HHHHHHH-HHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcccccc
Q 005467 278 LLICSFL-SIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGL 356 (695)
Q Consensus 278 l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (695)
+..-.++ .++...+++-.-+..-++++..++....-.+...|.+.|.-|+.++.|.....+..+.+.+.....- ...+
T Consensus 232 i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~-~~r~ 310 (659)
T KOG0060|consen 232 IFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELM-SFRF 310 (659)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 5544443 2333444444444444455555666666667777889999999998876666555554443322211 1111
Q ss_pred ce-eehhhhhhhheehheeecceeeec----cccChhhhhhhhhhh----hheeeeeeecccchhHHHHhhcchhhHHHh
Q 005467 357 WN-MSFITLYRSTQVMAVLLGGMSIMI----GQVSPEQLTKYVLYC----EWLIYATWRMVDNLSSLLQSIGATEKVFQL 427 (695)
Q Consensus 357 ~~-~~~~~l~~~~~~~~l~~g~~~v~~----g~is~G~l~~~~~~~----~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~ 427 (695)
+. ...+++-++..++.+++-+..+.+ +.++.-++...+... ..+...+..+......+..-.+-..||-|+
T Consensus 311 ~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el 390 (659)
T KOG0060|consen 311 WLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGEL 390 (659)
T ss_pred HHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHH
Confidence 11 112333344444443333333333 355665554433221 111111122222222233333455677666
Q ss_pred hccCC-------cc------c-c-------cccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEee
Q 005467 428 IDLLP-------SN------Q-F-------LSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGL 486 (695)
Q Consensus 428 l~~~~-------~~------~-~-------~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~ 486 (695)
++.-. +. . + ++...+..+.+..|+|++|+++=|++ +.-+.+|+||+|+.|+.+.|.||
T Consensus 391 ~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~ 469 (659)
T KOG0060|consen 391 MEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGP 469 (659)
T ss_pred HHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECC
Confidence 53211 00 0 0 00001112233569999999999875 34577889999999999999999
Q ss_pred cCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccC------CcCCCchhHH
Q 005467 487 SGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC------PKDVKNEDIE 560 (695)
Q Consensus 487 SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~------~~~~~~eei~ 560 (695)
||||||+|++.|.|+++-.+|.+.--...-. +.+-||||.|+.=.||+||-+-|-. ...++|++|.
T Consensus 470 sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~--------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~ 541 (659)
T KOG0060|consen 470 SGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP--------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDIL 541 (659)
T ss_pred CCCchhHHHHHHhcccccCCCeEEecccCCC--------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHH
Confidence 9999999999999999999999975332110 3478999999999999999998851 1247899999
Q ss_pred HHHHHhhHhHhHhcCCCCccccccc---cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccc
Q 005467 561 WAAKQAYVHEFILSLPCGYETLVDD---DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 637 (695)
Q Consensus 561 ~A~~~a~l~~fI~~LP~G~dT~vge---~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~ 637 (695)
+.++.+++....+. -+|+|+++-- +-||+||+||+|.||-+|.+|++-||||+|||+|.+.|.++.+.+++.
T Consensus 542 r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---- 616 (659)
T KOG0060|consen 542 RILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---- 616 (659)
T ss_pred HHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc----
Confidence 99999999876654 6899988864 489999999999999999999999999999999999999998888765
Q ss_pred cCcceEEEEeeecccccccCeEEEeeC
Q 005467 638 KTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 638 ~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
|-|.|-|.||-|.-+.-|.++-|+.
T Consensus 617 --giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 617 --GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred --CCeEEEeccHHHHHhhhhEEEEecC
Confidence 6899999999999999999999986
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=361.69 Aligned_cols=204 Identities=22% Similarity=0.366 Sum_probs=171.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +.+
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 5899999999964 36999999999999999999999999999999999999999999999883 479
Q ss_pred ccccCCce--ee-eeeccccccccCCcCCCchhHHHHHHHhhHh-HhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 529 GFVGQEPQ--LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 529 ~~V~Qd~~--LF-~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
|||+|++. ++ ..|+.||+.+.......++++.++++..++. +.....| ..||||||||++||||++.
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSV---------KVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcc---------cccCHHHHHHHHHHHHHhc
Confidence 99999974 34 3699999875311122344566667776652 3332222 3799999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE-EeccchhhhhcCc
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELLHKGR 681 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv-e~Gth~eLl~~~g 681 (695)
+|++|||||||++||+.+...+.+.|.+. +.|+|+|||+++.+.. ||+|++|++|+++ ..|++++++..+|
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~------~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~ 528 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY------EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQG 528 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHhC
Confidence 99999999999999999999999998875 2599999999999865 9999999999998 7899998877654
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=331.45 Aligned_cols=203 Identities=24% Similarity=0.291 Sum_probs=158.5
Q ss_pred EEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEE-----------EcCccCCcchh
Q 005467 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDI 521 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~-----------idG~di~~i~~ 521 (695)
.||+|+|+.. +++|+|+|+ ++|||++||+||||||||||+++|+|+++|++|+|. +||+++.+...
T Consensus 4 ~~~~~~y~~~--~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecCc--chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 4789999642 369999995 999999999999999999999999999999999996 88998877654
Q ss_pred HHHHh--hhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 522 RWLRE--KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 522 ~~lR~--~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
+..|. .+++++|++.++..++.+|+.........++++.++++..++.+.....+ ..||||||||++||
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LS~G~~qrv~la 151 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNI---------DQLSGGELQRVAIA 151 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHHHHHHH
Confidence 43433 36788887776665555554432111112345555666665544333221 37999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
||++++|++++|||||++||+++...+.+.|+++.+ +++|+|+|||+++.+.. ||+|++|+ |++.+.|
T Consensus 152 ral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~---~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 152 AALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE---DDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999999998753 36899999999999875 99999994 6676544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=363.28 Aligned_cols=208 Identities=27% Similarity=0.424 Sum_probs=165.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. ..|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 4899999999962 146999999999999999999999999999999999999999999999751 469
Q ss_pred ccccCCceeeee-eccccccccCCc---------------CCCc----------hhHHHHHHHh-------hHhHhHhcC
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCPK---------------DVKN----------EDIEWAAKQA-------YVHEFILSL 575 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~~---------------~~~~----------eei~~A~~~a-------~l~~fI~~L 575 (695)
|||+|++.+|+. |+.||+.++... ...+ +++.++++.+ .+.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999998864 999999875210 0000 1111122111 122223322
Q ss_pred CCCc---cccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc
Q 005467 576 PCGY---ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 652 (695)
Q Consensus 576 P~G~---dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst 652 (695)
|+ +..+ ..||||||||++||||++.+|++||||||||+||+++...+.+.|.+. +.|+|+|||+++.
T Consensus 153 --gl~~~~~~~--~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~------~~tviiisHd~~~ 222 (556)
T PRK11819 153 --RCPPWDAKV--TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY------PGTVVAVTHDRYF 222 (556)
T ss_pred --CCCcccCch--hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC------CCeEEEEeCCHHH
Confidence 22 2211 379999999999999999999999999999999999999999988875 2599999999999
Q ss_pred ccc-cCeEEEeeCCeEE-Eeccchhhhhc
Q 005467 653 IKA-VDRIVVIDDGRII-EVGNHAELLHK 679 (695)
Q Consensus 653 i~~-aD~IvvL~~G~Iv-e~Gth~eLl~~ 679 (695)
+.. ||+|++|++|+++ ..|++++..+.
T Consensus 223 ~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 251 (556)
T PRK11819 223 LDNVAGWILELDRGRGIPWEGNYSSWLEQ 251 (556)
T ss_pred HHhhcCeEEEEeCCEEEEecCCHHHHHHH
Confidence 865 9999999999986 78999887543
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=342.29 Aligned_cols=184 Identities=32% Similarity=0.506 Sum_probs=156.7
Q ss_pred EEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeee-eeccccccccCC-cCCC----c
Q 005467 483 IVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----N 556 (695)
Q Consensus 483 IVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~ 556 (695)
|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|+||+|++.+|. .|++||+.++.. ...+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999977654 4678999999999996 499999998731 1122 2
Q ss_pred hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhcc
Q 005467 557 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 636 (695)
Q Consensus 557 eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~ 636 (695)
+++.++++..++.++.+..| ..||||||||++|||||+++|++||||||||+||+++.+.+.+.|.++.+.
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKP---------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHHHcCCcchhcCCh---------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 34556666666665554444 369999999999999999999999999999999999999999999987532
Q ss_pred ccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 637 CKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 637 ~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
.|+|+|+|||+++.+. .||+|++|++|+|++.|+++|+.++
T Consensus 150 --~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 150 --LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred --cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 3689999999999875 4999999999999999999999875
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=301.20 Aligned_cols=209 Identities=29% Similarity=0.463 Sum_probs=169.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.+..++++.+|++.+ .++|+|+|++|.+||.++++||||||||||+|+++||.+|..|+|.+||.+|.--.-+ =
T Consensus 3 ~l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae-----r 76 (259)
T COG4525 3 MLNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE-----R 76 (259)
T ss_pred eeehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc-----c
Confidence 356789999998764 5699999999999999999999999999999999999999999999999988764432 3
Q ss_pred ccccCCceeee-eeccccccccCC-cCCCchh----HHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~~ee----i~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|+|+|++-|+. .++.||+.||-. ..+.+++ ..+.+..+++.++=.+.+ -.||||||||+.|||||
T Consensus 77 gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i---------~qLSGGmrQRvGiARAL 147 (259)
T COG4525 77 GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYI---------WQLSGGMRQRVGIARAL 147 (259)
T ss_pred eeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccce---------EeecchHHHHHHHHHHh
Confidence 99999999997 699999999931 1222221 112233333333211111 17999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEee--CCeEEEeccch
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVID--DGRIIEVGNHA 674 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~--~G~Ive~Gth~ 674 (695)
..+|+.|+||||.+|||+-|.+.+|+.|.++-+ ..|+.+++|||..+.. --|++++||+ .|+|++.=+.+
T Consensus 148 a~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~--~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 148 AVEPQLLLLDEPFGALDALTREQMQELLLDLWQ--ETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred hcCcceEeecCchhhHHHHHHHHHHHHHHHHHH--HhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999999999999999988755 3679999999999875 4699999998 58999865443
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=317.21 Aligned_cols=193 Identities=20% Similarity=0.250 Sum_probs=154.9
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEE-EcCccCCcchhHHHHhhhccccCCceeeee-eccc
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-IDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DIKS 544 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~-idG~di~~i~~~~lR~~I~~V~Qd~~LF~~-TI~e 544 (695)
||+||||+|++||++||+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|.. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 777533 13467778875 9999
Q ss_pred cccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccc
Q 005467 545 NIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (695)
Q Consensus 545 NI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE 623 (695)
||.+... ...+.+++.+.+. + ...+++.+++.++ .||||||||++||||++++|+++||||||+++|+.+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~-----~-~~~l~~~~~~~~~--~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~ 140 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCY-----Q-LTQLEQCYTDRVS--EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQ 140 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHH-----H-HhChhHHhhchHh--hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 9987521 1233333332221 1 2244444554443 5999999999999999999999999999999999999
Q ss_pred hhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhcCchhH
Q 005467 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKGRLYA 684 (695)
Q Consensus 624 ~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~ 684 (695)
+.+.+.+.+.. +++|+|++||+++.+. .||+|++|++|++++.|+-+++.+..+.|.
T Consensus 141 ~~~~~~l~~~~----~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 198 (213)
T PRK15177 141 LRMQAALACQL----QQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALFEQYQ 198 (213)
T ss_pred HHHHHHHHHHh----hCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHHHH
Confidence 99998886542 2479999999999986 599999999999999999998875544443
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=323.96 Aligned_cols=196 Identities=26% Similarity=0.388 Sum_probs=157.9
Q ss_pred eecCCCCccceeeeeeeEee-----cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccc
Q 005467 457 FHYPSRPTVPILNHVCLTIE-----ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 531 (695)
Q Consensus 457 F~Y~~~~~~~vL~~isl~I~-----~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V 531 (695)
|+|++. .+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 688753 458999999997 68999999999999999999999999999999999984 58999
Q ss_pred cCCce-eeeeeccccccccCCcCC-C-chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcE
Q 005467 532 GQEPQ-LLQMDIKSNIMYGCPKDV-K-NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAI 608 (695)
Q Consensus 532 ~Qd~~-LF~~TI~eNI~~g~~~~~-~-~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~I 608 (695)
+|++. .++.|++||+.+.. ... . .+...++++..++.+.....+ ..||||||||++|||||+++|++
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~---------~~LSgGe~qrv~iaraL~~~p~l 136 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSIT-KDFYTHPYFKTEIAKPLQIEQILDREV---------PELSGGELQRVAIAACLSKDADI 136 (246)
T ss_pred cccccCCCCCCHHHHHHHHh-hhccccHHHHHHHHHHcCCHHHhhCCh---------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 99987 46899999997652 111 1 122344555554443322211 36999999999999999999999
Q ss_pred EEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE--Eeccchhhhh
Q 005467 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII--EVGNHAELLH 678 (695)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv--e~Gth~eLl~ 678 (695)
+||||||++||+++...+.+.|.++.+. .++|+|+|||+++.+.. ||+|++|+++..+ ..++++++..
T Consensus 137 lllDEPt~~LD~~~~~~l~~~l~~~~~~--~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~ 207 (246)
T cd03237 137 YLLDEPSAYLDVEQRLMASKVIRRFAEN--NEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRS 207 (246)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHH
Confidence 9999999999999999999999987532 36899999999999875 9999999875444 5567777653
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=359.11 Aligned_cols=208 Identities=27% Similarity=0.418 Sum_probs=168.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~~--~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPPK--KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCCC--CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 48999999999722 3699999999999999999999999999999999999999999999975 2469
Q ss_pred ccccCCceeee-eeccccccccCCc----------------CCCc---------hhHHHHHHHhhHh-------HhHhcC
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPK----------------DVKN---------EDIEWAAKQAYVH-------EFILSL 575 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~----------------~~~~---------eei~~A~~~a~l~-------~fI~~L 575 (695)
|||+|++.+|. .|++|||.++... ...+ +++.++++.++.+ +.++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999885 5999999875210 0011 1344444444432 233332
Q ss_pred CCCc---cccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc
Q 005467 576 PCGY---ETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 652 (695)
Q Consensus 576 P~G~---dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst 652 (695)
|+ +..+ ..||||||||++||||++.+|++|||||||++||+++...+.+.|.+. ++|+|+|||+++.
T Consensus 151 --~l~~~~~~~--~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~------~~tvIiisHd~~~ 220 (552)
T TIGR03719 151 --RCPPWDADV--TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY------PGTVVAVTHDRYF 220 (552)
T ss_pred --CCCcccCch--hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC------CCeEEEEeCCHHH
Confidence 22 2221 379999999999999999999999999999999999999999988765 2599999999999
Q ss_pred ccc-cCeEEEeeCCeEE-Eeccchhhhhc
Q 005467 653 IKA-VDRIVVIDDGRII-EVGNHAELLHK 679 (695)
Q Consensus 653 i~~-aD~IvvL~~G~Iv-e~Gth~eLl~~ 679 (695)
+.. ||+|++|++|+++ ..|++++.++.
T Consensus 221 ~~~~~d~v~~l~~g~i~~~~g~~~~~~~~ 249 (552)
T TIGR03719 221 LDNVAGWILELDRGRGIPWEGNYSSWLEQ 249 (552)
T ss_pred HHhhcCeEEEEECCEEEEecCCHHHHHHH
Confidence 875 9999999999976 67999886553
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=296.11 Aligned_cols=143 Identities=35% Similarity=0.602 Sum_probs=133.1
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||. +.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 478999999974 26999999999999999999999999999999999999999999999994 4688
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEE
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~IL 609 (695)
|++| |||||+||++||||++++|+++
T Consensus 67 ~~~~------------------------------------------------------lS~G~~~rv~laral~~~p~il 92 (144)
T cd03221 67 YFEQ------------------------------------------------------LSGGEKMRLALAKLLLENPNLL 92 (144)
T ss_pred EEcc------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 8888 9999999999999999999999
Q ss_pred EEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCe
Q 005467 610 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 666 (695)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~ 666 (695)
||||||++||.++...+.+.++++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 93 llDEP~~~LD~~~~~~l~~~l~~~------~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 93 LLDEPTNHLDLESIEALEEALKEY------PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHc------CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999875 3799999999999865 89999999986
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=353.99 Aligned_cols=209 Identities=22% Similarity=0.302 Sum_probs=164.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-CCceEEEcCccCCc-chhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTD-LDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G~I~idG~di~~-i~~~~lR~ 526 (695)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.++.. .+...+|+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 5899999999964 3599999999999999999999999999999999998876 69999999987632 22345678
Q ss_pred hhccccCCceeee---eeccccccccCCc------CCC---chhHHHHHHHhhHhH-hHhcCCCCccccccccccCCccc
Q 005467 527 KIGFVGQEPQLLQ---MDIKSNIMYGCPK------DVK---NEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQK 593 (695)
Q Consensus 527 ~I~~V~Qd~~LF~---~TI~eNI~~g~~~------~~~---~eei~~A~~~a~l~~-fI~~LP~G~dT~vge~~LSGGQk 593 (695)
.||||+|++.++. .++.+|+.++... ... ++++.++++..++.+ ..+.-| ..||||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~LSgGq~ 407 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPF---------HSLSWGQQ 407 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCch---------hhCCHHHH
Confidence 9999999987643 3666666433100 011 123444455554432 222111 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc--cCeEEEeeCCeEEEec
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~--aD~IvvL~~G~Ive~G 671 (695)
||++||||++.+|++|||||||++||+++...+.+.|.++.+. .+.|+|+|||+++.+.. ||++++|++|+|++.-
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~--~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISE--GETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc--CCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999999999988532 23479999999999964 8999999999998743
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=355.09 Aligned_cols=213 Identities=20% Similarity=0.340 Sum_probs=170.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH-HHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW-LREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~-lR~~ 527 (695)
-|+++|+++ .+|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++...+... +|+.
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999983 1699999999999999999999999999999999999999999999999987766544 4568
Q ss_pred hccccCCc---eeee-eeccccccccC---CcC-CCchhHHHHHHHhhHhHhHhcC--C-CCccccccccccCCccchhH
Q 005467 528 IGFVGQEP---QLLQ-MDIKSNIMYGC---PKD-VKNEDIEWAAKQAYVHEFILSL--P-CGYETLVDDDLLSGGQKQRI 596 (695)
Q Consensus 528 I~~V~Qd~---~LF~-~TI~eNI~~g~---~~~-~~~eei~~A~~~a~l~~fI~~L--P-~G~dT~vge~~LSGGQkQRI 596 (695)
|+||||++ .+|. .|+.+|+.... ... ...++. ...+.++++.+ + +..++.+ ..||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~--~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRALNIKFNHAEQAA--RTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHcCCCCCCccCcc--ccCCcHHHHHH
Confidence 99999985 3665 59999985320 000 011111 11233344433 1 1122222 37999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~e 675 (695)
+||||++.+|++|||||||++||+.+.+.+.+.|.++.+ +|+|+|+|||+++.+.. ||+|++|++|+|+..|+.++
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~---~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA---QNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh---CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 999999999999999999999999999999999998753 36899999999999865 99999999999999999888
Q ss_pred hhhc
Q 005467 676 LLHK 679 (695)
Q Consensus 676 Ll~~ 679 (695)
+..+
T Consensus 490 ~~~~ 493 (510)
T PRK15439 490 INVD 493 (510)
T ss_pred CCHH
Confidence 7643
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=351.40 Aligned_cols=213 Identities=23% Similarity=0.400 Sum_probs=167.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH-HHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR-WLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~-~lR~~ 527 (695)
.|+++||+++| +++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+||.++...+.. .+|+.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 48999999985 2499999999999999999999999999999999999999999999999998766543 45677
Q ss_pred hccccCCce---eee-eecccc-----ccccCCc-C-CCchhHHHHHHHhhHhHhHhcCCCC---ccccccccccCCccc
Q 005467 528 IGFVGQEPQ---LLQ-MDIKSN-----IMYGCPK-D-VKNEDIEWAAKQAYVHEFILSLPCG---YETLVDDDLLSGGQK 593 (695)
Q Consensus 528 I~~V~Qd~~---LF~-~TI~eN-----I~~g~~~-~-~~~eei~~A~~~a~l~~fI~~LP~G---~dT~vge~~LSGGQk 593 (695)
++|++|++. +|. .|+.+| +.+.... . .+.++.. ..+.++++.+.-+ .++.+ ..||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~--~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSMRVKTPGHRTQI--GSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhcCccCCCccccc--ccCCcHHH
Confidence 999999953 565 466555 4322110 1 1112211 1223344443111 12222 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++++|+||||||||++||+.+...+.+.|.++.+ .|+|+|+|||+++.+. .||++++|++|+++..++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~---~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~ 474 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK---KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVD 474 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH---CCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999988743 3689999999999986 599999999999998886
Q ss_pred chhh
Q 005467 673 HAEL 676 (695)
Q Consensus 673 h~eL 676 (695)
.+++
T Consensus 475 ~~~~ 478 (491)
T PRK10982 475 TKTT 478 (491)
T ss_pred cccC
Confidence 6544
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=329.00 Aligned_cols=214 Identities=29% Similarity=0.469 Sum_probs=174.7
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc-hhHHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i-~~~~lR~~ 527 (695)
-++++|++..||+ ..+++||||+|++||+-||.|++|+|||||+++|.|+|+|++|+|++||++++=- +.+..|.-
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 4899999999984 4699999999999999999999999999999999999999999999999988644 45678889
Q ss_pred hccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhc
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~ 604 (695)
||+|.|+..|++ -|+.|||.+|.++.. --.+..+.....+++..++. |++-.... ..||-||+||+-|-+|||+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~-~~~~~~~~~~~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr 157 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSK-GGLIDRRQARARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALYR 157 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCcccc-ccccCHHHHHHHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHHhc
Confidence 999999999996 599999999943211 11111122222233333321 22222222 2699999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
+|++||||||||-|-+..-+++.+.++++.+ .|+|||+|||+|..++. |||+-||.+|+++..-
T Consensus 158 ~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~---~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~ 222 (501)
T COG3845 158 GARLLILDEPTAVLTPQEADELFEILRRLAA---EGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV 222 (501)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee
Confidence 9999999999999999988889999998864 58999999999999876 9999999999987543
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=294.89 Aligned_cols=223 Identities=26% Similarity=0.456 Sum_probs=190.8
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+.+|++ +.||+|+|++|++|++++|+||+|+|||||+.++.|+.++++|+|.+||.++.+++.+.|-+.++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 789999999975 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceeee-eeccccccccCCcC----CC--c-hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPKD----VK--N-EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~~----~~--~-eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
+.-|+.++-. -||+|=..||+-|- .+ | .-|.+|++.-++.+.- +.|= +.||||||||--||-.
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~----dryL-----d~LSGGQrQRAfIAMV 149 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLS----DRYL-----DELSGGQRQRAFIAMV 149 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchH----HHhH-----Hhcccchhhhhhhhee
Confidence 9999999775 59999999996321 12 2 2345566665554321 1111 2699999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
+..+.+.++||||..+||.+-...+++.|+++..+ -|||+++|-|+..... .+|.|+-|+||+++.+|+++|+++..
T Consensus 150 laQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~e--l~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~ 227 (252)
T COG4604 150 LAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADE--LGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPE 227 (252)
T ss_pred eeccCcEEEecCcccccchHHHHHHHHHHHHHHHH--hCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHH
Confidence 99999999999999999999999999999988654 4799999999999875 59999999999999999999999754
Q ss_pred chhHHHH
Q 005467 681 RLYAKLV 687 (695)
Q Consensus 681 g~Y~~l~ 687 (695)
.-.++|
T Consensus 228 -~L~eiy 233 (252)
T COG4604 228 -ILSEIY 233 (252)
T ss_pred -HHHHHh
Confidence 234444
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=289.85 Aligned_cols=156 Identities=45% Similarity=0.748 Sum_probs=145.1
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcc
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (695)
+++|++|+|++. ++++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||.++.+.....+++.++|
T Consensus 1 ~~~~~~~~~~~~---~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 1 EIENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred CeEEEEEEeCCe---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEE
Confidence 378999999753 69999999999999999999999999999999999999999999999999988777788889999
Q ss_pred ccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEE
Q 005467 531 VGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 610 (695)
Q Consensus 531 V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILI 610 (695)
++| |||||+||++||||++.+|++++
T Consensus 78 ~~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 78 VPQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred Eee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 999 99999999999999999999999
Q ss_pred EeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCe
Q 005467 611 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 666 (695)
Q Consensus 611 LDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~ 666 (695)
|||||++||.++...+.+.+.+..+ +++|++++||+++.+.. ||++++|++|+
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~---~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAE---EGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999988743 25899999999999988 69999999985
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=344.57 Aligned_cols=203 Identities=22% Similarity=0.335 Sum_probs=162.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++ ++ .|
T Consensus 324 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i 389 (556)
T PRK11819 324 VIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KL 389 (556)
T ss_pred EEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EE
Confidence 5899999999964 3699999999999999999999999999999999999999999999954 21 59
Q ss_pred ccccCCc-eeee-eeccccccccCCc-CCC--chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 529 GFVGQEP-QLLQ-MDIKSNIMYGCPK-DVK--NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 529 ~~V~Qd~-~LF~-~TI~eNI~~g~~~-~~~--~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
|||+|++ .++. .|+.||+.++... ... +++...+++..++.+. ..+..+ ..||||||||++||||++
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~--~~LSgG~~qrv~la~al~ 461 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG------DQQKKV--GVLSGGERNRLHLAKTLK 461 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh------HhcCch--hhCCHHHHHHHHHHHHHh
Confidence 9999997 5554 5999999876311 111 2222333333333210 011111 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeC-CeEE-Eeccchhhhhc
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-GRII-EVGNHAELLHK 679 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~-G~Iv-e~Gth~eLl~~ 679 (695)
.+|++|||||||++||+.+...+.+.|.+. . .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++++.
T Consensus 462 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 462 QGGNVLLLDEPTNDLDVETLRALEEALLEF-----P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-----C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999999999999999999876 2 399999999998865 999999996 7887 47888887654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=370.05 Aligned_cols=213 Identities=24% Similarity=0.427 Sum_probs=176.2
Q ss_pred eEEEEEEeeecCCC----------CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC--CCceEEEcCccC
Q 005467 449 HVQFVNISFHYPSR----------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPL 516 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~----------~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p--~~G~I~idG~di 516 (695)
.+.|+||+|..+.. ...++|+|||++++|||.+||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 68999999998531 123699999999999999999999999999999999999873 789999999886
Q ss_pred CcchhHHHHhhhccccCCceeee-eeccccccccC----CcCCCchh----HHHHHHHhhHhHhHhcCCCCccccccc--
Q 005467 517 TDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGC----PKDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDD-- 585 (695)
Q Consensus 517 ~~i~~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~----~~~~~~ee----i~~A~~~a~l~~fI~~LP~G~dT~vge-- 585 (695)
.+ ..+|+.+|||+|++.++. .|++|||.++. +.+.++++ +.+.++..++. +-.|+.+|.
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-------~~~~~~vg~~~ 1016 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-------NLKDAIVGLPG 1016 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-------hHhCCccCCCC
Confidence 43 457788999999987765 69999998752 11223222 34444444443 335777774
Q ss_pred -cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc--ccccCeEEEe
Q 005467 586 -DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVI 662 (695)
Q Consensus 586 -~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst--i~~aD~IvvL 662 (695)
+.||||||||++|||||+.+|+||+||||||+||+.+...|++.|+++.+ .|+|+|+++|+++. .+.||++++|
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~---~g~tVI~t~Hq~~~~i~~~~D~vllL 1093 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPSIDIFEAFDELLLM 1093 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCCCHHHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999998853 47999999999984 4679999999
Q ss_pred eC-CeEEEeccch
Q 005467 663 DD-GRIIEVGNHA 674 (695)
Q Consensus 663 ~~-G~Ive~Gth~ 674 (695)
++ |+++..|+.+
T Consensus 1094 ~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1094 KRGGQVIYSGPLG 1106 (1470)
T ss_pred cCCCEEEEECCcc
Confidence 96 8999999864
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=348.64 Aligned_cols=199 Identities=27% Similarity=0.431 Sum_probs=163.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++ +..|
T Consensus 508 ~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 58999999999643 3699999999999999999999999999999999999999999999876 2469
Q ss_pred ccccCCceeeeeecccccccc---CCcCCCchhHHHHHHHhhHhH-hHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 529 GFVGQEPQLLQMDIKSNIMYG---CPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 529 ~~V~Qd~~LF~~TI~eNI~~g---~~~~~~~eei~~A~~~a~l~~-fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
||++|++. ...++.+|..+. ..+..+++++.++++..++.+ .....| ..||||||||++||||++.
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~---------~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPM---------YTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCc---------cccCHHHHHHHHHHHHHhc
Confidence 99999863 334566664321 012345667777788777753 222222 3799999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE-Eeccchhh
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAEL 676 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv-e~Gth~eL 676 (695)
+|++|||||||++||..+...+.+.|.+. + .|+|+|||++..+.. ||+|++|++|+++ ..|++++.
T Consensus 645 ~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-----~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 645 KPHILLLDEPSNHLDLDAVEALIQGLVLF-----Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 99999999999999999999988888764 2 499999999999875 9999999999998 57877764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=342.34 Aligned_cols=202 Identities=21% Similarity=0.318 Sum_probs=161.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.+++ ++ .|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EE
Confidence 4899999999964 3699999999999999999999999999999999999999999999954 21 59
Q ss_pred ccccCCce-eee-eeccccccccCCc-CCC--chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 529 GFVGQEPQ-LLQ-MDIKSNIMYGCPK-DVK--NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 529 ~~V~Qd~~-LF~-~TI~eNI~~g~~~-~~~--~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
|||+|++. ++. .|+.||+.++... ... +++..++++..++.+.. .+..+ ..||||||||++||||++
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~--~~LSgGe~qrv~la~al~ 459 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD------QQKKV--GQLSGGERNRVHLAKTLK 459 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH------hcCch--hhCCHHHHHHHHHHHHHh
Confidence 99999973 554 5999999886311 111 12222333333321100 11111 379999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeC-CeEE-Eeccchhhhh
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD-GRII-EVGNHAELLH 678 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~-G~Iv-e~Gth~eLl~ 678 (695)
.+|++|||||||++||+.+...+.+.|.+. . .|+|+|||+++.+.. ||+|++|++ |+++ ..|+.++..+
T Consensus 460 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 460 SGGNVLLLDEPTNDLDVETLRALEEALLEF-----A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-----C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999999999999999999876 2 499999999999865 999999997 5876 4588776654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=292.75 Aligned_cols=162 Identities=28% Similarity=0.359 Sum_probs=138.0
Q ss_pred EEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcccc
Q 005467 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVG 532 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~ 532 (695)
.||+++|++ .++++| +|++++||+++|+||||||||||+++|+|+++|++|+|.+||.+ ++|++
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence 688999964 368998 49999999999999999999999999999999999999999953 67777
Q ss_pred CCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEe
Q 005467 533 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLD 612 (695)
Q Consensus 533 Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILD 612 (695)
|++. ||||||||++||||++.+|++++||
T Consensus 68 q~~~---------------------------------------------------LSgGq~qrv~laral~~~p~lllLD 96 (177)
T cd03222 68 QYID---------------------------------------------------LSGGELQRVAIAAALLRNATFYLFD 96 (177)
T ss_pred ccCC---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 7542 9999999999999999999999999
Q ss_pred ccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEe--ccchhhhhcCchh
Q 005467 613 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV--GNHAELLHKGRLY 683 (695)
Q Consensus 613 EaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~--Gth~eLl~~~g~Y 683 (695)
|||++||+++.+.+.+.+.+..+. .++|+|+|||+++.++. ||+|++|+++-.+.+ |.+..-.+....|
T Consensus 97 EPts~LD~~~~~~l~~~l~~~~~~--~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 168 (177)
T cd03222 97 EPSAYLDIEQRLNAARAIRRLSEE--GKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTREGINRF 168 (177)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhHHHHHH
Confidence 999999999999999999887431 23899999999999874 999999998866533 5555444333333
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=346.54 Aligned_cols=199 Identities=21% Similarity=0.325 Sum_probs=162.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++. ..|
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 4899999999964 36999999999999999999999999999999999999999999999741 269
Q ss_pred ccccCCc--eeee-eeccccccccCCcCCCchhHHHHHHHhhHhH-hHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 529 GFVGQEP--QLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 529 ~~V~Qd~--~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~-fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
||++|+. .++. .|+.+|+.-. .+...++++.++++..++.+ .... .+ ..||||||||++||||++.
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~-------~~--~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARL-APQELEQKLRDYLGGFGFQGDKVTE-------ET--RRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHh-CchhhHHHHHHHHHHcCCChhHhcC-------ch--hhCCHHHHHHHHHHHHHhc
Confidence 9999985 3433 4677776421 12223445555555555421 2221 11 3699999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE-Eeccchhhh
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELL 677 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv-e~Gth~eLl 677 (695)
+|++|||||||++||..+...+.+.|.+. + .|+|+|||++..+.. ||+|++|++|+++ ..|++++..
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-----E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-----C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999999999876 2 499999999999865 9999999999998 689988874
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=345.66 Aligned_cols=201 Identities=23% Similarity=0.432 Sum_probs=161.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999964 36999999999999999999999999999999999999999999999 5332 59
Q ss_pred ccccCCc-eeee-eeccccccccCCcCC--C--chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEP-QLLQ-MDIKSNIMYGCPKDV--K--NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~-~LF~-~TI~eNI~~g~~~~~--~--~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
||++|++ .++. .|+.||+.++. ... + ++++.+.++..++. ++..++.+ ..||||||||++||||+
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~--~~LSgGekqRl~la~al 455 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGK-QEVMVNGRPRHVLGYLQDFLFH------PKRAMTPV--KALSGGERNRLLLARLF 455 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhc-ccccccchHHHHHHHHHhcCCC------HHHHhChh--hhCCHHHHHHHHHHHHH
Confidence 9999986 3554 49999998763 222 1 12222233332221 01122222 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEee-CCeEEE-eccchhhhh
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID-DGRIIE-VGNHAELLH 678 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~-~G~Ive-~Gth~eLl~ 678 (695)
+.+|++|||||||++||..+...+.+.|.+. +.|+|+|||+...+.. ||+|++|+ +|++.+ .|++++-+.
T Consensus 456 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~------~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 456 LKPSNLLILDEPTNDLDVETLELLEELLDSY------QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC------CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 9999999999999999999999999888775 2599999999998864 99999998 899986 578887654
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=340.95 Aligned_cols=196 Identities=25% Similarity=0.328 Sum_probs=163.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+.+|++|+|.++ ..|
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4899999999963 25999999999999999999999999999999999999999999986 159
Q ss_pred ccccCCcee-eeeeccccccccCCcCCC-chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 529 GFVGQEPQL-LQMDIKSNIMYGCPKDVK-NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 529 ~~V~Qd~~L-F~~TI~eNI~~g~~~~~~-~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
||+||++.+ ++.|++||+.++. .... ++.+.++++..++.+..+..| ..||||||||++|||||+++|
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~---------~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSIT-DDLGSSYYKSEIIKPLQLERLLDKNV---------KDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHh-hhcChHHHHHHHHHHCCCHHHHhCCc---------ccCCHHHHHHHHHHHHHhcCC
Confidence 999999875 4679999998762 2222 234455666666655443322 369999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccch
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~ 674 (695)
++|||||||++||.++...+.+.|+++.+. .++|+|+|||++..+.. ||+|++|++ ++...|+..
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~--~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~~ 538 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEE--REATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHAS 538 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeecC
Confidence 999999999999999999999999987532 36899999999998864 999999965 888777633
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=288.51 Aligned_cols=211 Identities=25% Similarity=0.411 Sum_probs=171.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh-HHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~-~~lR~~ 527 (695)
-|+++||+.+|.+ +++|+|||++|+|||..+|+||+|||||||++++.+.++|++|.+.+.|+....-+. .++|++
T Consensus 31 li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 31 LIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred eEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 4899999999975 479999999999999999999999999999999999999999999999999987777 899999
Q ss_pred hccccCCce---eeeeecccccccc------CCc-CCCchhHHH---HHHHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 528 IGFVGQEPQ---LLQMDIKSNIMYG------CPK-DVKNEDIEW---AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 528 I~~V~Qd~~---LF~~TI~eNI~~g------~~~-~~~~eei~~---A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
||+|+-+-+ .=+.+++|=+.=| ... +.++++..+ .++..++.+..++ |- ..||.||||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r-~~--------~~LS~Ge~r 178 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR-PF--------GSLSQGEQR 178 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccC-ch--------hhcCHhHHH
Confidence 999985433 2245566655422 111 444444333 3344444332111 11 279999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
|+-||||++++|++|||||||++||....+...+.|.++... ..+.|+|+|||+.+.+. ..++++.+++|+++.+|.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~-~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS-PGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcC-CCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999999999888644 45689999999999986 489999999999998874
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=364.41 Aligned_cols=208 Identities=22% Similarity=0.307 Sum_probs=169.9
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh----cCCCceEEEcCccCCcchhHHHHhhhccccCCceeee-
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ- 539 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly----~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~- 539 (695)
+++|+|+|++++|||.+||+||||||||||+|+|+|.. .|.+|+|.+||.++.+.+ ..+|+.++||+|+..+|.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 46999999999999999999999999999999999986 579999999999886654 346778999999988776
Q ss_pred eeccccccccCC---c-----CCCchhHHHHHHHhhHhHhHhcCCCCccccccc---cccCCccchhHHHHHHhhcCCcE
Q 005467 540 MDIKSNIMYGCP---K-----DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD---DLLSGGQKQRIAIARAILRDPAI 608 (695)
Q Consensus 540 ~TI~eNI~~g~~---~-----~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge---~~LSGGQkQRIaIARAll~~p~I 608 (695)
.|++||+.++.. + +.++++..+.....-++.+ .|.+-.||.+|+ +.||||||||++||||++.+|++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATY--GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHc--CcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 599999988621 0 1222222111101112221 455567899997 48999999999999999999999
Q ss_pred EEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecc-cc-cccCeEEEeeCCeEEEeccchhhh
Q 005467 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS-TI-KAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrls-ti-~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
|+||||||+||+.+...+.+.|+++.+ ..|+|+|+++|+++ .+ +.+|+|++|++|+++..|+.+++.
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~--~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSAN--ILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHH--hcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 999999999999999999999999853 23689999999974 44 569999999999999999998874
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=284.37 Aligned_cols=154 Identities=31% Similarity=0.461 Sum_probs=124.5
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
.++|+|+||+|++|+++||+||||||||||+++++ +.+|+|.++|.. ... .|+.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 57999999999999999999999999999999985 369999998752 221 1334666665
Q ss_pred cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcC--CcEEEEeccccccCc
Q 005467 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRD--PAILLLDEATSALDS 620 (695)
Q Consensus 545 NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~--p~ILILDEaTSaLD~ 620 (695)
.++++..++ +..+ ... ..||||||||++||||++++ |++++|||||++||+
T Consensus 68 ---------------~~~l~~~~L---------~~~~-~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 68 ---------------LQFLIDVGL---------GYLT-LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred ---------------HHHHHHcCC---------Cccc-cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 123333332 2111 222 47999999999999999999 999999999999999
Q ss_pred ccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCe
Q 005467 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666 (695)
Q Consensus 621 ~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~ 666 (695)
++.+.+.+.|.++.+ .|+|+|+|||+++.++.||+|++|++|+
T Consensus 123 ~~~~~l~~~l~~~~~---~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 123 QDINQLLEVIKGLID---LGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 999999999988742 4799999999999998999999997644
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=338.15 Aligned_cols=208 Identities=24% Similarity=0.402 Sum_probs=151.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ +++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999974 369999999999999999999999999999999999999999999999852 255
Q ss_pred cccCCceeeeeeccccccccCC--cCCC----------c-hhHHHHH----------HHhhHhHhHhcCCCCccc-cccc
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCP--KDVK----------N-EDIEWAA----------KQAYVHEFILSLPCGYET-LVDD 585 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~--~~~~----------~-eei~~A~----------~~a~l~~fI~~LP~G~dT-~vge 585 (695)
|++|++..+..|+.+++.-+.. ...+ + .++.... ....+.+.+..+ |+.. ....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 5666443333333332221100 0000 0 0000000 001122233332 2321 1111
Q ss_pred --cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEe
Q 005467 586 --DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVI 662 (695)
Q Consensus 586 --~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL 662 (695)
..||||||||++|||||+.+|++|||||||++||.++...+.+.|.+. +.|+|+|||+...+.. ||+|++|
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~------~~tviivsHd~~~l~~~~d~i~~L 219 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY------QGTLILISHDRDFLDPIVDKIIHI 219 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHhcCEEEEE
Confidence 379999999999999999999999999999999999999988888764 3699999999999865 9999999
Q ss_pred eCCeEEE-eccchhhhhc
Q 005467 663 DDGRIIE-VGNHAELLHK 679 (695)
Q Consensus 663 ~~G~Ive-~Gth~eLl~~ 679 (695)
++|++.. .|++++....
T Consensus 220 ~~G~i~~~~g~~~~~~~~ 237 (638)
T PRK10636 220 EQQSLFEYTGNYSSFEVQ 237 (638)
T ss_pred eCCEEEEecCCHHHHHHH
Confidence 9999974 7888877653
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=273.66 Aligned_cols=230 Identities=28% Similarity=0.451 Sum_probs=181.6
Q ss_pred EEEEEEeeecCCC------CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH
Q 005467 450 VQFVNISFHYPSR------PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 450 I~f~nVsF~Y~~~------~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~ 523 (695)
++++|++.++..+ ....+.+.|||++++|+++||+|.+|||||||+|+|.|..+|++|+|++||.++.-=|-..
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 4566665554322 2235899999999999999999999999999999999999999999999999987666666
Q ss_pred HHhhhccccCCce-eee-----eec-----cccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCcc
Q 005467 524 LREKIGFVGQEPQ-LLQ-----MDI-----KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 592 (695)
Q Consensus 524 lR~~I~~V~Qd~~-LF~-----~TI-----~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQ 592 (695)
..++|-+++|||. =|+ |+| +-|=.+. +....++|.+-++.+|+ +|+-- ..--.-||-||
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~--~~~R~~~i~~TL~~VGL------~Pdha--n~~~~~la~~Q 154 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLE--PEQRRKQIFETLRMVGL------LPDHA--NYYPHMLAPGQ 154 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCC--hHHHHHHHHHHHHHhcc------Ccccc--ccchhhcCchh
Confidence 6788999999984 122 222 2222222 23345677778888886 35421 11224699999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
|||+|+||||+-+|+|+|-|||.++||......+.+.+.++.+ +.|-.-|.|+.++-.+++ +|+|+||++|+++|.|
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQe--k~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQE--KQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHH--HhCceEEEEechhhHhhhhcccEEEEecCceeecC
Confidence 9999999999999999999999999999999999888877754 357899999999999998 9999999999999999
Q ss_pred cchhhhhc--CchhHHHHhhhc
Q 005467 672 NHAELLHK--GRLYAKLVKRQT 691 (695)
Q Consensus 672 th~eLl~~--~g~Y~~l~~~q~ 691 (695)
+..|+++. ...-++|+.+-+
T Consensus 233 ~t~~v~a~P~~~~TkRlieShF 254 (267)
T COG4167 233 STADVLASPLHELTKRLIESHF 254 (267)
T ss_pred ChhhhhcCCccHHHHHHHHHHh
Confidence 99999874 455566665443
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=301.63 Aligned_cols=226 Identities=30% Similarity=0.436 Sum_probs=183.5
Q ss_pred eEEEEEEeeecCCC-CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-----CCceEEEcCccCCcchhH
Q 005467 449 HVQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-----SDGQIYIDGFPLTDLDIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-----~~G~I~idG~di~~i~~~ 522 (695)
-++++|++.+|... ...++++||||+|++||++||||+||||||--.+.++|+.+- .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 36788888777421 235799999999999999999999999999999999999964 479999999999999988
Q ss_pred HHHh----hhccccCCceee-e--ee----ccccccccC--CcCCCchhHHHHHHHhhHhH---hHhcCCCCcccccccc
Q 005467 523 WLRE----KIGFVGQEPQLL-Q--MD----IKSNIMYGC--PKDVKNEDIEWAAKQAYVHE---FILSLPCGYETLVDDD 586 (695)
Q Consensus 523 ~lR~----~I~~V~Qd~~LF-~--~T----I~eNI~~g~--~~~~~~eei~~A~~~a~l~~---fI~~LP~G~dT~vge~ 586 (695)
.+|. +|++++|||.-- | -| |.|-|++-+ ...+-.+++.+.++.+|+.+ .+++.| .
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP---------H 156 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP---------H 156 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC---------c
Confidence 8886 899999999521 1 12 344444431 11233456666777777644 222333 2
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCC
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 665 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G 665 (695)
.||||||||+.||-||..+|++||-||||.|||..-.+.|.+.|+++.+. -|..+++|||+|+.+++ ||||+||.+|
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~--~gMa~lfITHDL~iVr~~ADrV~VM~~G 234 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE--LGMAILFITHDLGIVRKFADRVYVMQHG 234 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH--hCcEEEEEeccHHHHHHhhhhEEEEecc
Confidence 69999999999999999999999999999999999999999999998653 57899999999999986 9999999999
Q ss_pred eEEEeccchhhhhc-CchhHH
Q 005467 666 RIIEVGNHAELLHK-GRLYAK 685 (695)
Q Consensus 666 ~Ive~Gth~eLl~~-~g~Y~~ 685 (695)
+|+|.|+-++|.+. ...|.+
T Consensus 235 ~ivE~~~t~~lF~~PqHpYTr 255 (534)
T COG4172 235 EIVETGTTETLFAAPQHPYTR 255 (534)
T ss_pred EEeecCcHHHHhhCCCChHHH
Confidence 99999999999986 455644
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=279.36 Aligned_cols=204 Identities=28% Similarity=0.456 Sum_probs=175.0
Q ss_pred ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCce--ee-ee
Q 005467 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ--LL-QM 540 (695)
Q Consensus 464 ~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~--LF-~~ 540 (695)
++++|+++||+|++|+++-|+|.+|||||||++.++|-..|++|+|+|||+|+..++...--..++-|+|||- .+ +.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 3579999999999999999999999999999999999999999999999999999999888889999999996 44 46
Q ss_pred eccccccccCCcC----CCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEecc
Q 005467 541 DIKSNIMYGCPKD----VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEA 614 (695)
Q Consensus 541 TI~eNI~~g~~~~----~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEa 614 (695)
||.||+.++..+. .+.. ...-......+-+..+|.|++-.++.+ -|||||||-++++-|.++.|+||+|||=
T Consensus 98 TieENl~la~~Rg~~rgl~~~--ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSA--LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchh--hhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 9999999873211 1111 112234445567888999999999985 8999999999999999999999999999
Q ss_pred ccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc-ccccCeEEEeeCCeEEEec
Q 005467 615 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 615 TSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst-i~~aD~IvvL~~G~Ive~G 671 (695)
|+||||.+...|++.=.++-+. .+-|+++|||++.- +..-+|.++|++|+|+-.=
T Consensus 176 TAALDPkta~~vm~lT~kiV~~--~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEE--HKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHh--cCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999887776543 46899999999976 5679999999999999543
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=331.95 Aligned_cols=207 Identities=29% Similarity=0.480 Sum_probs=151.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ .++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.. .+
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~ 68 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IV 68 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EE
Confidence 3899999999974 369999999999999999999999999999999999999999999998732 13
Q ss_pred ccccCCcee-eeeeccccccccCC-----------------cCCCchhHHHHHH-------------HhhHhHhHhcCCC
Q 005467 529 GFVGQEPQL-LQMDIKSNIMYGCP-----------------KDVKNEDIEWAAK-------------QAYVHEFILSLPC 577 (695)
Q Consensus 529 ~~V~Qd~~L-F~~TI~eNI~~g~~-----------------~~~~~eei~~A~~-------------~a~l~~fI~~LP~ 577 (695)
++++|++.. ..+++.+++..+.. .+..++.+..... ...+.+.++.+
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-- 146 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL-- 146 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--
Confidence 444554321 11333333221100 0000000100000 01122333332
Q ss_pred Ccc--ccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc
Q 005467 578 GYE--TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 655 (695)
Q Consensus 578 G~d--T~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~ 655 (695)
|++ ..+ ..||||||||++|||||+.+|++|||||||++||.++...+.+.|.+. +.|+|+|||+...+..
T Consensus 147 gl~~~~~~--~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~------~~tvlivsHd~~~l~~ 218 (635)
T PRK11147 147 GLDPDAAL--SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF------QGSIIFISHDRSFIRN 218 (635)
T ss_pred CCCCCCch--hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC------CCEEEEEeCCHHHHHH
Confidence 221 111 379999999999999999999999999999999999999999988875 2599999999999865
Q ss_pred -cCeEEEeeCCeEEE-eccchhhhhc
Q 005467 656 -VDRIVVIDDGRIIE-VGNHAELLHK 679 (695)
Q Consensus 656 -aD~IvvL~~G~Ive-~Gth~eLl~~ 679 (695)
||+|++|++|+++. .|++++.++.
T Consensus 219 ~~d~i~~L~~G~i~~~~g~~~~~~~~ 244 (635)
T PRK11147 219 MATRIVDLDRGKLVSYPGNYDQYLLE 244 (635)
T ss_pred hcCeEEEEECCEEEEecCCHHHHHHH
Confidence 99999999999985 5998877654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=355.09 Aligned_cols=208 Identities=23% Similarity=0.406 Sum_probs=169.7
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC---CceEEEcCccCCcchhHHHHhhhccccCCceeee-e
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-M 540 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~---~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-~ 540 (695)
.++|+|+|++|+|||.++|+||||||||||+|+|+|.++|+ +|+|.+||.++.+.. .|+.++||+|+..+|. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 35999999999999999999999999999999999999998 999999999987654 3778999999987775 6
Q ss_pred eccccccccCC-c----------CCCc----------hhHH---HHHHHh------hHhHhHh--cCCCCcccccccc--
Q 005467 541 DIKSNIMYGCP-K----------DVKN----------EDIE---WAAKQA------YVHEFIL--SLPCGYETLVDDD-- 586 (695)
Q Consensus 541 TI~eNI~~g~~-~----------~~~~----------eei~---~A~~~a------~l~~fI~--~LP~G~dT~vge~-- 586 (695)
|++||+.++.. . +.+. +++. +++... -.++.++ .|.+-.||.||+.
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999988521 0 0011 1111 111111 1123333 4555678999973
Q ss_pred -ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecc--cccccCeEEEee
Q 005467 587 -LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS--TIKAVDRIVVID 663 (695)
Q Consensus 587 -~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrls--ti~~aD~IvvL~ 663 (695)
.||||||||++||||++.+|++|+|||||++||+.+...|.+.|+++.+. .|+|+|+++|.++ ....||+|++|+
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~--~g~Tviis~Hqp~~~i~~lfD~vilL~ 412 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHL--TEATVLMSLLQPAPETFDLFDDIILLS 412 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHh--cCCEEEEEecCCCHHHHHHhheEEEee
Confidence 89999999999999999999999999999999999999999999988532 4689999999974 456799999999
Q ss_pred CCeEEEeccchhhh
Q 005467 664 DGRIIEVGNHAELL 677 (695)
Q Consensus 664 ~G~Ive~Gth~eLl 677 (695)
+|+++..|+.++++
T Consensus 413 ~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 413 EGQIVYQGPRDHIL 426 (1470)
T ss_pred CceEEEeCCHHHHH
Confidence 99999999999886
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=323.34 Aligned_cols=220 Identities=34% Similarity=0.519 Sum_probs=188.3
Q ss_pred ceEEEEEEeeecCCCC--ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC---CCceEEEcCccCCcchhH
Q 005467 448 GHVQFVNISFHYPSRP--TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQIYIDGFPLTDLDIR 522 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p---~~G~I~idG~di~~i~~~ 522 (695)
.+++|+|++.+-++.. .+.+|+|||.+++|||.+||.||||||||||++.|+|--++ .+|+|++||+ ..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchh
Confidence 3689999999987642 36799999999999999999999999999999999999975 7999999994 34678
Q ss_pred HHHhhhccccCCceeee-eeccccccccCC----cCCCchhHHHHHHHhhHhHhHhcCCCC--ccccccc---cccCCcc
Q 005467 523 WLREKIGFVGQEPQLLQ-MDIKSNIMYGCP----KDVKNEDIEWAAKQAYVHEFILSLPCG--YETLVDD---DLLSGGQ 592 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~----~~~~~eei~~A~~~a~l~~fI~~LP~G--~dT~vge---~~LSGGQ 592 (695)
.+|+.+|||+||..++. -||+|++.|... .+.+.+| +....++-|.+|..- -||.+|. +++||||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~-----k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEE-----KRERVEEVISELGLEKCADTLIGNPGIRGLSGGE 175 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHHcCChhhccceecCCCCCccccch
Confidence 89999999999999996 699999988731 1223333 334445556666554 7888985 4899999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc--ccccCeEEEeeCCeEEEe
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDDGRIIEV 670 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst--i~~aD~IvvL~~G~Ive~ 670 (695)
|+|++||--++.||+||+||||||+||+.+...+.+.|+++.+ +|||||+.=|.+|. .+..|++++|.+|+++..
T Consensus 176 rkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~---~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~ 252 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLAR---SGRTVICTIHQPSSELFELFDKLLLLSEGEVVYS 252 (613)
T ss_pred hhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHh---CCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEe
Confidence 9999999999999999999999999999999999999999875 38999999999987 467999999999999999
Q ss_pred ccchhhhh
Q 005467 671 GNHAELLH 678 (695)
Q Consensus 671 Gth~eLl~ 678 (695)
|+.+++.+
T Consensus 253 G~~~~~~~ 260 (613)
T KOG0061|consen 253 GSPRELLE 260 (613)
T ss_pred cCHHHHHH
Confidence 99988763
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=324.83 Aligned_cols=219 Identities=22% Similarity=0.319 Sum_probs=163.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh---cCCCceEEEcCccCC--cch---
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQIYIDGFPLT--DLD--- 520 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly---~p~~G~I~idG~di~--~i~--- 520 (695)
.|+++|++|+|++ .++|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|...++++. +.+
T Consensus 177 ~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 177 DIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 5999999999964 35999999999999999999999999999999999864 588999986655421 111
Q ss_pred ---------hHHHHhhhccccCCceeeeeeccccccccCCcCCCc----hhHHHHHHHhhH----------hHhHhcCCC
Q 005467 521 ---------IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN----EDIEWAAKQAYV----------HEFILSLPC 577 (695)
Q Consensus 521 ---------~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~----eei~~A~~~a~l----------~~fI~~LP~ 577 (695)
...+++.+++++|++.+...+..+|.........+. +++.++++..++ .+.+..+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l-- 331 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL-- 331 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC--
Confidence 122456689999988765555556643221111112 233333333332 1222222
Q ss_pred Cccccccc---cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc
Q 005467 578 GYETLVDD---DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 654 (695)
Q Consensus 578 G~dT~vge---~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~ 654 (695)
|++...-+ ..||||||||++|||||+.+|++|||||||++||+++...+.+.|.+. +.|+|+|||++..+.
T Consensus 332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~------~~tviivsHd~~~l~ 405 (718)
T PLN03073 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW------PKTFIVVSHAREFLN 405 (718)
T ss_pred CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc------CCEEEEEECCHHHHH
Confidence 22211111 379999999999999999999999999999999999999999888775 479999999999987
Q ss_pred c-cCeEEEeeCCeEE-Eeccchhhhh
Q 005467 655 A-VDRIVVIDDGRII-EVGNHAELLH 678 (695)
Q Consensus 655 ~-aD~IvvL~~G~Iv-e~Gth~eLl~ 678 (695)
. ||+|++|++|+++ ..|++++..+
T Consensus 406 ~~~d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 406 TVVTDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred HhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 6 9999999999996 5788776654
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=326.68 Aligned_cols=193 Identities=23% Similarity=0.295 Sum_probs=157.1
Q ss_pred EEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEE-----------EcCccCCcchh
Q 005467 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-----------IDGFPLTDLDI 521 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~-----------idG~di~~i~~ 521 (695)
++++++|+.+ ..+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~~--~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGVN--GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecCC--ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 4489999642 35999999 9999999999999999999999999999999999997 99999876543
Q ss_pred HH--HHhh----hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh
Q 005467 522 RW--LREK----IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 522 ~~--lR~~----I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
+- .+.. +.+++|.+.+|.+|++||+... + ..+++.++++..++.+..+. .+ ..||||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~-~~~~~~~~l~~l~l~~~~~~-------~~--~~LSgGe~qr 220 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---D-ERGKLDEVVERLGLENILDR-------DI--SELSGGELQR 220 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhh---h-HHHHHHHHHHHcCCchhhcC-------Ch--hhCCHHHHHH
Confidence 21 1122 4556667778889999999743 1 23456666666665443222 11 3699999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCC
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 665 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G 665 (695)
++||||++++|++|+||||||+||.++...+.+.|+++. . |+|+|+|+|+++.+.. ||+|++|++|
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~---~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA---E-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999874 2 6899999999999865 9999999873
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-33 Score=273.44 Aligned_cols=217 Identities=23% Similarity=0.475 Sum_probs=183.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.+++++|+.+|++ ..+++||||+++||++.+++||+|+||||.+++|+||.+|++|+|.++|.+++. ..+++|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 3789999999974 469999999999999999999999999999999999999999999999998765 456799
Q ss_pred ccccCCceeee-eeccccccccC-CcCCCchhHHHHHHHhhHhHhHhcCCC-CccccccccccCCccchhHHHHHHhhcC
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGC-PKDVKNEDIEWAAKQAYVHEFILSLPC-GYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~-~~~~~~eei~~A~~~a~l~~fI~~LP~-G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
||.|.|--|+. .|+.|-|.|-. -.....+|+. ..+..|.+++.- |+.|.- =..||-|..|+|-+--|++.+
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~-----~~~~~wLer~~i~~~~~~k-Ik~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ-----KKLQAWLERLEIVGKKTKK-IKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHhccccccccch-HHHhhhhhhHHHHHHHHHhcC
Confidence 99999999996 69999998752 1234444543 334556666532 121110 027999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcCc
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGR 681 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~g 681 (695)
|+++|||||.|+||+.+.+.+.+++.+++. +|.|||+-|||++-++. ||+++.|++|+-|-+|+-+...+..|
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~---~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKE---EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHh---cCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 999999999999999999999999999864 58999999999999976 99999999999999999998876443
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-32 Score=249.48 Aligned_cols=196 Identities=26% Similarity=0.438 Sum_probs=162.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC---CceEEEcCccCCcchhHHHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~---~G~I~idG~di~~i~~~~lR 525 (695)
.+.++||+.+-|++ -.|.|+||+|.|||++-|.||||||||||+.-+.|+.+++ +|++.+|++++..++.. +
T Consensus 2 ~l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 35789999988764 5899999999999999999999999999999999999885 79999999999888754 6
Q ss_pred hhhccccCCceeee-eeccccccccCCcCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
+++|+.+||+.||. -||-+||.|+-+++.. ......|++..+++++..+-|+ .||||||-|+|+-|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~---------tlSGGQrARvaL~R 147 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPA---------TLSGGQRARVALLR 147 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChh---------hcCcchHHHHHHHH
Confidence 89999999999996 6999999998654443 2334557888888888888775 59999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEE
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 660 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~Iv 660 (695)
+|+..|+.|+||||.|.||..-.....+-...-.+ ..|--++.|||++.-++.-.|++
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r--~agiPtv~VTHD~~DvpagsrVi 205 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVR--AAGIPTVQVTHDLQDVPAGSRVI 205 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHH--hcCCCeEEEecccccCCCCCeee
Confidence 99999999999999999998766555443322111 34678999999999877443443
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-33 Score=260.47 Aligned_cols=134 Identities=44% Similarity=0.708 Sum_probs=121.0
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeee-ccccc
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD-IKSNI 546 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~T-I~eNI 546 (695)
|+||||+|++||+++|+|+||||||||+++|+|+++|.+|+|.+||.++.+.+...+|+.++|++|++.+|.+. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999865 9999
Q ss_pred cccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCcEEEEecccc
Q 005467 547 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATS 616 (695)
Q Consensus 547 ~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ILILDEaTS 616 (695)
..++++.++++..++.++ .++.++. ..||||||||++||||++++|++||||||||
T Consensus 80 -------~~~~~~~~~l~~l~~~~~-------~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -------ESDERIEEVLKKLGLEDL-------LDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------HHHHHHHHHHHHTTHGGG-------TGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------cccccccccccccccccc-------cccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 235678888888877663 3445544 4899999999999999999999999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-32 Score=304.72 Aligned_cols=211 Identities=31% Similarity=0.507 Sum_probs=165.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++|++++|++ +++++|+||++.+|+++||||++|||||||+|+|+|...|++|+|...+. -+|
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 5899999999964 47999999999999999999999999999999999999999999999762 268
Q ss_pred ccccCCceeeee-eccccccccCCcCCC--chhHHHHHH---------H----------------hhHhHhHhcCCCCcc
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCPKDVK--NEDIEWAAK---------Q----------------AYVHEFILSLPCGYE 580 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~~~~~--~eei~~A~~---------~----------------a~l~~fI~~LP~G~d 580 (695)
||++|++.+.++ |+.|.+..+. .... ..+.+++.. . +.+..-...| |+.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~ 145 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGF-GELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFP 145 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhh-HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCC
Confidence 999999999965 9999988773 2111 111111110 0 1111222222 222
Q ss_pred ccccc-cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCe
Q 005467 581 TLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDR 658 (695)
Q Consensus 581 T~vge-~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~ 658 (695)
..-.. .+||||||-|++|||||+.+|++|+|||||++||.++-.-+.+-|.+. +| |+|+|||+-..+.+ |++
T Consensus 146 ~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-----~g-tviiVSHDR~FLd~V~t~ 219 (530)
T COG0488 146 DEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-----PG-TVIVVSHDRYFLDNVATH 219 (530)
T ss_pred cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-----CC-cEEEEeCCHHHHHHHhhh
Confidence 22001 379999999999999999999999999999999999999888888764 45 99999999999976 999
Q ss_pred EEEeeCCeEE-EeccchhhhhcCch
Q 005467 659 IVVIDDGRII-EVGNHAELLHKGRL 682 (695)
Q Consensus 659 IvvL~~G~Iv-e~Gth~eLl~~~g~ 682 (695)
|+-+|+|++. ..|+++.-++++..
T Consensus 220 I~~ld~g~l~~y~Gny~~~~~~r~~ 244 (530)
T COG0488 220 ILELDRGKLTPYKGNYSSYLEQKAE 244 (530)
T ss_pred eEEecCCceeEecCCHHHHHHHHHH
Confidence 9999999886 56888887765433
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=266.89 Aligned_cols=191 Identities=27% Similarity=0.438 Sum_probs=157.2
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
.++|+||||++++||++||||++|||||||+|+|+|.|+|++|+|.++|.--.-+.. ..|+-| +-|-||
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~p------elTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFDP------ELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCCc------ccchHH
Confidence 479999999999999999999999999999999999999999999999942212211 233322 357899
Q ss_pred ccccc-----CCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccC
Q 005467 545 NIMYG-----CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619 (695)
Q Consensus 545 NI~~g-----~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD 619 (695)
||.+- .....-++.+.+..+-|.+.+|++. |- ++.|-|.+-|||.|=|.--+|+|||+||..|..|
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-Pv--------ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD 179 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-PV--------KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGD 179 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-ch--------hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCC
Confidence 99643 1122345667778899999999865 64 3689999999999999999999999999999999
Q ss_pred cccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 620 ~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
+.=.++=.+.+++..+ +++|+|+|||.++.+++ ||++++|++|+|+..|+.+|.++
T Consensus 180 ~~F~~K~~~rl~e~~~---~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 180 AAFQEKCLERLNELVE---KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHHHHHHHHHHHHHHH---cCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9766655566666532 35899999999999976 99999999999999999999985
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-31 Score=258.58 Aligned_cols=216 Identities=29% Similarity=0.398 Sum_probs=182.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh--hcCCCceEEEcCccCCcchhHHH-H
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-R 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl--y~p~~G~I~idG~di~~i~~~~l-R 525 (695)
-++++|++.+-.++ +++|++|||+|++||+-||.||+|||||||.+.|+|. |++++|+|++||+||.++++++. |
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 36889999887642 3799999999999999999999999999999999997 68999999999999999998875 4
Q ss_pred hhhccccCCceeeee-eccccccccCCc--C------CCchhHHHHHHHhhHhH-hHhcCCCCccccccccccCCccchh
Q 005467 526 EKIGFVGQEPQLLQM-DIKSNIMYGCPK--D------VKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQR 595 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~-TI~eNI~~g~~~--~------~~~eei~~A~~~a~l~~-fI~~LP~G~dT~vge~~LSGGQkQR 595 (695)
.-|.+.+|.|.=+.| |+++=++.+.+. . ...+++.++++..++++ |.++ .|++ .+|||||.|
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R-------~vN~-GFSGGEkKR 152 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLER-------YVNE-GFSGGEKKR 152 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhc-------ccCC-CcCcchHHH
Confidence 568899999998887 777777755211 0 12456677777777776 3221 1222 599999999
Q ss_pred HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc--cCeEEEeeCCeEEEeccc
Q 005467 596 IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 596 IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~--aD~IvvL~~G~Ive~Gth 673 (695)
.-|+.+++-+|++.|||||-|+||-.+=+.|-+.+.+++. .++++++|||+-..+.. .|++-||-+|+|+..|.+
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~---~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE---EGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc---CCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH
Confidence 9999999999999999999999999999999999999874 47999999998888766 599999999999999998
Q ss_pred hhhhh
Q 005467 674 AELLH 678 (695)
Q Consensus 674 ~eLl~ 678 (695)
||..
T Consensus 230 -el~~ 233 (251)
T COG0396 230 -ELAE 233 (251)
T ss_pred -HHHH
Confidence 7765
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-31 Score=252.69 Aligned_cols=216 Identities=23% Similarity=0.430 Sum_probs=177.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC-ccCCcchhHHH-Hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG-FPLTDLDIRWL-RE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG-~di~~i~~~~l-R~ 526 (695)
.++++||+.+|++ -.+|+|+||+|.|||.=+|+||+|+||||++..+.|--+|+.|+++++| .|+..++.... |.
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 4789999999975 3599999999999999999999999999999999999999999999999 89999987666 55
Q ss_pred hhccccCCceeee-eeccccccccCCcCC-------------CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCcc
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPKDV-------------KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ 592 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~-------------~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQ 592 (695)
-||-=+|-|..|. -||+||+.++++.+- ..++|.+.+...++.+--.. + ...||-||
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~-~--------A~~LSHGq 152 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR-L--------AALLSHGQ 152 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhh-h--------hhhhccch
Confidence 6999999999996 599999988743221 11234444444433322111 1 13799999
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
||++-|+--+..+|++|+||||++++-.+.....-+.|.++ .+++++++|-|++..++. ||+|-||..|.+..+|
T Consensus 153 KQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~l----a~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EG 228 (249)
T COG4674 153 KQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSL----AGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEG 228 (249)
T ss_pred hhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHH----hcCceEEEEeccHHHHHHhhheeEEEeccceeecc
Confidence 99999999999999999999999999555555566677777 345899999999999976 9999999999999999
Q ss_pred cchhhhhcC
Q 005467 672 NHAELLHKG 680 (695)
Q Consensus 672 th~eLl~~~ 680 (695)
+-+|+.++.
T Consensus 229 sld~v~~dp 237 (249)
T COG4674 229 SLDEVQNDP 237 (249)
T ss_pred cHHHhhcCc
Confidence 999987653
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=264.38 Aligned_cols=208 Identities=27% Similarity=0.433 Sum_probs=162.5
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccc-cCCceeee-eecc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV-GQEPQLLQ-MDIK 543 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V-~Qd~~LF~-~TI~ 543 (695)
++.+||||+||||++++.+|++|+||||.+|+|.|+.-|++|.|.++|.+-.+-..+.+| ++++| .|-..|.- --+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~-~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR-SIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHH-HHHHHhhhhheeeeechhh
Confidence 589999999999999999999999999999999999999999999999987774444444 55544 45554332 1222
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCC-----CCccccccc--cccCCccchhHHHHHHhhcCCcEEEEecccc
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLP-----CGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATS 616 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP-----~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ILILDEaTS 616 (695)
|-+ ++.++....+-++|-+.+. -+++..+-. +.||=|||-|.-||-||+++|++|+|||||=
T Consensus 117 ds~-----------~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 117 DSL-----------EVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hhH-----------HHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 222 2222222222222222210 133433433 4899999999999999999999999999999
Q ss_pred ccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcCchhHHHH
Q 005467 617 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 617 aLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
+||......|.+.+++..+ ..+.||+..||.++-+.. ||||+.+++|+++..|+-++|.++-|.|++++
T Consensus 186 gLDV~aq~~ir~Flke~n~--~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k~~~ 255 (325)
T COG4586 186 GLDVNAQANIREFLKEYNE--ERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFS 255 (325)
T ss_pred CcchhHHHHHHHHHHHHHH--hhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCceEEE
Confidence 9999999999999988754 367899999999999865 99999999999999999999999988887654
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=273.34 Aligned_cols=192 Identities=26% Similarity=0.300 Sum_probs=125.0
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHH-HHHHhhhcCCCceEEEcCccCCcchhHHH-HhhhccccCCce---ee-
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFV-NLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REKIGFVGQEPQ---LL- 538 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl-~LL~rly~p~~G~I~idG~di~~i~~~~l-R~~I~~V~Qd~~---LF- 538 (695)
.++|+||||+|++||++||+||||||||||+ ..+. .+|++.+.+ +.+.... +-...+++++.. ++
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVE----SLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhh----cccchhhhhhcccCccccccccCCCc
Confidence 5799999999999999999999999999996 3332 145543321 0011100 001223333221 11
Q ss_pred eeeccccccccCCcCCCch---hHHHHHH-------HhhHhHhHhcCCCCccc-cccc--cccCCccchhHHHHHHhhcC
Q 005467 539 QMDIKSNIMYGCPKDVKNE---DIEWAAK-------QAYVHEFILSLPCGYET-LVDD--DLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 539 ~~TI~eNI~~g~~~~~~~e---ei~~A~~-------~a~l~~fI~~LP~G~dT-~vge--~~LSGGQkQRIaIARAll~~ 605 (695)
..++.+|.... ++..+-. ++.+... .....+.++.+ |+.. .... ..||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~~~ 155 (226)
T cd03270 79 AIAIDQKTTSR-NPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIGSG 155 (226)
T ss_pred eEEecCCCCCC-CCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHHhC
Confidence 12444554322 1111100 0000000 00012233332 2222 1222 37999999999999999999
Q ss_pred C--cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe------eCCeEEEec
Q 005467 606 P--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVG 671 (695)
Q Consensus 606 p--~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL------~~G~Ive~G 671 (695)
| ++|||||||++||+.+...+.+.|.++.+ +|.|+|+|||+++.++.||+|++| ++|+|+|+|
T Consensus 156 p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~---~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 156 LTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD---LGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 8 59999999999999999999999988742 468999999999999899999999 999999987
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-30 Score=290.20 Aligned_cols=204 Identities=27% Similarity=0.412 Sum_probs=170.3
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
.-++++||+|+|+++ +++++|+||.|++|+++|||||+|+|||||+|+|+|-..|.+|+|.++-. -+
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ 386 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VK 386 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eE
Confidence 358999999999753 57999999999999999999999999999999999999999999988641 25
Q ss_pred hccccCCc-eeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEP-QLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~-~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
|||.+|+. .++. .|+.|++.-+ .++..+.++...+...+...--..-|- +.||||||-|+++|+.++.+
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~-~~~~~e~~~r~~L~~f~F~~~~~~~~v--------~~LSGGEk~Rl~La~ll~~~ 457 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEG-FPDGDEQEVRAYLGRFGFTGEDQEKPV--------GVLSGGEKARLLLAKLLLQP 457 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhh-CccccHHHHHHHHHHcCCChHHHhCch--------hhcCHhHHHHHHHHHHhccC
Confidence 89999998 4443 4889998766 345456777777777665432221111 26999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEe-ccchhhhhcC
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV-GNHAELLHKG 680 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~-Gth~eLl~~~ 680 (695)
|.+|||||||++||.+|-..+.++|.+. + -|||+|||+-..+.. |++|+++++ ++.+. |++++..+..
T Consensus 458 pNvLiLDEPTNhLDi~s~~aLe~aL~~f-----~-Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~~ 527 (530)
T COG0488 458 PNLLLLDEPTNHLDIESLEALEEALLDF-----E-GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQK 527 (530)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHhC-----C-CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHhh
Confidence 9999999999999999999999999886 2 499999999999976 999999999 77776 8888877654
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=269.84 Aligned_cols=441 Identities=19% Similarity=0.215 Sum_probs=274.1
Q ss_pred hhHHHHHHHHHHHHhhhcccc---ccccccc-ccc---ccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhc
Q 005467 199 NIVLVKRLRETLYSALLFQDV---YFFDTEA-VGG---LTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW 271 (695)
Q Consensus 199 ~~~~~~~lr~~lf~~ll~~~~---~ff~~~~-~G~---l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw 271 (695)
..++....|.++-+|+.++-+ .||.-.+ -|. .=+++|+|+....+...+..+.+.-.++=++.+.+.+...+-
T Consensus 181 e~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~ 260 (728)
T KOG0064|consen 181 ESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSAT 260 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhc
Confidence 345566777777777665422 2332111 111 124688888877776655555554444433444443433222
Q ss_pred cch--hhHHHHHHHHHHHH---HHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcc
Q 005467 272 PLT--LSALLICSFLSIIV---SVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFI 346 (695)
Q Consensus 272 ~l~--li~l~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~ 346 (695)
..+ .+.++ ..++++.. +.+.++..++..+.....+.+...-...++|-++|..||..+.|.++.++...++...
T Consensus 261 s~g~~~~~~~-~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~q 339 (728)
T KOG0064|consen 261 SVGAAGITLA-GLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQ 339 (728)
T ss_pred cccccchhhh-hhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 221 11111 11222222 3333333444433444444556666778889999999999999888887766555432
Q ss_pred h---hhhccccccceeehhhhh-hhheehh-e-----eecceeeeccccC---hhh--hhhhhhhhh---heeeeeeecc
Q 005467 347 R---IRESMAYGLWNMSFITLY-RSTQVMA-V-----LLGGMSIMIGQVS---PEQ--LTKYVLYCE---WLIYATWRMV 408 (695)
Q Consensus 347 ~---~~~~~~~~~~~~~~~~l~-~~~~~~~-l-----~~g~~~v~~g~is---~G~--l~~~~~~~~---~l~~~~~~l~ 408 (695)
- .+...++... -.++. +.-.... + .+.+..+..|... .|. .-.|+.--. ...+++.+++
T Consensus 340 m~li~k~r~~YiMl---eqF~mKYvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlM 416 (728)
T KOG0064|consen 340 MNLIFKVRLWYIML---EQFVMKYTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLM 416 (728)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111111 01110 0000000 0 1111111112211 111 222332222 2224444555
Q ss_pred cchhHHHHhhcchhhHHHhhccC-------------Ccccccc------ccccc-----ccccceEEEEEEeeecCCCCc
Q 005467 409 DNLSSLLQSIGATEKVFQLIDLL-------------PSNQFLS------EGVKL-----QRLMGHVQFVNISFHYPSRPT 464 (695)
Q Consensus 409 ~~~~~~~~~~~a~~rl~~~l~~~-------------~~~~~~~------~~~~~-----~~~~~~I~f~nVsF~Y~~~~~ 464 (695)
..+.++.+-.+...|+++.++.- ++..+.. ++... ......|.++||-.--|+.
T Consensus 417 ssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~-- 494 (728)
T KOG0064|consen 417 SSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAG-- 494 (728)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCc--
Confidence 55566666667777887654210 1110000 00000 0122359999998887764
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
.-+...+||+|+||-.+.|.||+|||||+|.++|.|++|...|...+-- +.+|-|+||.|+.=-||.||
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~gtlRD 563 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGGTLRD 563 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcCcccc
Confidence 3488999999999999999999999999999999999999888776532 23599999999988899999
Q ss_pred cccccC------CcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccchhHHHHHHhhcCCcEEEEeccccc
Q 005467 545 NIMYGC------PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSA 617 (695)
Q Consensus 545 NI~~g~------~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQRIaIARAll~~p~ILILDEaTSa 617 (695)
-|-|-. +.+.+|+|+++.++.+.++ .|.+-..|+|....= +-||||+|||+++||.+|.+|+.-+|||+|||
T Consensus 564 QIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~-~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsA 642 (728)
T KOG0064|consen 564 QIIYPDSSEQMKRKGYTDQDLEAILDIVHLE-HILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSA 642 (728)
T ss_pred eeecCCcHHHHHhcCCCHHHHHHHHHHhhHH-HHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcc
Confidence 999862 1357899999999999997 566667788876653 48999999999999999999999999999999
Q ss_pred cCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEee
Q 005467 618 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 663 (695)
Q Consensus 618 LD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~ 663 (695)
+-.+-|..|.++.... |-+.|-||||+|..+.-...+-.|
T Consensus 643 vsidvE~~i~~~ak~~------gi~llsithrpslwk~h~~ll~~d 682 (728)
T KOG0064|consen 643 VSIDVEGKIFQAAKDA------GISLLSITHRPSLWKYHTHLLEFD 682 (728)
T ss_pred cccchHHHHHHHHHhc------CceEEEeecCccHHHHHHHHHhcc
Confidence 9999999999888765 689999999999987666665553
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-30 Score=245.11 Aligned_cols=190 Identities=25% Similarity=0.411 Sum_probs=159.8
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++.+|++..-+ +..++.++||++.+||.+-|+||+|||||||+++|+|+.+|++|+|+++|.++.... ++.++.+-
T Consensus 3 L~a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL 78 (209)
T ss_pred chhhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHH
Confidence 34556665543 346999999999999999999999999999999999999999999999999998754 44578888
Q ss_pred cccCCceeee-eeccccccccCC--cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~--~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
|+.-.+-+=. -|+.||++|... .+.+++.+++|++.+++.++ +.+|-+ +||-||+.|+||||-++..+
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp~~--------~LSAGQqRRvAlArL~ls~~ 149 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLPVG--------QLSAGQQRRVALARLWLSPA 149 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccchh--------hcchhHHHHHHHHHHHcCCC
Confidence 8888777664 699999998742 12457899999999999886 456766 59999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 655 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~ 655 (695)
|+.||||||++||.+.++..-+.+.... .+|-.||..||....+..
T Consensus 150 pLWiLDEP~taLDk~g~a~l~~l~~~H~---~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 150 PLWILDEPFTALDKEGVALLTALMAAHA---AQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CceeecCcccccCHHHHHHHHHHHHHHh---cCCCEEEEecCCccCCCc
Confidence 9999999999999999998877776654 346789999998876543
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-30 Score=267.43 Aligned_cols=192 Identities=27% Similarity=0.394 Sum_probs=136.5
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHH-----h-hhc----CCCc-----------eEEEcCccCCcchhHHH
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-----R-LYE----PSDG-----------QIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~-----r-ly~----p~~G-----------~I~idG~di~~i~~~~l 524 (695)
..|+|||++||.|+.++|.|+||||||||++-++ + +.. |..+ -|.+|..++..-. .+.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~-rs~ 87 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTP-RSN 87 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCC-CCc
Confidence 4799999999999999999999999999998653 2 222 3333 2566666654321 111
Q ss_pred Hhh---------------------------hccccCCce-eeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCC
Q 005467 525 REK---------------------------IGFVGQEPQ-LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLP 576 (695)
Q Consensus 525 R~~---------------------------I~~V~Qd~~-LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP 576 (695)
... +.|..++.. +.+.|+.||+.|.. .....++..++++..
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~-~~~~~~~~~~~L~~v---------- 156 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFE-NIPKIARKLQTLCDV---------- 156 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHH-hhhhHHHHHHHHHHc----------
Confidence 111 333444333 23446666665541 111112222233333
Q ss_pred CCccc-cccc--cccCCccchhHHHHHHhhcC---CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeec
Q 005467 577 CGYET-LVDD--DLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 650 (695)
Q Consensus 577 ~G~dT-~vge--~~LSGGQkQRIaIARAll~~---p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl 650 (695)
|++. ..+. ..||||||||++|||||.++ |+++||||||++||+++.+.+.+.|.++.+ +|.|+|+|+|++
T Consensus 157 -gL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~---~g~tvIiitH~~ 232 (261)
T cd03271 157 -GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD---KGNTVVVIEHNL 232 (261)
T ss_pred -CCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCH
Confidence 3332 2343 38999999999999999996 799999999999999999999999988753 368999999999
Q ss_pred ccccccCeEEEe------eCCeEEEeccc
Q 005467 651 STIKAVDRIVVI------DDGRIIEVGNH 673 (695)
Q Consensus 651 sti~~aD~IvvL------~~G~Ive~Gth 673 (695)
..++.||+|++| ++|+|+++|++
T Consensus 233 ~~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 233 DVIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HHHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 999999999999 89999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-29 Score=235.31 Aligned_cols=230 Identities=25% Similarity=0.393 Sum_probs=172.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC-----ccCCcchhHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG-----FPLTDLDIRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG-----~di~~i~~~~ 523 (695)
-++++++|..|.+. .--+||||++-|||+.+|||+||||||||+++|.+=..|+.|+|.++- .|+-..+..+
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 37889999999754 468999999999999999999999999999999999999999999875 3444444444
Q ss_pred HHh----hhccccCCce--e-eeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccch
Q 005467 524 LRE----KIGFVGQEPQ--L-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQ 594 (695)
Q Consensus 524 lR~----~I~~V~Qd~~--L-F~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQ 594 (695)
-|. -=|+|.|+|- | ..-|--.||- .+.-+.-++=.-- -.+.+.+|+++..-..+ .+.+ +.+|||.+|
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiG--ERlma~G~RHYG~-iR~~a~~WL~~VEI~~~-RiDD~PrtFSGGMqQ 158 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIG--ERLMAIGARHYGN-IRAEAQDWLEEVEIDLD-RIDDLPRTFSGGMQQ 158 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccc--hhHHhhhhhhhhh-HHHHHHHHHHhcccCcc-cccCcccccchHHHH
Confidence 333 4599999984 1 1112233331 0000000000000 12334566665443332 2333 489999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth 673 (695)
|+-|||-|...|+++++||||.+||..-.+.+.+.++.+-.+ -+-.+++|||++...+- +||.+||++|+++|.|--
T Consensus 159 RLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~--l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLT 236 (258)
T COG4107 159 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE--LGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLT 236 (258)
T ss_pred HHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHh--cCceEEEEechhHHHHHhhhcceeecCCCEeccccc
Confidence 999999999999999999999999999999998888877554 35799999999999885 999999999999999988
Q ss_pred hhhhhc-CchhHHHH
Q 005467 674 AELLHK-GRLYAKLV 687 (695)
Q Consensus 674 ~eLl~~-~g~Y~~l~ 687 (695)
+..+.. ...|.+|.
T Consensus 237 DrvLDDP~hPYTQLL 251 (258)
T COG4107 237 DRVLDDPHHPYTQLL 251 (258)
T ss_pred cccccCCCCchHHHH
Confidence 888875 56676654
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=253.28 Aligned_cols=164 Identities=23% Similarity=0.317 Sum_probs=131.4
Q ss_pred eeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC---------ceEEEcCccCCcchhHHHHhhhccccCCceeee
Q 005467 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---------GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 539 (695)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~---------G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~ 539 (695)
++++|++++| +++|+||||||||||++.|.++..|.. |++.++|.+... ...+++|++|+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-
Confidence 5789999999 999999999999999999999987653 468888887654 22467899999999877
Q ss_pred eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh----cCCcEEEEeccc
Q 005467 540 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEAT 615 (695)
Q Consensus 540 ~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll----~~p~ILILDEaT 615 (695)
|+. . .++++.++++. ++-.++.+ ..||||||||++||||+. ++|++++|||||
T Consensus 89 --------~~~-~--~~~~~~~~l~~----------~~~~~~~~--~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 89 --------YSI-I--SQGDVSEIIEA----------PGKKVQRL--SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred --------eeE-E--ehhhHHHHHhC----------CCccccch--hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 331 0 13455555554 11122221 369999999999999986 577999999999
Q ss_pred cccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 616 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 616 SaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
++||+++...+.+.|+++.+ +.|+|+|||+++.++.||+++.+..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~----~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 146 AALDDANVERFARLLKEFSK----ETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred ccCCHHHHHHHHHHHHHhcc----CCEEEEEECCHHHHhhcceEEEEEe
Confidence 99999999999999998743 4899999999999999999999863
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-28 Score=230.87 Aligned_cols=203 Identities=30% Similarity=0.446 Sum_probs=146.4
Q ss_pred eEEEEEEeeecCCC----CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCc----cCCcch
Q 005467 449 HVQFVNISFHYPSR----PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF----PLTDLD 520 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~----~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~----di~~i~ 520 (695)
.+..+||+.+|.-+ -.-||++|+||+++.||++++-||||||||||++.|-+=|.|++|+|.+.-. |+..-.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 36788888776321 1137999999999999999999999999999999999999999999998643 333332
Q ss_pred hH----HHHhhhccccCCceeeee-----eccccc-cccCCcCCCchhHHHHHHHhhHhHhHh--cCCCCcccccccccc
Q 005467 521 IR----WLREKIGFVGQEPQLLQM-----DIKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFIL--SLPCGYETLVDDDLL 588 (695)
Q Consensus 521 ~~----~lR~~I~~V~Qd~~LF~~-----TI~eNI-~~g~~~~~~~eei~~A~~~a~l~~fI~--~LP~G~dT~vge~~L 588 (695)
+. -.|+.||||+|---.... -++|-+ ..| ...| .|-.+ +.+... .+|+.+.. +....+
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~g----v~~~---~a~~~--a~~Ll~rLnlperLW~-LaPaTF 153 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARG----VPRE---VARAK--AADLLTRLNLPERLWS-LAPATF 153 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcC----CCHH---HHHHH--HHHHHHHcCCCHHHhc-CCCccc
Confidence 22 236679999995432221 112221 112 1111 11111 112222 34544332 122479
Q ss_pred CCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeC
Q 005467 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 664 (695)
Q Consensus 589 SGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~ 664 (695)
||||+||+-|||.++-|-|||+|||||++||+.+.+.|.+.|.+.+ .+|..++=|=|+-+.-+. |||++-|..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~K---a~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAK---ARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHH---hcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999999998875 468899999999887654 999987753
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-28 Score=250.01 Aligned_cols=191 Identities=20% Similarity=0.184 Sum_probs=141.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEee-cCcEEEEEeecCCChhhHHHHHH-hhhcCCCceEEEcCccCCcchhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIE-ANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~-~Ge~vAIVG~SGSGKSTLl~LL~-rly~p~~G~I~idG~di~~i~~~~lR~ 526 (695)
.|+++|+. +|.++ ++|+|+.. +|++++|+||||||||||+++|. .+|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 68999998 87532 47778754 59999999999999999999999 5777777777654 2223344445566
Q ss_pred hhccccCCceeeeeeccccccccCCcCCCchhHHHHH--HHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA--KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~--~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
.|++++|++ +....++++. ..+.++..+.. +..++.++++.-+ .+||||||||++||||+..
T Consensus 77 ~v~~~f~~~----~~~~~~~r~~---gl~~~~~~~~~~l~~g~l~~~l~~~~---------~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 77 EVSFTFQLG----GKKYRVERSR---GLDYDQFTRIVLLPQGEFDRFLARPV---------STLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEEEC----CeEEEEEEec---CCCHHHHHHhhhhhhcchHHHhcCCc---------cccCHHHHHHHHHHHHHHh
Confidence 788888887 3333444443 34444444432 2222333332211 3799999999999999974
Q ss_pred ----------CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCe
Q 005467 605 ----------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 666 (695)
Q Consensus 605 ----------~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~ 666 (695)
+|+++||||||++||+++...+.+.|.++.+ +++|+|+|||+++.+.. ||+|++|++|-
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~---~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT---ENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 6789999999999999999999999988743 36899999999998765 89999999985
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-28 Score=250.14 Aligned_cols=190 Identities=23% Similarity=0.301 Sum_probs=134.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh----------------hcCCCc-----
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL----------------YEPSDG----- 507 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl----------------y~p~~G----- 507 (695)
+|+++|- .+|.+ ..++++++ |++++|+||||||||||+++|.++ ..+.+|
T Consensus 3 ~i~~~nf-ksy~~---~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGF-KSYKD---QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCc-cCccc---CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 3556652 23643 35788887 889999999999999999999844 344455
Q ss_pred ---eEEEcCccCCc-c--hhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhH--hcCCCCc
Q 005467 508 ---QIYIDGFPLTD-L--DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI--LSLPCGY 579 (695)
Q Consensus 508 ---~I~idG~di~~-i--~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI--~~LP~G~ 579 (695)
+|.+++.+-.. + +...+++.+++++|+..+ . +..++.+++..+++.+++.+.- ..+|+|.
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l-----------~-~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~ 141 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFL-----------D-KKNVTKNDVMNLLESAGFSRSNPYYIVPQGK 141 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEE-----------C-CeEcCHHHHHHHHHHcCCCCCCCcEEEEcCc
Confidence 55555432110 0 112344556666655443 2 2346678888888887765421 1134443
Q ss_pred cccc-------cc--cccCCccchhHHHHHHhh----cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEE
Q 005467 580 ETLV-------DD--DLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVI 646 (695)
Q Consensus 580 dT~v-------ge--~~LSGGQkQRIaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiI 646 (695)
.+.+ ++ ..||||||||++||||++ ++|+++||||||++||+++.+.+.+.|.++. ++.|+|++
T Consensus 142 i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~----~~~~ii~~ 217 (243)
T cd03272 142 INSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELS----DGAQFITT 217 (243)
T ss_pred hHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHh----CCCEEEEE
Confidence 3322 22 379999999999999996 4689999999999999999999999998873 35789999
Q ss_pred eeecccccccCeEEEee
Q 005467 647 AHRLSTIKAVDRIVVID 663 (695)
Q Consensus 647 aHrlsti~~aD~IvvL~ 663 (695)
+|+.+..+.||+|++|+
T Consensus 218 ~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 218 TFRPELLEVADKFYGVK 234 (243)
T ss_pred ecCHHHHhhCCEEEEEE
Confidence 99988888899999996
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-28 Score=288.54 Aligned_cols=223 Identities=21% Similarity=0.378 Sum_probs=191.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc-hhHHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL-DIRWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i-~~~~lR~~ 527 (695)
.+..+|++..|+.+. .+.+++||.|+|||+.++-|++||||||++|++.|..+|++|++.++|.++..- +.+..|++
T Consensus 564 ~~~~~~L~k~y~~~~--~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKD--GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred eEEEcceeeeecchh--hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 578999999998653 299999999999999999999999999999999999999999999999999754 55678999
Q ss_pred hccccCCceeee-eeccccccccC-CcCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGC-PKDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~-~~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
+||+||+..|+. -|.||.+.+-. -..... +.+.+.++..++.++... + -+.+|||+|.||++|-|
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~-------~--~~~ySgG~kRkLs~aia 712 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK-------Q--VRTYSGGNKRRLSFAIA 712 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc-------c--hhhCCCcchhhHHHHHH
Confidence 999999999996 59999997542 122232 235556666666665443 1 24799999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcC
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
++.+|++++|||||+++|+.+++.+.+.+++.+++ ++.+|+.||.++..+. |||+.+|-+|++.--|+.++|-.+-
T Consensus 713 lig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~---g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 713 LIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN---GKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRY 789 (885)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc---CCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhc
Confidence 99999999999999999999999999999999754 5699999999999976 9999999999999999999998876
Q ss_pred chhHH
Q 005467 681 RLYAK 685 (695)
Q Consensus 681 g~Y~~ 685 (695)
|.++.
T Consensus 790 G~gy~ 794 (885)
T KOG0059|consen 790 GSGYT 794 (885)
T ss_pred CCcEE
Confidence 66554
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-26 Score=241.10 Aligned_cols=183 Identities=17% Similarity=0.283 Sum_probs=135.1
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCC-CceEEEcCc-cCCcch--hHHHHhhhccccCCcee---------e-eeecc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGF-PLTDLD--IRWLREKIGFVGQEPQL---------L-QMDIK 543 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~-~G~I~idG~-di~~i~--~~~lR~~I~~V~Qd~~L---------F-~~TI~ 543 (695)
..+++||||||||||||++.|.++..|+ .|+++..|. |+-... .+..+..|++++|++.. . .-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6689999999999999999999999886 568988886 432111 11224589999998521 1 46889
Q ss_pred ccccccCC-------cCCCchhHHHHHHHhhHh----HhHhcCCCC-cc------ccccc--cccCCccchhHHHHHHhh
Q 005467 544 SNIMYGCP-------KDVKNEDIEWAAKQAYVH----EFILSLPCG-YE------TLVDD--DLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 544 eNI~~g~~-------~~~~~eei~~A~~~a~l~----~fI~~LP~G-~d------T~vge--~~LSGGQkQRIaIARAll 603 (695)
+||..+.. .....+++.++++.+++. .|+ +|+| .+ ..... ..||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~--i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~ 182 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFL--IMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILA 182 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEE--EeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHH
Confidence 88876521 112345677777777764 111 1111 00 11111 379999999999999997
Q ss_pred ----cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEee--CCe
Q 005467 604 ----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID--DGR 666 (695)
Q Consensus 604 ----~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~--~G~ 666 (695)
++|++++|||||++||+++.+.+.+.|.++. +|.|+|+||||.+.++.||+++-+. ||.
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~----~g~~ii~iSH~~~~~~~~d~v~~~~~~~~~ 247 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF----KGSQFIVVSLKEGMFNNANVLFRTRFVDGT 247 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc----CCCEEEEEECCHHHHHhCCEEEEEEeeCCE
Confidence 6889999999999999999999999998873 3589999999999999999998764 553
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-27 Score=237.69 Aligned_cols=185 Identities=23% Similarity=0.247 Sum_probs=136.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH-hh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-EK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR-~~ 527 (695)
.|+++|.- +|.+ ..+++++++ ++++|+|||||||||++++|. +++|.+.. ..| ++
T Consensus 5 ~l~l~nfk-~~~~---~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYAG---EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKK 60 (212)
T ss_pred EEEEECcc-cCCC---CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----Hhhhhh
Confidence 57788765 7754 359999988 899999999999999999997 34554432 233 67
Q ss_pred hccccCCceeeee-eccccccccCCcCCCchh-----HHHHHHH----hhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 528 IGFVGQEPQLLQM-DIKSNIMYGCPKDVKNED-----IEWAAKQ----AYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 528 I~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~ee-----i~~A~~~----a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
+++++|+..++.. |.++++.+-.. ....+. +...... .+--..+.+||++.++.++ .||||||||++
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~--~lS~G~~~r~~ 137 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQE-IIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS--NLSGGEKTLSS 137 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEe-CCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh--hcCHHHHHHHH
Confidence 9999999877654 77777766521 100000 0000000 0111134467887777653 69999999999
Q ss_pred HHHHhhc----CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 598 IARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 598 IARAll~----~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
||||+.. +|++++|||||++||+++...+.+.+.++. ++.|+|+|||+.+..+.||+|++|..
T Consensus 138 la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~----~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 138 LALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT----KNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc----CCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 9999963 589999999999999999999999999873 35799999999988888999999964
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=265.24 Aligned_cols=222 Identities=28% Similarity=0.385 Sum_probs=151.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHH-----hhhc----CCCceE----------
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-----RLYE----PSDGQI---------- 509 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~-----rly~----p~~G~I---------- 509 (695)
.|+++|++. ..|+|+||+|++||+++|+|+||||||||++-++ +.|. +..+..
T Consensus 614 ~L~v~~l~~--------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 685 (943)
T PRK00349 614 FLKLKGARE--------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDK 685 (943)
T ss_pred eEEecCCcc--------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCc
Confidence 477888751 2599999999999999999999999999998654 2222 222333
Q ss_pred --EEcCccCC--------cch--hHHHHhh---------hccccCCceeee-----------eeccccccccCCcCCC--
Q 005467 510 --YIDGFPLT--------DLD--IRWLREK---------IGFVGQEPQLLQ-----------MDIKSNIMYGCPKDVK-- 555 (695)
Q Consensus 510 --~idG~di~--------~i~--~~~lR~~---------I~~V~Qd~~LF~-----------~TI~eNI~~g~~~~~~-- 555 (695)
.||-.++. .+. .+.+|+. .||.++.....+ |+|..|+.|- + ++.
T Consensus 686 ~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~-~-~~~~~ 763 (943)
T PRK00349 686 VIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFL-P-DVYVP 763 (943)
T ss_pred eEEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccC-C-Ccccc
Confidence 33333322 010 1233333 455555533332 5677666653 1 100
Q ss_pred ----------c---------hhHHHHH--HHhhHhHhHhcCCC-----------Cccc-cccc--cccCCccchhHHHHH
Q 005467 556 ----------N---------EDIEWAA--KQAYVHEFILSLPC-----------GYET-LVDD--DLLSGGQKQRIAIAR 600 (695)
Q Consensus 556 ----------~---------eei~~A~--~~a~l~~fI~~LP~-----------G~dT-~vge--~~LSGGQkQRIaIAR 600 (695)
+ ..|.+++ ....+.+|...+|. |++. .++. ..||||||||++|||
T Consensus 764 C~~C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAr 843 (943)
T PRK00349 764 CDVCKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAK 843 (943)
T ss_pred CccccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHH
Confidence 0 0111111 11111222222222 4433 2344 389999999999999
Q ss_pred HhhcCC---cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe------eCCeEEEec
Q 005467 601 AILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVG 671 (695)
Q Consensus 601 All~~p---~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL------~~G~Ive~G 671 (695)
||+++| +++||||||++||.++.+.+.+.|+++.+ +|+|+|+|+|++..++.||+|++| ++|+|++.|
T Consensus 844 aL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~---~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~G 920 (943)
T PRK00349 844 ELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD---KGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATG 920 (943)
T ss_pred HHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeC
Confidence 999999 99999999999999999999999998753 468999999999999999999999 799999999
Q ss_pred cchhhhhcCchh
Q 005467 672 NHAELLHKGRLY 683 (695)
Q Consensus 672 th~eLl~~~g~Y 683 (695)
+++|+.+....|
T Consensus 921 t~~el~~~~~s~ 932 (943)
T PRK00349 921 TPEEVAKVEASY 932 (943)
T ss_pred CHHHHHhCcccH
Confidence 999999766444
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=245.46 Aligned_cols=217 Identities=25% Similarity=0.433 Sum_probs=176.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch-hHHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~-~~~lR~~ 527 (695)
.++++|++.. ..++|+||++.+||+++|.|--|||+|-++..|.|..++.+|+|.+||++++--+ .+..+.-
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 4678887642 2588999999999999999999999999999999999999999999999886665 5588889
Q ss_pred hccccCCce---ee-eeeccccccccCCcCCCch-hHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccchhHHHHHH
Q 005467 528 IGFVGQEPQ---LL-QMDIKSNIMYGCPKDVKNE-DIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARA 601 (695)
Q Consensus 528 I~~V~Qd~~---LF-~~TI~eNI~~g~~~~~~~e-ei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQRIaIARA 601 (695)
|+|||.|-. || ..||++||.+......... -+....+.+-+.+++..|--.-...--. .+||||-.|++.|||.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarw 415 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARW 415 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHH
Confidence 999998754 44 6799999988721111111 2455667777778888764322111111 3899999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchh
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~e 675 (695)
|..+|++|||||||-++|--+.++|.+.|+++.. +|+++|+||-.+..+- .||||+||.+|+|+..=+.++
T Consensus 416 L~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~---~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 416 LATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA---EGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HhcCCCEEEECCCCcCcccchHHHHHHHHHHHHH---CCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999999999999999999864 5899999999998875 799999999999997544444
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-26 Score=228.05 Aligned_cols=165 Identities=22% Similarity=0.344 Sum_probs=128.3
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHH----hhhcCCCceEEEcCccCCcchhHHHHhhhccccCCc-----eeee-ee
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLL----RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP-----QLLQ-MD 541 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~----rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~-----~LF~-~T 541 (695)
++++.+| +++|+||||||||||++.|. |.-.|.+|.+.-+. ..+.....+..|++++|++ .++. -|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~---~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDP---KLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchH---HHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 4556677 99999999999999999995 88888888776222 2223334566899999998 4443 28
Q ss_pred ccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchh------HHHHHHhhcCCcEEEEeccc
Q 005467 542 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQR------IAIARAILRDPAILLLDEAT 615 (695)
Q Consensus 542 I~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQR------IaIARAll~~p~ILILDEaT 615 (695)
+.||+.++ + ++++.+.+ +..| ..|||||+|| ++||||+..+|++++|||||
T Consensus 93 ~~~~~~~~-~----~~~~~~~~---------~~~~---------~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~ 149 (204)
T cd03240 93 ILENVIFC-H----QGESNWPL---------LDMR---------GRCSGGEKVLASLIIRLALAETFGSNCGILALDEPT 149 (204)
T ss_pred Hhhceeee-c----hHHHHHHH---------hcCc---------cccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCc
Confidence 99999876 2 33333222 1111 3799999996 79999999999999999999
Q ss_pred cccCcccch-hhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCC
Q 005467 616 SALDSESEH-YVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG 665 (695)
Q Consensus 616 SaLD~~tE~-~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G 665 (695)
++||+++.. .+.+.|.+..+. .++|+|+|||+++.+..||+|++|++.
T Consensus 150 ~~LD~~~~~~~l~~~l~~~~~~--~~~~iiiitH~~~~~~~~d~i~~l~~~ 198 (204)
T cd03240 150 TNLDEENIEESLAEIIEERKSQ--KNFQLIVITHDEELVDAADHIYRVEKD 198 (204)
T ss_pred cccCHHHHHHHHHHHHHHHHhc--cCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence 999999998 999999887431 257999999999998899999999753
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-26 Score=218.03 Aligned_cols=209 Identities=23% Similarity=0.389 Sum_probs=172.1
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++++||+.+ .-|-.+|.++..||.+=+|||+|||||||+.-++|+. |-+|+|.++|.|+..+...++-++=+
T Consensus 4 ~qln~v~~~-------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeecccccc-------ccccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 567777642 2578899999999999999999999999999999998 68999999999999999999999989
Q ss_pred cccCCc-eeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhc--
Q 005467 530 FVGQEP-QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR-- 604 (695)
Q Consensus 530 ~V~Qd~-~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~-- 604 (695)
|..|+. ..|..-|..-+.+..|...--+++.+.|++-++ +-.+|. ..|||||.||+-+|-..+.
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l-----------~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcc-----------cchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 888755 589999999988874321112334444444433 334443 3799999999999988875
Q ss_pred ---C--CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeec-ccccccCeEEEeeCCeEEEeccchhhhh
Q 005467 605 ---D--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STIKAVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 605 ---~--p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl-sti~~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
| .++|+||||.++||...+...-..|.++. ..|+|||+-.|+| .|+++||++..+..|++..+|..+|.+.
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c---~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC---QQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHH---hCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 3 47999999999999999988888887774 4689999999999 5689999999999999999999999986
Q ss_pred cC
Q 005467 679 KG 680 (695)
Q Consensus 679 ~~ 680 (695)
.+
T Consensus 222 ~~ 223 (248)
T COG4138 222 PP 223 (248)
T ss_pred hH
Confidence 43
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-26 Score=248.62 Aligned_cols=194 Identities=26% Similarity=0.392 Sum_probs=158.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|.|+||+|+|++++ .+++++||-|.+++++|+|||+|+|||||+|++.|...|+.|.|.-.-.. ++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL 455 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence 589999999998653 69999999999999999999999999999999999999999999765322 22
Q ss_pred ccccC---CceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 529 GFVGQ---EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 529 ~~V~Q---d~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
++-.| |--..+.|.-||.+=.-++.-..|++...+...|+.......|- ++||+|||.|++.||..+++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~--------~~LS~Gqr~rVlFa~l~~kq 527 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM--------SQLSDGQRRRVLFARLAVKQ 527 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch--------hhcccccchhHHHHHHHhcC
Confidence 33333 22345677777775331112445777788899888755554443 37999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEE
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE 669 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive 669 (695)
|.||+|||||++||.++-....++|.+. .-+|++|||+.-.|.+ |++|.+.+||.+..
T Consensus 528 P~lLlLDEPtnhLDi~tid~laeaiNe~------~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 528 PHLLLLDEPTNHLDIETIDALAEAINEF------PGGVVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred CcEEEecCCCcCCCchhHHHHHHHHhcc------CCceeeeechhhHHHHHHHHhHhhccCceee
Confidence 9999999999999999999999999876 2499999999999976 99999999998864
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-25 Score=275.59 Aligned_cols=212 Identities=22% Similarity=0.363 Sum_probs=148.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHH---------HHHhhhcCCC----ce----EEE
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN---------LLLRLYEPSD----GQ----IYI 511 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~---------LL~rly~p~~----G~----I~i 511 (695)
.++++|++. ..|+|+||+|++||+++|+|+||||||||++ +|.|...+.. +. |.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 478888751 3799999999999999999999999999999 4444322211 12 455
Q ss_pred cCccCCcch----------hHHHH---------hhhcc-----ccCC------c--------------------------
Q 005467 512 DGFPLTDLD----------IRWLR---------EKIGF-----VGQE------P-------------------------- 535 (695)
Q Consensus 512 dG~di~~i~----------~~~lR---------~~I~~-----V~Qd------~-------------------------- 535 (695)
|-.++..-. .+.+| +..|+ .+|. .
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 655543211 12444 23332 2221 0
Q ss_pred ------eeee-eeccccccccCCcCC-----CchhHHHHHHHhhHhHhHhcCCCCcccc-ccc--cccCCccchhHHHHH
Q 005467 536 ------QLLQ-MDIKSNIMYGCPKDV-----KNEDIEWAAKQAYVHEFILSLPCGYETL-VDD--DLLSGGQKQRIAIAR 600 (695)
Q Consensus 536 ------~LF~-~TI~eNI~~g~~~~~-----~~eei~~A~~~a~l~~fI~~LP~G~dT~-vge--~~LSGGQkQRIaIAR 600 (695)
..+. .||.||+.|+. .++ +.+++.+.++ .++.+ |++.. .+. ..||||||||++|||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv-~ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAr 822 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTA-YEAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAY 822 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCH-HHHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHH
Confidence 0111 25666666552 111 1122222221 22222 45443 454 389999999999999
Q ss_pred Hhh---cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEee------CCeEEEec
Q 005467 601 AIL---RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID------DGRIIEVG 671 (695)
Q Consensus 601 All---~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~------~G~Ive~G 671 (695)
||+ ++|++|||||||++||..+.+.+.+.|+++.+ +|.|+|+|+|++..++.||+|++|+ +|++++.|
T Consensus 823 aL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~---~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~G 899 (1809)
T PRK00635 823 ELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH---QGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASC 899 (1809)
T ss_pred HHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeC
Confidence 998 59999999999999999999999999998753 4789999999999998899999996 79999999
Q ss_pred cchhhhhcC
Q 005467 672 NHAELLHKG 680 (695)
Q Consensus 672 th~eLl~~~ 680 (695)
+++++....
T Consensus 900 tpeel~~~~ 908 (1809)
T PRK00635 900 SPEELIHLH 908 (1809)
T ss_pred CHHHHHhcc
Confidence 999998644
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-25 Score=265.03 Aligned_cols=212 Identities=28% Similarity=0.489 Sum_probs=169.9
Q ss_pred EEEEEeeecCCC-CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc--CCCceEEEcCccCCcchhHHHHhh
Q 005467 451 QFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--PSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 451 ~f~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~--p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
-.+|+.|.-+.+ ...+.|+|||=-++||..+|++|+||||||||++.|+|=-. ..+|+|+|||.+..+ +.++|.
T Consensus 789 ~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~ 865 (1391)
T KOG0065|consen 789 YWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARV 865 (1391)
T ss_pred EEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccc
Confidence 344444443211 23579999999999999999999999999999999998643 357999999998755 789999
Q ss_pred hccccCCc-eeeeeeccccccccC----CcCCCchh----HHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhH
Q 005467 528 IGFVGQEP-QLLQMDIKSNIMYGC----PKDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRI 596 (695)
Q Consensus 528 I~~V~Qd~-~LF~~TI~eNI~~g~----~~~~~~ee----i~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRI 596 (695)
+|||.|+. |+=.-||||-++|.+ +.+++++| ++++.+..++.++ -|..||. ..||..||.|+
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrL 938 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRL 938 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhcee
Confidence 99999855 676689999999874 33444433 3445555544433 3445665 48999999999
Q ss_pred HHHHHhhcCC-cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccc--ccccCeEEEeeC-CeEEEecc
Q 005467 597 AIARAILRDP-AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--IKAVDRIVVIDD-GRIIEVGN 672 (695)
Q Consensus 597 aIARAll~~p-~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst--i~~aD~IvvL~~-G~Ive~Gt 672 (695)
.||=-|..|| .||.||||||+||+++...|++.++++. ..|+||+..=|.+|. .+..|+++.|++ |+.|..|+
T Consensus 939 TIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla---~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~ 1015 (1391)
T KOG0065|consen 939 TIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLA---DTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGP 1015 (1391)
T ss_pred eEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHH---hcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecC
Confidence 9999999999 9999999999999999999999999985 368999999999987 488999999984 88998876
Q ss_pred chh
Q 005467 673 HAE 675 (695)
Q Consensus 673 h~e 675 (695)
..|
T Consensus 1016 lG~ 1018 (1391)
T KOG0065|consen 1016 LGE 1018 (1391)
T ss_pred ccc
Confidence 443
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-24 Score=225.63 Aligned_cols=183 Identities=19% Similarity=0.188 Sum_probs=133.1
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc-C-C-----cchhHHHHhhhccccCCc--eeeeeeccccc-cc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-L-T-----DLDIRWLREKIGFVGQEP--QLLQMDIKSNI-MY 548 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d-i-~-----~i~~~~lR~~I~~V~Qd~--~LF~~TI~eNI-~~ 548 (695)
..++|+||+|||||||+..|.++..+..|+++.++.+ + . ..+.....-.+.+..|++ .++..+++++- .|
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998888888765421 1 0 111122333455555542 45666666543 22
Q ss_pred c-CCcCCCchhHHHHHHHhhHhHhHhc--CCCCccccccc-----------cccCCccchhHHHHHHhhc----CCcEEE
Q 005467 549 G-CPKDVKNEDIEWAAKQAYVHEFILS--LPCGYETLVDD-----------DLLSGGQKQRIAIARAILR----DPAILL 610 (695)
Q Consensus 549 g-~~~~~~~eei~~A~~~a~l~~fI~~--LP~G~dT~vge-----------~~LSGGQkQRIaIARAll~----~p~ILI 610 (695)
. +....+.+++.+.++.++++.+... .|+|-=+.+.+ ..||||||||++||||++. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 2 1234677888888899988533211 23333222211 3799999999999999986 499999
Q ss_pred EeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 611 LDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 611 LDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
|||||++||.++...+.+.|.+..+ +|.|+|+|||+.+.++.||++++|.+
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~---~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAG---PNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhcc---CCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999988743 36899999999999999999999974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.9e-24 Score=227.69 Aligned_cols=218 Identities=26% Similarity=0.476 Sum_probs=176.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC-CcchhHHHHh-
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL-TDLDIRWLRE- 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di-~~i~~~~lR~- 526 (695)
-++++|++..-.. +.+.++||||+|++||+++|.|-+|-|-+-|+.+|+|+.+|.+|+|+++|.|+ ..++...+|+
T Consensus 257 vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 257 VLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred EEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 4799999986532 24689999999999999999999999999999999999999999999999997 6678777765
Q ss_pred hhccccCCce----eeeeeccccccccCCcC---CCchhHHHHHHHhhHhHhHhcCCCCccccc-cc----cccCCccch
Q 005467 527 KIGFVGQEPQ----LLQMDIKSNIMYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCGYETLV-DD----DLLSGGQKQ 594 (695)
Q Consensus 527 ~I~~V~Qd~~----LF~~TI~eNI~~g~~~~---~~~eei~~A~~~a~l~~fI~~LP~G~dT~v-ge----~~LSGGQkQ 594 (695)
-+||||.|.+ ..+.|+.||+.+++... .+.--+.+-.-...+.+.|++ ||-.- |+ ++||||+.|
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~----fdVr~~~~~~~a~~LSGGNqQ 410 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEE----FDVRAPSPDAPARSLSGGNQQ 410 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHH----cCccCCCCCcchhhcCCccee
Confidence 5999999985 56789999999884211 111111111112222333443 33332 22 389999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth 673 (695)
|+-+||-+.++|++||..+||-+||..+.+.|.+.|.+.+. +|+.|++|+-.|..+- -||||.||.+|+|+.....
T Consensus 411 K~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~---~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~ 487 (501)
T COG3845 411 KLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD---AGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPP 487 (501)
T ss_pred hhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh---cCCEEEEEehhHHHHHHhhheeeeeeCCceeccccc
Confidence 99999999999999999999999999999999999998864 5899999999999975 5999999999999988877
Q ss_pred hh
Q 005467 674 AE 675 (695)
Q Consensus 674 ~e 675 (695)
+|
T Consensus 488 ~~ 489 (501)
T COG3845 488 EE 489 (501)
T ss_pred cc
Confidence 76
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-23 Score=245.34 Aligned_cols=217 Identities=29% Similarity=0.431 Sum_probs=144.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHH------hhhc----C-----------CCc
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL------RLYE----P-----------SDG 507 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~------rly~----p-----------~~G 507 (695)
.++++|++. ..|+|+||+|++|++++|+|+||||||||++=.+ ++.. | -.-
T Consensus 612 ~l~l~~~~~--------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (924)
T TIGR00630 612 FLTLKGARE--------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDK 683 (924)
T ss_pred eEEEEeCcc--------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCc
Confidence 478888862 2599999999999999999999999999998222 1121 1 112
Q ss_pred eEEEcCccCCcch----------hHHHHhhhccccC------Cceeeeeec--------------ccccccc------CC
Q 005467 508 QIYIDGFPLTDLD----------IRWLREKIGFVGQ------EPQLLQMDI--------------KSNIMYG------CP 551 (695)
Q Consensus 508 ~I~idG~di~~i~----------~~~lR~~I~~V~Q------d~~LF~~TI--------------~eNI~~g------~~ 551 (695)
-|.||-.++..-+ .+.+|+..+=.++ .+-.|+--. .-+..|- |+
T Consensus 684 ~v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~ 763 (924)
T TIGR00630 684 VIHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCE 763 (924)
T ss_pred eEEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCC
Confidence 3667766654211 2345666654443 233343211 1111110 00
Q ss_pred ----cCCCch---------hHHHHH--HHhhHhHhHhcCCC-----------Cccc-cccc--cccCCccchhHHHHHHh
Q 005467 552 ----KDVKNE---------DIEWAA--KQAYVHEFILSLPC-----------GYET-LVDD--DLLSGGQKQRIAIARAI 602 (695)
Q Consensus 552 ----~~~~~e---------ei~~A~--~~a~l~~fI~~LP~-----------G~dT-~vge--~~LSGGQkQRIaIARAl 602 (695)
....+| .|-+++ ....+.+|...+|. |++. .++. ..||||||||++|||||
T Consensus 764 ~C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL 843 (924)
T TIGR00630 764 VCKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKEL 843 (924)
T ss_pred CcCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHH
Confidence 000000 011110 01111223333321 4433 2454 38999999999999999
Q ss_pred hc---CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe------eCCeEEEeccc
Q 005467 603 LR---DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNH 673 (695)
Q Consensus 603 l~---~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL------~~G~Ive~Gth 673 (695)
.+ +|+++||||||++||.++...+.+.|.++.+ +|.|+|+|+|++..++.||+|++| ++|+|++.|++
T Consensus 844 ~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~---~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 844 SKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVD---QGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred hhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 97 5999999999999999999999999998753 368999999999999999999999 79999999999
Q ss_pred hhh
Q 005467 674 AEL 676 (695)
Q Consensus 674 ~eL 676 (695)
+++
T Consensus 921 ~~l 923 (924)
T TIGR00630 921 EEV 923 (924)
T ss_pred HHh
Confidence 886
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-24 Score=221.88 Aligned_cols=267 Identities=23% Similarity=0.299 Sum_probs=214.9
Q ss_pred hhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhH----HHHhhhcccccccceechhhhHHHHHHHHHHH
Q 005467 136 VAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVL----LCVTSGIFSGLRSGCFSIANIVLVKRLRETLY 211 (695)
Q Consensus 136 ~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~----~~i~~~i~~~l~~~~~~~~~~~~~~~lr~~lf 211 (695)
+++++.++..+..+..|.+++..++....++.. .......+.+ ..++...+.....+...+...++..++|.+++
T Consensus 3 l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 3 LAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD-NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777788899888888754332211 0011111111 11122223333334455788889999999999
Q ss_pred HhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHHHHHHHHH
Q 005467 212 SALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVY 291 (695)
Q Consensus 212 ~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~~~~~~~~ 291 (695)
+|++++|.++|+++++|++++|+++|++.+++.+...+..++..+...++.+++++.++|++++++++..|++.++...+
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 161 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFIF 161 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhhh
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred hhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccccceeehhhhhhhheeh
Q 005467 292 GQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVM 371 (695)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 371 (695)
.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+.....+........+.....++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (275)
T PF00664_consen 162 SKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVL 241 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888877666655555555555555677
Q ss_pred heeeccee-eeccccChhhhhhhhhhhhheeee
Q 005467 372 AVLLGGMS-IMIGQVSPEQLTKYVLYCEWLIYA 403 (695)
Q Consensus 372 ~l~~g~~~-v~~g~is~G~l~~~~~~~~~l~~~ 403 (695)
++++|+++ +.+|++|+|+++++..|...+..|
T Consensus 242 ~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 242 ILIFGAYLSVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 88899999 999999999999999988777655
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.4e-23 Score=219.82 Aligned_cols=212 Identities=24% Similarity=0.335 Sum_probs=169.8
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
..+++.+|+|.|+..+ .+.+.++++.++.-+++++||++|+||||++|++.+-..|..|-+-+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 4689999999997543 2799999999999999999999999999999999999999999998877 667
Q ss_pred hccccCCcee-eeeeccccc-cccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQL-LQMDIKSNI-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~L-F~~TI~eNI-~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
|+|-.|...= ++-.+..=- .....|..++||+++.|...|++.-+..-| . ..||||||=|+++|-..+.+
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s--i------~~LSGGQKsrvafA~~~~~~ 500 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS--I------ASLSGGQKSRVAFAACTWNN 500 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc--c------cccCCcchhHHHHHHHhcCC
Confidence 8888886542 222221111 111124558999999999998876555433 1 36999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEE-eccchhhhhcCchh
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIE-VGNHAELLHKGRLY 683 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive-~Gth~eLl~~~g~Y 683 (695)
|.+|||||||+.||.++-..+-++|.++ + --||+|||+.+.+.. |+.+-|.++|++.- +|. ...|
T Consensus 501 PhlLVLDEPTNhLD~dsl~AL~~Al~~F-----~-GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~-------~~~y 567 (582)
T KOG0062|consen 501 PHLLVLDEPTNHLDRDSLGALAKALKNF-----N-GGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGG-------IDKY 567 (582)
T ss_pred CcEEEecCCCccccHHHHHHHHHHHHhc-----C-CcEEEEECcHHHHhhcCceeEEEcCCcEEeeecc-------HHHH
Confidence 9999999999999999999888888876 2 389999999999986 99999999999975 122 2246
Q ss_pred HHHHhhhcc
Q 005467 684 AKLVKRQTE 692 (695)
Q Consensus 684 ~~l~~~q~~ 692 (695)
+++...|.+
T Consensus 568 Kkl~~~e~~ 576 (582)
T KOG0062|consen 568 KKLLGAELR 576 (582)
T ss_pred HHHHHHHHh
Confidence 777666543
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-22 Score=217.70 Aligned_cols=221 Identities=23% Similarity=0.366 Sum_probs=146.5
Q ss_pred ccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH
Q 005467 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR 525 (695)
....|.++|++++|++ .++++|++|++.+|++++|+|++||||||+++.+.|=..|..-++-+=-. -+++.+..+.
T Consensus 72 ~s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~l-s~e~~ps~~~ 147 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLL-SREIEPSEKQ 147 (614)
T ss_pred ccccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhh-cccCCCchHH
Confidence 3456999999999975 46999999999999999999999999999999999988886655422100 0112111111
Q ss_pred hhhccccCCceeeee-----eccccccccCCcCCCch---hHHHHHHHhhHhHhHhc----C-CCCcccccccc---ccC
Q 005467 526 EKIGFVGQEPQLLQM-----DIKSNIMYGCPKDVKNE---DIEWAAKQAYVHEFILS----L-PCGYETLVDDD---LLS 589 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~-----TI~eNI~~g~~~~~~~e---ei~~A~~~a~l~~fI~~----L-P~G~dT~vge~---~LS 589 (695)
.+-+|.++. ++. --.|++.-.+ ++...+ ++++-+...+.+.+=.+ | ..|+....-.+ +||
T Consensus 148 -av~~v~~~~--~~e~~rle~~~E~l~~~~-d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~S 223 (614)
T KOG0927|consen 148 -AVQAVVMET--DHERKRLEYLAEDLAQAC-DDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLS 223 (614)
T ss_pred -HHHHHhhhh--HHHHHHHHHHHHHHHhhc-cchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccC
Confidence 111111110 000 0112222111 111111 12221221111111000 0 11332222222 899
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcc-eEEEEeeecccccc-cCeEEEeeCCe-
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-TVIVIAHRLSTIKA-VDRIVVIDDGR- 666 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~-TvIiIaHrlsti~~-aD~IvvL~~G~- 666 (695)
||||-|+||||||+.+|++|+|||||++||.++-.-+.+-|.+. ++ |+++++|.-.++.. |.+|+-|++++
T Consensus 224 gGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~------d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl 297 (614)
T KOG0927|consen 224 GGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY------DRIILVIVSHSQDFLNGVCTNIIHLDNKKL 297 (614)
T ss_pred chHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc------cCceEEEEecchhhhhhHhhhhheecccce
Confidence 99999999999999999999999999999999999888888765 35 89999999999975 99999999999
Q ss_pred EEEeccchhhhhcC
Q 005467 667 IIEVGNHAELLHKG 680 (695)
Q Consensus 667 Ive~Gth~eLl~~~ 680 (695)
+...|++++.+...
T Consensus 298 ~~y~Gnydqy~~tr 311 (614)
T KOG0927|consen 298 IYYEGNYDQYVKTR 311 (614)
T ss_pred eeecCCHHHHhhHH
Confidence 67889999988654
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-22 Score=203.13 Aligned_cols=174 Identities=21% Similarity=0.194 Sum_probs=113.9
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc--CccCCcchh-HHHHhhhccccCCceeeeeeccc
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID--GFPLTDLDI-RWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id--G~di~~i~~-~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
++++++++.+| ..+|+||+|||||||+..|.-... |+.... |..+.++-. ..-...|.+++|..-++.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~----- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA----- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----
Confidence 36777777777 779999999999999988864443 332211 221111100 000122333333332221
Q ss_pred cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh----hcCCcEEEEeccccccCc
Q 005467 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI----LRDPAILLLDEATSALDS 620 (695)
Q Consensus 545 NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl----l~~p~ILILDEaTSaLD~ 620 (695)
| ...+. +.+.+.+++.. .+-.++.+ .+||||||||++||||+ +.+|+++||||||++||.
T Consensus 83 ~-------~~~~~------~~~~~~~~l~~-~~~~~~~~--~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~ 146 (198)
T cd03276 83 N-------PLCVL------SQDMARSFLTS-NKAAVRDV--KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDM 146 (198)
T ss_pred C-------cCCHH------HHHHHHHHhcc-ccccCCcc--cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCH
Confidence 2 01111 12344455544 22222222 37999999999999999 689999999999999999
Q ss_pred ccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCe
Q 005467 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGR 666 (695)
Q Consensus 621 ~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~ 666 (695)
.+...+.+.|.+..++...++|+|+++|+++.+..+|+|-||..|+
T Consensus 147 ~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 147 VNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 9999999999886432012468999999999999999999998753
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-22 Score=208.11 Aligned_cols=190 Identities=27% Similarity=0.433 Sum_probs=137.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-+-+.||+|.||+. +|.+++++|-|.-...+|||||+|.|||||++||.|-.+|+.|+.+=|- |=+|
T Consensus 586 vLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred eeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 35789999999975 5899999999999999999999999999999999999999999886543 3367
Q ss_pred ccccCCce--ee-eeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 529 GFVGQEPQ--LL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 529 ~~V~Qd~~--LF-~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
|+-.|+.- |- ..|-.|-+.-+ .+..-++-+.++-..|+..- -.| |--..||||||-|+++|-.-++.
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~--FNlpyq~ARK~LG~fGL~sH-------AHT-ikikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRK--FNLPYQEARKQLGTFGLASH-------AHT-IKIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHh--cCCChHHHHHHhhhhhhhhc-------cce-EeeeecCCcchHHHHHHHHhcCC
Confidence 77766542 10 11222222111 12223333333333322111 011 11137999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCe-EEEeeCCeE
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDR-IVVIDDGRI 667 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~-IvvL~~G~I 667 (695)
|+||||||||.+||.++-..+-++|.+. +-.||+|||+-..|..-|. ..|+++-.|
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIney------~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINEY------NGGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHhc------cCcEEEEecccceeeecCceEEEEccCCh
Confidence 9999999999999999999999999876 2489999999888876553 445555444
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-21 Score=200.00 Aligned_cols=201 Identities=18% Similarity=0.214 Sum_probs=143.4
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE--EEcCccCCcchhHHHHhhhccccCCceeeeeecccccc
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI--YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 547 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I--~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~ 547 (695)
|.=+.|.+||+++|+||+|+|||||++.+.+..+...+++ .+-...-+..+..++.+.+. ..++-.+.-+.
T Consensus 8 d~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~-----~~~v~~~~~~~-- 80 (249)
T cd01128 8 DLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVK-----GEVIASTFDEP-- 80 (249)
T ss_pred eeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhc-----cEEEEecCCCC--
Confidence 3345788999999999999999999999999998764433 33322223356667766661 11222222110
Q ss_pred ccCCcCCCchhHHHHHHHh---h-----HhHhHhcCCCCcccccccc--ccCCcc--------chhHHHHHHhhcCCcEE
Q 005467 548 YGCPKDVKNEDIEWAAKQA---Y-----VHEFILSLPCGYETLVDDD--LLSGGQ--------KQRIAIARAILRDPAIL 609 (695)
Q Consensus 548 ~g~~~~~~~eei~~A~~~a---~-----l~~fI~~LP~G~dT~vge~--~LSGGQ--------kQRIaIARAll~~p~IL 609 (695)
.+....+ -..+.+.++.. | +-|-+.++|++|++.+|+. .+|||| |||+++||+++++++|.
T Consensus 81 ~~~~~~~-~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt 159 (249)
T cd01128 81 PERHVQV-AEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLT 159 (249)
T ss_pred HHHHHHH-HHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceE
Confidence 0000000 01111111111 1 1145678899999999873 899999 99999999999999999
Q ss_pred EEeccccccCcccchh-hhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHHh
Q 005467 610 LLDEATSALDSESEHY-VKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 688 (695)
Q Consensus 610 ILDEaTSaLD~~tE~~-I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~ 688 (695)
+| ||+++|+.+|.. ++ +.+++ ..++|.|+++||+++..++|.|.||+.|++ |++++..++.|+.+++
T Consensus 160 ~l--~T~~~d~~~~~~~~i--~~~~~---~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~~ 227 (249)
T cd01128 160 II--ATALVDTGSRMDDVI--FEEFK---GTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMWL 227 (249)
T ss_pred Ee--eeheecCCCcccchH--HHHHh---cCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHHH
Confidence 99 999999888865 54 45543 135899999999999999999999999997 8999999999998876
Q ss_pred hh
Q 005467 689 RQ 690 (695)
Q Consensus 689 ~q 690 (695)
.+
T Consensus 228 ~r 229 (249)
T cd01128 228 LR 229 (249)
T ss_pred HH
Confidence 44
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.8e-21 Score=183.89 Aligned_cols=209 Identities=25% Similarity=0.349 Sum_probs=165.9
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc----CCCceEEEcCccCCcchhHHHHhh----hccccCCce
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE----PSDGQIYIDGFPLTDLDIRWLREK----IGFVGQEPQ 536 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~----p~~G~I~idG~di~~i~~~~lR~~----I~~V~Qd~~ 536 (695)
..+.+++|++.+.||+-++||+||||||-++|.++|... .+.-+-++|++|+-.+++...|+. |++++|||.
T Consensus 20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~ 99 (330)
T COG4170 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCch
Confidence 458999999999999999999999999999999999875 456677888999999999888874 568999986
Q ss_pred eee---ee----ccccccccCC-------cCCCchhHHHHHHHhhHhH--hHh-cCCCCccccccccccCCccchhHHHH
Q 005467 537 LLQ---MD----IKSNIMYGCP-------KDVKNEDIEWAAKQAYVHE--FIL-SLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 537 LF~---~T----I~eNI~~g~~-------~~~~~eei~~A~~~a~l~~--fI~-~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
-.- .+ +-+||-.... ..-...+-.+.+..+|++| .|+ +-|. .|--||-|++.||
T Consensus 100 sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~---------ElTeGE~QKVMIA 170 (330)
T COG4170 100 SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPY---------ELTEGECQKVMIA 170 (330)
T ss_pred hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcc---------hhccCcceeeeee
Confidence 321 22 2345532210 0112344455666777754 232 3332 5788999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
-|+..+|++||-||||.++|+.|...|.+.|.++.++ +|-|+++|+|++.++. .||+|-||--|+-+|.+.-++|++
T Consensus 171 ~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn--~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 171 IALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQN--SNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred hhhccCCceEeccCCCcccCccHHHHHHHHHHHhhcc--CCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhc
Confidence 9999999999999999999999999999999887553 6789999999999985 599999999999999999999998
Q ss_pred c-CchhH
Q 005467 679 K-GRLYA 684 (695)
Q Consensus 679 ~-~g~Y~ 684 (695)
. .-.|.
T Consensus 249 ~PhHPYT 255 (330)
T COG4170 249 MPHHPYT 255 (330)
T ss_pred CCCCchH
Confidence 6 44443
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-21 Score=211.03 Aligned_cols=203 Identities=23% Similarity=0.306 Sum_probs=142.3
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
.+|..+|.+.+|+++ ..|++=++++..|.++++||++|+|||||++.|.. |+|.+-.++ ++.|-.
T Consensus 79 ~Di~~~~fdLa~G~k---~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~ 143 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGGK---ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGD 143 (582)
T ss_pred cceeeeeeeeeecch---hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheecc
Confidence 468999999999753 69999999999999999999999999999999998 555333321 011100
Q ss_pred hccccCCceeeeeeccccccccCCcC----CCchhHHH-HHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKD----VKNEDIEW-AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~----~~~eei~~-A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
--...|+. +-.++-+.-+... .+. .+.+||.. +++-.|..+-....|- +.||||=|=|+|||||+
T Consensus 144 ~t~~~~~~-l~~D~~~~dfl~~-e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt--------~slSGGWrMrlaLARAl 213 (582)
T KOG0062|consen 144 DTEALQSV-LESDTERLDFLAE-EKELLAGLTLEEIYDKILAGLGFTPEMQLQPT--------KSLSGGWRMRLALARAL 213 (582)
T ss_pred chHHHhhh-hhccHHHHHHHHh-hhhhhccchHHHHHHHHHHhCCCCHHHHhccc--------cccCcchhhHHHHHHHH
Confidence 00011111 1122222221111 000 12344444 4444444433333332 37999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE-EeccchhhhhcC
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELLHKG 680 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv-e~Gth~eLl~~~ 680 (695)
+++||||+|||||+.||..+-.-+.+-|.+. +.|+|+|+|+-+.+.. |.-|+-+++-|+- ..|++++..+++
T Consensus 214 f~~pDlLLLDEPTNhLDv~av~WLe~yL~t~------~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k 287 (582)
T KOG0062|consen 214 FAKPDLLLLDEPTNHLDVVAVAWLENYLQTW------KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTK 287 (582)
T ss_pred hcCCCEEeecCCcccchhHHHHHHHHHHhhC------CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhh
Confidence 9999999999999999999998888888765 3699999999999866 9999999987774 678888887654
Q ss_pred c
Q 005467 681 R 681 (695)
Q Consensus 681 g 681 (695)
.
T Consensus 288 ~ 288 (582)
T KOG0062|consen 288 P 288 (582)
T ss_pred H
Confidence 3
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.3e-21 Score=187.54 Aligned_cols=86 Identities=22% Similarity=0.323 Sum_probs=78.7
Q ss_pred HhcCCCCccccccccccCCccchhHHHHHHhh----cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEe
Q 005467 572 ILSLPCGYETLVDDDLLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 647 (695)
Q Consensus 572 I~~LP~G~dT~vge~~LSGGQkQRIaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIa 647 (695)
+.-+|+|-.|++ ||||||||++|||++. ++|+++++||||++||+++.+.+.+.|.+..+ +|+|+|+||
T Consensus 83 ~~~~~~~~~~~~----LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~---~g~tiIiiS 155 (178)
T cd03239 83 YFLVLQGKVEQI----LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK---HTSQFIVIT 155 (178)
T ss_pred eEEecCCcCccc----CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEE
Confidence 667899998888 9999999999999985 79999999999999999999999999988743 358999999
Q ss_pred eecccccccCeEEEeeC
Q 005467 648 HRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 648 Hrlsti~~aD~IvvL~~ 664 (695)
|+++.++.||+++++++
T Consensus 156 H~~~~~~~adrvi~i~~ 172 (178)
T cd03239 156 LKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHhhCCeEEEEEE
Confidence 99999999999999986
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-20 Score=201.07 Aligned_cols=183 Identities=28% Similarity=0.433 Sum_probs=135.8
Q ss_pred EEeeecCCCCccceeeeeeeEeec-----CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 454 NISFHYPSRPTVPILNHVCLTIEA-----NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 454 nVsF~Y~~~~~~~vL~~isl~I~~-----Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
+.-++|++- ...+.++.|++++ ||+++++||+|-||||++++|+|...|++|+ ..++ +|
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~v 403 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KV 403 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eE
Confidence 444556542 2356677777665 6799999999999999999999999999998 2221 57
Q ss_pred ccccCCce-eeeeeccccccccCCcC-CCchhHH-HHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 529 GFVGQEPQ-LLQMDIKSNIMYGCPKD-VKNEDIE-WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 529 ~~V~Qd~~-LF~~TI~eNI~~g~~~~-~~~eei~-~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
+|=||-.. -|+|||.+=+.-.. ++ ..+.-.+ +.++--++++.+++- | ..|||||-||+|||-||.|+
T Consensus 404 SyKPQyI~~~~~gtV~~~l~~~~-~~~~~~s~~~~ei~~pl~l~~i~e~~-------v--~~LSGGELQRvaIaa~L~re 473 (591)
T COG1245 404 SYKPQYISPDYDGTVEDLLRSAI-RSAFGSSYFKTEIVKPLNLEDLLERP-------V--DELSGGELQRVAIAAALSRE 473 (591)
T ss_pred eecceeecCCCCCcHHHHHHHhh-hhhcccchhHHhhcCccchHHHHhcc-------c--ccCCchhHHHHHHHHHhccc
Confidence 88888442 37888877665432 12 1111111 123333333332221 0 27999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeC
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD 664 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~ 664 (695)
+++.+||||+|.||.+..-.+-++|+++..+ +++|.++|-|++..+.. +||++|.+.
T Consensus 474 ADlYllDEPSA~LDvEqR~~vakvIRR~~e~--~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 474 ADLYLLDEPSAYLDVEQRIIVAKVIRRFIEN--NEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred cCEEEecCchhhccHHHHHHHHHHHHHHHhh--cCceEEEEecceehhhhhhceEEEEec
Confidence 9999999999999999999999999988754 57999999999999976 999999973
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-20 Score=184.99 Aligned_cols=182 Identities=16% Similarity=0.162 Sum_probs=118.9
Q ss_pred eeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCce---eeeee----
Q 005467 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ---LLQMD---- 541 (695)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~---LF~~T---- 541 (695)
+++.++..+| ..+|+||+|||||||+..|.-..-..... .+ +.-..+++ +..=.++.. -|...
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~---~~---r~~~~~~~---i~~g~~~~~v~~~~~~~~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKL---LG---RAKKVGEF---VKRGCDEGTIEIELYGNPGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccc---cc---cccCHHHH---hhCCCCcEEEEEEEEeCCCcc
Confidence 4555555444 56899999999999999886655221111 00 11111222 222122222 12221
Q ss_pred ccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccc-cccccCCccchhHHHHHHh----hcCCcEEEEecccc
Q 005467 542 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV-DDDLLSGGQKQRIAIARAI----LRDPAILLLDEATS 616 (695)
Q Consensus 542 I~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~v-ge~~LSGGQkQRIaIARAl----l~~p~ILILDEaTS 616 (695)
..+|+++- .+.+.+.+++..... |.+..+|.+.+..- ....||||||||+++|+++ +.+|+++++||||+
T Consensus 85 ~~~n~~~~----~~q~~~~~~~~~~~~-e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~ 159 (213)
T cd03277 85 QVDNLCQF----LPQDRVGEFAKLSPI-ELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ 159 (213)
T ss_pred ccCCceEE----EchHHHHHHHhCChH-hHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence 34555432 256777788888766 66677887665331 1248999999998877554 58999999999999
Q ss_pred ccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccC--eEEEeeCCe
Q 005467 617 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVD--RIVVIDDGR 666 (695)
Q Consensus 617 aLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD--~IvvL~~G~ 666 (695)
+||+.+.+.+.+.+.+..+. ..+.|+|+|||++..+ +.|| +|++|++|+
T Consensus 160 ~LD~~~~~~i~~~l~~~~~~-~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 160 GMDPTNERKVFDMLVETACK-EGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHhhc-CCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99999999999999887431 0125899999998554 4565 778888775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-20 Score=218.20 Aligned_cols=208 Identities=24% Similarity=0.371 Sum_probs=169.6
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC---CCceEEEcCccCCcchhHHHHhhhccccCCceee-ee
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QM 540 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p---~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF-~~ 540 (695)
.++|+|+|.-++||+.+.+.||.|||||||++.|+|-.+- ..|+|..||.+.++... ++.++|.+|+...| ..
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 3699999999999999999999999999999999997753 35699999999999887 78899999988777 47
Q ss_pred eccccccccCC--cC---CC-chhHHHHHHHhhHhHhHhcCCCCcccccccc---ccCCccchhHHHHHHhhcCCcEEEE
Q 005467 541 DIKSNIMYGCP--KD---VK-NEDIEWAAKQAYVHEFILSLPCGYETLVDDD---LLSGGQKQRIAIARAILRDPAILLL 611 (695)
Q Consensus 541 TI~eNI~~g~~--~~---~~-~eei~~A~~~a~l~~fI~~LP~G~dT~vge~---~LSGGQkQRIaIARAll~~p~ILIL 611 (695)
|++|-|.+..+ .. .+ -++-++.+..+.----|-.|....||.||++ ..|||||.|+++|-++..+|+++..
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 99999987631 11 11 1222222211111111236788999999984 8999999999999999999999999
Q ss_pred eccccccCcccchhhhhHHHhhhccccCcceEEEEeeecc--cccccCeEEEeeCCeEEEeccchhhh
Q 005467 612 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS--TIKAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 612 DEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrls--ti~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||+|-+||+-|.-+|.++|++..+ ..+.|.++.=|..+ +....|+|++|.+|+++-+|+.++.+
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~--~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAH--ITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHh--hhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 999999999999999999998754 34678887777654 46789999999999999999999886
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-19 Score=191.35 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=69.6
Q ss_pred ccCCccchhHHHHHHhhc----CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 587 LLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~----~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
.|||||+||+++||+++. +|++++|||||++||+++...+.+.|.+.. +++|+|+|||+++..+.||++++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~----~~~tii~isH~~~~~~~~d~~~~l 245 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELS----RSHQVLCITHLPQVAAMADNHFLV 245 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHh----CCCEEEEEechHHHHHhcCcEEEE
Confidence 599999999999997654 999999999999999999999999998873 358999999999988899999999
Q ss_pred eCCeE
Q 005467 663 DDGRI 667 (695)
Q Consensus 663 ~~G~I 667 (695)
++|..
T Consensus 246 ~~~~~ 250 (276)
T cd03241 246 EKEVE 250 (276)
T ss_pred EEecC
Confidence 98743
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-20 Score=185.47 Aligned_cols=152 Identities=16% Similarity=0.114 Sum_probs=106.6
Q ss_pred eeeeeeEeecCc-EEEEEeecCCChhhHHHHHH-hhhcCCCc-eEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 468 LNHVCLTIEANE-VVAIVGLSGSGKSTFVNLLL-RLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 468 L~~isl~I~~Ge-~vAIVG~SGSGKSTLl~LL~-rly~p~~G-~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
..++||++++|+ +++|+||+||||||+++.+. ..+-++.| .+-... ...++|+.|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~-----------~~~~~~~~~~~~-------- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE-----------GSSLPVFENIFA-------- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc-----------cccCcCccEEEE--------
Confidence 457999999996 69999999999999999988 33222222 110000 001333333311
Q ss_pred cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccch
Q 005467 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624 (695)
Q Consensus 545 NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~ 624 (695)
.++ . .+.+ .+++ ..+|+|+|||..|++++ .+|+++++||||+++|+++..
T Consensus 78 --~lg-~-----------------~~~l---~~~~------s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~ 127 (200)
T cd03280 78 --DIG-D-----------------EQSI---EQSL------STFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGA 127 (200)
T ss_pred --ecC-c-----------------hhhh---hcCc------chHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHH
Confidence 111 0 0000 1111 36899999999999985 899999999999999999988
Q ss_pred hhhh-HHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEec
Q 005467 625 YVKG-VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 625 ~I~~-~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~G 671 (695)
.+.. .++.+.+ .+.|+|++||.....+.||++++|++|++...+
T Consensus 128 ~i~~~~l~~l~~---~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 128 ALAIAILEELLE---RGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHh---cCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 8854 4555532 368999999997777889999999999998653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=168.62 Aligned_cols=209 Identities=19% Similarity=0.230 Sum_probs=150.4
Q ss_pred cceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC-CcchhHHHH
Q 005467 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL-TDLDIRWLR 525 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di-~~i~~~~lR 525 (695)
+..|++.++.|+|+..+ |++.|+|+++|+|....+||.+|||||||+|+|.|-.-...|.|.++|.+- +|-...
T Consensus 11 ~~aievsgl~f~y~~~d--P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~--- 85 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD--PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE--- 85 (291)
T ss_pred cceEEEeccEEecccCC--ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc---
Confidence 35799999999998753 899999999999999999999999999999999999988889999999753 221111
Q ss_pred hhhccccCCceeee-eeccccccccC----CcCCCchhHHHHHHHhhHhHhHh--cCCCCcccccccc--ccCCccchhH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGC----PKDVKNEDIEWAAKQAYVHEFIL--SLPCGYETLVDDD--LLSGGQKQRI 596 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~----~~~~~~eei~~A~~~a~l~~fI~--~LP~G~dT~vge~--~LSGGQkQRI 596 (695)
.-...-+- ++-..|..... ..|.+-|++ +.-++-+++-+ .|=+=+|-.+.=+ .+|-|||+|+
T Consensus 86 ------~Sgdl~YLGgeW~~~~~~agevplq~D~sae~m---ifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRV 156 (291)
T KOG2355|consen 86 ------SSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHM---IFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRV 156 (291)
T ss_pred ------ccCceeEecccccccccccccccccccccHHHH---HhhccCCChhHhhhhhhheeccceEEEeeccccchhhh
Confidence 11111111 12222222220 012332332 22233233211 1111122222222 7999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEec
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVG 671 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~G 671 (695)
-|+--|++.=++|+|||-|-.||....+.+.+-+++-.+ .+|.|++..||=-.-++. +.+++.|.+|+++..-
T Consensus 157 QicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce--~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l 230 (291)
T KOG2355|consen 157 QICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECE--QRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNL 230 (291)
T ss_pred HHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHh--hcCcEEEEEeeeccchhhcchhEEEecCCeeeecc
Confidence 999999999999999999999999999999888877654 468999999999988865 9999999999999733
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.1e-19 Score=184.34 Aligned_cols=179 Identities=26% Similarity=0.421 Sum_probs=135.9
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh--------hcCCCceEEEcCccCCcchhHHHHhhhccccC--Cc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--------YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ--EP 535 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl--------y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Q--d~ 535 (695)
++|+||||+|+||+.++|||+|||||||++.+++|+ |.|++|.|.+--..+. +.+|- ||
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~-----------a~iPge~Ep 465 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYEP 465 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh-----------hccCccccc
Confidence 689999999999999999999999999999999997 6899999987543322 22333 33
Q ss_pred eeeeeeccccccccCCcCCCc-hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEecc
Q 005467 536 QLLQMDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 614 (695)
Q Consensus 536 ~LF~~TI~eNI~~g~~~~~~~-eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEa 614 (695)
.+=.-||-|-+.= +..| .--.+.++.+|+.|-+.-- . --+.||-|||-|.-||+++-..|.+++.||.
T Consensus 466 ~f~~~tilehl~s----~tGD~~~AveILnraGlsDAvlyR-----r--~f~ELStGQKeR~KLAkllaerpn~~~iDEF 534 (593)
T COG2401 466 EFGEVTILEHLRS----KTGDLNAAVEILNRAGLSDAVLYR-----R--KFSELSTGQKERAKLAKLLAERPNVLLIDEF 534 (593)
T ss_pred ccCchhHHHHHhh----ccCchhHHHHHHHhhccchhhhhh-----c--cHhhcCcchHHHHHHHHHHhcCCCcEEhhhh
Confidence 3222355555431 2222 1234567777776644310 0 0137999999999999999999999999999
Q ss_pred ccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc--cCeEEEeeCCeEE
Q 005467 615 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRII 668 (695)
Q Consensus 615 TSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~--aD~IvvL~~G~Iv 668 (695)
-|.||+.|...|-..|.++.+. .|.|.++||||.+.+.. -|+++.+.=|+..
T Consensus 535 ~AhLD~~TA~rVArkiselaRe--~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 535 AAHLDELTAVRVARKISELARE--AGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhcCHHHHHHHHHHHHHHHHH--hCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 9999999999999999988643 57899999999999865 6898888766654
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-18 Score=167.84 Aligned_cols=136 Identities=24% Similarity=0.288 Sum_probs=101.9
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcc-ccCCceeeeeeccccccccC
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF-VGQEPQLLQMDIKSNIMYGC 550 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~-V~Qd~~LF~~TI~eNI~~g~ 550 (695)
+..+.++..+.|+||+||||||+++.+.-..-...|.+.-.. +. +.|+ ++++..-| .+.
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~--------i~~- 74 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL--------IFT- 74 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE--------ehh-
Confidence 344445579999999999999999997666655656554410 00 1221 22222111 000
Q ss_pred CcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc----CCcEEEEeccccccCcccchhh
Q 005467 551 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYV 626 (695)
Q Consensus 551 ~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~----~p~ILILDEaTSaLD~~tE~~I 626 (695)
..+||+||+||++|||++.. +|++++||||++++|++....+
T Consensus 75 ----------------------------------~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l 120 (162)
T cd03227 75 ----------------------------------RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQAL 120 (162)
T ss_pred ----------------------------------eeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 01299999999999999987 7899999999999999999999
Q ss_pred hhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 627 ~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
.+.+.+..+ +++|+|++||+++..+.+|+++.|+.
T Consensus 121 ~~~l~~~~~---~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 121 AEAILEHLV---KGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHh---cCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 999987643 25799999999999999999999974
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.4e-18 Score=191.51 Aligned_cols=218 Identities=29% Similarity=0.424 Sum_probs=148.4
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHH-----HHHhhhcC---C-------Cc------eEEEcCccCCcch-----
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVN-----LLLRLYEP---S-------DG------QIYIDGFPLTDLD----- 520 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~-----LL~rly~p---~-------~G------~I~idG~di~~i~----- 520 (695)
=|+||+.+||-|..++|.|-||||||||++ .+.+...- . .| -|.||--+|..-+
T Consensus 616 NLkni~v~iPLg~~t~VTGVSGSGKSTLIn~tL~~a~~~~l~~~~~~p~~~~~i~G~e~idkvI~IdQsPIGRTpRSNPA 695 (935)
T COG0178 616 NLKNIDVEIPLGVFTCVTGVSGSGKSTLINDTLVPALARHLNGTKEEPGPYKKIEGLEHIDKVIDIDQSPIGRTPRSNPA 695 (935)
T ss_pred CcccceeecccccEEEEEecCCCCHHHhHHHHHHHHHHHHhccCCCCCCCcceeechhhcCeEEEecCCCCCCCCCCCcc
Confidence 499999999999999999999999999983 33333321 1 11 2455555553221
Q ss_pred -----hHHHHhhhccccC------Cceeeeeecccc------------ccccCCcCC------------C---------c
Q 005467 521 -----IRWLREKIGFVGQ------EPQLLQMDIKSN------------IMYGCPKDV------------K---------N 556 (695)
Q Consensus 521 -----~~~lR~~I~~V~Q------d~~LF~~TI~eN------------I~~g~~~~~------------~---------~ 556 (695)
.+..|+..+-+|. .+--|+-.++.- |-|.--||+ + .
T Consensus 696 TYtg~Fd~IR~lFA~tpeAK~rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~EtLev~ykG 775 (935)
T COG0178 696 TYTGVFDDIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRETLEVKYKG 775 (935)
T ss_pred chhcchHHHHHHHhcChHHHHcCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCcccccceEEEEECC
Confidence 2344544443332 222333222200 000000110 0 1
Q ss_pred hhHHHHHHH--hhHhHhHhcCCC---Cccccc---------cc--cccCCccchhHHHHHHhhcCC---cEEEEeccccc
Q 005467 557 EDIEWAAKQ--AYVHEFILSLPC---GYETLV---------DD--DLLSGGQKQRIAIARAILRDP---AILLLDEATSA 617 (695)
Q Consensus 557 eei~~A~~~--a~l~~fI~~LP~---G~dT~v---------ge--~~LSGGQkQRIaIARAll~~p---~ILILDEaTSa 617 (695)
..|-+++++ ..+++|.+..|. .++|.+ |. ..|||||.|||=||.-|.|.. -+.||||||.+
T Consensus 776 K~IadVL~MTveEA~~FF~~~p~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTG 855 (935)
T COG0178 776 KNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTG 855 (935)
T ss_pred ccHHHHHhccHHHHHHHHhcchHHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCC
Confidence 233333332 345677777663 444432 43 289999999999999999987 99999999999
Q ss_pred cCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe------eCCeEEEeccchhhhhcCchhHHHH
Q 005467 618 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 618 LD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL------~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
|-.+--+++++.|.++.. +|.|||+|-|+|..|+.||+|+=| +.|+|+.+||++|+.+..+.|.--|
T Consensus 856 LH~~Di~kLl~VL~rLvd---~GnTViVIEHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~y 928 (935)
T COG0178 856 LHFDDIKKLLEVLHRLVD---KGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKY 928 (935)
T ss_pred CCHHHHHHHHHHHHHHHh---CCCEEEEEecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhHHH
Confidence 999999999999998863 579999999999999999999998 4799999999999998766665433
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-18 Score=209.31 Aligned_cols=211 Identities=21% Similarity=0.278 Sum_probs=145.1
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHH------hhh---cCCCceEEEcCccCCcch----------hHHHHhh
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL------RLY---EPSDGQIYIDGFPLTDLD----------IRWLREK 527 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~------rly---~p~~G~I~idG~di~~i~----------~~~lR~~ 527 (695)
=|+||+++||-|..++|.|-||||||||++=.+ .+. +.-+--|.||-.+|..-+ .+.+|+.
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 489999999999999999999999999997433 111 223344888887775432 3455665
Q ss_pred hccccC------Cceeeeee--------------ccccccccCCcCC-----------------------------Cchh
Q 005467 528 IGFVGQ------EPQLLQMD--------------IKSNIMYGCPKDV-----------------------------KNED 558 (695)
Q Consensus 528 I~~V~Q------d~~LF~~T--------------I~eNI~~g~~~~~-----------------------------~~ee 558 (695)
.+-.|+ .+-.|+-. |+-+..|- +|+ -+=.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl--~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mt 1662 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFY--ALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTP 1662 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccC--CCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCC
Confidence 553332 22233221 22222211 111 0011
Q ss_pred HHHHHHHh----hHh---HhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcC---CcEEEEeccccccCcccchhh
Q 005467 559 IEWAAKQA----YVH---EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYV 626 (695)
Q Consensus 559 i~~A~~~a----~l~---~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~---p~ILILDEaTSaLD~~tE~~I 626 (695)
+.+|++.- .++ +.+.++--||=+ +|.. .|||||.|||-||..|.++ +.++||||||.+|+...-+.+
T Consensus 1663 v~ea~~~F~~~~~i~~~L~~L~~vGLgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~L 1741 (1809)
T PRK00635 1663 IEEVAETFPFLKKIQKPLQALIDNGLGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSAL 1741 (1809)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHcCCCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHH
Confidence 22222221 111 122233334432 4543 8999999999999999976 789999999999999999999
Q ss_pred hhHHHhhhccccCcceEEEEeeecccccccCeEEEee------CCeEEEeccchhhhhcCchh
Q 005467 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID------DGRIIEVGNHAELLHKGRLY 683 (695)
Q Consensus 627 ~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~------~G~Ive~Gth~eLl~~~g~Y 683 (695)
.+.|+++.. .|.|||+|.|++..++.||+|+-|. .|+|+.+||++|+.+...-|
T Consensus 1742 l~~l~~L~~---~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~ 1801 (1809)
T PRK00635 1742 LVQLRTLVS---LGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKDSL 1801 (1809)
T ss_pred HHHHHHHHh---cCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCc
Confidence 999988853 5789999999999999999999994 69999999999999865444
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-17 Score=169.68 Aligned_cols=153 Identities=18% Similarity=0.187 Sum_probs=113.8
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc-cccCCceeeeeecc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG-FVGQEPQLLQMDIK 543 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~-~V~Qd~~LF~~TI~ 543 (695)
..+.+|+++++++|++++|.|||||||||+++.+.- -.+..++| +||.+...+ .+.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~--~~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADI--PIV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEE--ecc
Confidence 468999999999999999999999999999999982 14456777 888876322 222
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh--hcCCcEEEEecc---cccc
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEA---TSAL 618 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl--l~~p~ILILDEa---TSaL 618 (695)
|.|. ...++.+.+ .+++|.|++|+..+|+++ +.+|+++||||| |+++
T Consensus 74 ~~il----------------~~~~l~d~~------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~l 125 (222)
T cd03285 74 DCIL----------------ARVGASDSQ------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTY 125 (222)
T ss_pred ceeE----------------eeeccccch------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChH
Confidence 3321 111111111 246899999999999999 899999999999 9999
Q ss_pred CcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEecc
Q 005467 619 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 619 D~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gt 672 (695)
|........ ++.+.+ ..++|+|++||..+..+.||++..+++|++...++
T Consensus 126 D~~~~~~~i--l~~l~~--~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 126 DGFGLAWAI--AEYIAT--QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHH--HHHHHh--cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 997665332 233322 13589999999755556699999999999987664
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.3e-18 Score=150.71 Aligned_cols=76 Identities=22% Similarity=0.197 Sum_probs=72.3
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
.++|++++|++++||.++|+||||||||||++++. +|++.++|.|+..++.++.++.+++++|+ +|.+||+|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 36899999999999999999999999999999986 89999999999999999999999999999 99999999
Q ss_pred cccc
Q 005467 545 NIMY 548 (695)
Q Consensus 545 NI~~ 548 (695)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9997
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-16 Score=167.28 Aligned_cols=74 Identities=23% Similarity=0.343 Sum_probs=61.2
Q ss_pred ccCCccchhHHHHHHhh---------cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-c
Q 005467 587 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-V 656 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll---------~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-a 656 (695)
-+|+||+|+++|||++. ++|++++|||||++||+.....+.+.+.+. + .+++++|+...+.. |
T Consensus 183 ~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~------~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 183 FGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR------V-QTFVTTTDLADFDALW 255 (270)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC------C-CEEEEeCCchhccchh
Confidence 48999999999999974 799999999999999999999998888764 1 45666665555443 5
Q ss_pred ---CeEEEeeCCeE
Q 005467 657 ---DRIVVIDDGRI 667 (695)
Q Consensus 657 ---D~IvvL~~G~I 667 (695)
++|+.+++|+|
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.4e-17 Score=162.44 Aligned_cols=154 Identities=12% Similarity=0.099 Sum_probs=104.2
Q ss_pred eeeEeecCcEEEEEeecCCChhhHHHHHHh-hhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccccccc
Q 005467 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 549 (695)
Q Consensus 471 isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r-ly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g 549 (695)
.++++.+|++++|+||+||||||+++.+.+ .+.++.|...- ..+..+++..|....|. ..+++.
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~~--~~d~i~-- 86 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRIG--AEDSIS-- 86 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEec--Cccccc--
Confidence 345555899999999999999999999994 43333332111 01223444333222111 111111
Q ss_pred CCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhH
Q 005467 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 629 (695)
Q Consensus 550 ~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~ 629 (695)
+++ +.+|++++| +..+-+...+|+++||||||+++|+.....+...
T Consensus 87 ---------------------------~~~------s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ 132 (202)
T cd03243 87 ---------------------------DGR------STFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYA 132 (202)
T ss_pred ---------------------------CCc------eeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHH
Confidence 010 235555655 6666777889999999999999999887776554
Q ss_pred -HHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhh
Q 005467 630 -LHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 630 -L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eL 676 (695)
++.+.+ .+.|+|++||+...++.||++..+++|++.+.++.+++
T Consensus 133 ll~~l~~---~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 133 VLEHLLE---KGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHh---cCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 444432 36899999999999999999999999999998875544
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.66 E-value=7e-17 Score=161.71 Aligned_cols=145 Identities=19% Similarity=0.245 Sum_probs=99.8
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceee-eeecc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIK 543 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF-~~TI~ 543 (695)
++|++|++|+. |++++|+|||||||||+++.+.+..- +..+|.++..- +++.|...+| +.|+.
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 36888888775 79999999999999999999987553 22356554321 3667765566 56999
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccc
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE 623 (695)
||+..+. ....+++. .+++.++.+. +++|+++|+||||+++|+.+.
T Consensus 78 d~l~~~~--s~~~~e~~------~~~~iL~~~~--------------------------~~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 78 DDLRDGI--SYFYAELR------RLKEIVEKAK--------------------------KGEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred hcccccc--ChHHHHHH------HHHHHHHhcc--------------------------CCCCeEEEEecccCCCCHHHH
Confidence 9998873 22222222 2233333321 079999999999999999988
Q ss_pred hhhhh-HHHhhhccccCcceEEEEeeecccccc---cCeEEEe
Q 005467 624 HYVKG-VLHALRNDCKTKRTVIVIAHRLSTIKA---VDRIVVI 662 (695)
Q Consensus 624 ~~I~~-~L~~~~~~~~~~~TvIiIaHrlsti~~---aD~IvvL 662 (695)
..+.. .++++.+ .+.|+|++||++..++. .++|-.+
T Consensus 124 ~~l~~~ll~~l~~---~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 124 QAASAAVLKFLKN---KNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHH---CCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 76654 4555532 36899999999887654 3455443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-16 Score=170.62 Aligned_cols=185 Identities=29% Similarity=0.437 Sum_probs=124.6
Q ss_pred EEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch--hHHHH------
Q 005467 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD--IRWLR------ 525 (695)
Q Consensus 454 nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~--~~~lR------ 525 (695)
++.-+|+.+ --.|..+- +.+||++++|+||+|-||||.+|+|+|-..|+=|+- ++-+ +++ .+.+|
T Consensus 79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp--~wdeVi~~FrGtELq~ 151 (591)
T COG1245 79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPP--SWDEVIKRFRGTELQN 151 (591)
T ss_pred cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCC--CHHHHHHHhhhhHHHH
Confidence 566778532 12344433 256799999999999999999999999999998864 3311 111 11111
Q ss_pred -------------hhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCC
Q 005467 526 -------------EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSG 590 (695)
Q Consensus 526 -------------~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSG 590 (695)
.++-||.-=|..+.|++.|=+.- +-+.-..+|.++.| +++-.+.- +.|||
T Consensus 152 YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~-------------~de~g~~devve~l--~L~nvl~r~v~~LSG 216 (591)
T COG1245 152 YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKK-------------VDERGKFDEVVERL--GLENVLDRDVSELSG 216 (591)
T ss_pred HHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHh-------------hhhcCcHHHHHHHh--cchhhhhhhhhhcCc
Confidence 01112222223333333332221 11112344555543 34444442 38999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEee
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 663 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~ 663 (695)
||-||+|||-|++|+++++++|||||-||....-.+-+.++++.++ +++||+|-|+|..+.. +|-|-++-
T Consensus 217 GELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~---~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 217 GELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED---GKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred hHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc---CCeEEEEechHHHHHHhhheeEEEe
Confidence 9999999999999999999999999999999888888888888542 6999999999999976 89888774
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-16 Score=191.19 Aligned_cols=91 Identities=33% Similarity=0.502 Sum_probs=85.0
Q ss_pred cccCCccchhHHHHHHhhcCC--cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe-
Q 005467 586 DLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI- 662 (695)
Q Consensus 586 ~~LSGGQkQRIaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL- 662 (695)
..|||||||||+|||||..+| +++||||||++||++..+.+.+.|+++++ .|.|||+|+|++..+..||+|++|
T Consensus 488 ~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~---~G~TVIvVeH~~~~i~~aD~vi~Lg 564 (943)
T PRK00349 488 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD---LGNTLIVVEHDEDTIRAADYIVDIG 564 (943)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhCCEEEEec
Confidence 389999999999999999997 99999999999999999999999999853 478999999999999999999999
Q ss_pred -----eCCeEEEeccchhhhhc
Q 005467 663 -----DDGRIIEVGNHAELLHK 679 (695)
Q Consensus 663 -----~~G~Ive~Gth~eLl~~ 679 (695)
++|+|+..|+.+|+++.
T Consensus 565 pgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 565 PGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred cccCCCCCEEeeccCHHHHhcC
Confidence 99999999999998764
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-16 Score=190.31 Aligned_cols=91 Identities=33% Similarity=0.507 Sum_probs=84.7
Q ss_pred cccCCccchhHHHHHHhhcCC--cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe-
Q 005467 586 DLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI- 662 (695)
Q Consensus 586 ~~LSGGQkQRIaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL- 662 (695)
..|||||+||++|||||..+| +++||||||++||+++.+.+.+.|.++.+ +|.|||+|+|+++.++.||+|++|
T Consensus 486 ~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~---~G~TVIvVeHd~~~i~~aD~vi~Lg 562 (924)
T TIGR00630 486 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD---LGNTVIVVEHDEETIRAADYVIDIG 562 (924)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh---CCCEEEEEECCHHHHhhCCEEEEec
Confidence 389999999999999999986 89999999999999999999999999853 478999999999999999999999
Q ss_pred -----eCCeEEEeccchhhhhc
Q 005467 663 -----DDGRIIEVGNHAELLHK 679 (695)
Q Consensus 663 -----~~G~Ive~Gth~eLl~~ 679 (695)
++|+|++.|+.+|+...
T Consensus 563 pgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 563 PGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred ccccCCCCEEeeccCHHHHhcC
Confidence 99999999999998653
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.7e-16 Score=159.77 Aligned_cols=142 Identities=21% Similarity=0.303 Sum_probs=106.2
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch-hHHHHhhhccccCCceeeeeeccccccccCCcCCCch
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 557 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~-~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~e 557 (695)
+.++|+||+||||||+++.|+|++.|.+|+|.++|+++..++ ..++...++++||...--..++.||- + .
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~-k---- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----P-K---- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----h-H----
Confidence 689999999999999999999999999999999999998775 56778888999997632223455551 1 1
Q ss_pred hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccc
Q 005467 558 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC 637 (695)
Q Consensus 558 ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~ 637 (695)
..++ ..++|+. +|+++|+|||++ ++.+...++..
T Consensus 183 -------~~~~---------------------------~~~i~~~--~P~villDE~~~------~e~~~~l~~~~---- 216 (270)
T TIGR02858 183 -------AEGM---------------------------MMLIRSM--SPDVIVVDEIGR------EEDVEALLEAL---- 216 (270)
T ss_pred -------HHHH---------------------------HHHHHhC--CCCEEEEeCCCc------HHHHHHHHHHH----
Confidence 1111 4556664 999999999974 23344444444
Q ss_pred cCcceEEEEeeeccc--c------------cccCeEEEeeCCeEEEeccchhhh
Q 005467 638 KTKRTVIVIAHRLST--I------------KAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 638 ~~~~TvIiIaHrlst--i------------~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
..|.|+|+++|..+. + .-+||+++|++|+ ..|+.+++.
T Consensus 217 ~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 217 HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 246899999997655 3 4489999999987 777777654
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-16 Score=194.55 Aligned_cols=137 Identities=20% Similarity=0.201 Sum_probs=112.3
Q ss_pred eeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccch------hHHHHHHhhcCCcEE
Q 005467 537 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQ------RIAIARAILRDPAIL 609 (695)
Q Consensus 537 LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQ------RIaIARAll~~p~IL 609 (695)
.|+||++|||++ + ++++++ +.|++.+++++|+..+|.| ||.++. ++||||||| |++||||++.+|++|
T Consensus 1153 ~~~~~~~~~i~~-~-~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-R-SDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhc-C-CCCChH--HHHHHHcCchHHHhccCCC-CeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 489999999999 4 577766 7899999999999999999 999987 499999999 999999999999999
Q ss_pred EEeccccccCcccchhhhhHHHhhhccc--cCcceEEEEeeeccccc------ccCeEEEeeC----CeEEEeccchhhh
Q 005467 610 LLDEATSALDSESEHYVKGVLHALRNDC--KTKRTVIVIAHRLSTIK------AVDRIVVIDD----GRIIEVGNHAELL 677 (695)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~L~~~~~~~--~~~~TvIiIaHrlsti~------~aD~IvvL~~----G~Ive~Gth~eLl 677 (695)
+|||||++||+.+...+.+.|.++.... ..|.|+|+|||++..+. .||+.+-+.+ -.+++.-+++-++
T Consensus 1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1307 (1311)
T TIGR00606 1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLKKNEDQCSEIVKCSPSSLG 1307 (1311)
T ss_pred EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeeeeccccCceeEeeCCcccc
Confidence 9999999999999999999888764211 13679999999998765 3567665542 2244555666555
Q ss_pred h
Q 005467 678 H 678 (695)
Q Consensus 678 ~ 678 (695)
.
T Consensus 1308 ~ 1308 (1311)
T TIGR00606 1308 K 1308 (1311)
T ss_pred c
Confidence 4
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-14 Score=144.72 Aligned_cols=140 Identities=19% Similarity=0.188 Sum_probs=96.3
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcc-ccCCceeeeeecc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF-VGQEPQLLQMDIK 543 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~-V~Qd~~LF~~TI~ 543 (695)
+.+.+|++|++++|++++|.|||||||||+++.+.++. +..++|+ ||-+. ..-++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 46999999999999999999999999999999998884 4445553 22221 122455
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccc
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE 623 (695)
|||... +..+-+-.-+.+.+|+|+||+. .+-++..+|++++||||++++|+...
T Consensus 73 d~I~~~-------------------------~~~~d~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~~~~ 126 (204)
T cd03282 73 NRLLSR-------------------------LSNDDSMERNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTSSADG 126 (204)
T ss_pred hheeEe-------------------------cCCccccchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCHHHH
Confidence 555322 1110000112247899999764 44557789999999999999999764
Q ss_pred hhhhh-HHHhhhccccCcceEEEEeeeccccccc
Q 005467 624 HYVKG-VLHALRNDCKTKRTVIVIAHRLSTIKAV 656 (695)
Q Consensus 624 ~~I~~-~L~~~~~~~~~~~TvIiIaHrlsti~~a 656 (695)
..+.. .++.+.+ .++++|++||..+.++.+
T Consensus 127 ~~l~~~il~~l~~---~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 127 FAISLAILECLIK---KESTVFFATHFRDIAAIL 157 (204)
T ss_pred HHHHHHHHHHHHh---cCCEEEEECChHHHHHHh
Confidence 44433 3444432 368999999999887653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-15 Score=156.88 Aligned_cols=208 Identities=20% Similarity=0.369 Sum_probs=137.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh--hhcCCCceEEEcCccCCcchh-----
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDI----- 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r--ly~p~~G~I~idG~di~~i~~----- 521 (695)
+|.++|.+.+-.+ +..+-|-||.|-.|..+++|||+|-|||||++-+.- |--|..=.|++..+.+---+.
T Consensus 264 DIKiEnF~ISA~G---k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 264 DIKIENFDISAQG---KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred cceeeeeeeeccc---ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence 5888888777643 458899999999999999999999999999998864 333444455555444321111
Q ss_pred --HHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHH---HHHhh-------HhHhHhcCCCCcccccccc---
Q 005467 522 --RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA---AKQAY-------VHEFILSLPCGYETLVDDD--- 586 (695)
Q Consensus 522 --~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A---~~~a~-------l~~fI~~LP~G~dT~vge~--- 586 (695)
+.=.++..++-.+..|.+ -|--| + .--.|++.++ ++..| +...+.. -|++-..-++
T Consensus 341 vl~aD~kRl~lLeee~~L~~-----q~e~G-d-~taaErl~~v~~ELraiGA~sAEarARRILAG--LGFskEMQ~rPt~ 411 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAKLMS-----QIEEG-D-TTAAERLKEVADELRAIGADSAEARARRILAG--LGFSKEMQERPTT 411 (807)
T ss_pred HHHhhHHHHHHHHHHHHHHH-----HHHcC-c-hHHHHHHHHHHHHHHHhccccchhHHHHHHhh--cCCChhHhcCCcc
Confidence 111122233222222211 11112 1 1011222222 22222 2222222 3666666554
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCC
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 665 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G 665 (695)
.+|||=|-|+++||||+-.|-+|.|||||.+||-..---+-+.|.-+ .+|.++|+|+-+.+.+ |..|+.||+-
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW------kKTLLIVSHDQgFLD~VCtdIIHLD~q 485 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW------KKTLLIVSHDQGFLDSVCTDIIHLDNQ 485 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh------hheeEEEecccchHHHHHHHHhhhhhh
Confidence 79999999999999999999999999999999998776666666554 4899999999999976 9999999998
Q ss_pred eEE-Eeccch
Q 005467 666 RII-EVGNHA 674 (695)
Q Consensus 666 ~Iv-e~Gth~ 674 (695)
++- .+|++.
T Consensus 486 kLhyYrGNY~ 495 (807)
T KOG0066|consen 486 KLHYYRGNYT 495 (807)
T ss_pred hhhhhcchHH
Confidence 875 456653
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-14 Score=147.17 Aligned_cols=150 Identities=20% Similarity=0.233 Sum_probs=99.6
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eN 545 (695)
.|.+|++|++++ ++++|+|||||||||+++.+.+..-. ++.-...+. .+..++++.| +|
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--------~~~g~~vp~--~~~~i~~~~~---i~------- 77 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--------AQIGSFVPA--SKAEIGVVDR---IF------- 77 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--------hccCCeecc--ccceecceee---Ee-------
Confidence 589999999987 99999999999999999999875411 110000110 1123343322 11
Q ss_pred ccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccchhH----HHHHHhh--cCCcEEEEecc---c
Q 005467 546 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRI----AIARAIL--RDPAILLLDEA---T 615 (695)
Q Consensus 546 I~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQRI----aIARAll--~~p~ILILDEa---T 615 (695)
+.++. +++|+||.++. .+++++- .+|++++|||| |
T Consensus 78 -----------------------------------~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 78 -----------------------------------TRIGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred -----------------------------------ccCCchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 11221 35666666643 3666654 59999999999 9
Q ss_pred cccCcccc-hhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhh
Q 005467 616 SALDSESE-HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 616 SaLD~~tE-~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eL 676 (695)
+++|...- ..+.+.+.+ ..++|+|++||..+..+.+|++--+++|++...++-+++
T Consensus 123 ~~lD~~~~~~~il~~l~~-----~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 123 STYDGLSIAWAIVEYLHE-----KIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred ChHHHHHHHHHHHHHHHh-----ccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 99998542 333333322 135899999999877777888877888998877766655
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.9e-14 Score=151.40 Aligned_cols=75 Identities=25% Similarity=0.395 Sum_probs=64.4
Q ss_pred ccCCccchhHHHHHHhh---------cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc--
Q 005467 587 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-- 655 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll---------~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-- 655 (695)
.+|+||+|+++||+++. ++|+||+||||+|.||++....+.+.+.+. +.++++.+|.+..+..
T Consensus 273 ~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~------~~qv~it~~~~~~~~~~~ 346 (361)
T PRK00064 273 FGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL------GAQVFITTTDLEDLADLL 346 (361)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc------CCEEEEEcCChhhhhhhh
Confidence 68999999999999884 899999999999999999998888877653 2588999998766543
Q ss_pred -cCeEEEeeCCeE
Q 005467 656 -VDRIVVIDDGRI 667 (695)
Q Consensus 656 -aD~IvvL~~G~I 667 (695)
+++++.+++|+|
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 468999999997
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-13 Score=140.61 Aligned_cols=73 Identities=26% Similarity=0.489 Sum_probs=57.5
Q ss_pred ccCCccchhHHHH----HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 587 LLSGGQKQRIAIA----RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 587 ~LSGGQkQRIaIA----RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
.||||||-+++|| ..-+++.|++||||+.++||......+.+.|.+..+ +.-+|++||+......||+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~----~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK----QSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT----TSEEEEE-S-HHHHTT-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccc
Confidence 7999999999997 334578999999999999999999999999998743 36799999999999999998876
Q ss_pred e
Q 005467 663 D 663 (695)
Q Consensus 663 ~ 663 (695)
.
T Consensus 212 ~ 212 (220)
T PF02463_consen 212 T 212 (220)
T ss_dssp E
T ss_pred c
Confidence 3
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=145.19 Aligned_cols=179 Identities=21% Similarity=0.232 Sum_probs=128.8
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc--------hhHHHHhhhccccCCce
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL--------DIRWLREKIGFVGQEPQ 536 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i--------~~~~lR~~I~~V~Qd~~ 536 (695)
..+++++ |++++|++++|+|+||+|||||+++|+|+++|+.|.|.+.|..-+++ +.+.+++.|++|.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~-- 222 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS-- 222 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC--
Confidence 4689999 99999999999999999999999999999999999999966554433 233344555554321
Q ss_pred eeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCC-ccchh-HHHHHHhhcCCcEEEEecc
Q 005467 537 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSG-GQKQR-IAIARAILRDPAILLLDEA 614 (695)
Q Consensus 537 LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSG-GQkQR-IaIARAll~~p~ILILDEa 614 (695)
++..-+++..+.-..-+.|+... +|.|..+=-++++- -|-|| |++| +..|| .
T Consensus 223 ---------------~~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~A~A~rEisl~---~ge~P------~ 276 (438)
T PRK07721 223 ---------------DQPALMRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRVAMAQREIGLA---VGEPP------T 276 (438)
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHHHHHHHHHHHh---cCCCC------c
Confidence 12234566666666667788775 58888775432220 01111 1221 22333 5
Q ss_pred ccccCcccchhhhhHHHhhhccccCcc-----eEEEEeeecccccccCeEEEeeCCeEEEeccch
Q 005467 615 TSALDSESEHYVKGVLHALRNDCKTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 615 TSaLD~~tE~~I~~~L~~~~~~~~~~~-----TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~ 674 (695)
|+++|+..-..+.+.+++..+. .+|. ||++.+|+++. .-||++.++.+|+|+..|+-.
T Consensus 277 ~~G~dp~~~~~l~~ller~~~~-~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 277 TKGYTPSVFAILPKLLERTGTN-ASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred cccCCHHHHHHHHHHHHHhcCC-CCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHH
Confidence 8999999999999999887532 2565 99999999996 789999999999999888744
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-13 Score=158.26 Aligned_cols=104 Identities=26% Similarity=0.416 Sum_probs=85.2
Q ss_pred hHHHHHHHhhHhHhHhcCCCCccccccc--------cccCCccchhHHHHHHhh----------cCCcEEEEeccc-ccc
Q 005467 558 DIEWAAKQAYVHEFILSLPCGYETLVDD--------DLLSGGQKQRIAIARAIL----------RDPAILLLDEAT-SAL 618 (695)
Q Consensus 558 ei~~A~~~a~l~~fI~~LP~G~dT~vge--------~~LSGGQkQRIaIARAll----------~~p~ILILDEaT-SaL 618 (695)
.+.+.++..+. ++...+|+++++.+++ ..||||||||++||||++ .+|++||||||| ++|
T Consensus 432 ~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~l 510 (562)
T PHA02562 432 QINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGAL 510 (562)
T ss_pred HHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCccc
Confidence 34444444443 4555678888888854 279999999999999887 599999999998 789
Q ss_pred CcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC-CeE
Q 005467 619 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD-GRI 667 (695)
Q Consensus 619 D~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~-G~I 667 (695)
|+.+...+.+.|.++ + ++|+|+|||+......||++++|++ |+.
T Consensus 511 d~~~~~~~~~~l~~~-~----~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 511 DAEGTKALLSILDSL-K----DTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred chhHHHHHHHHHHhC-C----CCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 999999999999876 2 5899999999998889999999986 544
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.6e-13 Score=142.16 Aligned_cols=200 Identities=24% Similarity=0.412 Sum_probs=137.7
Q ss_pred eecCCCCccceeeeeeeEeecCc-----EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccc
Q 005467 457 FHYPSRPTVPILNHVCLTIEANE-----VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 531 (695)
Q Consensus 457 F~Y~~~~~~~vL~~isl~I~~Ge-----~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V 531 (695)
|+||+- +..+.+..|.|+.|| .+...|++|-||||++++++|..+|++|. ++..+ .++|=
T Consensus 343 y~Yp~m--~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSyk 407 (592)
T KOG0063|consen 343 YSYPKM--KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYK 407 (592)
T ss_pred eccCcc--eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceecc
Confidence 678863 468899999999996 67889999999999999999999998762 22233 35666
Q ss_pred cCCce-eeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCcE
Q 005467 532 GQEPQ-LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAI 608 (695)
Q Consensus 532 ~Qd~~-LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~I 608 (695)
||... =|.+|+|.=+. +.++.+...-+....+.. |-..+-.++. .+||||+.||+|||=++=+.+++
T Consensus 408 pqkispK~~~tvR~ll~---------~kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~lSggelQRval~KOGGKpAdv 477 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLH---------TKIRDAYMHPQFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALALCLGKPADV 477 (592)
T ss_pred ccccCccccchHHHHHH---------HHhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCce
Confidence 66542 46677764331 233333333322222222 3333434443 38999999999999999999999
Q ss_pred EEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeC--CeEEEeccchhhhhcCchh
Q 005467 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDD--GRIIEVGNHAELLHKGRLY 683 (695)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~--G~Ive~Gth~eLl~~~g~Y 683 (695)
.+.|||.+-||++.....-+.+.+..- ..++|-.+|-|++-..- .|||++|.+. +...-.-.+..|+.....+
T Consensus 478 YliDEpsAylDSeQRi~AskvikRfil--hakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~gmN~f 553 (592)
T KOG0063|consen 478 YLIDEPSAYLDSEQRIIASKVIKRFIL--HAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLAGMNRF 553 (592)
T ss_pred EEecCchhhcChHHHHHHHHHHHHHHH--hccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHHHhHHH
Confidence 999999999999877655555555431 24689999999987664 5999999985 3333333445555443333
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6e-13 Score=134.73 Aligned_cols=144 Identities=24% Similarity=0.320 Sum_probs=90.8
Q ss_pred EEEEEeecCCChhhHH-HHHHhhhcC-----------------CCceEEEcCccCCcc-hhHHHHhhhccccCC-ceee-
Q 005467 480 VVAIVGLSGSGKSTFV-NLLLRLYEP-----------------SDGQIYIDGFPLTDL-DIRWLREKIGFVGQE-PQLL- 538 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl-~LL~rly~p-----------------~~G~I~idG~di~~i-~~~~lR~~I~~V~Qd-~~LF- 538 (695)
+++|+|++|||||||+ +++.|.+++ ..|.+.+++.|...- ....+| .+++.+. ..++
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~--~~~~~~~~~~i~v 88 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR--DGYYIKGQCAIIM 88 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHhccCCEEEEE
Confidence 6999999999999999 688888764 568888888877532 122222 2333332 3333
Q ss_pred -eee-----------------cccccc---ccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCc--cch
Q 005467 539 -QMD-----------------IKSNIM---YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGG--QKQ 594 (695)
Q Consensus 539 -~~T-----------------I~eNI~---~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGG--QkQ 594 (695)
+.| ..+|+. .|+.-|..+.++. .+.. ++.... +.. .-| ...||+ |+|
T Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~--~~~~---~~~~~~--~~~--~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 89 FDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVK--ARQI---TFHRKK--NLQ--YYDISAKSNYNFEKP 159 (215)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCC--HHHH---HHHHHc--CCE--EEEEeCCCCCCHHHH
Confidence 333 224542 3322222121111 1111 122221 111 112 234444 899
Q ss_pred hHHHHHHhhcCCcEEEEeccc-----cccCcccchhhhhHHHhhh
Q 005467 595 RIAIARAILRDPAILLLDEAT-----SALDSESEHYVKGVLHALR 634 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaT-----SaLD~~tE~~I~~~L~~~~ 634 (695)
++.|||+++.+|++++||||| ++||+.+.+.+.+.++++.
T Consensus 160 f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 160 FLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 999999999999999999999 9999999999999998873
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.29 E-value=6e-12 Score=127.47 Aligned_cols=141 Identities=17% Similarity=0.197 Sum_probs=90.0
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh--hhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 543 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r--ly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~ 543 (695)
.|=+|+++.=..+.+++|+||+|+||||+++.+.. .. ++.|...... .-.+++..|...-+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l----- 79 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRM----- 79 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeee-----
Confidence 45566666422237899999999999999999984 33 5667655432 11355555543211
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccc
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE 623 (695)
+. ++.+.. +...|-. +-||+++|+++..+|++++||||++++|+...
T Consensus 80 -----~~-----~~si~~-----~~S~f~~------------------el~~l~~~l~~~~~~slvllDE~~~gtd~~~~ 126 (213)
T cd03281 80 -----SS-----RESVSS-----GQSAFMI------------------DLYQVSKALRLATRRSLVLIDEFGKGTDTEDG 126 (213)
T ss_pred -----CC-----ccChhh-----ccchHHH------------------HHHHHHHHHHhCCCCcEEEeccccCCCCHHHH
Confidence 10 111111 0112222 34899999999999999999999999998754
Q ss_pred hhh-hhHHHhhhccccCcceEEEEeeeccccccc
Q 005467 624 HYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKAV 656 (695)
Q Consensus 624 ~~I-~~~L~~~~~~~~~~~TvIiIaHrlsti~~a 656 (695)
..+ .+.++.+.+....+.++|++||.++.++..
T Consensus 127 ~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 127 AGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 333 455666532101135899999999887654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-12 Score=126.80 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=50.6
Q ss_pred cccCCccchhHHHHHHhhc--CCcEEEEeccccccCcccchhhhhH-HHhhhccccCcceEEEEeeecccccccCe
Q 005467 586 DLLSGGQKQRIAIARAILR--DPAILLLDEATSALDSESEHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKAVDR 658 (695)
Q Consensus 586 ~~LSGGQkQRIaIARAll~--~p~ILILDEaTSaLD~~tE~~I~~~-L~~~~~~~~~~~TvIiIaHrlsti~~aD~ 658 (695)
+.+|+|++| +++++.. +|+++++||||+++|+.....+... ++.+.+ ..+.++|++||..+..+.+|+
T Consensus 60 s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~--~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 60 STFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE--KIGALTLFATHYHELTKLADE 130 (185)
T ss_pred cHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHHHhhc
Confidence 367887776 5555555 9999999999999999977776544 444432 136899999999976666774
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.4e-12 Score=146.40 Aligned_cols=76 Identities=18% Similarity=0.330 Sum_probs=70.3
Q ss_pred ccCCccchhHHHHHHhhcC----CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 587 LLSGGQKQRIAIARAILRD----PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~----p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
.+||||+||++|||+++.. |++|||||||++||..+...+.+.|.++. +++|||+|||++..+..||++++|
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~----~~~~vi~iTH~~~~~~~ad~~~~l 515 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS----ERHQVLCVTHLPQVAAHADAHFKV 515 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----cCCEEEEEEChHHHHHhcCeEEEE
Confidence 6899999999999999975 69999999999999999999999999874 358999999999999999999999
Q ss_pred eCCe
Q 005467 663 DDGR 666 (695)
Q Consensus 663 ~~G~ 666 (695)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 9875
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.2e-11 Score=128.91 Aligned_cols=108 Identities=15% Similarity=0.182 Sum_probs=78.9
Q ss_pred HHHhhcchhhHHHhhccCCcccccccccccccccceEEEEEEeeecCCCCccceee-----------eeeeEeecCcEEE
Q 005467 414 LLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN-----------HVCLTIEANEVVA 482 (695)
Q Consensus 414 ~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~-----------~isl~I~~Ge~vA 482 (695)
..+.-.+.+|++++++.++.+.. .+....+.++|+||+|.||+. +.+|+ |+++.|.+||+++
T Consensus 100 ~~R~~~~~ER~~~Ll~v~~vn~~-----~~e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~ 172 (415)
T TIGR00767 100 QIRSPKEGERYFALLKVESVNGD-----DPEKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGL 172 (415)
T ss_pred EEeccccHhHHHHHhCCCccCCC-----CccccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEE
Confidence 33455678999999998775322 122345789999999999864 47997 9999999999999
Q ss_pred EEeecCCChhhHHHHHHhhhcCCC--ceEEEcCccCCcchhHHHHhhh
Q 005467 483 IVGLSGSGKSTFVNLLLRLYEPSD--GQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 483 IVG~SGSGKSTLl~LL~rly~p~~--G~I~idG~di~~i~~~~lR~~I 528 (695)
||||+|||||||++++.+.+.... ..+.+--.+=+..+..++.+.+
T Consensus 173 IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsI 220 (415)
T TIGR00767 173 IVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSV 220 (415)
T ss_pred EECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHh
Confidence 999999999999999999987541 2333322222224555555554
|
Members of this family differ in the specificity of RNA binding. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.5e-11 Score=138.18 Aligned_cols=157 Identities=29% Similarity=0.402 Sum_probs=117.0
Q ss_pred CCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhH-HHHHHHh-hHhHhHhcCCCCcccc
Q 005467 505 SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI-EWAAKQA-YVHEFILSLPCGYETL 582 (695)
Q Consensus 505 ~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei-~~A~~~a-~l~~fI~~LP~G~dT~ 582 (695)
+.=.|+|+|.+|.++..-++++..-+. +|+.++.. +.++ ...++.. .--+|+...--||=|.
T Consensus 412 eal~v~i~g~~i~e~~~msi~~~~~f~------------~~l~l~~~----~~~ia~~ilkei~~RL~fL~~VGL~YLtL 475 (935)
T COG0178 412 EALAVKIAGKNIAEISEMSIADALEFF------------ENLKLSEK----EKKIAEPILKEIKERLGFLVDVGLGYLTL 475 (935)
T ss_pred hhheeEECCccHHHHhhccHHHHHHHH------------HhCCCchh----hHHHHHHHHHHHHHHHHHHHHcCcCcccc
Confidence 334689999988888776666555442 33333311 1111 1122111 1124566666667666
Q ss_pred ccc-cccCCccchhHHHHHHhhcC--CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeE
Q 005467 583 VDD-DLLSGGQKQRIAIARAILRD--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 659 (695)
Q Consensus 583 vge-~~LSGGQkQRIaIARAll~~--p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~I 659 (695)
=-+ ..|||||.|||-||+.+-.+ -=+.|||||+.+|-+.--+++.++|.+++. .|.|+|+|-|+..+++.||+|
T Consensus 476 ~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRD---lGNTviVVEHDedti~~AD~i 552 (935)
T COG0178 476 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD---LGNTVIVVEHDEDTIRAADHI 552 (935)
T ss_pred cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHh---cCCeEEEEecCHHHHhhcCEE
Confidence 544 48999999999999999987 568899999999999877888889998863 478999999999999999999
Q ss_pred EEe------eCCeEEEeccchhhhhcC
Q 005467 660 VVI------DDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 660 vvL------~~G~Ive~Gth~eLl~~~ 680 (695)
+=| ..|+|+.+|+++|++++.
T Consensus 553 IDiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 553 IDIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred EeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 988 479999999999999976
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-11 Score=142.10 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=69.8
Q ss_pred ccCCccchhHHHHHHhhc----CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 587 LLSGGQKQRIAIARAILR----DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~----~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
.+||||+||++|||+++. +|+++||||||++||..+...+.+.|.++. +++|+|+|||++.....||+++++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~----~~~qvi~iTH~~~~~~~ad~~~~v 505 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG----ESTQVMCVTHLPQVAGCGHQHFFV 505 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----cCCEEEEEecCHHHHHhCCEEEEE
Confidence 489999999999999996 689999999999999999999999999884 358999999999999999999999
Q ss_pred eCCe
Q 005467 663 DDGR 666 (695)
Q Consensus 663 ~~G~ 666 (695)
+++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 9864
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-11 Score=142.21 Aligned_cols=145 Identities=21% Similarity=0.269 Sum_probs=97.1
Q ss_pred eEEEEEEeeecCCCCccceeee-----eeeEeecC-cEEEEEeecCCChhhHHHHHHhh-hcCCCceEEEcCccCCcchh
Q 005467 449 HVQFVNISFHYPSRPTVPILNH-----VCLTIEAN-EVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDI 521 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~-----isl~I~~G-e~vAIVG~SGSGKSTLl~LL~rl-y~p~~G~I~idG~di~~i~~ 521 (695)
.|.++|+.. |++++ +|+++.+| ++++|+||||+||||++|.+.+. +-++.|
T Consensus 295 ~i~l~~~rh--------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G-------------- 352 (771)
T TIGR01069 295 KIILENARH--------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG-------------- 352 (771)
T ss_pred CEEEccccC--------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC--------------
Confidence 466766543 34443 78888887 89999999999999999999987 333333
Q ss_pred HHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 522 RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 522 ~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
.+||.+... .-.+.+++.. +..+++ .+ -+++ ..+|+|++|+..|+++
T Consensus 353 -------~~Vpa~~~~-~~~~~d~i~~----~i~~~~------------si---~~~L------StfS~~m~~~~~il~~ 399 (771)
T TIGR01069 353 -------IPIPANEHS-EIPYFEEIFA----DIGDEQ------------SI---EQNL------STFSGHMKNISAILSK 399 (771)
T ss_pred -------CCccCCccc-cccchhheee----ecChHh------------HH---hhhh------hHHHHHHHHHHHHHHh
Confidence 145554310 0012223221 111110 01 1111 3589999999999998
Q ss_pred hhcCCcEEEEeccccccCcccchhhhh-HHHhhhccccCcceEEEEeeeccc
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKG-VLHALRNDCKTKRTVIVIAHRLST 652 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~-~L~~~~~~~~~~~TvIiIaHrlst 652 (695)
+ .+|+++|||||++++|+..-..+.. .++.+.+ .|.++|++||..+.
T Consensus 400 ~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~---~g~~viitTH~~eL 447 (771)
T TIGR01069 400 T-TENSLVLFDELGAGTDPDEGSALAISILEYLLK---QNAQVLITTHYKEL 447 (771)
T ss_pred c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh---cCCEEEEECChHHH
Confidence 7 7899999999999999998888744 4444432 46899999998765
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.7e-11 Score=140.34 Aligned_cols=172 Identities=13% Similarity=0.113 Sum_probs=111.6
Q ss_pred hhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhH-----HHHHHHhhcchhhhccccccceeehhhhhhhheehh
Q 005467 298 ASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY-----KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMA 372 (695)
Q Consensus 298 ~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 372 (695)
.........+..++.+.|.+.++.+||..+.|......| .....+..+.+.+..............+......++
T Consensus 31 ~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~i 110 (644)
T PRK10733 31 KVDYSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPML 110 (644)
T ss_pred cCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHH
Confidence 333344444567888899999999999999998776666 555555555555544333333223333333445667
Q ss_pred eeecceeeeccccChh---hhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccccccccccccce
Q 005467 373 VLLGGMSIMIGQVSPE---QLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGH 449 (695)
Q Consensus 373 l~~g~~~v~~g~is~G---~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~~~~~ 449 (695)
+++|+++++.|+++.| .+++|..+...+..+ ..+...+.++...-.+.+|+.++.+...+..
T Consensus 111 l~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~-------------- 175 (644)
T PRK10733 111 LLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPS-------------- 175 (644)
T ss_pred HHHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH--------------
Confidence 8899999999999998 788887776666655 4444455555444445556655554321100
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
..+++..++++| ++|+||+|+||||+++.+++-..
T Consensus 176 -----------------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 176 -----------------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred -----------------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 011222356677 99999999999999999988653
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-10 Score=117.36 Aligned_cols=139 Identities=17% Similarity=0.208 Sum_probs=84.5
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh-hhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeee-eec
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDI 542 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r-ly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-~TI 542 (695)
+.+.+|++|++++|++++|.||+|+||||+++.+.+ .+.++.|...... . -.+++..| +|. ...
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~----------~~~~~~~~---i~~~~~~ 83 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S----------ATLSIFDS---VLTRMGA 83 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c----------eEEeccce---EEEEecC
Confidence 468999999999999999999999999999999999 7788888765432 1 12333222 221 122
Q ss_pred cccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCccc
Q 005467 543 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622 (695)
Q Consensus 543 ~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~t 622 (695)
.|++.-| . . --..+...+++.++ -..+|+++|||||.++.|+..
T Consensus 84 ~d~~~~~-~-S------tF~~e~~~~~~il~----------------------------~~~~~sLvllDE~~~gT~~~d 127 (222)
T cd03287 84 SDSIQHG-M-S------TFMVELSETSHILS----------------------------NCTSRSLVILDELGRGTSTHD 127 (222)
T ss_pred ccccccc-c-c------hHHHHHHHHHHHHH----------------------------hCCCCeEEEEccCCCCCChhh
Confidence 3333211 0 0 00111222222111 124799999999866666544
Q ss_pred chhhh-hHHHhhhccccCcceEEEEeeecccccc
Q 005467 623 EHYVK-GVLHALRNDCKTKRTVIVIAHRLSTIKA 655 (695)
Q Consensus 623 E~~I~-~~L~~~~~~~~~~~TvIiIaHrlsti~~ 655 (695)
...+. ..++.+.+ ..++|+|++||+++....
T Consensus 128 ~~~i~~~il~~l~~--~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 128 GIAIAYATLHYLLE--EKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHHHHHHHHHh--ccCCeEEEEcccHHHHHH
Confidence 44432 23333322 135899999999887543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-11 Score=118.88 Aligned_cols=90 Identities=18% Similarity=0.237 Sum_probs=67.0
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEecc--ccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEA--TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEa--TSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
.+||+++-++.+++..+++|+++++||+ +..+|... .+.+.+..+ .++++|+++|+-..-..+|+|..+.+
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~----~~~l~~~~~---~~~~~i~v~h~~~~~~~~~~i~~~~~ 150 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKF----VKAVEEVLD---SEKPVIATLHRRSVHPFVQEIKSRPG 150 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHH----HHHHHHHHh---CCCeEEEEECchhhHHHHHHHhccCC
Confidence 6999999999999999999999999995 44555443 444444432 35899999999665567999999999
Q ss_pred CeEEEeccchhhhhcCchhHHHH
Q 005467 665 GRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 665 G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
|+|.+.- ...++..|.+..
T Consensus 151 ~~i~~~~----~~~r~~~~~~~~ 169 (174)
T PRK13695 151 GRVYELT----PENRDSLPFEIL 169 (174)
T ss_pred cEEEEEc----chhhhhHHHHHH
Confidence 9998762 223444555443
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-10 Score=123.79 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=60.4
Q ss_pred ccCCccchhHHHHHHhh---------cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccC
Q 005467 587 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD 657 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll---------~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD 657 (695)
-+|+||++++++|+.+. .+|++++||||+|.||......+.+.|.+. .. ++|| -.+.-..+|
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~------~q--~~it-~t~~~~~~~ 333 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL------PQ--AIVA-GTEAPPGAA 333 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC------Cc--EEEE-cCCCCCCCc
Confidence 48999999999999998 899999999999999999988887777543 12 3444 122335699
Q ss_pred eEEEeeCCeEEEec
Q 005467 658 RIVVIDDGRIIEVG 671 (695)
Q Consensus 658 ~IvvL~~G~Ive~G 671 (695)
+++.+++|++..+.
T Consensus 334 ~~~~~~~~~~~~~~ 347 (349)
T PRK14079 334 LTLRIEAGVFTPEA 347 (349)
T ss_pred eEEEEeccEecCCC
Confidence 99999999886543
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.4e-10 Score=113.17 Aligned_cols=156 Identities=13% Similarity=0.250 Sum_probs=91.5
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhH-HHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTF-VNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL-l~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
|..+++...+++ -+++|+.+.|+|++||||||+ .+++.++.++.+..+++...+ +.+++.+++
T Consensus 8 ~~~~~ld~~l~g------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~----~~~~~~~~~ 71 (230)
T PRK08533 8 LSRDELHKRLGG------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL----TTTEFIKQM 71 (230)
T ss_pred EEEeeeehhhCC------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----CHHHHHHHH
Confidence 556666665543 279999999999999999999 699999987666666665422 223333322
Q ss_pred ---ccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh--
Q 005467 529 ---GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL-- 603 (695)
Q Consensus 529 ---~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll-- 603 (695)
|+-.++ ..-. +++.+- .- ...+|+++.++-.++|.+-
T Consensus 72 ~~~g~~~~~-~~~~----~~l~~~-----------------------~~----------~~~~~~~~~~~~~l~~il~~~ 113 (230)
T PRK08533 72 MSLGYDINK-KLIS----GKLLYI-----------------------PV----------YPLLSGNSEKRKFLKKLMNTR 113 (230)
T ss_pred HHhCCchHH-Hhhc----CcEEEE-----------------------Ee----------cccccChHHHHHHHHHHHHHH
Confidence 221110 0000 011000 00 0124555544444444333
Q ss_pred --cCCcEEEEecccccc----CcccchhhhhHHHhhhccccCcceEEEEeeeccc--------ccc-cCeEEEee
Q 005467 604 --RDPAILLLDEATSAL----DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--------IKA-VDRIVVID 663 (695)
Q Consensus 604 --~~p~ILILDEaTSaL----D~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst--------i~~-aD~IvvL~ 663 (695)
.+|+++++||||+.+ |+...+.+.+.++.+.+ .|+|+++ ||+... ++. ||-|+.|+
T Consensus 114 ~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~---~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 114 RFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS---LNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh---CCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 369999999999999 55555667777766643 3566554 565443 222 78888887
|
|
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.2e-11 Score=131.53 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=56.8
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCc-eEEEcCccCCcchhHHHHhhhccccCCc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEP 535 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G-~I~idG~di~~i~~~~lR~~I~~V~Qd~ 535 (695)
.+|++|||+|++||+++|+||||||||||++ .++.+|++| +|.+||+++...+...++..= +|.|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 5899999999999999999999999999999 677778888 799999999876655443322 888865
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.9e-11 Score=125.59 Aligned_cols=147 Identities=16% Similarity=0.221 Sum_probs=102.3
Q ss_pred eeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccc
Q 005467 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 548 (695)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~ 548 (695)
+=+++.+++|+.++|+||+||||||+++.|+++++|..|.+.++ |..++.... ++...++.
T Consensus 135 ~~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~--------~~~~~l~~--------- 195 (308)
T TIGR02788 135 EFLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH--------PNYVHLFY--------- 195 (308)
T ss_pred HHHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC--------CCEEEEEe---------
Confidence 34678899999999999999999999999999999999988885 333433221 11111110
Q ss_pred cCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhh
Q 005467 549 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 628 (695)
Q Consensus 549 g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~ 628 (695)
. . . ++ | +++-...=++++++-.+|+++++||+.+ .++.+
T Consensus 196 ~-~-~--~~--------------------~----------~~~~~~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~ 234 (308)
T TIGR02788 196 S-K-G--GQ--------------------G----------LAKVTPKDLLQSCLRMRPDRIILGELRG-------DEAFD 234 (308)
T ss_pred c-C-C--CC--------------------C----------cCccCHHHHHHHHhcCCCCeEEEeccCC-------HHHHH
Confidence 0 0 0 00 0 0011112246667888999999999996 23345
Q ss_pred HHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhh
Q 005467 629 VLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 629 ~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
.++....+ ..+++...|..+.....||+..|..|++...|..+|.+.
T Consensus 235 ~l~a~~~g---~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 235 FIRAVNTG---HPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred HHHHHhcC---CCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHHH
Confidence 55555322 346799999999888899999999999999998888873
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.4e-10 Score=133.38 Aligned_cols=83 Identities=22% Similarity=0.316 Sum_probs=69.2
Q ss_pred ccCCccchhHHHHHHh----------------------hcCCcEEEEecccccc-CcccchhhhhHHHhhhccccCcceE
Q 005467 587 LLSGGQKQRIAIARAI----------------------LRDPAILLLDEATSAL-DSESEHYVKGVLHALRNDCKTKRTV 643 (695)
Q Consensus 587 ~LSGGQkQRIaIARAl----------------------l~~p~ILILDEaTSaL-D~~tE~~I~~~L~~~~~~~~~~~Tv 643 (695)
+||+|+.|.+.+...+ ..+|+++++|||+++| |+...+.+.+.+++.++ .|.++
T Consensus 612 ~l~~~~~~~fdl~~Ll~~~~~~~~~vl~yl~~ri~~~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK---~~~~v 688 (818)
T PRK13830 612 GLALGAFQTFEIEELMNMGERNLVPVLTYLFRRIEKRLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK---ANCAV 688 (818)
T ss_pred ccCccceEEEEhhhhhcCchhHHHHHHHHHHHHHHHhcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH---cCCEE
Confidence 6888877776554433 5799999999999999 68899999999998864 36899
Q ss_pred EEEeeecccc----------cccCeEEEeeCCeEEEecc
Q 005467 644 IVIAHRLSTI----------KAVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 644 IiIaHrlsti----------~~aD~IvvL~~G~Ive~Gt 672 (695)
+++||+++.+ +.||+.++|.+|++.+.|+
T Consensus 689 il~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 689 VLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred EEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 9999999886 4799999999999877764
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-09 Score=105.87 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=56.4
Q ss_pred ccCCccch-----hHHHHHH-hhcCCcEEEEeccccccC---cccchhhhhHHHhhhccccCcceEEEEeeeccc-----
Q 005467 587 LLSGGQKQ-----RIAIARA-ILRDPAILLLDEATSALD---SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST----- 652 (695)
Q Consensus 587 ~LSGGQkQ-----RIaIARA-ll~~p~ILILDEaTSaLD---~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst----- 652 (695)
.+|+||+| +..+.++ .-.+|+++|+||+|+.+| ......+.+.+..+++ .|.|+|+++|....
T Consensus 71 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~---~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 71 EIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR---FGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH---CCCEEEEEeccccCCCccc
Confidence 68999999 3444444 456899999999999999 5556666666666543 37899999998764
Q ss_pred ----cc-ccCeEEEee
Q 005467 653 ----IK-AVDRIVVID 663 (695)
Q Consensus 653 ----i~-~aD~IvvL~ 663 (695)
+. -||.|+.|+
T Consensus 148 ~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 148 GGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcCceeEeeeEEEEEE
Confidence 44 499999998
|
A related protein is found in archaea. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-10 Score=121.50 Aligned_cols=172 Identities=24% Similarity=0.301 Sum_probs=111.5
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccc----cCCceeeeeeccccccccCC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV----GQEPQLLQMDIKSNIMYGCP 551 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V----~Qd~~LF~~TI~eNI~~g~~ 551 (695)
.||+..++||.+|-||||-++.|+|-.+|.-|.-- ++ ..|..-++|- .|.- |..-+.||+.--..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~p--------p~w~~il~~frgselq~y--ftk~le~~lk~~~k 166 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NP--------PDWQEILTYFRGSELQNY--FTKILEDNLKAIIK 166 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CC--------cchHHHhhhhhhHHHhhh--hhhhccccccCcCC
Confidence 47999999999999999999999999999877531 12 2233333331 1111 22334444432211
Q ss_pred cCCCchhHHHHHHHhhHhHhHhcCCC-Cccccc-----------cc-cccCCccchhHHHHHHhhcCCcEEEEecccccc
Q 005467 552 KDVKNEDIEWAAKQAYVHEFILSLPC-GYETLV-----------DD-DLLSGGQKQRIAIARAILRDPAILLLDEATSAL 618 (695)
Q Consensus 552 ~~~~~eei~~A~~~a~l~~fI~~LP~-G~dT~v-----------ge-~~LSGGQkQRIaIARAll~~p~ILILDEaTSaL 618 (695)
+. --+++-+|++.+ +.+.+.+.-+ +..+.+ -| +.||||+-||.|||-+...++++.++|||.|-|
T Consensus 167 pQ-yvd~ipr~~k~~-v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYL 244 (592)
T KOG0063|consen 167 PQ-YVDQIPRAVKGT-VGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYL 244 (592)
T ss_pred hH-HHHHHHHHHHHH-HHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccc
Confidence 10 012333343332 1222221111 111111 12 279999999999999999999999999999999
Q ss_pred CcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEee
Q 005467 619 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVID 663 (695)
Q Consensus 619 D~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~ 663 (695)
|.+-...--.+++.+. ..++=+|+|-|+||.+.. .|-|.++-
T Consensus 245 DVKQRLkaA~~IRsl~---~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 245 DVKQRLKAAITIRSLI---NPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred hHHHhhhHHHHHHHhh---CCCCeEEEEEeechHHHhhhcceeEEe
Confidence 9987776666677664 346899999999999864 77777664
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.4e-10 Score=133.49 Aligned_cols=144 Identities=18% Similarity=0.213 Sum_probs=94.7
Q ss_pred eeEeec-CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc-cccCCceeeeeecccccccc
Q 005467 472 CLTIEA-NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG-FVGQEPQLLQMDIKSNIMYG 549 (695)
Q Consensus 472 sl~I~~-Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~-~V~Qd~~LF~~TI~eNI~~g 549 (695)
++++.+ +..+.|.||+++||||+++.+.-. .+-.++| +||-+.. ..-++.++|...
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~---------------------~~maq~G~~vpa~~~-~~i~~~~~i~~~ 377 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLA---------------------ALMAKSGLPIPANEP-SEIPVFKEIFAD 377 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHH---------------------HHHHHhCCCcccCCC-ccccccceEEEe
Confidence 444443 567999999999999999999522 2233455 5665521 112344454321
Q ss_pred CCcCCCc-hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhh
Q 005467 550 CPKDVKN-EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKG 628 (695)
Q Consensus 550 ~~~~~~~-eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~ 628 (695)
..+ +.+. .+ -+.+|+|++|+..|+|++ .+|++++||||++++|+.....+..
T Consensus 378 ----ig~~~si~----------------~~------lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~ 430 (782)
T PRK00409 378 ----IGDEQSIE----------------QS------LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAI 430 (782)
T ss_pred ----cCCccchh----------------hc------hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHH
Confidence 111 1111 11 136899999999999999 8999999999999999998887765
Q ss_pred H-HHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE
Q 005467 629 V-LHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII 668 (695)
Q Consensus 629 ~-L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv 668 (695)
+ ++.+.+ .+.++|++||..+.... +|+..+ .++.+.
T Consensus 431 aile~l~~---~~~~vIitTH~~el~~~~~~~~~v-~~~~~~ 468 (782)
T PRK00409 431 SILEYLRK---RGAKIIATTHYKELKALMYNREGV-ENASVE 468 (782)
T ss_pred HHHHHHHH---CCCEEEEECChHHHHHHHhcCCCe-EEEEEE
Confidence 5 444422 36899999999887655 444433 345543
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.9e-10 Score=137.49 Aligned_cols=76 Identities=28% Similarity=0.448 Sum_probs=65.9
Q ss_pred ccCCccchhHHH------HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCc-ceEEEEeeecccccccCeE
Q 005467 587 LLSGGQKQRIAI------ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTK-RTVIVIAHRLSTIKAVDRI 659 (695)
Q Consensus 587 ~LSGGQkQRIaI------ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~-~TvIiIaHrlsti~~aD~I 659 (695)
.|||||+||+|| ||+++.+|++++|||||++||+.+...+.+.+...... ..+ .|+|+|||+...+..||+|
T Consensus 801 ~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~-~~~~~~ii~ish~~~~~~~~d~i 879 (895)
T PRK01156 801 SLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKD-SSDIPQVIMISHHRELLSVADVA 879 (895)
T ss_pred cCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEECchHHHHhcCeE
Confidence 799999999975 59999999999999999999999999888888754321 122 5899999999999999999
Q ss_pred EEee
Q 005467 660 VVID 663 (695)
Q Consensus 660 vvL~ 663 (695)
+.++
T Consensus 880 i~~~ 883 (895)
T PRK01156 880 YEVK 883 (895)
T ss_pred EEEE
Confidence 9998
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.8e-10 Score=137.40 Aligned_cols=75 Identities=25% Similarity=0.414 Sum_probs=66.4
Q ss_pred ccCCccch------hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEE
Q 005467 587 LLSGGQKQ------RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 660 (695)
Q Consensus 587 ~LSGGQkQ------RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~Iv 660 (695)
.|||||+| |+||||++..+|+++||||||++||+.....+.+.|..+.+ .+.|+|+|||+......||+++
T Consensus 788 ~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~---~~~~iiiith~~~~~~~~d~~~ 864 (880)
T PRK03918 788 FLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR---KIPQVIIVSHDEELKDAADYVI 864 (880)
T ss_pred hCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHhCCeEE
Confidence 79999999 56677789999999999999999999999999999887643 2479999999999888899999
Q ss_pred EeeC
Q 005467 661 VIDD 664 (695)
Q Consensus 661 vL~~ 664 (695)
+|++
T Consensus 865 ~l~~ 868 (880)
T PRK03918 865 RVSL 868 (880)
T ss_pred EEEe
Confidence 9984
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.2e-10 Score=138.95 Aligned_cols=76 Identities=26% Similarity=0.344 Sum_probs=69.1
Q ss_pred ccCCccchhHHHHHHhhc----------CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-
Q 005467 587 LLSGGQKQRIAIARAILR----------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA- 655 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~----------~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~- 655 (695)
.|||||++|++||+||.. +|++|||||||++||+++...+.++|.++.. .|+||++|||.......
T Consensus 950 ~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~---~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 950 TLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE---GSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCcHHHHHhh
Confidence 799999999999999985 7999999999999999999999999998853 47899999999998754
Q ss_pred cCeEEEeeCC
Q 005467 656 VDRIVVIDDG 665 (695)
Q Consensus 656 aD~IvvL~~G 665 (695)
+|+|.|++.|
T Consensus 1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618 1027 PHRILVKKTN 1036 (1042)
T ss_pred CCEEEEEECC
Confidence 9999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.4e-09 Score=99.65 Aligned_cols=130 Identities=18% Similarity=0.114 Sum_probs=77.4
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhH
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 559 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei 559 (695)
+++|.||+|+||||+++.+++...+..|.|.+-+.+...-+ .+....... .....+|+.+- ....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~---~~~~~~~~~------~~~~~~~~~~~-~~~~----- 65 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE---LTERLIGES------LKGALDNLIIV-FATA----- 65 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH---HHHHHhhhh------hccccccEEEE-EcCC-----
Confidence 37899999999999999999999888888877665432211 111110000 00001111111 0000
Q ss_pred HHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCccc----------chhhhhH
Q 005467 560 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES----------EHYVKGV 629 (695)
Q Consensus 560 ~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~t----------E~~I~~~ 629 (695)
..-+.++.++++.+++...+|+++|+||+++-+|... .+.+.+.
T Consensus 66 --------------------------~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l 119 (165)
T cd01120 66 --------------------------DDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELREL 119 (165)
T ss_pred --------------------------CCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 0112233347788999999999999999997766543 2333333
Q ss_pred HHhhhccccCcceEEEEeeecccc
Q 005467 630 LHALRNDCKTKRTVIVIAHRLSTI 653 (695)
Q Consensus 630 L~~~~~~~~~~~TvIiIaHrlsti 653 (695)
+... + ..+.|+++++|.....
T Consensus 120 ~~~~-~--~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 120 LERA-R--KGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHH-h--cCCceEEEEEecCCcc
Confidence 3333 2 2478999999987554
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-09 Score=110.00 Aligned_cols=78 Identities=28% Similarity=0.364 Sum_probs=65.5
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc------------CCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 543 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~------------p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~ 543 (695)
+||++++|+||||||||||+++|++.++ |..|+ ++|.|+..++.+.+++.+ .|+.+++.+++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999999996 88899 599999999998888754 588899999999
Q ss_pred ccccccCCcCCCchhHHHHH
Q 005467 544 SNIMYGCPKDVKNEDIEWAA 563 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~ 563 (695)
+| .||. ..+.+..++
T Consensus 78 ~~-~y~~----~~~~i~~~l 92 (205)
T PRK00300 78 GN-YYGT----PRSPVEEAL 92 (205)
T ss_pred Cc-cccC----cHHHHHHHH
Confidence 99 4762 344454444
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.2e-09 Score=107.54 Aligned_cols=157 Identities=15% Similarity=0.201 Sum_probs=89.7
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcC
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 553 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~ 553 (695)
=+++|..+.|.|++||||||+...++--.-...+.+++-..+ -+++++.++..-.. -.+.+.+..|
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e---~~~~~~~~~~~~~g-------~~~~~~~~~g---- 86 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE---NTSKSYLKQMESVK-------IDISDFFLWG---- 86 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC---CCHHHHHHHHHHCC-------CChhHHHhCC----
Confidence 489999999999999999999988753221234455443321 12223322211000 0011111000
Q ss_pred CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc--CCcEEEEeccccccCcccchhhhhHHH
Q 005467 554 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR--DPAILLLDEATSALDSESEHYVKGVLH 631 (695)
Q Consensus 554 ~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~--~p~ILILDEaTSaLD~~tE~~I~~~L~ 631 (695)
.-.++..-|.++ ...|.++++.+..++..++ +|+++|+||+|+.+|......+.+.+.
T Consensus 87 --------------~l~i~~~~~~~~------~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~ 146 (234)
T PRK06067 87 --------------YLRIFPLNTEGF------EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT 146 (234)
T ss_pred --------------CceEEecccccc------ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH
Confidence 000000001111 1346788899999999998 899999999998877666555555433
Q ss_pred hhhccccCcceEEEEeeeccc-------cc-ccCeEEEeeC
Q 005467 632 ALRNDCKTKRTVIVIAHRLST-------IK-AVDRIVVIDD 664 (695)
Q Consensus 632 ~~~~~~~~~~TvIiIaHrlst-------i~-~aD~IvvL~~ 664 (695)
.+..-..+++|+++++|.... +. -+|-++.|+.
T Consensus 147 ~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 147 EAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 322111346899999997653 22 2677777763
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.2e-10 Score=138.16 Aligned_cols=72 Identities=28% Similarity=0.456 Sum_probs=65.1
Q ss_pred ccCCccchhHHHHHHh----hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 587 LLSGGQKQRIAIARAI----LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 587 ~LSGGQkQRIaIARAl----l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
.||||||||++|||++ +++|+++||||||++||+.+...+.+.|..+.+ +.|+|+|||++..+..||+++.+
T Consensus 1089 ~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~----~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1089 LLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK----NTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred ccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc----CCEEEEEEcChhHHHHhhhHeee
Confidence 7999999999999998 578899999999999999999999999988733 47899999999999899999754
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-09 Score=116.10 Aligned_cols=168 Identities=17% Similarity=0.205 Sum_probs=114.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.++-++++-.|.. +..+++++ |++.+||+++|+|++|+|||||++.|+|..+|+.|.|.+.|+.-++... .+++.
T Consensus 130 ~~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ev~e-~~~~~- 204 (432)
T PRK06793 130 AFEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKD-FIRKE- 204 (432)
T ss_pred chheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcccHHH-HHHHH-
Confidence 3566777777753 24588885 9999999999999999999999999999999999888777755433221 11110
Q ss_pred ccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccc-ccccccCCccchhHHHHHHhh----
Q 005467 529 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL-VDDDLLSGGQKQRIAIARAIL---- 603 (695)
Q Consensus 529 ~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~-vge~~LSGGQkQRIaIARAll---- 603 (695)
++ ..+++ +-+. +.-.+-|.|+|+|.+.+.+..
T Consensus 205 -------------------l~---------------~~gl~---------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyf 241 (432)
T PRK06793 205 -------------------LG---------------EEGMR---------KSVVVVATSDESHLMQLRAAKLATSIAEYF 241 (432)
T ss_pred -------------------hh---------------hcccc---------eeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 00 00000 0001 122356889999998888877
Q ss_pred ---cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEecc
Q 005467 604 ---RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 604 ---~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gt 672 (695)
.++-+|++||+|...|+. ++|-.++.+.- ..|.|..+-+|-.+..++|-+ .++|.|...++
T Consensus 242 r~~G~~VLlilDslTr~a~A~--reisl~~~e~p---~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 242 RDQGNNVLLMMDSVTRFADAR--RSVDIAVKELP---IGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HHcCCcEEEEecchHHHHHHH--HHHHHHhcCCC---CCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 689999999999999997 44544454442 146788888884444455554 47888865443
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-09 Score=109.43 Aligned_cols=119 Identities=27% Similarity=0.366 Sum_probs=76.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCC-CceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 558 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~-~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~ee 558 (695)
.+.|+||+||||||+++.|++.+++. .|.|..-+.++. +.... ..+++.|. + .| . + .+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~~---~~~~i~q~----------~--vg-~-~--~~- 61 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHES---KRSLINQR----------E--VG-L-D--TL- 61 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-ccccC---ccceeeec----------c--cC-C-C--cc-
Confidence 58999999999999999999999754 677766554432 11100 00111110 0 01 0 0 00
Q ss_pred HHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhcccc
Q 005467 559 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638 (695)
Q Consensus 559 i~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~ 638 (695)
.++ =++++|+..+|+++++||+. |.++ +..+++.. .
T Consensus 62 ----------------------------~~~------~~i~~aLr~~pd~ii~gEir---d~e~---~~~~l~~a----~ 97 (198)
T cd01131 62 ----------------------------SFE------NALKAALRQDPDVILVGEMR---DLET---IRLALTAA----E 97 (198)
T ss_pred ----------------------------CHH------HHHHHHhcCCcCEEEEcCCC---CHHH---HHHHHHHH----H
Confidence 011 14889999999999999996 4443 33444444 2
Q ss_pred CcceEEEEeeecccccccCeEEEee
Q 005467 639 TKRTVIVIAHRLSTIKAVDRIVVID 663 (695)
Q Consensus 639 ~~~TvIiIaHrlsti~~aD~IvvL~ 663 (695)
.|.+++.++|..+.....||++.|-
T Consensus 98 ~G~~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 98 TGHLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred cCCEEEEEecCCcHHHHHhHHHhhc
Confidence 4689999999999888888887663
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.5e-09 Score=104.33 Aligned_cols=139 Identities=16% Similarity=0.193 Sum_probs=85.9
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-CCceEEEcCccCCcchhHHHHhhhccccCCceeee-eec
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDI 542 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-~TI 542 (695)
+.|-+|++|++++|++++|.||+|+||||+++.+....-. +.|- .+ +-+ +..++++ ..+|. ..-
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~v---pa~--~~~i~~~---~~i~~~~~~ 82 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DV---PAK--SMRLSLV---DRIFTRIGA 82 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------cc---Ccc--ccEeccc---cEEEEecCc
Confidence 4689999999999999999999999999999998876422 1121 00 000 0112222 12232 233
Q ss_pred cccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCccc
Q 005467 543 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622 (695)
Q Consensus 543 ~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~t 622 (695)
.||+..|. ..- ..+...+++.++. ..+|.+++|||+.+++|+..
T Consensus 83 ~d~~~~~~--StF------~~e~~~~~~il~~----------------------------~~~~sLvLlDE~~~Gt~~~d 126 (218)
T cd03286 83 RDDIMKGE--STF------MVELSETANILRH----------------------------ATPDSLVILDELGRGTSTHD 126 (218)
T ss_pred ccccccCc--chH------HHHHHHHHHHHHh----------------------------CCCCeEEEEecccCCCCchH
Confidence 44443331 000 1112222222111 14689999999999999998
Q ss_pred chhhhhH-HHhhhccccCcceEEEEeeecccccc
Q 005467 623 EHYVKGV-LHALRNDCKTKRTVIVIAHRLSTIKA 655 (695)
Q Consensus 623 E~~I~~~-L~~~~~~~~~~~TvIiIaHrlsti~~ 655 (695)
...+..+ ++.+.+ ..+.++|++||..+....
T Consensus 127 g~~la~ail~~L~~--~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 127 GYAIAHAVLEYLVK--KVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHHHHHH--hcCCcEEEEeccHHHHHH
Confidence 8888887 555532 236899999999887654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.2e-09 Score=129.81 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=66.9
Q ss_pred ccCCccchhHHHHHHhh----cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 587 LLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
.||||||++++||+++. ++||++|||||+++||+.....+.+.|.+.. .+.++|+|||+..++..||+++.+
T Consensus 1074 ~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~----~~~~~i~~t~~~~~~~~~d~~~~~ 1149 (1164)
T TIGR02169 1074 AMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKA----GEAQFIVVSLRSPMIEYADRAIGV 1149 (1164)
T ss_pred hcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhc----CCCeEEEEECcHHHHHhcceeEeE
Confidence 79999999999999997 5789999999999999999999999998873 346899999999999999999877
Q ss_pred eC
Q 005467 663 DD 664 (695)
Q Consensus 663 ~~ 664 (695)
..
T Consensus 1150 ~~ 1151 (1164)
T TIGR02169 1150 TM 1151 (1164)
T ss_pred EE
Confidence 53
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.5e-09 Score=106.02 Aligned_cols=64 Identities=25% Similarity=0.383 Sum_probs=51.6
Q ss_pred ccCCccchhHHHHHHhhcCC---cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc
Q 005467 587 LLSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 653 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p---~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti 653 (695)
.+|.|+||.++|+-+++..+ .++++|||-++|++.....+.+.|.+..+ .+.-+|+.||.+..+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~---~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK---KNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG---GSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc---cCCEEEEeCccchhc
Confidence 56999999999999988776 89999999999999999999988877643 257899999998754
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.4e-09 Score=126.62 Aligned_cols=75 Identities=31% Similarity=0.301 Sum_probs=64.4
Q ss_pred ccCCccchhHHHHHHhhc--------CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cC
Q 005467 587 LLSGGQKQRIAIARAILR--------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VD 657 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~--------~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD 657 (695)
.|||||+||++|||||.. +|++|+|||||++||+++-..+++.|..+.+ .|+||++|||-...... ..
T Consensus 949 ~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~---~g~~v~iisH~~~l~~~i~~ 1025 (1047)
T PRK10246 949 TLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA---SGKTIGVISHVEAMKERIPV 1025 (1047)
T ss_pred cCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH---CCCEEEEEecHHHHHHhccc
Confidence 899999999999999995 8999999999999999999999999999853 47999999996665544 55
Q ss_pred eEEEeeC
Q 005467 658 RIVVIDD 664 (695)
Q Consensus 658 ~IvvL~~ 664 (695)
+|.|-..
T Consensus 1026 qi~V~k~ 1032 (1047)
T PRK10246 1026 QIKVKKI 1032 (1047)
T ss_pred eEEEEEC
Confidence 6666543
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-08 Score=124.00 Aligned_cols=77 Identities=30% Similarity=0.460 Sum_probs=66.4
Q ss_pred ccCCccch------hHHHHHHhhcC-----C-cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc
Q 005467 587 LLSGGQKQ------RIAIARAILRD-----P-AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 654 (695)
Q Consensus 587 ~LSGGQkQ------RIaIARAll~~-----p-~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~ 654 (695)
.||||||| |+|+||++..+ | +++||||||++||+.....+.+.|..+... ...++|+|||+...+.
T Consensus 781 ~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~--~~~qviiish~~~~~~ 858 (880)
T PRK02224 781 QLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRL--GVEQIVVVSHDDELVG 858 (880)
T ss_pred hcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhc--CCCeEEEEECChHHHH
Confidence 89999999 99999999864 2 679999999999999999999888876421 1248999999999999
Q ss_pred ccCeEEEeeCC
Q 005467 655 AVDRIVVIDDG 665 (695)
Q Consensus 655 ~aD~IvvL~~G 665 (695)
.||+++++++.
T Consensus 859 ~ad~~~~~~~~ 869 (880)
T PRK02224 859 AADDLVRVEKD 869 (880)
T ss_pred hcCeeEEeecC
Confidence 99999999754
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-08 Score=111.59 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=86.5
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc---CccCCcchhHHH
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID---GFPLTDLDIRWL 524 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id---G~di~~i~~~~l 524 (695)
+.++.++++..|... ..+++.++ +|.+||+++|+||||||||||++.|.|+.+|+.|.|.+. |.++.++..+.+
T Consensus 138 ~~~~r~~v~~~l~TG--i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 138 PAMTRARVETGLRTG--VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCeEeecceEEcCCC--cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 458999999999643 56899986 999999999999999999999999999999999999885 566665544443
Q ss_pred H----hhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccc
Q 005467 525 R----EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 584 (695)
Q Consensus 525 R----~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vg 584 (695)
+ +.|++|+|.. +..-+++..+--...+.|+... +|.|..+=
T Consensus 215 ~~~r~rtI~vV~qsd-----------------~~~~~r~~~~~~a~~iAEyfrd--~G~~Vll~ 259 (450)
T PRK06002 215 ADNLKKAVAVVATSD-----------------ESPMMRRLAPLTATAIAEYFRD--RGENVLLI 259 (450)
T ss_pred HHhhCCeEEEEEcCC-----------------CCHHHHHHHHHHHHHHHHHHHH--cCCCEEEe
Confidence 3 4677777654 1223555555555556677764 47777654
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-08 Score=114.97 Aligned_cols=157 Identities=11% Similarity=0.150 Sum_probs=96.5
Q ss_pred EeecCcEEEEEeecCCChhhHHHHH--HhhhcCCCceEEEcCccCCcchhHHHHh---hhccccCCceeeeeeccccccc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLL--LRLYEPSDGQIYIDGFPLTDLDIRWLRE---KIGFVGQEPQLLQMDIKSNIMY 548 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL--~rly~p~~G~I~idG~di~~i~~~~lR~---~I~~V~Qd~~LF~~TI~eNI~~ 548 (695)
=+++|..+.|.|++||||||+..-. .|.-++.+.-+++... -+++++++ .+|+-.|+..- .+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 3789999999999999999999865 4555555667777653 24444444 56666554320 122222
Q ss_pred cCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH--HHhhcCCcEEEEeccccccCcccchhh
Q 005467 549 GCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA--RAILRDPAILLLDEATSALDSESEHYV 626 (695)
Q Consensus 549 g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA--RAll~~p~ILILDEaTSaLD~~tE~~I 626 (695)
- .. .........++..++++++..++ ..+|+||+||+.|+ .++..+|+.. ....+.+
T Consensus 88 ~-~~-~~~~~~~~~~~~~~l~~~l~~i~---------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l 146 (484)
T TIGR02655 88 L-DA-SPDPEGQDVVGGFDLSALIERIN---------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREI 146 (484)
T ss_pred E-ec-CchhccccccccCCHHHHHHHHH---------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHH
Confidence 1 00 00111111223334444443332 36899999999999 6776665444 2445566
Q ss_pred hhHHHhhhccccCcceEEEEeeeccc--------c-c-ccCeEEEee
Q 005467 627 KGVLHALRNDCKTKRTVIVIAHRLST--------I-K-AVDRIVVID 663 (695)
Q Consensus 627 ~~~L~~~~~~~~~~~TvIiIaHrlst--------i-~-~aD~IvvL~ 663 (695)
.+.++.+++ .|+|+|+++|+.+. + + -||.|+.|+
T Consensus 147 ~~Li~~L~~---~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 147 FRLVARLKQ---IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHH---CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 666666542 47999999998753 2 3 389999987
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-07 Score=86.46 Aligned_cols=117 Identities=37% Similarity=0.470 Sum_probs=77.3
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCC-ceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK 555 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~-G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~ 555 (695)
+|..+.|+||+||||||+++.+++...... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478899999999999999999999997655 4445544322221111110
Q ss_pred chhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhH----
Q 005467 556 NEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV---- 629 (695)
Q Consensus 556 ~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~---- 629 (695)
.....+ ....+++.++..+++|-..+|+++++||+....+..........
T Consensus 51 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 ------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred ------------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 111111 24677788888899998888999999999999998877655431
Q ss_pred -HHhhhccccCcceEEEEeee
Q 005467 630 -LHALRNDCKTKRTVIVIAHR 649 (695)
Q Consensus 630 -L~~~~~~~~~~~TvIiIaHr 649 (695)
...... ..+..+|.++|.
T Consensus 107 ~~~~~~~--~~~~~~i~~~~~ 125 (148)
T smart00382 107 LLLLLKS--EKNLTVILTTND 125 (148)
T ss_pred HHHHHHh--cCCCEEEEEeCC
Confidence 111111 234677777774
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.6e-08 Score=108.62 Aligned_cols=133 Identities=21% Similarity=0.199 Sum_probs=93.8
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccc
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 546 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI 546 (695)
-++.+.-.+++|++++|+|+||+|||||++.|+|...|..|+|.+++..-.. ...++++++++|+..||+..-..|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 4666777788999999999999999999999999999999999998754332 2346789999999999988888888
Q ss_pred cccCCcC---CCchhHHHHHHHhhHhHhHhcCCCC--ccccccccccCCccchhHHHHHHhhcC
Q 005467 547 MYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCG--YETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 547 ~~g~~~~---~~~eei~~A~~~a~l~~fI~~LP~G--~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
.+..... ....++.+.++.|..++....-..| ...-+.+.+|| ++|..--+.|+++
T Consensus 261 ~l~~~~~~l~~~f~~~~~~~~~c~f~~c~h~~E~~c~v~~a~~~~~i~---~~r~~~Y~~l~~e 321 (356)
T PRK01889 261 QLWDAEDGVEETFSDIEELAAQCRFRDCAHEAEPGCAVQAAIENGELD---ERRLQSYRKLQRE 321 (356)
T ss_pred cccCchhhHHHhHHHHHHHHccCCCCCCCCCCCCCChHHHHHHcCCCC---HHHHHHHHHHHHH
Confidence 7762111 1124555566666554432222222 11112223665 8899888888876
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.1e-08 Score=109.14 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=85.1
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccc
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 546 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI 546 (695)
++++.++.+++|+++++|||+|+||||++..|++.|.+..|.. +|++|++|+ |.-+..||+
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQL 305 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQL 305 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHH
Confidence 4556666678899999999999999999999999998777752 457777777 555667777
Q ss_pred cccCC-cCC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccc-hhHHHHHHhhcCC-----cEEEEeccc
Q 005467 547 MYGCP-KDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK-QRIAIARAILRDP-----AILLLDEAT 615 (695)
Q Consensus 547 ~~g~~-~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQk-QRIaIARAll~~p-----~ILILDEaT 615 (695)
.+... .++ .++........ ..+.+.....|... ..+|+ ..+.-+.+++.++ .+|+||..|
T Consensus 306 r~~AeilGVpv~~~~~~~Dl~~aL-------~~L~d~d~VLIDTa--Gr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~ 376 (484)
T PRK06995 306 RIYGKILGVPVHAVKDAADLRLAL-------SELRNKHIVLIDTI--GMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATS 376 (484)
T ss_pred HHHHHHhCCCeeccCCchhHHHHH-------HhccCCCeEEeCCC--CcChhhHHHHHHHHHHhccCCCCeeEEEEeCCC
Confidence 64211 111 11121122222 23333322333331 11121 1233444455554 789999988
Q ss_pred cccCcccchhhhhHHHhhhccccCcceEEEEeeec
Q 005467 616 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 650 (695)
Q Consensus 616 SaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl 650 (695)
..-| +.+.+..... .+.+-+++|+=-
T Consensus 377 ~~~~------l~~i~~~f~~---~~~~g~IlTKlD 402 (484)
T PRK06995 377 HGDT------LNEVVQAYRG---PGLAGCILTKLD 402 (484)
T ss_pred cHHH------HHHHHHHhcc---CCCCEEEEeCCC
Confidence 7733 2333333321 346777888733
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.1e-07 Score=109.09 Aligned_cols=55 Identities=29% Similarity=0.402 Sum_probs=48.1
Q ss_pred HHHHhhcCCcEEEEecccccc-CcccchhhhhHHHhhhccccCcceEEEEeeecccccc
Q 005467 598 IARAILRDPAILLLDEATSAL-DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 655 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaL-D~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~ 655 (695)
|+|++..+|+++++|||++.| |+...+.+.+.++..++ .|.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK---~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK---ANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHhh
Confidence 789999999999999999999 68889999999988764 36799999999987653
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.4e-07 Score=94.42 Aligned_cols=58 Identities=22% Similarity=0.362 Sum_probs=42.0
Q ss_pred CccchhHHHHH----------------HhhcCCcEEEEeccccc------cCcccchhhhhHHHhhhccccCcceEEEEe
Q 005467 590 GGQKQRIAIAR----------------AILRDPAILLLDEATSA------LDSESEHYVKGVLHALRNDCKTKRTVIVIA 647 (695)
Q Consensus 590 GGQkQRIaIAR----------------All~~p~ILILDEaTSa------LD~~tE~~I~~~L~~~~~~~~~~~TvIiIa 647 (695)
+|+.|++.+++ +..++|+++|+| |+++ +|+..-..+.+.|.++.+. .|.|+++++
T Consensus 80 ~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~--~g~avl~v~ 156 (239)
T cd01125 80 SGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQ--TGAAILLVH 156 (239)
T ss_pred ccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHH--hCCEEEEEe
Confidence 56666666655 345799999999 7765 5766666777777776542 478999999
Q ss_pred eec
Q 005467 648 HRL 650 (695)
Q Consensus 648 Hrl 650 (695)
|..
T Consensus 157 H~~ 159 (239)
T cd01125 157 HVR 159 (239)
T ss_pred ccC
Confidence 966
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.1e-07 Score=102.76 Aligned_cols=101 Identities=21% Similarity=0.208 Sum_probs=75.6
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC---ceEEEcCccCCcchhHHHH----hhhccccCCcee
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIRWLR----EKIGFVGQEPQL 537 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~---G~I~idG~di~~i~~~~lR----~~I~~V~Qd~~L 537 (695)
..+++++ +++.+||+++|+|+||+|||||++.|+|.++++. |.|-.+|.++.++..+.++ +++++|....
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s-- 215 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS-- 215 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC--
Confidence 4699999 9999999999999999999999999999999988 9999999999888766654 2333332111
Q ss_pred eeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccc
Q 005467 538 LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 584 (695)
Q Consensus 538 F~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vg 584 (695)
++..-+++..+.-..-+.|+... +|.|..+=
T Consensus 216 --------------d~p~~~r~~a~~~a~tiAE~fr~--~G~~Vll~ 246 (428)
T PRK08149 216 --------------DFSSVDRCNAALVATTVAEYFRD--QGKRVVLF 246 (428)
T ss_pred --------------CCCHHHHHhHHHHHHHHHHHHHH--cCCCEEEE
Confidence 12234555555555566777764 48777664
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.2e-08 Score=106.15 Aligned_cols=73 Identities=23% Similarity=0.278 Sum_probs=57.2
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC---ceEEEcCccCCcchhHHH------HhhhccccCCc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPLTDLDIRWL------REKIGFVGQEP 535 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~---G~I~idG~di~~i~~~~l------R~~I~~V~Qd~ 535 (695)
..+++++ |+|.+||+++|+|+||+|||||+++|+|+++|+. |.|-.+|.+++++..+.+ |..+++++||.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4699999 9999999999999999999999999999999886 444456666666555554 33566777766
Q ss_pred eee
Q 005467 536 QLL 538 (695)
Q Consensus 536 ~LF 538 (695)
..+
T Consensus 222 s~~ 224 (434)
T PRK07196 222 SPL 224 (434)
T ss_pred Chh
Confidence 444
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.4e-07 Score=99.34 Aligned_cols=187 Identities=21% Similarity=0.210 Sum_probs=119.8
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
..+++++ |+|.+||+++|+|+||+|||||++.|.|..+|+.|.+...|..-+++.. +.+. ...++. ...|+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~--~~~~--~~~~~~--l~~tv-- 221 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVRE--FIEH--DLGEEG--LKRSV-- 221 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHH--HHHH--Hhcccc--cceEE--
Confidence 4699999 9999999999999999999999999999999999988777765555431 1111 111111 11221
Q ss_pred cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEecc--ccccCccc
Q 005467 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA--TSALDSES 622 (695)
Q Consensus 545 NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEa--TSaLD~~t 622 (695)
+.+...++..-++...+.-..-+.|+... +|+|..+=-++|+ | .|+|+= += =+.+.|| +.+.|+..
T Consensus 222 -vv~~~~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslT-----r--~A~A~R-Ei-sl~~ge~P~~~Gypp~~ 289 (440)
T TIGR01026 222 -VVVATSDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVT-----R--FAMAQR-EI-GLAAGEPPATKGYTPSV 289 (440)
T ss_pred -EEEECCCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChH-----H--HHHHHH-HH-HHhcCCCCcccccChhH
Confidence 11111112234555555555556677764 5888776432222 1 222210 00 0223553 56899998
Q ss_pred chhhhhHHHhhhccccCcc-------eEEEEeeecccccccCeEEEeeCCeEEEeccchhh
Q 005467 623 EHYVKGVLHALRNDCKTKR-------TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 623 E~~I~~~L~~~~~~~~~~~-------TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eL 676 (695)
-..+-+.+++... .++ ||++-+|+++ =.-||++.-+.+|+|+-.+.-++.
T Consensus 290 ~~~l~~l~ERag~---~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 290 FSTLPRLLERAGA---SGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred HHHHHHHHHHhcc---CCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecchhhC
Confidence 8888888887753 346 8888899984 356899999999999986654443
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-07 Score=103.24 Aligned_cols=89 Identities=20% Similarity=0.294 Sum_probs=65.0
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC--CC-ceEEEcCccCCcchhHHHHhhhccccCCc-----eeeeeecccccc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP--SD-GQIYIDGFPLTDLDIRWLREKIGFVGQEP-----QLLQMDIKSNIM 547 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p--~~-G~I~idG~di~~i~~~~lR~~I~~V~Qd~-----~LF~~TI~eNI~ 547 (695)
++|..++|+||+||||||+++.|++++.+ .+ +.|.....++ ++..+.+++..++|.|.. .-|...++++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 58999999999999999999999999953 33 4665555455 688777777778888864 357888999888
Q ss_pred ccCCcCC------Cchh-HHHHHHHhh
Q 005467 548 YGCPKDV------KNED-IEWAAKQAY 567 (695)
Q Consensus 548 ~g~~~~~------~~ee-i~~A~~~a~ 567 (695)
.. | |. -|.| +..|++++.
T Consensus 211 ~~-P-d~i~vGEiRd~et~~~al~aa~ 235 (358)
T TIGR02524 211 RK-P-HAILVGEARDAETISAALEAAL 235 (358)
T ss_pred cC-C-CEEeeeeeCCHHHHHHHHHHHH
Confidence 65 3 32 3333 445666643
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.6e-08 Score=95.47 Aligned_cols=66 Identities=27% Similarity=0.352 Sum_probs=50.9
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCc
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 535 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~ 535 (695)
..+=+.+.+++|+.++|+||+||||||+++.|+++++|..|.|.+++.+-..++ .+..++++.|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~ 79 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPG 79 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecC
Confidence 555677889999999999999999999999999999999999999764322221 133455555544
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.6e-07 Score=90.73 Aligned_cols=78 Identities=29% Similarity=0.376 Sum_probs=59.0
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhc------------CCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYE------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~------------p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eN 545 (695)
|++++|+|||||||||+++.|++.++ |..|+ ++|.++.-++.+.+.+.+ .++.++...++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999863 44555 477777777777776654 57888999999999
Q ss_pred ccccCCcCCCchhHHHHHHH
Q 005467 546 IMYGCPKDVKNEDIEWAAKQ 565 (695)
Q Consensus 546 I~~g~~~~~~~eei~~A~~~ 565 (695)
.||. ..+.+.++++.
T Consensus 76 -~y~~----~~~~i~~~~~~ 90 (180)
T TIGR03263 76 -YYGT----PKSPVEEALAA 90 (180)
T ss_pred -eeCC----cHHHHHHHHHC
Confidence 4772 34455555543
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.7e-07 Score=90.61 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=41.8
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHH-hhhcCCCceEEEcCccCCcchhHHHHhhhccccCCc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 535 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~-rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~ 535 (695)
=+++|+.++|.|++||||||++..++ +...+.++-+++....-.+ ......+..++..|+.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~-~i~~~~~~~g~~~~~~ 77 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRE-SIIRQAAQFGMDFEKA 77 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHH-HHHHHHHHhCCCHHHH
Confidence 48899999999999999999987544 4445666677887632111 1122245678877754
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.1e-07 Score=86.57 Aligned_cols=63 Identities=27% Similarity=0.467 Sum_probs=53.7
Q ss_pred EEEEeecCCChhhHHHHHHhhhcC-------------CCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccccc
Q 005467 481 VAIVGLSGSGKSTFVNLLLRLYEP-------------SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 547 (695)
Q Consensus 481 vAIVG~SGSGKSTLl~LL~rly~p-------------~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~ 547 (695)
++|+||||||||||++.|++.+++ ..|+ ++|+++.-++.+.+++. +.|+.++..++...| .
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~-~ 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN-Y 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-E
Confidence 789999999999999999999753 4555 48999988898888774 568889999999999 5
Q ss_pred cc
Q 005467 548 YG 549 (695)
Q Consensus 548 ~g 549 (695)
||
T Consensus 76 yg 77 (137)
T cd00071 76 YG 77 (137)
T ss_pred ec
Confidence 77
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-06 Score=84.75 Aligned_cols=85 Identities=20% Similarity=0.254 Sum_probs=63.9
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCC
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 665 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G 665 (695)
..|-||-=-=-+.|.+- +.-|.|||||-|+|-+.-.-++...|+++.+. |.-+|+.||.+=.+.. --.|+-++.|
T Consensus 129 ~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~s---GaQ~IiATHSPiLlAiP~A~I~~~~~~ 204 (233)
T COG3910 129 HMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADS---GAQIIIATHSPILLAIPGAEIYEISES 204 (233)
T ss_pred hhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhc---CCeEEEEecChhheeCCCcEEEEEecC
Confidence 57999977666666654 56899999999999999888888888887643 6789999999877654 5578888776
Q ss_pred eEEEeccchhh
Q 005467 666 RIIEVGNHAEL 676 (695)
Q Consensus 666 ~Ive~Gth~eL 676 (695)
-+ |+-+++|.
T Consensus 205 g~-~~~~fe~t 214 (233)
T COG3910 205 GI-EERDFEET 214 (233)
T ss_pred Cc-cccchHHH
Confidence 64 33444443
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-06 Score=109.50 Aligned_cols=44 Identities=34% Similarity=0.440 Sum_probs=36.9
Q ss_pred eeeEeecCcEEEEEeecCCChhhHHHHH-HhhhcCCCceEEEcCc
Q 005467 471 VCLTIEANEVVAIVGLSGSGKSTFVNLL-LRLYEPSDGQIYIDGF 514 (695)
Q Consensus 471 isl~I~~Ge~vAIVG~SGSGKSTLl~LL-~rly~p~~G~I~idG~ 514 (695)
+++..+++++++|+|++|+|||||++.+ .++.+..+|.+++++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 4667788999999999999999999999 4444556899999863
|
syringae 6; Provisional |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.8e-07 Score=97.77 Aligned_cols=121 Identities=26% Similarity=0.400 Sum_probs=76.9
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcC-CCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcC
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 553 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~ 553 (695)
.+++..+.|.||+||||||+++.+.+.+++ .+|+|..-+.++.-. . ......+.| .+
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~-~---~~~~~~i~q------------------~e 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV-H---RNKRSLINQ------------------RE 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh-c---cCccceEEc------------------cc
Confidence 467899999999999999999999998874 467877655332110 0 000000000 00
Q ss_pred CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhh
Q 005467 554 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHAL 633 (695)
Q Consensus 554 ~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~ 633 (695)
. |.+. .---=++++||-.+|+++++||++ |.++.... ++..
T Consensus 177 v-----------------------g~~~----------~~~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~---l~aa 217 (343)
T TIGR01420 177 V-----------------------GLDT----------LSFANALRAALREDPDVILIGEMR---DLETVELA---LTAA 217 (343)
T ss_pred c-----------------------CCCC----------cCHHHHHHHhhccCCCEEEEeCCC---CHHHHHHH---HHHH
Confidence 0 0000 001135778898999999999997 77766543 3333
Q ss_pred hccccCcceEEEEeeecccccccCeEE
Q 005467 634 RNDCKTKRTVIVIAHRLSTIKAVDRIV 660 (695)
Q Consensus 634 ~~~~~~~~TvIiIaHrlsti~~aD~Iv 660 (695)
..|.+++...|..+.....||++
T Consensus 218 ----~tGh~v~~T~Ha~~~~~~~~Rl~ 240 (343)
T TIGR01420 218 ----ETGHLVFGTLHTNSAAQTIERII 240 (343)
T ss_pred ----HcCCcEEEEEcCCCHHHHHHHHH
Confidence 34689999999987766666664
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.9e-07 Score=89.64 Aligned_cols=53 Identities=28% Similarity=0.407 Sum_probs=42.2
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHh-hhccccCCc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE-KIGFVGQEP 535 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~-~I~~V~Qd~ 535 (695)
+||+++|+|+|||||||+++.|.++..| +.+||.++... ..+|+ ..|+.+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~ 55 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDE 55 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcc
Confidence 6999999999999999999999999987 68999887542 23343 356776664
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=4e-07 Score=90.28 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=46.9
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 535 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~ 535 (695)
|+.++|+||||||||||+++|.+...| .+.+++..+........++.+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999999876 5888887777666666777888888874
|
|
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.8e-06 Score=92.61 Aligned_cols=174 Identities=24% Similarity=0.310 Sum_probs=116.7
Q ss_pred EeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHH-hhhcCCCceEEEcCccCCcchhHHHHhhhccccC
Q 005467 455 ISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQ 533 (695)
Q Consensus 455 VsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~-rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Q 533 (695)
|+|..|++ -.+.+ +=||+| ++.|||-.--|||||++.|. |-|+--.| ||.+ .|--.+
T Consensus 227 ve~~LP~~---g~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE-----------~VVT~~- 284 (448)
T PF09818_consen 227 VEIELPNG---GTVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGRE-----------FVVTDP- 284 (448)
T ss_pred EEEECCCC---CEEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCce-----------EEEECC-
Confidence 67777753 24555 458899 99999999999999999886 67775555 5522 221111
Q ss_pred CceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccchhHHHHHHhhcCCcEEEEe
Q 005467 534 EPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLD 612 (695)
Q Consensus 534 d~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQRIaIARAll~~p~ILILD 612 (695)
+.. .| + +.| -.....+.+..||.+||.|.||.--- .+=||---|=-.|..|+=..+++|++|
T Consensus 285 ~av----ki----r------AED---GR~V~~vDISpFI~~LP~g~dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiD 347 (448)
T PF09818_consen 285 DAV----KI----R------AED---GRSVEGVDISPFINNLPGGKDTTCFSTENASGSTSQAANIMEALEAGARLLLID 347 (448)
T ss_pred Cce----EE----E------ecC---CceEeCccchHHHhhCCCCCCCCcccccCCCchHHHHHHHHHHHHcCCCEEEEc
Confidence 110 11 1 000 11335678899999999999998322 378999999999999999999999999
Q ss_pred cccccc-----Ccccchhh----------hhHHHhhhccccCcceEEEEeee-cccccccCeEEEeeCCeEEE
Q 005467 613 EATSAL-----DSESEHYV----------KGVLHALRNDCKTKRTVIVIAHR-LSTIKAVDRIVVIDDGRIIE 669 (695)
Q Consensus 613 EaTSaL-----D~~tE~~I----------~~~L~~~~~~~~~~~TvIiIaHr-lsti~~aD~IvvL~~G~Ive 669 (695)
|=|||- |...++.| .+-++++.+. .|-++|+|+=- -..+..||+|++||+=+-.+
T Consensus 348 EDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~--~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~d 418 (448)
T PF09818_consen 348 EDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEK--LGVSTILVVGGSGDYFDVADRVIMMDEYRPKD 418 (448)
T ss_pred CcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHH--cCceEEEEeccchhhHhhCCEEEEecCccchh
Confidence 999985 33333333 1223333322 35555555543 34467899999999876543
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.5e-07 Score=88.64 Aligned_cols=111 Identities=16% Similarity=0.204 Sum_probs=61.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc--chhHHHHhhhccccCCceeeeeeccccccccCCcCCCch
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 557 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~--i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~e 557 (695)
+++|+|||||||||+++.|.+++ ..|++.+-+.|--. .+....+.. .+..++.+...+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~ 62 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYKDLSHEELEER----------------KNNNYDHPDAFDFD 62 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccccccccccHHHh----------------ccCCCCCCCcccHH
Confidence 48999999999999999999998 35555554444211 111111110 12223311112222
Q ss_pred hHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCc
Q 005467 558 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620 (695)
Q Consensus 558 ei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~ 620 (695)
.+.+.++.....+.+ ..| --+.|.|++++-.+ .+.+++++|+|++.+..++
T Consensus 63 ~~~~~l~~l~~~~~~-~~p--------~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 63 LLISHLQDLKNGKSV-EIP--------VYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHHHHHHCCCCE-ecc--------ccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 232222222211111 111 12577888776555 5788999999999999875
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.8e-07 Score=98.39 Aligned_cols=62 Identities=32% Similarity=0.458 Sum_probs=55.0
Q ss_pred ccCCccchhHHHHHHhhc---------CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc
Q 005467 587 LLSGGQKQRIAIARAILR---------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK 654 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~---------~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~ 654 (695)
.+|+||+++++||.++.. +||||+||||+|.||+.....+.+.|.+. |.++++++|++..+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~------~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL------GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc------CCEEEEEecChhhcc
Confidence 589999999999999999 99999999999999999998888888643 369999999886654
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.9e-06 Score=85.98 Aligned_cols=66 Identities=26% Similarity=0.372 Sum_probs=47.0
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhh-hcC------CCceEEEcCccCCcchhHHHHh---hhccccCCceeeeeeccc
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRL-YEP------SDGQIYIDGFPLTDLDIRWLRE---KIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rl-y~p------~~G~I~idG~di~~i~~~~lR~---~I~~V~Qd~~LF~~TI~e 544 (695)
+++|+++.|+||+||||||++.-++.. ..| .++.+++++.+ ..+.+.+++ ..+.. ..++.+
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~~~~~~~-------~~~~~~ 86 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIAERFGLD-------PEEVLD 86 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHHHHhccC-------hHhHhc
Confidence 889999999999999999999988643 334 37889999865 233444433 33332 245778
Q ss_pred ccccc
Q 005467 545 NIMYG 549 (695)
Q Consensus 545 NI~~g 549 (695)
||.+.
T Consensus 87 ~i~~~ 91 (235)
T cd01123 87 NIYVA 91 (235)
T ss_pred CEEEE
Confidence 88877
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.4e-06 Score=99.68 Aligned_cols=109 Identities=25% Similarity=0.269 Sum_probs=66.3
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCc--------eEEEcCccCCcchhHHHHhhhccccCCceeeeeecccccccc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--------QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 549 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G--------~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g 549 (695)
.+.++|+||+|+||||+++++.++..+..| -|.+||.++. ++...+. |-.+|
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i~-------------------~~llg 234 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREVT-------------------NPLLG 234 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHHh-------------------HHhcC
Confidence 456999999999999999999999976554 4888887663 2322221 11222
Q ss_pred CCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhH
Q 005467 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 629 (695)
Q Consensus 550 ~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~ 629 (695)
...+...+...+.++..++.++...+. ..+||| +|+||| +..||......+.+.
T Consensus 235 ~~~~~~~~~a~~~l~~~gl~~~~~g~v---------~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~ 288 (615)
T TIGR02903 235 SVHDPIYQGARRDLAETGVPEPKTGLV---------TDAHGG----------------VLFIDE-IGELDPLLQNKLLKV 288 (615)
T ss_pred CccHHHHHHHHHHHHHcCCCchhcCch---------hhcCCC----------------eEEEec-cccCCHHHHHHHHHH
Confidence 100000111122223333222111110 257888 999999 799999988888877
Q ss_pred HHh
Q 005467 630 LHA 632 (695)
Q Consensus 630 L~~ 632 (695)
+++
T Consensus 289 Le~ 291 (615)
T TIGR02903 289 LED 291 (615)
T ss_pred Hhh
Confidence 765
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.3e-07 Score=93.52 Aligned_cols=152 Identities=18% Similarity=0.104 Sum_probs=107.1
Q ss_pred hhhHHHHHHHHHHHHhhhcc---ccccccccccc----cccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhh
Q 005467 198 ANIVLVKRLRETLYSALLFQ---DVYFFDTEAVG----GLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLS 270 (695)
Q Consensus 198 ~~~~~~~~lr~~lf~~ll~~---~~~ff~~~~~G----~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~s 270 (695)
..+.+..+.|+.+-+++.+. +..||.-...+ .-=+|++.|++.+.+........++..++.++...+.+..++
T Consensus 89 l~~~L~l~wR~~Lt~~~~~~yl~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~ 168 (281)
T PF06472_consen 89 LRQRLALRWREWLTRHLHDRYLSNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSIS 168 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444555555554444332 22555533322 233699999999988777777777777777777777777777
Q ss_pred ccchh-hHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhh
Q 005467 271 WPLTL-SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIR 349 (695)
Q Consensus 271 w~l~l-i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 349 (695)
..++. ++++...+-.++..+.++...+...++++..+.......-..++.+.|-.++.|+.|.++.++..++..+...+
T Consensus 169 g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~ 248 (281)
T PF06472_consen 169 GWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRR 248 (281)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 77666 34444444556677888888888888888888888888889999999999999999998888887776654433
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.2e-06 Score=88.39 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=27.2
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
|+|+++||+||||||||||++.|.+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999874
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=98.19 E-value=6e-07 Score=96.19 Aligned_cols=61 Identities=26% Similarity=0.322 Sum_probs=52.3
Q ss_pred ceeeeeeeEe---ecCcE-----EEEEeecCCChhhHHHHHHhhhcCC---CceEEEcCccCCcchhHHHHh
Q 005467 466 PILNHVCLTI---EANEV-----VAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLDIRWLRE 526 (695)
Q Consensus 466 ~vL~~isl~I---~~Ge~-----vAIVG~SGSGKSTLl~LL~rly~p~---~G~I~idG~di~~i~~~~lR~ 526 (695)
.+++++++++ ++|+. +||+|+||||||||++.|.+++++. .|.|.+||..+..-+...+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 5888999988 67887 9999999999999999999999875 588999999887666666654
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.9e-06 Score=88.05 Aligned_cols=108 Identities=17% Similarity=0.163 Sum_probs=71.2
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc-cccCCceeeeeecc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG-FVGQEPQLLQMDIK 543 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~-~V~Qd~~LF~~TI~ 543 (695)
..+++++ +++.+||+++|+|+||+|||||++.|+|+..|+.|.+..-|.+-+++..- ..+..+ -..+.+.++..|-
T Consensus 57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev~~~-~~~~~~~~~l~rtvvv~~t~- 133 (326)
T cd01136 57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREVREF-IEKDLGEEGLKRSVVVVATS- 133 (326)
T ss_pred cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccHHHH-HHHHHhcCccceEEEEEcCC-
Confidence 4699999 99999999999999999999999999999999999888877554444311 111110 1112222222211
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 585 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge 585 (695)
++...+++..+--...+.|+... .|.|..+--
T Consensus 134 --------d~~~~~r~~~~~~a~~~AEyfr~--~g~~Vll~~ 165 (326)
T cd01136 134 --------DESPLLRVKAAYTATAIAEYFRD--QGKDVLLLM 165 (326)
T ss_pred --------CCCHHHHHHHHHHHHHHHHHHHH--cCCCeEEEe
Confidence 12334566665555556777765 588876653
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1e-06 Score=95.67 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=51.0
Q ss_pred ccccceEEEEEEeeecCCCCccceeeeeeeEeecCc-------EEEEEeecCCChhhHHHHHHhhh
Q 005467 444 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANE-------VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 444 ~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge-------~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+...|.+++++|+|+||. ..+++++++|++++|+ +++|||.+|+|||||++.|.|-.
T Consensus 13 ~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 13 EEFKGDTEALAAAVREDA--STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hhhCCccccccccccCCC--CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 456789999999999994 3579999999999999 99999999999999999998753
|
|
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2e-06 Score=86.18 Aligned_cols=42 Identities=31% Similarity=0.334 Sum_probs=36.0
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCC-CceEEEcCccCC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLT 517 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-~G~I~idG~di~ 517 (695)
++|++++|+|+|||||||++++|.+.+.+. .|.+.+||.+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 578999999999999999999999976544 568999996654
|
|
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.4e-06 Score=83.85 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=37.7
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE-----------cCccCCcchhHHHHh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-----------DGFPLTDLDIRWLRE 526 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i-----------dG~di~~i~~~~lR~ 526 (695)
|+.++|+|||||||||+++.|++.+.+. |.+.+ +|.++...+.+.+..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 59 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDH 59 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHH
Confidence 6789999999999999999999998654 65544 677776666666543
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.5e-05 Score=79.92 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=47.2
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCcee
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL 537 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~L 537 (695)
+++|+||+||||||+++.+.+.+.+..| +.+-..|........+.+..++++|+..+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 59 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERIL 59 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCcee
Confidence 6899999999999999999999987655 55666677666667777788999998865
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >PF13748 ABC_membrane_3: ABC transporter transmembrane region | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.5e-06 Score=83.41 Aligned_cols=166 Identities=14% Similarity=0.172 Sum_probs=113.8
Q ss_pred HhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecchhhhHHHHhhhcccccccceechhhhHHHHH
Q 005467 126 LIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKR 205 (695)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~~~~~~~ 205 (695)
..|+|++.+...+.+.+...+..+..|++.+.+||...+++.. ....+.++.++..+.+..|...-.+ .-.+
T Consensus 4 I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~~----~~~~~~~~~l~~~~igaaRR~~DTR----vf~r 75 (237)
T PF13748_consen 4 IARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDVW----QALMYAALVLLMWAIGAARRIYDTR----VFSR 75 (237)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH----HHHHHHHHHHHHHHHhhhhHHHhhH----HHHH
Confidence 4567778888888889999999999999999999877655421 1222223333333344455443333 3444
Q ss_pred HHHHHHHhh-hccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHHHHHHH
Q 005467 206 LRETLYSAL-LFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFL 284 (695)
Q Consensus 206 lr~~lf~~l-l~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~~~~l~ 284 (695)
++.++-..+ +++. -++.+++.+..|++ =..++-+++...++.++.+++++++++++++.++.++++.+++.+.++
T Consensus 76 Iy~~la~~vi~~qr---~~~~~~S~i~ARv~-lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l~~~ 151 (237)
T PF13748_consen 76 IYAELAVPVILSQR---QQGLSVSTIAARVA-LSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLILALF 151 (237)
T ss_pred HHHHHhHHHHHHHH---HhCCChhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444332 2222 24566778888884 456688899999999999999999999999999999999988888877
Q ss_pred HHHHHHHhhhhhhhhhHhh
Q 005467 285 SIIVSVYGQYQKRASVLTQ 303 (695)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~ 303 (695)
.++...|.++..+...+.+
T Consensus 152 ~~i~~~f~~~~~~L~~~LN 170 (237)
T PF13748_consen 152 LLILPRFARRNYRLYRRLN 170 (237)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7777766666655544443
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.9e-06 Score=103.68 Aligned_cols=76 Identities=26% Similarity=0.394 Sum_probs=66.6
Q ss_pred ccCCccchh------HHHHHHhhcC--CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCe
Q 005467 587 LLSGGQKQR------IAIARAILRD--PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDR 658 (695)
Q Consensus 587 ~LSGGQkQR------IaIARAll~~--p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~ 658 (695)
+|||||+=. +|||..+-.+ -+.|+|||||.+||+++-..+.++|.++..+ +++|+||||.......+|.
T Consensus 815 ~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~---~~qiiIISH~eel~e~~~~ 891 (908)
T COG0419 815 TLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD---GRQIIIISHVEELKERADV 891 (908)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHHHhCCe
Confidence 899999875 4555666677 6999999999999999999999999998643 7999999999999999999
Q ss_pred EEEeeCC
Q 005467 659 IVVIDDG 665 (695)
Q Consensus 659 IvvL~~G 665 (695)
++.++..
T Consensus 892 ~i~V~k~ 898 (908)
T COG0419 892 RIRVKKD 898 (908)
T ss_pred EEEEEec
Confidence 9988754
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.5e-06 Score=107.60 Aligned_cols=59 Identities=29% Similarity=0.427 Sum_probs=52.5
Q ss_pred cccCCccchhHH----HHHH--------hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeec
Q 005467 586 DLLSGGQKQRIA----IARA--------ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRL 650 (695)
Q Consensus 586 ~~LSGGQkQRIa----IARA--------ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl 650 (695)
+.||||||||++ +|+| +..+|++++|||||++||+.+...+++.+.++ +.++|++||++
T Consensus 1246 ~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l------~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1246 GPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL------DLDFVMTSERE 1316 (1353)
T ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh------CCCEEEEccch
Confidence 379999999996 6866 44799999999999999999999999999876 47999999987
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.6e-05 Score=73.49 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=39.1
Q ss_pred chhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccc--cCcceEEEEeeecc
Q 005467 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC--KTKRTVIVIAHRLS 651 (695)
Q Consensus 593 kQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~--~~~~TvIiIaHrls 651 (695)
++.....++..+++.++++||+-.. +.+....+.+.+....... ..+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5667777788889999999998765 4445555666666653210 13567888888654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.2e-06 Score=84.45 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=25.4
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++.+++|+|+||||||||++.|.+.+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999999998
|
|
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.6e-05 Score=96.09 Aligned_cols=61 Identities=20% Similarity=0.333 Sum_probs=47.9
Q ss_pred HhhcCCcEEEEeccccccC-cccchhhhhHHHhhhccccCcceEEEEeeeccc----------ccccCeEEEeeC
Q 005467 601 AILRDPAILLLDEATSALD-SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST----------IKAVDRIVVIDD 664 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD-~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst----------i~~aD~IvvL~~ 664 (695)
.+-.+|.++++|||...|| +...+.+.+.+++.++ .|..++++||.++. +++|+.-+.|-|
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK---~~~~~i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn 709 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK---LNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPN 709 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHhChhHHHHHHhCCeEEEcCC
Confidence 3456899999999999999 6778888888888764 36799999999855 455666555555
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.2e-05 Score=88.35 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=34.5
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCce-EEEcCcc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGFP 515 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~-I~idG~d 515 (695)
=+++|+.+.|.|++|+|||||+.-++.-.....|+ +++++.+
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 48999999999999999999999887766555555 4777754
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.1e-06 Score=93.96 Aligned_cols=82 Identities=22% Similarity=0.276 Sum_probs=60.3
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC-CceEEE---cCccCCcchhHHHHh---hhccc-----c
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYI---DGFPLTDLDIRWLRE---KIGFV-----G 532 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-~G~I~i---dG~di~~i~~~~lR~---~I~~V-----~ 532 (695)
..+++++ |++.+||+++|+|+||||||||++.|+|..++. .|.|.+ +|.++.++..+.+++ +.++| +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 3588888 999999999999999999999999999988543 466666 557777776666652 34455 7
Q ss_pred CCce------eeeeecccccc
Q 005467 533 QEPQ------LLQMDIKSNIM 547 (695)
Q Consensus 533 Qd~~------LF~~TI~eNI~ 547 (695)
|+|. ....+|+|.++
T Consensus 231 q~p~~rlnp~~va~~IAE~~r 251 (442)
T PRK06315 231 QSSQLRLNAAYVGTAIAEYFR 251 (442)
T ss_pred CCHHHHhhHHHHHHHHHHHHH
Confidence 7662 12245666665
|
|
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.4e-05 Score=94.62 Aligned_cols=64 Identities=25% Similarity=0.341 Sum_probs=48.8
Q ss_pred HHhhcCCcEEEEeccccccC-cccchhhhhHHHhhhccccCcceEEEEeeecccc----------cccCeEEEeeCCe
Q 005467 600 RAILRDPAILLLDEATSALD-SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI----------KAVDRIVVIDDGR 666 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD-~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti----------~~aD~IvvL~~G~ 666 (695)
+.+-.+|+++++|||++.|| +...+.+.+.++..++ .|.+++++||+++.+ .+|+.-++|.+.+
T Consensus 630 ~~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK---~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~~ 704 (811)
T PRK13873 630 DRFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRK---KNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNER 704 (811)
T ss_pred HHhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHH---cCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCch
Confidence 33445899999999999999 5678888888888764 367999999998643 4566666666654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 695 | ||||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 7e-81 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 4e-80 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-80 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-80 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 5e-62 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 7e-61 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 4e-60 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-59 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 5e-57 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-53 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-44 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-44 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-44 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 6e-44 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-43 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-43 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-43 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-43 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-43 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-40 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-39 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-38 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-38 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-37 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-35 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 5e-20 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 6e-20 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 7e-20 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-19 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-19 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-19 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 4e-19 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-18 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 9e-18 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-16 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-16 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-16 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 4e-15 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-15 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-14 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-14 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-13 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-13 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-13 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-13 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 8e-13 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-12 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 7e-12 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 7e-12 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 8e-12 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-11 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 2e-11 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-11 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 4e-11 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 4e-11 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 6e-11 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 1e-10 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-10 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-10 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 4e-10 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-10 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 6e-10 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-10 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-09 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 2e-09 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 3e-09 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 3e-09 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 5e-09 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 5e-09 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 5e-09 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 5e-09 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 6e-09 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 1e-08 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-08 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-08 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 7e-08 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 9e-08 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 3e-07 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 3e-07 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 8e-07 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 2e-06 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 2e-06 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-05 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 3e-05 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 6e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-04 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 6e-04 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 6e-04 |
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 695 | |||
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 0.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-172 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-167 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-162 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-167 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-155 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-136 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-124 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-120 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-119 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-112 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-106 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-100 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-58 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-44 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 4e-43 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-42 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-42 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 5e-42 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 5e-41 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 5e-41 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 8e-41 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-40 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 8e-40 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 7e-39 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 2e-37 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-36 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-33 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 8e-36 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-34 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 4e-32 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-34 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-33 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-34 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-32 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-33 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 5e-31 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-30 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 8e-28 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-27 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 3e-27 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 3e-26 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 7e-26 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-25 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 3e-25 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 5e-25 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-24 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 3e-23 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 6e-20 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 6e-18 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-13 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-06 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 4e-15 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 7e-14 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 3e-13 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 2e-11 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 3e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-09 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 1e-05 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 2e-04 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 2e-04 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 3e-04 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 4e-04 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 6e-04 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 9e-04 |
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 503 bits (1297), Expect = e-172
Identities = 174/587 (29%), Positives = 294/587 (50%), Gaps = 14/587 (2%)
Query: 109 PTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAV---FSAQRE 165
K ++ W R+W I K ++VA +LI+ A S+ M +L + F
Sbjct: 2 HNDKDLSTWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR 61
Query: 166 EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTE 225
+++ ++ L + GI S + S C S + +V +R L+ ++ V FFD +
Sbjct: 62 SVLLW--MPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ 119
Query: 226 AVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS 285
+ G L SR+T D +++++ + ++R G FI + SW L++ +++ +S
Sbjct: 120 STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVS 179
Query: 286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAF 345
I + V + + S Q A++ L + V ++G +E E R+ K+
Sbjct: 180 IAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRL 239
Query: 346 IRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATW 405
++ A + + + + ++ ++ +T L+
Sbjct: 240 QGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLK 299
Query: 406 RMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTV 465
+ + + + + A + +F ++D + R G ++F N++F YP R
Sbjct: 300 SLTNVNAQFQRGMAACQTLFAILDSEQEKD--EGKRVIDRATGDLEFRNVTFTYPGREV- 356
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525
P L ++ L I A + VA+VG SGSGKST +L+ R Y+ +G I +DG L + + LR
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416
Query: 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD 585
++ V Q L + +NI Y ++ E IE AA+ AY +FI + G +T++ +
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGE 476
Query: 586 D--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV 643
+ LLSGGQ+QRIAIARA+LRD IL+LDEATSALD+ESE ++ L L+ + RT
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN----RTS 532
Query: 644 IVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 690
+VIAHRLSTI+ D IVV++DG I+E G H+ELL + +YA+L K Q
Sbjct: 533 LVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 513 bits (1323), Expect = e-167
Identities = 190/521 (36%), Positives = 286/521 (54%), Gaps = 8/521 (1%)
Query: 176 FLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLT 235
+ + I + ++ + +A + ++R+ + A++ Q++ +FD VG L +RLT
Sbjct: 113 YYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLT 172
Query: 236 ADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQ 295
D +++ IG+ I M + G FI T W LTL L I L + ++ +
Sbjct: 173 DDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKIL 232
Query: 296 KRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355
+ A A VA+E L +RTV +G ++KEL RY LE+ + I++++
Sbjct: 233 SSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITAN 292
Query: 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLL 415
+ + L ++ +A G ++ + S Q+ ++ + N+ +
Sbjct: 293 ISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFA 352
Query: 416 QSIGATEKVFQLIDLLPS-NQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLT 474
+ GA +VF++ID PS + F G K + G+++F NI F YPSR V IL + L
Sbjct: 353 NARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLK 412
Query: 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE 534
+++ + VA+VG SG GKST V L+ RLY+P DG + IDG + +++R+LRE IG V QE
Sbjct: 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQE 472
Query: 535 PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQ 592
P L I NI YG DV ++IE A K+A ++FI+ LP ++TLV + LSGGQ
Sbjct: 473 PVLFATTIAENIRYGRE-DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQ 531
Query: 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 652
KQRIAIARA++R+P ILLLDEATSALD+ESE V AL + RT IVIAHRLST
Sbjct: 532 KQRIAIARALVRNPKILLLDEATSALDTESE---AVVQAALDKARE-GRTTIVIAHRLST 587
Query: 653 IKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTES 693
++ D I D G I+E GNH EL+ + +Y KLV QT
Sbjct: 588 VRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAG 628
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 499 bits (1288), Expect = e-162
Identities = 192/611 (31%), Positives = 298/611 (48%), Gaps = 29/611 (4%)
Query: 101 SDGQEAENPTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEA-- 158
D + + + R+ L + +V + I+ + I ++
Sbjct: 674 QDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVG 733
Query: 159 VFSAQREEAMVFHKSSRF---LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALL 215
VF+ S+ F ++L + S I L+ F A +L KRLR ++ ++L
Sbjct: 734 VFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSML 793
Query: 216 FQDVYFFDTE--AVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPL 273
QDV +FD G LT+RL D ++ G+ + +I +N I L W L
Sbjct: 794 RQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQL 853
Query: 274 TLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKEL 333
TL L I ++I V + ++ ++ + +A E + RTV E+K
Sbjct: 854 TLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFE 913
Query: 334 GRYKIWLEKLAFIRIRESMAYGLWN-MSFITLYRSTQVMAVLL--GGMSIMIGQVSPEQL 390
Y L+ ++++ +G+ + +Y A G + ++ E +
Sbjct: 914 TMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMY---FSYAAAFRFGAYLVTQQLMTFENV 970
Query: 391 TKYVLYCEWLIYATWRMVDNLSSLLQSIG----ATEKVFQLIDLLPSNQFLS-EGVKLQR 445
+++ V +SS + + ++I+ P S +G+K
Sbjct: 971 LLVFSA---IVFGAM-AVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNM 1026
Query: 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505
L G+VQF + F+YP+RP++P+L + L ++ + +A+VG SG GKST V LL R Y+P
Sbjct: 1027 LEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM 1086
Query: 506 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKNEDIEWAAK 564
G +++DG + L+++WLR ++G V QEP L I NI YG + V E+I AAK
Sbjct: 1087 AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAK 1146
Query: 565 QAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622
+A +H+FI SLP Y T V D LSGGQKQRIAIARA++R P ILLLDEATSALD+ES
Sbjct: 1147 EANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206
Query: 623 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRL 682
E K V AL + RT IVIAHRLSTI+ D IVVI +G++ E G H +LL + +
Sbjct: 1207 E---KVVQEALDKARE-GRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGI 1262
Query: 683 YAKLVKRQTES 693
Y +V Q +
Sbjct: 1263 YFSMVSVQAGA 1273
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 490 bits (1265), Expect = e-167
Identities = 176/589 (29%), Positives = 293/589 (49%), Gaps = 18/589 (3%)
Query: 109 PTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAV---FSAQRE 165
+ W R+W I K ++V+ +L++ A ++ M +L + F
Sbjct: 2 SLHSDESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAES 61
Query: 166 EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTE 225
+ ++ L G+ S C S + +V ++R L++ + V FFD E
Sbjct: 62 NFLRI--LPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE 119
Query: 226 AVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLS 285
+ GGL SR+T D ++++ + I+R G + SW L+L +++ ++
Sbjct: 120 STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVA 179
Query: 286 IIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAF 345
+S + ++ S Q H + A++ L + V YG +E E R+ +
Sbjct: 180 FAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQ 239
Query: 346 IRIRESMAYGLWNMSFITLYRSTQVMAVL-LGGMSIMIGQVSPEQLTKYVLYCEWLIYAT 404
++ A + I + S + AVL L + + +++P T + +
Sbjct: 240 QTMKLVSAQSI-ADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAM-FGLMRP 297
Query: 405 WRMVDNLSSLLQS-IGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRP 463
+ + +++S Q + A + +F L+DL + + +R+ G V +++F Y +
Sbjct: 298 LKALTSVTSEFQRGMAACQTLFGLMDLETERD--NGKYEAERVNGEVDVKDVTFTYQGKE 355
Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 523
P L+HV +I + VA+VG SGSGKST NL R Y+ G I +DG + D +
Sbjct: 356 K-PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTN 414
Query: 524 LREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 583
LR V Q L I +NI Y + E IE AA+QA+ EFI ++P G +T++
Sbjct: 415 LRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVI 474
Query: 584 DDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
++ LSGGQ+QR+AIARA+LRD +L+LDEATSALD+ESE ++ L L+ + +
Sbjct: 475 GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN----K 530
Query: 642 TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 690
TV+VIAHRLSTI+ D I+V+D+G IIE G HA+LL + YA+L + Q
Sbjct: 531 TVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 461 bits (1188), Expect = e-155
Identities = 167/581 (28%), Positives = 273/581 (46%), Gaps = 16/581 (2%)
Query: 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAV--------FSAQREEAMVFH 171
+ R + K+ + + I+ + +P ++ A+ + + +
Sbjct: 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61
Query: 172 KSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLT 231
L + + +R + ++ +R+ LY+ L F+ VG +
Sbjct: 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVI 121
Query: 232 SRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVY 291
SR+ D ++ + I + I + + A + L LTL+AL I F + V V+
Sbjct: 122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 292 GQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES 351
++ + + A E + + V+ + E+ E + ++ +
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 352 MAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNL 411
+ T+ ++ + +G + G ++ L +V Y E L R+V +
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASF 301
Query: 412 SSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHV 471
++L QS + ++VFQLID + ++ G + ++SF Y PIL +
Sbjct: 302 TTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEA-PILKDI 360
Query: 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 531
L+IE E VA VG+SG GKST +NL+ R Y+ + GQI IDG + D LR +IG V
Sbjct: 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLV 420
Query: 532 GQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 589
Q+ L +K NI+ G P +E++ AAK A H+FI++LP GY+T V + LS
Sbjct: 421 QQDNILFSDTVKENILLGRP-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479
Query: 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 649
GGQKQR++IAR L +P IL+LDEATSALD ESE ++ L L D RT +++AHR
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD----RTTLIVAHR 535
Query: 650 LSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 690
LSTI D+IVVI++G I+E G H EL+ K Y L Q
Sbjct: 536 LSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQ 576
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 399 bits (1028), Expect = e-136
Identities = 94/259 (36%), Positives = 149/259 (57%), Gaps = 4/259 (1%)
Query: 437 LSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVN 496
LS + + G V+F ++SF YP+ P V +L + T+ +V A+VG +GSGKST
Sbjct: 4 LSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAA 63
Query: 497 LLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN 556
LL LY+P+ G++ +DG PL D +L ++ VGQEP L + NI YG +
Sbjct: 64 LLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTM 123
Query: 557 EDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEA 614
E+I A ++ H+FI P GY+T V + + LSGGQ+Q +A+ARA++R P +L+LD A
Sbjct: 124 EEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNA 183
Query: 615 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHA 674
TSALD+ ++ V+ +L+ RTV++I +LS + I+ + +G + E G H
Sbjct: 184 TSALDAGNQLRVQRLLYESPE--WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHL 241
Query: 675 ELLHKGRLYAKLVKRQTES 693
+L+ +G Y +V+
Sbjct: 242 QLMERGGCYRSMVEALAAP 260
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 381 bits (980), Expect = e-124
Identities = 158/589 (26%), Positives = 282/589 (47%), Gaps = 19/589 (3%)
Query: 109 PTAKPITVWIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAV--FSAQREE 166
L R+ + + +++ + V+++ + P ++ + + R
Sbjct: 14 EKPALKNPTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF 73
Query: 167 AMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEA 226
++ L + + + L+ + +V RLR+ L+ L V FFD
Sbjct: 74 DLLPRYML-ILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTP 132
Query: 227 VGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSI 286
G + SR+ D ++NV+GN I + AGA I + ++ L+L L I +
Sbjct: 133 HGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVL 192
Query: 287 IVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFI 346
I + ++ Q N + +E + + ++++ EEKE+ ++ E L +
Sbjct: 193 ITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKV 252
Query: 347 RIRESMAYGLWN--MSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYAT 404
+ + G+ M+ + + GG + ++ + ++ Y
Sbjct: 253 GTKAQIFSGVLPPLMNMVN--NLGFALISGFGGWLALKDIITVGTIATFIGYS-RQFTRP 309
Query: 405 WRMVDNLSSLLQS-IGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRP 463
+ N +++Q + + E++F+++DL + + V+L+ + G ++F N+ F Y
Sbjct: 310 LNELSNQFNMIQMALASAERIFEILDL-EEEKDDPDAVELREVRGEIEFKNVWFSY--DK 366
Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 523
P+L + I+ + VA+VG +GSGK+T VNLL+R Y+ GQI +DG + +
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSS 426
Query: 524 LREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 583
LR IG V Q+ L +K N+ YG P +E+I+ AAK + FI LP GYET++
Sbjct: 427 LRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEIKEAAKLTHSDHFIKHLPEGYETVL 485
Query: 584 DDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
D+ LS GQ+Q +AI RA L +P IL+LDEATS +D+++E ++ + L +
Sbjct: 486 TDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEG----K 541
Query: 642 TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 690
T I+IAHRL+TIK D I+V+ DG I+E+G H EL+ K Y +L Q
Sbjct: 542 TSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 357 bits (920), Expect = e-120
Identities = 114/252 (45%), Positives = 153/252 (60%), Gaps = 9/252 (3%)
Query: 444 QRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503
+ F NI F Y IL+++ L+I+ EV+ IVG SGSGKST L+ R Y
Sbjct: 2 HHHHHDITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 504 PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAA 563
P +GQ+ IDG L D WLR ++G V Q+ LL I NI P + E + +AA
Sbjct: 61 PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAA 119
Query: 564 KQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
K A H+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD E
Sbjct: 120 KLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 622 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGR 681
SEH + +H + RTVI+IAHRLST+K DRI+V++ G+I+E G H ELL +
Sbjct: 180 SEHVIMRNMHKICKG----RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPE 235
Query: 682 -LYAKLVKRQTE 692
LY+ L + Q++
Sbjct: 236 SLYSYLYQLQSD 247
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 355 bits (913), Expect = e-119
Identities = 98/243 (40%), Positives = 140/243 (57%), Gaps = 8/243 (3%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
+ ++ F Y IL + + N ++A G SG GKST +LL R Y+P+ G+I
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 569
IDG P+ ++ + R +IGFV Q+ ++ I+ N+ YG D +ED+ A+
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 570 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
F+ ++P T V + +SGGQ+QR+AIARA LR+P IL+LDEAT++LDSESE V+
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 628 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 687
L +L RT +VIAHRLSTI D+I I+ G+I G H EL+ LYAK V
Sbjct: 180 KALDSLMKG----RTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235
Query: 688 KRQ 690
Q
Sbjct: 236 SEQ 238
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 338 bits (870), Expect = e-112
Identities = 95/258 (36%), Positives = 153/258 (59%), Gaps = 8/258 (3%)
Query: 438 SEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 497
S ++ +++F +++F YP + L + I + A+VG +GSGKST L
Sbjct: 6 SLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65
Query: 498 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 557
L R Y+ +G I I G + + +R IG V Q+ L IK NI+YG D +E
Sbjct: 66 LYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL-DATDE 123
Query: 558 DIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEAT 615
++ A K A +++FI +LP ++T+V + LSGG++QRIAIAR +L+DP I++ DEAT
Sbjct: 124 EVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEAT 183
Query: 616 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 675
S+LDS++E+ + + LR + RT+I+IAHRLSTI + + I++++ G+I+E G H +
Sbjct: 184 SSLDSKTEYLFQKAVEDLRKN----RTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKD 239
Query: 676 LLHKGRLYAKLVKRQTES 693
LL YA++ Q+
Sbjct: 240 LLKLNGEYAEMWNMQSGG 257
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 323 bits (831), Expect = e-106
Identities = 110/280 (39%), Positives = 154/280 (55%), Gaps = 9/280 (3%)
Query: 416 QSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTI 475
E +F L+ + L L+ G ++F N+ F Y L V T+
Sbjct: 20 HMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSY--ADGRETLQDVSFTV 77
Query: 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP 535
+ +A+VG SG+GKST + LL R Y+ S G I IDG ++ + LR IG V Q+
Sbjct: 78 MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDT 137
Query: 536 QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 593
L I NI YG N+++E AA+ A +H+ I++ P GY T V + LSGG+K
Sbjct: 138 VLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEK 196
Query: 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 653
QR+AIAR IL+ P I+LLDEATSALD+ +E + +L C RT IV+AHRLST+
Sbjct: 197 QRVAIARTILKAPGIILLDEATSALDTSNERA---IQASLAKVCAN-RTTIVVAHRLSTV 252
Query: 654 KAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTES 693
D+I+VI DG I+E G H LL +G +YA + + Q
Sbjct: 253 VNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQ 292
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 318 bits (817), Expect = e-100
Identities = 144/589 (24%), Positives = 280/589 (47%), Gaps = 39/589 (6%)
Query: 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVF-HKSSRFLV 178
+ + ++A ++V + +++ P +LA V K+ ++
Sbjct: 11 SKTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILML 70
Query: 179 LLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALL---FQDVYFFDTEAVGGLTSRLT 235
++ + + + S A+ LR L+ +L +V F T L +RLT
Sbjct: 71 IVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHT---SSLITRLT 127
Query: 236 ADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSV----- 290
D +L N++ + +++R L G + ++++ L+ + + + ++
Sbjct: 128 NDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKG 187
Query: 291 ---YGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLA--F 345
+ + Q+ + N V +E L +R VR + EE E ++ E L
Sbjct: 188 NPLFRKIQESTDEV--------NRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSI 239
Query: 346 IRIRESMAYGLWNMSFITLYRSTQVMAVL-LGGMSIMIGQVSPEQLTKYVLYCEWLIYAT 404
I + + + + ++AVL GG+ + Q+ + Y Y I +
Sbjct: 240 ISAFSLIV---FALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYL-MQIMFS 295
Query: 405 WRMVDNLSSLL-QSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRP 463
M+ N+ + + ++ + ++V ++++ P+ + + L + G V F N+ F Y
Sbjct: 296 LMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFE-N 354
Query: 464 TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 523
T P+L+ V +++ +VA++G +GSGKST +NL+ RL +P G++ +D + + ++
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKD 414
Query: 524 LREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 583
LR I V QE L IK N+ +G D +++I AAK A +H+FI+SLP GY++ V
Sbjct: 415 LRGHISAVPQETVLFSGTIKENLKWGRE-DATDDEIVEAAKIAQIHDFIISLPEGYDSRV 473
Query: 584 DD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
+ SGGQKQR++IARA+++ P +L+LD+ TS++D +E K +L L+ K
Sbjct: 474 ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITE---KRILDGLKRYTK-GC 529
Query: 642 TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQ 690
T +I ++ T D+I+V+ +G++ G H ELL + Y ++ + Q
Sbjct: 530 TTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYESQ 578
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 2e-58
Identities = 60/251 (23%), Positives = 113/251 (45%), Gaps = 15/251 (5%)
Query: 448 GHVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
G + +++ Y IL ++ +I + V ++G +GSGKST ++ LRL
Sbjct: 18 GQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE- 74
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN-EDIEWAAKQ 565
G+I IDG + + R+ G + Q+ + + N+ P + ++I A +
Sbjct: 75 GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD---PNAAHSDQEIWKVADE 131
Query: 566 AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
+ I P + ++ D +LS G KQ + +AR++L ILLLDE ++ LD +
Sbjct: 132 VGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY 191
Query: 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH-KGRL 682
++ L DC TVI+ R+ + D+ +VI++ ++ + + EL H
Sbjct: 192 QIIRRTLKQAFADC----TVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADR 247
Query: 683 YAKLVKRQTES 693
+ +
Sbjct: 248 FVAGFIGSPKM 258
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 3e-44
Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 29/249 (11%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ ++++Y L + + I+ EV AI+G +G GKST + +PS G+I
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 510 YIDGFPLTD--LDIRWLREKIGFVGQEP--QLLQMDIKSNIMYG-----CPKDVKNEDIE 560
D P+ I LRE IG V Q+P QL + ++ +G P+D + ++
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 561 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
A K+ + LS GQK+R+AIA ++ +P +L+LDE T+ LD
Sbjct: 126 NALKRTGIEHLKDKPT---------HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP 176
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRII------EVGNH 673
+ +L ++ + T+I+ H + + D + V+ +GR+I EV
Sbjct: 177 MGVSEIMKLLVEMQKELGI--TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
Query: 674 AELLHKGRL 682
E++ K L
Sbjct: 235 KEVIRKVNL 243
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 4e-43
Identities = 57/250 (22%), Positives = 103/250 (41%), Gaps = 32/250 (12%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
+Q I + IL + I + + GL+G+GK+T +N+L + G +
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 510 YIDGFPL--TDLDIRWLREKIGFVGQEPQLLQMDIKSNI------------MYGCPKDVK 555
+ G +R+ IGFV L + G +D+
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHS---LLEKFQEGERVIDVVISGAFKSIGVYQDID 135
Query: 556 NEDIEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDE 613
+E A + +L L G + LS G+KQR+ IARA++ P +L+LDE
Sbjct: 136 DEIRNEAHQ-------LLKL-VGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDE 187
Query: 614 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGN 672
+ LD + + +L +L + T +I + H + I +I+++ DG+ I+ G
Sbjct: 188 PAAGLDFIARESLLSILDSLSDSYPTL-AMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246
Query: 673 HAELLHKGRL 682
++L +
Sbjct: 247 VEDILTSENM 256
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 2e-42
Identities = 74/235 (31%), Positives = 122/235 (51%), Gaps = 26/235 (11%)
Query: 450 VQFVNISFHYPS-RPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
V+ N++ Y + L +V L I+ E V+I+G SGSGKST +N++ L +P++G+
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 509 IYIDGFPLTDLD------IRWLREKIGFVGQEPQLL-QMDIKSNIM----YGCPKDVKNE 557
+YID DLD IR R+KIGFV Q+ L+ + N+ + + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIR--RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 558 DIEWAAKQAYVHEFILSLPCGYETLVDDDL---LSGGQKQRIAIARAILRDPAILLLDEA 614
+ A + L + E + LSGGQ+QR+AIARA+ +P I+L D+
Sbjct: 120 ERRKRALEC------LKM-AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 615 TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 669
T ALDS++ + +L L + +TV+V+ H ++ + +RI+ + DG +
Sbjct: 173 TWALDSKTGEKIMQLLKKLNE--EDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 3e-42
Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 30/242 (12%)
Query: 450 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
++ NI+ + T+ LN+V L + A ++ ++G SG+GKST + + L P++G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 509 IYIDGFPLTDLD---IRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDI 559
+ +DG LT L + R +IG + Q LL + N+ PK
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK------- 137
Query: 560 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSA 617
+ V E +LSL G D LSGGQKQR+AIARA+ +P +LL D+ATSA
Sbjct: 138 --DEVKRRVTE-LLSL-VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193
Query: 618 LDSESEHYVKGVLHALR--NDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHA 674
LD + + +L L+ N + T+++I H + +K + D + VI +G +IE +
Sbjct: 194 LDPAT---TRSILELLKDINR-RLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS 249
Query: 675 EL 676
E+
Sbjct: 250 EV 251
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 5e-42
Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 28/240 (11%)
Query: 450 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
++ VN+S + L +V L I E + + G +GSGKST + ++ L EP+ G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 508 QIYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYG-----CPKDVKNEDIE 560
+ DG +R IG Q P Q + + + +D ++
Sbjct: 63 DVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV-PLVK 118
Query: 561 WAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSAL 618
A + + L +++ D LSGG+K+R+AIA I+ +P IL+LDE L
Sbjct: 119 KAMEF-------VGLD--FDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGL 169
Query: 619 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELL 677
D E + + ++ + +TVI+I+H + T+ VDR+VV++ G+ + G E L
Sbjct: 170 DREGKTDLLRIVEKWK---TLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 5e-41
Identities = 46/236 (19%), Positives = 87/236 (36%), Gaps = 27/236 (11%)
Query: 450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
+Q N+ + L ++ L + E V I+G +GSGK+T + + L P G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-LPYSGN 59
Query: 509 IYIDGFPLTDLDIRWLREKIGFVGQEPQL--LQMDIKSNIMYGC-PKDVKNEDIEWAAKQ 565
I+I+G +++R +R I + P+ + + + + K + + K
Sbjct: 60 IFING-----MEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLK- 113
Query: 566 AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 625
L L L S GQ + + A+ P I+ LDE +D+ H
Sbjct: 114 ------ALKLGEEILRRKLYKL-SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHV 166
Query: 626 VKGVLHALRNDCKTKRTVIVIAHRLST-IKAVDRIVVIDDGRIIE-VGNHAELLHK 679
+ + + I++ H L + G ++ + +ELL
Sbjct: 167 ISRYIKEY------GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 148 bits (377), Expect = 5e-41
Identities = 70/259 (27%), Positives = 124/259 (47%), Gaps = 49/259 (18%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M + N +F + +R P LN + +I +VA+VG G GKS+ ++ LL + +
Sbjct: 1 MNSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE 59
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK----------- 555
G + I G + +V Q+ + ++ NI++GC +
Sbjct: 60 GHVAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACAL 106
Query: 556 NEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDE 613
D+E LP G T + + LSGGQKQR+++ARA+ + I L D+
Sbjct: 107 LPDLE-------------ILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 153
Query: 614 ATSALDSE-SEHYVKGVLH---ALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 669
SA+D+ +H + V+ L+N +T I++ H +S + VD I+V+ G+I E
Sbjct: 154 PLSAVDAHVGKHIFENVIGPKGMLKN-----KTRILVTHSMSYLPQVDVIIVMSGGKISE 208
Query: 670 VGNHAELLHKGRLYAKLVK 688
+G++ ELL + +A+ ++
Sbjct: 209 MGSYQELLARDGAFAEFLR 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 8e-41
Identities = 56/257 (21%), Positives = 107/257 (41%), Gaps = 53/257 (20%)
Query: 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
V N++ + P+L + IE +++A+ G +G+GK++ + +++ EPS+G
Sbjct: 5 TEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 508 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK-----------N 556
+I G +I F Q ++ IK NI++G D
Sbjct: 64 KIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLE 110
Query: 557 EDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEA 614
EDI ++ + LSGGQ+ RI++ARA+ +D + LLD
Sbjct: 111 EDIS-------------KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 157
Query: 615 TSALDSES-----EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 669
LD + E V ++ +T I++ ++ +K D+I+++ +G
Sbjct: 158 FGYLDVLTEKEIFESCVCKLMA--------NKTRILVTSKMEHLKKADKILILHEGSSYF 209
Query: 670 VGNHAELLHKGRLYAKL 686
G +EL + ++
Sbjct: 210 YGTFSELQNLQPDFSSK 226
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 1e-40
Identities = 59/232 (25%), Positives = 111/232 (47%), Gaps = 29/232 (12%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ NI IL + L+++ E V+I+G SGSGKST + +L L P++G++
Sbjct: 5 LRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 510 YIDGFPLTDLD------IRWLREKIGFVGQEPQLL-QMDIKSNIM----Y-GCPKDVKNE 557
+++G + + +R K+GFV Q L+ ++ N++ G PK E
Sbjct: 62 FLEGKEVDYTNEKELSLLR--NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKE 119
Query: 558 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 617
E+ + + + + P LSGG++QR+AIARA+ +P +L DE T
Sbjct: 120 RGEYLLSELGLGDKLSRKP---------YELSGGEQQRVAIARALANEPILLFADEPTGN 170
Query: 618 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 669
LDS + V + + + +++++ H + R + + DG+++
Sbjct: 171 LDSANTKRVMDIFLKIN---EGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 8e-40
Identities = 77/222 (34%), Positives = 113/222 (50%), Gaps = 24/222 (10%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWL 524
+L + + I EVV ++G SGSGKSTF+ L L + +G+I IDG L ++ +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 525 REKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAY-------VHEFILSLP 576
RE++G V Q L M + +NI P V+ E A +A + + + P
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLA-PMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP 157
Query: 577 CGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 636
D LSGGQ QR+AIARA+ +P I+L DE TSALD E V VL ++
Sbjct: 158 ---------DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLSVMKQL 205
Query: 637 CKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
T++V+ H + + V DR++ +D G IIE G +L
Sbjct: 206 ANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 7e-39
Identities = 57/258 (22%), Positives = 107/258 (41%), Gaps = 53/258 (20%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
++SF S P+L + IE +++A+ G +G+GK++ + +++ EPS+G+I G
Sbjct: 40 SLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
Query: 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK-----------NEDIEWA 562
+I F Q ++ IK NI+ G D EDI
Sbjct: 100 -------------RISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDIS-- 143
Query: 563 AKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
++ + LSGGQ+ RI++ARA+ +D + LLD LD
Sbjct: 144 -----------KFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
Query: 621 ES-----EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 675
+ E V ++ +T I++ ++ +K D+I+++ +G G +E
Sbjct: 193 LTEKEIFESCVCKLMA--------NKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE 244
Query: 676 LLHKGRLYAKLVKRQTES 693
L + ++ +
Sbjct: 245 LQNLRPDFSSKLMGCDSF 262
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 139 bits (354), Expect = 2e-37
Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 26/229 (11%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--------- 517
+L V L A +V++I+G SGSGKSTF+ + L +PS+G I ++G +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 518 ----DLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 572
+R LR ++ V Q L M + N+M P V A ++A
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-PIQVLGLSKHDARERA---LKY 136
Query: 573 LSLPCGYETLVDDDL---LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 629
L+ G + LSGGQ+QR++IARA+ +P +LL DE TSALD E V V
Sbjct: 137 LAK-VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE---LVGEV 192
Query: 630 LHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELL 677
L ++ + +T++V+ H + + V ++ + G+I E G+ ++
Sbjct: 193 LRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 1e-36
Identities = 48/244 (19%), Positives = 88/244 (36%), Gaps = 38/244 (15%)
Query: 437 LSEGVKLQRLMGHVQFVNISFHYPS---RPTVPILNHVCLTIEANEVVAIVGLSGSGKST 493
L + + +F YPS +LN +E++ ++G +G+GK+T
Sbjct: 334 LQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTT 393
Query: 494 FVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGCP 551
+ LL +P +GQ + L++ +KI QL I+ +
Sbjct: 394 LIKLLAGALKPDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFL---N 444
Query: 552 KDVKNEDIE----WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607
+ + ++ V LSGG+ QR+AI A+
Sbjct: 445 PQFQTDVVKPLRIDDIIDQEVQH-----------------LSGGELQRVAIVLALGIPAD 487
Query: 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGR 666
I L+DE ++ LDSE V+ K+T ++ H + D+++V +
Sbjct: 488 IYLIDEPSAYLDSEQRIICSKVIRRFIL--HNKKTAFIVEHDFIMATYLADKVIVFEGIP 545
Query: 667 IIEV 670
Sbjct: 546 SKNA 549
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-33
Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 50/243 (20%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI---- 509
+++ Y + H T +V+ +VG +G GKST + +L +P+ G+
Sbjct: 82 HVTHRYSA---NSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPP 138
Query: 510 -------YIDGFPLTDLDIRWLREKIGFVGQEP--QLLQMDIKSNIMYGC-----PKDVK 555
Y G L + + L + I + + + IK + +
Sbjct: 139 EWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKS 198
Query: 556 NEDIEWAAKQ--------AYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607
ED++ K + + LSGG+ QR AI + +++
Sbjct: 199 PEDVKRYIKILQLENVLKRDIEK-----------------LSGGELQRFAIGMSCVQEAD 241
Query: 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGR 666
+ + DE +S LD + +R+ + VI + H LS + + D + +I
Sbjct: 242 VYMFDEPSSYLDVKQ---RLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298
Query: 667 IIE 669
+
Sbjct: 299 SVY 301
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 134 bits (341), Expect = 8e-36
Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 20/216 (9%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
L + IE E+ ++G +G+GK+T + ++ L +PS G + + G + + + +R+
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89
Query: 528 IGFVGQEPQL-LQMDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 581
I ++ +E M + Y E +E A + A + E I Y
Sbjct: 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTY-- 147
Query: 582 LVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
S G +++ IARA++ +P + +LDE TS LD + V+ +L +
Sbjct: 148 -------SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE---GL 197
Query: 642 TVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 676
T++V +H + ++ + DRI +I +G I+E G EL
Sbjct: 198 TILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 1e-34
Identities = 63/234 (26%), Positives = 97/234 (41%), Gaps = 48/234 (20%)
Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
V + + Y S L I+ EV+ IVG +G GK+TFV +L + EP++G+
Sbjct: 287 LVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 342
Query: 509 IYIDG-----FPLTDLDIR-----WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 558
I D D L + +L K+ ++ K + D
Sbjct: 343 IEWDLTVAYKPQYIKADYEGTVYELLSKID-----ASKLNSNFYKTELL----KPLGIID 393
Query: 559 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 618
+ V+E LSGG+ QR+AIA +LRD I LLDE ++ L
Sbjct: 394 L----YDREVNE-----------------LSGGELQRVAIAATLLRDADIYLLDEPSAYL 432
Query: 619 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
D E V + L K ++T +V+ H + I V DR++V +G + G
Sbjct: 433 DVEQRLAVSRAIRHLME--KNEKTALVVEHDVLMIDYVSDRLMVF-EGEPGKYG 483
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 4e-32
Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 23/227 (10%)
Query: 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS------D 506
+ Y + + ++ VV IVG +G+GKST V +L P+
Sbjct: 25 EDCVHRYGVNA---FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDS 81
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQ 565
I F +L + + K G + + Q D+ + G ++ + E +
Sbjct: 82 WDGVIRAFRGNELQNYFEKLKNGEIRPVVKP-QYVDLIPKAVKGKVIELLKKADETGKLE 140
Query: 566 AYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
V L E +++ ++ LSGG+ QR+AIA A+LR+ DE +S LD
Sbjct: 141 EVVKALEL------ENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQR 194
Query: 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIE 669
+ L + ++V+V+ H L+ + + D I V+ +
Sbjct: 195 LNAARAIRRLS---EEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVY 238
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-34
Identities = 56/234 (23%), Positives = 95/234 (40%), Gaps = 23/234 (9%)
Query: 450 VQFVNISFHYPSRPT-----VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504
+ VN+ + + ++ VV IVG +G+GK+T V +L P
Sbjct: 84 ISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIP 143
Query: 505 S------DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 558
+ I F +L + R K G + + +D+ + G +++ +
Sbjct: 144 NLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV 203
Query: 559 IEWAAKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATS 616
E + V E L E ++D +L LSGG+ QR+AIA A+LR DE +S
Sbjct: 204 DEVGKFEEVVKELEL------ENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSS 257
Query: 617 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIE 669
LD V V+ L + V+V+ H L+ + + D I V+ +
Sbjct: 258 YLDIRQRLKVARVIRRLA---NEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVY 308
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 6e-33
Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 48/234 (20%)
Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
V++ + Y S L I EV+ IVG +G GK+TFV +L + EP++G+
Sbjct: 357 LVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 412
Query: 509 IYIDG---F--PLTDLDIR-----WLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 558
+ D + + L + +L K+ ++ K + D
Sbjct: 413 VEWDLTVAYKPQYIKAEYEGTVYELLSKID-----SSKLNSNFYKTELL----KPLGIID 463
Query: 559 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSAL 618
+ V + LSGG+ QR+AIA +LRD I LLDE ++ L
Sbjct: 464 L----YDRNVED-----------------LSGGELQRVAIAATLLRDADIYLLDEPSAYL 502
Query: 619 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
D E V + L K ++T +V+ H + I V DR++V +G G
Sbjct: 503 DVEQRLAVSRAIRHLME--KNEKTALVVEHDVLMIDYVSDRLIVF-EGEPGRHG 553
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 4e-34
Identities = 40/214 (18%), Positives = 84/214 (39%), Gaps = 38/214 (17%)
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--------D 518
L + E++ I+G +G GK+TF +L+ +G + + L+ +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPN 342
Query: 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCG 578
D +++ + ++ + K + + ++ V++
Sbjct: 343 YDGT-VQQYLENASKDALSTSSWFFEEVT----KRLNLHRL----LESNVND-------- 385
Query: 579 YETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638
LSGG+ Q++ IA + ++ + +LD+ +S LD E + V + + +
Sbjct: 386 ---------LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTR--E 434
Query: 639 TKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVG 671
K +I H LS + DRI+V G + G
Sbjct: 435 RKAVTFIIDHDLSIHDYIADRIIVF-KGEPEKAG 467
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 6e-32
Identities = 42/209 (20%), Positives = 85/209 (40%), Gaps = 25/209 (11%)
Query: 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR-EKIGFVG 532
T + N ++ ++G +G GK+T + +L P+ G + D ++ R ++I
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEVLKRFRGKEIYNYF 78
Query: 533 QEP---------QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 583
+E ++ ++ S + G ++ + E K + L
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNM------TNLW 132
Query: 584 DDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
+ D LSGG QR+ +A ++LR+ + + D+ +S LD + + L +
Sbjct: 133 NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL----LKNK 188
Query: 642 TVIVIAHRLSTIKAV-DRIVVIDDGRIIE 669
VIV+ H L + + D I +I +
Sbjct: 189 YVIVVDHDLIVLDYLTDLIHIIYGESSVY 217
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-33
Identities = 44/209 (21%), Positives = 84/209 (40%), Gaps = 32/209 (15%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
L + +TIE VV G +G GK+T + + +P G+I +G I ++ K
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGV-----PITKVKGK 79
Query: 528 IGFVGQEPQL-LQMDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 581
I F+ +E + ++ ++ + +YG + +I A + V +
Sbjct: 80 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLD----------- 126
Query: 582 LVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 639
+ L LS G +R+ +A +L + I +LD+ A+D +S+H V + + +
Sbjct: 127 -LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 185
Query: 640 KRTVIVIAHRLSTIKAVDRIVVIDDGRII 668
+I LS D +
Sbjct: 186 --VIISSREELSY---CDVNENLHKYSTK 209
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 5e-31
Identities = 66/250 (26%), Positives = 118/250 (47%), Gaps = 36/250 (14%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M + N+S + V L++V + IE E I+G SG+GK+TF+ ++ L PS
Sbjct: 1 MVRIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 507 GQIYIDGFPLTDLDIRWLREK---IGFVGQE----PQLLQMDIKSNIMYG-----CPKDV 554
G++Y D + + + IG V Q P + NI + K+
Sbjct: 60 GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN---LTAFENIAFPLTNMKMSKEE 116
Query: 555 KNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLD 612
+ +E AK IL + +++ LSG Q+QR+A+ARA+++DP++LLLD
Sbjct: 117 IRKRVEEVAK-------ILDI----HHVLNHFPRELSGAQQQRVALARALVKDPSLLLLD 165
Query: 613 EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV---DRIVVIDDGRIIE 669
E S LD+ + ++ +++ T++V++H DR+ V+ G++++
Sbjct: 166 EPFSNLDARMRDSARALVKEVQSRLGV--TLLVVSH--DPADIFAIADRVGVLVKGKLVQ 221
Query: 670 VGNHAELLHK 679
VG +L
Sbjct: 222 VGKPEDLYDN 231
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 1e-30
Identities = 43/221 (19%), Positives = 87/221 (39%), Gaps = 22/221 (9%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525
L + + A E++ +VG +G+GKST + + + G I G PL L
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLA 72
Query: 526 EKIGFVGQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 584
++ Q+ + + + E + A + + + +
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-------GRSTN 125
Query: 585 DDLLSGGQKQRIAIARAIL-------RDPAILLLDEATSALDSESEHYVKGVLHALRNDC 637
LSGG+ QR+ +A +L +LLLDE ++LD + + L
Sbjct: 126 Q--LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS---ALDKILSALS 180
Query: 638 KTKRTVIVIAHRLS-TIKAVDRIVVIDDGRIIEVGNHAELL 677
+ +++ +H L+ T++ R ++ G+++ G E+L
Sbjct: 181 QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 8e-28
Identities = 78/251 (31%), Positives = 128/251 (50%), Gaps = 45/251 (17%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 502
M ++ NI + + LN++ L I+ E +A++G SGSGKST LL +Y
Sbjct: 1 MVEIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKST----LLYTIAGIY 53
Query: 503 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE----PQLLQMDIKSNIMYG-----CPKD 553
+P+ G+IY D +T+L + R +G V Q P M + NI + P++
Sbjct: 54 KPTSGKIYFDEKDVTELPPK-DRN-VGLVFQNWALYPH---MTVYKNIAFPLELRKAPRE 108
Query: 554 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLL 611
++ + AK +L + + L++ LSGGQ+QR+AIARA++++P +LLL
Sbjct: 109 EIDKKVREVAK-------MLHI----DKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLL 157
Query: 612 DEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV---DRIVVIDDGRII 668
DE S LD+ V+ L L+ + T + + H +A+ DRI VI +G I+
Sbjct: 158 DEPLSNLDALLRLEVRAELKRLQKELGI--TTVYVTH--DQAEALAMADRIAVIREGEIL 213
Query: 669 EVGNHAELLHK 679
+VG E+ +K
Sbjct: 214 QVGTPDEVYYK 224
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-27
Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 41/227 (18%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
N+ F+Y + + + + +++A++G +G GKST ++LLL ++ P G+I +
Sbjct: 9 NLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ 66
Query: 514 FPLTDLDIRWLREKIGFVGQEPQ----LLQMDIKSNIMYGC-P-----KDVKNEDIEWAA 563
IGFV Q +DI ++ G K+ D + A
Sbjct: 67 -------------SIGFVPQFFSSPFAYSVLDI---VLMGRSTHINTFAKPKSHDYQ-VA 109
Query: 564 KQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
QA L L + LSGGQ+Q I IARAI + ++LLDE TSALD
Sbjct: 110 MQA------LDY-LNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162
Query: 622 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRI 667
++ V +L L TV+ H+ + + A+ ++ ++++
Sbjct: 163 NQDIVLSLLIDLAQS--QNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 3e-27
Identities = 64/243 (26%), Positives = 107/243 (44%), Gaps = 50/243 (20%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEPS 505
++FV + YP + V I E+V ++G SGSGK+T +LR L P+
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTT----ILRLIAGLERPT 68
Query: 506 DGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYG-----CPKDVKNEDI 559
G ++I G +TDL + + +G V Q L Q M + N+ +G PKD + +
Sbjct: 69 KGDVWIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARV 126
Query: 560 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619
+ + + P LSGGQ+QR+A+ARA+ P +LL DE +A+D
Sbjct: 127 RELLRFMRLESYANRFP---------HELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
Query: 620 SESEHYVKGVLHALRNDCK-----TKRTVIVIAH------RLSTIKAVDRIVVIDDGRII 668
+ LR + T + + H ++ DR++V+ +G +
Sbjct: 178 -------TQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVA-----DRVLVLHEGNVE 225
Query: 669 EVG 671
+ G
Sbjct: 226 QFG 228
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 3e-26
Identities = 66/257 (25%), Positives = 116/257 (45%), Gaps = 63/257 (24%)
Query: 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEP 504
+ ++S + + P+LN + L+++ E++ I+G SG GK+T LLR +P
Sbjct: 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTT----LLRCLAGFEQP 56
Query: 505 SDGQIYIDGFPLTDLDIRWLREK--IGFVGQE----PQLLQMDIKSNIMYGCPKDVKNED 558
G+I + G + + + +G++ QE P + + NI YG + N
Sbjct: 57 DSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP---HLTVYRNIAYG----LGNGK 109
Query: 559 IEWAAKQAYVHEFILSLPCGYETLVD-DDL-------LSGGQKQRIAIARAILRDPAILL 610
A ++ + +L L +L LSGGQ+QR A+ARA+ DP ++L
Sbjct: 110 GRTAQERQRIEA-MLE-------LTGISELAGRYPHELSGGQQQRAALARALAPDPELIL 161
Query: 611 LDEATSALDSESEHYVKGVLHALRNDCKT--KR---TVIVIAH------RLSTIKAVDRI 659
LDE SALD + + +R D + + + ++H + + DRI
Sbjct: 162 LDEPFSALD-------EQLRRQIREDMIAALRANGKSAVFVSHDREEALQYA-----DRI 209
Query: 660 VVIDDGRIIEVGNHAEL 676
V+ GRI++ + EL
Sbjct: 210 AVMKQGRILQTASPHEL 226
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 7e-26
Identities = 68/264 (25%), Positives = 111/264 (42%), Gaps = 71/264 (26%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 502
M ++ VN+ ++ V ++ V ++ E VA++G SG GK+T L +Y
Sbjct: 1 MPSIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTT----TLLMLAGIY 53
Query: 503 EPSDGQIYIDGFPLTDL---DIRWLREKIGFVGQE----PQLLQMDIKSNIMYG-----C 550
+P+ G+IY D + D+ RE +G V Q P M + NI +
Sbjct: 54 KPTSGEIYFDDVLVNDIPPKY----RE-VGMVFQNYALYPH---MTVFENIAFPLRARRI 105
Query: 551 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAI 608
KD + + A+ L + + L+D LSGGQ+QR+A+ARA+++ P +
Sbjct: 106 SKDEVEKRVVEIAR-------KLLI----DNLLDRKPTQLSGGQQQRVALARALVKQPKV 154
Query: 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH-RLST---------IKAV-- 656
LL DE S LD+ LR R I L +A+
Sbjct: 155 LLFDEPLSNLDA-----------NLRM---IMRAEIKHLQQELGITSVYVTHDQAEAMTM 200
Query: 657 -DRIVVIDDGRIIEVGNHAELLHK 679
RI V + G++++ G E+
Sbjct: 201 ASRIAVFNQGKLVQYGTPDEVYDS 224
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 1e-25
Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 29/219 (13%)
Query: 469 NHVCLTIE-ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
+ + E + ++G +G+GKS F+ L+ + +P G++ ++G +T L R
Sbjct: 14 FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRG 71
Query: 528 IGFVGQEPQLL-QMDIKSNIMYG---CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 583
IGFV Q+ L + + NI YG + ++ + A++ + + P
Sbjct: 72 IGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP------- 124
Query: 584 DDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV 643
LSGG++QR+A+ARA++ P +LLLDE SA+D +++ + L ++ + +
Sbjct: 125 --ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR--EFDVPI 180
Query: 644 IVIAH------RLSTIKAVDRIVVIDDGRIIEVGNHAEL 676
+ + H L+ D + V+ +GRI+E G EL
Sbjct: 181 LHVTHDLIEAAMLA-----DEVAVMLNGRIVEKGKLKEL 214
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 3e-25
Identities = 69/265 (26%), Positives = 112/265 (42%), Gaps = 67/265 (25%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 502
M V+ V++ + V ++ L ++ E + ++G SG GK+T LR L
Sbjct: 1 MAGVRLVDVWKVFGEVTAVREMS---LEVKDGEFMILLGPSGCGKTT----TLRMIAGLE 53
Query: 503 EPSDGQIYIDGFPLTDLDIRWLRE----KIGFVGQE----PQLLQMDIKSNIMYG----- 549
EPS GQIYI + D + I V Q P M + NI +
Sbjct: 54 EPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPH---MTVYDNIAFPLKLRK 110
Query: 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA 607
P+ ++ + A+ +L L L++ LSGGQ+QR+A+ RAI+R P
Sbjct: 111 VPRQEIDQRVREVAE-------LLGL----TELLNRKPRELSGGQRQRVALGRAIVRKPQ 159
Query: 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH-RLST---------IKAV- 656
+ L+DE S LD++ LR R + +L ++A+
Sbjct: 160 VFLMDEPLSNLDAK-----------LRVR---MRAELKKLQRQLGVTTIYVTHDQVEAMT 205
Query: 657 --DRIVVIDDGRIIEVGNHAELLHK 679
DRI V++ G + +VG+ E+ K
Sbjct: 206 MGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 5e-25
Identities = 75/264 (28%), Positives = 124/264 (46%), Gaps = 71/264 (26%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 502
M V+ N++ + + +N + LTI+ E + ++G SG GK+T LR L
Sbjct: 9 MVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTT----TLRMIAGLE 61
Query: 503 EPSDGQIYIDGFPLTDL---DIRWLREKIGFVGQE----PQLLQMDIKSNIMYG-----C 550
EP++G+IY +T L D R I V Q P M + NI +
Sbjct: 62 EPTEGRIYFGDRDVTYLPPKD----RN-ISMVFQSYAVWPH---MTVYENIAFPLKIKKF 113
Query: 551 PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAI 608
PKD ++ + WAA+ +L + E L++ LSGGQ+QR+A+ARAI+ +P +
Sbjct: 114 PKDEIDKRVRWAAE-------LLQI----EELLNRYPAQLSGGQRQRVAVARAIVVEPDV 162
Query: 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH-RLST---------IKAV-- 656
LL+DE S LD++ LR R I +L ++A+
Sbjct: 163 LLMDEPLSNLDAK-----------LRVA---MRAEIKKLQQKLKVTTIYVTHDQVEAMTM 208
Query: 657 -DRIVVIDDGRIIEVGNHAELLHK 679
DRI V++ G+++++G+ E+ +
Sbjct: 209 GDRIAVMNRGQLLQIGSPTEVYLR 232
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 2e-24
Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 63/252 (25%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEPS 505
++ ++S + + L+++ L +E+ E I+G +G+GK+ L + P
Sbjct: 2 IEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTL----FLELIAGFHVPD 53
Query: 506 DGQIYIDGFPLTDLDIRWLREKIGFVGQE----PQLLQMDIKSNIMYG--CPKDVKNEDI 559
G+I +DG +TDL + I FV Q P M++K N+ +G K + +
Sbjct: 54 SGRILLDGKDVTDLSPE--KHDIAFVYQNYSLFPH---MNVKKNLEFGMRMKKIKDPKRV 108
Query: 560 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619
A+ + + P LSGG++QR+A+ARA++ +P ILLLDE SALD
Sbjct: 109 LDTARDLKIEHLLDRNP---------LTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
Query: 620 SESEHYVKGVLHALRNDCKT--KR-------TVIVIAH------RLSTIKAVDRIVVIDD 664
+ + + + TV+ I H ++ DRI V+ D
Sbjct: 160 ------PR-----TQENAREMLSVLHKKNKLTVLHITHDQTEARIMA-----DRIAVVMD 203
Query: 665 GRIIEVGNHAEL 676
G++I+VG E+
Sbjct: 204 GKLIQVGKPEEI 215
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 3e-23
Identities = 76/266 (28%), Positives = 110/266 (41%), Gaps = 75/266 (28%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LY 502
M VQ N++ + V + + L I E V VG SG GKST LLR L
Sbjct: 1 MASVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKST----LLRMIAGLE 53
Query: 503 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQE----PQLLQMDIKSNIMYG-----CPKD 553
+ G ++I + D +G V Q P + + N+ +G K+
Sbjct: 54 TITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPH---LSVAENMSFGLKLAGAKKE 108
Query: 554 VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDL-------LSGGQKQRIAIARAILRDP 606
V N+ + A+ +L L L LSGGQ+QR+AI R ++ +P
Sbjct: 109 VINQRVNQVAE-------VLQL---------AHLLDRKPKALSGGQRQRVAIGRTLVAEP 152
Query: 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH-RLST---------IKAV 656
++ LLDE S LD+ ALR R I H RL ++A+
Sbjct: 153 SVFLLDEPLSNLDA-----------ALRVQ---MRIEISRLHKRLGRTMIYVTHDQVEAM 198
Query: 657 ---DRIVVIDDGRIIEVGNHAELLHK 679
D+IVV+D GR+ +VG EL H
Sbjct: 199 TLADKIVVLDAGRVAQVGKPLELYHY 224
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 6e-20
Identities = 56/231 (24%), Positives = 107/231 (46%), Gaps = 37/231 (16%)
Query: 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527
L+ V +++ +V I+G +GSGKST +N++ + +G++Y + +T+ + +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE----PAE 78
Query: 528 IGFVG-----QEPQLL-QMDIKSNIMYGC-------------PKDVKNEDIEWAAKQAY- 567
+ G Q PQ L +M + N++ G K + E E ++A+
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE--EEMVEKAFK 136
Query: 568 VHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 625
+ EF+ L D LSGGQ + + I RA++ +P ++++DE + + H
Sbjct: 137 ILEFL-----KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 626 VKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAE 675
+ + L+ T ++I HRL + D + V+ +G+II G E
Sbjct: 192 IFNHVLELKAK---GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 87.4 bits (216), Expect = 6e-18
Identities = 55/312 (17%), Positives = 102/312 (32%), Gaps = 73/312 (23%)
Query: 379 SIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLS 438
I++ ++ + ++ L A + + + N +
Sbjct: 364 KIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVG 423
Query: 439 EGVKLQRLMG-HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 497
+ G + S Y ++ +LN L ++ I G +G GKST +
Sbjct: 424 PNFDDEEDEGEDLCNCEFSLAYGAKI---LLNKTQLRLKRARRYGICGPNGCGKSTLMRA 480
Query: 498 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 557
+ +DGFP + + +V + D
Sbjct: 481 IAN--------GQVDGFPTQE------ECRTVYVEHDIDGTHSDTS-------------- 512
Query: 558 DIEWAAKQAYVHEFILSLPCGYETLVDDDL----------------LSGGQKQRIAIARA 601
V +F+ G + + D L LSGG K ++A+ARA
Sbjct: 513 ----------VLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARA 562
Query: 602 ILRDPAILLLDEATSALDSES----EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV- 656
+LR+ ILLLDE T+ LD+ + +Y+ T I I+H + V
Sbjct: 563 VLRNADILLLDEPTNHLDTVNVAWLVNYLN----------TCGITSITISHDSVFLDNVC 612
Query: 657 DRIVVIDDGRII 668
+ I+ + ++
Sbjct: 613 EYIINYEGLKLR 624
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 1e-13
Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 14/155 (9%)
Query: 515 PLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILS 574
P+ +D W+ + ++D+K + G + + ++IE + L
Sbjct: 836 PMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIE-----EHCSMLGLD 890
Query: 575 LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 634
+ + LSGGQK ++ +A + P +++LDE T+ LD +S + + AL+
Sbjct: 891 PEIVSHSRIRG--LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS---LGALSKALK 945
Query: 635 NDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 668
+ VI+I H K + + + + DGR+
Sbjct: 946 E---FEGGVIIITHSAEFTKNLTEEVWAVKDGRMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511
N+ F YP P + + + +A++G +G+GKST +N+L P+ G++Y
Sbjct: 676 NMEFQYPGTSK-PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT 732
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 74.4 bits (184), Expect = 4e-15
Identities = 51/240 (21%), Positives = 107/240 (44%), Gaps = 37/240 (15%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
++ +Y + + + + L + ++V ++G +G+GK+T ++ + L G+I +G
Sbjct: 11 SLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67
Query: 514 FPLTDLDIRWL-REKIGFVGQEPQLL-QMDIKSNIMYGC----PKDVKNEDIEWAAKQAY 567
+T+ + R I V + ++ ++ + N+M G K+ D+EW
Sbjct: 68 QDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW------ 121
Query: 568 VHEF--IL----SLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
+ L G LSGG++Q +AI RA++ P +L++DE + L
Sbjct: 122 IFSLFPRLKERLKQLGGT--------LSGGEQQMLAIGRALMSRPKLLMMDEPSLGL--- 170
Query: 622 SEHYVKGVLHALRNDCKTKRTVIVI---AHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 678
+ V V ++ + T++++ A +K V++ G+I+ G +ELL
Sbjct: 171 APILVSEVFEVIQKINQEGTTILLVEQNALG--ALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 7e-14
Identities = 69/237 (29%), Positives = 106/237 (44%), Gaps = 43/237 (18%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIRW 523
IL V L + EV A++G +G+GKST +L Y G+I +DG + +L
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP-D 75
Query: 524 LREKIG-FVG-QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAY------VHEFILSL 575
R + G F+ Q P + G V + A QA V EF +
Sbjct: 76 ERARKGLFLAFQYPVEVP---------G----VTIANFLRLALQAKLGREVGVAEFWTKV 122
Query: 576 PCGYETL-VDDDLL--------SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
E L D+ L SGG+K+R I + ++ +P +LDE S LD ++ V
Sbjct: 123 KKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVV 182
Query: 627 -KGVLHALRNDCKTKRTVIVIAH--R-LSTIKAVDRIVVIDDGRIIEVGNHAELLHK 679
+GV +A+R +VI H R L+ I+ D++ V+ DGR++ G EL +
Sbjct: 183 ARGV-NAMRGP---NFGALVITHYQRILNYIQ-PDKVHVMMDGRVVATGG-PELALE 233
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 3e-13
Identities = 71/254 (27%), Positives = 111/254 (43%), Gaps = 49/254 (19%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL--RLYEPSDGQIYIDGFPLTDLDIRW 523
IL + L + EV AI+G +GSGKST L YE + G + G L L
Sbjct: 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP-E 92
Query: 524 LREKIG-FVG-QEP---------QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFI 572
R G F+ Q P LQ + + Y + + +F
Sbjct: 93 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLD------------RFDFQ 140
Query: 573 LSLPCGYETL-VDDDLL--------SGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
+ L + +DLL SGG+K+R I + + +P + +LDE+ S LD ++
Sbjct: 141 DLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDAL 200
Query: 624 HYV-KGVLHALRNDCKTKRTVIVIAH--R-LSTIKAVDRIVVIDDGRIIEVGNH---AEL 676
V GV ++LR+ KR+ I++ H R L IK D + V+ GRI++ G+ +L
Sbjct: 201 KVVADGV-NSLRDG---KRSFIIVTHYQRILDYIKP-DYVHVLYQGRIVKSGDFTLVKQL 255
Query: 677 LHKGRLYAKLVKRQ 690
+G Y L ++Q
Sbjct: 256 EEQG--YGWLTEQQ 267
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 65.1 bits (158), Expect = 2e-11
Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 24/166 (14%)
Query: 521 IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE 580
E I V + L + S I ++ +E + Y + +
Sbjct: 180 SGGTEELIEKVKKYKALAREAALSKI-----GELASEIFAEFTEGKYSEVVVRAEENKVR 234
Query: 581 TLVDDD-------LLSGGQKQ------RIAIARAILRDPAILLLDEATSALDSESEHYVK 627
V + LSGG++ R+A++ + + ++L+LDE T LD E +
Sbjct: 235 LFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI 294
Query: 628 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI---DDGRIIEV 670
++ VI+++H A D ++ I + +EV
Sbjct: 295 TIMERYLKK---IPQVILVSHDEELKDAADHVIRISLENGSSKVEV 337
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 3e-10
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 570 EFILSLPCGYETL-VDDDLLSGGQKQRIAIA------RAILRDPAILLLDEATSALDSES 622
E + L +E LSGG++ + +A + + ++L+LDE T LD E
Sbjct: 39 ENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEER 98
Query: 623 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 660
+ ++ VI+++H A D ++
Sbjct: 99 RRKLITIMERYLK---KIPQVILVSHDEELKDAADHVI 133
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 2e-09
Identities = 56/353 (15%), Positives = 97/353 (27%), Gaps = 119/353 (33%)
Query: 388 EQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLM 447
+ + K +L + +D++ + S A +L L S Q E V Q+ +
Sbjct: 39 QDMPKSIL--------SKEEIDHI---IMSKDAVSGTLRLFWTLLSKQ--EEMV--QKFV 83
Query: 448 GHVQFVNISFHY---------PSRPTV-------PILN--------HVC----------- 472
V +N F PS T + N +V
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 473 -LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP---SDGQIYIDGFPLTDLDIRWLREKI 528
L + + V I G+ GSGK+ + Y+ D +I+ WL +
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF------------WL--NL 189
Query: 529 GFVGQEPQLLQM--DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 586
+L+M + I P D H + L
Sbjct: 190 KNCNSPETVLEMLQKLLYQID---PNWTSRSD----------HSSNIKLRIHSIQAELRR 236
Query: 587 LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV--KGVLHALRNDCKTKRTVI 644
LL + +L+L V +A CK +
Sbjct: 237 LLKSKPYEN-----------CLLVLLN------------VQNAKAWNAFNLSCKI----L 269
Query: 645 VIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG---RLYAKLVKRQTESL 694
+ + K V + I + +H+ L L K + + + L
Sbjct: 270 LT----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 3e-09
Identities = 93/659 (14%), Positives = 190/659 (28%), Gaps = 155/659 (23%)
Query: 25 IFTVKIPHFKSKHQFQIISNNKKFKRVSFPITNSAFTDS--GVPNNESNDNIIKFFDYFQ 82
I +V F + + + K I + D + S ++ F
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPK------SILSKEEIDHIIMSKDAVSG--TLRLFWTLL 72
Query: 83 DLVAFIRQVFPGGSW-----WNLSDGQEAENPTAKPITVWI-ALSRMWNLIGRDKWIVLV 136
+ Q F + +S + + + ++I R++N
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN----------- 121
Query: 137 AVASLIVAAVSEITMPRI-----LAEAVFSAQREEAMVFH------KSSRFLVL-LCVTS 184
++ + R+ L +A+ + + ++ K+ + L +C++
Sbjct: 122 -----DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW--VALDVCLSY 174
Query: 185 GIFSGLRSGCF--SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLS 242
+ + F ++ N + + E L LL+Q + T+ S
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEML-QKLLYQ------------IDPNWTSRSDHSS 221
Query: 243 NVI--GNDINMILRNSLQGAGAFINLLTLS--W-PLTLSALLI-CSFL------SIIVSV 290
N+ + I LR L+ LL L +A + C L + +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 291 YGQYQKRASV------LTQECN----AHANNVAQETL------CMMRTVRVYGTEEKE-L 333
S+ LT + + + L R + + ++ L
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 334 GRYKIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKY 393
+ W + + ++ + L + + ++V I P L
Sbjct: 342 ATWDNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI------PTILLS- 393
Query: 394 VLYCEWLIYATWRMVDNL--SSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQ 451
+++ + + +V+ L SL++ E + + + E L H
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEK-QPKESTISIPSIYLELKVKLE--NEYAL--HRS 448
Query: 452 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVG--LSGSGKSTFVNLLLRLYEPSDGQI 509
V+ HY T + + + +G L + L ++
Sbjct: 449 IVD---HYNIPKTFD-SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF------- 497
Query: 510 YIDGFPLTDLDIRWLREKI-------GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA 562
LD R+L +KI G LQ +K Y C D K E +
Sbjct: 498 ---------LDFRFLEQKIRHDSTAWNASGSILNTLQ-QLKFYKPYICDNDPKYERLV-- 545
Query: 563 AKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619
A + F+ + DLL RIA L + +EA +
Sbjct: 546 --NAILD-FLPK--IEENLICSKYTDLL------RIA-----LMAEDEAIFEEAHKQVQ 588
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 586 DLLSGGQKQRI------AIARAILRDPA-ILLLDEATSALDSESEHYVKGVLHALRNDCK 638
D LSGG++ + AIA A++ + ++LDE T LD + + +++
Sbjct: 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSI-- 336
Query: 639 TKRTVIVIAHRLSTIKAVDRIVVI 662
+I+I H D I+ +
Sbjct: 337 --PQMIIITHHRELEDVADVIINV 358
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQ---IYIDGF--PLTDLDIRWLREKIGF 530
+VA+ G GSGKST N L + +DGF L+ R L + G
Sbjct: 24 LVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 588 LSGGQK------QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR 641
LSGG++ +++A +DE S+LD+E++ + VL L +
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL---NK 336
Query: 642 TVIVIAH 648
++ I H
Sbjct: 337 VIVFITH 343
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Length = 178 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 3e-04
Identities = 27/201 (13%), Positives = 52/201 (25%), Gaps = 34/201 (16%)
Query: 481 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM 540
+ I G G GK+T V ++ + + + R I G++
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 541 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600
S + G Y V A
Sbjct: 63 FFTSKKLVG----------------------------SYGVNVQYFEELAIPILERAYRE 94
Query: 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 660
A ++++DE ++ S+ + V + + V+ V I
Sbjct: 95 AKKDRRKVIIIDE-IGKMELFSKKFRDLVRQIMHDP---NVNVVATIPIRDVHPLVKEIR 150
Query: 661 VIDDGRIIEV--GNHAELLHK 679
+ +IE+ N +L
Sbjct: 151 RLPGAVLIELTPENRDVILED 171
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} Length = 916 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 4e-04
Identities = 33/84 (39%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 588 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALR---NDCKTKR 641
LSGG+ QRI +A + + + +LDE T L E + VLH L N
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGN------ 859
Query: 642 TVIVIAHRLSTIKAVDRIVVIDDG 665
TVIVI H L IK D I ID G
Sbjct: 860 TVIVIEHNLDVIKNADHI--IDLG 881
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Length = 842 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 26/100 (26%)
Query: 588 LSGGQKQRIAIA-----RAILRDPAILLLDEATSALDSESEHYVKGVLHALR---NDCKT 639
LSGG+ QRI +A R + +LDE T+ L ++ L L N
Sbjct: 731 LSGGEAQRIKLATELRRSG--RGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGN---- 784
Query: 640 KRTVIVIAHRLSTIKAVDRIVVID--------DGRIIEVG 671
TVI + H++ + A D + +D GR++ G
Sbjct: 785 --TVIAVEHKMQVVAASDWV--LDIGPGAGEDGGRLVAQG 820
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A Length = 972 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 9e-04
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Query: 588 LSGGQKQRIAIARAILRDP---AILLLDEATSALDSESEHYVKGVLHALR---NDCKTKR 641
LSGG+ QR+ +A + R + +LDE T+ L + + VLH L +
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGD------ 899
Query: 642 TVIVIAHRLSTIKAVDRIVVIDDG 665
TV+VI H L IK D I ID G
Sbjct: 900 TVLVIEHNLDVIKTADYI--IDLG 921
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 695 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.98 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.98 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.97 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.97 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.97 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.97 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.96 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.96 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.95 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.95 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.93 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.92 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.92 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.92 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.91 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.91 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.91 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.9 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.89 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.89 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.89 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.89 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.88 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.88 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.87 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.86 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.86 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.85 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.85 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.84 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.83 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.82 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.82 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.82 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.8 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.8 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.79 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.79 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.78 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.78 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.78 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.78 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.77 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.77 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.76 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.75 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.75 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.75 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.74 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.74 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.73 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.73 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.72 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.71 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.7 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.69 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.65 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.63 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.63 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.62 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.62 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.61 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.6 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.6 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.6 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.59 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.59 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.58 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.54 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.52 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.52 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.51 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.5 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.45 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.45 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.45 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.44 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.42 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.41 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.37 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.37 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.36 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.35 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.32 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.29 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 99.28 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.23 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.2 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.2 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.17 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 99.16 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.15 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.15 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.14 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 99.12 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 99.12 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 99.12 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 99.11 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.09 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.09 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.08 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.06 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.0 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.95 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.92 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.9 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.89 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.87 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.87 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.86 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.85 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.83 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.82 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.79 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.75 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.74 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.68 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.67 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.65 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.64 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.63 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.63 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.62 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.62 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.52 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.51 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.45 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.44 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.41 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.33 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.31 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.3 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 98.25 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 98.24 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.21 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.19 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.15 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.12 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.1 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 98.01 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.98 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.94 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.93 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.9 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.9 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.87 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.87 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.87 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.86 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.8 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.76 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.75 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.75 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.74 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.7 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.69 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.68 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.68 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.65 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.61 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.61 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.6 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.53 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.53 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.49 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.49 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.45 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.44 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.44 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.42 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.42 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.35 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.35 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.34 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 97.34 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.33 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.33 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 97.33 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.28 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.26 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.25 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.19 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.14 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.07 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 97.07 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 97.06 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 96.97 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.95 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.95 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.94 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.94 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.88 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.85 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.8 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.77 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.76 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.75 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 96.74 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.73 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.73 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.72 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.68 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.67 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.64 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.62 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.59 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.56 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.53 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.52 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.47 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.46 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.43 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.43 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.42 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.39 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 96.38 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.37 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.36 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.35 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.35 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.31 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.3 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.29 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.29 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.27 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.25 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.24 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.22 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.21 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.2 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.19 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.17 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.15 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 96.15 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.15 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.15 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 96.12 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.07 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.02 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.01 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.0 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.99 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.95 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 95.94 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 95.94 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.93 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 95.93 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.93 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.9 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.89 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.86 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.73 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.71 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.69 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.68 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 95.68 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.66 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.64 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.63 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.63 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 95.63 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 95.62 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.55 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 95.55 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.54 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.54 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.53 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.51 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.5 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.44 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.44 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.42 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.38 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.32 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 95.3 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.25 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 95.25 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.23 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.17 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 95.16 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.13 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 95.13 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.11 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 95.11 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.09 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.07 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.07 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.06 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 95.04 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 95.02 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 95.0 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 94.97 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.97 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 94.95 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 94.94 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 94.94 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 94.94 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 94.94 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 94.94 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.93 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 94.93 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 94.92 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.91 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 94.9 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 94.9 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 94.89 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 94.89 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 94.87 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 94.82 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 94.82 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 94.82 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 94.8 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 94.78 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.78 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 94.76 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 94.75 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 94.73 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 94.72 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 94.71 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 94.71 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 94.7 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 94.69 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 94.69 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 94.67 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 94.65 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.65 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.62 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.61 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 94.61 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 94.61 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 94.6 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 94.56 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 94.56 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 94.55 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 94.54 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 94.52 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.52 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 94.5 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 94.47 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 94.46 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 94.45 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 94.45 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 94.44 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 94.44 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 94.43 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 94.43 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 94.41 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 94.38 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 94.38 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 94.37 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 94.35 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 94.35 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 94.34 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.34 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 94.33 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 94.33 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.32 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 94.28 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 94.27 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 94.27 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 94.24 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 94.24 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 94.24 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 94.24 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 94.23 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 94.21 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 94.19 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 94.19 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 94.18 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 94.15 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 94.13 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 94.12 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 94.12 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 94.11 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 94.1 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 94.08 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 94.06 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 94.06 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 94.06 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.04 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 94.02 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 93.98 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 93.96 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 93.93 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 93.92 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 93.9 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 93.88 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 93.88 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 93.87 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 93.85 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 93.84 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 93.82 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 93.82 | |
| 3l0o_A | 427 | Transcription termination factor RHO; helicase, RH | 93.81 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 93.8 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 93.78 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 93.78 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 93.78 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 93.78 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 93.77 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 93.74 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 93.72 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 93.7 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 93.7 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 93.68 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 93.68 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 93.65 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 93.64 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 93.63 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 93.6 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 93.59 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 93.58 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 93.55 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 93.54 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 93.53 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 93.53 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 93.49 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 93.48 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 93.46 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 93.43 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 93.35 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 93.33 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 93.31 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 93.19 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 93.16 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.14 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 93.1 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 93.1 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 93.01 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 93.0 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 92.96 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 92.95 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 92.91 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 92.89 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 92.76 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 92.75 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 92.72 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 92.72 | |
| 2gks_A | 546 | Bifunctional SAT/APS kinase; transferase, sulfuryl | 92.71 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 92.66 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-103 Score=977.23 Aligned_cols=508 Identities=34% Similarity=0.478 Sum_probs=469.7
Q ss_pred HHHHhhhcccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhc
Q 005467 179 LLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQ 258 (695)
Q Consensus 179 ~~~i~~~i~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~ 258 (695)
.+.++..++.+++.+++.++++++..++|.++|+|++++|++|||++++|++++|+++|++.+++++...+..++..++.
T Consensus 144 ~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~ 223 (1321)
T 4f4c_A 144 AMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQ 223 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHhhccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHH
Q 005467 259 GAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKI 338 (695)
Q Consensus 259 ~v~~~i~l~~~sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~ 338 (695)
++++++++++++|++++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||+|+.+.++|.+
T Consensus 224 ~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 303 (1321)
T 4f4c_A 224 FITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYST 303 (1321)
T ss_dssp HHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhhhccccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhh
Q 005467 339 WLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSI 418 (695)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 418 (695)
..++..+...+.....+.......++..+..++++++|++++..|.+++|++++++.|...+..|+..++..+..+.++.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 383 (1321)
T 4f4c_A 304 AVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQ 383 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888877666555555555555556667778899999999999999999999999999999999999999999999
Q ss_pred cchhhHHHhhccCCccccccc-ccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHH
Q 005467 419 GATEKVFQLIDLLPSNQFLSE-GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 497 (695)
Q Consensus 419 ~a~~rl~~~l~~~~~~~~~~~-~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~L 497 (695)
++++|+++++|.+|+.+..++ +....+..|+|+|+||+|+||+++++++|+||||+|+|||++|||||||||||||+++
T Consensus 384 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~l 463 (1321)
T 4f4c_A 384 GAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISL 463 (1321)
T ss_dssp HHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHH
T ss_pred HHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHH
Confidence 999999999998876543322 2223345678999999999998777789999999999999999999999999999999
Q ss_pred HHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCC
Q 005467 498 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPC 577 (695)
Q Consensus 498 L~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~ 577 (695)
|+|+|+|++|+|++||+|+++++.++||++||||+|||+||++||+|||+|| .+++++|++++||+.|++++||++||+
T Consensus 464 l~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g-~~~~~~~~v~~a~~~a~l~~~i~~lp~ 542 (1321)
T 4f4c_A 464 LLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLG-KEGITREEMVAACKMANAEKFIKTLPN 542 (1321)
T ss_dssp HTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTT-CTTCCHHHHHHHHHHTTCHHHHHHSTT
T ss_pred hccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhh-cccchHHHHHHHHHHccchhHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999 478999999999999999999999999
Q ss_pred Ccccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc
Q 005467 578 GYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 655 (695)
Q Consensus 578 G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~ 655 (695)
||||.|||+ +||||||||||||||+|+||+||||||||||||++||+.|+++|.++. +|||+|+||||++++++
T Consensus 543 G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~----~~~T~iiiaHrls~i~~ 618 (1321)
T 4f4c_A 543 GYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA----KGRTTIIIAHRLSTIRN 618 (1321)
T ss_dssp TTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH----TTSEEEEECSCTTTTTT
T ss_pred CCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh----CCCEEEEEcccHHHHHh
Confidence 999999995 999999999999999999999999999999999999999999999884 46999999999999999
Q ss_pred cCeEEEeeCCeEEEeccchhhhhcCchhHHHHhhhc
Q 005467 656 VDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 656 aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 691 (695)
||+|+||++|+|+|+|||+||++++|.|+++|+.|.
T Consensus 619 aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 619 ADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQT 654 (1321)
T ss_dssp CSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHHH
T ss_pred CCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhhh
Confidence 999999999999999999999999999999999884
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-102 Score=961.39 Aligned_cols=568 Identities=30% Similarity=0.410 Sum_probs=463.8
Q ss_pred HHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEE---EeecchhhhHHHHhhhcccccccceec
Q 005467 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMV---FHKSSRFLVLLCVTSGIFSGLRSGCFS 196 (695)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~---~~~~~~~l~~~~i~~~i~~~l~~~~~~ 196 (695)
+.+++.+.+++++.+++++++.++..+.....+.++...+......+... ...+..++++++++.+++.+++.+++.
T Consensus 740 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~ 819 (1321)
T 4f4c_A 740 LFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMG 819 (1321)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777766555554444444333333444444443221111000 001122233445566677788888899
Q ss_pred hhhhHHHHHHHHHHHHhhhccccccccc--cccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccch
Q 005467 197 IANIVLVKRLRETLYSALLFQDVYFFDT--EAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLT 274 (695)
Q Consensus 197 ~~~~~~~~~lr~~lf~~ll~~~~~ff~~--~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~ 274 (695)
.++.++..++|.++|++++++|++||+. +++|++++|+++|++.+++.+...+..++..++.+++.++++++++|+++
T Consensus 820 ~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~ 899 (1321)
T 4f4c_A 820 IASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMA 899 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHH
Confidence 9999999999999999999999999986 67999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcccc
Q 005467 275 LSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAY 354 (695)
Q Consensus 275 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (695)
+++++++|++++...++.++.++...+..+..++....+.|+++|+++||+||.|+.+.++|.+..++..+...+.....
T Consensus 900 lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 979 (1321)
T 4f4c_A 900 LLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQ 979 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888877777766666677777888899999999999999999999999999999988888776655444
Q ss_pred ccceeehhhhhhhheehheeecceeeeccccChhhhhh--hhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCC
Q 005467 355 GLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTK--YVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (695)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~--~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~ 432 (695)
+........+..+..++++++|+.++..|..+.+.+.. +..+......++..+...+..+.++..+.+|++++++.++
T Consensus 980 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 1059 (1321)
T 4f4c_A 980 GLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKIS 1059 (1321)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 44433334444445566778888888888877665433 3334444456666677778889999999999999999887
Q ss_pred cccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 433 SNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 433 ~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
+.++.+.....++..|+|+|+||+|+||++++.+||+||||+|+|||++|||||||||||||+++|+|||+|++|+|+||
T Consensus 1060 ~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iD 1139 (1321)
T 4f4c_A 1060 KIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFID 1139 (1321)
T ss_dssp SSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEET
T ss_pred cCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEEC
Confidence 75543333334456789999999999998766789999999999999999999999999999999999999999999999
Q ss_pred CccCCcchhHHHHhhhccccCCceeeeeeccccccccC-CcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccC
Q 005467 513 GFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGC-PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 589 (695)
Q Consensus 513 G~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~-~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LS 589 (695)
|+|+++++.++||++|++|||||+||+|||||||+||. +++++|||+++||+.|+++|||++||+||||.|||+ +||
T Consensus 1140 G~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LS 1219 (1321)
T 4f4c_A 1140 GSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLS 1219 (1321)
T ss_dssp TEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSC
T ss_pred CEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccC
Confidence 99999999999999999999999999999999999994 357899999999999999999999999999999995 999
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 669 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive 669 (695)
|||||||||||||+|||+||||||||||||++||+.|+++|++.+ +|||+|+|||||+|+++||||+|||+|+|+|
T Consensus 1220 gGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~----~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE 1295 (1321)
T 4f4c_A 1220 GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR----EGRTCIVIAHRLNTVMNADCIAVVSNGTIIE 1295 (1321)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS----SSSEEEEECSSSSTTTTCSEEEEESSSSEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc----CCCEEEEeccCHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999884 5699999999999999999999999999999
Q ss_pred eccchhhhhcCchhHHHHhhhc
Q 005467 670 VGNHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 670 ~Gth~eLl~~~g~Y~~l~~~q~ 691 (695)
+|+|+||++++|.|++||+.|.
T Consensus 1296 ~Gth~eLl~~~g~y~~L~~~Q~ 1317 (1321)
T 4f4c_A 1296 KGTHTQLMSEKGAYYKLTQKQM 1317 (1321)
T ss_dssp EECHHHHHHCC-----------
T ss_pred ECCHHHHHhCCcHHHHHHHHHH
Confidence 9999999999999999999985
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-98 Score=863.16 Aligned_cols=566 Identities=24% Similarity=0.372 Sum_probs=497.2
Q ss_pred HHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhccccc-ceEEEeecchhhhHHHHhhhcccccccceechhh
Q 005467 121 SRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCFSIAN 199 (695)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~~~~~ 199 (695)
+++++|++++++.+++++++.++..+..++.|++++..++..... +...+.....+++++.++..++.+++.++..+.+
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (587)
T 3qf4_A 12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYAS 91 (587)
T ss_dssp CCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999888888888999999999999999988754322 1111111112223334445566677778888899
Q ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchhhHHH
Q 005467 200 IVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALL 279 (695)
Q Consensus 200 ~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~li~l~ 279 (695)
.++..++|.++|+|++++|+.||+++++|++++|+++|++.+++++...+..++..++.+++++++++.++|++++++++
T Consensus 92 ~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~ 171 (587)
T 3qf4_A 92 QNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIF 171 (587)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888888888889999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcccccccee
Q 005467 280 ICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYGLWNM 359 (695)
Q Consensus 280 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (695)
++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+..........
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (587)
T 3qf4_A 172 LIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALP 251 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888888888888889999999999999999999999999999999999999888877766554444444
Q ss_pred ehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccccc
Q 005467 360 SFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSE 439 (695)
Q Consensus 360 ~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~ 439 (695)
...++..+..++++++|++++..|.+++|.++++..|...+..|+..++..+..+.++..+++|++++++.+++..+.+.
T Consensus 252 ~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~ 331 (587)
T 3qf4_A 252 LFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADN 331 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 44444455566778899999999999999999999999999999988998899999999999999999998775433222
Q ss_pred ccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc
Q 005467 440 GVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (695)
Q Consensus 440 ~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i 519 (695)
....++..+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|++++
T Consensus 332 ~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~ 410 (587)
T 3qf4_A 332 ALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV 410 (587)
T ss_dssp CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGB
T ss_pred ccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccC
Confidence 22223345789999999999753 35799999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHH
Q 005467 520 DIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIA 597 (695)
Q Consensus 520 ~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIa 597 (695)
+.+++|++|||||||+++|++||+|||.+|. ++.++++++++++.++++++++++|+||||.+||+ +||||||||+|
T Consensus 411 ~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~ 489 (587)
T 3qf4_A 411 KLKDLRGHISAVPQETVLFSGTIKENLKWGR-EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLS 489 (587)
T ss_dssp CHHHHHHHEEEECSSCCCCSEEHHHHHTTTC-SSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHH
T ss_pred CHHHHHhheEEECCCCcCcCccHHHHHhccC-CCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHH
Confidence 9999999999999999999999999999994 67889999999999999999999999999999995 99999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||+++||+|||||||||+||+++|+.|++.|++.. +|+|+|+||||+++++.||||+||++|+|+|+|+|+||+
T Consensus 490 lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~ 565 (587)
T 3qf4_A 490 IARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT----KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELL 565 (587)
T ss_dssp HHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS----TTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC----CCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999873 469999999999999999999999999999999999999
Q ss_pred hcCchhHHHHhhhcc
Q 005467 678 HKGRLYAKLVKRQTE 692 (695)
Q Consensus 678 ~~~g~Y~~l~~~q~~ 692 (695)
++++.|+++|+.|..
T Consensus 566 ~~~~~~~~~~~~~~~ 580 (587)
T 3qf4_A 566 EHCKPYREIYESQFG 580 (587)
T ss_dssp HHCHHHHHHHHHHC-
T ss_pred hCCcHHHHHHHHHhc
Confidence 999999999998853
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-98 Score=862.66 Aligned_cols=569 Identities=27% Similarity=0.442 Sum_probs=505.0
Q ss_pred HHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhccccc-ceEEEeecchhhhHHHHhhhccccccccee
Q 005467 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (695)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~ 195 (695)
+..++++++|++++++.++.++++.++..+..++.|++++..++..... +...+.....++.++.++.+++.+++.++.
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIM 101 (598)
T ss_dssp HHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999988888889999999999999999888754322 111011111222334455566777888888
Q ss_pred chhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchh
Q 005467 196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 275 (695)
Q Consensus 196 ~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~l 275 (695)
...+.++..++|.++|+|++++|+.||+++++|++++|+++|++.+++++...+..++..++.++++++++++++|++++
T Consensus 102 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 181 (598)
T 3qf4_B 102 LTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSL 181 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccc
Q 005467 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355 (695)
Q Consensus 276 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (695)
++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+.....+
T Consensus 182 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (598)
T 3qf4_B 182 VTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSG 261 (598)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888899999999999999999999999999999999999999998888777666555
Q ss_pred cceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccc
Q 005467 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435 (695)
Q Consensus 356 ~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~ 435 (695)
.......++..+..++++++|++++..|.+++|.+++++.|...+..|+..++..+..+.++..+++|++++++.+++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 341 (598)
T 3qf4_B 262 VLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD 341 (598)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 55544555555556677889999999999999999999999999999999999999999999999999999999877543
Q ss_pred ccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc
Q 005467 436 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (695)
Q Consensus 436 ~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d 515 (695)
. +.....++..++|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|
T Consensus 342 ~-~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 418 (598)
T 3qf4_B 342 D-PDAVELREVRGEIEFKNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418 (598)
T ss_dssp C-SSCCCCCSCCCCEEEEEEECCSSSS--SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEE
T ss_pred C-CCCCCCCCCCCeEEEEEEEEECCCC--CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEE
Confidence 2 1222223445789999999999743 479999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccc
Q 005467 516 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 593 (695)
Q Consensus 516 i~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQk 593 (695)
+++++.+++|++||||+||+++|++||+|||.+| .++.++++++++++.++++++++++|+||||.+||+ +||||||
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYG-NPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSS-STTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred hhhCCHHHHHhceEEEeCCCccccccHHHHHhcC-CCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 9999999999999999999999999999999999 467889999999999999999999999999999995 9999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth 673 (695)
||||||||++++|+|||||||||+||+++|+.|++.|.+.. +|+|+|+||||+++++.||+|++|++|+|+|+|+|
T Consensus 498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~ 573 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM----EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKH 573 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH----TTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999874 36999999999999999999999999999999999
Q ss_pred hhhhhcCchhHHHHhhhccc
Q 005467 674 AELLHKGRLYAKLVKRQTES 693 (695)
Q Consensus 674 ~eLl~~~g~Y~~l~~~q~~~ 693 (695)
+||++++|.|+++|..|...
T Consensus 574 ~~l~~~~~~~~~~~~~~~~~ 593 (598)
T 3qf4_B 574 DELIQKRGFYYELFTSQYGL 593 (598)
T ss_dssp HHHHHTTCHHHHHHHHHHGG
T ss_pred HHHHhCCCHHHHHHHHHhhh
Confidence 99999999999999988653
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-98 Score=859.53 Aligned_cols=566 Identities=29% Similarity=0.424 Sum_probs=497.9
Q ss_pred HHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccce----EEE----eecchhhhHHHHhhhcccccc
Q 005467 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEA----MVF----HKSSRFLVLLCVTSGIFSGLR 191 (695)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~----~~~----~~~~~~l~~~~i~~~i~~~l~ 191 (695)
++|+++|++++++.++.++++.++..+..++.|++++..++....... ..+ .....++.++.++.+++.+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999998888888888888888999998888875432111 000 000111122233445566777
Q ss_pred cceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhc
Q 005467 192 SGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW 271 (695)
Q Consensus 192 ~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw 271 (695)
.++..+++.++..++|.++|+|++++|++||+++++|++++|+++|++.+++++...+..++.+++.+++++++++.++|
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 161 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV 161 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 88888899999999999999999999999999999999999999999999999888888888888888899999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhc
Q 005467 272 PLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES 351 (695)
Q Consensus 272 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 351 (695)
++++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+..
T Consensus 162 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (578)
T 4a82_A 162 KLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241 (578)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888899999999999999999999999999999999999999999888877766
Q ss_pred cccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccC
Q 005467 352 MAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLL 431 (695)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~ 431 (695)
+..+........+..+..++++++|++++..|.+|+|.+++++.|...+..|+..++..+..+.++..+++|++++++.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~ 321 (578)
T 4a82_A 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55555554455555555667788999999999999999999999999999999999999999999999999999999987
Q ss_pred CcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE
Q 005467 432 PSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (695)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i 511 (695)
++..+.......++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 322 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 400 (578)
T 4a82_A 322 YDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400 (578)
T ss_dssp CSSCCCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEE
T ss_pred CcccCCCCccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEE
Confidence 7643322222223345789999999999853 357999999999999999999999999999999999999999999999
Q ss_pred cCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccC
Q 005467 512 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLS 589 (695)
Q Consensus 512 dG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LS 589 (695)
||+|+++++.+++|++||||+||+++|++||+|||.+|. ++.++++++++++.++++++++++|+||||.+||+ +||
T Consensus 401 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LS 479 (578)
T 4a82_A 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR-PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479 (578)
T ss_dssp TTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGC-SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSC
T ss_pred CCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCC
Confidence 999999999999999999999999999999999999994 67889999999999999999999999999999995 899
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEE
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIE 669 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive 669 (695)
||||||++||||+++||+|||||||||+||+++|+.|++.+++.. +++|+|+||||+++++.||+|++|++|+|+|
T Consensus 480 gGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 555 (578)
T 4a82_A 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS----KDRTTLIVAHRLSTITHADKIVVIENGHIVE 555 (578)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSSGGGTTTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998874 4589999999999999999999999999999
Q ss_pred eccchhhhhcCchhHHHHhhhc
Q 005467 670 VGNHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 670 ~Gth~eLl~~~g~Y~~l~~~q~ 691 (695)
+|+|+||++++|.|+++|+.|.
T Consensus 556 ~g~~~el~~~~~~~~~~~~~q~ 577 (578)
T 4a82_A 556 TGTHRELIAKQGAYEHLYSIQN 577 (578)
T ss_dssp EECHHHHHHTTSHHHHHHTTTT
T ss_pred ECCHHHHHhCCcHHHHHHHhhc
Confidence 9999999999999999998874
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-95 Score=838.92 Aligned_cols=568 Identities=30% Similarity=0.462 Sum_probs=497.5
Q ss_pred HHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEEEeecc-hhhhHHHHhhhccccccccee
Q 005467 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSS-RFLVLLCVTSGIFSGLRSGCF 195 (695)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~~~~~~-~~l~~~~i~~~i~~~l~~~~~ 195 (695)
++.+++++++++++++.++.++++.++..+..++.|++++..++.............. ..++++.++.+++.+++.++.
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b5x_A 10 WQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCL 89 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999988888888888888888889999888888654321110000000 112223344556677777888
Q ss_pred chhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchh
Q 005467 196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 275 (695)
Q Consensus 196 ~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~l 275 (695)
...+.++..++|.++|+|++++|+.||++.++|++++|+++|++.+++++...+..++..++.++++++++++++|++++
T Consensus 90 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 169 (582)
T 3b5x_A 90 SWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSL 169 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88899999999999999999999999999999999999999999999998888888999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccc
Q 005467 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355 (695)
Q Consensus 276 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (695)
++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+..+...
T Consensus 170 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T 3b5x_A 170 VLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQS 249 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888899999999999999999999999999999999999999888887666555
Q ss_pred cceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccc
Q 005467 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435 (695)
Q Consensus 356 ~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~ 435 (695)
.......++..+..++++++|++++..|.+|+|++++++.|...+..|+..++..+..+.++..+++|++++++.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b5x_A 250 IADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 55555555555556667888999999999999999999999999999999999999999999999999999998776532
Q ss_pred ccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc
Q 005467 436 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (695)
Q Consensus 436 ~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d 515 (695)
+ ...+.++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|
T Consensus 330 ~--~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b5x_A 330 N--GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406 (582)
T ss_pred C--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 1 111122234679999999999753 2479999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccc
Q 005467 516 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 593 (695)
Q Consensus 516 i~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQk 593 (695)
+++++.+++|++||||||++++|++||+|||.+|..++.++++++++++.++++++++++|+||||.+||+ +||||||
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~ 486 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHH
Confidence 99999999999999999999999999999999994246788999999999999999999999999999995 9999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth 673 (695)
||++||||+++||+|||||||||+||+++|+.|++.|++.. +|+|+|+||||+++++.||+|++|++|+|+|.|+|
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ----KNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRH 562 (582)
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999873 36999999999999999999999999999999999
Q ss_pred hhhhhcCchhHHHHhhhc
Q 005467 674 AELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 674 ~eLl~~~g~Y~~l~~~q~ 691 (695)
+||+++++.|+++|+.|.
T Consensus 563 ~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b5x_A 563 ADLLAQDGAYAQLHRIQF 580 (582)
T ss_pred HHHHhCCcHHHHHHHHhh
Confidence 999999999999999885
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-95 Score=838.42 Aligned_cols=569 Identities=31% Similarity=0.468 Sum_probs=498.3
Q ss_pred HHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhccccc-ceEEEeecchhhhHHHHhhhccccccccee
Q 005467 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQRE-EAMVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (695)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~ 195 (695)
++.+++++++++++++.++.++++.++..+..++.|++++..++..... +..........++++.++.+++.+++.+..
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b60_A 10 WQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCI 89 (582)
T ss_dssp CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999988888888888888888888999888888754321 110000001112233444566677778888
Q ss_pred chhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchh
Q 005467 196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 275 (695)
Q Consensus 196 ~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~l 275 (695)
..++.++..++|.++|+|++++|+.||++.++|++++|+++|++.+++++...+..++..++.+++.++++++++|++++
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 169 (582)
T 3b60_A 90 SWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI 169 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88899999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccc
Q 005467 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355 (695)
Q Consensus 276 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (695)
++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+..+...
T Consensus 170 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T 3b60_A 170 ILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 249 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888899999999999999999999999999999999999999888877666555
Q ss_pred cceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccc
Q 005467 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQ 435 (695)
Q Consensus 356 ~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~ 435 (695)
.......++..+..++++++|++++..|.+|+|.+++++.|...+..|+..++..+..+.++..+++|+.++++.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b60_A 250 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD 329 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 55555555555556677888999999999999999999999999999999999999999999999999999998876532
Q ss_pred ccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc
Q 005467 436 FLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (695)
Q Consensus 436 ~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d 515 (695)
+ .....++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|
T Consensus 330 ~--~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~ 406 (582)
T 3b60_A 330 E--GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 406 (582)
T ss_dssp C--CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE
T ss_pred C--CCCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEE
Confidence 2 111122234679999999999743 2479999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccc
Q 005467 516 LTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQK 593 (695)
Q Consensus 516 i~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQk 593 (695)
+++++.+++|++||||||++.+|++||+|||.+|..++.++++++++++.++++++++++|+||||.+||+ +||||||
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~ 486 (582)
T 3b60_A 407 LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR 486 (582)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHH
T ss_pred ccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHH
Confidence 99999999999999999999999999999999984246788999999999999999999999999999985 9999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth 673 (695)
||++||||+++||+|||||||||+||+++|+.|++.|++.. +|+|+|+||||+++++.||+|++|++|+|+|.|+|
T Consensus 487 qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ----KNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTH 562 (582)
T ss_dssp HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH----TTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh----CCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999874 36899999999999999999999999999999999
Q ss_pred hhhhhcCchhHHHHhhhcc
Q 005467 674 AELLHKGRLYAKLVKRQTE 692 (695)
Q Consensus 674 ~eLl~~~g~Y~~l~~~q~~ 692 (695)
+||+++++.|+++|+.|.+
T Consensus 563 ~~l~~~~~~~~~~~~~q~~ 581 (582)
T 3b60_A 563 SELLAQHGVYAQLHKMQFG 581 (582)
T ss_dssp HHHHHHTSSHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHhcc
Confidence 9999999999999998853
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-94 Score=888.36 Aligned_cols=568 Identities=35% Similarity=0.513 Sum_probs=491.1
Q ss_pred HHHHHHHHhcc-ceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccc--------e-------------EEEeecchh
Q 005467 119 ALSRMWNLIGR-DKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREE--------A-------------MVFHKSSRF 176 (695)
Q Consensus 119 ~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~--------~-------------~~~~~~~~~ 176 (695)
.++++++|..+ +++.+++++++.++..++..+.|++++..++...... . ........+
T Consensus 34 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (1284)
T 3g5u_A 34 SVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYY 113 (1284)
T ss_dssp TTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHH
Confidence 35677788754 4555556666666666666666776666554321000 0 000011222
Q ss_pred hhHHHHhhhcccccccceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHh
Q 005467 177 LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNS 256 (695)
Q Consensus 177 l~~~~i~~~i~~~l~~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~ 256 (695)
++.+.++..++.+++.+++..++.++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+..++..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~ 193 (1284)
T 3g5u_A 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAM 193 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556667788888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhhHHHHhhccchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhH
Q 005467 257 LQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRY 336 (695)
Q Consensus 257 ~~~v~~~i~l~~~sw~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~ 336 (695)
+.+++.++++++++|++++++++++|+++++..++.+..++..++.++..++.++.+.|+++|+++||+||.|+.+.++|
T Consensus 194 ~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~ 273 (1284)
T 3g5u_A 194 ATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERY 273 (1284)
T ss_dssp HHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHH
Confidence 99999999999999999999999999999999999899999988899999999999999999999999999999999999
Q ss_pred HHHHHHhhcchhhhccccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHH
Q 005467 337 KIWLEKLAFIRIRESMAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQ 416 (695)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 416 (695)
.+..++..+...+.....+.......++..+..++++|+|++++..|.+++|+++++..+......|+..+...+..+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (1284)
T 3g5u_A 274 NNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFAN 353 (1284)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888876665555555555555566677889999999999999999998777776777777777788888999
Q ss_pred hhcchhhHHHhhccCCcccccc-cccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHH
Q 005467 417 SIGATEKVFQLIDLLPSNQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFV 495 (695)
Q Consensus 417 ~~~a~~rl~~~l~~~~~~~~~~-~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl 495 (695)
+..+++|++++++.+|+.+..+ .+..+++..|+|+|+||+|+|+++++.++|+||||+|+|||++|||||||||||||+
T Consensus 354 ~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~ 433 (1284)
T 3g5u_A 354 ARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTV 433 (1284)
T ss_dssp HHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHH
Confidence 9999999999999877643311 222233456789999999999875556799999999999999999999999999999
Q ss_pred HHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcC
Q 005467 496 NLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSL 575 (695)
Q Consensus 496 ~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~L 575 (695)
++|+|+|+|++|+|++||+|+++++.+++|++||||+|||+||++||+|||.+|. ++++++++++|++.++++++|+++
T Consensus 434 ~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~-~~~~~~~~~~~~~~~~~~~~i~~l 512 (1284)
T 3g5u_A 434 QLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGR-EDVTMDEIEKAVKEANAYDFIMKL 512 (1284)
T ss_dssp HHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHC-SSCCHHHHHHHHHHTTCHHHHHHS
T ss_pred HHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999994 678999999999999999999999
Q ss_pred CCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc
Q 005467 576 PCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 653 (695)
Q Consensus 576 P~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti 653 (695)
|+||||.+||+ +||||||||||||||+++||+|||||||||+||+++|+.|++++++.. +|+|+|+||||++++
T Consensus 513 ~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~l~~i 588 (1284)
T 3g5u_A 513 PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR----EGRTTIVIAHRLSTV 588 (1284)
T ss_dssp TTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH----TTSEEEEECSCHHHH
T ss_pred cccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc----CCCEEEEEecCHHHH
Confidence 99999999995 999999999999999999999999999999999999999999998874 469999999999999
Q ss_pred cccCeEEEeeCCeEEEeccchhhhhcCchhHHHHhhhc
Q 005467 654 KAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 654 ~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 691 (695)
++||+|+||++|+|+|+|+|+||++++|.|++++..|.
T Consensus 589 ~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 589 RNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626 (1284)
T ss_dssp TTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHhh
Confidence 99999999999999999999999999999999998774
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-87 Score=833.24 Aligned_cols=569 Identities=32% Similarity=0.452 Sum_probs=483.3
Q ss_pred HHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccce-----EEEeecchhhhHHHHhhhcccccccce
Q 005467 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEA-----MVFHKSSRFLVLLCVTSGIFSGLRSGC 194 (695)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~-----~~~~~~~~~l~~~~i~~~i~~~l~~~~ 194 (695)
+++++++.+++++.+++++++.++..+.....|+++...++.....+. ........+++++.++..++.+++.++
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 772 (1284)
T 3g5u_A 693 FWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFT 772 (1284)
T ss_dssp TTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888898888877777777776666666666655532211100 000011122333444555666778888
Q ss_pred echhhhHHHHHHHHHHHHhhhcccccccc--ccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhcc
Q 005467 195 FSIANIVLVKRLRETLYSALLFQDVYFFD--TEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWP 272 (695)
Q Consensus 195 ~~~~~~~~~~~lr~~lf~~ll~~~~~ff~--~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~ 272 (695)
+...+.++..++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|+
T Consensus 773 ~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~ 852 (1284)
T 3g5u_A 773 FGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQ 852 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88999999999999999999999999999 4789999999999999999999999999999998888889999999999
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhcc
Q 005467 273 LTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESM 352 (695)
Q Consensus 273 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 352 (695)
+++++++++|++++...+..++.++...+.++..+.....+.|+++|+++||+|+.|+.+.++|.+..+...+...+...
T Consensus 853 l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~ 932 (1284)
T 3g5u_A 853 LTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAH 932 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888777777777777777788888899999999999999999999999999998888777766555
Q ss_pred ccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCC
Q 005467 353 AYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLP 432 (695)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~ 432 (695)
..+........+..+..++++++|++++..|.++.|.++.+..+......++..+...+..+.++..+++|++++++.+|
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 1012 (1284)
T 3g5u_A 933 VFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTP 1012 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 55544444444555556778889999999999999999988877777666777777777788888999999999999877
Q ss_pred cccccc-cccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE
Q 005467 433 SNQFLS-EGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (695)
Q Consensus 433 ~~~~~~-~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i 511 (695)
+....+ .+..+.+..+.|+|+||+|+|+++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 1013 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i 1092 (1284)
T 3g5u_A 1013 EIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092 (1284)
T ss_dssp SSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEES
T ss_pred cccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 643221 1122233467899999999998654457999999999999999999999999999999999999999999999
Q ss_pred cCccCCcchhHHHHhhhccccCCceeeeeeccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--cc
Q 005467 512 DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LL 588 (695)
Q Consensus 512 dG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~L 588 (695)
||+|+++++.+++|++|||||||+.+|++||+|||.+|.+ ...++++++++++.++++++++++|+||||.+||+ +|
T Consensus 1093 ~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~L 1172 (1284)
T 3g5u_A 1093 DGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQL 1172 (1284)
T ss_dssp SSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSS
T ss_pred CCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCcc
Confidence 9999999999999999999999999999999999999943 24788999999999999999999999999999995 89
Q ss_pred CCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEE
Q 005467 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 668 (695)
Q Consensus 589 SGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Iv 668 (695)
||||||||||||||+++|+|||||||||+||+++|+.|+++|++. .+|+|+|+||||+++++.||||+||++|+|+
T Consensus 1173 SgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~----~~~~tvi~isH~l~~i~~~dri~vl~~G~i~ 1248 (1284)
T 3g5u_A 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA----REGRTCIVIAHRLSTIQNADLIVVIQNGKVK 1248 (1284)
T ss_dssp CHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH----SSSSCEEEECSCTTGGGSCSEEEEEETBEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh----CCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999886 3469999999999999999999999999999
Q ss_pred EeccchhhhhcCchhHHHHhhhcc
Q 005467 669 EVGNHAELLHKGRLYAKLVKRQTE 692 (695)
Q Consensus 669 e~Gth~eLl~~~g~Y~~l~~~q~~ 692 (695)
|.|+|+||++++|.|++||+.|..
T Consensus 1249 ~~g~~~~l~~~~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A 1249 EHGTHQQLLAQKGIYFSMVSVQAG 1272 (1284)
T ss_dssp EEECHHHHHHSCSHHHHHHHHHC-
T ss_pred EECCHHHHHhCCCHHHHHHHHHhh
Confidence 999999999999999999998863
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-71 Score=584.17 Aligned_cols=275 Identities=40% Similarity=0.599 Sum_probs=248.5
Q ss_pred hhHHHHhhcchhhHHHhhccCCcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCC
Q 005467 411 LSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSG 490 (695)
Q Consensus 411 ~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSG 490 (695)
+..++++.++++|++++++.+++..+.+.........+.|+|+||+|+|++. .++|+||||+|++||++|||||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~--~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG--RETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTT--CEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCC--CceeeeeeEEEcCCCEEEEECCCCch
Confidence 3466778899999999998776543222222222345689999999999743 47999999999999999999999999
Q ss_pred hhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhH
Q 005467 491 KSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE 570 (695)
Q Consensus 491 KSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~ 570 (695)
||||+++|+|+|+|++|+|++||+|+.+++..++|++||||+|+++||++||+|||.||. +..++++++++++.+++++
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~-~~~~~~~~~~~~~~~~l~~ 171 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGR-VTAGNDEVEAAAQAAGIHD 171 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTS-TTCCHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhc-ccCCHHHHHHHHHHhCcHH
Confidence 999999999999999999999999999999999999999999999999999999999994 5788999999999999999
Q ss_pred hHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEee
Q 005467 571 FILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAH 648 (695)
Q Consensus 571 fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaH 648 (695)
++..+|+||+|.+|+. +|||||||||||||||+++|+|||||||||+||+++++.|++.|.++. +++|+|+|||
T Consensus 172 ~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~----~~~Tvi~itH 247 (306)
T 3nh6_A 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC----ANRTTIVVAH 247 (306)
T ss_dssp HHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH----TTSEEEEECC
T ss_pred HHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc----CCCEEEEEEc
Confidence 9999999999999985 899999999999999999999999999999999999999999999884 3589999999
Q ss_pred ecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHHhhhcc
Q 005467 649 RLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQTE 692 (695)
Q Consensus 649 rlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~ 692 (695)
|+++++.||+|+||++|+|++.|+|+||++++|.|+++|+.|..
T Consensus 248 ~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 248 RLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQG 291 (306)
T ss_dssp SHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHHC
T ss_pred ChHHHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998853
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-58 Score=477.33 Aligned_cols=238 Identities=47% Similarity=0.732 Sum_probs=221.6
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
.+|+++||+|+|++. ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 369999999999531 2469999999999999999999999999999999999999999999999999998888889999
Q ss_pred hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~ 605 (695)
||||+|++.+|++|++|||.++. +..+++++.++++.+++.++++.+|+|+++.+++. +||||||||++|||||+++
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLAN-PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTC-TTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999984 45667889999999999999999999999999984 8999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc-CchhH
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYA 684 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~-~g~Y~ 684 (695)
|++||||||||+||+++++.|.+.|.++. +|+|+|+|||+++.++.||+|++|++|++++.|+++|+++. .+.|+
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~----~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~ 239 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKIC----KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 239 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHH----TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHc----CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHH
Confidence 99999999999999999999999999873 36899999999999988999999999999999999999988 89999
Q ss_pred HHHhhhc
Q 005467 685 KLVKRQT 691 (695)
Q Consensus 685 ~l~~~q~ 691 (695)
+++..|.
T Consensus 240 ~l~~~~~ 246 (247)
T 2ff7_A 240 YLYQLQS 246 (247)
T ss_dssp HHHHHHC
T ss_pred HHHHhhc
Confidence 9998763
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-57 Score=473.52 Aligned_cols=239 Identities=39% Similarity=0.663 Sum_probs=221.1
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
+.|+++||+|+|++...+++|+||||+|++||++||+||||||||||+++|+|+++| +|+|.+||+++.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999753224699999999999999999999999999999999999987 8999999999998888889999
Q ss_pred hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~ 605 (695)
||||+|++.+|+.|++|||.++. ...+++++.++++.+++.+++..+|+|++|.+++. +||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 173 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGK-LDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD 173 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTC-TTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCcccccCHHHHHhccC-CCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999984 34567788899999999999999999999999974 8999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHH
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 685 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~ 685 (695)
|++||||||||+||+++++.+.+.|.++. +++|+|+|||+++.++.||+|++|++|+|++.|+++++++..+.|.+
T Consensus 174 p~lllLDEPts~LD~~~~~~i~~~l~~l~----~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 249 (260)
T 2ghi_A 174 PKIVIFDEATSSLDSKTEYLFQKAVEDLR----KNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAE 249 (260)
T ss_dssp CSEEEEECCCCTTCHHHHHHHHHHHHHHT----TTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhc----CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHH
Confidence 99999999999999999999999999873 35899999999999988999999999999999999999998999999
Q ss_pred HHhhhcc
Q 005467 686 LVKRQTE 692 (695)
Q Consensus 686 l~~~q~~ 692 (695)
+|..|.+
T Consensus 250 ~~~~~~~ 256 (260)
T 2ghi_A 250 MWNMQSG 256 (260)
T ss_dssp HHHHHHC
T ss_pred HHHhhhh
Confidence 9987743
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-58 Score=471.46 Aligned_cols=236 Identities=42% Similarity=0.672 Sum_probs=219.5
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+|+|+++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++||
T Consensus 2 l~~~~l~~~y~~~--~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCCC--CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 7899999999532 46999999999999999999999999999999999999999999999999998888778899999
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCCc
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ 607 (695)
||+|++.+|++|++|||.++..+..+++++.++++.+++.++++.+|.|++|.+++. +||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999972235567889999999999999999999999999984 999999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHH
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
+||||||||+||+++++.+.+.|.++. +|+|+|+|||+++.++.||+|++|++|++++.|+++++++..+.|+++|
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~----~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 235 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLM----KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHH----TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhc----CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHH
Confidence 999999999999999999999999874 3689999999999988899999999999999999999999888999999
Q ss_pred hhhc
Q 005467 688 KRQT 691 (695)
Q Consensus 688 ~~q~ 691 (695)
..|.
T Consensus 236 ~~~~ 239 (243)
T 1mv5_A 236 SEQL 239 (243)
T ss_dssp HCCC
T ss_pred Hhhh
Confidence 8764
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-57 Score=472.54 Aligned_cols=242 Identities=38% Similarity=0.667 Sum_probs=220.1
Q ss_pred cceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHh
Q 005467 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~ 526 (695)
.+.|+++||+|+|++..+.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||.++.+++...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 34699999999997521246999999999999999999999999999999999999999999999999998888888899
Q ss_pred hhccccCCceeeeeeccccccccCCcCCCc-hhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhh
Q 005467 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKN-EDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAIL 603 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~-eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll 603 (695)
+||||+|++.+|+.|++|||.++. ....+ +++.++++.++++++++.+|+|+++.+++. +||||||||++|||||+
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTC-SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred cEEEEecCCccccccHHHHHhhhc-ccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999984 34444 677888899999999999999999999874 89999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchh
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLY 683 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y 683 (695)
++|++||||||||+||+++++.+.+.|.++.+ ..|+|+|+|||+++.+..||+|++|++|+|++.|+++++++..+.|
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~ 250 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPE--WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCY 250 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTT--TTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHh--hcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHH
Confidence 99999999999999999999999999988743 1368999999999999889999999999999999999999999999
Q ss_pred HHHHhhhc
Q 005467 684 AKLVKRQT 691 (695)
Q Consensus 684 ~~l~~~q~ 691 (695)
.+++..|.
T Consensus 251 ~~~~~~~~ 258 (271)
T 2ixe_A 251 RSMVEALA 258 (271)
T ss_dssp HHHHHC--
T ss_pred HHHHHHhh
Confidence 99998774
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-54 Score=439.12 Aligned_cols=227 Identities=27% Similarity=0.488 Sum_probs=204.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 48999999999642 24799999999999999999999999999999999999999999999999 39
Q ss_pred ccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCC
Q 005467 529 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 529 ~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p 606 (695)
|||+|++.+|+.|++|||.++. ...+++..++++.+++.+.+..+|.|++|.+++. +||||||||++|||||+++|
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGC--QLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTS--CCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCcCCCcCHHHHhhCcc--ccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999983 2345567778888888888989999999999874 99999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHH
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKL 686 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l 686 (695)
++||||||||+||+++++.+.+.|.+..+- .+++|+|+|||+++.++.||+|++|++|++++.|+++|+++..+.|.++
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~-~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 225 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGM-LKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEF 225 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTST-TTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHhh-cCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHH
Confidence 999999999999999999999888521110 2468999999999999889999999999999999999999999999999
Q ss_pred Hhhhcc
Q 005467 687 VKRQTE 692 (695)
Q Consensus 687 ~~~q~~ 692 (695)
+..|..
T Consensus 226 ~~~~~~ 231 (237)
T 2cbz_A 226 LRTYAS 231 (237)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 988864
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-54 Score=466.48 Aligned_cols=226 Identities=25% Similarity=0.430 Sum_probs=211.0
Q ss_pred ccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH
Q 005467 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR 525 (695)
..+.|+++||+|+|++. +.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|++||+|+.+++...+|
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 34679999999999642 2579999999999999999999999999999999999998 899999999999999999999
Q ss_pred hhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhh
Q 005467 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAIL 603 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll 603 (695)
+.||||+|++.+|++|++|||.+.. ...+++++++++.+++.++++..|.+|+|.+++. +||||||||+||||||+
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCcccCccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998652 4567899999999999999999999999999985 79999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
++|++|+||||||+||++++..+++.|++.. .++|+|+|||+++.+..||||+||++|+|++.|+++|++++
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~----~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~ 243 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAF----ADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY 243 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTTT----TTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHC
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHh----CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999998763 46899999999999999999999999999999999999986
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-53 Score=431.49 Aligned_cols=220 Identities=25% Similarity=0.434 Sum_probs=196.7
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
+.|+++||+|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 369999999999642 24799999999999999999999999999999999999999999999998 4
Q ss_pred hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~ 605 (695)
|+||+|++.+|++|++|||.++. ...+.+..++++.+++.++++.+|.+++|.+++. +||||||||++|||||+++
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~ 148 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 148 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTS--CCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEecCCcccCCCHHHHhhccC--CcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999983 2334456677888899999999999999999974 9999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHH-HhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhH
Q 005467 606 PAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYA 684 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L-~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~ 684 (695)
|++||||||||+||+++++.+.+.+ .+. .+++|+|+|||+++.++.||+|++|++|++++.|+++++.++.+.|.
T Consensus 149 p~lllLDEPts~LD~~~~~~i~~~l~~~~----~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 224 (229)
T 2pze_A 149 ADLYLLDSPFGYLDVLTEKEIFESCVCKL----MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 224 (229)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHCCCCC----TTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHH
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHh----hCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHH
Confidence 9999999999999999999998864 444 23689999999999988899999999999999999999998877887
Q ss_pred HHH
Q 005467 685 KLV 687 (695)
Q Consensus 685 ~l~ 687 (695)
+++
T Consensus 225 ~~~ 227 (229)
T 2pze_A 225 SKL 227 (229)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-52 Score=434.03 Aligned_cols=223 Identities=28% Similarity=0.473 Sum_probs=190.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC--CcchhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL--TDLDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di--~~i~~~~lR~ 526 (695)
-|+++||+|+|++. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+++ .+.+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 48999999999753 3599999999999999999999999999999999999999999999999999 4455677899
Q ss_pred hhccccCCc--eeeeeeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 527 KIGFVGQEP--QLLQMDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 527 ~I~~V~Qd~--~LF~~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
.||||+|++ .+|..|++|||.++.. ...+. +++.++++..++.++.+..| .+||||||||++||
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPT---------HCLSFGQKKRVAIA 155 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBG---------GGSCHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCc---------ccCCHHHHHHHHHH
Confidence 999999987 5888999999998731 11222 34556677776655444332 37999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+.+|++||||||||+||+.+.+.+.+.|.++.+. +|+|+|+|||+++.+.. ||+|++|++|+|++.|+++|+++
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~--~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE--LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH--HCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhh--CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999987521 26899999999999865 99999999999999999999987
Q ss_pred cCchhH
Q 005467 679 KGRLYA 684 (695)
Q Consensus 679 ~~g~Y~ 684 (695)
....+.
T Consensus 234 ~~~~~~ 239 (275)
T 3gfo_A 234 EKEVIR 239 (275)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 654443
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-52 Score=424.37 Aligned_cols=217 Identities=34% Similarity=0.486 Sum_probs=180.4
Q ss_pred EEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH----
Q 005467 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL---- 524 (695)
Q Consensus 450 I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l---- 524 (695)
|+++||+|+|+++. ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2369999999999999999999999999999999999999999999999999998887654
Q ss_pred HhhhccccCCceeeee-eccccccccCC----cCCC----chhHHHHHHHhhHhHhH-hcCCCCccccccccccCCccch
Q 005467 525 REKIGFVGQEPQLLQM-DIKSNIMYGCP----KDVK----NEDIEWAAKQAYVHEFI-LSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~~-TI~eNI~~g~~----~~~~----~eei~~A~~~a~l~~fI-~~LP~G~dT~vge~~LSGGQkQ 594 (695)
|+.||||+|++.+|.. |++||+.++.. ...+ .+++.++++.+++.+.. ...| ..|||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~LSgGq~Q 152 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP---------NQLSGGQQQ 152 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG---------GGSCHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCCh---------hhCCHHHHH
Confidence 4579999999999986 99999987521 0112 23344555555554322 2111 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccch
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHA 674 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~ 674 (695)
|++|||||+.+|++||||||||+||+.++..+.+.|.++.+ ..|+|+|+|||+++..+.||+|++|++|+|++.|+.+
T Consensus 153 Rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE--EDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--HHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--HcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChh
Confidence 99999999999999999999999999999999999998753 1368999999999988889999999999999999988
Q ss_pred hhh
Q 005467 675 ELL 677 (695)
Q Consensus 675 eLl 677 (695)
++.
T Consensus 231 ~~~ 233 (235)
T 3tif_A 231 GFD 233 (235)
T ss_dssp ---
T ss_pred hhc
Confidence 764
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=443.99 Aligned_cols=221 Identities=30% Similarity=0.468 Sum_probs=193.2
Q ss_pred ceEEEEEEeeecCCCC-ccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH---
Q 005467 448 GHVQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW--- 523 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~--- 523 (695)
.-|+++||+++|++.. ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+|+..++...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999997432 246999999999999999999999999999999999999999999999999999887655
Q ss_pred HHhhhccccCCceeeee-eccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 524 LREKIGFVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 524 lR~~I~~V~Qd~~LF~~-TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
+|+.||||+|++.+|.. ||+|||.++.. ...+ ++++.++++.+++.++.+..| .+||||||||++
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~---------~~LSGGqkQRVa 173 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP---------SNLSGGQKQRVA 173 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT---------TTSCHHHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHH
Confidence 47889999999999864 99999998621 1122 345677888888877666555 369999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eL 676 (695)
|||||+.+|++||||||||+||+.+.+.|.+.|+++.+ ..|+|+|+|||+++.+.. ||||+||++|+|++.|+++|+
T Consensus 174 IArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~--~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINR--RLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--HSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH--hCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999998853 237899999999999875 999999999999999999999
Q ss_pred hhc
Q 005467 677 LHK 679 (695)
Q Consensus 677 l~~ 679 (695)
+.+
T Consensus 252 ~~~ 254 (366)
T 3tui_C 252 FSH 254 (366)
T ss_dssp HSS
T ss_pred HhC
Confidence 875
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-51 Score=422.58 Aligned_cols=217 Identities=27% Similarity=0.419 Sum_probs=190.0
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+...+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5899999999964 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcee-eeeeccccccccCCc---CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 529 GFVGQEPQL-LQMDIKSNIMYGCPK---DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 529 ~~V~Qd~~L-F~~TI~eNI~~g~~~---~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
+||+|++.+ |+.|++||+.++... ...++++.++++..++.++.+..| .+||||||||++|||||+.
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~QRv~iAraL~~ 158 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDY---------RVLSGGEQQRVQLARVLAQ 158 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBG---------GGCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCc---------ccCCHHHHHHHHHHHHHhc
Confidence 999999987 678999999988421 122345666777776654433222 3699999999999999999
Q ss_pred ------CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 605 ------DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 605 ------~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
+|++||||||||+||+.+.+.+.+.|+++.+. .++|+|+|||+++.+. .||+|++|++|+|++.|+++|++
T Consensus 159 ~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~--~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 159 LWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ--EPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp TCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH--SSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred ccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc--CCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999999987532 3579999999999986 59999999999999999999998
Q ss_pred hc
Q 005467 678 HK 679 (695)
Q Consensus 678 ~~ 679 (695)
..
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 64
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-50 Score=413.56 Aligned_cols=219 Identities=21% Similarity=0.383 Sum_probs=182.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH-Hhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL-REK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l-R~~ 527 (695)
-|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+ |+.
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 3899999999964 469999999999999999999999999999999999999999999999999988776655 456
Q ss_pred hccccCCceeeee-eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhc
Q 005467 528 IGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 528 I~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~ 604 (695)
||||+|++.+|.+ |++||+.++.....+.++..+.++ +.++.++ |++...+. .+||||||||++|||||+.
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLE-----WIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHH-----HHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHH-----HHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999986 999999987312222333332222 2233322 23333332 3799999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhc
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+|++||||||||+||+++.+.+.+.|.++.+ +|+|+|+|||+++.+ +.||+|++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQ---EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999999999998743 368999999999876 45999999999999999999999764
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-50 Score=419.64 Aligned_cols=217 Identities=34% Similarity=0.496 Sum_probs=187.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC--cchhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~--~i~~~~lR~ 526 (695)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999963 36999999999999999999999999999999999999999999999999985 334556788
Q ss_pred hhccccCCceeeee-eccccccccC--CcCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 527 KIGFVGQEPQLLQM-DIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 527 ~I~~V~Qd~~LF~~-TI~eNI~~g~--~~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
+||||+|++.+|.. |++|||.++. ....+ ++++.++++..++.++.+..| .+||||||||++||
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGqkQRv~lA 171 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP---------DSLSGGQAQRVAIA 171 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCh---------hhCCHHHHHHHHHH
Confidence 99999999999876 9999998852 11122 244666777777665544332 37999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+.+|++||||||||+||+.+.+.+.+.|.++.+ +|+|+|+|||+++.+. .||+|++|++|+|++.|+++|+++
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN---EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999998743 3689999999999986 599999999999999999999987
Q ss_pred cC
Q 005467 679 KG 680 (695)
Q Consensus 679 ~~ 680 (695)
+.
T Consensus 249 ~~ 250 (263)
T 2olj_A 249 RP 250 (263)
T ss_dssp SC
T ss_pred Cc
Confidence 53
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-50 Score=413.85 Aligned_cols=218 Identities=26% Similarity=0.386 Sum_probs=188.7
Q ss_pred ccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH
Q 005467 446 LMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 446 ~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR 525 (695)
.++.|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+ ....+|
T Consensus 12 ~~~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~ 87 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVR 87 (256)
T ss_dssp --CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHH
T ss_pred cCCeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHh
Confidence 3567999999999963 469999999999999999999999999999999999999999999999999876 456678
Q ss_pred hhhccccCCceeeee-eccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 526 EKIGFVGQEPQLLQM-DIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~-TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
+.||||+|++.+|.. |++||+.++.. ...+ ++++.++++..++.++....| .+||||||||++||
T Consensus 88 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~---------~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 88 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRV---------STYSKGMVRKLLIA 158 (256)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBG---------GGCCHHHHHHHHHH
T ss_pred hcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCCh---------hhCCHHHHHHHHHH
Confidence 899999999999876 99999988521 1122 245667777777766654422 37999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+.+|++||||||||+||+.+...+.+.|.++.+ +|+|+|++||+++.+.. ||+|++|++|++++.|+++|+.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ---EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999998753 36899999999999876 99999999999999999999975
Q ss_pred c
Q 005467 679 K 679 (695)
Q Consensus 679 ~ 679 (695)
.
T Consensus 236 ~ 236 (256)
T 1vpl_A 236 R 236 (256)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-50 Score=421.84 Aligned_cols=237 Identities=25% Similarity=0.398 Sum_probs=186.7
Q ss_pred hHHHhhccCCcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 423 KVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 423 rl~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
|+.++++.+++... . .......+.|+++||+|.| .++|+|+||+|++||++||+||||||||||+++|+|++
T Consensus 17 ~~~~~~~~~~~~~~--~-~~~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 17 GFGELFEKAKQNNN--N-RKTSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp HHHHHHHHCC--------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred HHHHHhcccccccc--c-ccccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 66777765543221 1 1111223469999999964 25999999999999999999999999999999999999
Q ss_pred cCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccc
Q 005467 503 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL 582 (695)
Q Consensus 503 ~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~ 582 (695)
+|++|+|.+|| +|+||+|++.+|++|++|||. +. ...+.++.++++.+++.+++..+|.+++|.
T Consensus 89 ~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~enl~-~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 152 (290)
T 2bbs_A 89 EPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENII-GV--SYDEYRYRSVIKACQLEEDISKFAEKDNIV 152 (290)
T ss_dssp CEEEEEEECCS-------------CEEEECSSCCCCSSBHHHHHH-TT--CCCHHHHHHHHHHTTCHHHHHTSTTGGGCB
T ss_pred CCCCcEEEECC-------------EEEEEeCCCccCcccHHHHhh-Cc--ccchHHHHHHHHHhChHHHHHhccccccch
Confidence 99999999998 499999999999999999998 62 223445667788889999999999999999
Q ss_pred cccc--ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHH-HhhhccccCcceEEEEeeecccccccCeE
Q 005467 583 VDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLSTIKAVDRI 659 (695)
Q Consensus 583 vge~--~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L-~~~~~~~~~~~TvIiIaHrlsti~~aD~I 659 (695)
+++. +||||||||++|||||+++|++||||||||+||+.++..+.+.+ .+. .+|+|+|+|||+++.++.||+|
T Consensus 153 ~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~----~~~~tviivtHd~~~~~~~d~i 228 (290)
T 2bbs_A 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL----MANKTRILVTSKMEHLKKADKI 228 (290)
T ss_dssp C----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC----TTTSEEEEECCCHHHHHHSSEE
T ss_pred hcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh----hCCCEEEEEecCHHHHHcCCEE
Confidence 9974 89999999999999999999999999999999999999998864 343 2368999999999998889999
Q ss_pred EEeeCCeEEEeccchhhhhcCchhHHHH
Q 005467 660 VVIDDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 660 vvL~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
++|++|++++.|+++|+++..+.|.+.+
T Consensus 229 ~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 256 (290)
T 2bbs_A 229 LILHEGSSYFYGTFSELQNLRPDFSSKL 256 (290)
T ss_dssp EEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred EEEECCeEEEeCCHHHHhhhcHHHHHHH
Confidence 9999999999999999987656665543
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=414.33 Aligned_cols=216 Identities=30% Similarity=0.481 Sum_probs=189.0
Q ss_pred EEEEEEeeecCCCCc--cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 450 VQFVNISFHYPSRPT--VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~--~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
|+++||+|+|+.... +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 3699999999999999999999999999999999999999999999999998753 67889
Q ss_pred hccccCCc--eeeeeeccccccccCCc----CCCchhHHHHHHHhhHh--HhHhcCCCCccccccccccCCccchhHHHH
Q 005467 528 IGFVGQEP--QLLQMDIKSNIMYGCPK----DVKNEDIEWAAKQAYVH--EFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 528 I~~V~Qd~--~LF~~TI~eNI~~g~~~----~~~~eei~~A~~~a~l~--~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
||||+|++ .+|..|++|||.++... ...++++.++++.+++. ++.+..| .+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---------~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP---------FFLSGGEKRRVAIA 150 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG---------GGSCHHHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh---------hhCCHHHHHHHHHH
Confidence 99999996 57789999999987311 11235678889998887 7766655 46999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||+.+|++||||||||+||+.+.+.+.+.|.++.+ +|+|+|+|||+++.+.. ||+|++|++|++++.|+++++++
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT---LGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999998743 36899999999999875 99999999999999999999986
Q ss_pred cC
Q 005467 679 KG 680 (695)
Q Consensus 679 ~~ 680 (695)
..
T Consensus 228 ~~ 229 (266)
T 2yz2_A 228 KY 229 (266)
T ss_dssp HS
T ss_pred Cc
Confidence 54
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=413.12 Aligned_cols=214 Identities=26% Similarity=0.418 Sum_probs=178.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh-HHHHhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREK 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~-~~lR~~ 527 (695)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+. +.+|+.
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 369999999999999999999999999999999999999999999999999987654 446788
Q ss_pred hccccCCceeee-eeccccccccCCc---C-----------CCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCC
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPK---D-----------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSG 590 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~---~-----------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSG 590 (695)
||||+|++.+|. .|++||+.++... . .+.++. ...+.+.++.+ |++..... .+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHH-----HHHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHH-----HHHHHHHHHHc--CCchhhCCCchhCCH
Confidence 999999999886 6999999987321 1 111111 11222333333 33333332 37999
Q ss_pred ccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEE
Q 005467 591 GQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIE 669 (695)
Q Consensus 591 GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive 669 (695)
|||||++|||||+.+|++||||||||+||+++.+.+.+.|.++.+ +|+|+|+|||+++.+. .||+|++|++|++++
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA---KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH---CCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998743 3689999999999986 599999999999999
Q ss_pred eccchh
Q 005467 670 VGNHAE 675 (695)
Q Consensus 670 ~Gth~e 675 (695)
.|+++|
T Consensus 234 ~g~~~~ 239 (257)
T 1g6h_A 234 EGRGEE 239 (257)
T ss_dssp EEESHH
T ss_pred EeCHHH
Confidence 999999
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-50 Score=406.14 Aligned_cols=210 Identities=28% Similarity=0.432 Sum_probs=179.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH---HHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR---WLR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~---~lR 525 (695)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+.. .+|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999964 4699999999999999999999999999999999999999999999999999877654 344
Q ss_pred -hhhccccCCceeee-eeccccccccCCc-CC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 526 -EKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 526 -~~I~~V~Qd~~LF~-~TI~eNI~~g~~~-~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
++||||+|++.+|. .|++||+.++... .. .++++.++++..++.++....| .+||||||||++|
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qrv~l 151 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKP---------YELSGGEQQRVAI 151 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG---------GGSCHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh---------hhCCHHHHHHHHH
Confidence 78999999999886 5999999886210 11 1234556666666554433322 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccc
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth 673 (695)
||||+.+|++||||||||+||+++++.+.+.|.++.+ +|+|+|+|||+++.++.||+|++|++|++++.|+.
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE---GGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 9999999999999999999999999999999998743 36899999999998878999999999999999974
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-50 Score=415.20 Aligned_cols=216 Identities=30% Similarity=0.455 Sum_probs=186.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc----------
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD---------- 518 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~---------- 518 (695)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 3899999999963 469999999999999999999999999999999999999999999999999862
Q ss_pred chh---HHHHhhhccccCCceeeee-eccccccccC--CcCCC----chhHHHHHHHhhHhHh-HhcCCCCccccccccc
Q 005467 519 LDI---RWLREKIGFVGQEPQLLQM-DIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHEF-ILSLPCGYETLVDDDL 587 (695)
Q Consensus 519 i~~---~~lR~~I~~V~Qd~~LF~~-TI~eNI~~g~--~~~~~----~eei~~A~~~a~l~~f-I~~LP~G~dT~vge~~ 587 (695)
++. ..+|+.||||+|++.+|.. |++|||.++. ....+ ++++.++++..++.++ ....| .+
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~---------~~ 153 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP---------VH 153 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG---------GG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCc---------cc
Confidence 332 4568899999999999876 9999998852 11112 3456677777777766 44433 36
Q ss_pred cCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCe
Q 005467 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGR 666 (695)
Q Consensus 588 LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~ 666 (695)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|.++.+ +|+|+|+|||+++.+. .||+|++|++|+
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~---~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 230 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE---EGKTMVVVTHEMGFARHVSSHVIFLHQGK 230 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH---TTCCEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999988743 3689999999999986 599999999999
Q ss_pred EEEeccchhhhhc
Q 005467 667 IIEVGNHAELLHK 679 (695)
Q Consensus 667 Ive~Gth~eLl~~ 679 (695)
+++.|+++++.+.
T Consensus 231 i~~~g~~~~~~~~ 243 (262)
T 1b0u_A 231 IEEEGDPEQVFGN 243 (262)
T ss_dssp EEEEECHHHHHHS
T ss_pred EEEeCCHHHHHhC
Confidence 9999999999865
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-50 Score=429.73 Aligned_cols=217 Identities=29% Similarity=0.493 Sum_probs=188.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc--chhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD--LDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~--i~~~~lR~ 526 (695)
.|+++||+++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+ .+....++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999964 469999999999999999999999999999999999999999999999999832 22334577
Q ss_pred hhccccCCceeee-eeccccccccCCc-CC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 527 KIGFVGQEPQLLQ-MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 527 ~I~~V~Qd~~LF~-~TI~eNI~~g~~~-~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
.||||+|++.||. .|++|||.|+... .. .++++.++++.+++.++.+..| ..||||||||+||||
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---------~~LSGGq~QRValAr 151 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP---------HELSGGQQQRAALAR 151 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG---------GGSCHHHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHH
Confidence 8999999999996 5999999998321 11 2346777888888877766655 369999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
||+.+|++|+||||||+||+.+...+++.|.+..+ ..|.|+|+|||+++.+. .||||+||++|+|++.|+++|++++
T Consensus 152 AL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~--~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 152 ALAPDPELILLDEPFSALDEQLRRQIREDMIAALR--ANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--HTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999999999988877643 24789999999999875 5999999999999999999999876
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-50 Score=418.10 Aligned_cols=216 Identities=25% Similarity=0.388 Sum_probs=184.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC--cchhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT--DLDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~--~i~~~~lR~ 526 (695)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. +.+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5899999999964 36999999999999999999999999999999999999999999999999997 777778899
Q ss_pred hhccccCCcee-eee--eccccccccCCc------CCC---chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 527 KIGFVGQEPQL-LQM--DIKSNIMYGCPK------DVK---NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 527 ~I~~V~Qd~~L-F~~--TI~eNI~~g~~~------~~~---~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
+||||+|++.+ |.. |++|||.++... ... ++++.++++..++.++....| .+|||||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGqkq 168 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI---------GYLSTGEKQ 168 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG---------GGSCHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHH
Confidence 99999999875 554 999999986311 011 234555666666654433222 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceE--EEEeeeccccc-ccCeEEEeeCCeEEEec
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV--IVIAHRLSTIK-AVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~Tv--IiIaHrlsti~-~aD~IvvL~~G~Ive~G 671 (695)
|++|||||+.+|++||||||||+||+++.+.+.+.|.++.+ +|+|+ |+|||+++.+. .||+|++|++|+|++.|
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~---~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSD---SYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---HCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHH---CCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999988743 26899 99999999985 59999999999999999
Q ss_pred cchhhhhc
Q 005467 672 NHAELLHK 679 (695)
Q Consensus 672 th~eLl~~ 679 (695)
+++|+.+.
T Consensus 246 ~~~~~~~~ 253 (279)
T 2ihy_A 246 AVEDILTS 253 (279)
T ss_dssp EHHHHCSH
T ss_pred CHHHHhcc
Confidence 99998764
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-49 Score=405.68 Aligned_cols=226 Identities=24% Similarity=0.317 Sum_probs=178.4
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh--hcCCCceEEEcCccCCcchhHHH-H
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-R 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl--y~p~~G~I~idG~di~~i~~~~l-R 525 (695)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 3899999999964 4699999999999999999999999999999999999 89999999999999988776655 4
Q ss_pred hhhccccCCceeeee-eccccccccCCc--C--CC----chhHHHHHHHhhHh-HhHhcCCCCccccccccc-cCCccch
Q 005467 526 EKIGFVGQEPQLLQM-DIKSNIMYGCPK--D--VK----NEDIEWAAKQAYVH-EFILSLPCGYETLVDDDL-LSGGQKQ 594 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~-TI~eNI~~g~~~--~--~~----~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~~-LSGGQkQ 594 (695)
+.++||+|++.+|.+ |++||+.++... . .. ++++.++++..++. ++.+..| .. |||||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---------~~~LSgGqkQ 150 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL---------NEGFSGGEKK 150 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT---------TCC----HHH
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc---------ccCCCHHHHH
Confidence 569999999999875 999999876210 1 11 23344555555542 3322211 24 9999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc--cCeEEEeeCCeEEEecc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~--aD~IvvL~~G~Ive~Gt 672 (695)
|++|||||+++|++||||||||+||+++++.+.+.|.++.+ +|+|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG---PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGG 227 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS---TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh---cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeC
Confidence 99999999999999999999999999999999999998742 37899999999999876 59999999999999999
Q ss_pred chhhhhc-CchhHHHHhh
Q 005467 673 HAELLHK-GRLYAKLVKR 689 (695)
Q Consensus 673 h~eLl~~-~g~Y~~l~~~ 689 (695)
+++.... ...|..+.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~ 245 (250)
T 2d2e_A 228 PELALELEAKGYEWLKEK 245 (250)
T ss_dssp HHHHHHHHHHCHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 8833221 1225555443
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-49 Score=406.78 Aligned_cols=217 Identities=22% Similarity=0.327 Sum_probs=191.0
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+|+ ++|+|+||+|++||++||+||||||||||+++|+|+++|+ |+|.+||.++.+++...+|++||
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 899999986 3899999999999999999999999999999999999999 99999999998888888999999
Q ss_pred cccCCceeeee-eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc-
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA- 607 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~- 607 (695)
||+|++.+|.. |++||+.++.....+++++.++++..++.++....| .+||||||||++|||||+++|+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qrv~lAraL~~~p~~ 147 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRST---------NQLSGGEWQRVRLAAVVLQITPQ 147 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBG---------GGCCHHHHHHHHHHHHHHHHCTT
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHHHcCCCc
Confidence 99999998864 999999987322223667888888888877654322 3799999999999999999999
Q ss_pred ------EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 608 ------ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 608 ------ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
+||||||||+||+.+++.+.+.|.++.+ +|+|+|+|||+++.+ +.||+|++|++|++++.|+++|+.+..
T Consensus 148 ~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~---~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 224 (249)
T 2qi9_C 148 ANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ---QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 224 (249)
T ss_dssp TCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSCHH
T ss_pred CCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCh
Confidence 9999999999999999999999998743 368999999999998 569999999999999999999997633
Q ss_pred chhHHHH
Q 005467 681 RLYAKLV 687 (695)
Q Consensus 681 g~Y~~l~ 687 (695)
.. .+.|
T Consensus 225 ~~-~~~~ 230 (249)
T 2qi9_C 225 NL-AQAY 230 (249)
T ss_dssp HH-HHHH
T ss_pred hH-HHHh
Confidence 33 4444
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-49 Score=429.14 Aligned_cols=215 Identities=30% Similarity=0.480 Sum_probs=189.0
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+++.+.+.. ++.|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999964 4699999999999999999999999999999999999999999999999999887765 4679
Q ss_pred ccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.||. .||+|||.|+.. ...+ ++++.++++..++.++.+..| ..||||||||+||||||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p---------~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTL 148 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh---------hHCCHHHHHHHHHHHHH
Confidence 99999999996 599999999731 1122 345667778887776655555 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+.+|++||||||||+||+.+...+.+.|+++.+. .|.|+|+|||+++.+. .||||+||++|+|++.|+++|++.+
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~--~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 9999999999999999999999999999988542 3689999999999875 5999999999999999999999875
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-49 Score=404.82 Aligned_cols=212 Identities=27% Similarity=0.438 Sum_probs=181.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+|+|++ +|+|+||+|++ |++||+||||||||||+++|+|+++|++|+|.+||+++.+.+ ..|++||
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999987643 3477899
Q ss_pred cccCCceeeee-eccccccccCCcC---CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCPKD---VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~~~---~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
||+|++.+|.. |++||+.++.... ..++++.++++..++.++.+..| .+||||||||++|||||+.+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGqkqRv~lAral~~~ 144 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP---------ARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG---------GGSCHHHHHHHHHHHHHTTC
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCCh---------hhCCHHHHHHHHHHHHHHcC
Confidence 99999999976 9999999873210 11345666677666655543333 37999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
|++||||||||+||+++++.+.+.|.++.+ ..|+|+|+|||+++.+. .||+|++|++|++++.|+++|++++.
T Consensus 145 p~lllLDEPts~LD~~~~~~~~~~l~~l~~--~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQR--EFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHHHHH--HHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999988743 13689999999999875 59999999999999999999998654
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-49 Score=424.42 Aligned_cols=216 Identities=33% Similarity=0.523 Sum_probs=188.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. ++.|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 4899999999963 3699999999999999999999999999999999999999999999999999877653 5789
Q ss_pred ccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++.+..| ..||||||||+||||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP---------WQLSGGQQQRVAIARAL 148 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999996 599999998721 1112 345677788888776655554 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
+.+|++|+||||||+||+.+...+.+.|+++.+. .|.|+|+|||+++.+. .||+|++|++|+|++.|+++|++++.
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKE--LGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999999987532 3689999999999874 59999999999999999999998753
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=421.19 Aligned_cols=216 Identities=27% Similarity=0.491 Sum_probs=190.3
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. ++.|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999877653 6789
Q ss_pred ccccCCceeee-eeccccccccCCc-CC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPK-DV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~-~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.+|. .|++|||.|+... .. .++++.++++..++.++.+..| .+||||||||+||||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP---------TQLSGGQQQRVALARAL 148 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999996 5999999997321 11 2356778888888887766655 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
+++|++|+||||||+||+.+.+.+.+.|+++.+. .|.|+|+|||+++.+. .||+|++|++|+|++.|+++|++++.
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQE--LGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999999887532 3689999999999874 59999999999999999999998763
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-49 Score=421.65 Aligned_cols=216 Identities=29% Similarity=0.521 Sum_probs=188.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|+++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .|+.|
T Consensus 14 ~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 89 (355)
T 1z47_A 14 TIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNV 89 (355)
T ss_dssp EEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSE
T ss_pred eEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcE
Confidence 59999999999422 369999999999999999999999999999999999999999999999999987653 47889
Q ss_pred ccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++.+..| .+||||||||+||||||
T Consensus 90 g~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~---------~~LSGGq~QRvalArAL 160 (355)
T 1z47_A 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP---------HELSGGQQQRVALARAL 160 (355)
T ss_dssp EEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc---------ccCCHHHHHHHHHHHHH
Confidence 99999999997 599999998731 1112 346777888888877766555 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+.+|++|+||||||+||+.+.+.+.+.|+++.+. .|+|+|+|||+++.+. .||+|++|++|+|++.|+++|++++
T Consensus 161 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 161 APRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDE--MGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp TTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999887532 3689999999999875 4999999999999999999999875
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-48 Score=419.59 Aligned_cols=215 Identities=30% Similarity=0.512 Sum_probs=184.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. ++.|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 5999999999963 4699999999999999999999999999999999999999999999999999877643 5789
Q ss_pred ccccCCceeee-eeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
|||+|++.+|. .|++|||.|+... ..+ ++++.++++..++.++.+..| .+||||||||+||||||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP---------AQLSGGQRQRVAVARAI 156 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT---------TTCCSSCHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHHHHHH
Confidence 99999999996 5999999998321 122 245777888888877766665 36999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
+.+|++|+||||||+||+.+.+.+.+.|+++.+. .|.|+|+|||+++.+. .||+|++|++|+|++.|+++|++++
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK--LKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999887532 3689999999999874 5999999999999999999999875
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=421.85 Aligned_cols=218 Identities=30% Similarity=0.469 Sum_probs=189.0
Q ss_pred eEEEEEEeeecCCCCccc--eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch---hHH
Q 005467 449 HVQFVNISFHYPSRPTVP--ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~--vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~---~~~ 523 (695)
.|+++||+++|++ .+ +|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999963 46 999999999999999999999999999999999999999999999999986521 234
Q ss_pred HHhhhccccCCceeee-eeccccccccCCc-CCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 524 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPK-DVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 524 lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~-~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
.|++||||+|++.+|. .|++|||.|+... ..+ ++++.++++..++.++.+..| .+||||||||+|
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---------~~LSGGq~QRva 150 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP---------RELSGAQQQRVA 150 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG---------GGSCHHHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHH
Confidence 5788999999999997 4999999997321 112 345777888888877766555 369999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhh
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAEL 676 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eL 676 (695)
|||||+.+|++|+||||||+||+.+...+.+.|+++.+. .|+|+|+|||+++.+. .||+|++|++|+|++.|+++|+
T Consensus 151 lAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR--LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH--HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999987532 3689999999999875 5999999999999999999999
Q ss_pred hhcC
Q 005467 677 LHKG 680 (695)
Q Consensus 677 l~~~ 680 (695)
+++.
T Consensus 229 ~~~p 232 (353)
T 1oxx_K 229 YDNP 232 (353)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 8753
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=418.80 Aligned_cols=214 Identities=32% Similarity=0.534 Sum_probs=188.1
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ . +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+. .|++||
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 789999999953 4 9999999999999999999999999999999999999999999999999987543 478999
Q ss_pred cccCCceeeee-eccccccccCCc--CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 530 FVGQEPQLLQM-DIKSNIMYGCPK--DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 530 ~V~Qd~~LF~~-TI~eNI~~g~~~--~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
||+|++.+|.. |++|||.|+... ...++++.++++..++.++.+..| .+||||||||+||||||+.+|
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~---------~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP---------LTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG---------GGSCHHHHHHHHHHHHTTSCC
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHHHHHcCC
Confidence 99999999975 999999987310 111267888888888877665554 369999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc-cccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KAVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
++|+||||||+||+.+.+.+.+.|+++.+. .|+|+|+|||+++.+ +.||+|++|++|+|++.|+++|++++.
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~--~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKK--NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999987532 368999999999887 459999999999999999999998753
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-48 Score=405.21 Aligned_cols=213 Identities=24% Similarity=0.297 Sum_probs=177.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh--hcCCCceEEEcCccCCcchhHHH-H
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWL-R 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl--y~p~~G~I~idG~di~~i~~~~l-R 525 (695)
.|+++||+|+|++ +++|+||||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999953 4699999999999999999999999999999999999 68999999999999988776655 4
Q ss_pred hhhccccCCceeeee-eccccccccCC--------cCCCch----hHHHHHHHhhHhHhHhcCCCCccccccc---c-cc
Q 005467 526 EKIGFVGQEPQLLQM-DIKSNIMYGCP--------KDVKNE----DIEWAAKQAYVHEFILSLPCGYETLVDD---D-LL 588 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~-TI~eNI~~g~~--------~~~~~e----ei~~A~~~a~l~~fI~~LP~G~dT~vge---~-~L 588 (695)
+.|+||+|++.+|.+ |+.||+.++.. +..+.+ ++.++++..++ ++...+ . +|
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~~~L 165 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM-----------PEDLLTRSVNVGF 165 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTC-----------CTTTTTSBTTTTC
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCC-----------ChhHhcCCcccCC
Confidence 469999999998875 89999976410 011222 23333444333 222211 2 49
Q ss_pred CCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc--cCeEEEeeCCe
Q 005467 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIVVIDDGR 666 (695)
Q Consensus 589 SGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~--aD~IvvL~~G~ 666 (695)
|||||||++|||||+.+|++||||||||+||+++.+.+.+.|.++.+ +|+|+|+|||+++.+.. ||+|++|++|+
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~---~g~tviivtHd~~~~~~~~~d~v~~l~~G~ 242 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD---GKRSFIIVTHYQRILDYIKPDYVHVLYQGR 242 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC---SSCEEEEECSSGGGGGTSCCSEEEEEETTE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeeCHHHHHhhcCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999988742 37899999999999875 89999999999
Q ss_pred EEEeccchhhhh
Q 005467 667 IIEVGNHAELLH 678 (695)
Q Consensus 667 Ive~Gth~eLl~ 678 (695)
+++.|+++++..
T Consensus 243 i~~~g~~~~~~~ 254 (267)
T 2zu0_C 243 IVKSGDFTLVKQ 254 (267)
T ss_dssp EEEEECTTHHHH
T ss_pred EEEEcCHHHHhh
Confidence 999999998754
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-48 Score=419.47 Aligned_cols=215 Identities=30% Similarity=0.457 Sum_probs=187.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc------chhH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD------LDIR 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~------i~~~ 522 (695)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+ .+.
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 4899999999963 469999999999999999999999999999999999999999999999999876 443
Q ss_pred HHHhhhccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhH
Q 005467 523 WLREKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI 596 (695)
Q Consensus 523 ~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRI 596 (695)
.++.||||+|++.+|. .|++|||.|+.. ...+ ++++.++++..++.++.+..| .+||||||||+
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~---------~~LSGGq~QRv 148 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP---------RELSGGQRQRV 148 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG---------GGSCHHHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc---------ccCCHHHHHHH
Confidence 3678999999999995 699999998731 1122 345777888888877765555 36999999999
Q ss_pred HHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchh
Q 005467 597 AIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAE 675 (695)
Q Consensus 597 aIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~e 675 (695)
||||||+.+|++|+||||||+||+.+...+.+.|+++.+. .|.|+|+|||+++.+. .||+|++|++|+|++.|+++|
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~--~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ--LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHh--cCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999887532 3689999999999875 599999999999999999999
Q ss_pred hhhc
Q 005467 676 LLHK 679 (695)
Q Consensus 676 Ll~~ 679 (695)
++.+
T Consensus 227 l~~~ 230 (372)
T 1g29_1 227 VYDK 230 (372)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 9875
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=396.19 Aligned_cols=209 Identities=21% Similarity=0.297 Sum_probs=179.6
Q ss_pred EEEEEEeeecCCC-CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 450 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~-~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
|+++||+++|++. ..+++|+|+||+|+ ||++||+||||||||||+++|+|++ |++|+|.+||.++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 01469999999999 9999999999999999999999999 9999999999998765 33 7889
Q ss_pred c-cccCCceeeeeeccccccccCC-cCCCchhHHHHHHHhhHh-HhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 529 G-FVGQEPQLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 529 ~-~V~Qd~~LF~~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
| ||+|++.+ +.|++||+.++.. .+..++++.++++..++. +.....| .+||||||||++|||||+.+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---------~~LSgGqkqRv~lAraL~~~ 146 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKL---------YKLSAGQSVLVRTSLALASQ 146 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBG---------GGSCHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCCh---------hhCCHHHHHHHHHHHHHHhC
Confidence 9 99999999 9999999998631 133456677777777665 4433221 37999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccC-eEEEeeCCeEEEeccchhhhhc
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVD-RIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD-~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|++|+||||||+||+++.+.+.+.|.++. + |+|+|||+++.+. .|| +|++|++|++++.|+++|+.+.
T Consensus 147 p~lllLDEPts~LD~~~~~~l~~~L~~~~-----~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 147 PEIVGLDEPFENVDAARRHVISRYIKEYG-----K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHSC-----S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHhc-----C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999998762 2 9999999999875 699 9999999999999999999854
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=394.58 Aligned_cols=211 Identities=25% Similarity=0.381 Sum_probs=178.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-|+++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|. +++.|
T Consensus 4 ~l~i~~l~~~y~~~--~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETTT--TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCCC--CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 38999999999622 3699999999999999999999999999999999999999999998 35689
Q ss_pred ccccCCceee-eeeccccccccCCcC---------CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 529 GFVGQEPQLL-QMDIKSNIMYGCPKD---------VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 529 ~~V~Qd~~LF-~~TI~eNI~~g~~~~---------~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
|||+|++.+| ..|++|||.++.... ..++++.++++..++.++....| .+||||||||++|
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGq~qrv~l 139 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF---------TSLSGGQRQLILI 139 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG---------GGSCHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh---------hhCCHHHHHHHHH
Confidence 9999999888 679999999873111 11245667777777766554322 3799999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||+.+|++||||||||+||+.+.+.+.+.|.++.+. .|+|+|+|||+++.+. .||+|++|++|+ ++.|+++|+.
T Consensus 140 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 140 ARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS--QNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHT--SCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999999999999999999999999999987531 3689999999999984 699999999999 9999999987
Q ss_pred hcCchhHHHH
Q 005467 678 HKGRLYAKLV 687 (695)
Q Consensus 678 ~~~g~Y~~l~ 687 (695)
+.. .+.+.|
T Consensus 217 ~~~-~~~~~~ 225 (253)
T 2nq2_C 217 TSE-NLTALF 225 (253)
T ss_dssp CHH-HHHHHH
T ss_pred CcH-HHHHHh
Confidence 542 344444
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=376.51 Aligned_cols=198 Identities=24% Similarity=0.350 Sum_probs=164.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||+++|++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. .+|+.|
T Consensus 10 ~l~~~~ls~~y~~----~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESSS----EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeCC----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 5899999999953 5999999999999999999999999999999999999999999999999875 368899
Q ss_pred ccccCCceeeee-eccccccccCCc---CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 529 GFVGQEPQLLQM-DIKSNIMYGCPK---DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 529 ~~V~Qd~~LF~~-TI~eNI~~g~~~---~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
+||+|++.+|.+ |++||+.++... ...++++.++++..++.++ ... -.+||||||||++|||||++
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~---------~~~LSgGqkqrv~laraL~~ 150 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKK---------LGELSQGTIRRVQLASTLLV 150 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSB---------GGGSCHHHHHHHHHHHHTTS
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCC---------hhhCCHHHHHHHHHHHHHHh
Confidence 999999999976 999999986210 1123456666666654432 111 13799999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEE
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 668 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Iv 668 (695)
+|++||||||||+||+++...+.+.|.++.+ +|+|+|++||+++.+..++..+++..|+|-
T Consensus 151 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~---~g~tiiivtHd~~~~~~~~d~v~~~~~~~~ 211 (214)
T 1sgw_A 151 NAEIYVLDDPVVAIDEDSKHKVLKSILEILK---EKGIVIISSREELSYCDVNENLHKYSTKID 211 (214)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHH---HHSEEEEEESSCCTTSSEEEEGGGGBC---
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEeCCccc
Confidence 9999999999999999999999999998743 368999999999999874444456667763
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-45 Score=383.71 Aligned_cols=237 Identities=14% Similarity=0.156 Sum_probs=197.5
Q ss_pred cccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCcccccccccccccccceEEEEEEeeecCCC
Q 005467 383 GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSR 462 (695)
Q Consensus 383 g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~ 462 (695)
+..+-+.+.+|+.+..+ ..++..++..+..+.++..+.+|+.++++.+++..... ....+..+.|+++||+|+|+
T Consensus 38 ~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~~~~~~~~~i~~~~vs~~y~-- 112 (305)
T 2v9p_A 38 AAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--GSWKSILTFFNYQNIELITF-- 112 (305)
T ss_dssp TTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--CCTHHHHHHHHHTTCCHHHH--
T ss_pred hcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--CcccccCCeEEEEEEEEEcC--
Confidence 34566777888877666 36777788888899999999999999998765432111 11122334699999999996
Q ss_pred CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeec
Q 005467 463 PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI 542 (695)
Q Consensus 463 ~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI 542 (695)
.++|+|+||+|+||+++|||||||||||||+++|+|+| +|+| +++|+|++++|++|+
T Consensus 113 --~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti 169 (305)
T 2v9p_A 113 --INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASL 169 (305)
T ss_dssp --HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGG
T ss_pred --hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccH
Confidence 36999999999999999999999999999999999999 8999 467999999999999
Q ss_pred cc-cccccCCcCCCchhHHHHHHHhhHhHhHhc-CCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCc
Q 005467 543 KS-NIMYGCPKDVKNEDIEWAAKQAYVHEFILS-LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620 (695)
Q Consensus 543 ~e-NI~~g~~~~~~~eei~~A~~~a~l~~fI~~-LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~ 620 (695)
+| ||.++ + ++++ +++++++. ||+|+| ..+|||||||| |||++++|+||| ||+||+
T Consensus 170 ~~~ni~~~-~-~~~~----------~~~~~i~~~L~~gld----g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 170 ADTRAALV-D-DATH----------ACWRYFDTYLRNALD----GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp TTCSCEEE-E-EECH----------HHHHHHHHTTTGGGG----TCCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred HHHhhccC-c-cccH----------HHHHHHHHHhHccCC----ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 97 99998 3 4442 45778888 999998 45899999999 999999999999 999999
Q ss_pred ccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHHhhhc
Q 005467 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVKRQT 691 (695)
Q Consensus 621 ~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 691 (695)
++|+.|+. +|||+++++.||+| +|++|+|++.|+|+|| ++.|+++|+.|.
T Consensus 227 ~~~~~i~~-----------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~~~ 276 (305)
T 2v9p_A 227 QAEDRYLY-----------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGRLD 276 (305)
T ss_dssp TTCGGGGG-----------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTTTT
T ss_pred HHHHHHHH-----------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHHcc
Confidence 99998851 28999999999999 9999999999999999 889999998664
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=354.05 Aligned_cols=203 Identities=27% Similarity=0.320 Sum_probs=164.6
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ ..|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceE
Confidence 4899999999953 37999999999999999999999999999999999999999999861 369
Q ss_pred ccccCCcee-eeeeccccccccCCcCC-CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 529 GFVGQEPQL-LQMDIKSNIMYGCPKDV-KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 529 ~~V~Qd~~L-F~~TI~eNI~~g~~~~~-~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
|||+|++.+ ++.|+.||+........ .++++.++++..++.++....| ..||||||||++|||||+.+|
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSGGe~qrv~lAraL~~~p 420 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREV---------NELSGGELQRVAIAATLLRDA 420 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBG---------GGCCHHHHHHHHHHHHHTSCC
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCCh---------hhCCHHHHHHHHHHHHHHhCC
Confidence 999999876 56799888865310111 1223333344333332221111 379999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeC--CeEEEeccchhhhhc
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLHK 679 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~--G~Ive~Gth~eLl~~ 679 (695)
++|||||||++||..+...|.+.|+++.+. .|+|+|+|||+++.+.. ||||++|++ |+++..|++++++..
T Consensus 421 ~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~--~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 421 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 999999999999999999999999987421 36899999999999864 999999996 889999999998753
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=356.32 Aligned_cols=203 Identities=28% Similarity=0.327 Sum_probs=168.0
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ ..|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 4899999999953 37999999999999999999999999999999999999999999862 369
Q ss_pred ccccCCcee-eeeeccccccccCCcCC-CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 529 GFVGQEPQL-LQMDIKSNIMYGCPKDV-KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 529 ~~V~Qd~~L-F~~TI~eNI~~g~~~~~-~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
|||||++.+ ++.|+.||+.+...... .++++.++++..++.++.+..| ..||||||||++|||||+++|
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSGGe~QRv~iAraL~~~p 490 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNV---------EDLSGGELQRVAIAATLLRDA 490 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBG---------GGCCHHHHHHHHHHHHHTSCC
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCCh---------hhCCHHHHHHHHHHHHHHhCC
Confidence 999999875 56799999875410111 2234455555555543322211 379999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeC--CeEEEeccchhhhhc
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLHK 679 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~--G~Ive~Gth~eLl~~ 679 (695)
++|||||||++||..+...+.+.|+++.+ ..|+|+|+|||++..+.. ||||++|++ |+++..|++++++..
T Consensus 491 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~--~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 491 DIYLLDEPSAYLDVEQRLAVSRAIRHLME--KNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHH--HTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 99999999999999999999999998743 136899999999999865 999999996 888999999998763
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-37 Score=348.82 Aligned_cols=203 Identities=20% Similarity=0.262 Sum_probs=167.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|. .+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------IL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------ee
Confidence 5899999999963 3688999999999999999999999999999999999999999998763 47
Q ss_pred ccccCCcee-eeeeccccccccCCcC--CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 529 GFVGQEPQL-LQMDIKSNIMYGCPKD--VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 529 ~~V~Qd~~L-F~~TI~eNI~~g~~~~--~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
++++|+... |..|+++|+.+..... ...+.+.++++..++.++.+..| ..||||||||++|||||+++
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSGGq~QRv~iAraL~~~ 403 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNV---------NDLSGGELQKLYIAATLAKE 403 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBG---------GGCCHHHHHHHHHHHHHHSC
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCCh---------hhCCHHHHHHHHHHHHHHcC
Confidence 899999864 5789999998752111 12334455666666554433322 37999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeC--CeEEEeccchhhhh
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLH 678 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~--G~Ive~Gth~eLl~ 678 (695)
|++|||||||++||..+...|.+.|+++.+. .|+|+|+|||+++.+.. ||||+||++ |.+...|++.++..
T Consensus 404 p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~--~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 404 ADLYVLDQPSSYLDVEERYIVAKAIKRVTRE--RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 9999999999999999999999999987532 46899999999999875 999999986 66777777776654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-37 Score=363.87 Aligned_cols=215 Identities=24% Similarity=0.391 Sum_probs=149.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCc-cCCcchhH-----
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF-PLTDLDIR----- 522 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~-di~~i~~~----- 522 (695)
-|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. .+.-+..+
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~l 749 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHI 749 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHHG
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhhh
Confidence 48999999999753 247999999999999999999999999999999999999999999999873 11000000
Q ss_pred ------HHHhhhccccC----------------------------------------------Cceee--eeeccccccc
Q 005467 523 ------WLREKIGFVGQ----------------------------------------------EPQLL--QMDIKSNIMY 548 (695)
Q Consensus 523 ------~lR~~I~~V~Q----------------------------------------------d~~LF--~~TI~eNI~~ 548 (695)
..++.+.+..| ..+.+ +.|++|||.+
T Consensus 750 ~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l 829 (986)
T 2iw3_A 750 ESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGM 829 (986)
T ss_dssp GGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTS
T ss_pred hcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhc
Confidence 01112222111 11112 3467778776
Q ss_pred cCC--cCC--------CchhHHHH-HH--------------------HhhHhHhHhcCCCCccccc-cc---cccCCccc
Q 005467 549 GCP--KDV--------KNEDIEWA-AK--------------------QAYVHEFILSLPCGYETLV-DD---DLLSGGQK 593 (695)
Q Consensus 549 g~~--~~~--------~~eei~~A-~~--------------------~a~l~~fI~~LP~G~dT~v-ge---~~LSGGQk 593 (695)
+.. +.. ..+++.+. .+ ...+.+.++.+ |++... .. .+||||||
T Consensus 830 ~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l--GL~~~~~~~~~~~~LSGGQk 907 (986)
T 2iw3_A 830 KSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML--GLDPEIVSHSRIRGLSGGQK 907 (986)
T ss_dssp TTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT--TCCHHHHHHSCGGGCCHHHH
T ss_pred ccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc--CCCchhhcCCCccccCHHHH
Confidence 521 000 00111000 00 01122333332 343322 11 37999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEecc
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gt 672 (695)
||++||||++.+|++|||||||++||.++...+.+.|++. +.|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 908 QRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~------g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 908 VKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF------EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC------SSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh------CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999998888764 369999999999985 599999999999998774
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=346.23 Aligned_cols=205 Identities=24% Similarity=0.388 Sum_probs=138.1
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHH---------------------HHHHhhhcCC-------CceEEEcCccC
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFV---------------------NLLLRLYEPS-------DGQIYIDGFPL 516 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl---------------------~LL~rly~p~-------~G~I~idG~di 516 (695)
.++|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3689999999999999999999999999998 8999999998 55666777655
Q ss_pred CcchhHHHHhhhccccCCceee--------------------eeeccccccccCCcCCCc--hh-----HHHHHHHhhHh
Q 005467 517 TDLDIRWLREKIGFVGQEPQLL--------------------QMDIKSNIMYGCPKDVKN--ED-----IEWAAKQAYVH 569 (695)
Q Consensus 517 ~~i~~~~lR~~I~~V~Qd~~LF--------------------~~TI~eNI~~g~~~~~~~--ee-----i~~A~~~a~l~ 569 (695)
.. ..|+.+++|+|.+.++ ..|+.||+.+.......+ .+ +.++.+..+
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 184 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLG-- 184 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHH--
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH--
Confidence 33 2355678888765543 458999998752111111 11 111122221
Q ss_pred HhHhcCCCCccccc-cc--cccCCccchhHHHHHHhhcCCc--EEEEeccccccCcccchhhhhHHHhhhccccCcceEE
Q 005467 570 EFILSLPCGYETLV-DD--DLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644 (695)
Q Consensus 570 ~fI~~LP~G~dT~v-ge--~~LSGGQkQRIaIARAll~~p~--ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvI 644 (695)
.++.+ |++... .. ..||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++.+ .|.|+|
T Consensus 185 -~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~---~g~tvi 258 (670)
T 3ux8_A 185 -FLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD---LGNTLI 258 (670)
T ss_dssp -HHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH---TTCEEE
T ss_pred -HHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH---cCCEEE
Confidence 22222 222111 11 3799999999999999999988 9999999999999999999999998853 378999
Q ss_pred EEeeecccccccCeEEEe------eCCeEEEeccchhhhhcCc
Q 005467 645 VIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGR 681 (695)
Q Consensus 645 iIaHrlsti~~aD~IvvL------~~G~Ive~Gth~eLl~~~g 681 (695)
+|||+++.+..||+|++| ++|++++.|+++|+.+...
T Consensus 259 ~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 259 VVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp EECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred EEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 999999998889999999 8999999999999987654
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-36 Score=343.23 Aligned_cols=194 Identities=25% Similarity=0.282 Sum_probs=158.5
Q ss_pred EEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE---------EEcCccCCcchhHH
Q 005467 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI---------YIDGFPLTDLDIRW 523 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I---------~idG~di~~i~~~~ 523 (695)
+||+++|++. ..+|+|+| +|++||++||+||||||||||+++|+|+++|++|++ .++|.++.++....
T Consensus 95 ~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 95 EDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp GSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhh
Confidence 8999999643 24899999 999999999999999999999999999999999997 56777765442222
Q ss_pred H--HhhhccccCCc----eeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 524 L--REKIGFVGQEP----QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 524 l--R~~I~~V~Qd~----~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
. +..+++++|+. .++.+|++||+... + ..+++.++++..++.++.+..| ..||||||||++
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~---~-~~~~~~~~L~~lgL~~~~~~~~---------~~LSGGekQRva 238 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV---D-EVGKFEEVVKELELENVLDREL---------HQLSGGELQRVA 238 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT---C-CSSCHHHHHHHTTCTTGGGSBG---------GGCCHHHHHHHH
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhhhh---H-HHHHHHHHHHHcCCCchhCCCh---------hhCCHHHHHHHH
Confidence 2 23577778764 34556999998643 1 2456778888887765543322 369999999999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCC
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 665 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G 665 (695)
|||||+.+|++||||||||+||+.+...+.+.|+++.+ .|+|+|+|||+++.+.. ||+|++|++|
T Consensus 239 IAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~---~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 239 IAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN---EGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999999999999999999998853 36899999999998865 9999999864
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-36 Score=349.01 Aligned_cols=207 Identities=30% Similarity=0.392 Sum_probs=146.5
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh---------------------hhcCCCceEEEcCccCCcchhHH
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR---------------------LYEPSDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r---------------------ly~p~~G~I~idG~di~~i~~~~ 523 (695)
.++|+||||+|++||++||+||||||||||++++++ -+.+.+|.|.++|.++...+...
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcc
Confidence 358999999999999999999999999999987641 12334578999999886544322
Q ss_pred HHhhh-----------------------------------------ccccCCceee------------------------
Q 005467 524 LREKI-----------------------------------------GFVGQEPQLL------------------------ 538 (695)
Q Consensus 524 lR~~I-----------------------------------------~~V~Qd~~LF------------------------ 538 (695)
.+... |++.|+..++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 22222 3333333332
Q ss_pred ---------eeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCC-
Q 005467 539 ---------QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP- 606 (695)
Q Consensus 539 ---------~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p- 606 (695)
..|++||+.+.. .....++.. +.+..+.-++ ...+. ..||||||||++|||||+.+|
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~-~~~~~~~~~---------~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFA-SIPKIKRKL---------ETLYDVGLGY-MKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTT-TCHHHHHHH---------HHHHHTTCTT-SBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred cCCCHHHHhhCCHHHHHHHHH-HhhhHHHHH---------HHHHHcCCch-hhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 235555555441 110111111 2222221111 11222 389999999999999999886
Q ss_pred --cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe------eCCeEEEeccchhhhh
Q 005467 607 --AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLH 678 (695)
Q Consensus 607 --~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL------~~G~Ive~Gth~eLl~ 678 (695)
++||||||||+||+.+.+.|.+.|+++.+ .|+|+|+|||+++.++.||+|++| ++|+|++.|+++|+.+
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~---~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVD---NGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 59999999999999999999999998853 378999999999999999999999 8999999999999987
Q ss_pred cCchhHH
Q 005467 679 KGRLYAK 685 (695)
Q Consensus 679 ~~g~Y~~ 685 (695)
....|..
T Consensus 641 ~~~~~~~ 647 (670)
T 3ux8_A 641 VKESHTG 647 (670)
T ss_dssp CTTCHHH
T ss_pred CCccHHH
Confidence 6555543
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-36 Score=338.81 Aligned_cols=197 Identities=24% Similarity=0.281 Sum_probs=156.7
Q ss_pred EEE-EEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE---------EEcCccCCcc
Q 005467 450 VQF-VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI---------YIDGFPLTDL 519 (695)
Q Consensus 450 I~f-~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I---------~idG~di~~i 519 (695)
.++ +||+++|++. ..+|+|+| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++.+.
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 456 6999999643 25899999 999999999999999999999999999999999996 4677766543
Q ss_pred hhHHH--HhhhccccCCcee----eeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccc
Q 005467 520 DIRWL--REKIGFVGQEPQL----LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 593 (695)
Q Consensus 520 ~~~~l--R~~I~~V~Qd~~L----F~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQk 593 (695)
..... +..+++++|+..+ +.+|+.||+... + ..+++.++++..++.+..+..| ..||||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---~-~~~~~~~~l~~lgl~~~~~~~~---------~~LSgGek 164 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---D-ETGKLEEVVKALELENVLEREI---------QHLSGGEL 164 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH---C-SSSCHHHHHHHTTCTTTTTSBG---------GGCCHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh---h-HHHHHHHHHHHcCCChhhhCCh---------hhCCHHHH
Confidence 22222 2357788887543 345888888643 1 2456778888887654322211 36999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCC
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDG 665 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G 665 (695)
||++|||||+.+|++||||||||+||+++...+.+.|+++.+ .|+|+|+|||++..+.. ||+|++|++|
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~---~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE---EGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999998753 36899999999999865 9999999865
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=339.70 Aligned_cols=203 Identities=22% Similarity=0.328 Sum_probs=166.2
Q ss_pred EEEEeeecCCCCccceeeeeeeEeecC-----cEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHh
Q 005467 452 FVNISFHYPSRPTVPILNHVCLTIEAN-----EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (695)
Q Consensus 452 f~nVsF~Y~~~~~~~vL~~isl~I~~G-----e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~ 526 (695)
.++++|+|++. ..+++|+||++++| |++||+||||||||||+++|+|+.+|++|+. +. +.
T Consensus 349 ~~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~ 413 (608)
T 3j16_B 349 SASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KL 413 (608)
T ss_dssp SSSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SC
T ss_pred ccceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CC
Confidence 36788999753 35899999999999 7899999999999999999999999999973 21 23
Q ss_pred hhccccCCce-eeeeeccccccccCCcC-CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 527 KIGFVGQEPQ-LLQMDIKSNIMYGCPKD-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 527 ~I~~V~Qd~~-LF~~TI~eNI~~g~~~~-~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
.++|++|+.. .|+.|+++|+....... .+.+...++++..++.++.+..| ..||||||||++|||||..
T Consensus 414 ~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---------~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 414 NVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEV---------QHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp CEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBS---------SSCCHHHHHHHHHHHHTTS
T ss_pred cEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCCh---------hhCCHHHHHHHHHHHHHHh
Confidence 6899999975 56789999986432111 23344555666666554433322 3699999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeC--CeEEEeccchhhhhcC
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDD--GRIIEVGNHAELLHKG 680 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~--G~Ive~Gth~eLl~~~ 680 (695)
+|++|||||||++||+.+...+.+.|+++.+ ..|+|+|+|||++..+.. ||||+||++ |+++..|++++++...
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~--~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~ 561 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFIL--HNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGC 561 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHH--HHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhhh
Confidence 9999999999999999999999999988743 136899999999999865 999999997 9999999999999764
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-34 Score=338.40 Aligned_cols=199 Identities=27% Similarity=0.354 Sum_probs=163.8
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
..+...|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+| |+| +|.+... . ..
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~----~--~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE----E--CR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT----T--SC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc----c--ee
Confidence 35888899999964 469999999999999999999999999999999996 665 6655421 1 23
Q ss_pred hccccCCc-eee-eeeccccccccCCcCCCchhHHHHHHHhhHh-HhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 528 IGFVGQEP-QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH-EFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 528 I~~V~Qd~-~LF-~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~-~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
++|++|++ .++ ..|+.||+.+. .... ++++.++++..++. +..+..+ ..||||||||++|||||+.
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~-~~~~-~~~v~~~L~~lgL~~~~~~~~~---------~~LSGGqkQRvaLArAL~~ 565 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFES-GVGT-KEAIKDKLIEFGFTDEMIAMPI---------SALSGGWKMKLALARAVLR 565 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTT-CSSC-HHHHHHHHHHTTCCHHHHHSBG---------GGCCHHHHHHHHHHHHHHT
T ss_pred EEEEcccccccccCCcHHHHHHHh-hcCH-HHHHHHHHHHcCCChhhhcCCc---------ccCCHHHHHHHHHHHHHhc
Confidence 78999985 344 56999999762 1122 66788888888873 4443322 3699999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE-EeccchhhhhcC
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII-EVGNHAELLHKG 680 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv-e~Gth~eLl~~~ 680 (695)
+|++|||||||++||+.+.+.+.+.|.+ . |+|+|+|||++..+.. ||+|++|++|+++ ..|+++|+++..
T Consensus 566 ~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~----g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~~ 637 (986)
T 2iw3_A 566 NADILLLDEPTNHLDTVNVAWLVNYLNT--C----GITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKC 637 (986)
T ss_dssp TCSEEEEESTTTTCCHHHHHHHHHHHHH--S----CSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHC
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHh--C----CCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhhh
Confidence 9999999999999999999999998876 2 5899999999999865 9999999999997 589999987644
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=338.09 Aligned_cols=192 Identities=15% Similarity=0.113 Sum_probs=157.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCc-e-EEEcCccCCcchhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-Q-IYIDGFPLTDLDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G-~-I~idG~di~~i~~~~lR~ 526 (695)
.++++||+|+|+ ++||++++|++++|+||||||||||+|+|+|++.|++| + |++|| + .|+
T Consensus 118 mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~ 179 (460)
T 2npi_A 118 MKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQ 179 (460)
T ss_dssp HHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTS
T ss_pred hhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccC
Confidence 488999999993 79999999999999999999999999999999999999 9 99998 1 367
Q ss_pred hhccccCCceeee----eeccccccccCCc--C-CCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 527 KIGFVGQEPQLLQ----MDIKSNIMYGCPK--D-VKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 527 ~I~~V~Qd~~LF~----~TI~eNI~~g~~~--~-~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
.+++|||+..+|. .|++||+ ++... . ..++++.++++..++. .......||||||||++||
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~-----------~~~~~~~LSgGq~qrlalA 247 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLE-----------RINENKDLYLECISQLGQV 247 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSS-----------SGGGCHHHHHHHHHHHHHH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCC-----------cccchhhhhHHHHHHHHHH
Confidence 8999999998765 4899999 76321 1 1123333344444433 3222348999999999999
Q ss_pred HH--hhcCCcE----EEEec-cccccCcccchhhhhHHHhhhccccCcceEEEEeeecc------cc-cccCe-----EE
Q 005467 600 RA--ILRDPAI----LLLDE-ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS------TI-KAVDR-----IV 660 (695)
Q Consensus 600 RA--ll~~p~I----LILDE-aTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrls------ti-~~aD~-----Iv 660 (695)
|| |+.+|++ ||||| ||++||+. .+.+.+.+++. ++|+|+|+|+.+ .+ +.||+ |+
T Consensus 248 ra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~------~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi 320 (460)
T 2npi_A 248 VGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL------NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIF 320 (460)
T ss_dssp HHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT------TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEE
T ss_pred HHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh------CCCEEEEEccCchhhhHHHHHHhcccccCCEEE
Confidence 99 9999999 99999 99999999 66666666553 579999999988 44 45999 99
Q ss_pred Eee-CCeEEEeccchhhhh
Q 005467 661 VID-DGRIIEVGNHAELLH 678 (695)
Q Consensus 661 vL~-~G~Ive~Gth~eLl~ 678 (695)
+|+ +|+|+ .|+++++.+
T Consensus 321 ~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 321 FIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp EECCCTTCC-CCCHHHHHH
T ss_pred EEeCCCcEE-ECCHHHHhh
Confidence 999 99999 999999854
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-33 Score=335.50 Aligned_cols=218 Identities=29% Similarity=0.428 Sum_probs=152.0
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHH---------HHHHhhhcCC------Cc------eEEEcCccCCcch----
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFV---------NLLLRLYEPS------DG------QIYIDGFPLTDLD---- 520 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl---------~LL~rly~p~------~G------~I~idG~di~~i~---- 520 (695)
+.|+||||+|++|+++||+|+||||||||+ +++.+...+. +| .|.+|+.++....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 3333333332 23 2555555543211
Q ss_pred ------hHHHHhh-------------------------------hccccCCceeee-eeccccccccCCcCC--------
Q 005467 521 ------IRWLREK-------------------------------IGFVGQEPQLLQ-MDIKSNIMYGCPKDV-------- 554 (695)
Q Consensus 521 ------~~~lR~~-------------------------------I~~V~Qd~~LF~-~TI~eNI~~g~~~~~-------- 554 (695)
.+.+|+. .|++.|+..++. .++..|.+.|...+.
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 1122322 356666665553 345555554421000
Q ss_pred --C-----chhHHHHHHH-------hhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCC---cEEEEeccc
Q 005467 555 --K-----NEDIEWAAKQ-------AYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDP---AILLLDEAT 615 (695)
Q Consensus 555 --~-----~eei~~A~~~-------a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p---~ILILDEaT 615 (695)
+ +..+.++++. ....+.+..+.-|| ..+|. .+|||||||||+|||||+++| ++|||||||
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPT 836 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPT 836 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTGGG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTT
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCCch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCC
Confidence 0 0112222221 12223334433333 23454 389999999999999999875 799999999
Q ss_pred cccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe------eCCeEEEeccchhhhhcCchhHHHH
Q 005467 616 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 616 SaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL------~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
++||+.+++.+++.|+++.+ +|+|||+|+|+++.++.||+|++| ++|+|+++|+|+|+++..+.|..-|
T Consensus 837 sGLD~~~~~~L~~lL~~L~~---~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt~~~ 911 (916)
T 3pih_A 837 VGLHFEDVRKLVEVLHRLVD---RGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRF 911 (916)
T ss_dssp TTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchHHHHH
Confidence 99999999999999998853 378999999999999999999999 8999999999999999887776544
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-33 Score=323.63 Aligned_cols=197 Identities=22% Similarity=0.327 Sum_probs=150.0
Q ss_pred EEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE-----------EEcCccCCcchhH
Q 005467 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-----------YIDGFPLTDLDIR 522 (695)
Q Consensus 454 nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I-----------~idG~di~~i~~~ 522 (695)
|++++|+.. ...|++++ ++++||++||+||||||||||+|+|+|+++|++|+| .++|.++.++...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 578999753 35788877 699999999999999999999999999999999998 4555555444444
Q ss_pred HHHhhhccc--cCCce----eeee---eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccc
Q 005467 523 WLREKIGFV--GQEPQ----LLQM---DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 593 (695)
Q Consensus 523 ~lR~~I~~V--~Qd~~----LF~~---TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQk 593 (695)
.+++.+..+ +|... .+.+ ++.+++... ....++++.++++..++.+..+..+ ..||||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~--~~~~~~~~~~~l~~~gl~~~~~~~~---------~~LSgGe~ 227 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR--MEKSPEDVKRYIKILQLENVLKRDI---------EKLSGGEL 227 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH--CCSCHHHHHHHHHHHTCTGGGGSCT---------TTCCHHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh--hhhHHHHHHHHHHHcCCcchhCCCh---------HHCCHHHH
Confidence 444444322 22211 1111 334444333 1234467778888888766655443 36999999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeE
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 667 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~I 667 (695)
||++|||||+.+|++||||||||+||+++...+.+.|+++.+ +|+|+|+|||+++.+.. ||+|++|++|..
T Consensus 228 Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~---~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA---PTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT---TTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999999999999999999999999999999998853 47899999999999875 999999998653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-33 Score=316.45 Aligned_cols=193 Identities=20% Similarity=0.279 Sum_probs=153.5
Q ss_pred EEEeeecCCCCccceeeeeeeEee-cCcEEEEEeecCCChhhHHHHHHhhhcCCCceE-----------EEcCccCCcch
Q 005467 453 VNISFHYPSRPTVPILNHVCLTIE-ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-----------YIDGFPLTDLD 520 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~-~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I-----------~idG~di~~i~ 520 (695)
++++.+|+.+ -++-..|.++ +||++||+||||||||||+|+|+|+++|++|+| .++|.++..+.
T Consensus 3 ~~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~ 78 (538)
T 3ozx_A 3 GEVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYF 78 (538)
T ss_dssp CCEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHH
T ss_pred CCCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHH
Confidence 3567889642 3455555555 899999999999999999999999999999999 67888776543
Q ss_pred hHHH------HhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 521 IRWL------REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 521 ~~~l------R~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
.... +..+.++.|.+.++.+|+++++... ...+++.++++..++.+..+..+ ..|||||||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~----~~~~~~~~~l~~l~l~~~~~~~~---------~~LSgGe~Q 145 (538)
T 3ozx_A 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKI----DERGKKDEVKELLNMTNLWNKDA---------NILSGGGLQ 145 (538)
T ss_dssp HHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHH----CCSSCHHHHHHHTTCGGGTTSBG---------GGCCHHHHH
T ss_pred HHHhhcccchhhccchhhhhhhhccCcHHHHhhcc----hhHHHHHHHHHHcCCchhhcCCh---------hhCCHHHHH
Confidence 3222 2346677777777888998887533 12456777888887755432211 379999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCe
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 666 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~ 666 (695)
|++|||||+.+|+|||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|.
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~----~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL----KNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC----TTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh----CCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999999999883 36899999999999865 99999998754
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-32 Score=323.12 Aligned_cols=221 Identities=22% Similarity=0.337 Sum_probs=158.7
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHH-HHhhhc-------C---------------
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL-LLRLYE-------P--------------- 504 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~L-L~rly~-------p--------------- 504 (695)
..|+++|+++ .+|+||||+|++||++||+|+||||||||++. |.|+.. |
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 3589999986 16999999999999999999999999999996 777652 2
Q ss_pred ---CCc-------eEEEcCccCCcchh----------HHHHhhhccccCCc--------eeee-----------------
Q 005467 505 ---SDG-------QIYIDGFPLTDLDI----------RWLREKIGFVGQEP--------QLLQ----------------- 539 (695)
Q Consensus 505 ---~~G-------~I~idG~di~~i~~----------~~lR~~I~~V~Qd~--------~LF~----------------- 539 (695)
.+| .|.+||.++..-+. +.+|+.++.++++- +-|+
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 466 68999988864332 34555444433210 0111
Q ss_pred -------------------------------eeccccccccCCcCCCchhHHHH---HHHhhHhHhHhcCCCCccccccc
Q 005467 540 -------------------------------MDIKSNIMYGCPKDVKNEDIEWA---AKQAYVHEFILSLPCGYETLVDD 585 (695)
Q Consensus 540 -------------------------------~TI~eNI~~g~~~~~~~eei~~A---~~~a~l~~fI~~LP~G~dT~vge 585 (695)
.||.||+.+.. .+.+... -+...+.+.++.+.-++. .++.
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv-----~e~l~~~~~~~~~~~~~~~L~~~gL~~~-~l~~ 726 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTV-----DEAHDFFADESAIFRALDTLREVGLGYL-RLGQ 726 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBH-----HHHHHHTTTSHHHHHHHHHHHHTTCTTS-BTTC
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccH-----HHHHHHhhcchHHHHHHHHHHHcCCCcc-cccC
Confidence 13333333220 0000000 001123344555433321 2343
Q ss_pred --cccCCccchhHHHHHHhhcC---CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEE
Q 005467 586 --DLLSGGQKQRIAIARAILRD---PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 660 (695)
Q Consensus 586 --~~LSGGQkQRIaIARAll~~---p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~Iv 660 (695)
..||||||||++|||||+++ |++|||||||++||..+.+.+.+.|+++.+ .|+|||+|||+++.++.||+|+
T Consensus 727 ~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~---~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 727 PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD---AGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEE
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHhCCEEE
Confidence 38999999999999999996 799999999999999999999999998753 3789999999999998899999
Q ss_pred Ee------eCCeEEEeccchhhhhcCchhHH
Q 005467 661 VI------DDGRIIEVGNHAELLHKGRLYAK 685 (695)
Q Consensus 661 vL------~~G~Ive~Gth~eLl~~~g~Y~~ 685 (695)
+| ++|+|++.|+++|+.+....|..
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~~~~t~ 834 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAAGSVTA 834 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCTTCSSH
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCchhHHH
Confidence 99 69999999999999887655543
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=315.79 Aligned_cols=225 Identities=28% Similarity=0.370 Sum_probs=154.8
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHH-h----hhc---CCCc-------------
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-R----LYE---PSDG------------- 507 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~-r----ly~---p~~G------------- 507 (695)
.++++|++. .+|+||||+|++||++||+|+||||||||++.++ | .+. +..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 488999852 3699999999999999999999999999999864 2 221 2344
Q ss_pred eEEEcCccCCcch---h-------HHHH---------hhhccccCCcee---------------------eeeeccc--c
Q 005467 508 QIYIDGFPLTDLD---I-------RWLR---------EKIGFVGQEPQL---------------------LQMDIKS--N 545 (695)
Q Consensus 508 ~I~idG~di~~i~---~-------~~lR---------~~I~~V~Qd~~L---------------------F~~TI~e--N 545 (695)
.|.+||.++..-. + +..| +.+||++|...+ |-.++.. .
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 3788888874211 1 1122 356888886321 1111100 0
Q ss_pred ccccCC----------cCCCchh-----HHHHHH-------HhhHhHhHhcCCCCccc-cccc--cccCCccchhHHHHH
Q 005467 546 IMYGCP----------KDVKNED-----IEWAAK-------QAYVHEFILSLPCGYET-LVDD--DLLSGGQKQRIAIAR 600 (695)
Q Consensus 546 I~~g~~----------~~~~~ee-----i~~A~~-------~a~l~~fI~~LP~G~dT-~vge--~~LSGGQkQRIaIAR 600 (695)
.+.|.+ ...+-.+ +.++++ .....+.++.+ |+.. ..+. ..||||||||++|||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~--gL~~~~l~~~~~~LSGGekQRv~LAr 858 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDV--GLGYMKLGQPATTLSGGEAQRVKLAA 858 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHT--TCSSSBTTCCGGGCCHHHHHHHHHHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHc--CCCcccccCchhhCCHHHHHHHHHHH
Confidence 000100 0000000 111110 01123344444 3433 3443 389999999999999
Q ss_pred HhhcCC---cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe------eCCeEEEec
Q 005467 601 AILRDP---AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI------DDGRIIEVG 671 (695)
Q Consensus 601 All~~p---~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL------~~G~Ive~G 671 (695)
||+++| ++|||||||++||..+.+.+.+.|+++.+ .|+|||+|||++..++.||+|++| ++|+|++.|
T Consensus 859 aL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~---~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g 935 (972)
T 2r6f_A 859 ELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD---NGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVG 935 (972)
T ss_dssp HHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEEE
T ss_pred HHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEec
Confidence 999875 99999999999999999999999998753 478999999999999899999999 799999999
Q ss_pred cchhhhhcCchhHHH
Q 005467 672 NHAELLHKGRLYAKL 686 (695)
Q Consensus 672 th~eLl~~~g~Y~~l 686 (695)
+++++.+....|...
T Consensus 936 ~~~el~~~~~~~t~~ 950 (972)
T 2r6f_A 936 TPEEVAEVKESHTGR 950 (972)
T ss_dssp SHHHHHTCTTCHHHH
T ss_pred CHHHHHhCchhHHHH
Confidence 999999876555443
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=294.57 Aligned_cols=199 Identities=18% Similarity=0.240 Sum_probs=149.6
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc--------------------------------------CCCce
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE--------------------------------------PSDGQ 508 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~--------------------------------------p~~G~ 508 (695)
+++++||++++| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999987764 45789
Q ss_pred EEEcCccCCcchhHHHHhh-hccccCCceeeeeeccccccccCCcCCC--------------------------------
Q 005467 509 IYIDGFPLTDLDIRWLREK-IGFVGQEPQLLQMDIKSNIMYGCPKDVK-------------------------------- 555 (695)
Q Consensus 509 I~idG~di~~i~~~~lR~~-I~~V~Qd~~LF~~TI~eNI~~g~~~~~~-------------------------------- 555 (695)
+++||.++...+...+++. +++++|+..++..+-.++..+- +....
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~l-d~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLL-DRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHH-HHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 9999999988778888777 7999999887766554443332 11110
Q ss_pred ------------chhHHHHHHH-------------hhHhHhHhcC--CC----------------Cccc---ccccc---
Q 005467 556 ------------NEDIEWAAKQ-------------AYVHEFILSL--PC----------------GYET---LVDDD--- 586 (695)
Q Consensus 556 ------------~eei~~A~~~-------------a~l~~fI~~L--P~----------------G~dT---~vge~--- 586 (695)
++++.+.+.. ..+.+.+..+ |+ |++. .++.+
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 0000000000 0111222222 21 2222 12111
Q ss_pred ------c-cCCccchhHHHHHHhhcCC--cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccC
Q 005467 587 ------L-LSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD 657 (695)
Q Consensus 587 ------~-LSGGQkQRIaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD 657 (695)
. ||||||||++|||+++.+| ++||||||||+||+++...+.+.|.++. +|+|||+|||+++.+..||
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~----~~~~vi~itH~~~~~~~~d 363 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA----DTRQVLVVTHLAQIAARAH 363 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSCHHHHTTCS
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh----CCCEEEEEeCcHHHHhhcC
Confidence 1 7999999999999999999 9999999999999999999999999884 3689999999999998999
Q ss_pred eEEEe----eCCeEEEec
Q 005467 658 RIVVI----DDGRIIEVG 671 (695)
Q Consensus 658 ~IvvL----~~G~Ive~G 671 (695)
+|++| ++|+++...
T Consensus 364 ~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeccCCceEEEE
Confidence 99999 999998653
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-32 Score=291.66 Aligned_cols=221 Identities=14% Similarity=0.158 Sum_probs=163.9
Q ss_pred ehheeecc-eeeecc----ccChhhhhhhhhhhhheeeeeeeccc-chhHHHHhhcchhhHHHhhccCCccccccccccc
Q 005467 370 VMAVLLGG-MSIMIG----QVSPEQLTKYVLYCEWLIYATWRMVD-NLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL 443 (695)
Q Consensus 370 ~~~l~~g~-~~v~~g----~is~G~l~~~~~~~~~l~~~~~~l~~-~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~ 443 (695)
+.+...|+ +....+ .+|.|++.+|+.+...+..+ .+.. ....+..+..+.+|+.++++.++.. ........
T Consensus 56 v~v~~~g~~~~~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~-~~~~~~~i 132 (330)
T 2pt7_A 56 VWVLKNNGEWQPFDVRDRKAFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVN-DETISISI 132 (330)
T ss_dssp EEEEETTSCEEEEECTTCGGGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSS-TTCCEEEE
T ss_pred EEEEECCceEEEecCCcccCCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccC-CCCceEEE
Confidence 34455666 666664 79999999999888777665 3454 4555555667788999998754321 11001111
Q ss_pred -ccccceEE---------EEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC
Q 005467 444 -QRLMGHVQ---------FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (695)
Q Consensus 444 -~~~~~~I~---------f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG 513 (695)
....+.++ |+||+| | .++++++||++++|+.++|+||||||||||+++|+|+++|++|.|+++|
T Consensus 133 r~~~~~~i~l~~l~~~g~~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 133 RIPSKTTYPHSFFEEQGFYNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 206 (330)
T ss_dssp ECCCCCCCCHHHHHHTTTTTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred eCCCCCCCCHHHHHhCCCcCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence 11123466 889999 8 2599999999999999999999999999999999999999999999999
Q ss_pred ccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccc
Q 005467 514 FPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 593 (695)
Q Consensus 514 ~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQk 593 (695)
.+ ++....+|+.+++++ | |||+
T Consensus 207 ~~--e~~~~~~~~~i~~~~---------------------------------------------g-----------gg~~ 228 (330)
T 2pt7_A 207 TE--EIVFKHHKNYTQLFF---------------------------------------------G-----------GNIT 228 (330)
T ss_dssp SC--CCCCSSCSSEEEEEC---------------------------------------------B-----------TTBC
T ss_pred ee--ccccccchhEEEEEe---------------------------------------------C-----------CChh
Confidence 75 222111222222211 1 8999
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeE
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRI 667 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~I 667 (695)
||++|||||.++|++|+|||||+ .++.+.|+++..+ +.|+|+++|++++.+.||||++|++|+.
T Consensus 229 ~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g---~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 229 SADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSG---HKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTT---CCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcC---CCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 99999999999999999999998 2356677766432 3589999999998889999999999853
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=269.67 Aligned_cols=212 Identities=22% Similarity=0.295 Sum_probs=151.0
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh---------------------------
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL--------------------------- 501 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl--------------------------- 501 (695)
+|+++| ..+|. +++++++.+| .++|+||||||||||++.|..+
T Consensus 5 ~L~i~n-fr~~~--------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~ 74 (322)
T 1e69_A 5 KLYLKG-FKSFG--------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPP 74 (322)
T ss_dssp EEEEES-BTTBC--------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCC
T ss_pred EEEEeC-ceeec--------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCC
Confidence 477787 23442 2568888899 9999999999999999999844
Q ss_pred -----------------------hcCCCceEEEcCccCCcchhHHHHhhhccccCCceee-eeeccccccccCCcCC---
Q 005467 502 -----------------------YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDV--- 554 (695)
Q Consensus 502 -----------------------y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF-~~TI~eNI~~g~~~~~--- 554 (695)
+.+.+|++++||.+++..+...+.+.+++.+|+..++ .|+|.+|+.+. +.+-
T Consensus 75 ~~~~~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ 153 (322)
T 1e69_A 75 AGSAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLE 153 (322)
T ss_dssp CSEEEEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------
T ss_pred CceEEEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHH
Confidence 3445689999999987667777888899999998766 89999998765 2110
Q ss_pred ------------CchhHHHHHHHhh------------H-hHhHhcCCCCccccccc--------cccCCccchhHHHHHH
Q 005467 555 ------------KNEDIEWAAKQAY------------V-HEFILSLPCGYETLVDD--------DLLSGGQKQRIAIARA 601 (695)
Q Consensus 555 ------------~~eei~~A~~~a~------------l-~~fI~~LP~G~dT~vge--------~~LSGGQkQRIaIARA 601 (695)
+.+++.+.....- + .+....++.|+++.+++ ..||||||||++||||
T Consensus 154 ld~~~~~~~~~~~y~rv~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~ 233 (322)
T 1e69_A 154 SSKHPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALL 233 (322)
T ss_dssp -------------CHHHHHHHHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHH
Confidence 1111222211110 0 01113456688776542 2799999999999999
Q ss_pred hh----cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeE--EEeeCCeEE-Eeccch
Q 005467 602 IL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI--VVIDDGRII-EVGNHA 674 (695)
Q Consensus 602 ll----~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~I--vvL~~G~Iv-e~Gth~ 674 (695)
|. ++|++||||||||+||+.+.+.+.+.|.+.. +++|+|+|||+.+..+.||++ ++|++|+.. ...+-+
T Consensus 234 l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~----~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 234 FALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS----KHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp HHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT----TTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC-
T ss_pred HHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc----CCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcc
Confidence 96 7899999999999999999999999998873 358999999999888889987 888888653 334444
Q ss_pred h
Q 005467 675 E 675 (695)
Q Consensus 675 e 675 (695)
|
T Consensus 310 ~ 310 (322)
T 1e69_A 310 K 310 (322)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-30 Score=255.59 Aligned_cols=160 Identities=18% Similarity=0.182 Sum_probs=104.0
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
+.+|+|| ++||++||+||||||||||+++|+|+ +|++|+|. +.++.. +...+|+.||||+|++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 3689995 89999999999999999999999999 99999994 333321 2234678899999998 78
Q ss_pred cc-cccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccc
Q 005467 545 NI-MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (695)
Q Consensus 545 NI-~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE 623 (695)
|+ .++. +.. +.+........+.+.++. |+ |||||++|||||+.+|++||||||||+ +.
T Consensus 78 nl~~~~~-~~~--~~~~~~~~~~~~~~~l~~---gl-----------Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 78 KIDPYLR-PLH--DALRDMVEPEVIPKLMEA---GI-----------VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp --CTTTH-HHH--HHHTTTSCTTHHHHHHHT---TS-----------EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred HHHHHHH-HHH--HHHHHhccHHHHHHHHHh---CC-----------chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 88 5541 100 000000001122333332 22 999999999999999999999999999 88
Q ss_pred hhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEE
Q 005467 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRII 668 (695)
Q Consensus 624 ~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Iv 668 (695)
..+.+.|.++ + +|+|+| |||+++.+. ++...+||...
T Consensus 137 ~~l~~~l~~l-~---~g~tii-vtHd~~~~~---~~~~~~~G~~~ 173 (208)
T 3b85_A 137 AQMKMFLTRL-G---FGSKMV-VTGDITQVD---LPGGQKSGLRL 173 (208)
T ss_dssp HHHHHHHTTB-C---TTCEEE-EEEC---------------CCHH
T ss_pred HHHHHHHHHh-c---CCCEEE-EECCHHHHh---CcCCCCCcHHH
Confidence 8888888876 2 368999 999988654 45556777543
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-30 Score=262.45 Aligned_cols=166 Identities=17% Similarity=0.189 Sum_probs=123.0
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh-HHHHhhhccccCCc---------
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKIGFVGQEP--------- 535 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~-~~lR~~I~~V~Qd~--------- 535 (695)
.-|+||||+|++|+++||+||||||||||+++|+|++ | |+|.+ |.++.+.+. ...++.++|++|++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 6 99999 887754432 23567899999876
Q ss_pred --eeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH-----HHHhhcCCcE
Q 005467 536 --QLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI-----ARAILRDPAI 608 (695)
Q Consensus 536 --~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI-----ARAll~~p~I 608 (695)
+++.+++.+| .||. + ++++.++++... ...+ +..||||||||++| ||+++++|++
T Consensus 87 ~~~l~~~~~~~~-~~g~-~---~~~i~~~l~~~~------------~~il-~~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT-L---KSEYDKAKEQNK------------ICLF-EMNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp TCEEEEEEETTE-EEEE-E---HHHHHHHHHTTC------------EEEE-EECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred cchhhhhhcccc-cCCC-c---HHHHHHHHhCCC------------cEEE-EecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 4555677777 5562 2 344555554321 1111 25799999999999 9999999999
Q ss_pred EEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 609 LLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 609 LILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
++|||||+++|.++|..|++.+.+..+ ++| ++| +..||.|+|+++
T Consensus 149 ~~Lde~~~~~d~~~~~~i~~~l~~~~~----~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 149 DVLLSRLLTRNTENQEQIQKRMEQLNI----ELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHHH----HHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHH----HHH---hhc----ccCCCEEEECCC
Confidence 999999999999999999999988754 356 678 688999999875
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-27 Score=229.63 Aligned_cols=151 Identities=19% Similarity=0.216 Sum_probs=107.4
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccccccc
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 549 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g 549 (695)
||||++++||+++|+||||||||||++++.+ |... ++.+.+| |+++|++. +..+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~--------~~~~~ 55 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDEN--------DQTVT 55 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTT--------CGGGH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCccc--------chhhH
Confidence 6899999999999999999999999999542 2222 2333444 77888752 11111
Q ss_pred CCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc-ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccc-----
Q 005467 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD-LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE----- 623 (695)
Q Consensus 550 ~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~-~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE----- 623 (695)
....+.+... ....+..|+.+.+... ..|||||||++||||+..+|++|+|||||++||+.++
T Consensus 56 -------~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~ 124 (171)
T 4gp7_A 56 -------GAAFDVLHYI----VSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDR 124 (171)
T ss_dssp -------HHHHHHHHHH----HHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSC
T ss_pred -------HHHHHHHHHH----HHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCC
Confidence 1111111110 0112345777666653 6799999999999999999999999999999999955
Q ss_pred -----------hhhhhHHHhhhccccCcceEEEEeeecccccccCeE
Q 005467 624 -----------HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 659 (695)
Q Consensus 624 -----------~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~I 659 (695)
+.+.+.+.++.+ +|.|+|+|||+++.+..++++
T Consensus 125 ~~~~~vi~~~~~~l~~~l~~l~~---~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 125 QVEEYVIRKHTQQMKKSIKGLQR---EGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp CCCHHHHHHHHHHHHHHSTTHHH---HTCSEEEEECSHHHHHHEEEE
T ss_pred CCCHHHHHHHHHHhhhhhhhHHh---cCCcEEEEeCCHHHhhhhhhc
Confidence 666666666532 378999999999998877765
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-28 Score=269.81 Aligned_cols=199 Identities=18% Similarity=0.126 Sum_probs=157.5
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCc---cCCcch----
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGF---PLTDLD---- 520 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~---di~~i~---- 520 (695)
+.++++||++.|+. +..+|+++ |+|++||+++|+||||||||||+++|+|+++|++|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 35899999999963 24699999 999999999999999999999999999999999999999998 565543
Q ss_pred -hHHHHhhhccccCC--ceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHH
Q 005467 521 -IRWLREKIGFVGQE--PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIA 597 (695)
Q Consensus 521 -~~~lR~~I~~V~Qd--~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIa 597 (695)
...+++.|+||+|+ +.....|+.+|+.+.. +.... +...+.+++++ -.+||||| ||++
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a-------e~~~~-~~~~v~~~ld~----------l~~lS~g~-qrvs 267 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA-------EDFRD-RGQHVLLIMDS----------LTRYAMAQ-REIA 267 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH-------HHHHT-TTCEEEEEEEC----------HHHHHHHH-HHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH-------HHHHh-CCCCHHHHHHh----------HHHHHHHH-HHHH
Confidence 35688899999995 3344568888877641 11100 00111111110 13899999 9999
Q ss_pred HHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccc-cCcc-----eEEEEeeecccccccCeEEEeeCCeEEEec
Q 005467 598 IARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDC-KTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 598 IARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~-~~~~-----TvIiIaHrlsti~~aD~IvvL~~G~Ive~G 671 (695)
|| +++|++ |++||+.++..+.+.++++.+.. ..|+ |++++||+++ ...||++++|.+|+|+..|
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECH
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeC
Confidence 99 899998 99999999999999998875310 1254 9999999999 7789999999999999999
Q ss_pred cchhhhh
Q 005467 672 NHAELLH 678 (695)
Q Consensus 672 th~eLl~ 678 (695)
+++++..
T Consensus 338 ~~~~~~~ 344 (438)
T 2dpy_A 338 RLAEAGH 344 (438)
T ss_dssp HHHHTTC
T ss_pred CHHHccC
Confidence 9998864
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-26 Score=227.43 Aligned_cols=145 Identities=18% Similarity=0.214 Sum_probs=107.1
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhH
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 559 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei 559 (695)
+++|+||||||||||+++|+|++. |.++|.+..+......++++|+++|++ +..+|+ ++. ....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~-~~~~---- 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSS-KFFT---- 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEE-TTCC----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHh-hcCC----
Confidence 689999999999999999999995 778887765543335678999999987 455665 221 1100
Q ss_pred HHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHH-----hhcCCcEEEEec--cccccCcccchhhhhHH
Q 005467 560 EWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARA-----ILRDPAILLLDE--ATSALDSESEHYVKGVL 630 (695)
Q Consensus 560 ~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARA-----ll~~p~ILILDE--aTSaLD~~tE~~I~~~L 630 (695)
+ +..++. .+||||||||++|||| ++.+|++||||| ||++||+.+.+.+.+.+
T Consensus 66 ----------------~---~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l 126 (178)
T 1ye8_A 66 ----------------S---KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM 126 (178)
T ss_dssp ----------------C---SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH
T ss_pred ----------------c---cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHH
Confidence 0 123444 3799999999999996 999999999999 99999999998888877
Q ss_pred HhhhccccCcceEEEEee---ecccccc-cCeEEEeeCCeEEE
Q 005467 631 HALRNDCKTKRTVIVIAH---RLSTIKA-VDRIVVIDDGRIIE 669 (695)
Q Consensus 631 ~~~~~~~~~~~TvIiIaH---rlsti~~-aD~IvvL~~G~Ive 669 (695)
++ .+.|+|+++| +...+.. ||+ ++|+|++
T Consensus 127 ~~------~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 127 HD------PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp TC------TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred hc------CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 65 2467999997 4444443 665 6678776
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-25 Score=244.31 Aligned_cols=80 Identities=29% Similarity=0.456 Sum_probs=74.4
Q ss_pred ccCCccchhHHHHHHhh------cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEE
Q 005467 587 LLSGGQKQRIAIARAIL------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 660 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll------~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~Iv 660 (695)
.||||||||++||||+. .+|++|||||||++||+++...+.+.|.++.+ .|+|+|+|||+++..+.||+|+
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~---~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER---LNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG---SSSEEEEEESCHHHHTTCSCEE
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh---CCCEEEEEecchHHHHhCCEEE
Confidence 79999999999999999 79999999999999999999999999998753 4799999999999988899999
Q ss_pred EeeCCeEEE
Q 005467 661 VIDDGRIIE 669 (695)
Q Consensus 661 vL~~G~Ive 669 (695)
+|++|+|++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999975
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-27 Score=256.63 Aligned_cols=176 Identities=19% Similarity=0.194 Sum_probs=140.6
Q ss_pred ceeeeeeeEeecCc--------------------EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH
Q 005467 466 PILNHVCLTIEANE--------------------VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 466 ~vL~~isl~I~~Ge--------------------~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR 525 (695)
.+|+||||+|++|+ .+||+||||||||||+|+|+|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999997653 1
Q ss_pred hhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCc--cchhHHHHHHhh
Q 005467 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGG--QKQRIAIARAIL 603 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGG--QkQRIaIARAll 603 (695)
.++++|++...+.|+.||+.++. + ++++.+.++..++.++ +..+ .|||| ||||++||||+.
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~-~---~~~~~~~L~~~~L~~~--------~~~~---~lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGS-T---NFPPDTYLEKMKFYEY--------DFFI---IISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGG-S---SCCHHHHHHHTTGGGC--------SEEE---EEESSCCCHHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccc-h---HHHHHHHHHHcCCCcc--------CCeE---EeCCCCccHHHHHHHHHHH
Confidence 28899997655789999999883 2 4567777777775432 2222 29999 999999999999
Q ss_pred c----------CCcEEEEeccccccCcccchhhhhHHHhhhc----c--ccCcceEEEEeeeccc--ccc-cCeEE-Eee
Q 005467 604 R----------DPAILLLDEATSALDSESEHYVKGVLHALRN----D--CKTKRTVIVIAHRLST--IKA-VDRIV-VID 663 (695)
Q Consensus 604 ~----------~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~----~--~~~~~TvIiIaHrlst--i~~-aD~Iv-vL~ 663 (695)
+ +|++++|||||++||+.+++.+.+.+++... . ....+++++-||.++. ++. ||+|. .|.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 9 9999999999999999999999999888731 1 0123567788999886 654 88775 444
Q ss_pred CC
Q 005467 664 DG 665 (695)
Q Consensus 664 ~G 665 (695)
.|
T Consensus 253 eg 254 (413)
T 1tq4_A 253 IY 254 (413)
T ss_dssp GG
T ss_pred cc
Confidence 44
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-26 Score=222.98 Aligned_cols=111 Identities=16% Similarity=0.214 Sum_probs=90.7
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCC---CceEEEcCccCCcch---hHHHH-hhhc----cccCCceeeeeecccccc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPS---DGQIYIDGFPLTDLD---IRWLR-EKIG----FVGQEPQLLQMDIKSNIM 547 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~---~G~I~idG~di~~i~---~~~lR-~~I~----~V~Qd~~LF~~TI~eNI~ 547 (695)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+++| +++| +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999998887 77898 5899 899999988 322
Q ss_pred ccCCcCCCchhHHHHHHHhhHhHhHhc-CCCCccccccccccCCccchhHHHHHHhhcCCcEE
Q 005467 548 YGCPKDVKNEDIEWAAKQAYVHEFILS-LPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (695)
Q Consensus 548 ~g~~~~~~~eei~~A~~~a~l~~fI~~-LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~IL 609 (695)
+ ++++ .+++++++.. +| ||||.++|+ |||||||||+||||++++|++.
T Consensus 77 -~------~~~~-----~a~l~~~i~~~l~-g~dt~i~Eg-lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V------SEEE-----GNDLDWIYERYLS-DYDLVITEG-FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C------CHHH-----HTCHHHHHHHHTT-TCSEEEEES-CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C------Chhh-----hhCHHHHHHhhCC-CCCEEEECC-cCCCCCcEEEEEecccCCCccC
Confidence 1 1222 7899999999 99 999999997 9999999999999999999874
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.6e-27 Score=248.49 Aligned_cols=204 Identities=17% Similarity=0.179 Sum_probs=142.8
Q ss_pred chhhHHHhhccCCcccccccccccccccceEEEEEEeeecCCCCccceeeeeeeE-----------------------ee
Q 005467 420 ATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLT-----------------------IE 476 (695)
Q Consensus 420 a~~rl~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~-----------------------I~ 476 (695)
+..++.+.+..+++..+ .......++.|+++||++.|. |+++++++. ++
T Consensus 17 ~~~~l~~~~~~~~~~~~---~~~l~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (312)
T 3aez_A 17 QWRALRMSTPLALTEEE---LVGLRGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRP 88 (312)
T ss_dssp HHHGGGTTCCCCCCHHH---HHTTCCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSC
T ss_pred HHHHHHhcCCCCCCHHH---HHhccCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCC
Confidence 34455555554443221 122333456799999999993 577777765 89
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN 556 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~ 556 (695)
+|+++||+||||||||||+++|.|+++|.+|+ +++++|+||++++..|++||+.+....+..+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~ 151 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPE 151 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGG
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCCh
Confidence 99999999999999999999999999998764 4689999999999889999997541111111
Q ss_pred hhHHHHHHHhhHhHhHhcCCCCcc-ccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhc
Q 005467 557 EDIEWAAKQAYVHEFILSLPCGYE-TLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRN 635 (695)
Q Consensus 557 eei~~A~~~a~l~~fI~~LP~G~d-T~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~ 635 (695)
.. +...+.++++.+..|+. ..+ ..|||||+||+++|||++.+|+|||||||++.+|+... .+.+..
T Consensus 152 ~~-----d~~~~~~~L~~l~~~~~~~~~--~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~-----~l~~~~- 218 (312)
T 3aez_A 152 SY-----NRRALMRFVTSVKSGSDYACA--PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTL-----MVSDLF- 218 (312)
T ss_dssp GB-----CHHHHHHHHHHHHTTCSCEEE--EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSC-----CGGGGC-
T ss_pred HH-----HHHHHHHHHHHhCCCcccCCc--ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchH-----HHHHhc-
Confidence 11 11223344444444443 222 37999999999999999999999999999999997432 233321
Q ss_pred cccCcceEEEEeeecccc--cccCeEEEeeCCe
Q 005467 636 DCKTKRTVIVIAHRLSTI--KAVDRIVVIDDGR 666 (695)
Q Consensus 636 ~~~~~~TvIiIaHrlsti--~~aD~IvvL~~G~ 666 (695)
..+|+|+|..+.. +..+|.+.+.+|+
T Consensus 219 -----D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 219 -----DFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp -----SEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred -----CcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 2558888877664 2367766665543
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-27 Score=247.36 Aligned_cols=182 Identities=17% Similarity=0.235 Sum_probs=146.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC-CceEEEcCccCCcchhHHHHhhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-~G~I~idG~di~~i~~~~lR~~I 528 (695)
++++|++|. ++|+|+| +++|++++|+|||||||||++++|+|+|+|+ +|+|.++|.++..+. ++.+
T Consensus 6 ~~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~ 72 (261)
T 2eyu_A 6 PEFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKK 72 (261)
T ss_dssp CCGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSS
T ss_pred CChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcc
Confidence 456666652 4899999 9999999999999999999999999999998 999999999886543 3456
Q ss_pred ccccC-----CceeeeeeccccccccCCcCC-------CchhHHHHHHHhhH-----------------hHhH-------
Q 005467 529 GFVGQ-----EPQLLQMDIKSNIMYGCPKDV-------KNEDIEWAAKQAYV-----------------HEFI------- 572 (695)
Q Consensus 529 ~~V~Q-----d~~LF~~TI~eNI~~g~~~~~-------~~eei~~A~~~a~l-----------------~~fI------- 572 (695)
++++| ++..|..+|+.+++.. |++ +.+.++.+++.+.. +..+
T Consensus 73 ~~v~q~~~gl~~~~l~~~la~aL~~~--p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~ 150 (261)
T 2eyu_A 73 SIVNQREVGEDTKSFADALRAALRED--PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQ 150 (261)
T ss_dssp SEEEEEEBTTTBSCHHHHHHHHHHHC--CSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGG
T ss_pred eeeeHHHhCCCHHHHHHHHHHHHhhC--CCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccc
Confidence 77888 6666788899998875 344 66666666665532 1111
Q ss_pred -----hcCCCCcccccccc--ccCCccchhHHHHHHhhcCCcE--EEEeccccccCcc---------cchhhhhHHHhhh
Q 005467 573 -----LSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAI--LLLDEATSALDSE---------SEHYVKGVLHALR 634 (695)
Q Consensus 573 -----~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~I--LILDEaTSaLD~~---------tE~~I~~~L~~~~ 634 (695)
..+++++++.|+++ ++||| ||+++||+++.||+| +|+||+||++|.. +|..++++++.+.
T Consensus 151 ~~~~~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 228 (261)
T 2eyu_A 151 QEQVRIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK 228 (261)
T ss_dssp HHHHHHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHH
T ss_pred cchHHHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH
Confidence 13567899999986 88999 999999999999999 9999999999975 3677888888874
Q ss_pred ccccCcceEEEEeeeccc
Q 005467 635 NDCKTKRTVIVIAHRLST 652 (695)
Q Consensus 635 ~~~~~~~TvIiIaHrlst 652 (695)
+|+|.+.++||++.
T Consensus 229 ----~g~t~~~~a~r~~~ 242 (261)
T 2eyu_A 229 ----QGLITLEDAMEASP 242 (261)
T ss_dssp ----TTSSCHHHHHHHCS
T ss_pred ----cCCCCHHHHHHHhC
Confidence 56999999999984
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=7.5e-26 Score=224.88 Aligned_cols=169 Identities=19% Similarity=0.260 Sum_probs=133.0
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhc-------------CCCceEEEcCccCCcchhHHHHhhhccccCCceeeeee
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE-------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD 541 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-------------p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~T 541 (695)
+++|++++|+||||||||||+++|+|+|+ |..|+ +||.++..++.+.+|+.+ +|+.++|+++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999997 88998 599999999999999886 7999999999
Q ss_pred ccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH-HhhcCCcEEEEeccccccCc
Q 005467 542 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR-AILRDPAILLLDEATSALDS 620 (695)
Q Consensus 542 I~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR-All~~p~ILILDEaTSaLD~ 620 (695)
+.+|+ ||. ++++++++++.+.+.-+ +-.|+|+++... + ++ .|| +++++|++++|||+|+++|.
T Consensus 76 ~~~n~-~g~----~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~--------~-~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 76 FSGNL-YGT----SKEAVRAVQAMNRICVL-DVDLQGVRSIKK--------T-DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp ETTEE-EEE----EHHHHHHHHHTTCEEEE-ECCHHHHHHHTT--------S-SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred ecCcc-CCC----CHHHHHHHHHcCCcEEE-ECCHHHHHHHHh--------c-CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 99998 882 56788888876543222 224667766532 1 33 677 89999999999999999999
Q ss_pred ccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhh
Q 005467 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 621 ~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
++|+.|++.|.+..++ +.++| ++ ..||+|+|+++ ...+.+||.+
T Consensus 140 ~~e~~i~~~l~~~~~~-------~~~a~--~~-~~~D~iivnd~----le~a~~~l~~ 183 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD-------MESSK--EP-GLFDLVIINDD----LDKAYATLKQ 183 (198)
T ss_dssp SCHHHHHHHHHHHHHH-------TTGGG--ST-TTCSEEEECSS----HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-------HHHhh--cc-CCceEEEECCC----HHHHHHHHHH
Confidence 9999999999887432 45678 55 88999999985 2344555543
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.7e-27 Score=253.15 Aligned_cols=224 Identities=12% Similarity=0.086 Sum_probs=167.5
Q ss_pred eehheeecceeeec-cccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCccccccccccc-ccc
Q 005467 369 QVMAVLLGGMSIMI-GQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKL-QRL 446 (695)
Q Consensus 369 ~~~~l~~g~~~v~~-g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~~~~~~~~~~~-~~~ 446 (695)
.+.+.+.|++.+.. |.+|.|++.+|+.+...+..+ .+......+..+..+.+|+.+++ +|........... ...
T Consensus 48 ~v~v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~ 123 (361)
T 2gza_A 48 EVFCERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPS 123 (361)
T ss_dssp EEEEEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCC
T ss_pred EEEEEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecC
Confidence 45567788888886 899999999999998887766 45555556666677889999988 3332211101110 011
Q ss_pred cceE---------EEEEEeee---cCCCCcccee---------eeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC
Q 005467 447 MGHV---------QFVNISFH---YPSRPTVPIL---------NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (695)
Q Consensus 447 ~~~I---------~f~nVsF~---Y~~~~~~~vL---------~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~ 505 (695)
.+.+ +|+||+|+ |++. +.++| +++||+|++|+.++|+||||||||||+++|+|+|+|+
T Consensus 124 ~~~itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~ 202 (361)
T 2gza_A 124 FTRRTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD 202 (361)
T ss_dssp CCCCCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 2345 89999999 9642 23566 9999999999999999999999999999999999999
Q ss_pred CceEEEcCccCCcchhHHHHhhhcccc-CCcee---eeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccc
Q 005467 506 DGQIYIDGFPLTDLDIRWLREKIGFVG-QEPQL---LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYET 581 (695)
Q Consensus 506 ~G~I~idG~di~~i~~~~lR~~I~~V~-Qd~~L---F~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT 581 (695)
+|.|+++|. .++....+|+.+++|+ |++.+ +..|+++||+++. ....+..+..+++.+.+++++..+|.|++|
T Consensus 203 ~g~I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l-~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~ 279 (361)
T 2gza_A 203 QRLITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCL-RMKPTRILLAELRGGEAYDFINVAASGHGG 279 (361)
T ss_dssp SCEEEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHT-TSCCSEEEESCCCSTHHHHHHHHHHTTCCS
T ss_pred ceEEEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHH-hcCCCEEEEcCchHHHHHHHHHHHhcCCCe
Confidence 999999985 4566556788999999 99886 8899999999884 344455555566778889999999999999
Q ss_pred ccccc--ccCCccchhHHHHH
Q 005467 582 LVDDD--LLSGGQKQRIAIAR 600 (695)
Q Consensus 582 ~vge~--~LSGGQkQRIaIAR 600 (695)
.+++. +-+.+..+|++...
T Consensus 280 ~l~t~H~~~~~~~~~Rl~~l~ 300 (361)
T 2gza_A 280 SITSCHAGSCELTFERLALMV 300 (361)
T ss_dssp CEEEEECSSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 99983 55778899998775
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-24 Score=226.45 Aligned_cols=151 Identities=18% Similarity=0.200 Sum_probs=96.9
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeee-eeccccccccCCcCCCchh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNED 558 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~ee 558 (695)
++|||||||||||||+|+|+|++.|++|+|.++|.++.. ...++.+++++|++.++. -||.||+.||. ....++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~--~~~~~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGD--QINNEN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--C--CSBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhh--hcccHH
Confidence 589999999999999999999999999999999988743 344678999999998875 49999999994 222233
Q ss_pred HHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhcccc
Q 005467 559 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638 (695)
Q Consensus 559 i~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~ 638 (695)
.++.+......++...++ ..||||||||+++|||+.. +++|||||++||+.. .. .++.+.+
T Consensus 79 ~~~~i~~~~~~~~~~~~~---------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~---~l~~L~~--- 139 (270)
T 3sop_A 79 CWEPIEKYINEQYEKFLK---------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LE---FMKHLSK--- 139 (270)
T ss_dssp CSHHHHHHHHHHHHHHHH---------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HH---HHHHHHT---
T ss_pred HHHHHHHHHHHHHHhhhH---------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HH---HHHHHHh---
Confidence 333333332233332222 2699999999999999775 999999999999876 33 3333322
Q ss_pred CcceEEEEeeecccccc
Q 005467 639 TKRTVIVIAHRLSTIKA 655 (695)
Q Consensus 639 ~~~TvIiIaHrlsti~~ 655 (695)
..++|+|.|+..++..
T Consensus 140 -~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 140 -VVNIIPVIAKADTMTL 155 (270)
T ss_dssp -TSEEEEEETTGGGSCH
T ss_pred -cCcEEEEEeccccCCH
Confidence 2799999998877643
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-23 Score=244.33 Aligned_cols=91 Identities=25% Similarity=0.428 Sum_probs=85.1
Q ss_pred cccCCccchhHHHHHHhhcCC--cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe-
Q 005467 586 DLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI- 662 (695)
Q Consensus 586 ~~LSGGQkQRIaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL- 662 (695)
..|||||||||+|||||.++| ++|||||||++||++..+.+.+.|++++. .|.|||+|+||+..++.||+|++|
T Consensus 378 ~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~---~G~TVIvVeHdl~~l~~aD~ii~lg 454 (842)
T 2vf7_A 378 PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR---GGNSLFVVEHDLDVIRRADWLVDVG 454 (842)
T ss_dssp GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT---TTCEEEEECCCHHHHTTCSEEEEEC
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH---cCCEEEEEcCCHHHHHhCCEEEEeC
Confidence 389999999999999999999 59999999999999999999999998853 478999999999999999999999
Q ss_pred -----eCCeEEEeccchhhhhc
Q 005467 663 -----DDGRIIEVGNHAELLHK 679 (695)
Q Consensus 663 -----~~G~Ive~Gth~eLl~~ 679 (695)
++|+++..|+++++.+.
T Consensus 455 pgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 455 PEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp SSSGGGCCSEEEEECGGGGGGC
T ss_pred CCcccCCCEEEEecCHHHHHhc
Confidence 79999999999999875
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-24 Score=230.22 Aligned_cols=174 Identities=15% Similarity=0.167 Sum_probs=128.1
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch----hHHH--HhhhccccCCce-eee-
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL--REKIGFVGQEPQ-LLQ- 539 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~----~~~l--R~~I~~V~Qd~~-LF~- 539 (695)
++++||++++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... ...| |..|++|+|++. ++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 45789999999999999999999999999999999999999999999987653 2334 457999999987 664
Q ss_pred eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCc--EEEEeccc
Q 005467 540 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA--ILLLDEAT 615 (695)
Q Consensus 540 ~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~--ILILDEaT 615 (695)
.|++||+.++...+. +. ..++.. |....... ..|| |||++||||+..+|+ +|+|| ||
T Consensus 170 ~~v~e~l~~~~~~~~-d~------------~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pt 230 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGY-DV------------VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GN 230 (302)
T ss_dssp HHHHHHHHHHHHTTC-SE------------EEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GG
T ss_pred HHHHHHHHHHHHcCC-cc------------hHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CC
Confidence 589999987621111 11 112211 22211111 2689 999999999999999 99999 99
Q ss_pred cccCcccchhhhhHHHhhhccccCcceEEEEee---------eccccc-ccCeEEEeeCCeEE
Q 005467 616 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAH---------RLSTIK-AVDRIVVIDDGRII 668 (695)
Q Consensus 616 SaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaH---------rlsti~-~aD~IvvL~~G~Iv 668 (695)
+++|+.+.. +.+.+ ..+.|+|++|| .++.+. ..+.|.++..|+.+
T Consensus 231 sglD~~~~~---~~~~~-----~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 231 TGLNMLPQA---REFNE-----VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGGHHHH---HHHHH-----HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCcCHHHHH---HHHHH-----hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 999997542 22222 13689999999 444443 36789999999653
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-26 Score=247.61 Aligned_cols=173 Identities=17% Similarity=0.229 Sum_probs=144.6
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC-CceEEEcCccCCcchhHHHHhhhccccC-----Cceeee
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKIGFVGQ-----EPQLLQ 539 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-~G~I~idG~di~~i~~~~lR~~I~~V~Q-----d~~LF~ 539 (695)
++|++++ +++|+.++|+|||||||||++++|+|+|+|+ +|+|.++|.++. + .+++.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4677766 8999999999999999999999999999998 899988887764 2 35778999999 899999
Q ss_pred eeccccccccCCcCC-------CchhHHHHHHHhhHh-----------------HhH------------hcCCCCccccc
Q 005467 540 MDIKSNIMYGCPKDV-------KNEDIEWAAKQAYVH-----------------EFI------------LSLPCGYETLV 583 (695)
Q Consensus 540 ~TI~eNI~~g~~~~~-------~~eei~~A~~~a~l~-----------------~fI------------~~LP~G~dT~v 583 (695)
++|++|+++. |++ +++.++.+++.++.. ..+ ..+|+++++.|
T Consensus 200 ~~l~~~L~~~--pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv 277 (372)
T 2ewv_A 200 DALRAALRED--PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGII 277 (372)
T ss_dssp HHHHHHTTSC--CSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEE
T ss_pred HHHHHHhhhC--cCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEE
Confidence 9999999986 455 677788888877542 111 12467899999
Q ss_pred ccc--ccCCccchhHHHHHHhhcCCcE--EEEeccccccCcc----c-----chhhhhHHHhhhccccCcceEEEEeeec
Q 005467 584 DDD--LLSGGQKQRIAIARAILRDPAI--LLLDEATSALDSE----S-----EHYVKGVLHALRNDCKTKRTVIVIAHRL 650 (695)
Q Consensus 584 ge~--~LSGGQkQRIaIARAll~~p~I--LILDEaTSaLD~~----t-----E~~I~~~L~~~~~~~~~~~TvIiIaHrl 650 (695)
+++ ++||| ||+++||+++.+|+| +|+||+||+||.. + +..++++++.+ .+|+|++.++||+
T Consensus 278 ~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~----~~g~t~~~~a~r~ 351 (372)
T 2ewv_A 278 SQRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLY----KQGLITLEDAMEA 351 (372)
T ss_dssp EEEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTT----TTSSSCTTTTTSS
T ss_pred EEEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHH----HCCCCCHHHHHHH
Confidence 985 78999 899999999999999 9999999999964 3 66788888877 4579999999999
Q ss_pred cc
Q 005467 651 ST 652 (695)
Q Consensus 651 st 652 (695)
+.
T Consensus 352 ~~ 353 (372)
T 2ewv_A 352 SP 353 (372)
T ss_dssp CS
T ss_pred cC
Confidence 85
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.6e-24 Score=227.91 Aligned_cols=172 Identities=15% Similarity=0.171 Sum_probs=128.5
Q ss_pred eeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch----hHHH--HhhhccccCCce-ee-ee
Q 005467 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL--REKIGFVGQEPQ-LL-QM 540 (695)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~----~~~l--R~~I~~V~Qd~~-LF-~~ 540 (695)
+++||++++|++++|||||||||||+++.|+|+++|++|+|.++|.|+.... ...| |..|++|+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4689999999999999999999999999999999999999999999987653 2233 467999999987 55 46
Q ss_pred eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCc--EEEEecccc
Q 005467 541 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPA--ILLLDEATS 616 (695)
Q Consensus 541 TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~--ILILDEaTS 616 (695)
|++|||.++..... +. ..++. -|....... ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 228 tv~e~l~~~~~~~~-d~------------~lldt--~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptt 288 (359)
T 2og2_A 228 VLSKAVKRGKEEGY-DV------------VLCDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 288 (359)
T ss_dssp HHHHHHHHHHHTTC-SE------------EEEEC--CCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGG
T ss_pred hHHHHHHHHHhCCC-HH------------HHHHh--cCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCC
Confidence 89999987621111 11 11221 122211111 2689 999999999999999 99999 999
Q ss_pred ccCcccchhhhhHHHhhhccccCcceEEEEee---------eccccc-ccCeEEEeeCCeE
Q 005467 617 ALDSESEHYVKGVLHALRNDCKTKRTVIVIAH---------RLSTIK-AVDRIVVIDDGRI 667 (695)
Q Consensus 617 aLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaH---------rlsti~-~aD~IvvL~~G~I 667 (695)
++|+.+.. +.+.+ ..+.|+|++|| .++.+. ..+.|..+..|+.
T Consensus 289 glD~~~~~---~~~~~-----~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 289 GLNMLPQA---REFNE-----VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGHHHH---HHHHH-----HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCHHHHH---HHHHH-----hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99997653 22322 13689999999 445543 3678999999964
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-24 Score=216.30 Aligned_cols=171 Identities=15% Similarity=0.103 Sum_probs=109.9
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh-HHHHhhhccccCCceeee-eec
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI-RWLREKIGFVGQEPQLLQ-MDI 542 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~-~~lR~~I~~V~Qd~~LF~-~TI 542 (695)
.++++| .+|++||++||+||||||||||+++|+|+++ +|.+++ ++...+. ...++.++|++|++.+|. .|+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECC-CEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcc-cccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 479999 7999999999999999999999999999996 355543 2211111 223678999999988775 356
Q ss_pred cccccccC-------CcCCCchhHHHH----------HHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 543 KSNIMYGC-------PKDVKNEDIEWA----------AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 543 ~eNI~~g~-------~~~~~~eei~~A----------~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
.+|+.... ....+.+++.+. ++..++.++....|. .|| ||+.+
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~---------~lS-----------~l~~~ 141 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE---------AVT-----------VFLAP 141 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT---------SEE-----------EEEEC
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC---------cEE-----------EEEEC
Confidence 66653210 001122333332 334455544444443 345 99999
Q ss_pred CcEEEEecccccc----CcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeC
Q 005467 606 PAILLLDEATSAL----DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDD 664 (695)
Q Consensus 606 p~ILILDEaTSaL----D~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~ 664 (695)
|++++|||||+++ |+.+.+.+.+.+.++.+ ..+.|+|+|||+++.+. .||+|++|.+
T Consensus 142 p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~--~~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 142 PSWQDLQARLIGRGTETADVIQRRLDTARIELAA--QGDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp SCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHG--GGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh--hccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 9999999999998 45577788888777743 24689999999999886 4999999853
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-22 Score=214.60 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=76.1
Q ss_pred ccCCccchhHHHHHHhh---------cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccC
Q 005467 587 LLSGGQKQRIAIARAIL---------RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVD 657 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll---------~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD 657 (695)
.||||||||++|||+|. .+|+||+||||||+||+...+.+.+.+.+. +.|+|++|| ++. .||
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~------~qt~i~~th-~~~--~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV------PQAIVTGTE-LAP--GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS------SEEEEEESS-CCT--TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc------CcEEEEEEe-ccc--cCC
Confidence 59999999999999999 899999999999999999999999998775 169999999 554 899
Q ss_pred eEEEeeCCeEEEeccchhhhh
Q 005467 658 RIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 658 ~IvvL~~G~Ive~Gth~eLl~ 678 (695)
++++|++|+|++.|+++++.+
T Consensus 336 ~i~~l~~G~i~~~g~~~~~~~ 356 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQAE 356 (359)
T ss_dssp EEEEEETTEEEECCCTTTSCT
T ss_pred EEEEEECCEEEecCCHHHHhc
Confidence 999999999999999999843
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-23 Score=223.80 Aligned_cols=201 Identities=16% Similarity=0.146 Sum_probs=152.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
-++.+||++.|+. +..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.++|.+. .+.++.+
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~-----~ev~~~i 116 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERG-----REVNEFL 116 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH-----HHHHHHH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccH-----HHHHHHH
Confidence 4789999999973 24699999 99999999999999999999999999999999999999999763 3445556
Q ss_pred ccccCCceeeeeeccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCccccc--cc-cccCCccchhHHHHHHhhc
Q 005467 529 GFVGQEPQLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYETLV--DD-DLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 529 ~~V~Qd~~LF~~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~v--ge-~~LSGGQkQRIaIARAll~ 604 (695)
++ .++. .+ +..+.+... +....+++..+.....+.++... .|.+..+ .. .+||+|| ||+++| +.
T Consensus 117 ~~-~~~~-~~----~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la---l~ 184 (347)
T 2obl_A 117 AL-LPQS-TL----SKCVLVVTTSDRPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA---SG 184 (347)
T ss_dssp TT-SCHH-HH----TTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---TT
T ss_pred Hh-hhhh-hh----hceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---cC
Confidence 65 2222 11 122222210 11224566666666667666544 3554432 12 3899999 999999 68
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcc-----eEEEEeeecccccccCeEEEeeCCeEEEeccchhhh
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKR-----TVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~-----TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
+|++ |+++|+.....+.+.+++..+. ..|. |++++||+++ -.-||++++|.+|+|+..|+.+|+.
T Consensus 185 ~p~~------t~Gldp~~~~~l~~ller~~~~-~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 185 EPDV------RGGFPPSVFSSLPKLLERAGPA-PKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp CCCC------BTTBCHHHHHHHHHHHTTCEEC-SSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTTT
T ss_pred CCCc------ccCCCHHHHHHHHHHHHHHhCC-CCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHcC
Confidence 8888 9999999999999999887541 2367 9999999999 5669999999999999999988874
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-22 Score=231.23 Aligned_cols=168 Identities=12% Similarity=0.104 Sum_probs=124.3
Q ss_pred cceeeeeee-EeecCcEEEEEeecCCChhhHHHH--HHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeee
Q 005467 465 VPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNL--LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMD 541 (695)
Q Consensus 465 ~~vL~~isl-~I~~Ge~vAIVG~SGSGKSTLl~L--L~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~T 541 (695)
.++|+|||| .|++||+++|+||||||||||+++ +.|+++|.+|.|+++|.+. ..+....++.+|+++|++...
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~--- 100 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE--- 100 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT---
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc---
Confidence 479999999 999999999999999999999999 7899999999999999883 334455677899999997621
Q ss_pred ccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccc----
Q 005467 542 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA---- 617 (695)
Q Consensus 542 I~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSa---- 617 (695)
+|+.+-...+ +++..++++..++.++....| ..|||||+ ++++|||||+.
T Consensus 101 --~~l~~~~~~~--~~~~~~~l~~~~l~~~~~~~~---------~~LS~g~~-------------~~lilDe~t~~~~~~ 154 (525)
T 1tf7_A 101 --GKLFILDASP--DPEGQEVVGGFDLSALIERIN---------YAIQKYRA-------------RRVSIDSVTSVFQQY 154 (525)
T ss_dssp --TSEEEEECCC--CSSCCSCCSSHHHHHHHHHHH---------HHHHHHTC-------------SEEEEECSTTTSTTT
T ss_pred --CcEEEEecCc--ccchhhhhcccCHHHHHHHHH---------HHHHHcCC-------------CEEEECCHHHHHHhc
Confidence 2232210001 111112333444444333322 25788875 47899999985
Q ss_pred -cCcccchhhhhHHHhhhccccCcceEEEEeeecccc---------cc-cCeEEEeeCC
Q 005467 618 -LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI---------KA-VDRIVVIDDG 665 (695)
Q Consensus 618 -LD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti---------~~-aD~IvvL~~G 665 (695)
+|+...+.+.+.++.+++ .|+|+|+|+|+++.+ +. ||+|++|++|
T Consensus 155 ~lD~~~~~~l~~ll~~l~~---~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 155 DASSVVRRELFRLVARLKQ---IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp CCHHHHHHHHHHHHHHHHH---HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHH---CCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 588888899998888753 378999999999885 34 9999999984
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.84 E-value=6e-23 Score=202.55 Aligned_cols=170 Identities=18% Similarity=0.244 Sum_probs=124.5
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCch
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 557 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~e 557 (695)
|++++|+|||||||||++++|+|+++ ++| |.+||.+..+++ .+++++|+++|+. +++ ++|+.-- ....+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~---~~~~~ 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRV---GLEPP 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEEC---CCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcc---cccCC
Confidence 78999999999999999999999999 999 999999887665 4788999999986 343 3444311 00000
Q ss_pred hHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhH-HHHH---HhhcCCcEEEEec--cccccCcccchhhhhH
Q 005467 558 DIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRI-AIAR---AILRDPAILLLDE--ATSALDSESEHYVKGV 629 (695)
Q Consensus 558 ei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRI-aIAR---All~~p~ILILDE--aTSaLD~~tE~~I~~~ 629 (695)
+...+..+|+. .+|||||+++ +++| |+..+|++||||| ||..+|.+.-+.+.+.
T Consensus 70 ------------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 70 ------------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp ------------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ------------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 11123467763 7999999999 6666 7899999999999 7888888766655555
Q ss_pred HHhhhccccCcceEEE--Ee--eecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHHh
Q 005467 630 LHALRNDCKTKRTVIV--IA--HRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLVK 688 (695)
Q Consensus 630 L~~~~~~~~~~~TvIi--Ia--Hrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~~ 688 (695)
+.. .+|+|+ |+ ||.+ ..-+|+|..+++|+|++.... +++..|.++++
T Consensus 132 l~~-------~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~~----nr~~~~~~i~~ 182 (189)
T 2i3b_A 132 LST-------PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVTKE----NRNHLLPDIVT 182 (189)
T ss_dssp HHC-------SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECCSS----SGGGHHHHHHH
T ss_pred HhC-------CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeChH----hHHHHHHHHHH
Confidence 542 245554 34 9987 677999999999999985431 24455555544
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-22 Score=235.70 Aligned_cols=171 Identities=26% Similarity=0.369 Sum_probs=129.1
Q ss_pred hhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhH
Q 005467 491 KSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHE 570 (695)
Q Consensus 491 KSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~ 570 (695)
++|+-.+.-+.+.|+.|+|+++|+++.++....+.+.++++.+-. -+..++...+ ++.+..+ ...+
T Consensus 381 ~~~C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~----l~~~~~~~~~--------~~~~~~~--~~~~ 446 (916)
T 3pih_A 381 QRTCSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLN----LTEREREIVG--------ELLKEIE--KRLE 446 (916)
T ss_dssp EEECTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCC----CCTTTTTTHH--------HHHHHHH--HHHH
T ss_pred cccchhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhcc----CcHHHHHHHH--------hhHHHHH--HHHH
Confidence 456666677788999999999999998888777777777754321 1222222111 1111111 1123
Q ss_pred hHhcCCCCcccc-ccc--cccCCccchhHHHHHHhhcCCc--EEEEeccccccCcccchhhhhHHHhhhccccCcceEEE
Q 005467 571 FILSLPCGYETL-VDD--DLLSGGQKQRIAIARAILRDPA--ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 645 (695)
Q Consensus 571 fI~~LP~G~dT~-vge--~~LSGGQkQRIaIARAll~~p~--ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIi 645 (695)
++..+ |++.. .+. ..||||||||++|||||.++|+ +|||||||++||+...+.+.+.|+++.+ .|+|+|+
T Consensus 447 ~L~~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~---~G~Tviv 521 (916)
T 3pih_A 447 FLVDV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD---LGNTVIV 521 (916)
T ss_dssp HHHTT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT---TTCEEEE
T ss_pred HHHHc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh---cCCEEEE
Confidence 44443 33322 222 3899999999999999999887 9999999999999999999999998853 4799999
Q ss_pred EeeecccccccCeEEEe------eCCeEEEeccchhhhhcC
Q 005467 646 IAHRLSTIKAVDRIVVI------DDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 646 IaHrlsti~~aD~IvvL------~~G~Ive~Gth~eLl~~~ 680 (695)
|+|++..++.||+|++| ++|+|+..|+++|+++..
T Consensus 522 VtHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 522 VEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp ECCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred EeCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 99999999999999999 899999999999998753
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-22 Score=218.85 Aligned_cols=179 Identities=16% Similarity=0.118 Sum_probs=116.4
Q ss_pred eeeeeeeEeec--CcEEEEEeecCCChhhHHHHHHhhhcCCC----ceEEEc----CccCCcchhHHHHhhhccccCCce
Q 005467 467 ILNHVCLTIEA--NEVVAIVGLSGSGKSTFVNLLLRLYEPSD----GQIYID----GFPLTDLDIRWLREKIGFVGQEPQ 536 (695)
Q Consensus 467 vL~~isl~I~~--Ge~vAIVG~SGSGKSTLl~LL~rly~p~~----G~I~id----G~di~~i~~~~lR~~I~~V~Qd~~ 536 (695)
+.+.|+++|++ |+++||+||||||||||+++|+|+|+|++ |+|+++ |.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 34589999999 99999999999999999999999999999 999974 6565 5556666 66999999999
Q ss_pred eeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh-cCCcEEEEec--
Q 005467 537 LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL-RDPAILLLDE-- 613 (695)
Q Consensus 537 LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll-~~p~ILILDE-- 613 (695)
+|++|++|||.++. .+..+.+... +|+|++||..++++.. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~-~~~~~~~~~~--------------------------~~~~~~~~~~i~~~~~~~~~~lllLdE~~ 287 (365)
T 1lw7_A 235 DYAVRHSHKIAFID-TDFITTQAFC--------------------------IQYEGKAHPFLDSMIKEYPFDVTILLKNN 287 (365)
T ss_dssp HHHHHHCSSEEEES-SCHHHHHHHH--------------------------HHHHSCCCHHHHHHHHHSCCSEEEEEECC
T ss_pred HHHHhccCCEEEEe-CCchHHHHHH--------------------------HHHcCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 99999999999883 2322222222 2344455555555553 3566666666
Q ss_pred -cc------cccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhh
Q 005467 614 -AT------SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 614 -aT------SaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|+ +++|......+.++|.++.+. .+.|+++++|--..-+-+|++.++++ +.+.|+.+||.+
T Consensus 288 ~p~~~~g~~~sld~~~r~~l~~~l~~l~~~--~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 288 TEWVDDGLRSLGSQKQRQQFQQLLKKLLDK--YKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp CC-----------CCSHHHHHHHHHHHHHG--GGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred CCcccCCCcCCccHHHHHHHHHHHHHHHHH--cCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 33 456666666666555444221 13566666554222233555555543 445555666643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-22 Score=202.35 Aligned_cols=147 Identities=13% Similarity=0.152 Sum_probs=112.8
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeee---eccccc--ccc
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM---DIKSNI--MYG 549 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~---TI~eNI--~~g 549 (695)
.++|+++||+|||||||||++++|.|++.| .+++|+||+++++. |+++|+ .++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999976 58999999998854 455554 344
Q ss_pred CCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccc-------cCccc
Q 005467 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA-------LDSES 622 (695)
Q Consensus 550 ~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSa-------LD~~t 622 (695)
.+...+.+++.++++..++.+++.. | +++...|++ ++|+||+++||+++.+|+++++||||++ ||+.+
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~~---~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~ 135 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P-VYDFRAYTR---SPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADA 135 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTEE---CSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCH
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C-cccCcccCC---CCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCH
Confidence 2223345678888888887777655 4 444333332 1156899999999999999999999999 99999
Q ss_pred chhhhhHHHhhhccccCcceEEEEeeec
Q 005467 623 EHYVKGVLHALRNDCKTKRTVIVIAHRL 650 (695)
Q Consensus 623 E~~I~~~L~~~~~~~~~~~TvIiIaHrl 650 (695)
+..+.+.+.+..+ .+|+|++.++|+.
T Consensus 136 ~~~~~r~l~r~~~--~~g~t~~~~~~~~ 161 (211)
T 3asz_A 136 DERFIRRLKRDVL--ERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHHHHHHH--HSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhCCCHHHHHHHH
Confidence 9999988876432 2468999999984
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-21 Score=203.78 Aligned_cols=183 Identities=15% Similarity=0.143 Sum_probs=122.8
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCc-eEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G-~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
++|+++++.+++|+.++|+||||||||||++.+++...|++| +|.+.+.+. +...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~---~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE---SVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS---CHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC---CHHHHHHHHHHHHcCCCh---hhcc
Confidence 589999999999999999999999999999999999999988 786655443 445666666655554422 3344
Q ss_pred cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCcc-chhHHHHHHhhcCCcEEEEecccccc-----
Q 005467 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ-KQRIAIARAILRDPAILLLDEATSAL----- 618 (695)
Q Consensus 545 NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQ-kQRIaIARAll~~p~ILILDEaTSaL----- 618 (695)
|+..+ ..++++..++++. .+...+-+++... ..+|.+| +||+. |+|+..+|++||+||||+.+
T Consensus 97 ~l~~~---~~~~~~~~~~~~~-----~l~~~~l~i~~~~--~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKRE---IIENGKFDQWFDE-----LFGNDTFHLYDSF--AEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHH---HHHHTHHHHHHHH-----HHSSSCEEEECCC--CSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred ccccC---CCCHHHHHHHHHH-----HhccCCEEEECCC--CCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 55544 1233444333322 2222222211100 2477788 77777 99999999999999999944
Q ss_pred -Cc-ccchhhhhHHHhhhccccCcceEEEEeeec--c--------------------ccc-ccCeEEEeeCCeE
Q 005467 619 -DS-ESEHYVKGVLHALRNDCKTKRTVIVIAHRL--S--------------------TIK-AVDRIVVIDDGRI 667 (695)
Q Consensus 619 -D~-~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl--s--------------------ti~-~aD~IvvL~~G~I 667 (695)
|. .....+.+.|.++.+. .|.|||+++|.. + .+. .||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~--~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKS--TGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHH--HCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHH--hCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 43 3335677777766432 368999999995 4 454 5999999999975
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-20 Score=225.63 Aligned_cols=174 Identities=16% Similarity=0.176 Sum_probs=124.2
Q ss_pred ceEEEEE-----EeeecCCCCccceeeeeeeEeec-------CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc
Q 005467 448 GHVQFVN-----ISFHYPSRPTVPILNHVCLTIEA-------NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (695)
Q Consensus 448 ~~I~f~n-----VsF~Y~~~~~~~vL~~isl~I~~-------Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d 515 (695)
+.|+++| |+++|++. ..|++|++|++++ |++++|+|||||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~--~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD--DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------CC--CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecCC--ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 3599999 99999532 4799999999988 999999999999999999999 99974
Q ss_pred CCcchhHHHHhhhc-cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccch
Q 005467 516 LTDLDIRWLREKIG-FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 516 i~~i~~~~lR~~I~-~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
+.++| +|||++ ...|+.|||... -. +.+.+. .| ...+|+|+++
T Consensus 815 ---------~aqiG~~Vpq~~--~~l~v~d~I~~r--ig--------------~~d~~~---~~------~stf~~em~~ 858 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEV--CRLTPIDRVFTR--LG--------------ASDRIM---SG------ESTFFVELSE 858 (1022)
T ss_dssp ---------HHTTTCCEESSE--EEECCCSBEEEE--CC--------------------------------CHHHHHHHH
T ss_pred ---------HhheeEEeccCc--CCCCHHHHHHHH--cC--------------CHHHHh---hc------hhhhHHHHHH
Confidence 35677 999998 477899998421 11 111111 12 2356776664
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCccc-chhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEE--Ee
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSES-EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRII--EV 670 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~t-E~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Iv--e~ 670 (695)
+++||++..+|+++||||||+++|+.. ...+.+.|+.+.+ ..|+|+|++||.++.+.. ||++.|+ +|++. +.
T Consensus 859 -~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~--~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~ 934 (1022)
T 2o8b_B 859 -TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAE--TIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVE 934 (1022)
T ss_dssp -HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHH--TSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC--
T ss_pred -HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHh--cCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEe
Confidence 999999999999999999999999987 4546666776643 136899999999998865 8998887 58887 55
Q ss_pred ccchh
Q 005467 671 GNHAE 675 (695)
Q Consensus 671 Gth~e 675 (695)
|+.++
T Consensus 935 ~~~~~ 939 (1022)
T 2o8b_B 935 NECED 939 (1022)
T ss_dssp -----
T ss_pred cCccc
Confidence 65443
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-21 Score=200.82 Aligned_cols=170 Identities=12% Similarity=0.125 Sum_probs=104.4
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
+++|+|+||++++|+++||+|||||||||++++|.|++ |.+.+| ..++.+++++|+.+...-|..+
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHhH
Confidence 57999999999999999999999999999999999988 766665 3577899999997444458888
Q ss_pred cccccCC-cCCCc---hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCc
Q 005467 545 NIMYGCP-KDVKN---EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620 (695)
Q Consensus 545 NI~~g~~-~~~~~---eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~ 620 (695)
|+++... ...++ .+...+.+ .++.+..+.+.. ...||+||+||+++ |++..+|+++|||||....|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~------~L~~l~~~~~~~--~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~ 148 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHR------TLKNIVEGKTVE--VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ 148 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHH------HHHHHHTTCCEE--ECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH
T ss_pred hhhhhccCCCCCCcccccHHHHHH------HHHHHHCCCCee--cccccccccCccCc-eEEecCCCEEEEeCccccccH
Confidence 8765411 01111 11111222 222222222222 13799999999999 688999999999997666554
Q ss_pred ccchhhhhHHHhhhccccCcceEEEEeeecccc-cc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI-KA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 621 ~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti-~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
+ + .+. .+.|++++||...-+ +. ++.+ ++|+ +.+++.+
T Consensus 149 ~----l----~~~-----~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 149 E----I----RDM-----FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp H----H----HTT-----CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred H----H----HHh-----cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 2 2 222 258999999974433 33 4434 6675 5666654
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.1e-20 Score=209.66 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=69.9
Q ss_pred cc-CCccchhHHHHHHhhcCC--cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEee
Q 005467 587 LL-SGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID 663 (695)
Q Consensus 587 ~L-SGGQkQRIaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~ 663 (695)
.| |||||||++||||++.+| ++|||||||++||..+...|.+.|.++.+ ++|||+|||++..+..||++++|+
T Consensus 396 ~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~----~~~vi~itH~~~~~~~~d~~~~~~ 471 (517)
T 4ad8_A 396 DVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD----TRQVLVVTHLAQIAARAHHHYKVE 471 (517)
T ss_dssp SSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH----HSEEEEECCCHHHHHHSSEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC----CCEEEEEecCHHHHHhCCEEEEEe
Confidence 46 999999999999999999 99999999999999999999999998843 589999999999998999999996
Q ss_pred CC
Q 005467 664 DG 665 (695)
Q Consensus 664 ~G 665 (695)
+|
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 55
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-20 Score=213.22 Aligned_cols=169 Identities=15% Similarity=0.123 Sum_probs=118.9
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCce--EEEcCccCCcchhHHHHhh
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ--IYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~--I~idG~di~~i~~~~lR~~ 527 (695)
++.+++++.|++- ..+|. ..|++|++++|+||||||||||++.+++...|. |+ +.+.+++- ...++.+
T Consensus 258 ~~~~~l~~g~~~l--d~vL~---g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~----~~~l~~~ 327 (525)
T 1tf7_A 258 SSNVRVSSGVVRL--DEMCG---GGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEES----RAQLLRN 327 (525)
T ss_dssp CCCCEECCSCHHH--HHHTT---SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSC----HHHHHHH
T ss_pred cccceeecChHHH--HHHhC---CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCC----HHHHHHH
Confidence 5677888877421 12444 499999999999999999999999999999885 54 34444331 1122222
Q ss_pred hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ 607 (695)
. ..+| .+.++ +...++.++... ....|||||+||+++||++..+|+
T Consensus 328 ~-----------------~~~g----~~~~~----~~~~g~~~~~~~---------~p~~LS~g~~q~~~~a~~l~~~p~ 373 (525)
T 1tf7_A 328 A-----------------YSWG----MDFEE----MERQNLLKIVCA---------YPESAGLEDHLQIIKSEINDFKPA 373 (525)
T ss_dssp H-----------------HTTS----CCHHH----HHHTTSEEECCC---------CGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred H-----------------HHcC----CCHHH----HHhCCCEEEEEe---------ccccCCHHHHHHHHHHHHHhhCCC
Confidence 1 0122 11111 111111111111 113799999999999999999999
Q ss_pred EEEEeccccccCcc-----cchhhhhHHHhhhccccCcceEEEEeeec----------cccc-ccCeEEEeeCCe
Q 005467 608 ILLLDEATSALDSE-----SEHYVKGVLHALRNDCKTKRTVIVIAHRL----------STIK-AVDRIVVIDDGR 666 (695)
Q Consensus 608 ILILDEaTSaLD~~-----tE~~I~~~L~~~~~~~~~~~TvIiIaHrl----------sti~-~aD~IvvL~~G~ 666 (695)
+||+| ||++||.. ..+.+.+.++.+++ .|.|+|+|+|.. ..+. .||+|++|++|+
T Consensus 374 llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~---~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 374 RIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ---EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH---TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh---CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999 99999999 78888877777643 478999999998 6665 499999999987
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-20 Score=200.89 Aligned_cols=185 Identities=22% Similarity=0.198 Sum_probs=123.3
Q ss_pred EEEEeeecCCCCccceeeee-eeEeecCcEEEEEeecCCChhhHHHHHHhhh--cCCC----ce-EEEcCccCCcchhHH
Q 005467 452 FVNISFHYPSRPTVPILNHV-CLTIEANEVVAIVGLSGSGKSTFVNLLLRLY--EPSD----GQ-IYIDGFPLTDLDIRW 523 (695)
Q Consensus 452 f~nVsF~Y~~~~~~~vL~~i-sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly--~p~~----G~-I~idG~di~~i~~~~ 523 (695)
.+.+++.+ +.|+++ ++.|++|++++|+||+|||||||++.+++.+ +|++ |+ |+||+.+..
T Consensus 110 ~~~isTG~------~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------ 177 (349)
T 1pzn_A 110 IGRISTGS------KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------ 177 (349)
T ss_dssp CCEECCSC------HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------
T ss_pred CCeecCCC------HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------
Confidence 34555554 346564 6899999999999999999999999999999 6666 68 999997752
Q ss_pred HHhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 524 LREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 524 lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
.++++++++|+..++..++.+||.+.. ..+.++..+.++.+ ...+. +|||||
T Consensus 178 ~~~~i~~i~q~~~~~~~~v~~ni~~~~--~~~~~~~~~~l~~~--~~~~~-------------~lS~G~----------- 229 (349)
T 1pzn_A 178 RPERIREIAQNRGLDPDEVLKHIYVAR--AFNSNHQMLLVQQA--EDKIK-------------ELLNTD----------- 229 (349)
T ss_dssp CHHHHHHHHHTTTCCHHHHGGGEEEEE--CCSHHHHHHHHHHH--HHHHH-------------HSSSSS-----------
T ss_pred CHHHHHHHHHHcCCCHHHHhhCEEEEe--cCChHHHHHHHHHH--HHHHH-------------Hhcccc-----------
Confidence 257899999999999899999999873 22222222222211 11111 356665
Q ss_pred cCCcEEEEeccccccCcccc------------hhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEe
Q 005467 604 RDPAILLLDEATSALDSESE------------HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEV 670 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE------------~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~ 670 (695)
.+|++||+||||+.+|++.+ ..+.+.|.++.+ ..+.|+|+++|..+.... ++.+.+...|++++.
T Consensus 230 ~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~--~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~ 307 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLAN--LYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAH 307 (349)
T ss_dssp SCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHH--HTTCEEEEEEECC---------------CCCCCT
T ss_pred CCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHH--HcCcEEEEEcccccccccccCCccccCCcceEee
Confidence 78999999999999998742 233333444322 236899999998775542 355778889999999
Q ss_pred ccchhhhh
Q 005467 671 GNHAELLH 678 (695)
Q Consensus 671 Gth~eLl~ 678 (695)
+.+..|.-
T Consensus 308 ~~~~rL~l 315 (349)
T 1pzn_A 308 SATLRVYL 315 (349)
T ss_dssp TCSEEEEE
T ss_pred cCcEEEEE
Confidence 98888753
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-19 Score=183.03 Aligned_cols=155 Identities=21% Similarity=0.215 Sum_probs=103.4
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcC-------CCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-------SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 546 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-------~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI 546 (695)
-|++||+++|+||||||||||+++|+|.+.| ..|.|++++.+... ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR------PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC------HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC------HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999998776 55588888865311 2457777787777777999999
Q ss_pred cccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh--hcCCcEEEEeccccccCcccc-
Q 005467 547 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEATSALDSESE- 623 (695)
Q Consensus 547 ~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl--l~~p~ILILDEaTSaLD~~tE- 623 (695)
.+.. ..+..+.....+. +.+.+. +++ ..+|++++|||||+.+|++..
T Consensus 95 ~~~~--~~~~~~~~~~~~~--~~~~~~--------------------------~~~~~~~~~~llilDe~~~~l~~~~~~ 144 (231)
T 4a74_A 95 YVAR--AFNSNHQMLLVQQ--AEDKIK--------------------------ELLNTDRPVKLLIVDSLTSHFRSEYIG 144 (231)
T ss_dssp EEEE--CCSHHHHHHHHHH--HHHHHH--------------------------HHTTSSSCEEEEEEETSSHHHHHHSCS
T ss_pred EEEe--cCChHHHHHHHHH--HHHHHH--------------------------HhcccCCceeEEEECChHHHhccccCC
Confidence 8873 2221111111111 111111 111 248999999999999998532
Q ss_pred -----------hhhhhHHHhhhccccCcceEEEEee----ecccccc-cCeEEEeeCCe
Q 005467 624 -----------HYVKGVLHALRNDCKTKRTVIVIAH----RLSTIKA-VDRIVVIDDGR 666 (695)
Q Consensus 624 -----------~~I~~~L~~~~~~~~~~~TvIiIaH----rlsti~~-aD~IvvL~~G~ 666 (695)
..+.+.|.++.+ ..|.|+|+|+| ....+.+ ||++++|++|+
T Consensus 145 ~~~~~~r~~~~~~~~~~l~~~~~--~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 145 RGALAERQQKLAKHLADLHRLAN--LYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH--HHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred CcchhHHHHHHHHHHHHHHHHHH--HCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 145556655533 24689999999 5555765 99999999763
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.78 E-value=9.5e-19 Score=187.98 Aligned_cols=74 Identities=27% Similarity=0.447 Sum_probs=67.1
Q ss_pred ccCCccch------hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEE
Q 005467 587 LLSGGQKQ------RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 660 (695)
Q Consensus 587 ~LSGGQkQ------RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~Iv 660 (695)
.||||||| |+++|||+..+|++|||||||++||+.+...+.+.|.++.+ .++|+|+|||+......||+|+
T Consensus 248 ~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~---~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK---KIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG---GSSEEEEEESCGGGGGGCSEEE
T ss_pred HCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEEChHHHHHhCCEEE
Confidence 69999999 67889999999999999999999999999999999988743 3579999999988778899999
Q ss_pred Eee
Q 005467 661 VID 663 (695)
Q Consensus 661 vL~ 663 (695)
+|+
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-21 Score=223.76 Aligned_cols=193 Identities=15% Similarity=0.224 Sum_probs=128.2
Q ss_pred eEEEEEEeeecCCCCccceeeee----------eeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-CCceEEEcCccCC
Q 005467 449 HVQFVNISFHYPSRPTVPILNHV----------CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLT 517 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~i----------sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G~I~idG~di~ 517 (695)
.++++|+++.|+.. ..++|+.+ ++++|. +|||||||||||||+++|+|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 58899999999642 13455544 477765 999999999999999999999988 7999999999864
Q ss_pred cch---hHHHHhhhccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccc
Q 005467 518 DLD---IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQK 593 (695)
Q Consensus 518 ~i~---~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQk 593 (695)
..+ ...+|+.|||++|++.+++ .||++||.++. +..+ ... .|..+
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~-------------~~~~------~~~------------~~~s~ 134 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ-------------NAIA------GEG------------MGISH 134 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH-------------HHHH------CSS------------SCCCS
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH-------------HHhc------CCc------------cccch
Confidence 322 3468899999999998775 58888886541 1110 000 23335
Q ss_pred hhHHHHHHhhcCCcEEEEecc------ccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc--------c-----
Q 005467 594 QRIAIARAILRDPAILLLDEA------TSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI--------K----- 654 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEa------TSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti--------~----- 654 (695)
+++.++.+...+|+++++||| |++||+.+++.+.+.+.+..+. ..+-++++++|++... +
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~-~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR-QETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS-SSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc-CCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 666677777779999999999 9999999999999999885432 3457888899987632 1
Q ss_pred ccCeEEEeeCCeEEEeccchhhh
Q 005467 655 AVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 655 ~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
....|+|+.++.+++.|+.+++.
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCCC
T ss_pred CCceEEEecchhhcCcccHHHHH
Confidence 23579999999999999876654
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.9e-21 Score=200.62 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=97.3
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCc--C
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK--D 553 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~--~ 553 (695)
+++.++||+|+|||||||++++|.+++++. | . . ++.+.+|+||.++|+.++++|+.++.+. .
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 468899999999999999999999999874 2 0 1 4456667999999999999999876310 0
Q ss_pred CCchhHHHHHHHhhHhHhHhcCCCCcccccc------c--cccCCccchhHHHH--HHhhcCCcEEEEeccccccCccc
Q 005467 554 VKNEDIEWAAKQAYVHEFILSLPCGYETLVD------D--DLLSGGQKQRIAIA--RAILRDPAILLLDEATSALDSES 622 (695)
Q Consensus 554 ~~~eei~~A~~~a~l~~fI~~LP~G~dT~vg------e--~~LSGGQkQRIaIA--RAll~~p~ILILDEaTSaLD~~t 622 (695)
.+.....++.+.+.+.+++..+++|++|..+ . ..+||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 1111123344566788999999999987533 2 38999999999998 676 999999999999999986
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-20 Score=184.14 Aligned_cols=166 Identities=20% Similarity=0.191 Sum_probs=107.5
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh-----cCCCceEEEc-------CccCC
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY-----EPSDGQIYID-------GFPLT 517 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly-----~p~~G~I~id-------G~di~ 517 (695)
|+++|++|+|+ .+++++ |++++|++++|+|++|||||||++.|.|.. .|+.|.+... +..+-
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 258888 999999999999999999999999999998 8899987652 22222
Q ss_pred cch-----------hHHHHhhhccccCCceeeee-eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccc-cc
Q 005467 518 DLD-----------IRWLREKIGFVGQEPQLLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETL-VD 584 (695)
Q Consensus 518 ~i~-----------~~~lR~~I~~V~Qd~~LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~-vg 584 (695)
|.. .+.+++.++++.|+...+++ .+..|+..+. ...++++.+.++. .+.... ++
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--~~~~~~~~~~~~~-----------~~~~~~~v~ 144 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL--KDLDQQMIEWAVD-----------SNIAVLVLL 144 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--CHHHHHHHHHHHH-----------TTCCEEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC--chhHHHHHHHHHH-----------cCCCeEEEE
Confidence 111 14567778888876544443 5556655431 1112233322221 122222 24
Q ss_pred c--cccCCccchh-HHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhh
Q 005467 585 D--DLLSGGQKQR-IAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 634 (695)
Q Consensus 585 e--~~LSGGQkQR-IaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~ 634 (695)
. +.+|+||||| +..||+++++|+.+++||||||+|.++...+.+.|.+..
T Consensus 145 nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 145 TKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 3 3789999999 899999999999999999999999999999999988764
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-19 Score=210.53 Aligned_cols=158 Identities=20% Similarity=0.355 Sum_probs=112.9
Q ss_pred hcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCC-cCCCchhHHHHHHHhhHhHhHhcCCCCcc
Q 005467 502 YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP-KDVKNEDIEWAAKQAYVHEFILSLPCGYE 580 (695)
Q Consensus 502 y~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~-~~~~~eei~~A~~~a~l~~fI~~LP~G~d 580 (695)
|.|....|+++|.+|.++......+.+++. +|+.+... ..+.+.-+.+..+.. +++..+ |++
T Consensus 432 l~~~~l~v~~~g~~i~q~~~ltV~e~~~f~------------e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~v--GL~ 494 (972)
T 2r6f_A 432 LKKESLAVLVGGKHIGEVTAMSVTEALAFF------------DGLELTEKEAQIARLILREIRDRL---GFLQNV--GLD 494 (972)
T ss_dssp BCTTTTTEESSSCBHHHHHTSBHHHHHHHH------------HHCCCCHHHHHHSHHHHHHHHHHH---HHHHHH--TCT
T ss_pred cCHHHheeEECCCcHHHHhhCCHHHHHHHH------------HhcCCCHHHHHHHHHHHHHHHHHH---HHhhhC--CCC
Confidence 357788999999988776554444444442 33322100 001111111222221 223332 232
Q ss_pred cc-ccc--cccCCccchhHHHHHHhhcCC--cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc
Q 005467 581 TL-VDD--DLLSGGQKQRIAIARAILRDP--AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA 655 (695)
Q Consensus 581 T~-vge--~~LSGGQkQRIaIARAll~~p--~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~ 655 (695)
.. ... ..|||||||||+||+||..+| ++|||||||++||+...+.+.+.|++++. .|.|||+|+||+..++.
T Consensus 495 ~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~---~G~TVIvVeHdl~~i~~ 571 (972)
T 2r6f_A 495 YLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD---LGNTLIVVEHDEDTMLA 571 (972)
T ss_dssp TSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT---TTCEEEEECCCHHHHHS
T ss_pred ccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHh
Confidence 21 122 389999999999999999984 99999999999999999999999999853 47899999999999999
Q ss_pred cCeEEEe------eCCeEEEeccchhhhhc
Q 005467 656 VDRIVVI------DDGRIIEVGNHAELLHK 679 (695)
Q Consensus 656 aD~IvvL------~~G~Ive~Gth~eLl~~ 679 (695)
||+|++| ++|+++..|+++|+++.
T Consensus 572 ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 572 ADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred CCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 9999999 79999999999999874
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.1e-19 Score=194.96 Aligned_cols=74 Identities=27% Similarity=0.372 Sum_probs=67.4
Q ss_pred ccCCccchhHHHHHHhh----cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 587 LLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
.||||||||++|||+|. ++|++++||||||+||+.+...+.+.|.+..+ .+.++|+|||+...+..||+++++
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~---~~~~~ii~th~~~~~~~~d~~~~~ 409 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN---PDLQFIVISLKNTMFEKSDALVGV 409 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB---TTBEEEEECSCHHHHTTCSEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHhCCEEEEE
Confidence 49999999999999999 68999999999999999999999999987632 257999999999888899999998
Q ss_pred e
Q 005467 663 D 663 (695)
Q Consensus 663 ~ 663 (695)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.8e-19 Score=185.62 Aligned_cols=155 Identities=17% Similarity=0.119 Sum_probs=110.6
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch----hHHH--HhhhccccCCceeee-eecccccccc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWL--REKIGFVGQEPQLLQ-MDIKSNIMYG 549 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~----~~~l--R~~I~~V~Qd~~LF~-~TI~eNI~~g 549 (695)
+|++++|||||||||||+++.|+|+++|++|+|.++|.|+.... ...| |..+++|+|++.++. .|+.+|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999986543 2333 457999999987665 4677777654
Q ss_pred CCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhH
Q 005467 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 629 (695)
Q Consensus 550 ~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~ 629 (695)
.. .+.+..+...+...+.. +..++..++||.+||||+..+|+.++| .||+.+...+.+.
T Consensus 181 ~~--------------~~~d~~llDt~G~~~~~--~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~ 239 (304)
T 1rj9_A 181 KA--------------RGYDLLFVDTAGRLHTK--HNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQ 239 (304)
T ss_dssp HH--------------HTCSEEEECCCCCCTTC--HHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHH
T ss_pred Hh--------------CCCCEEEecCCCCCCch--HHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHH
Confidence 10 01111121222222211 123455559999999999999996666 6777777777777
Q ss_pred HHhhhccccCcceEEEEeeeccccc
Q 005467 630 LHALRNDCKTKRTVIVIAHRLSTIK 654 (695)
Q Consensus 630 L~~~~~~~~~~~TvIiIaHrlsti~ 654 (695)
+.++.+ ..+.|+|++||...+.+
T Consensus 240 ~~~~~~--~~~~t~iivTh~d~~a~ 262 (304)
T 1rj9_A 240 AKKFHE--AVGLTGVIVTKLDGTAK 262 (304)
T ss_dssp HHHHHH--HHCCSEEEEECTTSSCC
T ss_pred HHHHHH--HcCCcEEEEECCccccc
Confidence 766542 13689999999866543
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.6e-19 Score=205.73 Aligned_cols=147 Identities=20% Similarity=0.214 Sum_probs=112.7
Q ss_pred cceEEEEEEeeecCCC--CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-CCCceEEEcCccCCcchhHH
Q 005467 447 MGHVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~--~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-p~~G~I~idG~di~~i~~~~ 523 (695)
.+.|++++. ++|-- .+..|++|+||+ |++++|+|||||||||++++++|+.. |+.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 567899988 44421 124799999999 99999999999999999999999975 7888753 1 1
Q ss_pred HHhhhccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 524 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 524 lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
.+..+++|+| +|. -++.||+..| +|+|++|++.+|+++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~g--------------------------------------~S~~~~e~~~la~il 650 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAGG--------------------------------------KSTFMVEMEEVALIL 650 (765)
T ss_dssp SEEEECCCSE---EEEECCC------C--------------------------------------CSHHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHhc--------------------------------------ccHHHHHHHHHHHHH
Confidence 1356899887 554 3666665432 478899999999999
Q ss_pred --hcCCcEEEEecc---ccccCcccc-hhhhhHHHhhhccccCcceEEEEeeeccccccc
Q 005467 603 --LRDPAILLLDEA---TSALDSESE-HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV 656 (695)
Q Consensus 603 --l~~p~ILILDEa---TSaLD~~tE-~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~a 656 (695)
+.+|+++||||| ||+||..+. ..+.+.|.+ .|+|+|++||+.+....|
T Consensus 651 ~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~------~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 651 KEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE------RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH------HTCEEEEECCCHHHHTCC
T ss_pred HhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh------CCCEEEEEeCCHHHHHhh
Confidence 999999999999 999999875 467777765 258999999998776554
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-18 Score=207.47 Aligned_cols=177 Identities=14% Similarity=0.118 Sum_probs=123.5
Q ss_pred ceEEEEEEeeecCCC--CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHH
Q 005467 448 GHVQFVNISFHYPSR--PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~--~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR 525 (695)
+.|++++...-+-.. .+..|++|+||++++|++++|+|||||||||+++.+.... +.
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~---------------------~~ 688 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIV---------------------LM 688 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHH---------------------HH
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHH---------------------HH
Confidence 358888876544221 1246999999999999999999999999999999984321 11
Q ss_pred hhh-ccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh--
Q 005467 526 EKI-GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI-- 602 (695)
Q Consensus 526 ~~I-~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl-- 602 (695)
.++ ++||++...+ .+.+.|.- ..++.+.+ ..++|+|++|+..+|+++
T Consensus 689 aq~G~~vpa~~~~~--~~~d~i~~----------------~ig~~d~l------------~~~lStf~~e~~~~a~il~~ 738 (934)
T 3thx_A 689 AQIGCFVPCESAEV--SIVDCILA----------------RVGAGDSQ------------LKGVSTFMAEMLETASILRS 738 (934)
T ss_dssp HHHTCCBSEEEEEE--ECCSEEEE----------------ECC---------------------CHHHHHHHHHHHHHHH
T ss_pred HhcCCccccccccc--hHHHHHHH----------------hcCchhhH------------HHhHhhhHHHHHHHHHHHHh
Confidence 122 3566654221 12222210 00111111 125788888888888888
Q ss_pred hcCCcEEEEeccccccCcccchhh-hhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhh
Q 005467 603 LRDPAILLLDEATSALDSESEHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I-~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl 677 (695)
+.+|+++||||||+++|+.....+ ...++.+.+ ..|+|+|++||..+....||++..+++|++...|+.+++.
T Consensus 739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~--~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIAT--KIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHH--TTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--cCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEE
Confidence 899999999999999999888777 444454432 1368999999999888899999999999999888877763
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-19 Score=196.13 Aligned_cols=166 Identities=20% Similarity=0.171 Sum_probs=102.5
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
+.|+++||+++|++ ..+++|+||+| +|||+||||||||++.|+|+..|..| .+|.++... ....++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeee
Confidence 45899999999964 36999999998 99999999999999999999986666 244433221 1112457
Q ss_pred hccccCCceee-eeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 528 IGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 528 I~~V~Qd~~LF-~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
+++++|+..++ ..||.||+.++. ..+.++.++. +.+++.+ .++++.+||++||||++++|
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~--~~~~~~~~~~-----i~~~i~~------------~~~~~l~qr~~IaRal~~d~ 137 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGD--AVDNSNCWQP-----VIDYIDS------------KFEDYLNAESRVNRRQMPDN 137 (418)
T ss_dssp EECC------CEEEEEEECC-------------CHH-----HHHHHHH------------HHHHHTTTSCC-CCCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhh--hccchhhHHH-----HHHHHHH------------HHHHHHHHHHHHHHHhccCC
Confidence 89999998876 679999999983 2222222221 2233332 45667889999999999999
Q ss_pred c---EEEEeccc-cccCcccchhhhhHHHhhhccccCcceEEEEeeecccc
Q 005467 607 A---ILLLDEAT-SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 653 (695)
Q Consensus 607 ~---ILILDEaT-SaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti 653 (695)
+ +|++|||| ++||+... .+ +..+. .+.++|+|.|+..++
T Consensus 138 ~~~vlL~ldePt~~~L~~~d~-~~---lk~L~----~~v~iIlVinK~Dll 180 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGLKPLDI-EF---MKRLH----EKVNIIPLIAKADTL 180 (418)
T ss_dssp -CCEEEEECCC-CCSCCHHHH-HH---HHHHT----TTSEEEEEEESTTSS
T ss_pred CeeEEEEEecCcccCCCHHHH-HH---HHHHh----ccCcEEEEEEcccCc
Confidence 9 99999999 58998653 23 33332 247899999988765
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-18 Score=162.49 Aligned_cols=88 Identities=24% Similarity=0.403 Sum_probs=75.0
Q ss_pred CCccccc----cc---cccCCccchhHHHH------HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceE
Q 005467 577 CGYETLV----DD---DLLSGGQKQRIAIA------RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTV 643 (695)
Q Consensus 577 ~G~dT~v----ge---~~LSGGQkQRIaIA------RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~Tv 643 (695)
++|++.+ .+ ..||||||||++|| ||++.+|++|+|||||++||+++...+.+.|.++.+ .|+|+
T Consensus 40 ~~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~~ti 116 (148)
T 1f2t_B 40 NKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK---KIPQV 116 (148)
T ss_dssp SSEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG---GSSEE
T ss_pred CceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc---cCCEE
Confidence 3777776 22 28999999999876 999999999999999999999999999999988743 36899
Q ss_pred EEEeeecccccccCeEEEe--eCCeE
Q 005467 644 IVIAHRLSTIKAVDRIVVI--DDGRI 667 (695)
Q Consensus 644 IiIaHrlsti~~aD~IvvL--~~G~I 667 (695)
|+|||+....+.||+|++| ++|..
T Consensus 117 iivsH~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 117 ILVSHDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp EEEESCGGGGGGCSEEEEEEEETTEE
T ss_pred EEEEChHHHHHhCCEEEEEEcCCCeE
Confidence 9999999766779999999 45643
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.4e-19 Score=186.81 Aligned_cols=165 Identities=18% Similarity=0.123 Sum_probs=81.6
Q ss_pred EEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh-hcCCCceEEEcCccCCcchhHHHHhhhccc
Q 005467 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPLTDLDIRWLREKIGFV 531 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl-y~p~~G~I~idG~di~~i~~~~lR~~I~~V 531 (695)
+|++++|++ +.+++|++|+| +||||||+|||||++.|.|. ..|.+| |.++|.++.. .. -++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~--~~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV--QIEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc--eEeeEEEE
Confidence 578899964 36999999998 99999999999999999998 889999 9999987653 11 14678999
Q ss_pred cCCcee-eeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEE
Q 005467 532 GQEPQL-LQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILL 610 (695)
Q Consensus 532 ~Qd~~L-F~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILI 610 (695)
+|+..+ ..-||.||..++.. ....++.....+. +.+..+. . -+.+|||||||+++|||+. +|+
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~-~~~~e~~~~l~~~--l~~~~~~-------~--~~~~sgg~rqrv~~ara~~----ll~ 132 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDA-INCRDCFKTIISY--IDEQFER-------Y--LHDESGLNRRHIIDNRVHC----CFY 132 (301)
T ss_dssp EC---CCEEEEEEEEC------------CTTHHHH--HHHHHHH-------H--HHHHTSSCCTTCCCCCCCE----EEE
T ss_pred ecCCCcccCcchhhhhhhhhh-cCcHHHHHHHHHH--HHHHHHH-------H--HHHhCHHhhhhhhhhhhhh----eee
Confidence 997664 46799999988731 1111111111111 1111100 0 0269999999999999985 999
Q ss_pred Eeccccc-cCcccchhhhhHHHhhhccccCcceEEEEeeeccc
Q 005467 611 LDEATSA-LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLST 652 (695)
Q Consensus 611 LDEaTSa-LD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst 652 (695)
+||||++ ||+... +.++++.+ ..+.++++..|++.+
T Consensus 133 ldePt~~~Ld~~~~----~~l~~l~~--~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 133 FISPFGHGLKPLDV----AFMKAIHN--KVNIVPVIAKADTLT 169 (301)
T ss_dssp EECSSSSSCCHHHH----HHHHHHTT--TSCEEEEECCGGGSC
T ss_pred eecCcccCCCHHHH----HHHHHHHh--cCCEEEEEEeCCCCC
Confidence 9999985 999763 33444422 235688888999864
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.9e-18 Score=169.07 Aligned_cols=171 Identities=11% Similarity=0.047 Sum_probs=118.4
Q ss_pred cceeeeeee-EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecc
Q 005467 465 VPILNHVCL-TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 543 (695)
Q Consensus 465 ~~vL~~isl-~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~ 543 (695)
.+.|+++.. .+++|+.++|+||||||||||++.+++...+.+|+|.+.+.+...-........+++.+|+.. .
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYI------E 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGB------T
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHh------h
Confidence 357888888 899999999999999999999999999999999999988766532222222234566555432 1
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCc--EEEEecccccc--C
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPA--ILLLDEATSAL--D 619 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~--ILILDEaTSaL--D 619 (695)
+++..- + .... . .+ ..+ .....|.+|.++...+.+...+|+ ++|+||||+.+ |
T Consensus 83 ~~~~~~-~-~~~~-~-------~~-~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d 139 (235)
T 2w0m_A 83 KKLIII-D-ALMK-E-------KE-DQW------------SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK 139 (235)
T ss_dssp TTEEEE-E-CCC-------------CTT------------BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC
T ss_pred CCEEEE-e-cccc-c-------cC-cee------------eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC
Confidence 122221 0 1110 0 00 000 011348888888888777778999 99999999988 8
Q ss_pred cccchhhhhHHHhhhccccCcceEEEEeeec--------cccc-ccCeEEEeeCCe
Q 005467 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRL--------STIK-AVDRIVVIDDGR 666 (695)
Q Consensus 620 ~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl--------sti~-~aD~IvvL~~G~ 666 (695)
+.....+.+.|.++.+. .|.|+|+++|.. ..+. .||+|++|++.+
T Consensus 140 ~~~~~~~~~~l~~~~~~--~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 140 PAMARKISYYLKRVLNK--WNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGGHHHHHHHHHHHHHH--TTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHh--CCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 88778888888776432 468999999998 4455 499999998653
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-18 Score=186.36 Aligned_cols=147 Identities=22% Similarity=0.260 Sum_probs=103.3
Q ss_pred EEEeeecCCCCccceeeeeee-------EeecCcEEEEEeecCCChhhHHHHHHhhhcCC-CceEEEcCccCCcchhHHH
Q 005467 453 VNISFHYPSRPTVPILNHVCL-------TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl-------~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-~G~I~idG~di~~i~~~~l 524 (695)
++++|+|... ..+.|+++.+ .+++|+.++|+|||||||||++++|+|+++|+ +|.|...+.++. +. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---h
Confidence 6788888643 3467777776 78899999999999999999999999999997 577755443332 11 1
Q ss_pred HhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
+...++++|... + ....+-.+ +|||||..
T Consensus 167 ~~~~~~v~q~~~------------~-~~~~~~~~--------------------------------------~La~aL~~ 195 (356)
T 3jvv_A 167 ESKKCLVNQREV------------H-RDTLGFSE--------------------------------------ALRSALRE 195 (356)
T ss_dssp CCSSSEEEEEEB------------T-TTBSCHHH--------------------------------------HHHHHTTS
T ss_pred hccccceeeeee------------c-cccCCHHH--------------------------------------HHHHHhhh
Confidence 122233333211 1 00001000 99999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCC
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDG 665 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G 665 (695)
+|++|++|||| |.++.+.+.++ . ..|+|+++++|..+.+..+||+++|..|
T Consensus 196 ~PdvillDEp~---d~e~~~~~~~~---~----~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 196 DPDIILVGEMR---DLETIRLALTA---A----ETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp CCSEEEESCCC---SHHHHHHHHHH---H----HTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred CcCEEecCCCC---CHHHHHHHHHH---H----hcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 99999999999 66664443333 2 2478999999999999889999988544
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-18 Score=173.31 Aligned_cols=117 Identities=18% Similarity=0.092 Sum_probs=85.4
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCC
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 554 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~ 554 (695)
.++|+++||+||||||||||+++|+|+++|+ | ..+++|+||.+.++.+..+|+......+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999976 4 24566667666666666666532101111
Q ss_pred CchhHHHHHHHhhHhHhHhcCCCC--cccccccc--ccCCccchhHHHH-HHhhcCCcEEEEeccc
Q 005467 555 KNEDIEWAAKQAYVHEFILSLPCG--YETLVDDD--LLSGGQKQRIAIA-RAILRDPAILLLDEAT 615 (695)
Q Consensus 555 ~~eei~~A~~~a~l~~fI~~LP~G--~dT~vge~--~LSGGQkQRIaIA-RAll~~p~ILILDEaT 615 (695)
..+.+...+.+++..++.| +++++.+. .+||||+||+++| |+++.+++++++|||.
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 1122234445556666665 66677764 7899999999999 9999999999999974
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-18 Score=180.96 Aligned_cols=152 Identities=18% Similarity=0.146 Sum_probs=110.6
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhh--------cCCCceEEEcCccCCcch---------------hHHHHhhhccc---
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLY--------EPSDGQIYIDGFPLTDLD---------------IRWLREKIGFV--- 531 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly--------~p~~G~I~idG~di~~i~---------------~~~lR~~I~~V--- 531 (695)
=++++|+|+|||||||++|.|+|++ .|+.|+|.+||.++...+ ..++++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 4689999999999999999999998 889999999999987763 35788899988
Q ss_pred cCCce-eeeeeccccccccCCcCCCchhHHHHH-HHhhHhHhHhcCCCCccccccc-------cccCCccchhHHHHHHh
Q 005467 532 GQEPQ-LLQMDIKSNIMYGCPKDVKNEDIEWAA-KQAYVHEFILSLPCGYETLVDD-------DLLSGGQKQRIAIARAI 602 (695)
Q Consensus 532 ~Qd~~-LF~~TI~eNI~~g~~~~~~~eei~~A~-~~a~l~~fI~~LP~G~dT~vge-------~~LSGGQkQRIaIARAl 602 (695)
+|++. .|+.++.||..++. + +.+.+.. ......+. ..+ ++.-|.++- .++||||+||...+|++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~-p----~~~~~~~~~~~~~~~~-~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~il 156 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMAD-P----GPIIQTFFSHEVLCQR-YLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRIL 156 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCC-H----HHHHHHHHHSHHHHHH-EEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEE
T ss_pred HhcCCCCCCEEEEeCCCCCC-H----HHHHHHHhcCccccCe-EEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEE
Confidence 68876 47899999999883 2 2222221 00000000 001 122233331 16899999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecc
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLS 651 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrls 651 (695)
+.+|+++ ||| +.+.+.++++. ++.|+++++|+..
T Consensus 157 l~k~dl~--de~---------~~l~~~l~~l~----~~~~ii~~sh~~~ 190 (318)
T 1nij_A 157 LTKTDVA--GEA---------EKLHERLARIN----ARAPVYTVTHGDI 190 (318)
T ss_dssp EECTTTC--SCT---------HHHHHHHHHHC----SSSCEEECCSSCC
T ss_pred EECcccC--CHH---------HHHHHHHHHhC----CCCeEEEecccCC
Confidence 9999887 887 67777777762 4689999999743
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-17 Score=166.73 Aligned_cols=144 Identities=10% Similarity=0.099 Sum_probs=105.7
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhcC--CCceEEEcCccCCcchhHHHHhhhccccCCceeeee-ec----cc
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DI----KS 544 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p--~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~-TI----~e 544 (695)
.-..++|+.++|+||||||||||+++|+|+++| ..|.|.+++.+.+. ..++.++|++|++.+|.. ++ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 346789999999999999999999999999986 78999999977653 235689999999988865 44 57
Q ss_pred cccccCCc-CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccc
Q 005467 545 NIMYGCPK-DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623 (695)
Q Consensus 545 NI~~g~~~-~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE 623 (695)
|+.+.... ..+.++ ++.++.+++++||| ||+++.
T Consensus 86 ~~~~~~~~yg~~~~~----------------------------------------v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 86 HAEVFGNYYGTSREA----------------------------------------IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp EEEETTEEEEEEHHH----------------------------------------HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHHHHhccCCCCHHH----------------------------------------HHHHHhcCCeEEEE-----ECHHHH
Confidence 76653110 011111 23334446999999 999999
Q ss_pred hhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc
Q 005467 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 624 ~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
..+.+.+. +++|+++++|+++.++. |+ +++| .|+.+++.++
T Consensus 121 ~~i~~~l~-------~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 121 QQIRQKMP-------HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp HHHHHHCT-------TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHHH
T ss_pred HHHHHHcc-------CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHHH
Confidence 98887664 25899999999998765 43 7777 6788888654
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-16 Score=152.78 Aligned_cols=78 Identities=26% Similarity=0.366 Sum_probs=69.1
Q ss_pred ccCCccchhHHHHHHhh----cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 587 LLSGGQKQRIAIARAIL----RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll----~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
.||||||||++||||+. ++|+++||||||++||+.++..+.+.|.+.. ++.++|+||||..+...||+|+.+
T Consensus 64 ~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~----~~~~~ivith~~~~~~~ad~i~~v 139 (173)
T 3kta_B 64 AMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS----KESQFIVITLRDVMMANADKIIGV 139 (173)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSCHHHHTTCSEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc----cCCEEEEEEecHHHHHhCCEEEEE
Confidence 79999999999999995 6679999999999999999999999998874 347999999999999999999855
Q ss_pred --eCCeEE
Q 005467 663 --DDGRII 668 (695)
Q Consensus 663 --~~G~Iv 668 (695)
++|...
T Consensus 140 ~~~~g~s~ 147 (173)
T 3kta_B 140 SMRDGVSK 147 (173)
T ss_dssp EEETTEEE
T ss_pred EecCCEEE
Confidence 577543
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-16 Score=189.29 Aligned_cols=161 Identities=14% Similarity=0.173 Sum_probs=108.8
Q ss_pred eEEEEEEeeecC----CCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH
Q 005467 449 HVQFVNISFHYP----SRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~----~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l 524 (695)
.|++++..--.= ...+..|++|+||++++|++++|+|||||||||+++.+.+..- +
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~--------------------~ 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI--------------------M 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH--------------------H
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH--------------------H
Confidence 577776543220 1113579999999999999999999999999999999976421 1
Q ss_pred HhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
.+.-.+||++.. .-++.++|. . ..++.+.+. .| -..+|+|++|+..|+|+ ..
T Consensus 700 aq~g~~vpa~~~--~i~~~d~i~-~---------------~ig~~d~l~---~~------~stfs~em~~~~~il~~-a~ 751 (918)
T 3thx_B 700 AQIGSYVPAEEA--TIGIVDGIF-T---------------RMGAADNIY---KG------RSTFMEELTDTAEIIRK-AT 751 (918)
T ss_dssp HHHTCCBSSSEE--EEECCSEEE-E---------------EC-------------------CCHHHHHHHHHHHHHH-CC
T ss_pred hhcCccccchhh--hhhHHHHHH-H---------------hCChHHHHH---Hh------HHHhhHHHHHHHHHHHh-cc
Confidence 122236666542 112333331 0 011111111 11 13689999999999999 89
Q ss_pred CCcEEEEeccccccCcccchhhh-hHHHhhhccccCcceEEEEeeecccccccCeE
Q 005467 605 DPAILLLDEATSALDSESEHYVK-GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 659 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~-~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~I 659 (695)
+|+++||||||++||+.....+. ..++.+.+ ..|+|+|++||.++..+.||+.
T Consensus 752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~--~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIR--DVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHH--TTCCEEEEECSCGGGGGHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH--hcCCeEEEEeCcHHHHHHHhhc
Confidence 99999999999999999888887 44444432 2468999999999887777754
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.3e-16 Score=153.31 Aligned_cols=153 Identities=16% Similarity=0.105 Sum_probs=99.7
Q ss_pred ceeeeeee-EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 466 PILNHVCL-TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 466 ~vL~~isl-~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
+.|+++.. -+++|++++|+||+||||||+++.+++ .+..+.++++..+ ..+.+.+++....
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~~~~~-------------- 68 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQMAET-------------- 68 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHHHHHT--------------
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHHHHHh--------------
Confidence 46777765 799999999999999999999999999 4444555665533 1222333321100
Q ss_pred cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCcc--chhHHHHHHhhcC-CcEEEEeccccccCcc
Q 005467 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQ--KQRIAIARAILRD-PAILLLDEATSALDSE 621 (695)
Q Consensus 545 NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQ--kQRIaIARAll~~-p~ILILDEaTSaLD~~ 621 (695)
++ .+.+++ .+.+ .-...|+++ +|+++.||+++++ |+++|+||||+.+|..
T Consensus 69 ---~~----~~~~~~------------~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 69 ---RG----LNPEEA------------LSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp ---TT----CCHHHH------------HHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred ---cC----CChHHH------------hhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 01 011111 1110 001345554 6789999999986 9999999999999986
Q ss_pred cc-----hh---hhhHHHhhhccccCcceEEEEeeeccc-------------c-cccCeEEEeeCC
Q 005467 622 SE-----HY---VKGVLHALRNDCKTKRTVIVIAHRLST-------------I-KAVDRIVVIDDG 665 (695)
Q Consensus 622 tE-----~~---I~~~L~~~~~~~~~~~TvIiIaHrlst-------------i-~~aD~IvvL~~G 665 (695)
.+ +. +.+.|.++.+. .+.|+|+++|.... + ..||+|++|++.
T Consensus 122 ~~~~~~~~~~~~~~~~L~~l~~~--~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 122 ENRSGLIAELSRQLQVLLWIARK--HNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGSSTTHHHHHHHHHHHHHHHHH--HTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CchHHHHHHHHHHHHHHHHHHHH--cCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 54 23 33445554331 36899999998763 3 359999999865
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.1e-17 Score=176.06 Aligned_cols=179 Identities=16% Similarity=0.174 Sum_probs=113.1
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcE--EEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~--vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~ 526 (695)
.++.++ +++|++ .+ |+|+||++++|++ +|||||||||||||+++|+|+. ++|.++...+....++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 466777 888964 35 9999999999999 9999999999999999999994 4566655444444566
Q ss_pred hhccccCCceee-eeeccccccccCCcCCCchhHHH----HHHHhhHhHhHhc-------CCCCccccc----c---c--
Q 005467 527 KIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEW----AAKQAYVHEFILS-------LPCGYETLV----D---D-- 585 (695)
Q Consensus 527 ~I~~V~Qd~~LF-~~TI~eNI~~g~~~~~~~eei~~----A~~~a~l~~fI~~-------LP~G~dT~v----g---e-- 585 (695)
.+++++|++.++ ..|+.||+.+|. ..+.+.-+. .++ ..+.+++.. ++..-|+.| . +
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~--~~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGD--QINKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC---CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred eEEEEeecCccccccchhhhhhhhh--ccccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 899999999887 579999999993 333322111 111 122233332 222234432 1 1
Q ss_pred cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHh-hhccccCcceEEEEeee
Q 005467 586 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHA-LRNDCKTKRTVIVIAHR 649 (695)
Q Consensus 586 ~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~-~~~~~~~~~TvIiIaHr 649 (695)
..|+-.+ +.|+|+|-.+++|+++||+|..|.++.-..+.+.+++ +. ..|.+++.|+..
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~---~~gi~I~~is~~ 218 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV---SNGVQIYQFPTD 218 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB---TTBCCCCCCC--
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH---HcCCcEEecCCC
Confidence 1344433 8999999999999999999999987655556666665 42 357888888853
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-17 Score=178.97 Aligned_cols=179 Identities=13% Similarity=0.103 Sum_probs=121.7
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh----HHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI----RWL 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~----~~l 524 (695)
.|+++|++++|.+ ..+|+++||++++|++++|+||+|||||||++.|.|++.|++|+|.+.|.|+..... ...
T Consensus 29 ~ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~ 105 (337)
T 2qm8_A 29 LAESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGD 105 (337)
T ss_dssp HHTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCC
T ss_pred HHeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHH
Confidence 3778888999853 369999999999999999999999999999999999999999999999998865432 245
Q ss_pred HhhhccccCCceeeeeec-------------cccc----------cccCCcCC--CchhHHHHHH-------------Hh
Q 005467 525 REKIGFVGQEPQLLQMDI-------------KSNI----------MYGCPKDV--KNEDIEWAAK-------------QA 566 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~~TI-------------~eNI----------~~g~~~~~--~~eei~~A~~-------------~a 566 (695)
|+++++|+|++.+|..+. +|.+ .+-..+.. ++..+.+-++ ..
T Consensus 106 ~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~ 185 (337)
T 2qm8_A 106 KTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQ 185 (337)
T ss_dssp GGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-----
T ss_pred hhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHH
Confidence 788999999999986421 1111 00000000 0000100000 00
Q ss_pred hHhHhHhcCCCCcc-cccc--c-cccCCccchhHHHHHHhhc------CCcEEEEeccccccCcccchhhhhHHHhhh
Q 005467 567 YVHEFILSLPCGYE-TLVD--D-DLLSGGQKQRIAIARAILR------DPAILLLDEATSALDSESEHYVKGVLHALR 634 (695)
Q Consensus 567 ~l~~fI~~LP~G~d-T~vg--e-~~LSGGQkQRIaIARAll~------~p~ILILDEaTSaLD~~tE~~I~~~L~~~~ 634 (695)
.+.+.+.+.|+-+- +.+. + ..+|+|++|+++.|++++. +|+++. |||+|.+.-..+.+.|.+..
T Consensus 186 ~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 186 GIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp -CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 00111112222100 1111 1 3579999999999999997 688886 99999999999999888763
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-17 Score=160.43 Aligned_cols=159 Identities=15% Similarity=0.036 Sum_probs=98.5
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcC
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 553 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~ 553 (695)
.+++|++++|+|||||||||++++|++. |..|.|.+||.++..... -++.++|++|+.. .+.|+.+|+.+.. ..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~-~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA-GR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH-HH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH-HH
Confidence 4789999999999999999999999998 788999999977643221 1345789999765 4567888876531 00
Q ss_pred CCchhHHHHHHHhhHhHhHhcCCC--Cccccc--cc--cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhh
Q 005467 554 VKNEDIEWAAKQAYVHEFILSLPC--GYETLV--DD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627 (695)
Q Consensus 554 ~~~eei~~A~~~a~l~~fI~~LP~--G~dT~v--ge--~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~ 627 (695)
. . ..+-...++.+.. +++..- +. ..+|+||+||+++||++.++|+++ +|++..+.+.
T Consensus 79 ~--------~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 79 Y--------A-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp H--------H-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred H--------h-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 0 0 0000000111100 111100 11 369999999999999999999987 4665555555
Q ss_pred hHHHhhhccccCcceEEEEeeecccccccCeE
Q 005467 628 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 659 (695)
Q Consensus 628 ~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~I 659 (695)
+.+..+.. ...+++.|++.+.-+.+|+|
T Consensus 142 ~~~~~l~~----~~~~~i~t~~~~~~~~~~~i 169 (191)
T 1zp6_A 142 SQFADLGA----FEHHVLPVSGKDTDQALQSA 169 (191)
T ss_dssp HHTTCCGG----GGGGEEECTTCCTTTTTTTT
T ss_pred HHHhccCc----ccccEEECCCCCHHHHHHHH
Confidence 55544321 12344556544433345554
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-16 Score=183.32 Aligned_cols=168 Identities=14% Similarity=0.142 Sum_probs=109.7
Q ss_pred eEEEEEEeeecCCC----CccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcC-CCceEEEcCccCCcchhHH
Q 005467 449 HVQFVNISFHYPSR----PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIYIDGFPLTDLDIRW 523 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~----~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G~I~idG~di~~i~~~~ 523 (695)
.|++++.. +|-- .+..+++|+||+ ++|++++|+|||||||||+++++.|+.-+ +.|. .+..
T Consensus 577 ~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa----- 642 (800)
T 1wb9_A 577 GIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA----- 642 (800)
T ss_dssp CEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----
T ss_pred CEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----
Confidence 47777653 3310 124699999999 99999999999999999999999998532 2231 1110
Q ss_pred HHhhhccccCCceeee-eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 524 LREKIGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 524 lR~~I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
-+..++++.| +|. -++.||+..+ . ..+|+|+++ ++.+...
T Consensus 643 ~~~~i~~~~~---i~~~~~~~d~l~~~-----------------------------~------stf~~e~~~-~~~il~~ 683 (800)
T 1wb9_A 643 QKVEIGPIDR---IFTRVGAADDLASG-----------------------------R------STFMVEMTE-TANILHN 683 (800)
T ss_dssp SEEEECCCCE---EEEEEC----------------------------------------------CHHHHHH-HHHHHHH
T ss_pred hcccceeHHH---HHhhCCHHHHHHhh-----------------------------h------hhhhHHHHH-HHHHHHh
Confidence 0134566554 332 2333333221 1 124555554 4444456
Q ss_pred hcCCcEEEEeccccccCcccchhh-hhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEec
Q 005467 603 LRDPAILLLDEATSALDSESEHYV-KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 671 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I-~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~G 671 (695)
..+|+++||||||+++|+.....+ .+.++.+.+ ..|+|+|++||..+....||++..++||++....
T Consensus 684 a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~--~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 684 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLAN--KIKALTLFATHYFELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHH--TTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEE
T ss_pred ccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHh--ccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEE
Confidence 889999999999999999876665 455555532 1368999999999988889988888888876543
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-15 Score=152.28 Aligned_cols=150 Identities=17% Similarity=0.256 Sum_probs=97.4
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHh--hhcC-----CCceEEEcCccC-CcchhHHHHhhhccccCCceeeeeecccc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLR--LYEP-----SDGQIYIDGFPL-TDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~r--ly~p-----~~G~I~idG~di-~~i~~~~lR~~I~~V~Qd~~LF~~TI~eN 545 (695)
-|++|++++|+||||||||||++.+++ ..+| .+|.+++++.+. ..-....+++.+++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 4555 678999999763 222345566788988775 5678
Q ss_pred ccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcc----
Q 005467 546 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE---- 621 (695)
Q Consensus 546 I~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~---- 621 (695)
+.+.. ..+.++..+.++. +.+.+. -.+|+++|+||+|+.+|.+
T Consensus 93 ~~~~~--~~~~~~~~~~~~~--~~~~~~-----------------------------~~~~~lliiD~~~~~~~~~~~~~ 139 (243)
T 1n0w_A 93 VAYAR--AFNTDHQTQLLYQ--ASAMMV-----------------------------ESRYALLIVDSATALYRTDYSGR 139 (243)
T ss_dssp EEEEE--CCSHHHHHHHHHH--HHHHHH-----------------------------HSCEEEEEEETSSGGGC------
T ss_pred eEEEe--cCCHHHHHHHHHH--HHHHHh-----------------------------cCCceEEEEeCchHHHHHHhcCC
Confidence 77652 2233333322211 111111 1689999999999999986
Q ss_pred ---cch-----hhhhHHHhhhccccCcceEEEEeeecccc-------------------c-ccCeEEEeeCC
Q 005467 622 ---SEH-----YVKGVLHALRNDCKTKRTVIVIAHRLSTI-------------------K-AVDRIVVIDDG 665 (695)
Q Consensus 622 ---tE~-----~I~~~L~~~~~~~~~~~TvIiIaHrlsti-------------------~-~aD~IvvL~~G 665 (695)
+++ .+.+.|.++.+ ..|+|||+++|-.... . .||.+++|++|
T Consensus 140 ~~~~~r~~~~~~~~~~l~~~~~--~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 140 GELSARQMHLARFLRMLLRLAD--EFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH--HHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHHHH--HcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 322 23333443322 1368999999955432 2 59999999976
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.6e-16 Score=161.56 Aligned_cols=151 Identities=15% Similarity=0.202 Sum_probs=91.7
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccc-cccCCc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI-MYGCPK 552 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI-~~g~~~ 552 (695)
-+++|++++|+||+|||||||++.+++... .|++. .|.+..+ +..+.|++.+... ..+..++ .++ .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g--~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALG--A 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHH--T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHH--h
Confidence 478999999999999999999999999775 57664 3543211 1233443333211 1111111 112 1
Q ss_pred CCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCcEEEEecccc--ccCcccc---hh
Q 005467 553 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATS--ALDSESE---HY 625 (695)
Q Consensus 553 ~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ILILDEaTS--aLD~~tE---~~ 625 (695)
+.++++..++++...+. ...+. ..||+||+|++ |+++++|+++||||||+ ++|..+. ..
T Consensus 93 ~~~~~~~~~~~~~l~l~-----------~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 HLSAEERQAVADGLLIQ-----------PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp TSCHHHHHHHHHHEEEC-----------CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred hcChhhhhhccCceEEe-----------ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 12222222222222211 11121 26899998765 78999999999999999 9998766 66
Q ss_pred hhhHHHhhhccccCcceEEEEeeecccc
Q 005467 626 VKGVLHALRNDCKTKRTVIVIAHRLSTI 653 (695)
Q Consensus 626 I~~~L~~~~~~~~~~~TvIiIaHrlsti 653 (695)
+.+.|.++.+ ..|+|+|+|+|.....
T Consensus 159 ~~~~L~~l~~--~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 159 VIGRMEAIAA--DTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHH--HHCCEEEEEEEC----
T ss_pred HHHHHHHHHH--HcCCEEEEEecCCCcc
Confidence 6677776643 2468999999987654
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-16 Score=178.81 Aligned_cols=174 Identities=16% Similarity=0.185 Sum_probs=118.7
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeee--eec
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ--MDI 542 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~--~TI 542 (695)
..+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|+++|.+--.++. ++.++++.|+.. .. .|.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCH
Confidence 358899999999999999999999999999999999999999999999976222221 234555665543 22 134
Q ss_pred cccccccC---C-----cCCCchhHHHHHHHhhH-------------hHhHh---cCCCCcccccc--------c-cccC
Q 005467 543 KSNIMYGC---P-----KDVKNEDIEWAAKQAYV-------------HEFIL---SLPCGYETLVD--------D-DLLS 589 (695)
Q Consensus 543 ~eNI~~g~---~-----~~~~~eei~~A~~~a~l-------------~~fI~---~LP~G~dT~vg--------e-~~LS 589 (695)
+++++..- | .+..++|...+++.++- .+.+. ..|.|....+. - ..+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 43332110 1 14556667666666541 12222 22334433222 1 2689
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEE--Eeeecccccc-cC
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV--IAHRLSTIKA-VD 657 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIi--IaHrlsti~~-aD 657 (695)
||||||.++|.+ | |++||+++...+.+.+.++.+ .++|+++ +||+++.+.. |+
T Consensus 403 ~G~~~R~~~ai~-----------E-~~GlDp~~~~~~~~~l~~~~~---~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEVN-----------E-ILGIDPVDKNLLVNQFVKWDP---KEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEEE-----------E-EEECCSSSSCCEEEEEEEEET---TTTEEEECSCCTHHHHHHHHHT
T ss_pred CCCceEEEEEEE-----------E-EcCcccCCCeEEEEEeEEEcc---cCCEEEEcccHHHHHHHHHHcC
Confidence 999999988621 7 999999999888887776632 3688875 8999998754 54
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.4e-18 Score=166.06 Aligned_cols=163 Identities=17% Similarity=0.116 Sum_probs=106.5
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceee-eeeccccccccCCcCCCc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKN 556 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF-~~TI~eNI~~g~~~~~~~ 556 (695)
|++++|+|||||||||+++.|++ |.+|.+.+||.++... ..+++++|+...+ ..++.+|+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 78999999999999999999997 6789999998654321 2467777765322 23454544322
Q ss_pred hhHHHHHHHhhHh--HhHhcCCCCccccccc------ccc--CCccchhHHHHH------HhhcCCcEEEEeccccccCc
Q 005467 557 EDIEWAAKQAYVH--EFILSLPCGYETLVDD------DLL--SGGQKQRIAIAR------AILRDPAILLLDEATSALDS 620 (695)
Q Consensus 557 eei~~A~~~a~l~--~fI~~LP~G~dT~vge------~~L--SGGQkQRIaIAR------All~~p~ILILDEaTSaLD~ 620 (695)
++..... +.| ++...+. ..+ |+|++|++.++. +++++|+...+|+ ++|+
T Consensus 66 ------~~~~~~~~~~~i------ld~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~ 130 (189)
T 2bdt_A 66 ------TVNFLLAQNDVV------LDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGE 130 (189)
T ss_dssp ------HHHHHHTTCEEE------EESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CG
T ss_pred ------HHHHHhcCCcEE------EeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCH
Confidence 1111000 011 1111121 145 999999999998 9999999888884 7998
Q ss_pred ccchhhhhHHHhhhccccCcceEEEEeee-cccccc-cCeEEEeeCCeEEEeccchhhh
Q 005467 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHR-LSTIKA-VDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 621 ~tE~~I~~~L~~~~~~~~~~~TvIiIaHr-lsti~~-aD~IvvL~~G~Ive~Gth~eLl 677 (695)
+.... .+.+....+ .+.|+|..+|. ++.++. ||+|+ ++|+++..|+.+-|-
T Consensus 131 ~~~~~-~~~~~~~~~---~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 131 RCLEL-VEEFESKGI---DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp GGGHH-HHHHHHTTC---CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HHHHH-HHHHhhcCC---CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 87766 666666532 35799999999 888865 99999 999999999987664
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-16 Score=173.75 Aligned_cols=144 Identities=14% Similarity=0.173 Sum_probs=99.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc----chhHHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD----LDIRWL 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~----i~~~~l 524 (695)
.++++|++|.|+. ..+|+++ +. ++|+.++|+|||||||||++++|+|+++|++|+|.++|.++.. ++...+
T Consensus 143 ~~~l~~Lg~~~~~---~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v 217 (418)
T 1p9r_A 143 RLDLHSLGMTAHN---HDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQV 217 (418)
T ss_dssp CCCGGGSCCCHHH---HHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEEC
T ss_pred CCCHHHcCCCHHH---HHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEE
Confidence 3567777777742 3588888 54 8999999999999999999999999999999999999988742 122234
Q ss_pred Hhhhcccc---------CCceee--e-----eeccccccccCCc-------CCC-chhHHHHHHHhhHhHhHhcCCCCcc
Q 005467 525 REKIGFVG---------QEPQLL--Q-----MDIKSNIMYGCPK-------DVK-NEDIEWAAKQAYVHEFILSLPCGYE 580 (695)
Q Consensus 525 R~~I~~V~---------Qd~~LF--~-----~TI~eNI~~g~~~-------~~~-~eei~~A~~~a~l~~fI~~LP~G~d 580 (695)
++.+++++ |+|.++ . .|+.+|+.++... +.. ..+....+...++.++
T Consensus 218 ~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~--------- 288 (418)
T 1p9r_A 218 NPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF--------- 288 (418)
T ss_dssp BGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH---------
T ss_pred ccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH---------
Confidence 55666654 988753 2 3677777654110 111 1222223333332221
Q ss_pred ccccccccCCccchhHHHHHHhhcCCcEEE
Q 005467 581 TLVDDDLLSGGQKQRIAIARAILRDPAILL 610 (695)
Q Consensus 581 T~vge~~LSGGQkQRIaIARAll~~p~ILI 610 (695)
.-...|||||+|| ||||++.+|++..
T Consensus 289 --~~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 289 --LISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp --HHHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred --HHHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 1113799999999 9999999999975
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-15 Score=166.83 Aligned_cols=184 Identities=17% Similarity=0.160 Sum_probs=114.8
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch----hHH--HHhhhccccCCceee-ee
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRW--LREKIGFVGQEPQLL-QM 540 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~----~~~--lR~~I~~V~Qd~~LF-~~ 540 (695)
-+++||++++|++++|||+|||||||++++|+|++.|++|+|.++|.|..... ... .|+.|+||+|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 35899999999999999999999999999999999999999999988875432 122 377899999998755 56
Q ss_pred eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC-C-cEEEEecccccc
Q 005467 541 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD-P-AILLLDEATSAL 618 (695)
Q Consensus 541 TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~-p-~ILILDEaTSaL 618 (695)
|+++||.++...+.+ -.|-..+...++. .++-.--+||+.++|++..+ | .+|+..+||++.
T Consensus 363 tV~e~l~~a~~~~~D--------------vVLIDTaGrl~~~---~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 363 VIFDAIQAAKARNID--------------VLIADTAGRLQNK---SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp HHHHHHHHHHHTTCS--------------EEEECCCCSCCCH---HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred HHHHHHHHHHhcCCC--------------EEEEeCCCccchh---hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 889999877211111 0011111111111 11111124899999988644 5 355555577776
Q ss_pred CcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEee--CCeEEEeccchhh
Q 005467 619 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVID--DGRIIEVGNHAEL 676 (695)
Q Consensus 619 D~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~--~G~Ive~Gth~eL 676 (695)
|... .++.+.+ .-+.|.+++||==.+.+..+.+-++. +..|...|+-+.+
T Consensus 426 ~al~------~ak~f~~--~~~itgvIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge~v 477 (503)
T 2yhs_A 426 NAVS------QAKLFHE--AVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERI 477 (503)
T ss_dssp HHHH------HHHHHHH--HTCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEEEECSSSG
T ss_pred HHHH------HHHHHHh--hcCCCEEEEEcCCCcccccHHHHHHHHHCCCEEEEecCCCh
Confidence 5542 2222221 12579999999333433343333332 3345555544333
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-16 Score=152.07 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=75.5
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++-+|++++|++ ..+++++||+|++|++++|+||||||||||+++|+|++ |.+|+|.++|.++.+.. ..+ .
T Consensus 8 ~~~~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~--~~~---~ 78 (158)
T 1htw_A 8 IPDEFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY--NIA---G 78 (158)
T ss_dssp ECSHHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE--EET---T
T ss_pred cCCHHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec--cCC---C
Confidence 344566778853 46999999999999999999999999999999999999 99999999999885321 112 3
Q ss_pred cccCCceeeeeecccccc-cc
Q 005467 530 FVGQEPQLLQMDIKSNIM-YG 549 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~-~g 549 (695)
+|+|++.+|.-|+.||+. +|
T Consensus 79 ~~~q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 79 KMIYHFDLYRLADPEELEFMG 99 (158)
T ss_dssp EEEEEEECTTCSCTTHHHHST
T ss_pred cceeccccccCCcHHHHHHcC
Confidence 799999988889999994 46
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-15 Score=160.62 Aligned_cols=121 Identities=19% Similarity=0.172 Sum_probs=78.9
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc-CCCceEEEc-CccCCcchhHHHHhhhccccCCceeeee-ec
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-PSDGQIYID-GFPLTDLDIRWLREKIGFVGQEPQLLQM-DI 542 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-p~~G~I~id-G~di~~i~~~~lR~~I~~V~Qd~~LF~~-TI 542 (695)
.-++++++. .+|++++|+||||||||||+|+|+|+.. |..|+|.++ |.+.. ...++.+++++|++.+++. ++
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 357888885 4799999999999999999999999999 999999997 76643 2345679999999998865 89
Q ss_pred cccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhh
Q 005467 543 KSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 543 ~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll 603 (695)
+++-.. +.+.+++.+ .+.++++.+ |+.-..+. .+|| ||+||+|||++++
T Consensus 279 ~e~~l~----~l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 279 REFGLW----HLEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HTCCCC----CCCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHhhhc----CCCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 987432 234444322 223333322 22211111 2689 9999999999864
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-14 Score=151.82 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=78.9
Q ss_pred EEEEEeecCCChhhHHHHHHh-hhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNED 558 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r-ly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~ee 558 (695)
.+.|+||+|+||||+++.++| ++.|..|+|.++|.++..... -+..+++++|+.++.-.. -..+ ....+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITP----SDMG---NNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECC----C-------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecH----hhcC---CcchHH
Confidence 499999999999999999999 899999999999988764332 267899999998753211 0111 001112
Q ss_pred HHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhcccc
Q 005467 559 IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638 (695)
Q Consensus 559 i~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~ 638 (695)
+.+.++.+ .... +++..+ .||| +..+|+++|||||++ ||.++...+.+.+++. .
T Consensus 109 ~~~~i~~~-----~~~~--~~~~~~---~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~----~ 162 (354)
T 1sxj_E 109 IQELLKEV-----AQME--QVDFQD---SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY----S 162 (354)
T ss_dssp HHHHHHHH-----TTTT--C--------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS----T
T ss_pred HHHHHHHH-----HHhc--cccccc---cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh----c
Confidence 33332222 1111 111111 4676 778999999999999 9999999888888875 3
Q ss_pred CcceEEEEeeecccc
Q 005467 639 TKRTVIVIAHRLSTI 653 (695)
Q Consensus 639 ~~~TvIiIaHrlsti 653 (695)
.+.++|++||+++.+
T Consensus 163 ~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPI 177 (354)
T ss_dssp TTEEEEEEESCSCSS
T ss_pred CCCEEEEEeCCHHHH
Confidence 458999999998754
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-14 Score=154.73 Aligned_cols=165 Identities=16% Similarity=0.137 Sum_probs=106.3
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch----hHHHHhhhc--cccCCceeee-eeccccc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD----IRWLREKIG--FVGQEPQLLQ-MDIKSNI 546 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~----~~~lR~~I~--~V~Qd~~LF~-~TI~eNI 546 (695)
..++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... ...++++++ +++|+..++. .+++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 45789999999999999999999999999999999999999987654 234566666 8999887774 5788888
Q ss_pred cccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchh
Q 005467 547 MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHY 625 (695)
Q Consensus 547 ~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~ 625 (695)
.++...+.+ .+ .++. +...+....- ..|| .++|++..++++++||.+|. +.
T Consensus 205 ~~~~~~~~d--~v-----------liDt-aG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-------~~ 256 (328)
T 3e70_C 205 QHAKARGID--VV-----------LIDT-AGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-------NA 256 (328)
T ss_dssp HHHHHHTCS--EE-----------EEEE-CCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-------TH
T ss_pred HHHHhccch--hh-----------HHhh-ccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-------HH
Confidence 765210000 00 0111 1100000000 1233 48999988888888885554 23
Q ss_pred hhhHHHhhhccccCcceEEEEeeeccccc----------ccCeEEEeeCCeEE
Q 005467 626 VKGVLHALRNDCKTKRTVIVIAHRLSTIK----------AVDRIVVIDDGRII 668 (695)
Q Consensus 626 I~~~L~~~~~~~~~~~TvIiIaHrlsti~----------~aD~IvvL~~G~Iv 668 (695)
+.+.++.+.+ ..+.|.|++||--.+.+ ..-.|..+..|+-+
T Consensus 257 ~~~~~~~~~~--~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 257 IVEQARQFNE--AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHHHHHH--HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHHHHHH--hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 3344444322 13579999999543321 13467777777654
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-13 Score=149.04 Aligned_cols=149 Identities=14% Similarity=0.196 Sum_probs=100.3
Q ss_pred EeecCcEEEEEeecCCChhhHHHHH--HhhhcCCCc-----eEEEcCccC-CcchhHHHHhhhccccCCceeeeeecccc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLL--LRLYEPSDG-----QIYIDGFPL-TDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL--~rly~p~~G-----~I~idG~di-~~i~~~~lR~~I~~V~Qd~~LF~~TI~eN 545 (695)
-|++|++++|+||||||||||++.+ .+..+|+.| .|++|+.+. +......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 5899999999999999999999944 566666444 899999873 33445556778898776 57789
Q ss_pred ccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh--hcCCcEEEEeccccccCcccc
Q 005467 546 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI--LRDPAILLLDEATSALDSESE 623 (695)
Q Consensus 546 I~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl--l~~p~ILILDEaTSaLD~~tE 623 (695)
+.+.. ..+.++..+.++. ++++ -.+|+++|+||+|+.+|.+..
T Consensus 247 i~~~~--~~~~~~~~~~l~~---------------------------------~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYAR--AYNADHQLRLLDA---------------------------------AAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEE--CCSHHHHHHHHHH---------------------------------HHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEec--cCChHHHHHHHHH---------------------------------HHHHHHhcCCceEEecchhhhCchhhc
Confidence 88873 2222222222111 1111 147999999999999998654
Q ss_pred ------------hhhhhHHHhhhccccCcceEEEEeeeccc-------------------ccc-cCeEEEeeCCe
Q 005467 624 ------------HYVKGVLHALRNDCKTKRTVIVIAHRLST-------------------IKA-VDRIVVIDDGR 666 (695)
Q Consensus 624 ------------~~I~~~L~~~~~~~~~~~TvIiIaHrlst-------------------i~~-aD~IvvL~~G~ 666 (695)
..+.+.|.++.+. .|.|||+|+|-.+. +.+ ||.+++|++|+
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake--~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQ--FGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHH--HCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHH--cCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 4566666666432 46899999997321 233 89999999764
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-15 Score=153.50 Aligned_cols=180 Identities=12% Similarity=0.158 Sum_probs=90.4
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHH-hhh------------cCCCceEEEcCccCCcchhHHHHhhhcccc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLY------------EPSDGQIYIDGFPLTDLDIRWLREKIGFVG 532 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~-rly------------~p~~G~I~idG~di~~i~~~~lR~~I~~V~ 532 (695)
...+++||++++|++++|+|||||||||++++|+ |++ +|..|++ +|.++...+...+... ..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hh
Confidence 4678999999999999999999999999999999 999 8888887 8887776666666543 34
Q ss_pred CCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhH-HHHH-HhhcCCcEEE
Q 005467 533 QEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI-AIAR-AILRDPAILL 610 (695)
Q Consensus 533 Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRI-aIAR-All~~p~ILI 610 (695)
++..++..++.+|+ ||. + .+++.++++... ..+..++ .-|...+ +++. .-++ .++..|+..+
T Consensus 90 ~~~~~~~~~~~~~~-~~~-~---~~~i~~~~~~~~--~vild~~-----~~g~~~~----~~~~~~~~~~v~v~~~~~~~ 153 (231)
T 3lnc_A 90 NGEIIEHAEVFGNF-YGV-P---RKNLEDNVDKGV--STLLVID-----WQGAFKF----MEMMREHVVSIFIMPPSMEE 153 (231)
T ss_dssp TTCEEEEEEETTEE-EEE-E---CTTHHHHHHHTC--EEEEECC-----HHHHHHH----HHHSGGGEEEEEEECSCHHH
T ss_pred cCceehhhhhcccc-CCC-C---HHHHHHHHHcCC--eEEEEcC-----HHHHHHH----HHhcCCCeEEEEEECCcHHH
Confidence 67778888888886 562 2 334555444321 1111111 0011111 4454 3233 4567888889
Q ss_pred EeccccccCcccchhhhhHHHhhhccc--cCcceEEEEeeecccc-cccCeEEEeeCCe
Q 005467 611 LDEATSALDSESEHYVKGVLHALRNDC--KTKRTVIVIAHRLSTI-KAVDRIVVIDDGR 666 (695)
Q Consensus 611 LDEaTSaLD~~tE~~I~~~L~~~~~~~--~~~~TvIiIaHrlsti-~~aD~IvvL~~G~ 666 (695)
+||.+++.|..+++.+.+.|.+..... ....+.+++.|.++.+ +..++++-.++++
T Consensus 154 l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~ 212 (231)
T 3lnc_A 154 LRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMK 212 (231)
T ss_dssp HHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhc
Confidence 999999999999998888776653210 1123444445544332 2344444333343
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-15 Score=153.86 Aligned_cols=141 Identities=16% Similarity=0.127 Sum_probs=95.3
Q ss_pred cCcEEEEEeecCCChhhHHHHHH---hhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeee-eeccccccccC--
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYGC-- 550 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~---rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~-- 550 (695)
++++++|+|||||||||++++|+ |+..|+.|+|.++|.+.. ..+...++.++|+..++. .++.+|+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999886532 234566777788776554 57888875420
Q ss_pred ---C----cCCCchhHHHHHHHhhHhHhHhcCCCC---cc-------ccccc---cccCCccchhHHHHHHh-hcCCcEE
Q 005467 551 ---P----KDVKNEDIEWAAKQAYVHEFILSLPCG---YE-------TLVDD---DLLSGGQKQRIAIARAI-LRDPAIL 609 (695)
Q Consensus 551 ---~----~~~~~eei~~A~~~a~l~~fI~~LP~G---~d-------T~vge---~~LSGGQkQRIaIARAl-l~~p~IL 609 (695)
. ......+ .++.... .. ..|+- ++ ..+.. ..||| |+ ||+ +.+|+++
T Consensus 102 ~~~~~~il~g~~~~~-~~~~~l~---~~--~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTL-GQAEALD---KI--CEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp CTTSCEEEESCCCSH-HHHHHHH---TT--CCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSST
T ss_pred cCCCeEEEECCCCCH-HHHHHHH---hh--cCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccc
Confidence 0 0011111 1111100 00 01110 00 11111 26898 66 888 9999999
Q ss_pred EEe----ccccccCcccchhhhhHHHhhh
Q 005467 610 LLD----EATSALDSESEHYVKGVLHALR 634 (695)
Q Consensus 610 ILD----EaTSaLD~~tE~~I~~~L~~~~ 634 (695)
+|| |||++||..+++.+.+.+.+..
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHH
Confidence 999 9999999999999999888764
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-14 Score=150.28 Aligned_cols=127 Identities=17% Similarity=0.170 Sum_probs=96.6
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCc-eee-eeecc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEP-QLL-QMDIK 543 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~-~LF-~~TI~ 543 (695)
.+++++++++++| ++|+||+|||||||++.|++.+.+ |.|.++|.++.+......++.+++++|+. ..+ .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 5899999999999 999999999999999999999987 89999999987766667788999999986 333 34678
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCcEEEEecccc
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATS 616 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ILILDEaTS 616 (695)
|||..... ....++. + .....+.. ..|||||+||..||+|+..+|++| |||+.
T Consensus 110 Deid~~~~-~r~~~~~-------~----------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 110 DEVDALCP-RRSDRET-------G----------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp ETCTTTCC---------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred ehhhhhhc-ccCCCcc-------h----------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 88876421 1111110 0 00111122 269999999999999999999975 99986
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-13 Score=146.73 Aligned_cols=73 Identities=26% Similarity=0.434 Sum_probs=66.0
Q ss_pred ccCCccchhH------HHHHHhhcC-CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeE
Q 005467 587 LLSGGQKQRI------AIARAILRD-PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRI 659 (695)
Q Consensus 587 ~LSGGQkQRI------aIARAll~~-p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~I 659 (695)
.|||||+||+ |+|||+..+ |++|||||||++||+++...+.+.|.++. .++|||+|||++.....||++
T Consensus 280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~----~~~~vi~~th~~~~~~~~d~~ 355 (371)
T 3auy_A 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK----SIPQMIIITHHRELEDVADVI 355 (371)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC----SCSEEEEEESCGGGGGGCSEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc----cCCeEEEEEChHHHHhhCCEE
Confidence 7999999987 678999999 99999999999999999999999998863 236999999999866779999
Q ss_pred EEee
Q 005467 660 VVID 663 (695)
Q Consensus 660 vvL~ 663 (695)
++|+
T Consensus 356 ~~l~ 359 (371)
T 3auy_A 356 INVK 359 (371)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.6e-13 Score=125.09 Aligned_cols=92 Identities=18% Similarity=0.324 Sum_probs=70.4
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCc--eEEEcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G--~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56666 8999999999999999999999999987 57 666666543221
Q ss_pred cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccch
Q 005467 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEH 624 (695)
Q Consensus 545 NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~ 624 (695)
+++.+|++|||||+++ +|...++
T Consensus 79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 2367899999999998 6665577
Q ss_pred hhhhHHHhhhccccCcce-EEEEeee
Q 005467 625 YVKGVLHALRNDCKTKRT-VIVIAHR 649 (695)
Q Consensus 625 ~I~~~L~~~~~~~~~~~T-vIiIaHr 649 (695)
.+.+.+.+..+ +|+| +|++||+
T Consensus 102 ~l~~li~~~~~---~g~~~iiits~~ 124 (149)
T 2kjq_A 102 LLFSIFNRFRN---SGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHH---HTCCEEEEEESS
T ss_pred HHHHHHHHHHH---cCCcEEEEECCC
Confidence 77777776643 3577 6666664
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-14 Score=150.95 Aligned_cols=140 Identities=17% Similarity=0.234 Sum_probs=96.5
Q ss_pred cccceEEEEEEeeecCCCCccceeeeeeeEe-------------------ecCcEEEEEeecCCChhhHHHHHHhhhc--
Q 005467 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTI-------------------EANEVVAIVGLSGSGKSTFVNLLLRLYE-- 503 (695)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I-------------------~~Ge~vAIVG~SGSGKSTLl~LL~rly~-- 503 (695)
..++.|+++||++.|. ++++++|+++ ++|+++||+|||||||||++++|.|++.
T Consensus 33 ~~~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~ 107 (308)
T 1sq5_A 33 GINEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRW 107 (308)
T ss_dssp HHCTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred CCccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhC
Confidence 3456799999999993 5999999998 8999999999999999999999999999
Q ss_pred CCCceEEE---cCccCCcchhHHHHhhhccccCCceee-eeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCc
Q 005467 504 PSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY 579 (695)
Q Consensus 504 p~~G~I~i---dG~di~~i~~~~lR~~I~~V~Qd~~LF-~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~ 579 (695)
|++|+|.+ ||.+.. ...++.+|+| |+..++ .-|+.+|+.+. ..+..|-
T Consensus 108 ~~~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~-----------------------~~l~~~~ 159 (308)
T 1sq5_A 108 PEHRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFV-----------------------SDLKSGV 159 (308)
T ss_dssp TTCCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHH-----------------------HHHTTTC
T ss_pred CCCCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHH-----------------------HHHhCCC
Confidence 99999999 997752 2356789999 764332 12333333221 1111121
Q ss_pred ccc-ccccccCCccchhHHHHHHhhcCCcEEEEeccccccC
Q 005467 580 ETL-VDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619 (695)
Q Consensus 580 dT~-vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD 619 (695)
+.. .-.-..+.+ +|++.+.+.+.+|+++|+|.+....|
T Consensus 160 ~~i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 160 PNVTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp SCEEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred Cceeccccccccc--CcccccceecCCCCEEEECchhhCCC
Confidence 100 000122332 45554456667899999999988776
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-13 Score=145.01 Aligned_cols=117 Identities=17% Similarity=0.125 Sum_probs=79.7
Q ss_pred eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE---cCccCCcchhHHHHhhhccccCCceee------eeecc
Q 005467 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQLL------QMDIK 543 (695)
Q Consensus 473 l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i---dG~di~~i~~~~lR~~I~~V~Qd~~LF------~~TI~ 543 (695)
+++.+|++++|+||||||||||+|.|. +.+|.+|+|.+ +|.++........++.+|+|+|+|.+. +-|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 455679999999999999999999999 99999999999 998886543221123799999999553 4578
Q ss_pred ccc--ccc-----------C-CcCCCchhHHHHHHHhhHhH-hHhcCCCCccccccccccCCccchhHHHHH
Q 005467 544 SNI--MYG-----------C-PKDVKNEDIEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 544 eNI--~~g-----------~-~~~~~~eei~~A~~~a~l~~-fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
||+ .++ | ..+...+.+.++++..++.+ ..++.| ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~---------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL---------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH---------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH---------HHHHHHHHHHHHHhc
Confidence 898 443 1 01112345777777777754 333322 258998888899998
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.2e-13 Score=128.95 Aligned_cols=113 Identities=16% Similarity=0.216 Sum_probs=76.3
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCC
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCP 551 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~ 551 (695)
+|++++|+.++|+||+|||||||++.+++.+.|.+|...+. +
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~-----------------------------------~--- 73 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-----------------------------------F--- 73 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE-----------------------------------E---
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE-----------------------------------E---
Confidence 56788999999999999999999999999998777632110 0
Q ss_pred cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEecccc-ccCcccchhhhhHH
Q 005467 552 KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGVL 630 (695)
Q Consensus 552 ~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTS-aLD~~tE~~I~~~L 630 (695)
+-+++.+.+..+ ++.++.+ -+...+.+|++||||||++ ++|+.....+.+.+
T Consensus 74 ---~~~~~~~~~~~~---------------------~~~~~~~---~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll 126 (180)
T 3ec2_A 74 ---DTKDLIFRLKHL---------------------MDEGKDT---KFLKTVLNSPVLVLDDLGSERLSDWQRELISYII 126 (180)
T ss_dssp ---EHHHHHHHHHHH---------------------HHHTCCS---HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred ---EHHHHHHHHHHH---------------------hcCchHH---HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 001111111100 0111111 1223356999999999996 89998888888877
Q ss_pred HhhhccccCcceEEEEeeeccc
Q 005467 631 HALRNDCKTKRTVIVIAHRLST 652 (695)
Q Consensus 631 ~~~~~~~~~~~TvIiIaHrlst 652 (695)
....+ +++|+|++||+...
T Consensus 127 ~~~~~---~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 127 TYRYN---NLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHH---TTCEEEEECCCCSC
T ss_pred HHHHH---cCCCEEEEcCCChh
Confidence 76542 46899999998754
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-13 Score=138.34 Aligned_cols=134 Identities=15% Similarity=0.162 Sum_probs=101.7
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh---cCCCceEEE--------cCccCC-cchhHHHHhhhccccCCceeeeeeccc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQIYI--------DGFPLT-DLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly---~p~~G~I~i--------dG~di~-~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
.+.+++|+|||||||||++++|.+.| .++.|++.. +|.++. +....++++++++++|++........+
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999988 788999988 788876 467788999999999986322222222
Q ss_pred cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc--c-ccCCccchhHHHHHHhhcCCcEEEEeccccc
Q 005467 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD--D-LLSGGQKQRIAIARAILRDPAILLLDEATSA 617 (695)
Q Consensus 545 NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge--~-~LSGGQkQRIaIARAll~~p~ILILDEaTSa 617 (695)
+..+. ....++++..++..+.+++++.....+.++.+.. . -++|+ .++++++++++++|+++++..
T Consensus 84 ~~~v~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~e 152 (227)
T 1cke_A 84 GEDVS--GEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASSE 152 (227)
T ss_dssp TEECH--HHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCHH
T ss_pred CeeCc--hhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCHH
Confidence 22221 1234678999999999999999887777766642 2 57877 466788899999999887543
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-12 Score=143.28 Aligned_cols=153 Identities=18% Similarity=0.223 Sum_probs=97.9
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccccc
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 547 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~ 547 (695)
-++++|++++|+.++|||++|||||||++.|++..+ .+.+.+...++ ..+++|.|+.. ..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl~-----p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTLS-----PNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSSC-----CEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccceec-----ceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999853 45665554443 35788887651 2234555544
Q ss_pred ccCCcCCCc-----hhHHHHHHHhhHhHhHhcCCCCccccccc--cccCCccchhHHHHHHhhcCCcEEEEeccccccCc
Q 005467 548 YGCPKDVKN-----EDIEWAAKQAYVHEFILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620 (695)
Q Consensus 548 ~g~~~~~~~-----eei~~A~~~a~l~~fI~~LP~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~ 620 (695)
+.. .+.+ .+..+..+. ++..+.-+ |-. .+ ..||+||+||.++||++..+|.||++ +.+|.
T Consensus 215 li~--~a~~~~~L~~~fl~~~er--a~~lL~vv----Dls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl 281 (416)
T 1udx_A 215 IIE--GASEGKGLGLEFLRHIAR--TRVLLYVL----DAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDL 281 (416)
T ss_dssp CCC--CGGGSCCSCHHHHHHHTS--SSEEEEEE----ETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTT
T ss_pred ccc--chhhhhhhhHHHHHHHHH--HHhhhEEe----CCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCCh
Confidence 321 1111 111111111 11111111 110 11 37999999999999999999999999 99999
Q ss_pred ccchhhhhHHHhhhccccCcceEEEEee
Q 005467 621 ESEHYVKGVLHALRNDCKTKRTVIVIAH 648 (695)
Q Consensus 621 ~tE~~I~~~L~~~~~~~~~~~TvIiIaH 648 (695)
.++ ...+.+.+..+ ..+.+++.||-
T Consensus 282 ~~~-~~~~~l~~~l~--~~g~~vi~iSA 306 (416)
T 1udx_A 282 LEE-EAVKALADALA--REGLAVLPVSA 306 (416)
T ss_dssp SCH-HHHHHHHHHHH--TTTSCEEECCT
T ss_pred hhH-HHHHHHHHHHH--hcCCeEEEEEC
Confidence 876 33444443322 13567877764
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-11 Score=122.38 Aligned_cols=155 Identities=15% Similarity=0.141 Sum_probs=95.6
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeee-eccccccccC
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM-DIKSNIMYGC 550 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~-TI~eNI~~g~ 550 (695)
|+++++|++++|+||||||||||+++|+|+++ .+.++|.++........++.++|++|++.+|.. +..+|+....
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 67889999999999999999999999999974 688888877665555557789999999988764 5556654321
Q ss_pred C-----cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccc--------cc
Q 005467 551 P-----KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEAT--------SA 617 (695)
Q Consensus 551 ~-----~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaT--------Sa 617 (695)
. .....+++.++++. |... +-.+..|-+.-++..+.++.+++++.|. .+
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~------------g~~v------i~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~ 138 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKA------------GRDV------LLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIK 138 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHT------------TCEE------EEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHT
T ss_pred eeecccccchHHHHHHHHHc------------CCeE------EEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHH
Confidence 0 00112233333322 2111 1224455566666677777777776652 23
Q ss_pred cCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEE
Q 005467 618 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV 661 (695)
Q Consensus 618 LD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~Ivv 661 (695)
-|.+++..+.+.+.+.... ......||.|++
T Consensus 139 R~~~~~~~i~~rl~~~~~~-------------~~~~~~~d~vi~ 169 (205)
T 3tr0_A 139 RRQDDTAIIEQRLALAREE-------------MAHYKEFDYLVV 169 (205)
T ss_dssp CTTSCSSTHHHHHHHHHHH-------------HTTGGGCSEEEE
T ss_pred hCCCCHHHHHHHHHHHHHH-------------HhcccCCCEEEE
Confidence 3555666666666554221 122356888776
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-11 Score=129.12 Aligned_cols=113 Identities=16% Similarity=0.269 Sum_probs=81.3
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccccccc
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 549 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g 549 (695)
.++++.++|++++|+|++||||||++..|++++.+++|+|.+.+.|..... .
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~---------a------------------- 147 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA---------A------------------- 147 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH---------H-------------------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH---------H-------------------
Confidence 346667899999999999999999999999999999999999887753211 0
Q ss_pred CCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhH---HHHHHhhcCCcEEEEeccccccCcccchhh
Q 005467 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRI---AIARAILRDPAILLLDEATSALDSESEHYV 626 (695)
Q Consensus 550 ~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRI---aIARAll~~p~ILILDEaTSaLD~~tE~~I 626 (695)
.+++...++..++ | . + ...|||+.|++ +++||+.++|+++|+|||.. ..+...+
T Consensus 148 ------~eqL~~~~~~~gl-------~----~-~--~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l 204 (306)
T 1vma_A 148 ------IEQLKIWGERVGA-------T----V-I--SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNL 204 (306)
T ss_dssp ------HHHHHHHHHHHTC-------E----E-E--CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHH
T ss_pred ------HHHHHHHHHHcCC-------c----E-E--ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHH
Confidence 0222222332222 1 0 1 14589999999 99999999999999999973 4445555
Q ss_pred hhHHHhh
Q 005467 627 KGVLHAL 633 (695)
Q Consensus 627 ~~~L~~~ 633 (695)
++.+.++
T Consensus 205 ~~eL~~l 211 (306)
T 1vma_A 205 MEELRKV 211 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.17 E-value=7.3e-13 Score=137.79 Aligned_cols=139 Identities=16% Similarity=0.156 Sum_probs=102.0
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcc
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (695)
+++++...|.+ ..+++++++++++| ++|+||+|||||||++.|++... .|.|.++|.++.+......++.++.
T Consensus 51 ~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 45666777743 35899999999999 99999999999999999999986 8999999988766555566778899
Q ss_pred ccCCce-ee-eeeccccc-cccCCcCC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 531 VGQEPQ-LL-QMDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 531 V~Qd~~-LF-~~TI~eNI-~~g~~~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
++|+.. .+ .-++.||| .++..... ..++..+.+ .+++ ..|||||+||..+|+|+.
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll-------------~~lsgg~~~~~~i~~a~t 185 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL-------------VEMDGFEKDTAIVVMAAT 185 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHH-------------HHHTTCCTTCCEEEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHH-------------HHHhCCCCCCCEEEEEec
Confidence 999864 33 34678898 45421110 112221111 1122 248999999999999999
Q ss_pred cCCcEEEEecccc
Q 005467 604 RDPAILLLDEATS 616 (695)
Q Consensus 604 ~~p~ILILDEaTS 616 (695)
.+|++ ||++.-
T Consensus 186 ~~p~~--ld~~l~ 196 (278)
T 1iy2_A 186 NRPDI--LDPALL 196 (278)
T ss_dssp SCTTS--SCHHHH
T ss_pred CCchh--CCHhHc
Confidence 99987 788864
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.8e-12 Score=131.73 Aligned_cols=106 Identities=19% Similarity=0.160 Sum_probs=80.6
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHH---hhhcCCCceEE--------EcCccCC-cchhHHHHhhhccccCC
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL---RLYEPSDGQIY--------IDGFPLT-DLDIRWLREKIGFVGQE 534 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~---rly~p~~G~I~--------idG~di~-~i~~~~lR~~I~~V~Qd 534 (695)
++++.+ ++|++++|+|||||||||++++|+ |++.|++|.|. .+|.++. ......+++.+++++|+
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 99999999999 9999984 55678899999999964
Q ss_pred ------ceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccc
Q 005467 535 ------PQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLV 583 (695)
Q Consensus 535 ------~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~v 583 (695)
.+++..++.+||+ .+++..++..+..++.+.+....+...+
T Consensus 96 ~~~~~~~~l~~~~v~~~i~--------~~~v~~~~s~~~~~~~vr~~l~~~~~~~ 142 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIR--------TETVGNTASQAAAFPRVREALLRRQRAF 142 (252)
T ss_dssp ETTEEEEEETTEECTTGGG--------SHHHHHHHHHHTTSHHHHHHHHHHHHTT
T ss_pred CCCCceEEECCeehhHHHH--------HHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 5566778887765 3456666777777777665554444443
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-11 Score=127.68 Aligned_cols=142 Identities=17% Similarity=0.147 Sum_probs=96.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
+.++++++.|+.. . ++++|+ +|++++++|++||||||++..|++++.+..|+|.+.+.|++.-...+ +..
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~---ql~ 146 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE---QLR 146 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH---HHH
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH---HHH
Confidence 6678888999532 2 688998 99999999999999999999999999999999999998876422111 000
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEE
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~IL 609 (695)
..++..++. -+|.|.+ -.-.+-||.+|+++...+++++
T Consensus 147 -------------------------------~~~~~~~l~----~~~~~~~-------~~p~~l~~~~l~~~~~~~~D~v 184 (295)
T 1ls1_A 147 -------------------------------LLGEKVGVP----VLEVMDG-------ESPESIRRRVEEKARLEARDLI 184 (295)
T ss_dssp -------------------------------HHHHHHTCC----EEECCTT-------CCHHHHHHHHHHHHHHHTCCEE
T ss_pred -------------------------------HhcccCCeE----EEEcCCC-------CCHHHHHHHHHHHHHhCCCCEE
Confidence 001111110 1111100 0111236889999988999999
Q ss_pred EEecc-ccccCcccchhhhhHHHhhhccccCcceEEEEe
Q 005467 610 LLDEA-TSALDSESEHYVKGVLHALRNDCKTKRTVIVIA 647 (695)
Q Consensus 610 ILDEa-TSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIa 647 (695)
|+||| ++++|...-.++.+..+... .+.+++++.
T Consensus 185 iiDtpp~~~~d~~~~~~l~~~~~~~~----~~~~~lv~~ 219 (295)
T 1ls1_A 185 LVDTAGRLQIDEPLMGELARLKEVLG----PDEVLLVLD 219 (295)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHC----CSEEEEEEE
T ss_pred EEeCCCCccccHHHHHHHHHHhhhcC----CCEEEEEEe
Confidence 99999 99999876666665555442 335555554
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=9.4e-13 Score=134.84 Aligned_cols=141 Identities=16% Similarity=0.148 Sum_probs=102.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
.+++++.+.|.+ ..+++++++++++| ++|+||+|||||||++.+++... .|.|.++|.++.+......++.++
T Consensus 26 ~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 356677777743 35899999999999 99999999999999999999986 899999998876555555677888
Q ss_pred cccCCce-ee-eeeccccc-cccCCcCC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHh
Q 005467 530 FVGQEPQ-LL-QMDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAI 602 (695)
Q Consensus 530 ~V~Qd~~-LF-~~TI~eNI-~~g~~~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAl 602 (695)
.++|+.. .+ .-++.||| .++..... ..++..+.+ .+++ ..|||||+||..+|+|+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll-------------~~l~g~~~~~~~i~~a~ 160 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL-------------VEMDGFEKDTAIVVMAA 160 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHH-------------HHHHTCCTTCCEEEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHH-------------HHHhCCCCCCCEEEEEc
Confidence 8888764 33 35678888 55521110 112211111 1121 25899999999999999
Q ss_pred hcCCcEEEEeccccc
Q 005467 603 LRDPAILLLDEATSA 617 (695)
Q Consensus 603 l~~p~ILILDEaTSa 617 (695)
..+|++ ||++.-.
T Consensus 161 t~~p~~--ld~~l~r 173 (254)
T 1ixz_A 161 TNRPDI--LDPALLR 173 (254)
T ss_dssp ESCGGG--SCGGGGS
T ss_pred cCCchh--CCHHHcC
Confidence 999987 7888753
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.14 E-value=5.7e-12 Score=132.89 Aligned_cols=103 Identities=15% Similarity=0.109 Sum_probs=69.5
Q ss_pred eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE---cCccCCcchhHHHHhhhccccCCce-------------
Q 005467 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQ------------- 536 (695)
Q Consensus 473 l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i---dG~di~~i~~~~lR~~I~~V~Qd~~------------- 536 (695)
|++.+|++++|+||||||||||+++|.|+..|++|+|.+ +|.++.........+.+|+|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 567789999999999999999999999999999999999 9988865442211246899999985
Q ss_pred ---eee-eeccccccccCC--cCCCchhHHHHHHHhhHh-HhHhcCC
Q 005467 537 ---LLQ-MDIKSNIMYGCP--KDVKNEDIEWAAKQAYVH-EFILSLP 576 (695)
Q Consensus 537 ---LF~-~TI~eNI~~g~~--~~~~~eei~~A~~~a~l~-~fI~~LP 576 (695)
+|. -|+ +|++++.. ....++++.++++..++. +..++.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 353 478 99998521 122346788899999884 5555544
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-11 Score=120.77 Aligned_cols=72 Identities=24% Similarity=0.347 Sum_probs=63.7
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhc-------------CCCceEEEcCccCCcchhHHHHhhhccccCCceee
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE-------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL 538 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~-------------p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF 538 (695)
|+...+|+.++|+||||||||||++.|++.++ |..|+ +||+++.-++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34445899999999999999999999999997 78898 699999999999999876 6999999
Q ss_pred eeecccccccc
Q 005467 539 QMDIKSNIMYG 549 (695)
Q Consensus 539 ~~TI~eNI~~g 549 (695)
.+++.+| .||
T Consensus 88 ~~~~~~n-~YG 97 (197)
T 3ney_A 88 FGSYQGN-MFG 97 (197)
T ss_dssp EEEETTE-EEE
T ss_pred hhhhhce-ecc
Confidence 9999999 589
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=7.8e-11 Score=114.40 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=63.1
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcC-CCceEE----------EcCccCCcchhHHHHhhhccccCCceeeeeecccc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIY----------IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G~I~----------idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eN 545 (695)
+|++++|+||||||||||+++|++++++ ..|.|. +||.++..++.+.+++. +.|+.+++.+++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 6999999999999999999999999873 344443 48888888888888774 578999999999999
Q ss_pred ccccCCcCCCchhHHHHHH
Q 005467 546 IMYGCPKDVKNEDIEWAAK 564 (695)
Q Consensus 546 I~~g~~~~~~~eei~~A~~ 564 (695)
.||. + .+++.++++
T Consensus 81 -~yg~-~---~~~i~~~l~ 94 (180)
T 1kgd_A 81 -MYGT-K---LETIRKIHE 94 (180)
T ss_dssp -EEEE-E---HHHHHHHHH
T ss_pred -cccc-c---HHHHHHHHH
Confidence 6773 2 344554443
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8.5e-12 Score=139.82 Aligned_cols=164 Identities=16% Similarity=0.205 Sum_probs=101.5
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHh--hhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccccc
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 547 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r--ly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~ 547 (695)
.+++++.++..++|.|+|||||||+++.|.. +|.++.|++.+.+.|.+......+. .=||++ +++.+|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~-------~lPhl~-~~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE-------GIPHLL-TEVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT-------TCTTBS-SSCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc-------cCCccc-ceeecCHH
Confidence 4788889999999999999999999999887 7888889999888887764433322 113332 12333322
Q ss_pred ccCCcCC--CchhHHHHHHHhhHhHhHhcCCCCccccccc-----cccCCccchhH----------HHHHHhhcCCc-EE
Q 005467 548 YGCPKDV--KNEDIEWAAKQAYVHEFILSLPCGYETLVDD-----DLLSGGQKQRI----------AIARAILRDPA-IL 609 (695)
Q Consensus 548 ~g~~~~~--~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-----~~LSGGQkQRI----------aIARAll~~p~-IL 609 (695)
.+ .... -.+|+.+- .+.... .|....-+. ..+||||+||. ++||++-..|. ++
T Consensus 231 ~a-~~~L~~~~~EmerR------~~ll~~--~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 231 DA-ANALRWCVNEMERR------YKLMSA--LGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HH-HHHHHHHHHHHHHH------HHHHHH--TTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HH-HHHHHHHHHHHHHH------HHHHHH--cCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 11 0000 00111110 111111 122222111 15899999974 46778888898 78
Q ss_pred EEeccccccCcccchhhhhHHHhhh-ccccCcceEEEEeeecc
Q 005467 610 LLDEATSALDSESEHYVKGVLHALR-NDCKTKRTVIVIAHRLS 651 (695)
Q Consensus 610 ILDEaTSaLD~~tE~~I~~~L~~~~-~~~~~~~TvIiIaHrls 651 (695)
++||+++.+|.. ...+.+.+.++. .+...|-++|++|||++
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999999843 344555555543 22234789999999998
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-11 Score=118.38 Aligned_cols=141 Identities=20% Similarity=0.150 Sum_probs=85.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcC-----------CCceEEEcCccCCc--chhHHHHhhhccccCCceee--eeeccc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEP-----------SDGQIYIDGFPLTD--LDIRWLREKIGFVGQEPQLL--QMDIKS 544 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p-----------~~G~I~idG~di~~--i~~~~lR~~I~~V~Qd~~LF--~~TI~e 544 (695)
+++|+|++|||||||++.+.|...| .+|+|.++|.++.- +|....++..++++|...-. .-++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6999999999999999999998765 57999999976642 33333333445544422100 012223
Q ss_pred cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCc-ccccccc-ccCCccchhHHHHHHhhcCCcEEEEeccccccCccc
Q 005467 545 NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDD-LLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622 (695)
Q Consensus 545 NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~-dT~vge~-~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~t 622 (695)
+.... +.+++....+. +.+. -+.+. --.++.. .|..-..+...+||++.++|+++++| |||+|.++
T Consensus 111 ~~~~~-----s~~~~~~~~~~--~~~~---~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~ 178 (191)
T 1oix_A 111 IAKHL-----TYENVERWLKE--LRDH---ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTN 178 (191)
T ss_dssp TTCHH-----HHHTHHHHHHH--HHHH---SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTT
T ss_pred CcCHH-----HHHHHHHHHHH--HHHh---cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCC
Confidence 22111 11222211111 1110 11111 1123443 56554556789999999999999999 99999999
Q ss_pred chhhhhHHHh
Q 005467 623 EHYVKGVLHA 632 (695)
Q Consensus 623 E~~I~~~L~~ 632 (695)
...+.+.|.+
T Consensus 179 v~~l~~~l~~ 188 (191)
T 1oix_A 179 VEAAFQTILT 188 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888877754
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=6.1e-11 Score=132.01 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=56.2
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchh
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDI 521 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~ 521 (695)
++.+++... ..+|+|+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++.+.+.
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 355555432 2489999999999 9999999999999999999999999999999999999976553
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.1e-10 Score=113.75 Aligned_cols=172 Identities=19% Similarity=0.206 Sum_probs=93.5
Q ss_pred ceeeee-eeEeecCcEEEEEeecCCChhhHH-HHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecc
Q 005467 466 PILNHV-CLTIEANEVVAIVGLSGSGKSTFV-NLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIK 543 (695)
Q Consensus 466 ~vL~~i-sl~I~~Ge~vAIVG~SGSGKSTLl-~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~ 543 (695)
+.|+++ .--+++|+.++|.||+||||||++ +++....+...+.+++++.. ..-......+.+|+.+|+... .
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~~~g~~~~~~~~-----~ 83 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMAQFGWDVKPYEE-----K 83 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHHTTTCCCHHHHH-----H
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHHcCCCHHHHhh-----C
Confidence 346665 567899999999999999999995 45566655544555555533 222222333457777765421 1
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh--cCCcEEEEecccccc--C
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSAL--D 619 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll--~~p~ILILDEaTSaL--D 619 (695)
+|+.+. +...+.+ ..++. .+..+-+. +....+.+..++.++ .+|+++++|++|+-+ |
T Consensus 84 ~~l~~~---~~~~~~~-------------~~~~~-~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~ 144 (247)
T 2dr3_A 84 GMFAMV---DAFTAGI-------------GKSKE-YEKYIVHD--LTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINK 144 (247)
T ss_dssp TSEEEE---ECSTTTT-------------CC--C-CCSCBCSC--CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTC
T ss_pred CcEEEE---ecchhhc-------------ccccc-cccccccC--ccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCC
Confidence 122221 0000000 00000 00000000 112233344444444 479999999999988 3
Q ss_pred cccchhhhhHHHhhhccccCcceEEEEeeeccc--------c-cccCeEEEeeC
Q 005467 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLST--------I-KAVDRIVVIDD 664 (695)
Q Consensus 620 ~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlst--------i-~~aD~IvvL~~ 664 (695)
..........+.+..+ ..|.|+++++|.... + ..||.|+.|++
T Consensus 145 ~~~~~~~l~~l~~~~~--~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 145 PAMARSIILQLKRVLA--GTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp GGGHHHHHHHHHHHHH--HTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHH--HCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 3222333344444332 246899999997654 2 45899999974
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-13 Score=147.34 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=102.1
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecC-------cEEEEEeecCCChhhHHHHHHhhh----cCCCceEEEcCccCCc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEAN-------EVVAIVGLSGSGKSTFVNLLLRLY----EPSDGQIYIDGFPLTD 518 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~G-------e~vAIVG~SGSGKSTLl~LL~rly----~p~~G~I~idG~di~~ 518 (695)
++.++++..|+. +.+++++++.|++| +.++|+||+|+|||||++++++.. .|.+|.+..++.++..
T Consensus 19 lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 445566666653 35899999999987 899999999999999999999999 7888998888776654
Q ss_pred chhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhHH---HHHHHhhHhHhHhcCCCCccccccc----cccCCc
Q 005467 519 LDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIE---WAAKQAYVHEFILSLPCGYETLVDD----DLLSGG 591 (695)
Q Consensus 519 i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~---~A~~~a~l~~fI~~LP~G~dT~vge----~~LSGG 591 (695)
+.....+..|++++|...++. ++.|++... ..+...+-+. ...+.+ .+ .+|. =+.+|. ..||+|
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~-~~~~~~~i~~~~~~~~~~i--~~---~l~~--~~li~at~~~~~Ls~~ 166 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLYSA-IEDFQIDIMIGKGPSAKSI--RI---DIQP--FTLVGATTRSGLLSSP 166 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHHHH-HHTSCCCC--------------------CC--CEEEEEESCGGGSCHH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHHHH-HHhcccceeeccCcccccc--cc---cCCC--eEEEEecCCcccCCHH
Confidence 322222456888888777664 777776422 1111000000 000000 00 1121 011221 379999
Q ss_pred cchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhh
Q 005467 592 QKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 634 (695)
Q Consensus 592 QkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~ 634 (695)
+|||++++ ..||+.+...+.+.|++..
T Consensus 167 l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 167 LRSRFGII----------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp HHTTCSEE----------------EECCCCCHHHHHHHHHHHH
T ss_pred HHHhcCce----------------eeCCCCCHHHHHHHHHHHH
Confidence 99999766 7899999988888887764
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.9e-10 Score=119.48 Aligned_cols=140 Identities=14% Similarity=0.180 Sum_probs=87.1
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCc-eEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 554 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G-~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~ 554 (695)
++|++++++|++||||||++..|++.+.+.+| +|.+-+ +|++ ..+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~-------------------~D~~--r~~a------------ 149 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT-------------------TDTY--RIAA------------ 149 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE-------------------CCCS--STTH------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe-------------------cCcc--cchH------------
Confidence 47999999999999999999999999998888 555444 3331 0011
Q ss_pred CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhh
Q 005467 555 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALR 634 (695)
Q Consensus 555 ~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~ 634 (695)
.+++...++..+ +|. ... ..++..+.+|+++ ++|+++|+| |+++|...+..+.+...-+.
T Consensus 150 -~eqL~~~~~~~g-------l~~----~~~----~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 150 -VEQLKTYAELLQ-------APL----EVC----YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp -HHHHHHHHTTTT-------CCC----CBC----SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred -HHHHHHHHHhcC-------CCe----Eec----CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 122222222111 111 000 1123346778865 999999999 99999877655544322221
Q ss_pred ccccCcceEEEE--eeecccccc-cCeEEEeeCCeEEE
Q 005467 635 NDCKTKRTVIVI--AHRLSTIKA-VDRIVVIDDGRIIE 669 (695)
Q Consensus 635 ~~~~~~~TvIiI--aHrlsti~~-aD~IvvL~~G~Ive 669 (695)
.. ....+++++ +|....+.. +|++-.++.|.++-
T Consensus 210 ~~-~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FE-SSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CC-TTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hc-CCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 11 123466677 888776654 77766677777765
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.95 E-value=3e-11 Score=127.33 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=44.7
Q ss_pred eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE---cCccCCcchhHHHHhhhccccCCceeee-----eeccc
Q 005467 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI---DGFPLTDLDIRWLREKIGFVGQEPQLLQ-----MDIKS 544 (695)
Q Consensus 473 l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i---dG~di~~i~~~~lR~~I~~V~Qd~~LF~-----~TI~e 544 (695)
+++.+|++++|+||||+|||||+|.|.|+.+|..|+|.+ +|.++.... +.++..+|+|+|.|-++. .|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 677899999999999999999999999999999999999 888775432 122223899999997654 466 8
Q ss_pred ccc
Q 005467 545 NIM 547 (695)
Q Consensus 545 NI~ 547 (695)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 883
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.92 E-value=5.3e-11 Score=129.01 Aligned_cols=137 Identities=14% Similarity=0.131 Sum_probs=90.2
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eN 545 (695)
.+|+++|+++++|+.++|+||+|||||||+++|++.+ +|++..-+ . +.+.++..+|+++|...+| .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--L---PLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--c---cchhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999975 68876511 1 1123444699999998753 455
Q ss_pred ccccCC--cCCCc-hhHHHHHHHhhHhHhHhc---------CCCCcccc-----ccc--cccCCccchhHHHHHHhhcCC
Q 005467 546 IMYGCP--KDVKN-EDIEWAAKQAYVHEFILS---------LPCGYETL-----VDD--DLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 546 I~~g~~--~~~~~-eei~~A~~~a~l~~fI~~---------LP~G~dT~-----vge--~~LSGGQkQRIaIARAll~~p 606 (695)
+..... .+... +.+. ....+.+.++. -|+-++.. +.+ ..+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 544321 01111 1110 11122222221 11111111 112 268999999999999999999
Q ss_pred cEEE-Eeccccc
Q 005467 607 AILL-LDEATSA 617 (695)
Q Consensus 607 ~ILI-LDEaTSa 617 (695)
++++ ||+|++-
T Consensus 302 DLliyLd~~~~~ 313 (377)
T 1svm_A 302 YLKHCLERSEFL 313 (377)
T ss_dssp HHHHHHHTCTHH
T ss_pred CeEEEEeCCHHH
Confidence 9999 9999883
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-10 Score=134.23 Aligned_cols=157 Identities=13% Similarity=0.114 Sum_probs=104.2
Q ss_pred cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC-ceEEEcCccCCcchhHHHHhhhccccCCc--------
Q 005467 465 VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGFPLTDLDIRWLREKIGFVGQEP-------- 535 (695)
Q Consensus 465 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~-G~I~idG~di~~i~~~~lR~~I~~V~Qd~-------- 535 (695)
..+++++++.+++|+.++|+||+|+||||+++.|.++.++.. |.+.+++.+..... ..++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~-----p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM-----PRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS-----CEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC-----CcEEEEecchHHHHHHHH
Confidence 368999999999999999999999999999999999999887 88999987765433 2456655443
Q ss_pred --------------eee-eeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHH
Q 005467 536 --------------QLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600 (695)
Q Consensus 536 --------------~LF-~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIAR 600 (695)
..| ..++.+|+..++ .......+... ......+++..+. ++..- .+.+|+|+.|++..++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~-~~~~~~~~v~~-~~~~~~~L~G~~~--~~~~~-~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDN-CGRTKAPFIDA-TGAHAGALLGDVR--HDPFQ-SGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECC-TTCSSCCEEEC-TTCCHHHHHCEEC--CCCC-----CCCCGGGGEECCH
T ss_pred HHhhccchhhhhhcccccccccccceeecc-ccCCCCCEEEc-CCCCHHhcCceEE--echhh-cCCccccccccccCce
Confidence 223 356777877652 11111110000 1111222222211 11100 1359999999999999
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHh
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHA 632 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~ 632 (695)
....++.+|+|||... |++.....+.++|++
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999988 787777777777764
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.89 E-value=6.6e-10 Score=123.74 Aligned_cols=175 Identities=14% Similarity=0.165 Sum_probs=112.1
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCc-eEEEcCccCCcchhHHHHhh-----hccccCCceeee
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREK-----IGFVGQEPQLLQ 539 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G-~I~idG~di~~i~~~~lR~~-----I~~V~Qd~~LF~ 539 (695)
+.|+++..-+++|+.+.|.|++|+||||++.-+++-..+..| .|.+.+.+. +.+.++++ .++.+|+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~---s~~~l~~r~~~~~~~~~~~~----- 262 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM---SAQQLVMRMLCAEGNINAQN----- 262 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS---CHHHHHHHHHHHHHTCCHHH-----
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC---CHHHHHHHHHHHHcCCCHHH-----
Confidence 468888878999999999999999999999999998877555 677766443 33444443 2333222
Q ss_pred eeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccchhHHHHHHhh--cCCcEEEEecccc
Q 005467 540 MDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAIL--RDPAILLLDEATS 616 (695)
Q Consensus 540 ~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQRIaIARAll--~~p~ILILDEaTS 616 (695)
+.-| ..++++.....+.++ .+...| -.+-+ ..+|++|.+ +.||++. .+|+++|+|+++.
T Consensus 263 ------l~~g---~l~~~~~~~~~~a~~---~l~~~~----l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 263 ------LRTG---KLTPEDWGKLTMAMG---SLSNAG----IYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp ------HHTS---CCCHHHHHHHHHHHH---HHHSSC----EEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred ------HhcC---CCCHHHHHHHHHHHH---HHhcCC----EEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 2223 234444443333222 222222 11222 368888865 6778877 5799999999999
Q ss_pred ccCcc----cc----hhhhhHHHhhhccccCcceEEEEee-----------ecc--------ccc-ccCeEEEeeCCeEE
Q 005467 617 ALDSE----SE----HYVKGVLHALRNDCKTKRTVIVIAH-----------RLS--------TIK-AVDRIVVIDDGRII 668 (695)
Q Consensus 617 aLD~~----tE----~~I~~~L~~~~~~~~~~~TvIiIaH-----------rls--------ti~-~aD~IvvL~~G~Iv 668 (695)
-.+.. +. ..+.+.|+++.+. .+.|||+++| |+. .+. .||.|++|.+++..
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke--~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~ 402 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARE--LEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYY 402 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHH--HTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC-
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHH--hCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccccc
Confidence 87543 12 3344455554332 3689999999 132 343 59999999877653
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.87 E-value=2.1e-11 Score=132.71 Aligned_cols=168 Identities=14% Similarity=0.168 Sum_probs=102.0
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHh------------hhcCCCceEEEcCccCCcchhHHH--Hhhh---ccccCCce
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLR------------LYEPSDGQIYIDGFPLTDLDIRWL--REKI---GFVGQEPQ 536 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~r------------ly~p~~G~I~idG~di~~i~~~~l--R~~I---~~V~Qd~~ 536 (695)
++++|++++|||++|+|||||+|.|.| ..+|+.|.|.++|..+..+.. .. ++.+ ..+.+.+-
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~-~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCE-AYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHH-HHCCSEEECEEEEEECTGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhh-hcccccccCcceEEEeccc
Confidence 567899999999999999999999999 678999999998854322110 00 0011 12222222
Q ss_pred eeee-eccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCc-cccccccccCCccchhHHHHHHhhcCC--cEEEEe
Q 005467 537 LLQM-DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGY-ETLVDDDLLSGGQKQRIAIARAILRDP--AILLLD 612 (695)
Q Consensus 537 LF~~-TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~-dT~vge~~LSGGQkQRIaIARAll~~p--~ILILD 612 (695)
+..+ |..+++ ..+....++.+.+ |..+=+.. ++.+ ..+||+. || +++++|
T Consensus 95 l~~~~s~~e~L---------~~~fl~~ir~~d~---il~Vvd~~~d~~i--~~v~~~~------------dP~~di~ild 148 (392)
T 1ni3_A 95 LTKGASTGVGL---------GNAFLSHVRAVDA---IYQVVRAFDDAEI--IHVEGDV------------DPIRDLSIIV 148 (392)
T ss_dssp GCCCCCSSSSS---------CHHHHHHHTTCSE---EEEEEECCCTTCS--SCCSSSS------------CHHHHHHHHH
T ss_pred cccCCcHHHHH---------HHHHHHHHHHHHH---HHHHHhcccccee--eeecccc------------Ccchhhhhch
Confidence 2211 111111 0111111221110 10000000 0000 1356654 99 999999
Q ss_pred ccccccCcccchhhhhHHHhh-hccccCcceEEEEeeecccccc-cCeEE-EeeCC-eEEEeccc
Q 005467 613 EATSALDSESEHYVKGVLHAL-RNDCKTKRTVIVIAHRLSTIKA-VDRIV-VIDDG-RIIEVGNH 673 (695)
Q Consensus 613 EaTSaLD~~tE~~I~~~L~~~-~~~~~~~~TvIiIaHrlsti~~-aD~Iv-vL~~G-~Ive~Gth 673 (695)
|+++.+|.+.-....+.+... .+ .|.|+ ++|.+..+.. ||+|. +|++| +++..|+.
T Consensus 149 eel~~~D~~~~~k~~~~l~~~~~~---~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 149 DELLIKDAEFVEKHLEGLRKITSR---GANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC---SSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHh---cCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 999999999887777777765 32 35665 3999988765 99999 99999 88866653
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.87 E-value=6.2e-11 Score=119.73 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=43.2
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i 519 (695)
.|+++|+...|+ . ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~ 68 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGA 68 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----------
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccC
Confidence 588999876552 1 456667 89999999999999999999999999999999999988443
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-09 Score=124.31 Aligned_cols=76 Identities=22% Similarity=0.184 Sum_probs=68.0
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhcC--CCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccc
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMY 548 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p--~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~ 548 (695)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.++...+.++.+++.+|...++..+++.||.-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence 467889999999999999999999999998876 78999 89999999999999999999999999999999999863
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.85 E-value=9.2e-09 Score=110.52 Aligned_cols=147 Identities=20% Similarity=0.283 Sum_probs=90.5
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE-EEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK 552 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I-~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~ 552 (695)
-+++|+.+.|.||+|||||||+.-++.-.....|.+ +++... ..+. ...+.+|+.+|+ +.+.. +
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~-----------l~i~~-~ 121 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS-----------LLVSQ-P 121 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG-----------CEEEC-C
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH-----------eEEec-C
Confidence 478999999999999999999888876665555554 455432 1222 234456654433 22221 1
Q ss_pred CCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC--CcEEEEecccccc----------Cc
Q 005467 553 DVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD--PAILLLDEATSAL----------DS 620 (695)
Q Consensus 553 ~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~--p~ILILDEaTSaL----------D~ 620 (695)
+ +.+ |-+.++|++.++ |+++|+||+++-+ |+
T Consensus 122 ~-~~e------------------------------------~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 122 D-TGE------------------------------------QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp S-SHH------------------------------------HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred C-CHH------------------------------------HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 1 111 123377888765 9999999999988 22
Q ss_pred c---cchhhhhHHHhhhcc-ccCcceEEEEeeecc----------------ccc-ccCeEEEeeCCeEEEecc
Q 005467 621 E---SEHYVKGVLHALRND-CKTKRTVIVIAHRLS----------------TIK-AVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 621 ~---tE~~I~~~L~~~~~~-~~~~~TvIiIaHrls----------------ti~-~aD~IvvL~~G~Ive~Gt 672 (695)
. .++.+.+.++++... ...+.|+|+++|-.+ .++ .||.++.+.++++...|+
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1 112344555554210 024689999999543 133 499999998887765554
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=6.7e-10 Score=109.88 Aligned_cols=106 Identities=16% Similarity=0.141 Sum_probs=66.9
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccccccc
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 549 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g 549 (695)
++-=++++|++++|+|+|||||||++++|.+.++ .+.+++||.++|++ +|+.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 4455788999999999999999999999999985 37889999998876 677665
Q ss_pred CCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEecc
Q 005467 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEA 614 (695)
Q Consensus 550 ~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEa 614 (695)
. +...+.++..+++...+.+++..+.++.- .-.++.|.++ ..+++++|+|=+
T Consensus 67 ~-~~~~~~~~~~~~~~~~l~~~i~~~l~~~~----~~~~~~~~~~--------~~~~~~vi~eg~ 118 (207)
T 2qt1_A 67 K-NGFLQYDVLEALNMEKMMSAISCWMESAR----HSVVSTDQES--------AEEIPILIIEGF 118 (207)
T ss_dssp T-TSCBCCSSGGGBCHHHHHHHHHHHHHHHT----TSSCCC-------------CCCCEEEEECT
T ss_pred c-cCCChhHHHHHhHHHHHHHHHHHHHhCCC----CCCcCCCeee--------cCCCCEEEEeeh
Confidence 2 23333334444555555555544322110 0134555554 456778888533
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.1e-09 Score=106.85 Aligned_cols=70 Identities=24% Similarity=0.249 Sum_probs=58.6
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC-CCceEE----------EcCccCCcchhHHHHhhhccccCCceeeeeeccc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQIY----------IDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKS 544 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G~I~----------idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~e 544 (695)
++|+.++|+|||||||||+++.|++.++| ..+.+. .+|.++..++.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999976 333332 478888888888888765 6889999999999
Q ss_pred ccccc
Q 005467 545 NIMYG 549 (695)
Q Consensus 545 NI~~g 549 (695)
| .||
T Consensus 83 ~-~yg 86 (208)
T 3tau_A 83 N-YYG 86 (208)
T ss_dssp E-EEE
T ss_pred c-cCC
Confidence 9 677
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.7e-09 Score=104.55 Aligned_cols=139 Identities=23% Similarity=0.228 Sum_probs=79.0
Q ss_pred EEEEEeecCCChhhHHHHHHhhh-----cCC------CceEEEcCccCC----cch-hHHHHhhhccccCCce--eeeee
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY-----EPS------DGQIYIDGFPLT----DLD-IRWLREKIGFVGQEPQ--LLQMD 541 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly-----~p~------~G~I~idG~di~----~i~-~~~lR~~I~~V~Qd~~--LF~~T 541 (695)
+++|+|++|||||||++.+.|.. .|+ .|+|.++|.++. |.. .+.+++......|++. ++--+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 68999999999999999999974 243 578999997652 222 2233333333333322 11111
Q ss_pred ccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcc-cccccc-ccCCccchhHHHHHHhhcCCcEEEEeccccccC
Q 005467 542 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYE-TLVDDD-LLSGGQKQRIAIARAILRDPAILLLDEATSALD 619 (695)
Q Consensus 542 I~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~d-T~vge~-~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD 619 (695)
+.+- .+.+++....+.. .+ ..+.+.- -.++.. .|..-.......||++.++|+++++| |||+|
T Consensus 87 ~~~~--------~s~~~~~~~~~~~--~~---~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sal~ 151 (199)
T 2f9l_A 87 IAKH--------LTYENVERWLKEL--RD---HADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIE--TSALD 151 (199)
T ss_dssp TTCH--------HHHHTHHHHHHHH--HH---HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE--CCTTT
T ss_pred CcCH--------HHHHHHHHHHHHH--HH---hcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEE--EeCCC
Confidence 1100 0111221111111 11 1111111 123432 34332334567899999999999999 99999
Q ss_pred cccchhhhhHHHhh
Q 005467 620 SESEHYVKGVLHAL 633 (695)
Q Consensus 620 ~~tE~~I~~~L~~~ 633 (695)
.+.-.++.+.|.+.
T Consensus 152 ~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 152 STNVEEAFKNILTE 165 (199)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99988888777654
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.1e-09 Score=113.70 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=41.4
Q ss_pred EEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh--hhcCCCceEEEcCc
Q 005467 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR--LYEPSDGQIYIDGF 514 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r--ly~p~~G~I~idG~ 514 (695)
+|+...|+......+|++++++++ .+++||++|||||||++.|.| +.++.+|.++-...
T Consensus 12 ~~~~~~~~~~~~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 12 QRACTALGDHGDSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp TTTTTSCSSCCSSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred HHHHHhhCccccccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 334444542212358999999999 999999999999999999999 77888887764443
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.8e-09 Score=103.09 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=51.4
Q ss_pred eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCc-eEEEcCccCCcchhHHHHhhhccccC-----------Cceeeee
Q 005467 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKIGFVGQ-----------EPQLLQM 540 (695)
Q Consensus 473 l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G-~I~idG~di~~i~~~~lR~~I~~V~Q-----------d~~LF~~ 540 (695)
++|++|++++|+|||||||||++++|.+++.|..| .+... .++-.. ..+..+++++| +..+++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMT---TRQMRE-GEVDGVDYFFKTRDAFEALIKDDQFIEYA 76 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEE---CSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccc---cCCCCC-CccCCCceEEcCHHHHHHHHHcCCeEEEE
Confidence 46889999999999999999999999999977655 33111 111100 01122445444 4677788
Q ss_pred eccccccccCCcCCCchhHHHHHH
Q 005467 541 DIKSNIMYGCPKDVKNEDIEWAAK 564 (695)
Q Consensus 541 TI~eNI~~g~~~~~~~eei~~A~~ 564 (695)
++++| .||. ..+++.++++
T Consensus 77 ~~~~~-~~g~----~~~~i~~~l~ 95 (207)
T 2j41_A 77 EYVGN-YYGT----PVQYVKDTMD 95 (207)
T ss_dssp EETTE-EEEE----EHHHHHHHHH
T ss_pred eECCe-ecCC----CHHHHHHHHH
Confidence 88888 4662 2344554443
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.7e-09 Score=122.80 Aligned_cols=91 Identities=23% Similarity=0.219 Sum_probs=64.9
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCc-eEE-EcCccCCc-------c---hhHHHHhhhccccCCceeee
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIY-IDGFPLTD-------L---DIRWLREKIGFVGQEPQLLQ 539 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G-~I~-idG~di~~-------i---~~~~lR~~I~~V~Qd~~LF~ 539 (695)
...+++|++++|+|+||||||||+++|++.+.|++| +|. +||.++.+ + +...+++.+++|+|+.
T Consensus 363 ~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l---- 438 (552)
T 3cr8_A 363 PPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI---- 438 (552)
T ss_dssp CCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH----
T ss_pred ccccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH----
Confidence 346889999999999999999999999999999987 784 99977643 1 2234567789999973
Q ss_pred eeccccccccCCc---CCCchhHHHHHHHhh
Q 005467 540 MDIKSNIMYGCPK---DVKNEDIEWAAKQAY 567 (695)
Q Consensus 540 ~TI~eNI~~g~~~---~~~~eei~~A~~~a~ 567 (695)
+..+|+.+.... ....++..++++..+
T Consensus 439 -~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 -TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp -HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred -HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 566777665210 122344555555544
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.67 E-value=9.5e-09 Score=99.23 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=71.4
Q ss_pred eeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch-hH------HHHhhhccccCCc------
Q 005467 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-IR------WLREKIGFVGQEP------ 535 (695)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~-~~------~lR~~I~~V~Qd~------ 535 (695)
+++++++.+| .++|+||||||||||++.|.++..+..|...-.+. +.++- .. ..+..|.++.|++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~ 95 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASR-ISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPI 95 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSS-GGGGBCCCC----CCSCEEEEEEEECTTCCSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccccccccc-chheeecccccCCCCceEEEEEEEeCCCccccc
Confidence 5788999999 99999999999999999999999888876543332 11111 00 2345688888874
Q ss_pred ----eeeeeecccc----ccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 536 ----QLLQMDIKSN----IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 536 ----~LF~~TI~eN----I~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
+.+..++..+ +... ....+.+++.+.++.++++ |+.++ -+++||.|+++.
T Consensus 96 ~~~~~~i~r~~~~~~~~~~~i~-g~~~~~~~~~~~l~~~~l~------~~~~~------~~~qg~~~~l~~ 153 (182)
T 3kta_A 96 DEDEVVIRRRVYPDGRSSYWLN-GRRATRSEILDILTAAMIS------PDGYN------IVLQGDITKFIK 153 (182)
T ss_dssp SSSEEEEEEEECTTSCEEEEET-TEEECHHHHHHHHHHTTCC------TTCTT------EECTTCTTHHHH
T ss_pred CCcEEEEEEEEEeCCcEEEEEC-CeEcCHHHHHHHHHHcCCC------CCCCE------EEEcccHHHHHh
Confidence 3344444322 1111 1223455666666555543 33332 367788777753
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.4e-08 Score=104.50 Aligned_cols=147 Identities=19% Similarity=0.136 Sum_probs=90.3
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE-EEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcC
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 553 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I-~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~ 553 (695)
+++|+.+.|.||+|||||||+..+++...+..|.+ ++|+.+..+ ..+.+++|+.+|+.. +.+ +
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~-----------i~~-~- 121 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLL-----------ISQ-P- 121 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCE-----------EEC-C-
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhh-----------hhh-c-
Confidence 88999999999999999999999999999888876 777765433 225677898876543 331 1
Q ss_pred CCchhHHHHHHHhhHhHhHhcC-C-----CCccccccccccCC--ccchhHHHHHHhhcCCcEEEEeccccccCcccchh
Q 005467 554 VKNEDIEWAAKQAYVHEFILSL-P-----CGYETLVDDDLLSG--GQKQRIAIARAILRDPAILLLDEATSALDSESEHY 625 (695)
Q Consensus 554 ~~~eei~~A~~~a~l~~fI~~L-P-----~G~dT~vge~~LSG--GQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~ 625 (695)
.+-+++.+.++. .+.+- | |...+......++| ||+|+...||++- .
T Consensus 122 ~~~e~~l~~~~~-----l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la---------------------~ 175 (356)
T 3hr8_A 122 DHGEQALEIVDE-----LVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMS---------------------Q 175 (356)
T ss_dssp SSHHHHHHHHHH-----HHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHH---------------------H
T ss_pred cCHHHHHHHHHH-----HhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHH---------------------H
Confidence 123343333222 22211 1 11112222113444 8899999999875 2
Q ss_pred hhhHHHhhhccccCcceEEEEeeecc----------------ccc-ccCeEEEeeCC
Q 005467 626 VKGVLHALRNDCKTKRTVIVIAHRLS----------------TIK-AVDRIVVIDDG 665 (695)
Q Consensus 626 I~~~L~~~~~~~~~~~TvIiIaHrls----------------ti~-~aD~IvvL~~G 665 (695)
+.+.|..+.+ ..+.|+|+|.|=-+ .++ .+|.++.++++
T Consensus 176 ~L~~L~~lak--~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~ 230 (356)
T 3hr8_A 176 ALRKIAGSVN--KSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRG 230 (356)
T ss_dssp HHHHHHHHHH--TSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHH--hcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEec
Confidence 3444444433 24678888877411 133 37888888863
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.3e-08 Score=108.01 Aligned_cols=144 Identities=17% Similarity=0.271 Sum_probs=87.1
Q ss_pred cCcE-EEEEeecCCChhhHHHHHHhhhc-----------CCCceEEEcCccCCcchhHHHHhhhccccCCce-e---eee
Q 005467 477 ANEV-VAIVGLSGSGKSTFVNLLLRLYE-----------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ-L---LQM 540 (695)
Q Consensus 477 ~Ge~-vAIVG~SGSGKSTLl~LL~rly~-----------p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~-L---F~~ 540 (695)
.|-. ++|||++|||||||++.|.|... |..|.|.++|.++.-+ ...|++.|.|+ + |..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~------DT~G~i~~lp~~lve~f~~ 250 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLV------DTVGFIRGIPPQIVDAFFV 250 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEE------ECCCBCSSCCGGGHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEE------eCCCchhcCCHHHHHHHHH
Confidence 3444 99999999999999999999775 6779999999765333 34666665432 1 222
Q ss_pred -----eccccccccCCcCCCchh--HHHHHHHhhHhHhHhcCC-CCcc-ccccc--cccCCccchhHHHH----HHh-hc
Q 005467 541 -----DIKSNIMYGCPKDVKNED--IEWAAKQAYVHEFILSLP-CGYE-TLVDD--DLLSGGQKQRIAIA----RAI-LR 604 (695)
Q Consensus 541 -----TI~eNI~~g~~~~~~~ee--i~~A~~~a~l~~fI~~LP-~G~d-T~vge--~~LSGGQkQRIaIA----RAl-l~ 604 (695)
.-+|++.+.. |+++.. ..+..+. ..+.+..+. .+.- -.|+. +.+|+|++||+.++ |++ ..
T Consensus 251 tl~~~~~aD~il~Vv--D~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~ 326 (364)
T 2qtf_A 251 TLSEAKYSDALILVI--DSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSP 326 (364)
T ss_dssp HHHGGGGSSEEEEEE--ETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHhCCEEEEEE--ECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCC
Confidence 2345555541 333322 2211111 122222221 1111 12233 26788999988887 666 44
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhh
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALR 634 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~ 634 (695)
+|++ +||||+|.+.-..+.+.|.+..
T Consensus 327 ~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 327 IFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred CCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 5565 8999999999998888887653
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-09 Score=105.99 Aligned_cols=61 Identities=33% Similarity=0.428 Sum_probs=46.7
Q ss_pred EEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE--EEcCccCC
Q 005467 453 VNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI--YIDGFPLT 517 (695)
Q Consensus 453 ~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I--~idG~di~ 517 (695)
+|++.++.. ..+.+..++..++|++++|+|||||||||++++|++.+. ..|.+ ++||.++.
T Consensus 3 ~~~~~~~~~---~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECS---VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CC---CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccccc---cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 355555432 347788899999999999999999999999999999998 78998 99986543
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.6e-09 Score=116.02 Aligned_cols=139 Identities=16% Similarity=0.167 Sum_probs=98.9
Q ss_pred EEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccc
Q 005467 452 FVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFV 531 (695)
Q Consensus 452 f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V 531 (695)
++++...|.+ ..+++++++++++| +.|+||+|+|||||++.+.+... .|.|.++|.++.+......++++..+
T Consensus 43 l~~lv~~l~~---~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 43 LKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHC---GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHhhc---hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 4444444532 24789999999999 99999999999999999999985 78999999988765555666778888
Q ss_pred cCCce-eee-eeccccc-cccCCcCC----CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 532 GQEPQ-LLQ-MDIKSNI-MYGCPKDV----KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 532 ~Qd~~-LF~-~TI~eNI-~~g~~~~~----~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
+|+.. .+. -.+-|+| .++..... ..++..+.+ ..++. .|||||+|+..+++|...
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~-------------~Ldg~~~~~~viviAatn 177 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV-------------EMDGFEKDTAIVVMAATN 177 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH-------------HGGGCCSSCCCEEEECCS
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH-------------HhcccccCccEEEEEecC
Confidence 88864 232 3557787 44421111 122222221 12221 378999999999999999
Q ss_pred CCcEEEEeccccc
Q 005467 605 DPAILLLDEATSA 617 (695)
Q Consensus 605 ~p~ILILDEaTSa 617 (695)
+|++ ||||.-.
T Consensus 178 ~p~~--LD~aLlr 188 (499)
T 2dhr_A 178 RPDI--LDPALLR 188 (499)
T ss_dssp CGGG--SCTTTSS
T ss_pred Chhh--cCccccc
Confidence 9988 8998764
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.6e-09 Score=108.42 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=36.2
Q ss_pred eEEEEEE-eeecCCCCccceeeeeeeEeec---CcEEEEEeecCCChhhHHHHHHhhh
Q 005467 449 HVQFVNI-SFHYPSRPTVPILNHVCLTIEA---NEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 449 ~I~f~nV-sF~Y~~~~~~~vL~~isl~I~~---Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.++++|| +|+|++ +.++|+|+||+|++ |++++|+|+|||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 24799999999999 9999999999999999999999966
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.62 E-value=2.7e-09 Score=114.45 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=64.5
Q ss_pred cchhhHHHhhccCCcccccccccccccccceEEEEEEeeecCCCCccceee--------------eeeeEeecCcEEEEE
Q 005467 419 GATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVPILN--------------HVCLTIEANEVVAIV 484 (695)
Q Consensus 419 ~a~~rl~~~l~~~~~~~~~~~~~~~~~~~~~I~f~nVsF~Y~~~~~~~vL~--------------~isl~I~~Ge~vAIV 484 (695)
...||.+++++.++.+ +..+...++.|+|+||+|.||.. +.+|+ |+++.|.+|++++|+
T Consensus 108 ~~~ER~faLl~v~~vn-----~~~pe~~~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~Iv 180 (422)
T 3ice_A 108 KEGERYFALLKVNEVN-----FDKPENARNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIV 180 (422)
T ss_dssp CSSCCSEEEEEEEEES-----SSCHHHHTTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEE
T ss_pred CccchHHHHhccCccc-----CCChhhhcCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEe
Confidence 4568999999876422 12233456789999999999964 46899 999999999999999
Q ss_pred eecCCChhhHHHHHHhhhc
Q 005467 485 GLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 485 G~SGSGKSTLl~LL~rly~ 503 (695)
||||+|||||+++|.|+..
T Consensus 181 G~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 181 APPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp CCSSSSHHHHHHHHHHHHH
T ss_pred cCCCCChhHHHHHHHHHHh
Confidence 9999999999999999874
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.4e-08 Score=97.07 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=25.5
Q ss_pred ecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 458 HYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 458 ~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+|+.++..++++||||++++|+.++|+|+|||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 566555668999999999999999999999999999999999988
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.7e-08 Score=96.19 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=45.8
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCcee
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQL 537 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~L 537 (695)
+-.++.++|++++|+|||||||||++++|.+.+ |.+.+||.++..-. ...+..+|+++|+..+
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-~~~~~~~g~~~~~~~~ 83 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-NIATMQRGIPLTDEDR 83 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-HHHHHHTTCCCCHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-HHHHHhcCCCCCCccc
Confidence 334667899999999999999999999999998 99999998875421 1223467899887543
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.1e-07 Score=103.71 Aligned_cols=128 Identities=20% Similarity=0.340 Sum_probs=82.0
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccc
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eN 545 (695)
..++++++++++| +.|+||+|+|||||++.+.+.... + ++.-+..+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------------------------~-f~~is~~~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------------------------P-FFHISGSDF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------------------------C-EEEEEGGGT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------------------------C-eeeCCHHHH
Confidence 3677888888888 899999999999999999984310 1 121111111
Q ss_pred ccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEecccc---------
Q 005467 546 IMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS--------- 616 (695)
Q Consensus 546 I~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTS--------- 616 (695)
. +. .+| .|++++|-.+++|...+|.||++||+.+
T Consensus 86 ~--------------------------~~-------~~g----~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 86 V--------------------------EL-------FVG----VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp T--------------------------TC-------CTT----HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred H--------------------------HH-------Hhc----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 1 00 011 2567889999999999999999999944
Q ss_pred -ccCcccchhhhhHHHhhhc-cccCcceEEEEeeeccccc-------ccCeEEEee
Q 005467 617 -ALDSESEHYVKGVLHALRN-DCKTKRTVIVIAHRLSTIK-------AVDRIVVID 663 (695)
Q Consensus 617 -aLD~~tE~~I~~~L~~~~~-~~~~~~TvIiIaHrlsti~-------~aD~IvvL~ 663 (695)
+.|.+.++.+.+.+..+.. +...+..+|..||+++.+. ++|+.+.++
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~ 184 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVD 184 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECC
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecC
Confidence 5666665555555544320 0023467888899986542 466666554
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.44 E-value=3.8e-08 Score=104.47 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=48.5
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~ 520 (695)
+++++||++++|++++++|++|+||||++..|++.+.+.+|+|++.+.|+....
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~ 147 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAG 147 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHH
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh
Confidence 457899999999999999999999999999999999999999999999986544
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.7e-08 Score=100.31 Aligned_cols=66 Identities=21% Similarity=0.155 Sum_probs=52.5
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch------h-HH---HHhhhccccCCceeee
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD------I-RW---LREKIGFVGQEPQLLQ 539 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~------~-~~---lR~~I~~V~Qd~~LF~ 539 (695)
+-+.+.++|++++|+|++||||||++++|.++ +|+|.+++.|...+. . +. .++.+++++|+..++.
T Consensus 12 ~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 12 TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 34556789999999999999999999999998 799999998865331 1 11 2567899999887653
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.33 E-value=9e-08 Score=101.42 Aligned_cols=139 Identities=17% Similarity=0.173 Sum_probs=82.6
Q ss_pred EEeeecCCCCccceeeeeeeEeecCc------EEEEEeecCCChhhHHHHHHhhhc--CCCceEEEcCccCCcchhHHHH
Q 005467 454 NISFHYPSRPTVPILNHVCLTIEANE------VVAIVGLSGSGKSTFVNLLLRLYE--PSDGQIYIDGFPLTDLDIRWLR 525 (695)
Q Consensus 454 nVsF~Y~~~~~~~vL~~isl~I~~Ge------~vAIVG~SGSGKSTLl~LL~rly~--p~~G~I~idG~di~~i~~~~lR 525 (695)
.+++.|.+ .+.|++++..+.+++ ++||+|||||||||++++|.++++ |.+|+|.+-+.|--.++...+.
T Consensus 65 ll~~~~~~---~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~ 141 (321)
T 3tqc_A 65 LLSFYVTA---RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLE 141 (321)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHH
T ss_pred HHHHhhcc---hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhh
Confidence 34555643 358889998888887 999999999999999999999998 5677765544443333333321
Q ss_pred hhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcC
Q 005467 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~ 605 (695)
. .+. +. .+|.+...+.+.+ .+++..+..|-++ +---..|-+..+|+.-+...+..
T Consensus 142 ~-~~~------------~~--~~g~P~~~D~~~l---------~~~L~~L~~g~~~-v~~P~yd~~~~~r~~~~~~~v~~ 196 (321)
T 3tqc_A 142 K-QGL------------MK--RKGFPESYDMPSL---------LRVLNAIKSGQRN-VRIPVYSHHYYDIVRGQYEIVDQ 196 (321)
T ss_dssp H-TTC------------GG--GTTSGGGBCHHHH---------HHHHHHHHTTCSS-EEEEEEETTTTEEEEEEEEEECS
T ss_pred h-HHH------------Hh--hccCcccccHHHH---------HHHHHhhhccccc-cccchhhhhccccccCceeeccC
Confidence 1 111 11 1332212222222 2334444444311 11113455555555544456678
Q ss_pred CcEEEEeccccccCc
Q 005467 606 PAILLLDEATSALDS 620 (695)
Q Consensus 606 p~ILILDEaTSaLD~ 620 (695)
|+|+|+|.+-.-.|.
T Consensus 197 ~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 197 PDIVILEGLNILQTG 211 (321)
T ss_dssp CSEEEEECTTTTCCC
T ss_pred CCEEEEEcccccccc
Confidence 999999998877666
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-06 Score=92.43 Aligned_cols=147 Identities=18% Similarity=0.237 Sum_probs=83.4
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhh-cC------CCceEEEcCccCCcchhHHH---HhhhccccCCceeeeeecc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY-EP------SDGQIYIDGFPLTDLDIRWL---REKIGFVGQEPQLLQMDIK 543 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly-~p------~~G~I~idG~di~~i~~~~l---R~~I~~V~Qd~~LF~~TI~ 543 (695)
-+++|+.+.|.||+||||||++.-++.-. .| ..+-++++...- ++.+.+ .+.+++-+++ +.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~--~~~~~l~~~~~~~g~~~~~-------~~ 173 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT--FRWERIENMAKALGLDIDN-------VM 173 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHHHHHHHHHTTCCHHH-------HH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHhCCCHHH-------Hh
Confidence 58999999999999999999998888754 33 344567776542 223332 2334443222 23
Q ss_pred ccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh---cCCcEEEEeccccccCc
Q 005467 544 SNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL---RDPAILLLDEATSALDS 620 (695)
Q Consensus 544 eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll---~~p~ILILDEaTSaLD~ 620 (695)
+||.+.+ + .+.++ +.+.+..+++++ .+|+++|+|+.++-.+.
T Consensus 174 ~~l~~~~-~-~~~~~---------------------------------~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 174 NNIYYIR-A-INTDH---------------------------------QIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HTEEEEE-C-CSHHH---------------------------------HHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred ccEEEEe-C-CCHHH---------------------------------HHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 5555441 1 11111 123455566666 57999999999988754
Q ss_pred cc-------c--hhhhhHHHhhhcc-ccCcceEEEEeeeccc----------------cc-ccCeEEEeeC
Q 005467 621 ES-------E--HYVKGVLHALRND-CKTKRTVIVIAHRLST----------------IK-AVDRIVVIDD 664 (695)
Q Consensus 621 ~t-------E--~~I~~~L~~~~~~-~~~~~TvIiIaHrlst----------------i~-~aD~IvvL~~ 664 (695)
+. + ..+.+.++.+.+- ...+.|||++.|-... +. .+|.++.|++
T Consensus 219 ~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r 289 (324)
T 2z43_A 219 EYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289 (324)
T ss_dssp HSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC------------------------CEEEEEEE
T ss_pred hhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence 21 1 1234444333210 0236789988884322 22 3788888864
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=4.9e-07 Score=88.93 Aligned_cols=125 Identities=22% Similarity=0.253 Sum_probs=73.1
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhH
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 559 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei 559 (695)
+++|+|++||||||+.++|.++ |...+|+ +.+.+.+.. + + .+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~--------d~~~~~~~~-~----------------~------~~~~ 47 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA--------DVVAREVVA-K----------------D------SPLL 47 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH--------HHHHHHTTC-S----------------S------CHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch--------HHHHHHHcc-C----------------C------hHHH
Confidence 6999999999999999999983 6666654 233222210 0 1 0111
Q ss_pred HHHHHHhhHhHhHhcCCCCcccccccc-ccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhcccc
Q 005467 560 EWAAKQAYVHEFILSLPCGYETLVDDD-LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCK 638 (695)
Q Consensus 560 ~~A~~~a~l~~fI~~LP~G~dT~vge~-~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~ 638 (695)
.+..+.. |+. -.++|+.+|..+++.++.+|+.+-.+ ++.+++.-.+.+.+.+...
T Consensus 48 ~~i~~~~-----------------g~~~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~----- 103 (206)
T 1jjv_A 48 SKIVEHF-----------------GAQILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ----- 103 (206)
T ss_dssp HHHHHHH-----------------CTTCC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHh-----------------CHHHhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-----
Confidence 1111111 221 24789999999999999998754333 3456665555554444332
Q ss_pred CcceEEEEeeecccc---cccCeEEEeeC
Q 005467 639 TKRTVIVIAHRLSTI---KAVDRIVVIDD 664 (695)
Q Consensus 639 ~~~TvIiIaHrlsti---~~aD~IvvL~~ 664 (695)
.+.++|+-+|.+... +.||.+++++-
T Consensus 104 ~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 104 TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 245788778877553 56999999963
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=4.3e-08 Score=95.92 Aligned_cols=82 Identities=23% Similarity=0.166 Sum_probs=50.2
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC-cch-h--HHHHhhhccccCCceeeeeeccccccccCCcC
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT-DLD-I--RWLREKIGFVGQEPQLLQMDIKSNIMYGCPKD 553 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~-~i~-~--~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~ 553 (695)
..+++|+|++||||||+.++|.+. |-..+|.-++. +.. . +.+.+. . |+.+. ++++ ||..++ ...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~~~~~~~~~~~~~i~~~---~-~~~~~-~g~i-~~~~l~-~~~ 75 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDALAARARENKEEELKRL---F-PEAVV-GGRL-DRRALA-RLV 75 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHHHHHHHHHHTHHHHHHH---C-GGGEE-TTEE-CHHHHH-HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccHHHHHhcCChHHHHHHH---H-HHHHh-CCCc-CHHHHH-HHH
Confidence 457999999999999999999996 77778764431 111 0 122222 2 55544 6777 776665 233
Q ss_pred CCchhHHHHHHHhhHhHhH
Q 005467 554 VKNEDIEWAAKQAYVHEFI 572 (695)
Q Consensus 554 ~~~eei~~A~~~a~l~~fI 572 (695)
.++++....++ ...+.++
T Consensus 76 ~~~~~~~~~l~-~~~~~~i 93 (203)
T 1uf9_A 76 FSDPERLKALE-AVVHPEV 93 (203)
T ss_dssp TTSHHHHHHHH-HHHHHHH
T ss_pred hCCHHHHHHHH-HHhChHH
Confidence 45555555555 2344444
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2.3e-06 Score=93.94 Aligned_cols=140 Identities=19% Similarity=0.191 Sum_probs=89.5
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhH----HHH
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIR----WLR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~----~lR 525 (695)
+..++++..|++. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|+...... .++
T Consensus 77 ~v~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~ 149 (425)
T 2ffh_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLG 149 (425)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhc
Confidence 4566777888642 1 678888 8999999999999999999999999999999999999888764432 222
Q ss_pred hhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcC-CCCccccccc--cccCC---ccchhHHHH
Q 005467 526 EKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSL-PCGYETLVDD--DLLSG---GQKQRIAIA 599 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~L-P~G~dT~vge--~~LSG---GQkQRIaIA 599 (695)
+..++ .+|.. + +..+..++. .+.++.+ .++||..+=+ .+++. ...+..+++
T Consensus 150 ~~~gv-----~v~~~--------~--~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~ 206 (425)
T 2ffh_A 150 EKVGV-----PVLEV--------M--DGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLK 206 (425)
T ss_dssp HHHTC-----CEEEC--------C--TTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHH
T ss_pred ccCCc-----cEEec--------C--CCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhh
Confidence 22221 11111 1 112223331 1223333 2578877655 24432 245666788
Q ss_pred HHhhcCCcEEEEeccccccCc
Q 005467 600 RAILRDPAILLLDEATSALDS 620 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~ 620 (695)
|++..++-+|++| ++++.|.
T Consensus 207 ~~~~pd~vlLVvD-a~tgq~a 226 (425)
T 2ffh_A 207 EVLGPDEVLLVLD-AMTGQEA 226 (425)
T ss_dssp HHHCCSEEEEEEE-GGGTTHH
T ss_pred hccCCceEEEEEe-ccchHHH
Confidence 8887777788888 4554443
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.21 E-value=3.3e-07 Score=108.35 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=49.3
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEecccc-ccCcccchhhhhHHHhhhccccCcceEEE-Eeeeccccc
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLDEATS-ALDSESEHYVKGVLHALRNDCKTKRTVIV-IAHRLSTIK 654 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILDEaTS-aLD~~tE~~I~~~L~~~~~~~~~~~TvIi-IaHrlsti~ 654 (695)
-+|+|+.+|..++++++.+++++|+|||.. +||.+.-..+.+.+...++ ..+++++ .||....+.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~---~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP---DLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT---TCEEEEEESCSCCHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC---CceEEEEeccccHHHHH
Confidence 478999999999999999999999999997 8997765555555544432 2356666 488766553
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-06 Score=84.02 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=42.1
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHh-hhccccCC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE-KIGFVGQE 534 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~-~I~~V~Qd 534 (695)
++|++++|+|+|||||||+++.|.+.+ |.+.+|+.++..- ..+++ .+|++.|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~~--~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHPR--RNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCCH--HHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccch--HHHHHhhcCcCCCc
Confidence 469999999999999999999999987 8999999776541 22333 46777665
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-06 Score=86.52 Aligned_cols=47 Identities=23% Similarity=0.225 Sum_probs=41.0
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD 520 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~ 520 (695)
..++|++++|+|+|||||||+++.|.+++++.+|.|.+.+.|....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 36789999999999999999999999999999999998877654433
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.7e-06 Score=90.68 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=35.2
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i 511 (695)
-|+.+.--++||+.+.|.|++|+||||++.-++.-.....+.|.+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~ 79 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV 79 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 466665578999999999999999999998887766544455544
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.10 E-value=6.1e-06 Score=88.25 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=33.2
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhh-cC------CCceEEEcCcc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY-EP------SDGQIYIDGFP 515 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly-~p------~~G~I~idG~d 515 (695)
-+++|+.+.|.||+||||||++.-++.-. .| ..+.++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 48899999999999999999999888763 22 33456777654
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.2e-06 Score=85.40 Aligned_cols=70 Identities=29% Similarity=0.258 Sum_probs=49.2
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhh---cCCCceE--------EEcCccCCcch-hHHHHhhhcccc------CCceeee
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLY---EPSDGQI--------YIDGFPLTDLD-IRWLREKIGFVG------QEPQLLQ 539 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly---~p~~G~I--------~idG~di~~i~-~~~lR~~I~~V~------Qd~~LF~ 539 (695)
.-+++|+|||||||||+.+.|.+.+ -.+.|.+ .-+|.++.+.. ...+.+.+.++. |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 4589999999999999999999544 4556665 34566666653 445566666655 5566666
Q ss_pred eecccccc
Q 005467 540 MDIKSNIM 547 (695)
Q Consensus 540 ~TI~eNI~ 547 (695)
.+|.+||+
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 77777765
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.1e-06 Score=90.41 Aligned_cols=61 Identities=28% Similarity=0.322 Sum_probs=49.2
Q ss_pred hhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 594 QRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 594 QRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
-|++|||||..+|++++||||| |.++.. ++++.. ..|.|+++++|..+....|||+++|..
T Consensus 87 l~~~la~aL~~~p~illlDEp~---D~~~~~---~~l~~~----~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 87 FADALRAALREDPDVIFVGEMR---DLETVE---TALRAA----ETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHHHHHCCSEEEESCCC---SHHHHH---HHHHHH----HTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhCCCEEEeCCCC---CHHHHH---HHHHHH----ccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 4899999999999999999999 887644 344433 246899999999997777998877653
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=1.9e-06 Score=82.84 Aligned_cols=40 Identities=30% Similarity=0.314 Sum_probs=33.7
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCc--eEEEcCccC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGFPL 516 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G--~I~idG~di 516 (695)
++|+.++|+|++||||||++++|.+.+.| .| .|.+||..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999999977 67 677776443
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.8e-06 Score=82.64 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=52.8
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcC-CCceE----------EEcCccCCcchhHHHHhhhccccCCceeeeeec
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDGQI----------YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI 542 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G~I----------~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI 542 (695)
...+|..++|+|||||||||+++.|...++. ..+.+ .+||.++.-++.+.+.+. +.|..+++.+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~ 84 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK---LKEGQFLEFDKY 84 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHH---HHTTCEEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHH---HHcCCCEEeHHh
Confidence 3568999999999999999999999988742 11111 247878777777777654 356777777777
Q ss_pred ccccccc
Q 005467 543 KSNIMYG 549 (695)
Q Consensus 543 ~eNI~~g 549 (695)
.+| .||
T Consensus 85 ~~~-~~~ 90 (204)
T 2qor_A 85 ANN-FYG 90 (204)
T ss_dssp TTE-EEE
T ss_pred CCC-eec
Confidence 777 555
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=5.7e-06 Score=91.52 Aligned_cols=69 Identities=16% Similarity=0.315 Sum_probs=45.8
Q ss_pred hc-CCcEEEEeccccccCc-ccchhhhhHHHhhhccccCcceEEEEeeec-ccccc-cCeEEE-eeCCeEEEeccch
Q 005467 603 LR-DPAILLLDEATSALDS-ESEHYVKGVLHALRNDCKTKRTVIVIAHRL-STIKA-VDRIVV-IDDGRIIEVGNHA 674 (695)
Q Consensus 603 l~-~p~ILILDEaTSaLD~-~tE~~I~~~L~~~~~~~~~~~TvIiIaHrl-sti~~-aD~Ivv-L~~G~Ive~Gth~ 674 (695)
++ +|++|++||+..-.+. .+...+.+.+..... .++++|+.||+. ..+.. .+++.- ++.|.+++.+.++
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~---~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHD---SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT---TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHH---CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 45 8999999999988775 566666677766542 367889999984 33332 344433 5667777666543
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.90 E-value=5.2e-06 Score=89.25 Aligned_cols=61 Identities=16% Similarity=0.118 Sum_probs=46.2
Q ss_pred ccCCccchhHHHHHHhhcCCcEEEEe-ccccccCcccchhhhhHHHhhhccccCcceEEEEe--eeccc
Q 005467 587 LLSGGQKQRIAIARAILRDPAILLLD-EATSALDSESEHYVKGVLHALRNDCKTKRTVIVIA--HRLST 652 (695)
Q Consensus 587 ~LSGGQkQRIaIARAll~~p~ILILD-EaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIa--Hrlst 652 (695)
.+|+|++|++. |.+...++-++++| ++++++|.+....+.+.+.+.. .++.+|+|. |++..
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~----~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF----KDLPFLVVINKIDVAD 294 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT----TTSCEEEEECCTTTCC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc----CCCCEEEEEECcccCC
Confidence 47899999887 66667888899999 9999888887766666665542 257888888 66643
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.87 E-value=1.1e-06 Score=93.54 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=53.0
Q ss_pred ceeeeeeeEeecCcE--EEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc-chhHHHHhhhccccC
Q 005467 466 PILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD-LDIRWLREKIGFVGQ 533 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~--vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~-i~~~~lR~~I~~V~Q 533 (695)
.+++.++..|+.|+. +.+.||+|+||||+++.+++...+..|.+.+.+.+..+ ...+.+|+.+..++|
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~ 102 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAS 102 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHh
Confidence 589999999999998 99999999999999999999988877765555544433 235566666655444
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.87 E-value=4.3e-05 Score=81.90 Aligned_cols=37 Identities=27% Similarity=0.574 Sum_probs=29.4
Q ss_pred cCc--EEEEEeecCCChhhHHHHHHhhhcCCC--ceEEEcC
Q 005467 477 ANE--VVAIVGLSGSGKSTFVNLLLRLYEPSD--GQIYIDG 513 (695)
Q Consensus 477 ~Ge--~vAIVG~SGSGKSTLl~LL~rly~p~~--G~I~idG 513 (695)
++. .+.|+||+|+||||+++.+.+...+.. .-+.+|.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~ 81 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING 81 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC
Confidence 456 899999999999999999999987753 3344443
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.87 E-value=1.8e-05 Score=86.94 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=38.7
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i 519 (695)
++.+++++|++||||||++..|++.+.+..++|.+-+.|....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~ 138 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP 138 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch
Confidence 6899999999999999999999999999999999877776543
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.8e-05 Score=84.56 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=27.3
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~ 506 (695)
+++..+.|.||+|+|||||++.+.+...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999887643
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.80 E-value=1.8e-05 Score=79.64 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=35.5
Q ss_pred eeeeeeEee---cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC
Q 005467 468 LNHVCLTIE---ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516 (695)
Q Consensus 468 L~~isl~I~---~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di 516 (695)
|+++|++++ +|..++|.|++||||||+++.|...+.+ .+++.....+-
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~ 63 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPG 63 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCC
Confidence 666666665 8999999999999999999999999998 77887655443
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.76 E-value=3.5e-05 Score=81.37 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=30.5
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+.|+++.--+++|+.+.|.|++|+||||++.-++.-
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 457777666999999999999999999998877753
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.75 E-value=3.3e-05 Score=80.15 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=43.8
Q ss_pred CccchhHHHHHHhhcCCcEEEEeccccccCcccc------hhhhhHHHhhhcccc-----CcceEEEEeeecccc-----
Q 005467 590 GGQKQRIAIARAILRDPAILLLDEATSALDSESE------HYVKGVLHALRNDCK-----TKRTVIVIAHRLSTI----- 653 (695)
Q Consensus 590 GGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE------~~I~~~L~~~~~~~~-----~~~TvIiIaHrlsti----- 653 (695)
+++++|-.+++|...+|.+|++||+.+-++.... ..++..+.....+.. .+..+|..|+++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 4567777888888889999999999988776432 222222221111100 123466678876543
Q ss_pred cccCeEEEee
Q 005467 654 KAVDRIVVID 663 (695)
Q Consensus 654 ~~aD~IvvL~ 663 (695)
+++|+++.+.
T Consensus 178 ~R~~~~i~~~ 187 (297)
T 3b9p_A 178 RRFTKRVYVS 187 (297)
T ss_dssp HHCCEEEECC
T ss_pred hhCCeEEEeC
Confidence 3577776654
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.74 E-value=3e-05 Score=75.56 Aligned_cols=75 Identities=24% Similarity=0.414 Sum_probs=57.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhh-------------cCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY-------------EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 546 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly-------------~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI 546 (695)
.+.|+||||||||||++-|+.-+ +|-.|++ ||+|+.-++.+.+.+.+ .++-+|-.+.+..|
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~i---~~g~flE~~~~~g~- 76 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGN- 76 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETTE-
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHHH---HcCCEEEEEEEcCc-
Confidence 37899999999999999887554 4567886 99999999999987765 56788888888877
Q ss_pred cccCCcCCCchhHHHHHH
Q 005467 547 MYGCPKDVKNEDIEWAAK 564 (695)
Q Consensus 547 ~~g~~~~~~~eei~~A~~ 564 (695)
.||- +.+.+.++++
T Consensus 77 ~YGt----~~~~v~~~l~ 90 (186)
T 1ex7_A 77 YYGS----TVASVKQVSK 90 (186)
T ss_dssp EEEE----EHHHHHHHHH
T ss_pred eeee----ecceeeehhh
Confidence 6772 2344554443
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.70 E-value=8.2e-06 Score=87.15 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=52.9
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~ 518 (695)
+.+++..+|.. ..+++++++++++|.+++|+|++|+||||+++.|++.+.+.+|+|.+-+.|...
T Consensus 32 e~~~~~~~~~~---~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 32 ESRHPRHQALS---TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HCCCHHHHHHH---HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred hcCCchhhhHH---HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 34444444432 358899999999999999999999999999999999999999999887776643
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=7.5e-06 Score=80.96 Aligned_cols=42 Identities=29% Similarity=0.260 Sum_probs=37.9
Q ss_pred eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCc--eEEEcCc
Q 005467 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGF 514 (695)
Q Consensus 473 l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G--~I~idG~ 514 (695)
+.+++|..++|+|++||||||+++.|.+.+.|..| .+.+||.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 45788999999999999999999999999998888 8888863
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.68 E-value=7.3e-06 Score=93.08 Aligned_cols=81 Identities=10% Similarity=0.110 Sum_probs=50.4
Q ss_pred EEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhcc
Q 005467 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGF 530 (695)
Q Consensus 451 ~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~ 530 (695)
-.++|..+|.. ..+++++++++ +|+.++|+||+|+||||+++.+.+...+..|+|.++|..-..--....++.+|.
T Consensus 85 G~~~vk~~i~~---~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~ 160 (543)
T 3m6a_A 85 GLEKVKERILE---YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGA 160 (543)
T ss_dssp SCHHHHHHHHH---HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----------------
T ss_pred cHHHHHHHHHH---HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhcc
Confidence 34555555532 34788888888 899999999999999999999999999999999988854321112233455666
Q ss_pred ccCCc
Q 005467 531 VGQEP 535 (695)
Q Consensus 531 V~Qd~ 535 (695)
++|..
T Consensus 161 ~~~~~ 165 (543)
T 3m6a_A 161 MPGRI 165 (543)
T ss_dssp ---CH
T ss_pred CchHH
Confidence 66543
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=6.6e-06 Score=80.09 Aligned_cols=70 Identities=19% Similarity=0.279 Sum_probs=41.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhh------cCCCceEEEcCc--cCCcchh--------HHHHhhhccccCCceeeeeecc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY------EPSDGQIYIDGF--PLTDLDI--------RWLREKIGFVGQEPQLLQMDIK 543 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly------~p~~G~I~idG~--di~~i~~--------~~lR~~I~~V~Qd~~LF~~TI~ 543 (695)
.++|+|++||||||++++|.+.+ +|..|...++.. +-...+. ..+++....+.|+..++++++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 68999999999999999999943 444443333321 1111111 1123334566777899999999
Q ss_pred cccccc
Q 005467 544 SNIMYG 549 (695)
Q Consensus 544 eNI~~g 549 (695)
+|+.|.
T Consensus 82 ~~~~~~ 87 (205)
T 2jaq_A 82 EDPIFM 87 (205)
T ss_dssp THHHHH
T ss_pred hhHHHH
Confidence 998875
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.65 E-value=2.1e-05 Score=74.61 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=28.9
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG 513 (695)
.|+.++|+|+|||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999999854 66775
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=8.5e-06 Score=79.52 Aligned_cols=59 Identities=22% Similarity=0.438 Sum_probs=39.1
Q ss_pred eeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh----hhcC----CCceEEEcCccCC
Q 005467 456 SFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEP----SDGQIYIDGFPLT 517 (695)
Q Consensus 456 sF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r----ly~p----~~G~I~idG~di~ 517 (695)
+|+|++- .++++++|++.+++ +++++|++|+|||||++.+.+ -|.| +.+.+.++|..+.
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~ 72 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 72 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEE
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEE
Confidence 4677753 36899999998887 589999999999999999986 2333 4466666665443
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.61 E-value=2.6e-05 Score=81.80 Aligned_cols=153 Identities=17% Similarity=0.168 Sum_probs=78.2
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE-cCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI-DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 554 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i-dG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~ 554 (695)
.++.++||||++|+|||||++.|.|.- +.+ .+.+-. ..++..|++.|+.. .+.+-..+..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~--------~i~~iDTpG~ 66 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAY--------QAIYVDTPGL 66 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTE--------EEEEESSSSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCe--------eEEEEECcCC
Confidence 345589999999999999999999853 222 111111 11234566666543 1122111111
Q ss_pred CchhHHHHHHHhhHhHhHhcCCCCc---cccc---cccccCCccchhHHHHHHhh--cCCcEEEEeccccccCccc-chh
Q 005467 555 KNEDIEWAAKQAYVHEFILSLPCGY---ETLV---DDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDSES-EHY 625 (695)
Q Consensus 555 ~~eei~~A~~~a~l~~fI~~LP~G~---dT~v---ge~~LSGGQkQRIaIARAll--~~p~ILILDEaTSaLD~~t-E~~ 625 (695)
.. +-...+.. ++.......+ |..+ ....+|+|++ .+++++- ..|.|+++ +-+|... ...
T Consensus 67 ~~-~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~ 134 (301)
T 1ega_A 67 HM-EEKRAINR----LMNKAASSSIGDVELVIFVVEGTRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKAD 134 (301)
T ss_dssp CH-HHHHHHHH----HHTCCTTSCCCCEEEEEEEEETTCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHH
T ss_pred Cc-cchhhHHH----HHHHHHHHHHhcCCEEEEEEeCCCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHH
Confidence 10 11111111 1221112222 2211 1123888875 5677776 67999998 7889887 455
Q ss_pred hhhHHHhhhccccCcceEEEEeeecccccc-cCeE
Q 005467 626 VKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRI 659 (695)
Q Consensus 626 I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~I 659 (695)
+.+.+.++.+......++.+.||.-..+.. +|.|
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 666666654321111355555666555432 4443
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0001 Score=77.58 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=25.3
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~ 505 (695)
++..+.|.||+|+|||||++.+.+...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35689999999999999999999987654
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00024 Score=71.36 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=23.7
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDG 507 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G 507 (695)
+++|+|++|+|||||++.|+|-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999986665554
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=3.7e-05 Score=82.35 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=38.1
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~ 518 (695)
+++.+++|+|++|||||||++.|.|.+.|.+|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 4688999999999999999999999999999999998887654
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00033 Score=77.39 Aligned_cols=171 Identities=18% Similarity=0.232 Sum_probs=97.6
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCc-eEEEcCccCCcchhHHHHhhh----ccccCCceeeeee
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDGFPLTDLDIRWLREKI----GFVGQEPQLLQMD 541 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G-~I~idG~di~~i~~~~lR~~I----~~V~Qd~~LF~~T 541 (695)
-|+.+.--+++|+.+.|.|++|+||||++.-++.-.....| .+.+-.. +.+.+.+.+++ +-++.+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl---E~~~~~l~~R~~~~~~~i~~~------- 258 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL---EMPAAQLTLRMMCSEARIDMN------- 258 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES---SSCHHHHHHHHHHHHTTCCTT-------
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC---CCCHHHHHHHHHHHHcCCCHH-------
Confidence 45555545899999999999999999999888877654333 4444221 23455555442 122221
Q ss_pred ccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccc-cccCCccchhHHHHHHhh--cCCcEEEEecccccc
Q 005467 542 IKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-DLLSGGQKQRIAIARAIL--RDPAILLLDEATSAL 618 (695)
Q Consensus 542 I~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge-~~LSGGQkQRIaIARAll--~~p~ILILDEaTSaL 618 (695)
.++-| ..++++..+..+.++ .+...|- .+-+ ..+|.. +..+.+|.+. .+++++|+|..+.-.
T Consensus 259 ---~l~~g---~l~~~~~~~~~~a~~---~l~~~~l----~i~d~~~~s~~--~l~~~~~~l~~~~~~~lIvID~l~~~~ 323 (444)
T 2q6t_A 259 ---RVRLG---QLTDRDFSRLVDVAS---RLSEAPI----YIDDTPDLTLM--EVRARARRLVSQNQVGLIIIDYLQLMS 323 (444)
T ss_dssp ---TCCGG---GCCHHHHHHHHHHHH---HHHTSCE----EEECCTTCBHH--HHHHHHHHHHHHSCCCEEEEECGGGCB
T ss_pred ---HHhCC---CCCHHHHHHHHHHHH---HHhcCCE----EEECCCCCCHH--HHHHHHHHHHHHcCCCEEEEcChhhcC
Confidence 12212 345555444333322 2222221 1111 234443 3456777776 379999999998766
Q ss_pred Cc------ccc----hhhhhHHHhhhccccCcceEEEEee--e---------c--c------cc-cccCeEEEeeC
Q 005467 619 DS------ESE----HYVKGVLHALRNDCKTKRTVIVIAH--R---------L--S------TI-KAVDRIVVIDD 664 (695)
Q Consensus 619 D~------~tE----~~I~~~L~~~~~~~~~~~TvIiIaH--r---------l--s------ti-~~aD~IvvL~~ 664 (695)
+. +++ ..+.+.|..+.+. .+.+||+++| | + + .+ ..||.|+.|..
T Consensus 324 ~~~~~~~~~~r~~~i~~i~~~Lk~lAke--~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 324 GPGSGKSGENRQQEIAAISRGLKALARE--LGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp CC-------CHHHHHHHHHHHHHHHHHH--HTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHHHH--hCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 44 121 2344455554432 3689999998 1 1 1 23 35999999953
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=2.6e-05 Score=86.17 Aligned_cols=60 Identities=33% Similarity=0.402 Sum_probs=39.7
Q ss_pred cEEEEEeecCCChhhHHHHHHhhh------------cCCCceEEEcCccCCcchhHHHHhhhccccCCceee
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLY------------EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL 538 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly------------~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF 538 (695)
-++||||+||+|||||++.|+|.. +|.+|.+.++|.++.-+|...+|+..++.+|....|
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~ 252 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKY 252 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCS
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHH
Confidence 479999999999999999999985 378899999999876666666666666665655444
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00074 Score=72.38 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=34.4
Q ss_pred eeeeeeeE---eecCcEEEEEeecCCChhhHHHHHHhhhcCCC-ceEEEcCc
Q 005467 467 ILNHVCLT---IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYIDGF 514 (695)
Q Consensus 467 vL~~isl~---I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~-G~I~idG~ 514 (695)
-|+.+ +. +++|+.+.|.|++|||||||+.-++.-..... .-++++..
T Consensus 50 ~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 50 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45554 33 88999999999999999999977776554333 34556664
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.44 E-value=4.9e-05 Score=79.60 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=52.8
Q ss_pred EEEEEEeeecCCCCccceeee-eeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc
Q 005467 450 VQFVNISFHYPSRPTVPILNH-VCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~-isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i 519 (695)
+..+++...|++.. ++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...-
T Consensus 75 ~~~~~l~~~~~~~~-----~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 75 IVYDELSNLFGGDK-----EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHHHHHTTCSC-----CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHHHHHhcccc-----ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 44566666775421 46 888877 999999999999999999999999999999999998887643
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00045 Score=71.76 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=27.9
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCceE
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I 509 (695)
...+.|+||+|+||||+++.+.+...+.+|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 36899999999999999999999998766643
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00037 Score=73.39 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=25.0
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhh
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
-+++|+.+.|.||+||||||++.-++.-
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999877753
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00021 Score=69.61 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=25.7
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCceE
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I 509 (695)
..+.|.||+|+|||||++.+........+.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 6899999999999999999998776543333
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.35 E-value=4.9e-05 Score=73.24 Aligned_cols=41 Identities=37% Similarity=0.511 Sum_probs=35.1
Q ss_pred eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE-EEcC
Q 005467 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDG 513 (695)
Q Consensus 473 l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I-~idG 513 (695)
+..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+|+
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 3456899999999999999999999999998888876 4554
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.35 E-value=6.8e-05 Score=72.46 Aligned_cols=50 Identities=20% Similarity=0.406 Sum_probs=27.9
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh----hhcCC----CceEEEcCccC
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR----LYEPS----DGQIYIDGFPL 516 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r----ly~p~----~G~I~idG~di 516 (695)
.+++++|++.++. +++++|++|+|||||++.+.+ -|.|+ .+++.++|..+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 3789999998877 789999999999999999987 23333 34555555433
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00017 Score=71.55 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=25.6
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~ 505 (695)
++..+.|+||+|+||||+++.+.+.....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 68899999999999999999999877543
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00022 Score=70.07 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=28.9
Q ss_pred eeeeeeeEeecCc---EEEEEeecCCChhhHHHHHHhhhcCC
Q 005467 467 ILNHVCLTIEANE---VVAIVGLSGSGKSTFVNLLLRLYEPS 505 (695)
Q Consensus 467 vL~~isl~I~~Ge---~vAIVG~SGSGKSTLl~LL~rly~p~ 505 (695)
+++.+.-.+..|+ .+.|.||+|+||||+++.+.+.+...
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3444443444454 79999999999999999999887643
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00032 Score=70.38 Aligned_cols=27 Identities=41% Similarity=0.555 Sum_probs=22.9
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHh
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
.+.+|+.++++|||||||||++.+.+.
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 456799999999999999998876643
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00064 Score=69.78 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.6
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++++..+.|.||+|+||||+++.+++..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567779999999999999999998865
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=3e-05 Score=76.21 Aligned_cols=86 Identities=22% Similarity=0.293 Sum_probs=50.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeec-cccccc---cC----C
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI-KSNIMY---GC----P 551 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI-~eNI~~---g~----~ 551 (695)
.++|+|++||||||+++.|.+.+.+....+.+ + +++. |..++ .+|++. +. .
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~-------------------~-~~~~-~~~~~~~~~~r~~~~~~~~~~~ 60 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT-------------------L-AFPR-YGQSVAADIAAEALHGEHGDLA 60 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE-------------------E-ESSE-EEEEEEEEEHHHHEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE-------------------E-eecC-CCCcchhhHHHHHHcccccccC
Confidence 68999999999999999999999754333321 1 1222 33344 444432 10 0
Q ss_pred cCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc
Q 005467 552 KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 586 (695)
Q Consensus 552 ~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~ 586 (695)
.+...+.+..++..++..+.|..++.+.++.|.|+
T Consensus 61 ~~~~~~~~~~~~~r~~~~~~i~~~l~~g~~vi~D~ 95 (214)
T 1gtv_A 61 SSVYAMATLFALDRAGAVHTIQGLCRGYDVVILDR 95 (214)
T ss_dssp EEHHHHHHHHHHHHHEEHHHHHHEEEEEEEEEEEE
T ss_pred CCHhHHHHHHHHHHhhhHHHHHHHhhCCCEEEECC
Confidence 01122333334444444566777666677888775
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00017 Score=70.35 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=30.1
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di 516 (695)
..+++|+|++||||||+++.|.+.+ |...+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 5689999999999999999999988 6677776554
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00033 Score=73.14 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=30.7
Q ss_pred eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 473 LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 473 l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
+.++++..+.|.||+|+||||+++.+.+... .+-+.++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 4567899999999999999999999999763 3444444
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.25 E-value=9.8e-05 Score=70.18 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.5
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++|.+++|||++|+|||||++.+.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999999864
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00014 Score=70.05 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=27.2
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHhh
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999999999999987
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00015 Score=73.80 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=35.1
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~ 517 (695)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+||-.++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 466788999999999999999999999885 367888885543
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00015 Score=73.62 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=32.5
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~ 517 (695)
.++++++..++| +.|+||+|+||||+++.+.+.+... -+.+++.++.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~ 82 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFV 82 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSST
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHH
Confidence 455666666666 9999999999999999999988532 3667765543
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=2.2e-05 Score=84.60 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=23.0
Q ss_pred ccCCccchhHHHHHHh---hc--CCcEEEEeccc
Q 005467 587 LLSGGQKQRIAIARAI---LR--DPAILLLDEAT 615 (695)
Q Consensus 587 ~LSGGQkQRIaIARAl---l~--~p~ILILDEaT 615 (695)
++||||+||++++|+| ++ +++++++||||
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 7999999999999999 87 89999999997
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.06 E-value=9.5e-05 Score=78.26 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=30.1
Q ss_pred ceeeeeeeEeecC--cEEEEEeecCCChhhHHHHHHhhhc
Q 005467 466 PILNHVCLTIEAN--EVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 466 ~vL~~isl~I~~G--e~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.+++.+.-.+..| ..+.|.||+|+||||+++.+.+.+.
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3556665556666 4499999999999999999999874
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00026 Score=72.10 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=25.6
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+.++....++| +.|.||+|+||||+++.+.+..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 34444455555 8899999999999999999854
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00041 Score=66.72 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=30.8
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCC---ceEEEcCccC
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDGFPL 516 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~---G~I~idG~di 516 (695)
-..++|+|+|||||||+++.|.+.+.+.. |.|..++.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~ 47 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM 47 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCcc
Confidence 35899999999999999999999876543 6777776553
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.94 E-value=6.3e-05 Score=80.94 Aligned_cols=90 Identities=24% Similarity=0.244 Sum_probs=43.9
Q ss_pred cceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC-cchhHHHH
Q 005467 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT-DLDIRWLR 525 (695)
Q Consensus 447 ~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~-~i~~~~lR 525 (695)
.+.|.|+|++..|.. +.++++++|+| +|||++|+|||||++.|.+.-.+..|.+..++.+.. .+..
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~---- 81 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQI---- 81 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC---------------CEEE----
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeE----
Confidence 467899999999864 35889999976 999999999999999998876665555544433221 1110
Q ss_pred hhhccccCCce-eeeeecccccccc
Q 005467 526 EKIGFVGQEPQ-LLQMDIKSNIMYG 549 (695)
Q Consensus 526 ~~I~~V~Qd~~-LF~~TI~eNI~~g 549 (695)
....+..|+.- -..-+|.|+..+|
T Consensus 82 ~~~~~~~~~~~~~~~l~i~DTpG~g 106 (361)
T 2qag_A 82 EASTVEIEERGVKLRLTVVDTPGYG 106 (361)
T ss_dssp EEEEEC----CEEEEEEEEC-----
T ss_pred EEEEEEeecCCcccceEEEEecccc
Confidence 12233444332 2345666766665
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00041 Score=64.81 Aligned_cols=32 Identities=31% Similarity=0.598 Sum_probs=24.9
Q ss_pred eeeEeecCcEEEEEeecCCChhhHHHHHH-hhhc
Q 005467 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLYE 503 (695)
Q Consensus 471 isl~I~~Ge~vAIVG~SGSGKSTLl~LL~-rly~ 503 (695)
.++++.+| ..+|+||+||||||++..|. .+|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34444454 89999999999999999987 4554
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00072 Score=74.87 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=38.0
Q ss_pred CCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc
Q 005467 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 653 (695)
Q Consensus 589 SGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti 653 (695)
.+.|++-...++..+++++++|+......-.......+.+.+++ .++.+|+|.++....
T Consensus 86 ~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~------~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 86 EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR------TKKPVVLAVNKLDNT 144 (456)
T ss_dssp -CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT------CCSCEEEEEECC---
T ss_pred hHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH------cCCCEEEEEECccch
Confidence 34588888899999999998888755444333334445444433 357899998887754
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00064 Score=73.21 Aligned_cols=59 Identities=27% Similarity=0.285 Sum_probs=44.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhH
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 559 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei 559 (695)
+++|||++|+|||||++.|.|.. + ++.+++. .|+..|+.+. .++++++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~------------------~Ti~pn~g~~---~v~~~~l 50 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPF------------------ATIDKNVGVV---PLEDERL 50 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCG------------------GGGSTTEEEE---ECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCC------------------ceeccceeeE---ecChHHH
Confidence 58999999999999999999985 3 1112211 1888888776 3567888
Q ss_pred HHHHHHhhHhH
Q 005467 560 EWAAKQAYVHE 570 (695)
Q Consensus 560 ~~A~~~a~l~~ 570 (695)
..+++.++.++
T Consensus 51 ~~~~~~~~~~~ 61 (368)
T 2dby_A 51 YALQRTFAKGE 61 (368)
T ss_dssp HHHHHHHCBTT
T ss_pred HHHHHHhcccc
Confidence 88888887654
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00081 Score=72.81 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=38.2
Q ss_pred cceeeeeeeEee---cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC
Q 005467 465 VPILNHVCLTIE---ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (695)
Q Consensus 465 ~~vL~~isl~I~---~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG 513 (695)
.+++-|+ +... .+..++|+|+|||||||+++.++..+.+..+.|.+-+
T Consensus 20 ~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 20 GLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4566665 3322 6778999999999999999999998888888887754
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00078 Score=65.58 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0081 Score=64.53 Aligned_cols=39 Identities=23% Similarity=0.420 Sum_probs=28.8
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE-EEcC
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDG 513 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I-~idG 513 (695)
+++|+.+.|.||+|||||||+.-++.-.....|.+ +++.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 78999999999999999999876665443333443 4443
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0005 Score=74.59 Aligned_cols=41 Identities=29% Similarity=0.490 Sum_probs=34.9
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhh-----------hcCCCceEEEcCc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRL-----------YEPSDGQIYIDGF 514 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rl-----------y~p~~G~I~idG~ 514 (695)
.++.|.+++|||++|+|||||++.|.|. .+|+.|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 5678899999999999999999999998 6788898888764
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0021 Score=68.46 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=32.4
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d 515 (695)
.+|..+.|.||+|+||||+++.+.+.......-+.+++..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 4577899999999999999999999987554556666544
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00091 Score=71.24 Aligned_cols=29 Identities=34% Similarity=0.572 Sum_probs=25.3
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
..+..+.|.||+|+||||+++.+.+....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45778999999999999999999987743
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00054 Score=64.24 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.7
Q ss_pred cEEEEEeecCCChhhHHHHHHhhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly 502 (695)
-+++|+|++|+|||||++.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999999864
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0032 Score=59.42 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=24.5
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
..+.|+|++||||||+.+.|... .-|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 46899999999999999999983 23555554
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00072 Score=64.66 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=24.1
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998765
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00047 Score=65.70 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=21.0
Q ss_pred cEEEEEeecCCChhhHHHHHHhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rl 501 (695)
-+++++|++|+|||||++.+.+-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999974
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00027 Score=75.32 Aligned_cols=38 Identities=37% Similarity=0.441 Sum_probs=34.6
Q ss_pred ceeeeeeeEeecCcE--EEEEeecCCChhhHHHHHHhhhc
Q 005467 466 PILNHVCLTIEANEV--VAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~--vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.+++++++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478899999999999 99999999999999999998753
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00097 Score=63.24 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=24.2
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.|..+.|+|+|||||||+.+.|..-+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998874
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00099 Score=62.53 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=22.0
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.++|+|++||||||+++.|...+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.011 Score=59.28 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=23.2
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++..-+.|.||+|+||||+++.+.+.+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345568999999999999999999865
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00076 Score=64.44 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCC
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPS 505 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~ 505 (695)
+++|+|++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999875443
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0047 Score=56.90 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=23.8
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+.+..+.|.||+|+|||++++.+.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 4566799999999999999999987654
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0015 Score=62.67 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=24.6
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++..+.|+|++||||||+.+.|..-+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999999866
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0016 Score=68.38 Aligned_cols=34 Identities=32% Similarity=0.307 Sum_probs=30.6
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
..+++..+.+ .|+.++|+|+||+||||++..|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4788888888 799999999999999999998887
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0019 Score=67.02 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=29.8
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG 513 (695)
++|..+.|+|||||||||+++.|..-++ .|.+.|++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3467899999999999999999988663 46677776
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0014 Score=62.59 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.2
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998876
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0014 Score=62.52 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=23.9
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+|..+.|.|++||||||+.+.|..-+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998764
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.018 Score=59.45 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=24.2
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+++..+.|.||+|+||||+++.+.+.+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3466799999999999999999988774
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0054 Score=63.68 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=22.7
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+...+.+.||+|+|||++++.+++-.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34468889999999999999999887
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0019 Score=61.80 Aligned_cols=36 Identities=42% Similarity=0.575 Sum_probs=27.9
Q ss_pred EEEEEeecCCChhhHHHHHHh-h----hcCCCc----eEEEcCcc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR-L----YEPSDG----QIYIDGFP 515 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r-l----y~p~~G----~I~idG~d 515 (695)
+++|+|++|+|||||++-+.+ - |.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 699999999999999975544 3 677777 66677643
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.017 Score=60.78 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=24.5
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+|..-+.|.||+|+||||+++.+++..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3466789999999999999999999876
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0053 Score=61.30 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=34.0
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeee-----------cccccccCeEEEee
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR-----------LSTIKAVDRIVVID 663 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHr-----------lsti~~aD~IvvL~ 663 (695)
+++++++||+-- |+.+ +.+.+..+.+ .+.+||++.|+ ...+..||.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~---~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAE---NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHH---TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHh---CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999963 5542 3334444432 26899999993 23356799998764
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0033 Score=61.02 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=27.7
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEE
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~ 510 (695)
+|..++|.|++||||||+++.|..-+... |.+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~ 35 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELK-RDVY 35 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTT-SCEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhc-CCEE
Confidence 57789999999999999999999988653 4443
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0021 Score=63.23 Aligned_cols=32 Identities=41% Similarity=0.471 Sum_probs=26.4
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG 513 (695)
++-+++|+|++||||||+++.|.+ + |-..+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c----CCEEEEc
Confidence 456899999999999999999998 2 5566664
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0018 Score=64.82 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=24.8
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
-++|.+++|+|++||||||+.+.|.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999999999854
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.002 Score=61.95 Aligned_cols=27 Identities=30% Similarity=0.553 Sum_probs=24.7
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++..++|+|++||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999876
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0014 Score=62.56 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=24.6
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.++..+.|+|++||||||+.+.|..-+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998776
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0019 Score=62.61 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=24.9
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+|..++|.|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999987
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0022 Score=63.03 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=23.7
Q ss_pred eeeEeecCcEEEEEeecCCChhhHHHHHH-hhh
Q 005467 471 VCLTIEANEVVAIVGLSGSGKSTFVNLLL-RLY 502 (695)
Q Consensus 471 isl~I~~Ge~vAIVG~SGSGKSTLl~LL~-rly 502 (695)
.++++.+ ...+|+||+||||||++..|. -+|
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3444445 489999999999999999875 344
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.013 Score=62.39 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=23.8
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++...+.|.||+|+||||+++.+++..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456779999999999999999998765
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0024 Score=62.25 Aligned_cols=28 Identities=32% Similarity=0.480 Sum_probs=25.1
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
++|..++|.|++||||||+.+.|...+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999998653
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0011 Score=63.92 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=26.0
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.++++..++|+|++||||||+.+.|...+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678899999999999999999999877
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.025 Score=71.40 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=33.9
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE-EEcCcc
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI-YIDGFP 515 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I-~idG~d 515 (695)
+++|+.+.|.||+|+|||||+.-++.-.....|.+ ++++..
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ee 770 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 770 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccc
Confidence 89999999999999999999999988777666655 445543
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0081 Score=61.22 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=23.5
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++...+.|.||+|+||||+++.+....
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455679999999999999999999864
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0083 Score=66.17 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=31.1
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
|+.+.-=++||+.+.|.|++|+||||++--++.-.--..+.+.+-
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 444332478999999999999999999766655443233345443
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0015 Score=62.20 Aligned_cols=37 Identities=27% Similarity=0.566 Sum_probs=28.2
Q ss_pred CcEEEEEeecCCChhhHHHHHHhh----hcCCCc----eEEEcCc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRL----YEPSDG----QIYIDGF 514 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rl----y~p~~G----~I~idG~ 514 (695)
.=+++++|++|+|||||++.+.+- |.|+.| .+.+++.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~ 60 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGF 60 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCE
Confidence 347999999999999999999875 456666 4444443
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.029 Score=61.74 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=24.2
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+..-+.|.||+|+||||+++.+.+..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999876
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0021 Score=60.11 Aligned_cols=19 Identities=58% Similarity=0.976 Sum_probs=18.3
Q ss_pred EEEEEeecCCChhhHHHHH
Q 005467 480 VVAIVGLSGSGKSTFVNLL 498 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL 498 (695)
.++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0027 Score=61.99 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=25.4
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
++|..++|+|++||||||+.+.|..-+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999998764
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.014 Score=62.38 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.9
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++..-+.|.||+|+||||+++.+++..
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455679999999999999999999876
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0024 Score=60.50 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.++|+|++||||||+.+.|..-+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999999876
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.004 Score=60.31 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.9
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|.|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999876
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0099 Score=57.34 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=21.1
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+.|.||+|+||||+++.+...+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999998865
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0035 Score=59.87 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=27.6
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCC---ceEEEcC
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSD---GQIYIDG 513 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~---G~I~idG 513 (695)
.+++|+|+|||||||++..|.+.+.... |-|..|.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 4799999999999999999999876543 4444443
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.034 Score=61.07 Aligned_cols=40 Identities=25% Similarity=0.358 Sum_probs=32.9
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di 516 (695)
++.+++++|++|+||||++.-|+..+....-+|.+=..|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5789999999999999999999999987666776544444
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.006 Score=64.16 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=27.6
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
|+.+---+++|..+.|.||+|+|||||+.-++.-
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3333246889999999999999999999988753
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0012 Score=71.13 Aligned_cols=58 Identities=31% Similarity=0.418 Sum_probs=44.0
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
+.+|+++|..+|+++++|||| |.++ +..+++.. ..|.+++.++|..+....+||++.|
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~---~~~~l~~~----~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLET---VETALRAA----ETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHH---HHHHHHHH----TTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHH---HHHHHHHH----hcCCEEEEEECcchHHHHHHHHHHh
Confidence 579999999999999999999 6554 34455544 2468999999987766667776544
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=95.94 E-value=0.02 Score=59.96 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.4
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.|..-+.|.||+|+||||+++.++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 355679999999999999999998864
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.003 Score=60.03 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=19.5
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+++..+.|.|++||||||+.+.|...+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4578899999999999999999987653
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.013 Score=62.30 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.1
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+..+.|.||+|+||||+++.+.+...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 55799999999999999999998763
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0037 Score=59.66 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=22.4
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.+.|.|++||||||+++.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999875
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0043 Score=66.47 Aligned_cols=36 Identities=36% Similarity=0.508 Sum_probs=31.1
Q ss_pred CcEEEEEeecCCChhhHHHHHHh-----------hhcCCCceEEEcC
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLR-----------LYEPSDGQIYIDG 513 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~r-----------ly~p~~G~I~idG 513 (695)
|-+++|||.+|+|||||++.|.+ -.+|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45799999999999999999999 3468888888776
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0038 Score=59.67 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.8
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++..++|+|++||||||+.+.|..-+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998766
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0037 Score=63.48 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=22.2
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+.++|+||+||||||+.+.|++-+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999998763
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0049 Score=60.74 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=24.5
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
++|-.+.|+|++||||||+.+.|..-+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3577899999999999999999998773
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0035 Score=65.13 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=20.8
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
++-++||.|+|||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999998664
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.005 Score=60.76 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=24.1
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
++..+.|+|++||||||+.+.|..-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998774
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0054 Score=60.82 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.2
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.++..+.|+|++||||||+.+.|..-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999766
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.016 Score=64.84 Aligned_cols=157 Identities=15% Similarity=0.194 Sum_probs=76.9
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCC-CceEEEcCccCCcchhHHHHhhh-ccccCCceeeeeeccc-
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPS-DGQIYIDGFPLTDLDIRWLREKI-GFVGQEPQLLQMDIKS- 544 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~-~G~I~idG~di~~i~~~~lR~~I-~~V~Qd~~LF~~TI~e- 544 (695)
|+.+.--+++|+.+.|.|++|+||||++.-++.-.-.. .+.+.+-.. +.+.+.+.+++ +....-+ ..+
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~---E~s~~~l~~r~~~~~~~~~------~~~~ 302 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML---EESVEETAEDLIGLHNRVR------LRQS 302 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES---SSCHHHHHHHHHHHHTTSC------CTTC
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec---cCCHHHHHHHHHHHHcCCC------hhhc
Confidence 44433248999999999999999999977666555433 334443322 23444444332 2111000 000
Q ss_pred -cccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc--CCcEEEEeccccccCcc
Q 005467 545 -NIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR--DPAILLLDEATSALDSE 621 (695)
Q Consensus 545 -NI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~--~p~ILILDEaTSaLD~~ 621 (695)
.+.-| ..+++++.++.+.. +...| + .+-+..=+-...+.++.+|.+.+ +|+++|+|=-+ .+...
T Consensus 303 ~~~~~g---~l~~~~~~~~~~~~-----~~~~~--l--~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~-~l~~~ 369 (503)
T 1q57_A 303 DSLKRE---IIENGKFDQWFDEL-----FGNDT--F--HLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHIS-IVVSA 369 (503)
T ss_dssp HHHHHH---HHHTSHHHHHHHHH-----HTTTC--E--EEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTT-CCCSC
T ss_pred cccccC---CCCHHHHHHHHHHH-----hccCC--E--EEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccch-hcCCC
Confidence 11111 12344444433322 11111 0 01110001123456667777654 59999999544 33221
Q ss_pred ----cc-h---hhhhHHHhhhccccCcceEEEEee
Q 005467 622 ----SE-H---YVKGVLHALRNDCKTKRTVIVIAH 648 (695)
Q Consensus 622 ----tE-~---~I~~~L~~~~~~~~~~~TvIiIaH 648 (695)
++ . .+.+.|.++.+. .+.|||+++|
T Consensus 370 ~~~~~~~~~~~~~~~~Lk~lak~--~~i~vi~~~q 402 (503)
T 1q57_A 370 SGESDERKMIDNLMTKLKGFAKS--TGVVLVVICH 402 (503)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHH--HTCEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH--HCCeEEEEEc
Confidence 22 2 344445444332 4689999988
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.005 Score=60.34 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=20.9
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|.|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999997766
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0047 Score=58.85 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=22.0
Q ss_pred cEEEEEeecCCChhhHHHHHHhhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999999876
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0057 Score=59.31 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.4
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++..++|+|++||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999876
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.039 Score=55.06 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=20.1
Q ss_pred cCc-EEEEEeecCCChhhH-HHHHHhhhc
Q 005467 477 ANE-VVAIVGLSGSGKSTF-VNLLLRLYE 503 (695)
Q Consensus 477 ~Ge-~vAIVG~SGSGKSTL-l~LL~rly~ 503 (695)
.|+ ++.+.|+.|+||||+ +++-..+..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 465 488899999999999 555555543
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.046 Score=53.39 Aligned_cols=53 Identities=13% Similarity=0.109 Sum_probs=32.6
Q ss_pred CCcEEEEeccccccCcc----cchhhhhHHHhhhccccCcceEEEEeeecccccc--cCeEE
Q 005467 605 DPAILLLDEATSALDSE----SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA--VDRIV 660 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~----tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~--aD~Iv 660 (695)
+..+||+|||=.-+.+. .+..+...+...+ ..+..+|++++..+.+.. .|||-
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r---~~~~~iil~tq~~~~l~~~lr~ri~ 145 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR---HQGIDIFVLTQGPKLLDQNLRTLVR 145 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT---TTTCEEEEEESCGGGBCHHHHTTEE
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcC---cCCeEEEEECCCHHHHhHHHHHHhh
Confidence 38899999997654332 1223334444332 456799999999777643 34443
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0065 Score=57.89 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=22.7
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+..++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998866
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0099 Score=63.03 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.0
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCC
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPS 505 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~ 505 (695)
.+.|.||+|+||||+++.+.+.....
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 48999999999999999999887644
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0058 Score=59.23 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=22.9
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+...++|.|++||||||+.+.|..-+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998766
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0054 Score=57.60 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.9
Q ss_pred cEEEEEeecCCChhhHHHHHHhhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly 502 (695)
..++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999866
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.01 Score=64.91 Aligned_cols=42 Identities=33% Similarity=0.411 Sum_probs=32.7
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDL 519 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i 519 (695)
.=++.+.+.|+|++||||||+++.|..-+ |-+.++.-++..+
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~D~~~~~ 295 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNRDTLGSW 295 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCGGGSCSH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEccchHHHH
Confidence 34567899999999999999999988755 6677776565443
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.006 Score=59.82 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.9
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|+|++||||||+.+.|..-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998766
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0064 Score=57.07 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.4
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
-+.++|.|+.||||||+.+.|..-+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998865
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0067 Score=56.71 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=21.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999866
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0067 Score=57.91 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=22.1
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.++|.|++||||||+.+.|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998774
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0089 Score=58.17 Aligned_cols=25 Identities=36% Similarity=0.618 Sum_probs=22.7
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.-.++|+|++||||||+.+.|...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999999875
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0074 Score=60.81 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=23.6
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++-.++|.|++||||||+.+.|..-|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999998776
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0076 Score=60.90 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.1
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
-+++|.|++||||||+.+.|...+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3699999999999999999988553
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.01 Score=55.42 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.5
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
++.-+++++|++|+|||||++-+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999863
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.011 Score=54.64 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=19.8
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999999987
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0046 Score=59.72 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
++++||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6999999999999999999754
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0085 Score=55.25 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0093 Score=61.53 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=21.3
Q ss_pred CcEEEEEeecCCChhhHHHHHHhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
..+++|+|++||||||+.+.|..+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~l 98 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKNL 98 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
Confidence 347999999999999999999953
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0099 Score=54.38 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++-+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.011 Score=58.30 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=23.7
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+|-.+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999999877
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.014 Score=56.82 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=19.3
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 699999999999999998775
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0096 Score=56.70 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.9
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.=+++++|++|+|||||++.+.+-.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0099 Score=54.55 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999998876
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.011 Score=54.66 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.0097 Score=60.79 Aligned_cols=24 Identities=42% Similarity=0.535 Sum_probs=22.0
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+++++|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 699999999999999999998753
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0082 Score=55.42 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++++|++|+|||||++.+.+-.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999987643
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.011 Score=54.23 Aligned_cols=22 Identities=45% Similarity=0.594 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++-+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.011 Score=54.38 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999853
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.012 Score=55.03 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++-+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999875
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.011 Score=60.07 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=24.0
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+++..+.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999998653
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.14 Score=65.58 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=31.7
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcCCCce-EEEcCc
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGF 514 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~-I~idG~ 514 (695)
+++|+.+.|.||+|+|||||+.-++.-.....|. +++++.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E 420 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 420 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 8999999999999999999988877766544443 455554
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.011 Score=54.56 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++-+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=57.63 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=21.2
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|.|++||||||+.+.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=56.10 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.1
Q ss_pred CcEEEEEeecCCChhhHHHHHHhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
--+++++|++|+|||||++.+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999863
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=54.28 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.6
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999985
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.01 Score=55.14 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|+|++|+|||||++.+.+-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 6999999999999999998864
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999997654
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.011 Score=62.65 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=24.5
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+++..+.|+||+|||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999998763
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.011 Score=57.87 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.9
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+.+++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999999876
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.012 Score=55.05 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.9
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++-+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988763
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.016 Score=56.61 Aligned_cols=35 Identities=31% Similarity=0.244 Sum_probs=28.4
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhh
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
..++..-+.+ .|..++|+||||||||||+.-|..-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3567766665 5889999999999999999888754
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.012 Score=54.24 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988753
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.012 Score=55.69 Aligned_cols=23 Identities=43% Similarity=0.525 Sum_probs=20.9
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++++|++|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999998753
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.012 Score=54.87 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.9
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999753
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.011 Score=54.77 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=19.8
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999998753
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.019 Score=56.96 Aligned_cols=29 Identities=31% Similarity=0.567 Sum_probs=26.9
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
++|..+.+-|++||||||+++.|..-+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999999876
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.0091 Score=60.76 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.4
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++++|.+|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.015 Score=55.12 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.012 Score=55.86 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+++++|++|+|||||++.+.+-+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 689999999999999999988664
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.041 Score=61.32 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=23.6
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++...+.|.||+|+|||++++.+....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455569999999999999999998754
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.011 Score=60.65 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=19.6
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
++++||++|+|||||++.|.+-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999988653
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.015 Score=61.56 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.7
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
..++|+|||||||||+.+.|+.-+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999998774
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.014 Score=53.85 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=19.6
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.011 Score=65.20 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=35.6
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i 511 (695)
+++.+ +.+-+|++++|+|+||+|||||++.|.+-.....|.|.+
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 45555 677899999999999999999999999887655555544
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.01 Score=57.54 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=24.6
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
...|+.|.-.+--+++++|++|+|||||++.+.+
T Consensus 14 ~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 14 GTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp -----CGGGSEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cccccccccccCcEEEEECcCCCCHHHHHHHHhc
Confidence 4556666555555899999999999999999987
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.047 Score=56.85 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+.+.||+|+||||+++.+++-.
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHT
T ss_pred EEEeeCcCCCCHHHHHHHHHHHh
Confidence 56777889999999999998876
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.014 Score=54.94 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.014 Score=55.10 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999998864
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.015 Score=54.08 Aligned_cols=21 Identities=14% Similarity=0.407 Sum_probs=19.5
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999999875
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.014 Score=55.36 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=20.6
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.|.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999885
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.02 Score=61.40 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=25.7
Q ss_pred eeeeeEeecCcEEEEEeecCCChhhHHHHHHh
Q 005467 469 NHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 469 ~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
++..++..+ ..++|+||||||||||+..|.=
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 566666666 5899999999999999998863
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.015 Score=54.98 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=19.7
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999986
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.013 Score=58.53 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=23.3
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
.+|..++|-|++||||||+++.|...+..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999999988753
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.07 Score=68.30 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=35.5
Q ss_pred cceeeeee--eEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE
Q 005467 465 VPILNHVC--LTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509 (695)
Q Consensus 465 ~~vL~~is--l~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I 509 (695)
.+.|+++. .-+++|+.+.++||+|||||||+..+.-----..+.+
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~ 1112 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 1112 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 35788877 5799999999999999999999998875444333333
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.015 Score=57.48 Aligned_cols=23 Identities=43% Similarity=0.544 Sum_probs=21.2
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+.|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.12 Score=65.28 Aligned_cols=46 Identities=24% Similarity=0.342 Sum_probs=33.0
Q ss_pred eeeeeeeE---eecCcEEEEEeecCCChhhHHHHHHhhhcCCCc-eEEEcC
Q 005467 467 ILNHVCLT---IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG-QIYIDG 513 (695)
Q Consensus 467 vL~~isl~---I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G-~I~idG 513 (695)
-|+.+ +. +++|+.+.|.||+|+|||||+.-++.-.....+ -++++.
T Consensus 370 ~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~ 419 (1706)
T 3cmw_A 370 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 419 (1706)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred HHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 45554 33 889999999999999999998777655543333 344554
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=94.61 E-value=0.016 Score=53.34 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.4
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.015 Score=55.41 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.033 Score=55.02 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=26.4
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPS 505 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~ 505 (695)
.+|..++|-|++||||||+++.|...+...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999999888643
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.016 Score=53.56 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.5
Q ss_pred CcEEEEEeecCCChhhHHHHHHh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
.=+++++|++|+|||||++-+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44799999999999999999965
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.018 Score=57.36 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=24.0
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
++..+.|+|++||||||+.+.|..-+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998773
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.012 Score=54.83 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.5
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++.+.+
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999875
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.016 Score=54.12 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6999999999999999998763
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.017 Score=53.93 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.9
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998853
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.017 Score=60.44 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.9
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++..++|+||||||||||..-|+.-+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhC
Confidence 35679999999999999999998766
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.039 Score=53.85 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.0
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
-+++|+|++|+|||||++-|.+-..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999987653
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.019 Score=57.82 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=25.8
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
+|..++|.|++||||||+++.|...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999999988864
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.041 Score=61.81 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=33.1
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
....+.++|.+||||||+.+.|.+.+.. .+.+...++.+.+|+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~-------~~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW-------IGVPTKVFNVGEYRREA 78 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-------TTCCEEEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh-------cCCCeEEecccHHHHHh
Confidence 4468999999999999999999987742 23344445666677664
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.018 Score=53.92 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++-+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999998753
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.016 Score=57.51 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=27.1
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+-+.++..++.|+||.||||+|..+.|..-|.
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 34456778999999999999999999998883
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.019 Score=54.07 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.9
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999998753
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.018 Score=53.61 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=19.8
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 599999999999999999986
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.015 Score=59.64 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++++|++|+|||||++.|.|-.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.014 Score=54.91 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.3
Q ss_pred cCcEEEEEeecCCChhhHHHHHH
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLL 499 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~ 499 (695)
+.=+++++|++|+|||||++-+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 34579999999999999998886
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.064 Score=55.28 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.1
Q ss_pred EEEEeecCCChhhHHHHHHhhhc
Q 005467 481 VAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 481 vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+.|.||+|+||||+++.+.+...
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 99999999999999999988763
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.019 Score=53.92 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.0
Q ss_pred cEEEEEeecCCChhhHHHHHHh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~r 500 (695)
-+++++|++|+|||||++-+.+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 3699999999999999999985
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.019 Score=54.51 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++-|.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=94.37 E-value=0.013 Score=64.21 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=31.9
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di 516 (695)
.+++++|++|+||||++.-|++.+.....+|.+-..|.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 58999999999999999999999976666777655554
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.051 Score=59.41 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=24.1
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++-.-+.+.||+|+|||++++.+++-.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4555569999999999999999999865
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.074 Score=62.51 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=21.7
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+.++||+|+|||++++.+....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.037 Score=54.68 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=25.7
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
+|..+.+-|++||||||.++.|...+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999999988864
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.34 E-value=0.022 Score=53.46 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.2
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
..+..+.|+||+|+||||+++.+.+.+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999988764
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.33 E-value=0.021 Score=54.54 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|+|++|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999763
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.33 E-value=0.021 Score=54.42 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 799999999999999999987
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.032 Score=53.30 Aligned_cols=34 Identities=26% Similarity=0.237 Sum_probs=27.2
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
..++..-+.+ .|.-++|.|+||+||||++..|..
T Consensus 5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3566655554 488999999999999999987765
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.02 Score=57.84 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.7
Q ss_pred cEEEEEeecCCChhhHHHHHHhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rl 501 (695)
-+++|+|++|+|||||++.|.+-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999863
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.062 Score=58.90 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=24.7
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++|-.-+.+.||+|+|||++++.+++-.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 5566679999999999999999999875
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.27 E-value=0.024 Score=56.69 Aligned_cols=27 Identities=41% Similarity=0.561 Sum_probs=24.3
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+|..++|.|+.||||||+++.|..-+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998874
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.021 Score=54.28 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|+|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999998764
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.24 E-value=0.02 Score=54.81 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|+|++|+|||||++-+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999753
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.24 E-value=0.027 Score=54.73 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.4
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999874
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.021 Score=54.89 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.7
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999998743
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.021 Score=53.68 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999884
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.022 Score=54.75 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.2
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+.=+++|+|++|+|||||++.+.+-.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34479999999999999999998743
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.021 Score=55.58 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.3
Q ss_pred cEEEEEeecCCChhhHHHHHHhhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly 502 (695)
-+++++|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998754
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.022 Score=56.84 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.9
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
++|..+++.|++||||||+++.|...+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46899999999999999999999987754
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.052 Score=58.80 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=24.0
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
++|-.-+.+.||+|+|||++++.+++-..
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 44445599999999999999999998653
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.024 Score=54.04 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|+|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999988644
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.022 Score=54.06 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|+|++|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=94.12 E-value=0.031 Score=57.61 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.9
Q ss_pred cEEEEEeecCCChhhHHHHHHhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rl 501 (695)
..+.|+|++||||||+.+.|..-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999874
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.023 Score=53.94 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=19.5
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999876
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.025 Score=53.10 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.4
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999883
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.016 Score=54.44 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=24.7
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
+.+..+.|+||+|+||||+++.+......
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567899999999999999999988754
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.023 Score=54.54 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.7
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|||++|+|||||++.+.+..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 69999999999999999988743
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=94.06 E-value=0.094 Score=53.91 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=21.2
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+.|.||+|+||||+++.+.+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 49999999999999999999876
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.025 Score=53.32 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=94.06 E-value=0.024 Score=53.19 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=19.3
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999988874
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=94.04 E-value=0.025 Score=59.55 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.7
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
..+.|+|||||||||+.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998774
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=94.02 E-value=0.022 Score=59.41 Aligned_cols=22 Identities=55% Similarity=0.690 Sum_probs=20.6
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|||++|+|||||++.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999974
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.026 Score=54.32 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++-+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999863
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.96 E-value=0.024 Score=54.42 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998764
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=93.93 E-value=0.018 Score=58.46 Aligned_cols=29 Identities=41% Similarity=0.497 Sum_probs=24.9
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.+++..++|.|+.||||||+++.|...+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35788999999999999999999998773
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.013 Score=57.24 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.3
Q ss_pred CcEEEEEeecCCChhhHHHHHHhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
.-+++|+|++|+|||||++.|.+-
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 347999999999999999999875
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.026 Score=53.77 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|+|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999998863
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=93.88 E-value=0.029 Score=58.63 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=23.0
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
...+.|+||||||||||..-|+.-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45799999999999999999998764
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.88 E-value=0.027 Score=53.31 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.6
Q ss_pred CcEEEEEeecCCChhhHHHHHHh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
.=+++++|++|+|||||++-+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44799999999999999999884
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.023 Score=53.60 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.5
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
++.=+++++|++|+|||||++-+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3455799999999999999999886
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.027 Score=57.75 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++++|.+|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=93.84 E-value=0.03 Score=52.36 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=20.3
Q ss_pred CcEEEEEeecCCChhhHHHHHHh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
.=+++++|++|+|||||++.+.+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999998875
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=93.82 E-value=0.024 Score=52.99 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.0
Q ss_pred cEEEEEeecCCChhhHHHHHHh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~r 500 (695)
=+++++|++|+|||||++-+.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999998876
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.027 Score=54.30 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=19.4
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|++|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 699999999999999999874
|
| >3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.015 Score=62.59 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=41.9
Q ss_pred ceEEEEEEeeecCCCCccceee-----------eeeeEeecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 448 GHVQFVNISFHYPSRPTVPILN-----------HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~-----------~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+...|++++--||.. ..-++ |.=+.|-+|++.+|+|++|+|||||++.|.+...
T Consensus 136 ~r~~fe~l~Pi~P~~--R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 136 DRVNFDNLTPDYPRE--RFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp CCCCGGGSCEECCCS--BCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred cccccccCCCCCchh--hccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 455677776666643 23455 6678899999999999999999999999988753
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.028 Score=53.55 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=20.3
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999874
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.78 E-value=0.029 Score=53.65 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.6
Q ss_pred cEEEEEeecCCChhhHHHHHHhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rl 501 (695)
=+++++|++|+|||||++-+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998863
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.029 Score=53.36 Aligned_cols=22 Identities=45% Similarity=0.680 Sum_probs=20.1
Q ss_pred cEEEEEeecCCChhhHHHHHHh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~r 500 (695)
=+++|+|++|+|||||++.+.+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999986
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.78 E-value=0.024 Score=55.91 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=20.2
Q ss_pred cEEEEEeecCCChhhHHHHHHh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~r 500 (695)
-+++++|++|+|||||++.+.+
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999876
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.78 E-value=0.029 Score=53.15 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.6
Q ss_pred cEEEEEeecCCChhhHHHHHHhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rl 501 (695)
=+++++|++|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999764
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.77 E-value=0.029 Score=54.16 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.9
Q ss_pred CcEEEEEeecCCChhhHHHHHHhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
.=+++|+|++|+|||||++.+.+-
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999998853
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.033 Score=60.25 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=22.9
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
...++|+||||||||||..-|+.-+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 35789999999999999999988774
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.027 Score=58.85 Aligned_cols=23 Identities=52% Similarity=0.586 Sum_probs=21.0
Q ss_pred cEEEEEeecCCChhhHHHHHHhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rl 501 (695)
-+|||+|++|+|||||++.|.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36999999999999999999874
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.023 Score=54.01 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.2
Q ss_pred cEEEEEeecCCChhhHHHHHHhhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly 502 (695)
=+++++|++|+|||||++-+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999988654
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.026 Score=54.15 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++++|++|+|||||++.+.+-+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 69999999999999999877643
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.03 Score=53.79 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.1
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
++.=+++|+|++|+|||||++-+.+-
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34457999999999999999998753
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=93.68 E-value=0.032 Score=53.67 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++.+.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999986
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.03 Score=57.04 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.3
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.|.+-
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.024 Score=54.22 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|++|+|||||++.+.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 599999999999999999875
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.031 Score=56.73 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=19.9
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++.|.+
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999997
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.031 Score=54.52 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.7
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999985
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.033 Score=53.01 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 699999999999999988775
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.064 Score=52.45 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=21.6
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
-+++|+|.+|+|||||++-+++-..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3799999999999999998887653
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=93.55 E-value=0.033 Score=54.00 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.5
Q ss_pred cEEEEEeecCCChhhHHHHHHhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rl 501 (695)
-+++++|++|+|||||++-+.+-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998864
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.032 Score=57.80 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.4
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.++|||++|+|||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=93.53 E-value=0.031 Score=56.79 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.1
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++++|++|+|||||++.|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.033 Score=56.85 Aligned_cols=30 Identities=40% Similarity=0.464 Sum_probs=23.0
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCce
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~ 508 (695)
.++++||.+|+|||||++.|.|-.....|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 689999999999999999999866544443
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.027 Score=53.65 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=20.7
Q ss_pred CcEEEEEeecCCChhhHHHHHHh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
.-+++|+|++|+|||||++-+.+
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 44799999999999999999886
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.48 E-value=0.038 Score=52.59 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999864
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.034 Score=57.03 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|||.+|+|||||++.|.|--
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.023 Score=53.42 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=9.5
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988753
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.084 Score=51.72 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=26.6
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i 511 (695)
|+.|+|=|+-||||||.+++|...+. ....+..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~ 34 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIM 34 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEE
Confidence 67899999999999999999998875 2334443
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.033 Score=54.10 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=19.4
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|++|+|||||++.+.+
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999998875
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.034 Score=53.22 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=20.4
Q ss_pred cCcEEEEEeecCCChhhHHHHHHh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
+.=+++++|++|+|||||++.+.+
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 344799999999999999998875
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.034 Score=53.26 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.6
Q ss_pred cCcEEEEEeecCCChhhHHHHHHh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
+.=+++++|++|+|||||++-+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 445799999999999999998853
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.032 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=19.9
Q ss_pred cCcEEEEEeecCCChhhHHHHHH
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLL 499 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~ 499 (695)
+.=+++++|++|+|||||++-+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34479999999999999999884
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.045 Score=52.92 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.1
Q ss_pred cCcEEEEEeecCCChhhHHHHHHh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
+.=+++++|++|+|||||++.+.+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 344799999999999999988774
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.046 Score=52.67 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.3
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|++|+|||||++-+.+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 599999999999999998865
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=93.10 E-value=0.44 Score=47.51 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=36.7
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeee-----------cccccccCeEEEee
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR-----------LSTIKAVDRIVVID 663 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHr-----------lsti~~aD~IvvL~ 663 (695)
.+.+++++||+-=..| ...+.+.+.+ .|..||+-.++ ...+..||.|.-|.
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~------~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN------AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH------TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh------CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 5789999999998854 3333344433 35789998898 34577899998774
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.038 Score=63.22 Aligned_cols=37 Identities=32% Similarity=0.340 Sum_probs=28.4
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCc--eEEEcCc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG--QIYIDGF 514 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G--~I~idG~ 514 (695)
+|..+.|+|.+||||||+.+.|...+.- .| -+.+||.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~-~G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEechH
Confidence 4678999999999999999999987631 23 4555543
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=93.00 E-value=0.047 Score=53.63 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.8
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
++.|.||.||||+|..+.|+.-|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999999883
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.022 Score=55.37 Aligned_cols=21 Identities=33% Similarity=0.722 Sum_probs=19.5
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|++|+|||||++.+.+
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999884
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.95 E-value=0.042 Score=54.03 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.0
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|||++|+|||||++-+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999998753
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=92.91 E-value=0.099 Score=54.78 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=34.4
Q ss_pred eecCcEEEEEeecCCChhhH-HHHHHhhhcC--CCceEEEcCccCCcchhHHHHhhhccc
Q 005467 475 IEANEVVAIVGLSGSGKSTF-VNLLLRLYEP--SDGQIYIDGFPLTDLDIRWLREKIGFV 531 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL-l~LL~rly~p--~~G~I~idG~di~~i~~~~lR~~I~~V 531 (695)
+++| .+-|.||+||||||| ++++...... ..--++||+..- +++. .-+++|+-
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s--~~~~-ra~~lGvd 81 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG--ITPA-YLRSMGVD 81 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC--CCHH-HHHHTTCC
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch--hhHH-HHHHhCCC
Confidence 7889 999999999999999 4555554442 233467777532 2222 34567763
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.049 Score=60.25 Aligned_cols=49 Identities=29% Similarity=0.364 Sum_probs=32.7
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc----CCC--------ceEEEcCccCCcchhHHH
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE----PSD--------GQIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~----p~~--------G~I~idG~di~~i~~~~l 524 (695)
+.|=+++|||++|+|||||++.|.+--. +.. ..+.++|.++.=+|..-+
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~ 282 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGI 282 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC----
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCcc
Confidence 3455699999999999999999998632 112 246777776655554433
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=92.76 E-value=0.025 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=5.0
Q ss_pred cEEEEEeecCCChhhHHHHHHhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rl 501 (695)
=+++++|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999988754
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.056 Score=60.46 Aligned_cols=38 Identities=8% Similarity=0.065 Sum_probs=30.0
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC-CCc--eEEEcC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP-SDG--QIYIDG 513 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p-~~G--~I~idG 513 (695)
+.|-++.++|.|||||||+.+.|+.-+.- ..| --++||
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDg 433 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEH 433 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCC
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecC
Confidence 56778999999999999999999998864 322 235666
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.039 Score=57.52 Aligned_cols=26 Identities=27% Similarity=0.462 Sum_probs=22.4
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++-+++++|++|+|||||++.+.+-
T Consensus 1 ~~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 1 PLGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35668999999999999999997764
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=0.075 Score=51.06 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=25.0
Q ss_pred cCcEEEEEeecCCChhhHH-HHHHhhhcCCCceEEE
Q 005467 477 ANEVVAIVGLSGSGKSTFV-NLLLRLYEPSDGQIYI 511 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl-~LL~rly~p~~G~I~i 511 (695)
+|..+.|+||.||||||++ +++.++.. ...++.+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~-~g~~v~~ 36 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL-GKKKVAV 36 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH-TTCEEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEE
Confidence 5889999999999999997 66665543 2334443
|
| >2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.71 E-value=0.051 Score=61.44 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.6
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+.|..+.+.|++||||||+.+.|...+.
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 4477899999999999999999998664
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.05 Score=61.87 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=29.0
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCc---eEEEcC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG---QIYIDG 513 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G---~I~idG 513 (695)
++|.++.|.|.|||||||+.+.|...+.- .| -+.+||
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~-~G~~~~~~lD~ 433 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQ-QGGRSVSLLLG 433 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHH-HCSSCEEEEEH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcc-cCCceEEEECc
Confidence 45678999999999999999999987642 23 355654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 695 | ||||
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-94 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-93 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-88 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 7e-84 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-81 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-73 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-54 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 7e-50 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-46 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 5e-46 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 9e-45 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 7e-44 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-42 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-42 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-41 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-40 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 8e-39 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-37 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-34 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-34 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-27 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 3e-11 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-11 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-11 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-09 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 6e-06 | |
| d1yj5a2 | 172 | c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p | 4e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.001 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.002 |
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 290 bits (745), Expect = 1e-94
Identities = 116/256 (45%), Positives = 164/256 (64%), Gaps = 8/256 (3%)
Query: 439 EGVK-LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNL 497
EG + + R G ++F N++F YP R VP L ++ L I A + VA+VG SGSGKST +L
Sbjct: 2 EGKRVIDRATGDLEFRNVTFTYPGRE-VPALRNINLKIPAGKTVALVGRSGSGKSTIASL 60
Query: 498 LLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNE 557
+ R Y+ +G I +DG L + + LR ++ V Q L + +NI Y ++ E
Sbjct: 61 ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120
Query: 558 DIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEAT 615
IE AA+ AY +FI + G +T++ ++ LLSGGQ+QRIAIARA+LRD IL+LDEAT
Sbjct: 121 QIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 180
Query: 616 SALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAE 675
SALD+ESE ++ L L+ + RT +VIAHRLSTI+ D IVV++DG I+E G H+E
Sbjct: 181 SALDTESERAIQAALDELQKN----RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSE 236
Query: 676 LLHKGRLYAKLVKRQT 691
LL + +YA+L K Q
Sbjct: 237 LLAQHGVYAQLHKMQF 252
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 287 bits (737), Expect = 2e-93
Identities = 113/250 (45%), Positives = 152/250 (60%), Gaps = 8/250 (3%)
Query: 443 LQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502
++ G + ++SF Y PIL + L+IE E VA VG+SG GKST +NL+ R Y
Sbjct: 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 503 EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA 562
+ + GQI IDG + D LR +IG V Q+ L +K NI+ G P +E++ A
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP-TATDEEVVEA 127
Query: 563 AKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
AK A H+FI++LP GY+T V + LSGGQKQR++IAR L +P IL+LDEATSALD
Sbjct: 128 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 187
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKG 680
ESE ++ L L D RT +++AHRLSTI D+IVVI++G I+E G H EL+ K
Sbjct: 188 ESESIIQEALDVLSKD----RTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ 243
Query: 681 RLYAKLVKRQ 690
Y L Q
Sbjct: 244 GAYEHLYSIQ 253
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 275 bits (705), Expect = 1e-88
Identities = 102/250 (40%), Positives = 154/250 (61%), Gaps = 4/250 (1%)
Query: 441 VKLQRLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500
+ L G VQF ++SF YP+RP V +L + T+ EV A+VG +GSGKST LL
Sbjct: 3 LTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 62
Query: 501 LYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIE 560
LY+P+ GQ+ +DG PL + R+L ++ VGQEPQ+ ++ NI YG + E+I
Sbjct: 63 LYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEIT 122
Query: 561 WAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSAL 618
AA ++ H FI LP GY+T VD+ LSGGQ+Q +A+ARA++R P +L+LD+ATSAL
Sbjct: 123 AAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSAL 182
Query: 619 DSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH 678
D+ S+ V+ +L+ + R+V++I LS ++ D I+ ++ G I E G H +L+
Sbjct: 183 DANSQLQVEQLLYESPE--RYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME 240
Query: 679 KGRLYAKLVK 688
K Y +V+
Sbjct: 241 KKGCYWAMVQ 250
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 262 bits (672), Expect = 7e-84
Identities = 98/243 (40%), Positives = 140/243 (57%), Gaps = 8/243 (3%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
+ ++ F Y IL + + N ++A G SG GKST +LL R Y+P+ G+I
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 569
IDG P+ ++ + R +IGFV Q+ ++ I+ N+ YG D +ED+ A+
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 570 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
F+ ++P T V + +SGGQ+QR+AIARA LR+P IL+LDEAT++LDSESE V+
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 628 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 687
L +L RT +VIAHRLSTI D+I I+ G+I G H EL+ LYAK V
Sbjct: 180 KALDSLMKG----RTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235
Query: 688 KRQ 690
Q
Sbjct: 236 SEQ 238
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 254 bits (651), Expect = 7e-81
Identities = 113/246 (45%), Positives = 152/246 (61%), Gaps = 9/246 (3%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
+ F NI F Y + IL+++ L+I+ EV+ IVG SGSGKST L+ R Y P +GQ+
Sbjct: 2 ITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVH 569
IDG L D WLR ++G V Q+ LL I NI + E + +AAK A H
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA-NPGMSVEKVIYAAKLAGAH 119
Query: 570 EFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVK 627
+FI L GY T+V + LSGGQ+QRIAIARA++ +P IL+ DEATSALD ESEH +
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 628 GVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELL-HKGRLYAKL 686
+H + RTVI+IAHRLST+K DRI+V++ G+I+E G H ELL LY+ L
Sbjct: 180 RNMHKICKG----RTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Query: 687 VKRQTE 692
+ Q++
Sbjct: 236 YQLQSD 241
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 237 bits (606), Expect = 1e-73
Identities = 66/288 (22%), Positives = 128/288 (44%), Gaps = 34/288 (11%)
Query: 407 MVDNLSSLLQSIGATEKVFQLIDLLPSNQFLSEGVKLQRLMGHVQFVNISFHYPSRPTVP 466
+++N+++ + E +L++ + + + K +V F ++ P
Sbjct: 4 IMENVTAFWE-----EGFGELLEKVQQS---NGDRKHSSDENNVSFSHLCLVGN-----P 50
Query: 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE 526
+L ++ L IE E++AI G +GSGK++ + L+L E S+G I G
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 97
Query: 527 KIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD 586
++ F Q ++ IK NI++G D + K + + I T++ +
Sbjct: 98 RVSFCSQFSWIMPGTIKENIIFGVSYD--EYRYKSVVKACQLQQDITKFAEQDNTVLGEG 155
Query: 587 L--LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644
LSGGQ+ RI++ARA+ +D + LLD LD +E V + +T I
Sbjct: 156 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQ---VFESCVCKLMANKTRI 212
Query: 645 VIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLH-KGRLYAKLVKRQT 691
++ ++ ++ D+I+++ G G +EL + +KL+ T
Sbjct: 213 LVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDT 260
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 183 bits (467), Expect = 2e-54
Identities = 72/229 (31%), Positives = 120/229 (52%), Gaps = 10/229 (4%)
Query: 450 VQFVNISFHYPSR-PTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
++ N++ Y + L +V L I+ E V+I+G SGSGKST +N++ L +P++G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 509 IYIDGFPLTDLD----IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGC-PKDVKNEDIEWA 562
+YID DLD + R+KIGFV Q+ L+ + N+ K E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 563 AKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSES 622
K+A + L + + LSGGQ+QR+AIARA+ +P I+L D+ T ALDS++
Sbjct: 122 RKRALECLKMAELEERFANHKPNQ-LSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 623 EHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVG 671
+ +L L + +TV+V+ H ++ + +RI+ + DG +
Sbjct: 181 GEKIMQLLKKLNE--EDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 172 bits (437), Expect = 7e-50
Identities = 69/240 (28%), Positives = 123/240 (51%), Gaps = 23/240 (9%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M V+ N++ + + +N + LTI+ E + ++G SG GK+T + ++ L EP++
Sbjct: 4 MVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE 60
Query: 507 GQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIE 560
G+IY +T L + I V Q + M + NI + PKD ++ +
Sbjct: 61 GRIYFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR 118
Query: 561 WAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
WAA+ + E + P LSGGQ+QR+A+ARAI+ +P +LL+DE S LD+
Sbjct: 119 WAAELLQIEELLNRYPAQ---------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 169
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 679
+ ++ + L+ K K T I + H + DRI V++ G+++++G+ E+ +
Sbjct: 170 KLRVAMRAEIKKLQ--QKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 162 bits (411), Expect = 2e-46
Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 22/241 (9%)
Query: 450 VQFVNISFHYPSRP-TVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508
++ NI+ + T+ LN+V L + A ++ ++G SG+GKST + + L P++G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 509 IYIDGFPLTDL---DIRWLREKIGFVGQEPQLL-QMDIKSNIM-----YGCPKDVKNEDI 559
+ +DG LT L ++ R +IG + Q LL + N+ PKD +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 560 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALD 619
+ + S P LSGGQKQR+AIARA+ +P +LL DEATSALD
Sbjct: 122 TELLSLVGLGDKHDSYP---------SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
Query: 620 SESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 678
+ + +L + T+++I H + +K + D + VI +G +IE +E+
Sbjct: 173 PATTRSILELLKDINRRLGL--TILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 679 K 679
Sbjct: 231 H 231
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 162 bits (411), Expect = 5e-46
Identities = 68/251 (27%), Positives = 115/251 (45%), Gaps = 35/251 (13%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
+ +++ Y +L V L A +V++I+G SGSGKSTF+ + L +PS+G I
Sbjct: 3 LHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 510 YIDGFPLTDL-------------DIRWLREKIGFVGQEPQLL-QMDIKSNIMY------G 549
++G + + +R LR ++ V Q L M + N+M G
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 550 CPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAIL 609
K E + + E + LSGGQ+QR++IARA+ +P +L
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPVH--------LSGGQQQRVSIARALAMEPDVL 171
Query: 610 LLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRII 668
L DE TSALD E V VL ++ + +T++V+ H + + V ++ + G+I
Sbjct: 172 LFDEPTSALDPEL---VGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228
Query: 669 EVGNHAELLHK 679
E G+ ++
Sbjct: 229 EEGDPEQVFGN 239
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 157 bits (399), Expect = 9e-45
Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 22/228 (9%)
Query: 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLR 525
L + + A E++ +VG +G+GKST + + + G I G PL L
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLA 71
Query: 526 EKIGFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 584
++ Q+ + + + E + A + + +
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRST-------- 123
Query: 585 DDLLSGGQKQRIAIARAILR-------DPAILLLDEATSALDSESEHYVKGVLHALRNDC 637
+ LSGG+ QR+ +A +L+ +LLLDE ++LD + + +L AL C
Sbjct: 124 -NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL---C 179
Query: 638 KTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYA 684
+ +++ +H L+ R ++ G+++ G E+L L
Sbjct: 180 QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQ 227
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 155 bits (394), Expect = 7e-44
Identities = 63/240 (26%), Positives = 110/240 (45%), Gaps = 17/240 (7%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M V+ V++ + V + + L ++ E + ++G SG GK+T + ++ L EPS
Sbjct: 1 MAGVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR 57
Query: 507 GQIYIDGFPLTDLD----IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWA 562
GQIYI + D + + I V Q L + + P ++ +
Sbjct: 58 GQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA-FPLKLRKVPRQEI 116
Query: 563 AKQAYVHEFILSLPCGYETLVDDDL--LSGGQKQRIAIARAILRDPAILLLDEATSALDS 620
++ + L G L++ LSGGQ+QR+A+ RAI+R P + L+DE S LD+
Sbjct: 117 DQRV---REVAEL-LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA 172
Query: 621 ESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 679
+ ++ L L+ T I + H + DRI V++ G + +VG+ E+ K
Sbjct: 173 KLRVRMRAELKKLQRQLGV--TTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 152 bits (384), Expect = 1e-42
Identities = 66/237 (27%), Positives = 108/237 (45%), Gaps = 23/237 (9%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
VQ N++ + V + + L I E V VG SG GKST + ++ L + G +
Sbjct: 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMY-----GCPKDVKNEDIEWAA 563
+I + D +G V Q L + + N+ + G K+V N+ + A
Sbjct: 58 FIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 564 KQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESE 623
+ + + P LSGGQ+QR+AI R ++ +P++ LLDE S LD+
Sbjct: 116 EVLQLAHLLDRKP---------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 166
Query: 624 HYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 679
++ + L + RT+I + H + D+IVV+D GR+ +VG EL H
Sbjct: 167 VQMRIEISRLH--KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 152 bits (385), Expect = 2e-42
Identities = 56/247 (22%), Positives = 111/247 (44%), Gaps = 22/247 (8%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M ++ NI ++ L+ V +++ +V I+G +GSGKST +N++ + +
Sbjct: 2 MEILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE 58
Query: 507 GQIYIDGFPLTDLDIRWL-REKIGFVGQEP-QLLQMDIKSNIMYGCPKDVKN-------- 556
G++Y + +T+ + L I Q P L +M + N++ G ++
Sbjct: 59 GRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYK 118
Query: 557 ---EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDE 613
E ++A+ L L Y+ + LSGGQ + + I RA++ +P ++++DE
Sbjct: 119 KWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE--LSGGQMKLVEIGRALMTNPKMIVMDE 176
Query: 614 ATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGN 672
+ + H + + L+ T ++I HRL + D + V+ +G+II G
Sbjct: 177 PIAGVAPGLAHDIFNHVLELK---AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233
Query: 673 HAELLHK 679
E +
Sbjct: 234 GEEEIKN 240
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 148 bits (375), Expect = 2e-41
Identities = 59/254 (23%), Positives = 114/254 (44%), Gaps = 29/254 (11%)
Query: 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDG 507
G V ++ + IL + IE E+ ++G +G+GK+T + ++ L +PS G
Sbjct: 1 GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 508 QIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNI-----MYGCPKDVKNEDIEW 561
+ + G + +R+ I ++ +E + M + Y E +E
Sbjct: 58 IVTVFGKN-VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 562 AAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSE 621
A + A + E I S G +++ IARA++ +P + +LDE TS LD
Sbjct: 117 ATEIAGLGEKIKDRVST---------YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 167
Query: 622 SEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKG 680
+ V+ +L + T++V +H + ++ + DRI +I +G I+E G EL +
Sbjct: 168 NAREVRKILKQASQEG---LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224
Query: 681 R------LYAKLVK 688
+ ++ ++VK
Sbjct: 225 KAQNIEEVFEEVVK 238
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 145 bits (368), Expect = 3e-40
Identities = 47/230 (20%), Positives = 99/230 (43%), Gaps = 17/230 (7%)
Query: 454 NISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513
++ +Y + + + + L + ++V ++G +G+GK+T ++ + L G+I +G
Sbjct: 11 SLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67
Query: 514 FPLTDLD--IRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEF 571
+T+ + ++ + N+M G E I+ E+
Sbjct: 68 QDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL------EW 121
Query: 572 ILSLPCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGV 629
I SL + + LSGG++Q +AI RA++ P +L++DE + L V V
Sbjct: 122 IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEV 181
Query: 630 LHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLH 678
+ + + T++++ V V++ G+I+ G +ELL
Sbjct: 182 IQKIN---QEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 141 bits (357), Expect = 8e-39
Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 22/243 (9%)
Query: 447 MGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD 506
M + N+S + + V L++V + IE E I+G SG+GK+TF+ ++ L PS
Sbjct: 1 MVRIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 507 GQIYIDGFPLTDLDIRWLRE---KIGFVGQEPQLL-QMDIKSNIMYGC-----PKDVKNE 557
G++Y D + + KIG V Q L + NI + K+ +
Sbjct: 60 GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119
Query: 558 DIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSA 617
+E AK +H + P LSG Q+QR+A+ARA+++DP++LLLDE S
Sbjct: 120 RVEEVAKILDIHHVLNHFPRE---------LSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 618 LDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAEL 676
LD+ + ++ ++ + T++V++H + I A+ DR+ V+ G++++VG +L
Sbjct: 171 LDARMRDSARALVKEVQ--SRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Query: 677 LHK 679
Sbjct: 229 YDN 231
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 136 bits (344), Expect = 3e-37
Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 21/234 (8%)
Query: 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509
++ ++S + + L+++ L +E+ E I+G +G+GK+ F+ L+ + P G+I
Sbjct: 2 IEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 510 YIDGFPLTDLDIRWLREKIGFVGQEPQLL-QMDIKSNIMYGC--PKDVKNEDIEWAAKQA 566
+DG +TDL + I FV Q L M++K N+ +G K + + A+
Sbjct: 58 LLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 567 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
+ + P LSGG++QR+A+ARA++ +P ILLLDE SALD ++
Sbjct: 116 KIEHLLDRNPLT---------LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHK 679
+ +L L K TV+ I H + + + DRI V+ DG++I+VG E+ K
Sbjct: 167 REMLSVLHKKNKL--TVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 127 bits (321), Expect = 2e-34
Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 28/216 (12%)
Query: 451 QFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510
+ ++S Y P+L + +TIE VV G +G GK+T + + +P G+I
Sbjct: 4 EIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 511 IDGFPLTDLDIRWLREKIGFVGQEPQLLQ-MDIKSNIMYG---CPKDVKNEDIEWAAKQA 566
+G I ++ KI F+ +E + + + ++ + V +I A +
Sbjct: 60 YNGV-----PITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 114
Query: 567 YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYV 626
V + L LS G +R+ +A +L + I +LD+ A+D +S+H V
Sbjct: 115 EVLDLKKKLGE----------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 164
Query: 627 KGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662
+ + + +I LS D +
Sbjct: 165 LKSILEILKEKGI--VIISSREELSY---CDVNENL 195
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 128 bits (324), Expect = 2e-34
Identities = 59/221 (26%), Positives = 110/221 (49%), Gaps = 17/221 (7%)
Query: 470 HVCLTIEAN-EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528
+ + E + ++G +G+GKS F+ L+ + +P G++ ++G +T L R I
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGI 72
Query: 529 GFVGQEPQLL-QMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDD-- 585
GFV Q+ L + + NI YG +V+ + + ++ ++ G L+D
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLR-NVERVERDRRVRE-------MAEKLGIAHLLDRKP 124
Query: 586 DLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIV 645
LSGG++QR+A+ARA++ P +LLLDE SA+D +++ + L ++ + ++
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ--REFDVPILH 182
Query: 646 IAHRLSTIKAV-DRIVVIDDGRIIEVGNHAELLHKGRLYAK 685
+ H L + D + V+ +GRI+E G EL
Sbjct: 183 VTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVA 223
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 105 bits (263), Expect = 5e-27
Identities = 26/201 (12%), Positives = 46/201 (22%), Gaps = 34/201 (16%)
Query: 481 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQM 540
+ I G G GK+T V ++ + + + R I G++
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 541 DIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIAR 600
S + G Y V A
Sbjct: 63 FFTSKKLVGS----------------------------YGVNVQYFEELAIPILERAYRE 94
Query: 601 AILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIV 660
A ++++DE K + V+ V I
Sbjct: 95 AKKDRRKVIIIDEIGKMEL----FSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIR 150
Query: 661 VIDDGRIIEVG--NHAELLHK 679
+ +IE+ N +L
Sbjct: 151 RLPGAVLIELTPENRDVILED 171
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 63.0 bits (151), Expect = 3e-11
Identities = 55/318 (17%), Positives = 120/318 (37%), Gaps = 8/318 (2%)
Query: 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMVFHKSSRF--- 176
+ R + K+ + + I+ + +P ++ A+ A+ +
Sbjct: 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61
Query: 177 -----LVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLT 231
L + + +R + ++ +R+ LY+ L F+ VG +
Sbjct: 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVI 121
Query: 232 SRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVY 291
SR+ D ++ + I + I + + A + L LTL+AL I F + V V+
Sbjct: 122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 292 GQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES 351
++ + + A E + + V+ + E+ E + ++ +
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 352 MAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNL 411
+ T+ ++ + +G + G ++ L +V Y E L R+V +
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASF 301
Query: 412 SSLLQSIGATEKVFQLID 429
++L QS + ++VFQLID
Sbjct: 302 TTLTQSFASMDRVFQLID 319
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 58.0 bits (138), Expect = 1e-09
Identities = 60/317 (18%), Positives = 129/317 (40%), Gaps = 1/317 (0%)
Query: 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAM-VFHKSSR 175
W R+W I K ++VA +LI+ A S+ M +L + + V
Sbjct: 1 WQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPL 60
Query: 176 FLVLLCVTSGIFSGLRSGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLT 235
++ L + GI S + S C S + +V +R L+ ++ V FFD ++ G L SR+T
Sbjct: 61 VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRIT 120
Query: 236 ADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTLSALLICSFLSIIVSVYGQYQ 295
D +++++ + ++R G FI + SW L++ +++ +SI + V +
Sbjct: 121 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF 180
Query: 296 KRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355
+ S Q A++ L + V ++G +E E R+ K+ ++ A
Sbjct: 181 RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240
Query: 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLL 415
+ + + + ++ ++ +T L+ + + +
Sbjct: 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 300
Query: 416 QSIGATEKVFQLIDLLP 432
+ + A + +F ++D
Sbjct: 301 RGMAACQTLFAILDSEQ 317
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 6e-06
Identities = 25/177 (14%), Positives = 45/177 (25%), Gaps = 13/177 (7%)
Query: 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQ 539
V + G G GK+T ++ + + S + R + + + L
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
Query: 540 MDIKSNI-----MYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQ 592
V E A S G V D+ +
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVL-RNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 593 KQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHR 649
+ I R L P ++L ++ +RN K + +R
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPL-----ALVEEIRNRKDVKVFNVTKENR 173
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.5 bits (91), Expect = 4e-04
Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Query: 479 EVVAIVGLSGSGKSTFVNLLLRL--YEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQ 536
EVV VG G+GKSTF+ L Y + LR+ V
Sbjct: 15 EVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTN 74
Query: 537 LLQMDIK 543
Sbjct: 75 PDVPSRA 81
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 38.0 bits (87), Expect = 0.001
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW 523
++A SG+GK+T + L+ + + D+D+
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDK 47
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (89), Expect = 0.002
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 589 SGGQKQRIAI----ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVI 644
SGG+K A+ A + +LDE +ALD V+ + +R I
Sbjct: 334 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALD---ITNVQRIAAYIRRHRNPDLQFI 390
Query: 645 VIAHRLSTIKAVDRIVVI 662
VI+ + + + D +V +
Sbjct: 391 VISLKNTMFEKSDALVGV 408
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 695 | |||
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.97 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.97 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.82 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.81 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.55 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.24 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.13 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.79 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 98.27 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.74 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.71 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.46 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.44 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.38 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.37 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.36 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.3 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.29 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.2 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.17 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.14 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.13 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.06 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.05 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.03 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.94 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.92 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.92 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.92 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.9 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.87 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.86 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.84 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.83 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.75 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.74 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.72 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.68 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.64 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.63 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.57 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.54 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.54 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.53 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.42 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.42 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.39 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.36 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.34 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.31 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.3 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.28 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.26 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.24 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.23 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.16 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.14 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.13 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.04 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.0 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.97 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.95 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.9 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.88 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.87 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.86 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.86 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.86 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.85 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.79 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.79 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.79 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.78 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.78 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.75 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.74 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.73 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.73 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.71 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.7 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.66 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.64 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.62 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.59 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.57 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.5 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.49 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.49 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.47 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 95.45 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.39 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.38 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.38 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.33 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.32 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 95.32 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.29 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.29 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.25 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.17 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.14 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.11 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.05 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.04 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.98 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 94.97 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.94 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.82 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.81 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.8 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.78 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.78 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.78 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.74 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 94.72 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 94.64 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.6 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.6 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.56 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.53 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.5 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.49 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.48 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.37 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.35 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.33 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.31 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 94.3 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.24 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.24 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.19 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.15 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.14 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.13 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.09 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.08 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 94.03 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.98 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.89 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.89 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.85 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.81 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.8 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.8 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.78 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 93.76 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.76 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 93.76 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.74 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.73 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.7 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.66 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 93.66 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 93.65 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.61 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.53 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.53 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.53 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.41 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.36 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.34 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 93.17 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.09 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 93.08 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 93.05 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 93.05 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 93.01 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.99 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.98 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.96 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.95 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.76 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.62 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.6 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.56 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.54 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.54 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.49 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.35 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.35 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.28 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 92.28 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.02 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.92 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.9 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.8 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 91.78 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 91.77 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.75 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.74 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.54 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 91.46 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.38 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.37 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 91.18 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.1 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.08 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.75 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.71 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.49 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.25 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 90.09 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 89.89 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 89.83 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 89.58 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 89.56 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 89.53 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 89.21 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 89.18 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.73 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.61 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.44 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 87.67 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 87.64 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 87.51 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 87.24 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 86.74 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 85.89 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 85.32 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 85.32 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 85.05 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 85.05 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 84.99 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 84.8 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 84.46 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 81.78 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 81.65 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 81.12 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 80.1 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 80.04 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.5e-75 Score=599.86 Aligned_cols=241 Identities=46% Similarity=0.730 Sum_probs=231.3
Q ss_pred cccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH
Q 005467 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l 524 (695)
..+|+|+|+||+|+|+++ ++++|+||||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++
T Consensus 12 ~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~l 90 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSL 90 (255)
T ss_dssp CCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CCCCEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHh
Confidence 346789999999999865 3589999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHh
Q 005467 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAI 602 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAl 602 (695)
|++|+||+|+++||++||+|||++| .++++++++++|++.+++++++.+||+||||.+|++ +|||||||||||||||
T Consensus 91 r~~i~~v~Q~~~lf~~Ti~eNi~~g-~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal 169 (255)
T d2hyda1 91 RNQIGLVQQDNILFSDTVKENILLG-RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 169 (255)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHGGG-CSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred hheeeeeeccccCCCCCHHHHHhcc-CcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999 468899999999999999999999999999999985 8999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCch
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRL 682 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~ 682 (695)
+++|+|||||||||+||+++|+.|++.|.++. +++|+|+||||+++++.||||+||++|+|++.|+|+||+++++.
T Consensus 170 ~~~p~ililDEpts~LD~~t~~~i~~~l~~l~----~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~ 245 (255)
T d2hyda1 170 LNNPPILILDEATSALDLESESIIQEALDVLS----KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGA 245 (255)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT----TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSH
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHh----cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 99999999999999999999999999999884 46899999999999999999999999999999999999999999
Q ss_pred hHHHHhhhc
Q 005467 683 YAKLVKRQT 691 (695)
Q Consensus 683 Y~~l~~~q~ 691 (695)
|++||+.|.
T Consensus 246 y~~l~~~Q~ 254 (255)
T d2hyda1 246 YEHLYSIQN 254 (255)
T ss_dssp HHHHHTTTT
T ss_pred HHHHHHHcC
Confidence 999999885
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-74 Score=589.29 Aligned_cols=238 Identities=47% Similarity=0.739 Sum_probs=227.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
+|+|+||||+|+++ ++++|+||||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CeEEEEEEEEeCCC-CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceE
Confidence 58999999999754 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCC
Q 005467 529 GFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 529 ~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p 606 (695)
|||+|+++||++||+|||+++ ++++++++++++++.+++++++..+|+|++|.+|++ +|||||||||||||||+++|
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p 158 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLA-NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 158 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTT-STTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEecccccCCcccccccccc-CccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhccc
Confidence 999999999999999999999 568999999999999999999999999999999985 99999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhc-CchhHH
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHK-GRLYAK 685 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~-~g~Y~~ 685 (695)
+|||||||||+||+.+|+.|++.|.++. +++|+|+||||+++++.||||+||++|+|+|.|+|+||+++ ++.|++
T Consensus 159 ~ililDEpts~LD~~~~~~i~~~l~~l~----~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~ 234 (241)
T d2pmka1 159 KILIFDEATSALDYESEHVIMRNMHKIC----KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 234 (241)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHH----TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHH
T ss_pred chhhhhCCccccCHHHHHHHHHHHHHHh----CCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHH
Confidence 9999999999999999999999999984 46899999999999999999999999999999999999987 679999
Q ss_pred HHhhhcc
Q 005467 686 LVKRQTE 692 (695)
Q Consensus 686 l~~~q~~ 692 (695)
||+.|.+
T Consensus 235 l~~~Q~d 241 (241)
T d2pmka1 235 LYQLQSD 241 (241)
T ss_dssp HHHHHCC
T ss_pred HHHHhcC
Confidence 9999864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.9e-74 Score=592.34 Aligned_cols=243 Identities=47% Similarity=0.751 Sum_probs=232.1
Q ss_pred cccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH
Q 005467 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l 524 (695)
...|+|+|+||||+|+++ +.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++
T Consensus 9 ~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~ 87 (253)
T d3b60a1 9 RATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 87 (253)
T ss_dssp CCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHH
T ss_pred CCceEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhh
Confidence 456789999999999865 3579999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHh
Q 005467 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAI 602 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAl 602 (695)
|++|+||+|++++|++|+++|+.++.+++.+++++++|++.++++++++.+|+||+|.+|++ +|||||||||||||||
T Consensus 88 r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal 167 (253)
T d3b60a1 88 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 167 (253)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred hheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999995456889999999999999999999999999999985 8999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCch
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRL 682 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~ 682 (695)
+++|+|||||||||+||+++++.|++.|.++. +++|+|+||||+++++.||+|+||++|+|+|.|+|+||++++|.
T Consensus 168 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~----~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~ 243 (253)
T d3b60a1 168 LRDSPILILDEATSALDTESERAIQAALDELQ----KNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGV 243 (253)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH----TTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSS
T ss_pred hcCCCEEEeccccccCCHHHHHHHHHHHHHhc----cCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 99999999999999999999999999999984 36899999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcc
Q 005467 683 YAKLVKRQTE 692 (695)
Q Consensus 683 Y~~l~~~q~~ 692 (695)
|++||+.|+.
T Consensus 244 y~~l~~~Q~g 253 (253)
T d3b60a1 244 YAQLHKMQFG 253 (253)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHccC
Confidence 9999999963
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-73 Score=583.39 Aligned_cols=242 Identities=42% Similarity=0.706 Sum_probs=229.9
Q ss_pred cccceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH
Q 005467 445 RLMGHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL 524 (695)
Q Consensus 445 ~~~~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l 524 (695)
..+|.|+|+||||+||++++.++|+||||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred cccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHH
Confidence 45678999999999997655679999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHh
Q 005467 525 REKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAI 602 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAl 602 (695)
|++|+||+|++++|++||+|||.+|.+++.+++++.++++.++++++++.||+|++|.+++. +|||||||||||||||
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecc
Confidence 99999999999999999999999996556788899999999999999999999999999984 8999999999999999
Q ss_pred hcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCch
Q 005467 603 LRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRL 682 (695)
Q Consensus 603 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~ 682 (695)
+++|+|||||||||+||+.++..|++.|.++.+ ..++|+|+||||+++++.||||+||++|+|+|+|+|+||++++|.
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~--~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~ 244 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPE--RYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGC 244 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGG--GGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSH
T ss_pred ccCCcEEEecCcCcccChhhHHHHHHHHHHHhh--hcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 999999999999999999999999999988754 247999999999999999999999999999999999999999999
Q ss_pred hHHHHh
Q 005467 683 YAKLVK 688 (695)
Q Consensus 683 Y~~l~~ 688 (695)
|++||+
T Consensus 245 y~~l~~ 250 (251)
T d1jj7a_ 245 YWAMVQ 250 (251)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.8e-73 Score=579.05 Aligned_cols=237 Identities=41% Similarity=0.669 Sum_probs=227.3
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||||+|++. +++|+||||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++||
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 7999999999753 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcCCc
Q 005467 530 FVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRDPA 607 (695)
Q Consensus 530 ~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~p~ 607 (695)
||+||++||++||+|||.++..++.++++++++++.+++.+++..+|+|++|.+|++ +|||||||||||||||+++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999985557889999999999999999999999999999984 899999999999999999999
Q ss_pred EEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHHHH
Q 005467 608 ILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAKLV 687 (695)
Q Consensus 608 ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~l~ 687 (695)
|||||||||+||+++|+.|++.|+++. +++|+|+||||+++++.||||+||++|+|+|+|+|+||+++++.|++||
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~----~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~ 235 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLM----KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHH----TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHH
T ss_pred EEEecCCccccCHHHHHHHHHHHHHHc----CCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCChHHHHHH
Confidence 999999999999999999999999984 3699999999999999999999999999999999999999999999999
Q ss_pred hhhcc
Q 005467 688 KRQTE 692 (695)
Q Consensus 688 ~~q~~ 692 (695)
+.|..
T Consensus 236 ~~Q~~ 240 (242)
T d1mv5a_ 236 SEQLT 240 (242)
T ss_dssp HCCCC
T ss_pred HHHhh
Confidence 99864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.4e-60 Score=492.52 Aligned_cols=218 Identities=27% Similarity=0.422 Sum_probs=196.7
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
+.|.|+|++|.+ +|||+||||+|+|||++|||||||||||||+++|+|+|+|++|+|.+|| +
T Consensus 37 ~~i~~~~~~~~g-----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 37 NNVSFSHLCLVG-----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ---CHHHHHHTT-----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CcEEEEEcCCCC-----CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------E
Confidence 456677666532 4799999999999999999999999999999999999999999999999 4
Q ss_pred hccccCCceeeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccccc--ccCCccchhHHHHHHhhcC
Q 005467 528 IGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDD--LLSGGQKQRIAIARAILRD 605 (695)
Q Consensus 528 I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~--~LSGGQkQRIaIARAll~~ 605 (695)
|+||+|++++|++||+|||.||. ..++++++++++.+++++++..+|+|++|.+|+. +|||||||||+|||||+++
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~ 176 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD 176 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTS--CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEeccccccCceeeccccccc--cccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhC
Confidence 89999999999999999999993 5678889999999999999999999999999985 8999999999999999999
Q ss_pred CcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccchhhhhcCchhHH
Q 005467 606 PAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNHAELLHKGRLYAK 685 (695)
Q Consensus 606 p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth~eLl~~~g~Y~~ 685 (695)
|+|||||||||+||+.+++.|.+.+.... .+++|+|+||||++.++.||||+||++|+|++.|+|+||++.++.|++
T Consensus 177 p~illLDEPts~LD~~~~~~i~~~~~~~~---~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~ 253 (281)
T d1r0wa_ 177 ADLYLLDSPFGYLDVFTEEQVFESCVCKL---MANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSS 253 (281)
T ss_dssp CSEEEEESCCCSSCHHHHHHHHHHCCCCC---TTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHH
T ss_pred ccchhhcCccccCCHHHHHHHHHHHHHHh---hCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhccCcHHHH
Confidence 99999999999999999998887543221 356899999999999999999999999999999999999998888877
Q ss_pred HHh
Q 005467 686 LVK 688 (695)
Q Consensus 686 l~~ 688 (695)
.+.
T Consensus 254 ~~~ 256 (281)
T d1r0wa_ 254 KLM 256 (281)
T ss_dssp HHH
T ss_pred HHc
Confidence 654
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-55 Score=444.59 Aligned_cols=218 Identities=30% Similarity=0.481 Sum_probs=163.4
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|++||+++.+.+.. |++||
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceee
Confidence 789999999964 4699999999999999999999999999999999999999999999999999887753 67899
Q ss_pred cccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL 603 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll 603 (695)
||+|++.||. .|++|||.++.. ...+ ++++.++++..++.++.+..| ..||||||||+||||||+
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~---------~~LSGGqkQRvaiAraL~ 146 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTLV 146 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC------------------------------CHHHHHH
T ss_pred eeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCCh---------hhCCHHHHHHHHHHHHHh
Confidence 9999999995 599999998832 1122 345677888888877776665 369999999999999999
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc-Cc
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK-GR 681 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~-~g 681 (695)
.+|++|+||||||+||+.+...|++.|.++.++ .|+|+|+|||++..+.. ||||++|++|+|++.|+++|++++ ..
T Consensus 147 ~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~--~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 224 (232)
T d2awna2 147 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR--LGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224 (232)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--SCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCC
Confidence 999999999999999999999999999987542 47999999999998876 999999999999999999999976 34
Q ss_pred hh
Q 005467 682 LY 683 (695)
Q Consensus 682 ~Y 683 (695)
.|
T Consensus 225 ~~ 226 (232)
T d2awna2 225 RF 226 (232)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.1e-55 Score=443.30 Aligned_cols=213 Identities=33% Similarity=0.561 Sum_probs=191.6
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
|+++|||++|++ .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+|+.+++.. |+.||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcce
Confidence 789999999963 489999999999999999999999999999999999999999999999999988765 78999
Q ss_pred cccCCceeee-eeccccccccCC--cCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCC
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCP--KDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDP 606 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~--~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p 606 (695)
||+|++.||. .||+|||.|+.. ....++++.++++..++.++.++.| ..||||||||+||||||+.+|
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~LSGG~~QRvaiAraL~~~P 146 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP---------LTLSGGEQQRVALARALVTNP 146 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG---------GGSCHHHHHHHHHHHHTTSCC
T ss_pred eeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCCh---------hhCCHHHhcchhhhhhhhccC
Confidence 9999999995 599999988731 1234567888888888877766554 369999999999999999999
Q ss_pred cEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 607 AILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 607 ~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
++|+||||||+||+.+.+.|.+.|.++.+. .|.|+|+|||++..+.. ||||++|++|+|++.|+++|++++
T Consensus 147 ~iLllDEPts~LD~~~~~~i~~~l~~l~~~--~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 147 KILLLDEPLSALDPRTQENAREMLSVLHKK--NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHH--TTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CceeecCCCcCCCHHHHHHHHHHHHHHHhc--CCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999997542 46899999999998876 999999999999999999999876
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.7e-55 Score=443.16 Aligned_cols=220 Identities=30% Similarity=0.515 Sum_probs=188.2
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
..|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|++||+|+.+++.. |++
T Consensus 5 ~~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ 79 (239)
T d1v43a3 5 VEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRN 79 (239)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGT
T ss_pred CeEEEEEEEEEECC---EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cce
Confidence 46999999999964 4799999999999999999999999999999999999999999999999999988764 678
Q ss_pred hccccCCceeee-eeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
||||+|++.||. .||+||+.++.. ...+. +++.++++..++.++....|. .||||||||+|||||
T Consensus 80 ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~LSGGq~QRvaiAra 150 (239)
T d1v43a3 80 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA---------QLSGGQRQRVAVARA 150 (239)
T ss_dssp EEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTT---------TCCSSCHHHHHHHHH
T ss_pred EEEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChh---------hCCHHHHHHHHHHhh
Confidence 999999999995 699999998742 13333 445567788888777666664 599999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc-
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK- 679 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~- 679 (695)
|+.+|+||+||||||+||+.+...|.+.|.++.++ .|+|+|+|||++..+.. ||||++|++|+|++.|+++|+.++
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~--~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK--LKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred hccCCCceeecCCcccCCHHHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999998542 37999999999999865 999999999999999999999987
Q ss_pred Cchh
Q 005467 680 GRLY 683 (695)
Q Consensus 680 ~g~Y 683 (695)
...|
T Consensus 229 ~~~~ 232 (239)
T d1v43a3 229 NSVF 232 (239)
T ss_dssp SBHH
T ss_pred CCHH
Confidence 3344
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.2e-55 Score=445.94 Aligned_cols=219 Identities=31% Similarity=0.476 Sum_probs=193.0
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch---hHHHH
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD---IRWLR 525 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~---~~~lR 525 (695)
.|+++||+++|++. +..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|++||+|+...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCC-CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 58999999999743 357999999999999999999999999999999999999999999999999997755 44557
Q ss_pred hhhccccCCceeee-eeccccccccCC-cCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
++||||+|++.||. -||+|||.++.. ...+. +++.++++.+++.++.+..|. .||||||||+|||
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~---------~LSGGqkQRvaiA 152 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR---------ELSGAQQQRVALA 152 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGG---------GSCHHHHHHHHHH
T ss_pred ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChh---------hCCHHHHhHHHHH
Confidence 88999999999996 599999998832 12332 457778888888777766663 6999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||..+|++|+||||||+||+.+...|++.|+++.+. .|.|+|+|||+++.+.. ||||++|++|+|++.|+++|+..
T Consensus 153 RaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~--~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR--LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHH--HCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred hHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhc--cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999998542 37899999999998854 99999999999999999999987
Q ss_pred c
Q 005467 679 K 679 (695)
Q Consensus 679 ~ 679 (695)
+
T Consensus 231 ~ 231 (242)
T d1oxxk2 231 N 231 (242)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.8e-55 Score=441.99 Aligned_cols=219 Identities=31% Similarity=0.470 Sum_probs=192.2
Q ss_pred EEEEEEeeecCCCCc-cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHH---HH
Q 005467 450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRW---LR 525 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~---lR 525 (695)
|+++||+++|+++.. .+||+||||+|++||++||+||||||||||+++|.|+.+|++|+|.+||+|+.+++.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 789999999976432 25899999999999999999999999999999999999999999999999998877654 56
Q ss_pred hhhccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHH
Q 005467 526 EKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIA 599 (695)
Q Consensus 526 ~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIA 599 (695)
++||||+|++.||. .||+|||.++.. ...+ ++++.++++.+++.++.+..|. .||||||||+|||
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~---------~LSGG~~QRvaiA 152 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS---------NLSGGQKQRVAIA 152 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBS---------CCCHHHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh---------hCCHHHHHHHHHh
Confidence 78999999999996 599999988621 1223 3456778888888776655553 6999999999999
Q ss_pred HHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhh
Q 005467 600 RAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLH 678 (695)
Q Consensus 600 RAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~ 678 (695)
|||..+|++||||||||+||+.+...|++.|.++.+. .|.|+|+|||++..+.. ||||++|++|+|+|.|+++|+++
T Consensus 153 raL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~--~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRR--LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHH--HCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred hhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhc--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999998542 47899999999999876 99999999999999999999987
Q ss_pred c
Q 005467 679 K 679 (695)
Q Consensus 679 ~ 679 (695)
+
T Consensus 231 ~ 231 (240)
T d3dhwc1 231 H 231 (240)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.5e-55 Score=444.12 Aligned_cols=217 Identities=30% Similarity=0.457 Sum_probs=192.9
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH----
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL---- 524 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l---- 524 (695)
.|+++||+++|++ .++|+||||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+...+
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEECC---EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 5899999999964 469999999999999999999999999999999999999999999999999988776543
Q ss_pred HhhhccccCCceeee-eeccccccccCC-cCCC----chhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHH
Q 005467 525 REKIGFVGQEPQLLQ-MDIKSNIMYGCP-KDVK----NEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAI 598 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~----~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaI 598 (695)
|++||||+|++.||. .||.||+.++.. ...+ ++++.++++.+++.++....| ..||||||||++|
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p---------~~LSGGqkQRv~I 150 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP---------RELSGGQRQRVAL 150 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG---------GGSCHHHHHHHHH
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCh---------hhCCHHHHHHHHH
Confidence 678999999999996 599999998731 1222 345777888888887766655 4699999999999
Q ss_pred HHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhh
Q 005467 599 ARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELL 677 (695)
Q Consensus 599 ARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl 677 (695)
||||+.+|++|||||||++||+.+...|++.|.++.++ .|.|+|+|||+++.+.. ||||++|++|+|++.|+++|++
T Consensus 151 AraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~--~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ--LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhc--cCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999988542 37899999999999866 9999999999999999999998
Q ss_pred hc
Q 005467 678 HK 679 (695)
Q Consensus 678 ~~ 679 (695)
.+
T Consensus 229 ~~ 230 (240)
T d1g2912 229 DK 230 (240)
T ss_dssp HS
T ss_pred hC
Confidence 76
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.9e-55 Score=439.61 Aligned_cols=213 Identities=35% Similarity=0.531 Sum_probs=178.2
Q ss_pred EEEEEEeeecCCCCc-cceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHH----
Q 005467 450 VQFVNISFHYPSRPT-VPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWL---- 524 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~l---- 524 (695)
|+++||+++|+.... ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|++||+++.+++.+.+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 789999999975422 247999999999999999999999999999999999999999999999999999987765
Q ss_pred HhhhccccCCceeee-eeccccccccCC----cCCCchh----HHHHHHHhhHhH-hHhcCCCCccccccccccCCccch
Q 005467 525 REKIGFVGQEPQLLQ-MDIKSNIMYGCP----KDVKNED----IEWAAKQAYVHE-FILSLPCGYETLVDDDLLSGGQKQ 594 (695)
Q Consensus 525 R~~I~~V~Qd~~LF~-~TI~eNI~~g~~----~~~~~ee----i~~A~~~a~l~~-fI~~LP~G~dT~vge~~LSGGQkQ 594 (695)
|++||||+|++.||. .||+||+.++.. +..+.++ +.+.++.+++.+ +.+..| .+|||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p---------~~LSGGqkQ 152 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP---------NQLSGGQQQ 152 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG---------GGSCHHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCCh---------hhCCHHHHH
Confidence 467999999999985 599999987621 1223222 223333333322 222222 369999999
Q ss_pred hHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeCCeEEEeccc
Q 005467 595 RIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGNH 673 (695)
Q Consensus 595 RIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gth 673 (695)
|+||||||..+|++|+||||||+||+.+.+.|++.|.++.+. .|.|+|+|||+++.++.||||++|++|+|+++|+.
T Consensus 153 RvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~--~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 153 RVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE--DGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHh--hCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999999999999999999998542 47899999999999888999999999999999974
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1e-52 Score=431.14 Aligned_cols=225 Identities=29% Similarity=0.458 Sum_probs=192.0
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcch--------
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLD-------- 520 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~-------- 520 (695)
.|+++||+++|++ .+||+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+++...+
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEECC---EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 4899999999964 46999999999999999999999999999999999999999999999999997553
Q ss_pred -----hHHHHhhhccccCCceeee-eeccccccccC--CcCCC----chhHHHHHHHhhHhHhHh-cCCCCccccccccc
Q 005467 521 -----IRWLREKIGFVGQEPQLLQ-MDIKSNIMYGC--PKDVK----NEDIEWAAKQAYVHEFIL-SLPCGYETLVDDDL 587 (695)
Q Consensus 521 -----~~~lR~~I~~V~Qd~~LF~-~TI~eNI~~g~--~~~~~----~eei~~A~~~a~l~~fI~-~LP~G~dT~vge~~ 587 (695)
...+|++||||+|++.+|. .||.||+.++. ....+ ++++.++++.+++.+... ..| ..
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p---------~~ 149 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP---------VH 149 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG---------GG
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCc---------cc
Confidence 3467899999999999996 69999998762 11222 344566677777765443 333 36
Q ss_pred cCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCe
Q 005467 588 LSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGR 666 (695)
Q Consensus 588 LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~ 666 (695)
||||||||++|||||..+|++||||||||+||+.+...|.+.|+++.+ +|+|+|+|||++..+.. ||||+||++|+
T Consensus 150 LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~---~g~til~vtHdl~~~~~~adri~vm~~G~ 226 (258)
T d1b0ua_ 150 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE---EGKTMVVVTHEMGFARHVSSHVIFLHQGK 226 (258)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH---TTCCEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred ccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc---cCCceEEEeCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999864 47999999999999875 99999999999
Q ss_pred EEEeccchhhhhc-Cchh-HHHHh
Q 005467 667 IIEVGNHAELLHK-GRLY-AKLVK 688 (695)
Q Consensus 667 Ive~Gth~eLl~~-~g~Y-~~l~~ 688 (695)
|+|.|+++|++++ ...| ++++.
T Consensus 227 iv~~g~~~ev~~~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 227 IEEEGDPEQVFGNPQSPRLQQFLK 250 (258)
T ss_dssp EEEEECHHHHHHSCCSHHHHHHHH
T ss_pred EEEEcCHHHHHhCCCCHHHHHHHh
Confidence 9999999999986 3344 44543
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=9.6e-52 Score=420.06 Aligned_cols=217 Identities=21% Similarity=0.375 Sum_probs=184.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHh-h
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLRE-K 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~-~ 527 (695)
-|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+|+.+.+.+..++ .
T Consensus 6 ~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEeeEEEEECC---EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 4799999999964 46999999999999999999999999999999999999999999999999999988776644 4
Q ss_pred hccccCCceeee-eeccccccccCCcCCCchhHHHHHHHh-----hHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPKDVKNEDIEWAAKQA-----YVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~~~~~eei~~A~~~a-----~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
|+|+||++.+|. -|++||+.++.......++..+.++.+ ++.++.+..| .+||||||||++||||
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~LSGG~~Qrv~iAra 153 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG---------GTLSGGEQQMLAIGRA 153 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBS---------SSSCHHHHHHHHHHHH
T ss_pred ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCch---------hhCCHHHHHHHHHHHH
Confidence 889999999997 599999988743233334444333322 2333322222 3699999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcC
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
|+.+|++|||||||++||+.+...|.+.|+++.+ +|+|+|+|||+++.+.. ||||+||++|+|++.|+++|+.++.
T Consensus 154 L~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~---~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ---EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH---TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred HHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcCH
Confidence 9999999999999999999999999999999854 47999999999998755 9999999999999999999998753
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.6e-51 Score=419.71 Aligned_cols=215 Identities=25% Similarity=0.400 Sum_probs=181.0
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh-
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK- 527 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~- 527 (695)
-|+++|||++|++ .+||+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+|+...++...++.
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred eEEEEEEEEEECC---eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence 4899999999974 469999999999999999999999999999999999999999999999999999998887665
Q ss_pred hccccCCceeee-eeccccccccCCc--------------CCCchhH----HHHHHHhhHhHhHhcCCCCcccccccccc
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCPK--------------DVKNEDI----EWAAKQAYVHEFILSLPCGYETLVDDDLL 588 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~~--------------~~~~eei----~~A~~~a~l~~fI~~LP~G~dT~vge~~L 588 (695)
|++|||++.+|. .|++|||.++... ...+++. .++++..++.+. .|..+ .+|
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~--~~L 151 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-------YDRKA--GEL 151 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-------TTSBG--GGS
T ss_pred CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchh-------ccCch--hhC
Confidence 999999999885 6999999987310 0112222 122222222222 11211 379
Q ss_pred CCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeE
Q 005467 589 SGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRI 667 (695)
Q Consensus 589 SGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~I 667 (695)
|||||||++|||||..+|++|||||||++||+.+.+.|.+.|+++++ +|+|+|+|||+++.+.. ||||+||++|+|
T Consensus 152 SgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~---~g~til~vsHdl~~~~~~~Drv~vm~~G~i 228 (254)
T d1g6ha_ 152 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA---KGITFLIIEHRLDIVLNYIDHLYVMFNGQI 228 (254)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEECSCCSTTGGGCSEEEEEETTEE
T ss_pred CcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH---CCCEEEEEeCcHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999998853 47999999999999854 999999999999
Q ss_pred EEeccchhhhh
Q 005467 668 IEVGNHAELLH 678 (695)
Q Consensus 668 ve~Gth~eLl~ 678 (695)
+++|+++|+.+
T Consensus 229 v~~g~~~e~~~ 239 (254)
T d1g6ha_ 229 IAEGRGEEEIK 239 (254)
T ss_dssp EEEEESHHHHH
T ss_pred EEEecHHHHhh
Confidence 99999999865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.1e-51 Score=412.83 Aligned_cols=216 Identities=25% Similarity=0.391 Sum_probs=186.4
Q ss_pred ceEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhh
Q 005467 448 GHVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREK 527 (695)
Q Consensus 448 ~~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~ 527 (695)
|.|+++||+++|++ ++||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+.+. ...+|+.
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTT
T ss_pred CCEEEEeEEEEECC---EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC-hHHHHhh
Confidence 56999999999964 4799999999999999999999999999999999999999999999999999874 4678999
Q ss_pred hccccCCceeee-eeccccccccCC-cCCCchh----HHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHH
Q 005467 528 IGFVGQEPQLLQ-MDIKSNIMYGCP-KDVKNED----IEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARA 601 (695)
Q Consensus 528 I~~V~Qd~~LF~-~TI~eNI~~g~~-~~~~~ee----i~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARA 601 (695)
+|||||++.+|. .|++||+.|... ...++++ +.++++..++.++....+ +.||||||||++||||
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~lSgG~~qrv~iA~a 147 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRV---------STYSKGMVRKLLIARA 147 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBG---------GGCCHHHHHHHHHHHH
T ss_pred EeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhh---------hhCCHHHHHHHHHHHH
Confidence 999999999986 599999976521 1223333 344555555554443322 3699999999999999
Q ss_pred hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhc
Q 005467 602 ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHK 679 (695)
Q Consensus 602 ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~ 679 (695)
|+.+|+||||||||++||+.+.+.|.+.++++.+ +|+|+|++||+++.+.. ||||+||++|+|++.|+++|+.++
T Consensus 148 l~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~---~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 148 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ---EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH---TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 9999999999999999999999999999998753 47999999999999875 999999999999999999999865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.5e-50 Score=406.13 Aligned_cols=218 Identities=28% Similarity=0.474 Sum_probs=184.7
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
+++ ++..+|++ ..+ ||||+++ ||++||+||||||||||+++|+|+++|++|+|.+||+|+.++++. |+.||
T Consensus 3 l~v-~~~k~~g~----~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN----FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT----EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC----EEE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCce
Confidence 345 45677753 123 8999995 689999999999999999999999999999999999999988764 78999
Q ss_pred cccCCceeee-eeccccccccCCcCCCc----hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 530 FVGQEPQLLQ-MDIKSNIMYGCPKDVKN----EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 530 ~V~Qd~~LF~-~TI~eNI~~g~~~~~~~----eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
||||++.||. -||+|||.|+. ...+. +++.++++.+++.++.+..| ..||||||||++|||||+.
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l-~~~~~~~~~~~v~~~l~~~gl~~~~~~~~---------~~LSGG~kQRvaiAral~~ 143 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGL-RNVERVERDRRVREMAEKLGIAHLLDRKP---------ARLSGGERQRVALARALVI 143 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTC-TTSCHHHHHHHHHHHHHTTTCTTTTTCCG---------GGSCHHHHHHHHHHHHHTT
T ss_pred eeccchhhcccchhhHhhhhhh-cccCHHHHHHHHHHHHHhcCcHhhhhCCh---------hhCCHHHHHHHHHHHHHhc
Confidence 9999999996 69999999983 33333 45666777777776666655 3699999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccc-cCeEEEeeCCeEEEeccchhhhhcC-ch
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKA-VDRIVVIDDGRIIEVGNHAELLHKG-RL 682 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~-aD~IvvL~~G~Ive~Gth~eLl~~~-g~ 682 (695)
+|++|+||||||+||+.+...|.+.|.++.+. .|.|+|+|||+++.+.. ||||+||++|+|+++|+++|+++.. ..
T Consensus 144 ~P~illlDEPts~LD~~~~~~i~~~i~~l~~~--~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~ 221 (240)
T d2onka1 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE--FDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGE 221 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHH--HTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSS
T ss_pred cCCceEecCccccCCHHHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCCHH
Confidence 99999999999999999999999999988542 36899999999998866 9999999999999999999999764 44
Q ss_pred hHHHHh
Q 005467 683 YAKLVK 688 (695)
Q Consensus 683 Y~~l~~ 688 (695)
+++++.
T Consensus 222 v~~fl~ 227 (240)
T d2onka1 222 VAEFLS 227 (240)
T ss_dssp HHHHGG
T ss_pred HHHHhC
Confidence 455543
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.7e-47 Score=385.69 Aligned_cols=211 Identities=21% Similarity=0.330 Sum_probs=184.2
Q ss_pred EEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 450 VQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 450 I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
++++||+++| +|+||||+|++||++||+||||||||||+++|.|++ |++|+|.++|+|+..++...++...+
T Consensus 4 l~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEECcccCc-------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 7899998665 699999999999999999999999999999999986 68999999999999999999999999
Q ss_pred cccCCce-eeeeeccccccccCCcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc----
Q 005467 530 FVGQEPQ-LLQMDIKSNIMYGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR---- 604 (695)
Q Consensus 530 ~V~Qd~~-LF~~TI~eNI~~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~---- 604 (695)
+++|+.. .|..++.+|+.++..+....+.+.++++..++.+++...| .+||||||||++||||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~LSgG~~Qrv~iA~al~~~~p~ 146 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRST---------NQLSGGEWQRVRLAAVVLQITPQ 146 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBG---------GGCCHHHHHHHHHHHHHHHHCTT
T ss_pred eeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcCh---------hhcCHHHHHHHHHHHHHHhhCcc
Confidence 9999876 5778899999988543344555667777777665543322 3699999999999999997
Q ss_pred ---CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeeccccc-ccCeEEEeeCCeEEEeccchhhhhcC
Q 005467 605 ---DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIK-AVDRIVVIDDGRIIEVGNHAELLHKG 680 (695)
Q Consensus 605 ---~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~-~aD~IvvL~~G~Ive~Gth~eLl~~~ 680 (695)
+|+|||||||||+||+.+.+.|.+.|+++.+ +|+|+|+|||+++.+. .||||++|++|+|++.|+++|++...
T Consensus 147 ~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~---~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 147 ANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ---QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp TCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH---TTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCCh
Confidence 6799999999999999999999999999854 4799999999998865 59999999999999999999998654
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.4e-43 Score=350.74 Aligned_cols=192 Identities=23% Similarity=0.406 Sum_probs=159.5
Q ss_pred eEEEEEEeeecCCCCccceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhh
Q 005467 449 HVQFVNISFHYPSRPTVPILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKI 528 (695)
Q Consensus 449 ~I~f~nVsF~Y~~~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I 528 (695)
.|+++||||+|+ ++||+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+ +|.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcE
Confidence 489999999994 369999999999999999999999999999999999999999999999998864 56789
Q ss_pred ccccCCceeee-eeccccccccC---CcCCCchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhc
Q 005467 529 GFVGQEPQLLQ-MDIKSNIMYGC---PKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILR 604 (695)
Q Consensus 529 ~~V~Qd~~LF~-~TI~eNI~~g~---~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~ 604 (695)
+|+||+..++. -|+.||+.+.. ....+++++.++++..++.+ ++..+ ..||||||||++||||++.
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~--~~LSgG~~qrv~ia~al~~ 142 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKL--GELSQGTIRRVQLASTLLV 142 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBG--GGSCHHHHHHHHHHHHTTS
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc--------ccccc--CcCCCcHHHHHHHHHHHhc
Confidence 99999998875 48999986431 12456777777777665432 22233 2699999999999999999
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEeeC
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVIDD 664 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL~~ 664 (695)
+|+++||||||++||+++++.+++.|.+..++ +++++|+|+- .+..||++.+|.+
T Consensus 143 ~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~----~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 143 NAEIYVLDDPVVAIDEDSKHKVLKSILEILKE----KGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH----HSEEEEEESS-CCTTSSEEEEGGG
T ss_pred CCCEEEEcCcccccCHHHHHHHHHHHHHHHhC----CCEEEEEEec-hhhhcchhhheee
Confidence 99999999999999999999999999987543 4455555553 3567999999854
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=1e-33 Score=293.41 Aligned_cols=317 Identities=19% Similarity=0.268 Sum_probs=277.6
Q ss_pred HHHHHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccc-cceEEEeecchhhhHHHHhhhccccccccee
Q 005467 117 WIALSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQR-EEAMVFHKSSRFLVLLCVTSGIFSGLRSGCF 195 (695)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~-~~~~~~~~~~~~l~~~~i~~~i~~~l~~~~~ 195 (695)
|+.+||+++|++|||+.++.++++.++.++..+..|++++..+|.... .+...+......++++.++.+++.+++.++.
T Consensus 1 Wk~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (319)
T d3b60a2 1 WQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCI 80 (319)
T ss_dssp CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 567899999999999999998888999999999999999988876432 2211111112233344555667788888888
Q ss_pred chhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhccchh
Q 005467 196 SIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSWPLTL 275 (695)
Q Consensus 196 ~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw~l~l 275 (695)
...+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++.+...+..++..++..++.+++++.++|++++
T Consensus 81 ~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l 160 (319)
T d3b60a2 81 SWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI 160 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred hhhhhccccchhhHHHHhhcccchhhccccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhccchh
Confidence 89999999999999999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhccccc
Q 005467 276 SALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRESMAYG 355 (695)
Q Consensus 276 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (695)
++++.+|+..++...+.++.++..++.++..++.++.+.|.++|+++||.|+.|+.+.+++++..++..+...+......
T Consensus 161 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (319)
T d3b60a2 161 ILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999998999999999999999999999999999999999999999999999999999988888766665
Q ss_pred cceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccCCc
Q 005467 356 LWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLLPS 433 (695)
Q Consensus 356 ~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~~~ 433 (695)
.......++..+..++++++|++++.+|++|+|+++++..|...+..|+..+++.+..++++.++.+|++|++|.+||
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred hcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 555555555556667788899999999999999999999999999999999999999999999999999999998876
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.97 E-value=8.6e-33 Score=287.33 Aligned_cols=314 Identities=18% Similarity=0.226 Sum_probs=269.2
Q ss_pred HHHHHHHhccceEEEehhHHHHHHHHhhccchhhHHHHhhhcccccceEE-Eeecch-------hhhHHHHhhhcccccc
Q 005467 120 LSRMWNLIGRDKWIVLVAVASLIVAAVSEITMPRILAEAVFSAQREEAMV-FHKSSR-------FLVLLCVTSGIFSGLR 191 (695)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~i~~~~~~~~~~-~~~~~~-------~l~~~~i~~~i~~~l~ 191 (695)
+||+++|++|||+.++.++++.++.++..+..|++++..+|.....+... ...... .+.++.++.+++.+++
T Consensus 2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (323)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999988888888888888899999998887643221100 000000 1112233445566777
Q ss_pred cceechhhhHHHHHHHHHHHHhhhccccccccccccccccccccchhhhhhhhhccchhHHHHHhhccchhhhHHHHhhc
Q 005467 192 SGCFSIANIVLVKRLRETLYSALLFQDVYFFDTEAVGGLTSRLTADCQRLSNVIGNDINMILRNSLQGAGAFINLLTLSW 271 (695)
Q Consensus 192 ~~~~~~~~~~~~~~lr~~lf~~ll~~~~~ff~~~~~G~l~srl~~D~~~i~~~~~~~l~~l~~~~~~~v~~~i~l~~~sw 271 (695)
.++..+.+.++..++|.++|+|++++|++||+++++|++++|+++|++++++.+...+..++..++..++.++++++++|
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 161 (323)
T d2hyda2 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV 161 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhhhHHHHHHHhhhhhcccccccccccccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhhhh
Confidence 77888888999999999999999999999999999999999999999999999888888888899999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhhhhHhhHhhhcchhhHHHhhhheeEEEeecchhhhhhhHHHHHHHhhcchhhhc
Q 005467 272 PLTLSALLICSFLSIIVSVYGQYQKRASVLTQECNAHANNVAQETLCMMRTVRVYGTEEKELGRYKIWLEKLAFIRIRES 351 (695)
Q Consensus 272 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 351 (695)
++++++++..|+..++...+.++.++..++.++..++.++.+.|.++|+++||.||.|+.+.++|++..++..+...+..
T Consensus 162 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~ 241 (323)
T d2hyda2 162 KLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241 (323)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888776
Q ss_pred cccccceeehhhhhhhheehheeecceeeeccccChhhhhhhhhhhhheeeeeeecccchhHHHHhhcchhhHHHhhccC
Q 005467 352 MAYGLWNMSFITLYRSTQVMAVLLGGMSIMIGQVSPEQLTKYVLYCEWLIYATWRMVDNLSSLLQSIGATEKVFQLIDLL 431 (695)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~~~l~~g~~~v~~g~is~G~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~a~~rl~~~l~~~ 431 (695)
............+..+..++++++|++++.+|.+|+|++++++.+...+..|+..+++.+..++++.++.+|++|++|+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e 321 (323)
T d2hyda2 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 65555555555566666777888999999999999999999999999999999999999999999999999999999988
Q ss_pred Cc
Q 005467 432 PS 433 (695)
Q Consensus 432 ~~ 433 (695)
||
T Consensus 322 ~e 323 (323)
T d2hyda2 322 YD 323 (323)
T ss_dssp CS
T ss_pred CC
Confidence 74
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.81 E-value=4.7e-21 Score=182.99 Aligned_cols=161 Identities=14% Similarity=0.078 Sum_probs=119.8
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCchhH
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKNEDI 559 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~eei 559 (695)
+++|+||+|||||||++.++|+++|..|.+.++|.+....+...........++...++..+..++.+.+. ...+.+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 79 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS-YGVNVQY- 79 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT-EEECHHH-
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhh-hhcCcch-
Confidence 58999999999999999999999999999999998766555444444456677777777777766655441 1111111
Q ss_pred HHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhccccC
Q 005467 560 EWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKT 639 (695)
Q Consensus 560 ~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~ 639 (695)
..+|+|++||.++|+++.++|++|++|||+...+. .....+.+.+..++ .
T Consensus 80 --------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~--~ 129 (178)
T d1ye8a1 80 --------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHD--P 129 (178)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTC--T
T ss_pred --------------------------hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchh--hHHHHHHHHHHhcc--C
Confidence 14799999999999999999999999998655442 23344555554432 3
Q ss_pred cceEEEEeeecccccccCeEEEeeCCeEEEecc
Q 005467 640 KRTVIVIAHRLSTIKAVDRIVVIDDGRIIEVGN 672 (695)
Q Consensus 640 ~~TvIiIaHrlsti~~aD~IvvL~~G~Ive~Gt 672 (695)
+.|+|+++|+.+....+|++..+++|++++.+.
T Consensus 130 ~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 130 NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CCEEEEEEccHHHHHhhceEEEEeCCEEEEECC
Confidence 689999999998888899999999999998764
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.24 E-value=3.8e-12 Score=136.30 Aligned_cols=73 Identities=27% Similarity=0.382 Sum_probs=61.1
Q ss_pred ccCCccchhHHHHHH----hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEEe
Q 005467 587 LLSGGQKQRIAIARA----ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVVI 662 (695)
Q Consensus 587 ~LSGGQkQRIaIARA----ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~IvvL 662 (695)
.||||||.++++|=. -+.++|+++||||+++||+.+...+.+.|.+... .+.-+|+|||++.++..||+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~---~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN---PDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB---TTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC---CCCEEEEEeCCHHHHHhcccEEEE
Confidence 679999999887633 2467899999999999999999999999977632 234599999999999999998755
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.13 E-value=6.8e-11 Score=121.46 Aligned_cols=75 Identities=29% Similarity=0.417 Sum_probs=64.1
Q ss_pred ccCCccchhHHHHHH----hhcCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccccccCeEEE-
Q 005467 587 LLSGGQKQRIAIARA----ILRDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTIKAVDRIVV- 661 (695)
Q Consensus 587 ~LSGGQkQRIaIARA----ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti~~aD~Ivv- 661 (695)
.+|+|||+.+.++-. ...+|+++++|||-++||+.....+.+.|++..+ +.=+|++||++..+..+|+++.
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~----~~QviitTHsp~~~~~~d~~~~v 294 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK----HTQFIVITHNKIVMEAADLLHGV 294 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT----TSEEEEECCCTTGGGGCSEEEEE
T ss_pred hhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc----CCEEEEEECCHHHHHhcccEEEE
Confidence 689999999877665 3456799999999999999999999999988743 4679999999999999999955
Q ss_pred -eeCC
Q 005467 662 -IDDG 665 (695)
Q Consensus 662 -L~~G 665 (695)
+++|
T Consensus 295 ~~~~g 299 (308)
T d1e69a_ 295 TMVNG 299 (308)
T ss_dssp EESSS
T ss_pred EEeCC
Confidence 6777
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=2.1e-07 Score=86.30 Aligned_cols=137 Identities=15% Similarity=-0.022 Sum_probs=82.6
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCC--Cc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV--KN 556 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~--~~ 556 (695)
+.|.|+||+|+|||||++.+.+.+....+.+.+.+.+........+...++-+.|+...+.....++......... ..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYV 81 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccccccccccccccccccchhhhhhhhhhhhhhhhhcccccccc
Confidence 3589999999999999999999999888888777665443333333334555677777666666565543311111 01
Q ss_pred hhHHHHHHHhh-HhHhHhcC-CCCccccccc--cccCCccchhHHHHHHhhcCCcEEEEeccc
Q 005467 557 EDIEWAAKQAY-VHEFILSL-PCGYETLVDD--DLLSGGQKQRIAIARAILRDPAILLLDEAT 615 (695)
Q Consensus 557 eei~~A~~~a~-l~~fI~~L-P~G~dT~vge--~~LSGGQkQRIaIARAll~~p~ILILDEaT 615 (695)
.........+. ..+.+... ..+.+..+.+ ...+......+.+.|.++.+++++++...+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (189)
T d2i3ba1 82 VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIP 144 (189)
T ss_dssp ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECC
T ss_pred ccHHHHHHHHHHHHHHHHHHhhcCCCeeEeeccccchhhhHHHHHHHHHHhccCceEEEeccc
Confidence 11111111111 11222222 2345555554 266777888899999999988777665433
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=1.2e-05 Score=77.26 Aligned_cols=67 Identities=24% Similarity=0.409 Sum_probs=54.6
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhc--------------CCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeec
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE--------------PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDI 542 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~--------------p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI 542 (695)
.|..+.|+||||||||||.+.|..-++ |-.|++ ||+|+.-++.+.+.+.+ .+.-++..+++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~--~G~dY~Fvs~~~F~~~i---~~g~flE~~~~ 75 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEV--HGEHYFFVNHDEFKEMI---SRDAFLEHAEV 75 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCcccc--ccccceeecHHHHHHHh---hhhhheeEEEE
Confidence 488999999999999999998876543 334664 99999999999888765 45778888888
Q ss_pred ccccccc
Q 005467 543 KSNIMYG 549 (695)
Q Consensus 543 ~eNI~~g 549 (695)
..| .||
T Consensus 76 ~g~-~YG 81 (205)
T d1s96a_ 76 FGN-YYG 81 (205)
T ss_dssp TTE-EEE
T ss_pred CCc-eec
Confidence 888 677
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.71 E-value=7e-06 Score=76.95 Aligned_cols=67 Identities=28% Similarity=0.342 Sum_probs=51.6
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcC------------CCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEP------------SDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p------------~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eN 545 (695)
|+.+.|+||||||||||++.|..-++. -.|+ .||.|..-++.+.+.+.+ .++.++-.+....|
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e--~~G~dy~fvs~~~f~~~~---~~~~f~e~~~~~~~ 76 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGE--VDGVDYHFIDPTRFQQLI---DQGELLEWAEIHGG 76 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTC--CBTTTBEECCHHHHHHHH---HTTCEEEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccc--cCCcceeeccchhhhhhh---cccccchhhhcccC
Confidence 899999999999999999999887642 2344 378888888888877653 45666777777777
Q ss_pred c-ccc
Q 005467 546 I-MYG 549 (695)
Q Consensus 546 I-~~g 549 (695)
. .+|
T Consensus 77 ~~~~g 81 (182)
T d1znwa1 77 LHRSG 81 (182)
T ss_dssp TEEEE
T ss_pred ccccc
Confidence 6 355
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.46 E-value=3.4e-05 Score=72.26 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=53.4
Q ss_pred cEEEEEeecCCChhhHHHHHHhhh-------------cCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLY-------------EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSN 545 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly-------------~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eN 545 (695)
+.+.|+||||||||||++.|+.-+ +|-.|++ ||+|+.=++.+.+++.+ .++-++-...+..|
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~--~G~dY~Fvs~~~F~~~~---~~g~fie~~~~~g~ 78 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEE--NGKNYYFVSHDQMMQDI---SNNEYLEYGSHEDA 78 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETTE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccc--cCccceeeehhhhhhhe---ecCceEEEeeeccc
Confidence 579999999999999999888654 2345665 89998878888887754 34666777777665
Q ss_pred ccccCCcCCCchhHHHHHH
Q 005467 546 IMYGCPKDVKNEDIEWAAK 564 (695)
Q Consensus 546 I~~g~~~~~~~eei~~A~~ 564 (695)
.||- +.+++.++++
T Consensus 79 -~YGt----~~~~i~~~~~ 92 (178)
T d1kgda_ 79 -MYGT----KLETIRKIHE 92 (178)
T ss_dssp -EEEE----EHHHHHHHHH
T ss_pred -ceee----eeecccchhc
Confidence 6882 2445554443
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.44 E-value=2.5e-05 Score=71.52 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=23.9
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.|+.++|+||+||||||+++.|.+-+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998765
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=3.7e-05 Score=69.94 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=29.0
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d 515 (695)
+++|+|++|||||||++-|.+.+....-++-+...+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d 39 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 39 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEeccc
Confidence 689999999999999999999887665555554433
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.37 E-value=6.6e-05 Score=70.48 Aligned_cols=64 Identities=27% Similarity=0.461 Sum_probs=50.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhh-------------cCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY-------------EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 546 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly-------------~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI 546 (695)
-|.|+|||||||+||++.|+.-+ +|-.|++ ||+|..-++.+.+.+.+. +.-++..+.+..|
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~--~g~dy~fvs~~~f~~~~~---~g~f~e~~~~~g~- 76 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMIK---NNEFIEWAQFSGN- 76 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC--BTTTEEECCHHHHHHHHH---TTCEEEEEEETTE-
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCc--CCccceeccHHHHHHHHh---cccceeeeEEccc-
Confidence 38899999999999999887654 3456766 899999999888876654 5667778888777
Q ss_pred ccc
Q 005467 547 MYG 549 (695)
Q Consensus 547 ~~g 549 (695)
.||
T Consensus 77 ~Yg 79 (186)
T d1gkya_ 77 YYG 79 (186)
T ss_dssp EEE
T ss_pred eee
Confidence 566
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.36 E-value=0.00035 Score=67.46 Aligned_cols=59 Identities=14% Similarity=0.203 Sum_probs=40.1
Q ss_pred CCcEEEEeccccccCcccchhhhhHHHhhhccc-cCcceEEEEeeecc----------ccc-ccCeEEEee
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVLHALRNDC-KTKRTVIVIAHRLS----------TIK-AVDRIVVID 663 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~-~~~~TvIiIaHrls----------ti~-~aD~IvvL~ 663 (695)
+|+++++|--++.+...++..+.+.+..+.+-. ..+.|+++++|--. .++ .||-|+.|+
T Consensus 116 ~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 116 KPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp CCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred CCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 589999999988887777766666655432111 24688899888421 133 499999886
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.30 E-value=0.00021 Score=63.70 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=24.0
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG 513 (695)
+.+.|+|++||||||+++.|.+-. .|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEech
Confidence 478899999999999999776533 35555543
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.29 E-value=0.00011 Score=66.44 Aligned_cols=32 Identities=34% Similarity=0.534 Sum_probs=26.5
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG 513 (695)
+.+.|+||+||||||+++.|++-++ +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 4689999999999999999999874 4555554
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.20 E-value=6.5e-05 Score=68.61 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=25.3
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
++|-+|.|+|+|||||||+.+.|+.-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4699999999999999999999997764
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.17 E-value=0.00096 Score=64.38 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=33.5
Q ss_pred cCCcEEEEeccccccCcccchhhhhHHHhhhccccCcceEEEEeeecccc
Q 005467 604 RDPAILLLDEATSALDSESEHYVKGVLHALRNDCKTKRTVIVIAHRLSTI 653 (695)
Q Consensus 604 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~~~~~~TvIiIaHrlsti 653 (695)
.+..++++||...+=|++.-..+-.++-+.... .+.+++++||..+..
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~--~~~~~i~tTH~~eL~ 160 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELT 160 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHH
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhh--cCcceEEeeechhhh
Confidence 345699999999999987666555554443321 357899999976553
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.14 E-value=0.00081 Score=66.38 Aligned_cols=45 Identities=27% Similarity=0.259 Sum_probs=31.0
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh-hhcCCCceEEE
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR-LYEPSDGQIYI 511 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r-ly~p~~G~I~i 511 (695)
-|+++.-=+.||+.+.|.|+||+||||++.-++. +..-+.-.|.+
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~ 69 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL 69 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeE
Confidence 3444443378999999999999999999776664 43223334544
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.00079 Score=66.21 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=25.1
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHHh
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
.++.++ .||+.+.|+|++|+||||++--|+-
T Consensus 21 ~li~G~----~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 21 YVLPNM----VAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EEETTE----ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHhCCc----cCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 466663 4699999999999999999876654
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.06 E-value=9.9e-05 Score=71.40 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=25.3
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceE
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I 509 (695)
+|++++++|+||+|||||+|.|.+-..-..|+|
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v 126 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 126 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCc
Confidence 599999999999999999999987554434443
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.05 E-value=0.00017 Score=67.89 Aligned_cols=64 Identities=27% Similarity=0.424 Sum_probs=47.0
Q ss_pred EEEEEeecCCChhhHHHHHHhhh-------------cCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY-------------EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNI 546 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly-------------~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI 546 (695)
.+.|+||||||||||++.|+..+ +|-.|+. +|.|..-++.+.+.+.+. +.-++..+.+..|
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~--~g~dy~fvs~~~f~~~~~---~g~~~e~~~~~~~- 75 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE--DGKDYYFVTREMMQRDIA---AGDFIEHAEFSGN- 75 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHHH---HTCEEEEEEETTE-
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCc--cCceeEEeehhHHHHHhh---hhhheeeeEEcCc-
Confidence 37899999999999999987764 3345765 888888888887765543 3455666666665
Q ss_pred ccc
Q 005467 547 MYG 549 (695)
Q Consensus 547 ~~g 549 (695)
.||
T Consensus 76 ~Yg 78 (190)
T d1lvga_ 76 LYG 78 (190)
T ss_dssp EEE
T ss_pred cee
Confidence 566
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.03 E-value=0.00016 Score=66.37 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=28.2
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCceEE
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~ 510 (695)
+++|+|.|++||||||+++.|...+......+.
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~ 33 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYK 33 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence 478999999999999999999998876655544
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.94 E-value=0.00014 Score=66.53 Aligned_cols=24 Identities=46% Similarity=0.639 Sum_probs=22.5
Q ss_pred cEEEEEeecCCChhhHHHHHHhhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++|+|+||+|||||||++.|..-|
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999987
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.92 E-value=0.00019 Score=65.29 Aligned_cols=28 Identities=18% Similarity=0.399 Sum_probs=25.4
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
|+|-.++|.||+||||||+.+.|..-|.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999988764
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.00093 Score=65.83 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=23.6
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+..-+.+.||+|||||++++.+++.+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 445688999999999999999999873
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.92 E-value=0.00021 Score=65.27 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=26.0
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCceE
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I 509 (695)
++++|+|++|||||||++-|.+.+.....+|
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v 32 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRV 32 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeE
Confidence 4789999999999999998888887654444
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.90 E-value=0.0016 Score=61.75 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=28.9
Q ss_pred eecCcEEEEEeecCCChhhHH-HHHHhhhcCCCceEEEc
Q 005467 475 IEANEVVAIVGLSGSGKSTFV-NLLLRLYEPSDGQIYID 512 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl-~LL~rly~p~~G~I~id 512 (695)
+++|+.+.|.|++|+||||++ +++..........+++.
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~ 61 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFV 61 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccc
Confidence 889999999999999999997 45554444444455543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.87 E-value=0.00023 Score=64.66 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=24.0
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.+.|.|.|+|||||||+++.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999999984
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.86 E-value=0.00022 Score=66.13 Aligned_cols=25 Identities=44% Similarity=0.546 Sum_probs=22.7
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcC
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
+|||.|+|||||||+++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6999999999999999999887764
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.00022 Score=64.75 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=24.8
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+.+.++.|.||+||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 568899999999999999999999876
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=0.00013 Score=67.86 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=24.6
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+|-+|.|+|+|||||||+.+.|+..+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999988764
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.00027 Score=62.97 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.6
Q ss_pred cEEEEEeecCCChhhHHHHHHhhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+.+.|+||+||||||+.++|+.-+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998876
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.74 E-value=0.00012 Score=71.04 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=22.9
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEE
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~ 510 (695)
+|++++++|+||+|||||+|.|.+-..-..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 5899999999999999999999987766666665
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.72 E-value=0.00047 Score=63.73 Aligned_cols=26 Identities=46% Similarity=0.627 Sum_probs=21.9
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHh
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
-++-+.+.++|++||||||+++-++.
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35668999999999999999987753
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.68 E-value=0.00031 Score=63.57 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=21.0
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++.|+||+||||||+++.|+.-|
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998776
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.64 E-value=0.0021 Score=62.86 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.5
Q ss_pred EEEEeecCCChhhHHHHHHhhh
Q 005467 481 VAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 481 vAIVG~SGSGKSTLl~LL~rly 502 (695)
+.+.||+|||||++++.+++.+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 7899999999999999999865
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.63 E-value=0.00044 Score=64.62 Aligned_cols=32 Identities=31% Similarity=0.477 Sum_probs=26.8
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
+..+|+|+||+||||||+++.|+.-| |-+.++
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH----CCceEc
Confidence 34689999999999999999999888 445554
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.0067 Score=58.59 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=31.7
Q ss_pred CCcEEEEeccccccCcccchhhhhHH-HhhhccccCcceEEEEeeeccc
Q 005467 605 DPAILLLDEATSALDSESEHYVKGVL-HALRNDCKTKRTVIVIAHRLST 652 (695)
Q Consensus 605 ~p~ILILDEaTSaLD~~tE~~I~~~L-~~~~~~~~~~~TvIiIaHrlst 652 (695)
+..++++||.-++=|++.-..+-.++ +.+.. ..+..+++.||....
T Consensus 120 ~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~--~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 120 EYSLVLMDEIGRGTSTYDGLSLAWACAENLAN--KIKALTLFATHYFEL 166 (234)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHH--TTCCEEEEECSCGGG
T ss_pred cccEEeecccccCCChhhhhHHHHHhhhhhhc--cccceEEEecchHHH
Confidence 45699999999999998877776554 34422 234567777776544
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.54 E-value=0.00053 Score=63.86 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=28.1
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
|+|=.+.|+||.||||||+.++|+.-| |-..|+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~----g~~~i~ 33 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF----CVCHLA 33 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH----TCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 678899999999999999999999877 444444
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.54 E-value=0.00039 Score=71.02 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=34.0
Q ss_pred eeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 472 CLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 472 sl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
..-++.|..+.|+|++||||||+++.|+++.+|..=-|.|-
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE 200 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 200 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHHHhCCCEEEEeeccccchHHHHHHhhhcccccceeecc
Confidence 34456678899999999999999999999998876666663
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.53 E-value=0.0014 Score=63.30 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEeecCCChhhHHHHHHhhh
Q 005467 481 VAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 481 vAIVG~SGSGKSTLl~LL~rly 502 (695)
+.|.||.|+||||+++.++.-+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 7899999999999999999875
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=8.8e-05 Score=68.71 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=29.0
Q ss_pred eeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 468 LNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 468 L~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++.++++.+| ++.|+||+||||||++..|.-..
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 56777888776 89999999999999999997554
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.42 E-value=0.00036 Score=66.66 Aligned_cols=42 Identities=26% Similarity=0.237 Sum_probs=31.9
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC--CCceEEEcCccCC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP--SDGQIYIDGFPLT 517 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p--~~G~I~idG~di~ 517 (695)
++|.++-+.|.||||||||.+.|..-+.. .--.+.+||-+++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence 68899999999999999999998754421 2235678886554
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.39 E-value=0.00072 Score=63.23 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=27.1
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
+-.++.|+||+||||||++++|+.-| |-+.|+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 45579999999999999999999988 555565
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.36 E-value=0.00072 Score=64.11 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.8
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+|||.|+|||||||+.+.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887765
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.34 E-value=0.0072 Score=57.39 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=24.2
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di 516 (695)
+..++++|||+|+||||.+-=|+..|.-...+|.+=..|.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt 50 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADV 50 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeec
Confidence 4567999999999999877666777764444555444443
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.31 E-value=0.00077 Score=63.13 Aligned_cols=43 Identities=23% Similarity=0.442 Sum_probs=31.5
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIG 529 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~ 529 (695)
.++++|.+||||||+++.|++.+.-. |.+..-++.+.+|+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~~~-------~~~~~~~~~D~~r~~~~ 46 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLNFI-------GVPTREFNVGQYRRDMV 46 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-------CCCCeEEcccceehhhc
Confidence 58999999999999999999988632 33333445566666553
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.30 E-value=0.00069 Score=63.38 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=63.8
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCC
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDV 554 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~ 554 (695)
++++.++.|+||+||||||+++.|+.-| |-+.|+--+ -+|+.+.- .+. ....+.+.+.-| ...
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~-------llr~~~~~---~~~-~~~~~~~~~~~~--~~~ 67 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD-------LLRAEVSS---GSA-RGKMLSEIMEKG--QLV 67 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH-------HHHHHHHH---TCH-HHHHHHHHHTTT--CCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEeccH-------HHHHHHHH---hHh-hhhhhHHHHhhc--cCC
Confidence 5678999999999999999999999977 555554211 22322211 111 112233333323 234
Q ss_pred CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEecccc
Q 005467 555 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATS 616 (695)
Q Consensus 555 ~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTS 616 (695)
+++-+....+.. +...++..+-.+= .+...-..|--.+.+.+-....++.+|.+..
T Consensus 68 ~~~~~~~~~~~~-----l~~~~~~~~g~il-dg~pr~~~qa~~~~~~~~~~~~~~~~~~~~~ 123 (194)
T d3adka_ 68 PLETVLDMLRDA-----MVAKVDTSKGFLI-DGYPREVKQGEEFERKIGQPTLLLYVDAGPE 123 (194)
T ss_dssp CHHHHHHHHHHH-----HHTTTTTCSCEEE-ESCCSSHHHHHHHHHHTCCCSEEEEEECCHH
T ss_pred chheeeeehhhh-----hhhccccccccee-eeccchhHHHHHHHHHhCCccchhccccchh
Confidence 455454444332 2222221111111 2355566777777777766666666665543
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.28 E-value=0.0033 Score=61.96 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=24.7
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++..-+.+.||+|+|||++++.+++.+
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 4455669999999999999999999988
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.26 E-value=0.00088 Score=62.49 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=20.4
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+|||||++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999973
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.24 E-value=0.0091 Score=58.00 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.2
Q ss_pred cEEEEEeecCCChhhHHHHHHhhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly 502 (695)
..+.+.||+|||||++++.|++-.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhcc
Confidence 458899999999999999998754
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.23 E-value=0.00098 Score=61.42 Aligned_cols=22 Identities=50% Similarity=0.605 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+|||+|++|+|||||++.|+|-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999864
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.16 E-value=0.00099 Score=60.51 Aligned_cols=29 Identities=31% Similarity=0.604 Sum_probs=24.4
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
.+.|+|++||||||+.++|+.-+ |--++|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d 30 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLD 30 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHHh----CCCEEe
Confidence 48899999999999999998887 445555
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.14 E-value=0.0012 Score=60.39 Aligned_cols=25 Identities=24% Similarity=0.512 Sum_probs=22.5
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+++.|.|++||||||+++.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4677899999999999999999885
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.13 E-value=0.001 Score=60.76 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=24.8
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG 513 (695)
+.+.++|++||||||+.++|+.-+ |--++|+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L----g~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL----GYEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH----TCEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh----CCCEEeh
Confidence 467899999999999999998766 3345554
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.04 E-value=0.0013 Score=60.34 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.9
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+|+|||++|+|||||++.|.|
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~ 22 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTG 22 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999986
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0014 Score=60.87 Aligned_cols=29 Identities=31% Similarity=0.500 Sum_probs=24.4
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
++.|+||+||||||.++.|+.-| |-..|+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~ 31 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLS 31 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEc
Confidence 58999999999999999999877 444453
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.97 E-value=0.0014 Score=60.81 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=21.4
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++.|.||+||||||++++|+.-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999888
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.95 E-value=0.0015 Score=59.75 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++.|+||+||||||++++|+--|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998887
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.0016 Score=61.33 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=22.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+|+|-||+||||||+.++|+.-|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999999999999998884
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0012 Score=63.40 Aligned_cols=27 Identities=44% Similarity=0.591 Sum_probs=24.8
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+++.|+|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999999874
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.87 E-value=0.0017 Score=61.54 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=22.1
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
++||-||+||||||+.++|+.-|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999884
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.86 E-value=0.0026 Score=60.75 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=21.5
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+|+|+|+.|||||||++-|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 589999999999999999987663
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.002 Score=59.70 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=24.6
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|+.+.|.||+||||||++.-++.-.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999987776543
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.86 E-value=0.0016 Score=59.32 Aligned_cols=22 Identities=45% Similarity=0.584 Sum_probs=19.9
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+|+|+|++|+|||||++-|+|-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.0019 Score=65.25 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=22.2
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+|||.|+|||||||+.+.|..+..
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 689999999999999999998874
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.79 E-value=0.0019 Score=57.22 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.1
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
++.|+|++|||||||++-+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999998865
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.79 E-value=0.002 Score=59.38 Aligned_cols=23 Identities=30% Similarity=0.653 Sum_probs=21.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++.|+||.||||||++++|+.-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999988
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.002 Score=57.60 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.8
Q ss_pred CcEEEEEeecCCChhhHHHHHHh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
|=+++++|++|+|||||++-|.|
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~ 23 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAG 23 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44799999999999999999985
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.78 E-value=0.0019 Score=60.38 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=20.1
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+|+|||++|+|||||++.|.+
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~ 25 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTT 25 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999986
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.78 E-value=0.002 Score=59.71 Aligned_cols=22 Identities=45% Similarity=0.616 Sum_probs=19.7
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
++||.|++||||||+++.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999998653
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.75 E-value=0.002 Score=64.26 Aligned_cols=45 Identities=18% Similarity=0.375 Sum_probs=28.5
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCce-EEEcCccCCcchhHHH
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGFPLTDLDIRWL 524 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~-I~idG~di~~i~~~~l 524 (695)
+|||.|+|||||||+.+.|...+...+-+ +.|.+-+...++..+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfyr~~R~~~ 51 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADM 51 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCCccchhhh
Confidence 79999999999999999998877543222 3455545554444433
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.74 E-value=0.0021 Score=57.39 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|||.+|+|||||++-+.+=
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999988653
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.73 E-value=0.0018 Score=58.82 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=21.5
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+.-+++|||++|+|||||++-|.+=.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34479999999999999999987643
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.73 E-value=0.002 Score=59.08 Aligned_cols=22 Identities=55% Similarity=0.690 Sum_probs=20.5
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+|+|||++|+|||||++.|+|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.71 E-value=0.0019 Score=58.53 Aligned_cols=23 Identities=43% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+.++|++||||||+.++|+.-+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999998877
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.70 E-value=0.0022 Score=56.71 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.3
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
++++||++|+|||||++-|.+=
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.66 E-value=0.0013 Score=60.68 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=19.8
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
-|||||++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999763
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.0026 Score=58.26 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=21.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++.|+||+||||||+.+.|+.-|
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999877
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.62 E-value=0.024 Score=55.62 Aligned_cols=61 Identities=20% Similarity=0.353 Sum_probs=46.1
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcCCCce-EEEcCccCCcchhHHHHhhhccccCCceeeeeecccccccc
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYG 549 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~-I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g 549 (695)
+|.|.++-|.||+||||||++..++.-.+-..|. ++||... .++++ +.+.+|+ |+ ||+.+.
T Consensus 54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~-~a~~~Gv---d~--------d~i~~~ 115 (268)
T d1xp8a1 54 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPV-YARALGV---NT--------DELLVS 115 (268)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHH-HHHHTTC---CG--------GGCEEE
T ss_pred ccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc--cCCHH-HHHHhCC---Cc--------hhEEEE
Confidence 7899999999999999999998888887755554 6677653 45554 4556787 22 577777
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.0024 Score=58.09 Aligned_cols=21 Identities=52% Similarity=0.702 Sum_probs=19.8
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+|+|+|.+|+|||||+|.|.|
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999987
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.57 E-value=0.0039 Score=59.15 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=31.3
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~ 517 (695)
++.++++|||+|+||||.+-=|+..+.-..-+|.+=..|..
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~ 45 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 45 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccc
Confidence 57899999999999999877778888755556665555543
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.50 E-value=0.012 Score=61.21 Aligned_cols=30 Identities=40% Similarity=0.616 Sum_probs=24.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceE
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I 509 (695)
.|||+|++|+|||||+|.|.|...-..|.+
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~ 87 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEGAA 87 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCccC
Confidence 489999999999999999999765444443
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.49 E-value=0.0025 Score=59.22 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.6
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.-+|+|-|++||||||++++|...+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999999876
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.49 E-value=0.0017 Score=59.53 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.5
Q ss_pred EEEEeecCCChhhHHHHHHhh
Q 005467 481 VAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 481 vAIVG~SGSGKSTLl~LL~rl 501 (695)
|||+|.+|+|||||++.|.|-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999764
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=0.036 Score=52.02 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcC
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
.+.+.||.|+||||+++.+++.+--
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~~ 50 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLLC 50 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHHHhccc
Confidence 4899999999999999999997743
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.45 E-value=0.011 Score=58.13 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=51.9
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCce-EEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPK 552 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~-I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~ 552 (695)
=+++|.++-|.||+||||||++-.++.-..-..|. |+||... .++++.+ +++|+ |+ ||+.+.. +
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a-~~~Gv---D~--------d~il~~~-~ 120 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYA-KKLGV---DT--------DSLLVSQ-P 120 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHH-HHHTC---CG--------GGCEEEC-C
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHH-HHhCC---CH--------HHeEEec-C
Confidence 48899999999999999999988888888777776 6778765 3455544 45675 22 5777763 3
Q ss_pred CCCchhHHHHH
Q 005467 553 DVKNEDIEWAA 563 (695)
Q Consensus 553 ~~~~eei~~A~ 563 (695)
+ +-|++.+.+
T Consensus 121 ~-~~E~~~~~~ 130 (269)
T d1mo6a1 121 D-TGEQALEIA 130 (269)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 3 445554443
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.39 E-value=0.0046 Score=55.76 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.1
Q ss_pred CcEEEEEeecCCChhhHHHHHHh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
.-+++|+|++|+|||||++-+.+
T Consensus 4 ~~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 4 SRKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHh
Confidence 34799999999999999998764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.0045 Score=56.01 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=22.7
Q ss_pred EEEEEeecCCChhhHHHHHHh-----hhcCCCc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR-----LYEPSDG 507 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r-----ly~p~~G 507 (695)
+++++|.+|+|||||++-+.+ -|.|+-|
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~ 36 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 36 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCccee
Confidence 589999999999999987664 4566655
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.38 E-value=0.0035 Score=57.51 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=21.4
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+.|.||+||||||+.+.|+.-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999888
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.33 E-value=0.0033 Score=61.62 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.5
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+++|+|++|+||||++|.|+|-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4999999999999999999984
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.32 E-value=0.0017 Score=58.18 Aligned_cols=22 Identities=45% Similarity=0.558 Sum_probs=20.5
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
++|++|++|+|||||++.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.32 E-value=0.027 Score=55.71 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+++||...||||||+|.|+|.=
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 49999999999999999999955
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.29 E-value=0.011 Score=56.43 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=39.1
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceee
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLL 538 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF 538 (695)
.+.+.||+|+||||++++++.-+....+ .++|.+... ...+++.+.-..+...+|
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 91 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH--VTSGPVLVK--QGDMAAILTSLERGDVLF 91 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE--EEETTTCCS--HHHHHHHHHHCCTTCEEE
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCCcc--cccCccccc--HHHHHHHHHhhccCCchH
Confidence 3789999999999999999999987654 457766643 345555554444545444
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.29 E-value=0.0021 Score=58.59 Aligned_cols=24 Identities=38% Similarity=0.351 Sum_probs=20.8
Q ss_pred cEEEEEeecCCChhhHHHHHHhhh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly 502 (695)
=+|+|||++++|||||+|.|.+-.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 359999999999999999997754
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.25 E-value=0.0046 Score=56.80 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.7
Q ss_pred EEEEeecCCChhhHHHHHHhh
Q 005467 481 VAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 481 vAIVG~SGSGKSTLl~LL~rl 501 (695)
|||||...+|||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 999999999999999999863
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.17 E-value=0.0045 Score=56.17 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.9
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
++++||++|+|||||++-+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999998764
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.14 E-value=0.0038 Score=58.80 Aligned_cols=21 Identities=43% Similarity=0.669 Sum_probs=18.8
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
++||+|++||||||+++++..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.11 E-value=0.0049 Score=57.99 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=24.8
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+|+.|+|-|+-||||||++++|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999998764
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.05 E-value=0.0046 Score=55.52 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.5
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++|||++|||||||++-|.+-+
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999987644
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.04 E-value=0.02 Score=56.06 Aligned_cols=54 Identities=24% Similarity=0.335 Sum_probs=40.8
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCce-EEEcCccCCcchhHHHHhhhcc
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ-IYIDGFPLTDLDIRWLREKIGF 530 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~-I~idG~di~~i~~~~lR~~I~~ 530 (695)
=|++|.++-|.||+||||||++--++.-..-..|. +++|... .++.+ +-+.+|+
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~--~~~~~-~a~~~Gv 104 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH--ALDPI-YARKLGV 104 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHH-HHHHTTC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc--ccCHH-HHHHhCC
Confidence 37899999999999999999988888777655555 6787764 34443 3456676
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.98 E-value=0.0099 Score=56.17 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=25.9
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
++|..|+|-|+-||||||++++|..-+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999887653
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=94.97 E-value=0.013 Score=50.93 Aligned_cols=32 Identities=22% Similarity=0.133 Sum_probs=22.1
Q ss_pred HhhcCCcEEEEeccccccCcccchhhhhHHHhh
Q 005467 601 AILRDPAILLLDEATSALDSESEHYVKGVLHAL 633 (695)
Q Consensus 601 All~~p~ILILDEaTSaLD~~tE~~I~~~L~~~ 633 (695)
-.+++-+++|+||+= .+|.++...+...++..
T Consensus 90 ~~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~ 121 (136)
T d1a1va1 90 CSGGAYDIIICDECH-STDATSILGIGTVLDQA 121 (136)
T ss_dssp GGGCCCSEEEEETTT-CCSHHHHHHHHHHHHHT
T ss_pred hhhhcCCEEEEeccc-ccCHHHHHHHHHHHHHH
Confidence 345678999999994 45777666665555544
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.94 E-value=0.0059 Score=59.13 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=26.8
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG 513 (695)
+-+.++||+||||||+++.|++-+. .+-+.+|+
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh--cceEEEec
Confidence 3489999999999999999999875 34455665
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.82 E-value=0.0065 Score=57.61 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.7
Q ss_pred eecCcEEEEEeecCCChhhHHHHHH
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLL 499 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~ 499 (695)
+++|+.+.|.||+||||||++.-++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999986554
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.81 E-value=0.0063 Score=56.54 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=21.5
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+.|+||.||||||+.+.|+.-|
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999877
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.0078 Score=57.13 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=28.5
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di 516 (695)
-.++++|||+|+||||.+-=|+..+.-..-+|.+=..|.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt 47 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 47 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccc
Confidence 357999999999999877777777765545565544444
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.78 E-value=0.0062 Score=56.97 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.1
Q ss_pred cEEEEEeecCCChhhHHHHHHh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~r 500 (695)
+.|+|+|++|+|||||++-|.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999876
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.78 E-value=0.0076 Score=57.19 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=25.0
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+|..|+|-|+-||||||++++|.....
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 799999999999999999999987765
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.78 E-value=0.0066 Score=55.64 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=24.8
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG 513 (695)
++.|+||.||||||+.+.|+--| |-+.|+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~~ 33 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLAT 33 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEec
Confidence 47789999999999999999887 5555543
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.74 E-value=0.0074 Score=61.26 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=36.6
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc-CCcchhHHH---HhhhccccCCceeeeeec
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP-LTDLDIRWL---REKIGFVGQEPQLLQMDI 542 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d-i~~i~~~~l---R~~I~~V~Qd~~LF~~TI 542 (695)
+.-+|||+||.|||||||++-|.+.+....-+|-+=-.| -+..+-..+ |-++.-.+.++..|-.+.
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~ 122 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPV 122 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEE
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccccccccccc
Confidence 356899999999999999999998886544344332222 222222111 112333445666665544
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.72 E-value=0.013 Score=56.19 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=25.8
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCce
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~ 508 (695)
..+.|+||+|+||||+++.++..+....+.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~~ 73 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKTTA 73 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCCC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcccCC
Confidence 478999999999999999999998755543
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.64 E-value=0.0085 Score=54.14 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=18.8
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
++++||++|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999997764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.60 E-value=0.012 Score=53.17 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=22.4
Q ss_pred EEEEEeecCCChhhHHHHHHh-----hhcCCCce
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR-----LYEPSDGQ 508 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r-----ly~p~~G~ 508 (695)
++++||.+|+|||||++-+.. -|.|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCccccc
Confidence 699999999999999987654 33455554
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.60 E-value=0.013 Score=53.90 Aligned_cols=32 Identities=34% Similarity=0.283 Sum_probs=24.6
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHH
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~ 499 (695)
.|+.--+.+ .|.-+.|.|+||+||||++--|.
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 566555544 48889999999999999885544
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.56 E-value=0.012 Score=57.89 Aligned_cols=87 Identities=24% Similarity=0.235 Sum_probs=58.7
Q ss_pred EEEEEeecCCChhhHHHHHHhhh--cCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCC-c
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY--EPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVK-N 556 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly--~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~-~ 556 (695)
.+||+|+.|||||||+..|+..- ....|+|. +|..+.|+.+++..+.+++.+.-..+-....+=|+. -+|.+.+ -
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~i-DtPGh~dF~ 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLL-DAPGYGDFV 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEE-ECCCSGGGH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeEEeecccccccccceeEE-ccCchhhhh
Confidence 48999999999999999986443 23457664 788889999999999998876655544444455653 1122222 1
Q ss_pred hhHHHHHHHhhH
Q 005467 557 EDIEWAAKQAYV 568 (695)
Q Consensus 557 eei~~A~~~a~l 568 (695)
.|+..|++.+..
T Consensus 82 ~e~~~al~~~D~ 93 (267)
T d2dy1a2 82 GEIRGALEAADA 93 (267)
T ss_dssp HHHHHHHHHCSE
T ss_pred hhhhhhhcccCc
Confidence 356666666653
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.53 E-value=0.012 Score=59.19 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=29.0
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di 516 (695)
|+.-+.++||+|||||.|+|.|++.+. .--+.+|+-++
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~s~~ 85 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKF 85 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHhhccc--cchhccccccc
Confidence 345567999999999999999999874 23566666544
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.50 E-value=0.0077 Score=57.60 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=21.9
Q ss_pred eecCcEEEEEeecCCChhhHHHHH
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLL 498 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL 498 (695)
+++|+.+.|.||+||||||+.--+
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHH
Confidence 899999999999999999998644
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.49 E-value=0.015 Score=53.45 Aligned_cols=33 Identities=30% Similarity=0.307 Sum_probs=27.0
Q ss_pred ceeeeeeeEeecCcEEEEEeecCCChhhHHHHHH
Q 005467 466 PILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (695)
Q Consensus 466 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~ 499 (695)
..++.--+.+ .|.-+.|.|+||+||||++--|.
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 3577767777 68999999999999999986554
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.48 E-value=0.0082 Score=54.16 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.2
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
++.=++++||.+|||||||++-|.+
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhc
Confidence 3344799999999999999998876
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.37 E-value=0.0089 Score=54.00 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.5
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
++++||++|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 389999999999999997654
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.35 E-value=0.0087 Score=56.39 Aligned_cols=22 Identities=50% Similarity=0.647 Sum_probs=19.5
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
++||+|..||||||.++.+..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 6899999999999999988643
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.33 E-value=0.0097 Score=56.57 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=25.5
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCcc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFP 515 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~d 515 (695)
+-.++++|||+|+||||.+--|+..+.-..-+|.+=..|
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~D 48 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 48 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeec
Confidence 344789999999999987655565554444454443333
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.31 E-value=0.01 Score=53.42 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=18.9
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
++++||++|+|||||++-+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 599999999999999987764
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=94.30 E-value=0.011 Score=53.38 Aligned_cols=29 Identities=34% Similarity=0.560 Sum_probs=23.0
Q ss_pred EEEEEeecCCChhhHHHHHHh-----hhcCCCce
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR-----LYEPSDGQ 508 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r-----ly~p~~G~ 508 (695)
+++++|.+|+|||||++-+.. -|.|+.|.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~ 39 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 39 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCCcccc
Confidence 689999999999999998753 34566553
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.24 E-value=0.01 Score=56.65 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.7
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHh
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
|++|+.+.|.||+||||||+..-++-
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999999877664
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.24 E-value=0.011 Score=55.76 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.5
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHh
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+.+.|.|++|+||||++.-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999876653
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.19 E-value=0.01 Score=53.22 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=18.1
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999986553
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.15 E-value=0.011 Score=56.75 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.+-+.||+|+||||+++++++.+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999764
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.14 E-value=0.012 Score=56.67 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=21.6
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+..+.|+||+|+|||||++-++.-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 46789999999999999998776543
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.13 E-value=0.011 Score=53.08 Aligned_cols=21 Identities=48% Similarity=0.744 Sum_probs=18.3
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999997653
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.09 E-value=0.0089 Score=54.08 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=18.0
Q ss_pred EEEEEeecCCChhhHHHHHH
Q 005467 480 VVAIVGLSGSGKSTFVNLLL 499 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~ 499 (695)
++++||++|+|||||++-+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~ 37 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLA 37 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999998764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.08 E-value=0.014 Score=55.26 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=25.6
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcCCCceEEE
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i 511 (695)
..++++|||+|+||||.+--|+..|.-..-+|.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~l 43 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 43 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 5678999999999998887777777644444444
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.03 E-value=0.015 Score=51.96 Aligned_cols=21 Identities=14% Similarity=0.407 Sum_probs=19.0
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
++++||.+|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998764
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.98 E-value=0.018 Score=52.04 Aligned_cols=30 Identities=27% Similarity=0.312 Sum_probs=20.8
Q ss_pred EEEEEeecCCChhhHHHHHHh-----hhcCCCceE
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR-----LYEPSDGQI 509 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r-----ly~p~~G~I 509 (695)
++++||++|+|||||++-+.+ -|+|+-|..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~ 42 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE 42 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCC----CCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccccceeee
Confidence 489999999999999987764 355555543
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.89 E-value=0.021 Score=54.46 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=28.1
Q ss_pred EEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCc
Q 005467 481 VAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTD 518 (695)
Q Consensus 481 vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~ 518 (695)
+-+.||+|+||||+++++++-+... -..+++.+...
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~~~--~~~~~~~~~~~ 73 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELGVN--LRVTSGPAIEK 73 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCC--EEEEETTTCCS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC--eEeccCCcccc
Confidence 5699999999999999999987533 34556666544
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.89 E-value=0.012 Score=53.35 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=18.6
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
++++||++|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.85 E-value=0.013 Score=53.58 Aligned_cols=21 Identities=38% Similarity=0.600 Sum_probs=18.6
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999987764
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.81 E-value=0.021 Score=60.27 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=27.9
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di 516 (695)
-+.++||||||||-|++.|+++.+.. -+..|+..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~f 85 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKF 85 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC--EEEeeccee
Confidence 68999999999999999999988642 455555443
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.011 Score=53.25 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+++++|.+|+|||||++-+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 58999999999999999877643
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.80 E-value=0.015 Score=52.22 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.6
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
++++||++|+|||||++-+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997754
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.78 E-value=0.019 Score=56.82 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=18.7
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
+|||-|++|||||||.+.|...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 6899999999999999876443
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.76 E-value=0.016 Score=53.28 Aligned_cols=27 Identities=37% Similarity=0.778 Sum_probs=22.9
Q ss_pred EEEEEeecCCChhhHHHHHHhhh---cCCCc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY---EPSDG 507 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly---~p~~G 507 (695)
++.++|.+|+|||||++-+ ++. .|+-|
T Consensus 4 KivllG~~~vGKTsll~r~-~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM-RIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH-HHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHH-hcCCCCCCeee
Confidence 6899999999999999988 343 58888
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.76 E-value=0.014 Score=52.36 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.7
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
++++||.+|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987754
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.76 E-value=0.018 Score=51.72 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.8
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|||.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.012 Score=53.81 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=18.0
Q ss_pred EEEEeecCCChhhHHHHHHh
Q 005467 481 VAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 481 vAIVG~SGSGKSTLl~LL~r 500 (695)
++|||++|+|||||++-+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 89999999999999987753
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.73 E-value=0.018 Score=59.88 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=27.2
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhcCCCce
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~ 508 (695)
.++-.+.+.||+||||||.+..+++..+....+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcCCCce
Confidence 457789999999999999999999977544444
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.70 E-value=0.015 Score=52.37 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=19.1
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998775
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.66 E-value=0.013 Score=55.63 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=20.7
Q ss_pred EEEEeecCCChhhHHHHHHhhh
Q 005467 481 VAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 481 vAIVG~SGSGKSTLl~LL~rly 502 (695)
+-|.||+|+||||+++.+++-.
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7899999999999999999876
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.66 E-value=0.017 Score=51.84 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.4
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997653
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.65 E-value=0.024 Score=51.14 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=18.6
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
++.+||.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999997764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.61 E-value=0.017 Score=52.26 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++.++|.+|+|||||++.+.+-.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 58999999999999999887644
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.53 E-value=0.016 Score=52.52 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.3
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
++++||++|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 489999999999999987653
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.53 E-value=0.015 Score=55.11 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.4
Q ss_pred EEEEeecCCChhhHHHHHHhhh
Q 005467 481 VAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 481 vAIVG~SGSGKSTLl~LL~rly 502 (695)
+.+.||+|+||||+++.+++-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999864
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.53 E-value=0.016 Score=53.77 Aligned_cols=24 Identities=38% Similarity=0.660 Sum_probs=21.5
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.|+|-|.-||||||++++|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999997764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.41 E-value=0.018 Score=51.46 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=18.3
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999987653
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.36 E-value=0.013 Score=53.32 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=18.3
Q ss_pred cEEEEEeecCCChhhHHHHHH
Q 005467 479 EVVAIVGLSGSGKSTFVNLLL 499 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~ 499 (695)
=+++++|++|+|||||++-+.
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999998763
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.34 E-value=0.018 Score=57.04 Aligned_cols=99 Identities=8% Similarity=0.065 Sum_probs=56.8
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCC-ceEEE-cCccCCcchhHHHHhhhccccCCceeeeeecccccc
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSD-GQIYI-DGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM 547 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~-G~I~i-dG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~ 547 (695)
|.=+.|-+|++.+|+|++|+|||||+.-+.+--.-+. +.+.+ ...+ + ..++.++....+ ...++..|-
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~~~~~~v~~~~~ig--e-r~~ev~~~~~~~--~~~vv~~t~----- 104 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID--E-RPEEVTEMQRLV--KGEVVASTF----- 104 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHHHHCTTSEEEEEEEE--E-CHHHHHHHHHHC--SSEEEEEET-----
T ss_pred eecccccCCCeeeEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEeec--e-eHHHHHhHHhhc--ceEEEeccC-----
Confidence 4456789999999999999999999999998654332 22222 1111 1 122333332222 222222221
Q ss_pred ccCCcCCCchhHHHHHHHhhHhHhHhcCCCCcccccc
Q 005467 548 YGCPKDVKNEDIEWAAKQAYVHEFILSLPCGYETLVD 584 (695)
Q Consensus 548 ~g~~~~~~~eei~~A~~~a~l~~fI~~LP~G~dT~vg 584 (695)
.+....++..+.-..-+.|+... +|+|..+=
T Consensus 105 ----d~~~~~r~~~~~~a~~iAEyfrd--~G~dVLli 135 (289)
T d1xpua3 105 ----DEPASRHVQVAEMVIEKAKRLVE--HKKDVIIL 135 (289)
T ss_dssp ----TSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEE
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHH--hccCceee
Confidence 12233455555556666777775 68887763
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.17 E-value=0.021 Score=51.74 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.0
Q ss_pred cEEEEEeecCCChhhHHHHHHh
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~r 500 (695)
.++.++|.+|+|||||++-+.+
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999977664
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.021 Score=51.19 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=18.5
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|||.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999987664
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.08 E-value=0.023 Score=51.43 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.7
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|||.+|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999987664
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.05 E-value=0.03 Score=50.96 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=18.1
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
++.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999985543
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.05 E-value=0.021 Score=52.13 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=18.7
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++|+|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999987653
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.01 E-value=0.036 Score=50.30 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=27.0
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEE
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~ 510 (695)
++.+||.+|+|||||++-+..-.-|+.|-..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~~ 34 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIVE 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEEE
Confidence 6899999999999999988888888888543
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.99 E-value=0.023 Score=51.21 Aligned_cols=19 Identities=26% Similarity=0.660 Sum_probs=17.7
Q ss_pred EEEEeecCCChhhHHHHHH
Q 005467 481 VAIVGLSGSGKSTFVNLLL 499 (695)
Q Consensus 481 vAIVG~SGSGKSTLl~LL~ 499 (695)
++++|.+|+|||||++-+.
T Consensus 8 I~lvG~~~vGKTsll~~~~ 26 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFI 26 (174)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 9999999999999999765
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.98 E-value=0.035 Score=50.57 Aligned_cols=32 Identities=34% Similarity=0.245 Sum_probs=23.6
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHH
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~ 499 (695)
.|+.--+. -.|.-+.|.|+||+||||++-.|.
T Consensus 5 ~~H~~~v~-~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 5 SLHGVLVD-VYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEESEEEE-ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHH
Confidence 45554444 458899999999999999884443
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.96 E-value=0.023 Score=52.43 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=18.1
Q ss_pred EEEEeecCCChhhHHHHHHh
Q 005467 481 VAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 481 vAIVG~SGSGKSTLl~LL~r 500 (695)
++|+|++|+|||||++-+..
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 89999999999999997664
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.95 E-value=0.03 Score=50.44 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=27.7
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcC
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
..+||.++++.|+=||||||+++-+++-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 4579999999999999999999999988854
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.76 E-value=0.025 Score=50.84 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=18.3
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
++++||.+|+|||||++-+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999996553
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.62 E-value=0.017 Score=52.30 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=9.3
Q ss_pred EEEEEeecCCChhhHHHHHH
Q 005467 480 VVAIVGLSGSGKSTFVNLLL 499 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~ 499 (695)
++++||.+|+|||||++-++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFS 27 (173)
T ss_dssp EEEEECCCCC----------
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 48999999999999998554
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.60 E-value=0.026 Score=51.11 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=18.9
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|.+|+|||||++-+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997765
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.56 E-value=0.019 Score=51.80 Aligned_cols=20 Identities=45% Similarity=0.707 Sum_probs=17.6
Q ss_pred EEEEEeecCCChhhHHHHHH
Q 005467 480 VVAIVGLSGSGKSTFVNLLL 499 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~ 499 (695)
+++++|++|+|||||++-+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~ 24 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHL 24 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999997653
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.54 E-value=0.027 Score=50.57 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.8
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
++++||.+|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999988773
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.54 E-value=0.025 Score=53.43 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEeecCCChhhHHHHHHhhh
Q 005467 481 VAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 481 vAIVG~SGSGKSTLl~LL~rly 502 (695)
+-+.||+|+||||+++++++-.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 6799999999999999999865
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.49 E-value=0.028 Score=53.55 Aligned_cols=30 Identities=20% Similarity=0.465 Sum_probs=24.0
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCceEEEc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYID 512 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~id 512 (695)
.++||.|+-||||||+++.|..-| |-..+|
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~ 31 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ 31 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC----CCeEEc
Confidence 479999999999999999996543 545554
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.35 E-value=0.024 Score=51.08 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=18.6
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
++.++|++|+|||||++-+.+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999997653
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.35 E-value=0.029 Score=56.60 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=22.6
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.-+++|.||.|+|||||+.-|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 5579999999999999999999865
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.28 E-value=0.031 Score=50.20 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.2
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|++|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 499999999999999996543
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.28 E-value=0.033 Score=50.91 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=17.8
Q ss_pred EEEEEeecCCChhhHHHHHH
Q 005467 480 VVAIVGLSGSGKSTFVNLLL 499 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~ 499 (695)
+++|+|.+|+|||||++-+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 49999999999999997654
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.02 E-value=0.033 Score=52.95 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.8
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
++||+|..+||||||++.|++-.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhhc
Confidence 49999999999999999998754
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.92 E-value=0.051 Score=54.47 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=28.6
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPL 516 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di 516 (695)
|...+.++||||+|||.|++.|++.+. .--|.+|.-++
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~--~~~i~~d~s~~ 88 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG--IELLRFDMSEY 88 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT--CEEEEEEGGGC
T ss_pred CceEEEEECCCcchhHHHHHHHHhhcc--CCeeEeccccc
Confidence 344578999999999999999999974 23555654433
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.90 E-value=0.044 Score=51.79 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=28.7
Q ss_pred cEEEEEeecCCChhhHHHHH-HhhhcCCCce----EEEcCccCCcc
Q 005467 479 EVVAIVGLSGSGKSTFVNLL-LRLYEPSDGQ----IYIDGFPLTDL 519 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL-~rly~p~~G~----I~idG~di~~i 519 (695)
-++.++|.+|+|||||++-+ .+-+.|+-|- +.+++..+.-+
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG~~~~~~~~~~~~~~~~ 52 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKVNFHMF 52 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCSCEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCcCCCCCeEEEEEEECcEEEEEE
Confidence 47899999999999999876 4555677773 23445444433
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.80 E-value=0.034 Score=52.31 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.3
Q ss_pred EEEEeecCCChhhHHHHHHhhh
Q 005467 481 VAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 481 vAIVG~SGSGKSTLl~LL~rly 502 (695)
+-+.||+|+||||+++++++-+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6799999999999999999864
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.78 E-value=0.034 Score=54.81 Aligned_cols=25 Identities=48% Similarity=0.464 Sum_probs=22.1
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
=-+|+|+||.++|||||+|.|.|-.
T Consensus 32 v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 32 MVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEEECCCCCCHHHHHHHHcCCC
Confidence 3589999999999999999999854
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=91.77 E-value=0.037 Score=47.14 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=25.9
Q ss_pred eecCcEEEEEeecCCChhhHH-HHHHhhhcCCCceEEE
Q 005467 475 IEANEVVAIVGLSGSGKSTFV-NLLLRLYEPSDGQIYI 511 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl-~LL~rly~p~~G~I~i 511 (695)
+++|+.+.|++|+|||||+.+ ..+..........+.+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli 41 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLV 41 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEE
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeee
Confidence 468999999999999999655 4445555444444444
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.75 E-value=0.042 Score=53.33 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=21.1
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
-+.+.||+|||||++++.+++..
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 38899999999999999999965
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.74 E-value=0.039 Score=49.33 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=18.4
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
++++||.+|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999987653
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.54 E-value=0.05 Score=56.41 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=27.1
Q ss_pred cEEEEEeecCCChhhHHH-HHHhhhcCCCceEEEcCc
Q 005467 479 EVVAIVGLSGSGKSTFVN-LLLRLYEPSDGQIYIDGF 514 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~-LL~rly~p~~G~I~idG~ 514 (695)
..+.|+|+||||||++++ ++...+....+-|.+|.+
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~k 87 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 87 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 469999999999999985 566666655566666643
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.46 E-value=0.047 Score=51.76 Aligned_cols=25 Identities=44% Similarity=0.611 Sum_probs=22.6
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhc
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+.++|=|+-||||||++++|..-+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999998764
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.38 E-value=0.047 Score=50.05 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=17.6
Q ss_pred EEEEEeecCCChhhHHHHHH
Q 005467 480 VVAIVGLSGSGKSTFVNLLL 499 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~ 499 (695)
+++++|.+|+|||||++-+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 59999999999999987654
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.37 E-value=0.076 Score=52.02 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=33.8
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHhh-hcCCCceEEEcCccC
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRL-YEPSDGQIYIDGFPL 516 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rl-y~p~~G~I~idG~di 516 (695)
|.=+.+-+|++++|.|++|+|||||+.-+++= -.-+.+-+.+-+..-
T Consensus 60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~~iGe 107 (276)
T d2jdid3 60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE 107 (276)
T ss_dssp HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEEEESC
T ss_pred eeeccccCCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEEEecc
Confidence 45578999999999999999999997777664 333344444444433
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=91.18 E-value=0.045 Score=55.98 Aligned_cols=40 Identities=25% Similarity=0.232 Sum_probs=32.9
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEE-EcCccC
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY-IDGFPL 516 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~-idG~di 516 (695)
.+|++..+.++||.|+||||+++.|+++.. |.+. +|+-+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~ 190 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLD 190 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTT
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEECcch
Confidence 457889999999999999999999999995 5554 565443
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.10 E-value=0.05 Score=49.42 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=18.5
Q ss_pred EEEEEeecCCChhhHHHHHHh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLR 500 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~r 500 (695)
+++++|.+|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999996554
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.08 E-value=0.052 Score=53.35 Aligned_cols=125 Identities=17% Similarity=0.173 Sum_probs=59.7
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhc--CCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeecccccc--ccCCcCC
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYE--PSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIM--YGCPKDV 554 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~--p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~--~g~~~~~ 554 (695)
..+||+|..|||||||+..|+-.-- ...|++. +|..+.|+.+++..+.+++-..-.++-...-+=||. -|. .+-
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~-~dF 84 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGH-VDF 84 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCCCCCCSEEEEEETTEEEEEECCCSS-SSC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcCcccccccee-cCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCch-hhh
Confidence 3589999999999999998853322 2346664 677788888888888888865544433334444663 231 222
Q ss_pred CchhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhh--cCCcEEEEeccccccCccc
Q 005467 555 KNEDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAIL--RDPAILLLDEATSALDSES 622 (695)
Q Consensus 555 ~~eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll--~~p~ILILDEaTSaLD~~t 622 (695)
. .++..+++.+...=.+-+-. +|=|-|=..+-|..- +=|.|+++ +-||.+.
T Consensus 85 ~-~e~~~~l~~~D~avlVvda~------------~Gv~~~T~~~w~~a~~~~lP~i~fI----NKmDr~~ 137 (276)
T d2bv3a2 85 T-IEVERSMRVLDGAIVVFDSS------------QGVEPQSETVWRQAEKYKVPRIAFA----NKMDKTG 137 (276)
T ss_dssp S-TTHHHHHHHCCEEEEEEETT------------TSSCHHHHHHHHHHHTTTCCEEEEE----ECTTSTT
T ss_pred H-HHHHHHHHhhhheEEecccc------------CCcchhHHHHHHHHHHcCCCEEEEE----ecccccc
Confidence 2 46667777665433333322 344545444434333 34777765 4455544
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.75 E-value=0.052 Score=53.24 Aligned_cols=33 Identities=39% Similarity=0.556 Sum_probs=26.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhh-----------cCCCceEEEc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY-----------EPSDGQIYID 512 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly-----------~p~~G~I~id 512 (695)
++||||..-+|||||++.|.+-- +|+-|.|.+.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~ 47 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP 47 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECC
T ss_pred eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecc
Confidence 69999999999999999999542 4555666554
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.71 E-value=0.054 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+++||..+|||||+++.|+|.=
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999965
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.49 E-value=0.039 Score=51.70 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.2
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+||+|..++|||||++-|+...
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~~ 27 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYVA 27 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHh
Confidence 48999999999999999997543
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.25 E-value=0.039 Score=53.04 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=20.5
Q ss_pred EEEEEeecCCChhhHHHHHHhhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly 502 (695)
.+.++||+|+||||+++.+++.+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 46678999999999999999886
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=90.09 E-value=0.086 Score=51.70 Aligned_cols=44 Identities=9% Similarity=0.051 Sum_probs=33.0
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcC
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDG 513 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG 513 (695)
|.=+.|-+|++++|+|++|+|||+|+..+..-..-+...+-+-+
T Consensus 59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~~~ 102 (276)
T d1fx0a3 59 DAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVA 102 (276)
T ss_dssp TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEE
T ss_pred eccccccCCceEeeccCCCCChHHHHHHHHhhhcccCceeeeee
Confidence 44568899999999999999999999876655544444443433
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=89.89 E-value=0.057 Score=54.18 Aligned_cols=27 Identities=37% Similarity=0.358 Sum_probs=24.7
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhcC
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYEP 504 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~p 504 (695)
|.-+.|+||.|+||||+++.+.++.+|
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCeEEEECCCCccHHHHHHHHHHhCCC
Confidence 456899999999999999999999976
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.83 E-value=0.066 Score=53.32 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
.|||||..-+|||||+|.|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999875
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.58 E-value=0.078 Score=51.89 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.2
Q ss_pred CcEEEEEeecCCChhhHHHHHHhh
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rl 501 (695)
..+++|+|..|.|||||++-+.+-
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999988754
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=89.56 E-value=0.081 Score=52.30 Aligned_cols=33 Identities=27% Similarity=0.562 Sum_probs=26.7
Q ss_pred EEEEEeecCCChhhHHHHHHhhh------------cCCCceEEEc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY------------EPSDGQIYID 512 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly------------~p~~G~I~id 512 (695)
++||||...+|||||++.|++-- +|+-|.+.+.
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~ 56 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVP 56 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEecc
Confidence 59999999999999999999752 4556766554
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=89.53 E-value=0.11 Score=51.86 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=29.7
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhh-cCCCceEEEcCccCC
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLY-EPSDGQIYIDGFPLT 517 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly-~p~~G~I~idG~di~ 517 (695)
|.-.+.++||||+|||.+++.|+... .....-+.+|..+..
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~ 93 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 93 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred CceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence 33457899999999999999999976 333345566655443
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=89.21 E-value=0.13 Score=52.55 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=29.1
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~ 517 (695)
++|+- +..+||||+|||-|++.|+.+++ ..-|++|-..+.
T Consensus 66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~~--~~~ir~D~s~~~ 105 (364)
T d1um8a_ 66 LSKSN-ILLIGPTGSGKTLMAQTLAKHLD--IPIAISDATSLT 105 (364)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEGGGCC
T ss_pred CCCcc-eeeeCCCCccHHHHHHHHHhhcc--cceeehhhhhcc
Confidence 34444 67789999999999999999873 345666654443
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=89.18 E-value=0.19 Score=50.17 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=33.5
Q ss_pred eeeeeeeEeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCC
Q 005467 467 ILNHVCLTIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLT 517 (695)
Q Consensus 467 vL~~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~ 517 (695)
+.+-+-...++| .+.++||+|+|||.|++.|++-.--...-+.++|-++-
T Consensus 113 ~~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~ 162 (321)
T d1w44a_ 113 VAEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPL 162 (321)
T ss_dssp EEEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSS
T ss_pred HHHHhhcccCCc-eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhh
Confidence 344444555655 45668999999999999999876422234566665543
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.73 E-value=0.19 Score=48.91 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
-+.+|||+|+|||+++.-|.+...
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999998764
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=88.61 E-value=0.089 Score=48.37 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.2
Q ss_pred EEEEeecCCChhhHHHHHHhhh
Q 005467 481 VAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 481 vAIVG~SGSGKSTLl~LL~rly 502 (695)
+||+|...+|||||++.|.|.+
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 8999999999999999998754
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.44 E-value=0.11 Score=46.95 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=22.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhh---cCCCc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLY---EPSDG 507 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly---~p~~G 507 (695)
++.++|.+|+|||||++-+..-. .|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 58999999999999999886554 34445
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.67 E-value=0.12 Score=48.97 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=23.7
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEE
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIY 510 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~ 510 (695)
.|+-+.|++|+|||||+..-+..-.+....++++
T Consensus 57 ~g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvl 90 (237)
T d1gkub1 57 RKESFAATAPTGVGKTSFGLAMSLFLALKGKRCY 90 (237)
T ss_dssp TTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEE
T ss_pred CCCCEEEEecCCChHHHHHHHHHHHHHHhcCeEE
Confidence 5888999999999999876555444433334443
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=87.64 E-value=0.17 Score=50.86 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=26.3
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCCceEEE
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i 511 (695)
+|.|=|+-||||||+++.|..-+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 57889999999999999999988765544444
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.51 E-value=0.13 Score=48.81 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.0
Q ss_pred EEEEEeecCCChhhHHHHHHhhhcCCC
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYEPSD 506 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~p~~ 506 (695)
.+.|.||+|+||||+++++++......
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~~~~ 62 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLNCET 62 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHCTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcCcc
Confidence 478899999999999999998875443
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.24 E-value=0.16 Score=43.22 Aligned_cols=41 Identities=5% Similarity=-0.046 Sum_probs=30.3
Q ss_pred ecCcEEEEEeecCCChhhHHHHH-HhhhcCCCc-eEE-EcCccC
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLL-LRLYEPSDG-QIY-IDGFPL 516 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL-~rly~p~~G-~I~-idG~di 516 (695)
+.|=++-+.|-||||||||.+.| ..|.+-+.| .|. +||.++
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni 47 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNK 47 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTC
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCH
Confidence 35778999999999999999877 677775544 344 566543
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=86.74 E-value=0.19 Score=50.45 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=26.8
Q ss_pred cEEEEEeecCCChhhHHHHHHhhhcCCCceEEE
Q 005467 479 EVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYI 511 (695)
Q Consensus 479 e~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~i 511 (695)
-+|+|=|+-||||||+++.|...+......|.+
T Consensus 6 lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~ 38 (331)
T d1osna_ 6 LRIYLDGAYGIGKTTAAEEFLHHFAITPNRILL 38 (331)
T ss_dssp EEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEE
Confidence 358999999999999999999988755445544
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.89 E-value=0.16 Score=47.64 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.5
Q ss_pred EEEEeecCCChhhHHHHHHhhh
Q 005467 481 VAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 481 vAIVG~SGSGKSTLl~LL~rly 502 (695)
+-|.||+|||||-|++.+..-+
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6899999999999999887655
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.32 E-value=0.15 Score=50.04 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=25.8
Q ss_pred eeeeEeecCcEEEEEeecCCChhhHHHHHH
Q 005467 470 HVCLTIEANEVVAIVGLSGSGKSTFVNLLL 499 (695)
Q Consensus 470 ~isl~I~~Ge~vAIVG~SGSGKSTLl~LL~ 499 (695)
|.-+.+-+|++++|+|++|+|||||+.-+.
T Consensus 60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 455789999999999999999999976554
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=85.32 E-value=0.15 Score=49.62 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=28.1
Q ss_pred eecCcEEEEEeecCCChhhH--HHHHHhhhcCCCceEEEcCccCCcc
Q 005467 475 IEANEVVAIVGLSGSGKSTF--VNLLLRLYEPSDGQIYIDGFPLTDL 519 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTL--l~LL~rly~p~~G~I~idG~di~~i 519 (695)
+++|+.+.+.+|+|||||+. ..++....+ ..+++++= .|.+.+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~-~~~~~lvi-~Ptr~L 50 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK-RGLRTLIL-APTRVV 50 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-HTCCEEEE-ESSHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHh-cCCEEEEE-ccHHHH
Confidence 56899999999999999973 355544443 24445442 244444
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.05 E-value=0.21 Score=46.97 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.6
Q ss_pred EEEEEeecCCChhhHHHHHHhh
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRL 501 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rl 501 (695)
++.|.|.=|||||||++-+++-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 5789999999999999988874
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=85.05 E-value=0.28 Score=47.67 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=28.2
Q ss_pred eecCcEEEEEeecCCChhhHHHHHHhhhcCCCce
Q 005467 475 IEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQ 508 (695)
Q Consensus 475 I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~ 508 (695)
.++-.++.+.||.++||||++++|+.++ +.-|.
T Consensus 101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~ 133 (267)
T d1u0ja_ 101 FGKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGC 133 (267)
T ss_dssp STTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEE
T ss_pred CCccEEEEEEcCCCCCHHHHHHHHHHHh-cchhh
Confidence 4677789999999999999999999998 55443
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.99 E-value=0.11 Score=47.91 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=17.4
Q ss_pred ecCcEEEEEeecCCChhhHHH
Q 005467 476 EANEVVAIVGLSGSGKSTFVN 496 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~ 496 (695)
..|+-+.+++|+|||||++.-
T Consensus 38 ~~~~~~il~apTGsGKT~~a~ 58 (202)
T d2p6ra3 38 FSGKNLLLAMPTAAGKTLLAE 58 (202)
T ss_dssp TTCSCEEEECSSHHHHHHHHH
T ss_pred HcCCCEEEEcCCCCchhHHHH
Confidence 357778899999999998753
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.80 E-value=0.24 Score=45.84 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.0
Q ss_pred EEEEEeecCCChhhHHHHHHhhhc
Q 005467 480 VVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 480 ~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
-+.+|||+|.|||+++.-|++-..
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHHH
Confidence 468999999999999999987663
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=84.46 E-value=0.25 Score=45.86 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=29.1
Q ss_pred EeecCcEEEEEeecCCChhhHHHHHHhhhcCCCceE
Q 005467 474 TIEANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQI 509 (695)
Q Consensus 474 ~I~~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I 509 (695)
.+||-.++.|+||.++|||+++..|+++. .|.+
T Consensus 49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l---~G~v 81 (205)
T d1tuea_ 49 GTPKKNCLVFCGPANTGKSYFGMSFIHFI---QGAV 81 (205)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHH---TCEE
T ss_pred CCCCceEEEEECCCCccHHHHHHHHHHHh---CCEE
Confidence 36888999999999999999999999997 3665
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=81.78 E-value=0.3 Score=44.98 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=22.3
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhh
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLY 502 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly 502 (695)
+|.=.+||+|.-.+|||||++-|++..
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhh
Confidence 344458999999999999999998644
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=81.65 E-value=0.33 Score=53.52 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=24.9
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+..+.|-|-|+||||||+-.|.++++.-
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 111 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIMQFLT 111 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999999873
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=81.12 E-value=0.34 Score=53.66 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=25.3
Q ss_pred ecCcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 476 EANEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 476 ~~Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
+..+.+.|-|+||||||+-.|.++++.-
T Consensus 123 ~~nQsIiisGeSGaGKTe~~k~il~yL~ 150 (712)
T d1d0xa2 123 RQNQSLLITGESGAGKTENTKKVIQYLA 150 (712)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999884
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=80.10 E-value=0.26 Score=49.37 Aligned_cols=26 Identities=38% Similarity=0.328 Sum_probs=20.7
Q ss_pred CcEEEEEeecCCChhhHHHHHHhhhc
Q 005467 478 NEVVAIVGLSGSGKSTFVNLLLRLYE 503 (695)
Q Consensus 478 Ge~vAIVG~SGSGKSTLl~LL~rly~ 503 (695)
.-+|+|=|+-||||||+++.|...+.
T Consensus 4 ~lrI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 4 LLRVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ceEEEEECCcCCCHHHHHHHHHHHhC
Confidence 34589999999999999999987764
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.04 E-value=0.85 Score=41.86 Aligned_cols=109 Identities=12% Similarity=0.119 Sum_probs=65.4
Q ss_pred cCcEEEEEeecCCChhhHHHHHHhhhcCCCceEEEcCccCCcchhHHHHhhhccccCCceeeeeeccccccccCCcCCCc
Q 005467 477 ANEVVAIVGLSGSGKSTFVNLLLRLYEPSDGQIYIDGFPLTDLDIRWLREKIGFVGQEPQLLQMDIKSNIMYGCPKDVKN 556 (695)
Q Consensus 477 ~Ge~vAIVG~SGSGKSTLl~LL~rly~p~~G~I~idG~di~~i~~~~lR~~I~~V~Qd~~LF~~TI~eNI~~g~~~~~~~ 556 (695)
.+..+.+.||+|+||||+++.+.+...-. +- ++|-++.-. .| | ..+.-
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~---------~~----------------~h~D~~~i~-~~----~--~~I~I 61 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVEKF---------PP----------------KASDVLEID-PE----G--ENIGI 61 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHHTS---------CC----------------CTTTEEEEC-CS----S--SCBCH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhcc---------cc----------------CCCCEEEEe-CC----c--CCCCH
Confidence 35578999999999999999999865211 00 111111000 00 1 13456
Q ss_pred hhHHHHHHHhhHhHhHhcCCCCccccccccccCCccchhHHHHHHhhcCCcEEEEeccccccCcccchhhhhHHHhhhcc
Q 005467 557 EDIEWAAKQAYVHEFILSLPCGYETLVDDDLLSGGQKQRIAIARAILRDPAILLLDEATSALDSESEHYVKGVLHALRND 636 (695)
Q Consensus 557 eei~~A~~~a~l~~fI~~LP~G~dT~vge~~LSGGQkQRIaIARAll~~p~ILILDEaTSaLD~~tE~~I~~~L~~~~~~ 636 (695)
|+|++..+.+....+. | +.+|+|+||+= .|..++...+.+.|++-
T Consensus 62 d~IR~i~~~~~~~~~~-----~--------------------------~~KviIId~ad-~l~~~aqNaLLK~LEEP--- 106 (198)
T d2gnoa2 62 DDIRTIKDFLNYSPEL-----Y--------------------------TRKYVIVHDCE-RMTQQAANAFLKALEEP--- 106 (198)
T ss_dssp HHHHHHHHHHTSCCSS-----S--------------------------SSEEEEETTGG-GBCHHHHHHTHHHHHSC---
T ss_pred HHHHHHHHHHhhCccc-----C--------------------------CCEEEEEeCcc-ccchhhhhHHHHHHhCC---
Confidence 7888888888766542 2 35899999973 34444444555555442
Q ss_pred ccCcceEEEEeeecccc
Q 005467 637 CKTKRTVIVIAHRLSTI 653 (695)
Q Consensus 637 ~~~~~TvIiIaHrlsti 653 (695)
..+...|++|++.+.+
T Consensus 107 -p~~t~fiLit~~~~~l 122 (198)
T d2gnoa2 107 -PEYAVIVLNTRRWHYL 122 (198)
T ss_dssp -CTTEEEEEEESCGGGS
T ss_pred -CCCceeeeccCChhhC
Confidence 2345677888887653
|