Citrus Sinensis ID: 005475

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-----
Protein Sequence
MERFMTEPSIEDQDHINQDSKVKNFKDPLYNFDSKNSDLSLADSFLDFDTIKELFEDYSPNLDRIGLEKIEFGVLEKSLKMNQEENFHFGNLVSDGSDCVVKVEEALVGGKEKNLSCCIEEDMGKVSLVDAKSGIASDGDGSKKVDLVGNMGSFPADKDGAKSGIISDEKESESESESENESSASSSSSSSSSSDNDEEEDEDEELKKEEAKKEVERGLGELGELEEGEIEDVDREEMTGGIDDDEDDEEDEVEMISVVDVDIDGGDEIDGCAREGPIRSKNELQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFVQDFANHVLDDKNLYKKGYDASGENDEELSDEAEFSDDEKEAEYKRRQKMEKRGMDDQKPGNRKNNRKKVKNKDGMWRNGRPSAPQMDGVGQPLPNQNQHPVSHVPASLDQGNCSTSSIGQGFVGGTGLVPQLQQMVQNTSFSTSPSAVWTDRIPPQQPQGTFFPNVFPTNGLPWPSQNYQQPPYQPMMNCGLFLQQSSQMSLPNVGLPGGPSNFFAGPTYAPWQGLLGQNGLNQTIGQGLPQQPACPSVNASQGILPPNGLHVKQNNLQQAAVLPGSIEAPQQFNMGASSSRGRKPYHRGGGRFSGGRVRHQSR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHcccccccEEEccccccccccccccccccHHHHHHHHcccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEcEEEEEEEccEEEEEccccccccccccEEEEccccEEcEEEEEEEccccccEEEEEcccccccccccccccEEEEccccccccccHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEccccccHHHHcHHHHHcccccccccHcccccccccccccccHHHHHHHHcccccccccccccHHccccEEEEEEEcccccEEEccEEEccccEEEEEEEEEccccccccccEHHHHHcEEEEEccccEEEcccccccEEEccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccEEEcccccEEEcEEEEHHEccEEEEEEccccccccccEEEEEccccEEEEEEEHccccccccEEEEEEccHHHHHcccccccEEEEEcccccEEEcHHHHHcccccccccccccccccHcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccc
Coil and Loop (DISEMBL)
merfmtepsiedqdhinqdskvknfkdplynfdsknsdlsladsfldFDTIKELFEdyspnldriglekieFGVLEKSLKmnqeenfhfgnlvsdgsdcVVKVEEALvggkeknlsccieedmgkvslvdaksgiasdgdgskkvdlvgnmgsfpadkdgaksgiisdekesesesesenessassssssssssdndeeedeDEELKKEEAKKEVERGlgelgeleegeiedvdreemtggidddeddeedEVEMISVVdvdidggdeidgcaregpirsknelqvlplvpqvnvvlqphhqmlpVGVVLSVRGVQVIVEGaekhnplnegsilwitesrvplglideifgpvknpyyvvrynseneipaeirvgTSISFVQDFAnhvlddknlykkgydasgendeelsdeaefsddEKEAEYKRRQKMEkrgmddqkpgnrknnrkkvknkdgmwrngrpsapqmdgvgqplpnqnqhpvshvpasldqgncstssigqgfvggtglvpqlqqmvqntsfstspsavwtdrippqqpqgtffpnvfptnglpwpsqnyqqppyqpmmncglflqqssqmslpnvglpggpsnffagptyapwqgllgqnglnqtigqglpqqpacpsvnasqgilppnglhvkqNNLQqaavlpgsieapqqfnmgasssrgrkpyhrgggrfsggrvrhqsr
Flexible Loop (DISEMBL)
merfmtepsiedqdhinqdskvkNFKDPLYNFDSKNSDLSLADSFLDFDTIKELFEdyspnldriGLEKIEFGVLEKSLKMNQEENFHfgnlvsdgsdCVVKVEEAlvggkeknlsccIEEDMGKVSLVDAksgiasdgdgskKVDLVGNMgsfpadkdgaksgIISDekesesesesenessassssssssssdndeeededeelkkeeakkeverglgelgeleegeiedvdreemtggidddeddeedEVEMISvvdvdidggdEIDGCAREGPIRSKNELQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGaekhnplnegsilWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFVQDFANHVLDDKNLYKKGydasgendeelsdeaefsddekeAEYKRRQkmekrgmddqkpgnrknnrkkvknkdgmwrnGRPSAPQMDGVGQPLPNQNQHPVSHVPASLDQGNCSTSSIGQGFVGGTGLVPQLQQMVQNTSFSTSPSAVWTDRIPPQQPQGTFFPNVFPTNGLPWPSQNYQQPPYQPMMNCGLFLQQSSQMSLPNVGLPGGPSNFFAGPTYAPWQGLLGQNGLNQTIGQGLPQQPACPSVNASQGILPPNGLHVKQNNLQQAAVLPGSIEAPQQFNMgasssrgrkpyhrgggrfsggrvrhqsr
Low Complexity Region (SEG)
MERFMTEPSIEDQDHINQDSKVKNFKDPLYNFDSKNsdlsladsfldfdTIKELFEDYSPNLDRIGLEKIEFGVLEKSLKMNQEENFHFGNLVSDGSDCVVKVEEALVGGKEKNLSCCIEEDMGKVSLVDAKSGIASDGDGSKKVDLVGNMGSFPADKDGAKSGIIsdekesesesesenessassssssssssdndeeededeelkkeeakkeverglgelgeleegeiedvdreeMTGGidddeddeedevemisvvdvdidggdeidgCAREGPIRSKNElqvlplvpqvnvvlqpHHQMLPvgvvlsvrgvqvivEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFVQDFANHVLDDKNLYKKGYDASGENDEELSDEAEFSDDEKEAEYKRRQKMEKRGMDDQKPGnrknnrkkvknkDGMWRNGRPSAPQMDGVGQPLPNQNQHPVSHVPASLDQGNCSTSSIGQGFVGGTGLVPQLQQMVQNTSFSTSPSAVWTDRIPPQQPQGTFFPNVFPTNGLPWpsqnyqqppyqpmmnCGLFLQQSSQMSLPNVGLPGGPSNFFAGPTYAPWQGLLGQNGLNQTIGQGLPQQPACPSVNASQGILPPNGLHVKQNNLQQAAVLPGSIEAPQQFNMGASSSRGRKPYHrgggrfsggrvrHQSR
Disordered region (IsUnstruct)
*****************************Y*******DLSLADSFLDFDTIKELFEDYSPNLDRIGLEKIEFGVLEKSLKMNQEENFHFGNLVSDGSDCVVKVEEALVGGKEKNLSCCIEEDMGKVSLV********************************************************************************************************************************VVDVDIDGGDEIDGCAREGPIRSKNELQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFVQDFANHVLDDKNLYKK*******************************************************************************************************QGFVGGTGLVPQL****************W***********TFFPNVFPTNGLPWP********YQPMMNCGLFLQ***************PSNFFAGPTYAPWQGLLGQNGLNQTI******************************************************************************
Disordered Region (DISOPRED)
**RF*****************************SKNSDLSLADSFLDFDTIKELFEDYSPNLDRIGLEKIEFGVL***************************************************************************************************************************************************************************************************************ELQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFVQDFANHVLDDKNLYKKGYDASGENDEELSDEAEFSDD*************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
************QDHINQDSKVKNFKDPLYNFDSKNSDLSLADSFLDFDTIKELFEDYSPNLDRIGLEKIEFGVLEKSLKMNQEENFHFGNLVSDGSDCVVKVEEALVGGKEKNLSCCIEEDMGKVSLVDAKSGIASDGDGSKKVDLVGNMGSFPADKDGA*******************************************************RGLGELGELEEGEIEDVDREEMTGGIDDDEDDEEDEVEMISVVDVDIDGGDEIDGCAREGPIRSKNELQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFVQDFANHVLDDKNLYKKGYD***********************************************KKVKNKDGMWRNGRPSAPQMDGVGQPLPNQNQHPVSHVPASLDQGNCSTSSIGQGFVGGTGLVPQLQQMVQN**********WTDRIPPQQPQGTFFPNVFPTNGLPWPSQNYQQPPYQPMMNCGLFLQQSSQMSLPNVGLPGGPSNFFAGPTYAPWQGLLGQNGLNQTIGQGLPQQPACPSVNASQGILPPNGLHVKQNNLQQAAVLPGSIEAPQQFNMGASSSRGRKPYHRGGG************
Disordered Region (DISPRO)
**RFMTEPSIEDQDHINQDSKVKNFKDPLYNFDSKNSDLSLADSFLDFDTIKELFEDYSPNLDRIGLEKIEFGVLEKSLKMNQEENFHFGNLVSDGSDCVVKVEEALVGGKEKNLSCCIEEDMGKVSLVDAKSGIASDGDGSKKVDL************************************************************************************************************************************SKNELQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFVQDFANHVLDDKNLYKKGYD****NDEELSDEAEFSDDEKEAEYKRRQKM*******************************************************************************V***QQMVQNTSFSTSPSAVWTDRIPPQQPQGTFFPNVFPTNGLPWPSQNYQQPPYQPMMNCGLFLQQSSQMSLPNVGLPGGPSNFFAGPTYAPWQGLLGQNGLNQTIGQGLPQQPACPSVNASQGILPPNGLH****************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MERFMTEPSIEDQDHINQDSKVKNFKDPLYNFDSKNSDLSLADSFLDFDTIKELFEDYSPNLDRIGLEKIEFGVLEKSLKMNQEENFHFGNLVSDGSDCVVKVEEALVGGKEKNLSCCIEEDMGKVSLVDAKSGIASDGDGSKKVDLVGNMGSFPADKDGAKSGIISDEKESESESESENESSASSSSSSSSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEIEDVDREEMTGGIDDDEDDEEDEVEMISVVDVDIDGGDEIDGCAREGPIRSKNELQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFVQDFANHVLDDKNLYKKGYDASGENDEELSDEAEFSDDEKEAEYKRRQKMEKRGMDDQKPGNRKNNRKKVKNKDGMWRNGRPSAPQMDGVGQPLPNQNQHPVSHVPASLDQGNCSTSSIGQGFVGGTGLVPQLQQMVQNTSFSTSPSAVWTDRIPPQQPQGTFFPNVFPTNGLPWPSQNYQQPPYQPMMNCGLFLQQSSQMSLPNVGLPGGPSNFFAGPTYAPWQGLLGQNGLNQTIGQGLPQQPACPSVNASQGILPPNGLHVKQNNLQQAAVLPGSIEAPQQFNMGASSSRGRKPYHRGGGRFSGGRVRHQSR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	695	2.2.26 [Sep-21-2011]
Q96HR8	494	H/ACA ribonucleoprotein c	no	no	0.263	0.370	0.357	4e-21
Q52KK4	457	H/ACA ribonucleoprotein c	yes	no	0.225	0.343	0.369	4e-19
Q3UMQ8	489	H/ACA ribonucleoprotein c	yes	no	0.225	0.321	0.363	5e-19
O14360	516	H/ACA ribonucleoprotein c	yes	no	0.182	0.246	0.371	1e-12
P53919	492	H/ACA ribonucleoprotein c	yes	no	0.402	0.569	0.299	1e-12
A6ZRW0	492	H/ACA ribonucleoprotein c	N/A	no	0.402	0.569	0.299	2e-12

>sp|Q96HR8|NAF1_HUMAN H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Homo sapiens GN=NAF1 PE=1 SV=2

 Score =  103 bits (258), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 118/193 (61%), Gaps = 10/193 (5%)

Query: 256 ISVVDVDIDGGD--EIDGCAREGPIRSKNELQV--LPLVPQVNVVLQPHHQMLPVGVVLS 311
           IS+  V  DG D  +I+   +  P+++K+EL +  LP V ++ ++L    ++ P+G+V S
Sbjct: 147 ISLPPVLSDGDDDLQIEKENKNFPLKTKDELLLNELPSVEELTIILPEDIELKPLGMVSS 206

Query: 312 VRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE 371
           +    VI+E      P+NE ++++ ++ R   G I EIFGPV +P+YV+R+NS + I ++
Sbjct: 207 IIEQLVIIESMTNLPPVNEETVIFKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSDHIESK 265

Query: 372 -IRVGTSISF---VQDFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKR 426
            I++  ++ F   ++DF  ++  +K    KG DAS +ND+E   EA +FSDDEKE E K+
Sbjct: 266 GIKIKETMYFAPSMKDFTQYIFTEKLKQDKGSDASWKNDQEPPPEALDFSDDEKEKEAKQ 325

Query: 427 RQKMEKRGMDDQK 439
           R+K + +G    K
Sbjct: 326 RKKSQIQGRKKLK 338

RNA-binding protein required for the maturation of box H/ACA snoRNPs complex and ribosome biogenesis. During assembly of the H/ACA snoRNPs complex, it associates with the complex and disappears during maturation of the complex and is replaced by NOLA1/GAR1 to yield mature H/ACA snoRNPs complex. Probably competes with NOLA1/GAR1 for binding with DKC1/NOLA4.
Homo sapiens (taxid: 9606)

>sp|Q52KK4|NAF1_RAT H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Rattus norvegicus GN=Naf1 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 102/165 (61%), Gaps = 8/165 (4%)

Query: 277 PIRSKNELQV--LPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSIL 334
           P+++K+EL +  LP V ++ V L     + P+G V S+    VI+E      P+NE +++
Sbjct: 135 PLKTKDELLLNELPSVEELTVTLPEDIALKPLGKVSSIIEQLVIIESMTNIPPVNEDTVI 194

Query: 335 WITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQDFANHVLD 390
           + ++ R   G I EIFGPV +P+YV+R+NS   I ++ I++  ++ F   ++DF  ++  
Sbjct: 195 FKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSEHIESKGIKIKDTMYFAPSMKDFTQYIFT 253

Query: 391 DKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKRG 434
           +K    +G DAS +ND+E   EA +FSDDEKE E K+R+K + +G
Sbjct: 254 EKLKQDRGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQG 298

RNA-binding protein required for the maturation of box H/ACA snoRNPs complex and ribosome biogenesis. During assembly of the H/ACA snoRNPs complex, it associates with the complex and disappears during maturation of the complex and is replaced by NOLA1/GAR1 to yield mature H/ACA snoRNPs complex. Probably competes with NOLA1/GAR1 for binding with DKC1/NOLA4.

Rattus norvegicus (taxid: 10116)

>sp|Q3UMQ8|NAF1_MOUSE H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Mus musculus GN=Naf1 PE=1 SV=2

 Score = 96.7 bits (239), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 103/165 (62%), Gaps = 8/165 (4%)

Query: 277 PIRSKNELQV--LPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSIL 334
           P+++K+EL +  LP V ++ V+L     + P+G V S+    VI+E      P+NE +++
Sbjct: 163 PLKTKDELLLNELPSVEELTVILPEDIALKPLGKVSSIIEQLVIIESVTNIPPVNEDTVI 222

Query: 335 WITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQDFANHVLD 390
           + ++ R   G I EIFGPV +P+YV+R+NS + I ++ I++  ++ F   ++DF  ++  
Sbjct: 223 FKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKINDTMYFAPSMKDFTQYIFT 281

Query: 391 DKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKRG 434
           +K    +G DAS +ND+E   E  +FSDDEKE E K+R+K + +G
Sbjct: 282 EKLKQDRGSDASWKNDQEPPPEVLDFSDDEKEKEAKQRKKSQIQG 326

RNA-binding protein required for the maturation of box H/ACA snoRNPs complex and ribosome biogenesis. During assembly of the H/ACA snoRNPs complex, it associates with the complex and disappears during maturation of the complex and is replaced by NOLA1/GAR1 to yield mature H/ACA snoRNPs complex. Probably competes with NOLA1/GAR1 for binding with DKC1/NOLA4.

Mus musculus (taxid: 10090)

>sp|O14360|NAF1_SCHPO H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=naf1 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 76/132 (57%), Gaps = 5/132 (3%)

Query: 295 VVLQPHHQMLPVGVVLSVRGVQVIVEGA--EKHNPLNEGSILWITESRVPLGLIDEIFGP 352
           +VLQP+  + P+G ++ V   +V+V+    ++    +E ++L   E R  +G I E FGP
Sbjct: 242 IVLQPNSLIEPLGKIIQVLKREVVVKSDIDDEKIVFDEKTVLCF-EDRSIIGYIHETFGP 300

Query: 353 VKNPYYVVRYNSENEIPA-EIRVGTSISFVQDFANHVLDDKNLYKKGYDASGENDEELS- 410
           V +PYY+VR+++E E  A    +G  + +V   AN +  +   Y KG DAS   DEE++ 
Sbjct: 301 VSSPYYIVRFSTEEECSAINACMGRPVFYVPTMANKIDPEPLKYIKGSDASNVYDEEINP 360

Query: 411 DEAEFSDDEKEA 422
            E EFSDDE E 
Sbjct: 361 SEQEFSDDEAEV 372

RNA-binding protein required for the maturation of box H/ACA snoRNPs complex and ribosome biogenesis. During assembly of the H/ACA snoRNPs complex, it associates with the complex and disappears during maturation of the complex and is replaced by GAR1 to yield mature H/ACA snoRNPs complex.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P53919|NAF1_YEAST H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAF1 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 155/314 (49%), Gaps = 34/314 (10%)

Query: 263 IDGGDEIDGCAREGPIRSKNEL--QVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVE 320
           I+  DE +  +  GPI SKNE+  + +P +P+ +  +     + P+GV+ S     +I+ 
Sbjct: 96  IENEDEDEDPSPSGPILSKNEILEETVPELPE-DYEISEKTIITPIGVLKSAFENNIIIH 154

Query: 321 GA---EKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRY-NSENEIPAEIRVGT 376
                EK   L EGSI  + E R  +G++ E+FGP++NP+Y ++  +S+  +  E++V  
Sbjct: 155 ATMSGEKRV-LKEGSIFCL-EDRTLIGMLTEVFGPLQNPFYRIKLPDSKKNLFDELKVRL 212

Query: 377 -SISFVQDFANHVLDDKNLYK-KGYDAS-GENDEELSDEAEFSDDEKEAEY--KRRQKME 431
              +F+     H +D   L + KG DAS G ++E   +E EFSDDEKEA +   ++Q+ +
Sbjct: 213 GEKAFIVTPDAHWIDTFELKRNKGTDASNGYDEELPEEEQEFSDDEKEALFKKMKKQQRQ 272

Query: 432 KRGMDDQKPGNRKNNRKKVKNKDGMWRNGRPSAPQMDGVGQPLPNQNQHPVSHVPASLD- 490
           ++  D++K  N  +N K       + R  +P A  +  +  PL   +  P+ H   S + 
Sbjct: 273 RKKRDNRKLANDSDNVK-------VKRARQPKANSLPKLVPPLGMSSNAPMQHGYKSRNA 325

Query: 491 QGNCSTSSIGQGFVGGTGLVPQLQQMVQNTSFSTSPSAVWTDRIPPQQPQGTFFPNVFPT 550
           + N    S       G+  VP  Q   Q  S +  P         PQQP G  +P   P 
Sbjct: 326 RENIKRESSATSNRNGSSPVPITQHHQQQFSANNYPF--------PQQPNGMPYP---PY 374

Query: 551 NGLPWPSQNYQQPP 564
           +  P P+ N+Q PP
Sbjct: 375 SPFPQPT-NFQYPP 387

RNA-binding protein required for the maturation of box H/ACA snoRNPs complex and ribosome biogenesis. During assembly of the H/ACA snoRNPs complex, it associates with the complex and disappears during maturation of the complex and is replaced by GAR1 to yield mature H/ACA snoRNPs complex. Acts as a competitive binder for CBF5 probably required to prevent non-cognate RNAs from being loaded during transport of the particle by inducing a non-productive conformation of CBF5.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A6ZRW0|NAF1_YEAS7 H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Saccharomyces cerevisiae (strain YJM789) GN=NAF1 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 155/314 (49%), Gaps = 34/314 (10%)

Query: 263 IDGGDEIDGCAREGPIRSKNEL--QVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVE 320
           I+  DE +  +  GPI SKNE+  + +P +P+ +  +     + P+GV+ S     +I+ 
Sbjct: 96  IENEDEDEDPSPSGPILSKNEILEETVPELPE-DYEISEKTIITPIGVLKSAFENNIIIH 154

Query: 321 GA---EKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRY-NSENEIPAEIRVGT 376
                EK   L EGSI  + E R  +G++ E+FGP++NP+Y ++  +S+  +  E++V  
Sbjct: 155 ATMSGEKRV-LKEGSIFCL-EDRTLIGMLTEVFGPLQNPFYRIKLPDSKKNLFDELKVRL 212

Query: 377 -SISFVQDFANHVLDDKNLYK-KGYDAS-GENDEELSDEAEFSDDEKEAEY--KRRQKME 431
              +F+     H +D   L + KG DAS G ++E   +E EFSDDEKEA +   ++Q+ +
Sbjct: 213 GEKAFIVTPDAHWIDTFELKRNKGTDASNGYDEELPEEEQEFSDDEKEALFKKMKKQQQQ 272

Query: 432 KRGMDDQKPGNRKNNRKKVKNKDGMWRNGRPSAPQMDGVGQPLPNQNQHPVSHVPASLD- 490
           ++  D++K  N  +N K       + R  +P A  +  +  PL   +  P+ H   S + 
Sbjct: 273 RKKRDNRKLANDSDNVK-------VKRARQPKANSLPKLVPPLGMSSNAPMQHGYKSRNA 325

Query: 491 QGNCSTSSIGQGFVGGTGLVPQLQQMVQNTSFSTSPSAVWTDRIPPQQPQGTFFPNVFPT 550
           + N    S       G+  VP  Q   Q  S +  P         PQQP G  +P   P 
Sbjct: 326 RENIKRESSATSNRNGSSPVPITQLHQQQFSANNYPF--------PQQPNGMPYP---PY 374

Query: 551 NGLPWPSQNYQQPP 564
           +  P P+ N+Q PP
Sbjct: 375 SPFPQPT-NFQYPP 387

RNA-binding protein required for the maturation of box H/ACA snoRNPs complex and ribosome biogenesis. During assembly of the H/ACA snoRNPs complex, it associates with the complex and disappears during maturation of the complex and is replaced by GAR1 to yield mature H/ACA snoRNPs complex. Acts as a competitive binder for CBF5 probably required to prevent non-cognate RNAs from being loaded during transport of the particle by inducing a non-productive conformation of CBF5.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	695
224127114	685	predicted protein [Populus trichocarpa]	0.912	0.925	0.456	1e-125
224124612	629	predicted protein [Populus trichocarpa]	0.830	0.917	0.488	1e-118
147771901	641	hypothetical protein VITISV_031419 [Viti	0.594	0.644	0.562	1e-110
297739266	444	unnamed protein product [Vitis vinifera]	0.594	0.930	0.560	1e-110
255553867	786	conserved hypothetical protein [Ricinus	0.556	0.492	0.539	1e-106
297848572	804	hypothetical protein ARALYDRAFT_311450 [	0.538	0.465	0.495	2e-77
449460748	727	PREDICTED: uncharacterized protein LOC10	0.879	0.840	0.353	2e-73
145335038	801	nuclear assembly factor 1 [Arabidopsis t	0.605	0.525	0.431	2e-73
29028726	801	At1g03530 [Arabidopsis thaliana] gi|1107	0.605	0.525	0.431	2e-73
358345105	567	H/ACA ribonucleoprotein complex non-core	0.522	0.640	0.469	7e-72

>gi|224127114|ref|XP_002329402.1| predicted protein [Populus trichocarpa] gi|222870452|gb|EEF07583.1| predicted protein [Populus trichocarpa]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 325/712 (45%), Positives = 429/712 (60%), Gaps = 78/712 (10%)

Query: 1   MERFMTEPSIEDQDHINQDSKVKNFKDPLYNFDSKNSDLSLADSFLDFDTIKELFEDYSP 60
           M  F+ EPS  ++++ NQ SK +NFKDP+  FD K ++   AD FLDFD+I+E F D   
Sbjct: 1   MVGFVFEPSTTEEEN-NQISKARNFKDPIQPFDQKLTNF--ADYFLDFDSIEEFFGD--- 54

Query: 61  NLDRIGLEKIEFGVLEKSLKMNQEENFHFGNLVSDGSDCVVKVEEALVGGKE-------- 112
             +R+ L+       EK +++ +++ F   +L  DGSD V + ++ +V G +        
Sbjct: 55  -PERVSLD------FEKRMEV-EDKQFVVKDLTVDGSDLVFEEKKGIVDGSDLEGLMKVK 106

Query: 113 ---------KNLSCCIEEDMGKVSLVDAKSGIASDGDGS-----KKVD---LVGNMGSFP 155
                     +L C IEE+MG+VSLV   S + +DG G       ++D   L+   GS  
Sbjct: 107 GERVELERGGSLECSIEEEMGRVSLVAVSSLVVADGGGKVVGEEAEIDNGGLINVSGSDI 166

Query: 156 ADKDGAKSGIISDEKESESESESENESSASSSSSSSSSSDNDEEEDEDEELKKEEAKKEV 215
            +  G  +G + ++++      SE+ES + SS SSSSS D+ EE+ E+E+ ++ E ++ V
Sbjct: 167 GNGSGV-NGKVVNDEDERESESSESESESESSESSSSSDDDGEEDSEEEKQEEREVREVV 225

Query: 216 ERGLGELGELEEGEIEDVDREEMTGGIDDDED--DEEDEVEMISVVDVDIDGGDEIDGCA 273
            + L +LG++EEGEI DV+ EEM G  D D +  +EED  +M+   D D D     D   
Sbjct: 226 NKELDDLGDMEEGEIRDVNGEEMVGRDDTDVEVFEEEDGDKMVEWSDFDEDE----DAVN 281

Query: 274 REGPIRSKNELQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSI 333
              PIRSKNEL+ LP VP V   L+PHHQM  VG VLS  G QVIVEG EKHNPLNEGSI
Sbjct: 282 EGDPIRSKNELKFLPPVPPVVASLEPHHQMQAVGAVLSAIGSQVIVEGVEKHNPLNEGSI 341

Query: 334 LWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFVQDFANHVLDDKN 393
           LWITE R PLGL+DEIFGPVKNPYYVVRYNSE+E+P  I  GT ISFV +FANHVL+DKN
Sbjct: 342 LWITEKRSPLGLVDEIFGPVKNPYYVVRYNSESEVPGGIHNGTVISFVPEFANHVLNDKN 401

Query: 394 LYKKGYDASGENDEELSDEAEFSDDEKEAEYKRRQKMEKRGMDDQKPGNRKNNRKKVKNK 453
           LYKKGYDASGE DEEL+ EAEFSDD++EAEYKR  KM KRG+D +  G +KNNR+KVKN+
Sbjct: 402 LYKKGYDASGEFDEELTKEAEFSDDDEEAEYKRMLKMSKRGIDCEMVGKKKNNRRKVKNR 461

Query: 454 DGMWRNGRPSAPQM-DGVGQPLPNQNQHPVSHVPASLDQGNCSTSSIGQGFVGGTGLVPQ 512
            G W+N +PS  Q+  GV Q  P+QN                + SS+G  F      VPQ
Sbjct: 462 GGGWKNNKPSGEQIPTGVDQLSPDQNLF--------------NESSVGTAFA----PVPQ 503

Query: 513 LQQMVQNTSFSTSPSAVWTDRIPPQQPQGTFFPNVFPTNGLPWPSQNYQQPPYQPMMNCG 572
                  T+   +P+  W +  P  QP+    P  FP N +PW +++  Q PYQ     G
Sbjct: 504 -------TTGVFTPNGGWVNEAPSHQPETLAIPGGFPANNMPWAARSQLQHPYQIPRAIG 556

Query: 573 LFLQQS---SQMSLPNVGLPGGPSNFFAGPTY-APWQGLLGQNGLNQ-TIGQGLPQQPAC 627
           + +QQ     +  LPN   PGG  NFFAGPTY  PW  + GQN  NQ   G G   QP  
Sbjct: 557 MPIQQQFNPCKGPLPNAFFPGGHPNFFAGPTYPPPWPAVGGQNYFNQAAFGTGFQVQPNP 616

Query: 628 PSVNASQGILPPNGLHVKQN-NLQQAAVLPGSIEAPQQFNMGASSSRGRKPY 678
            ++N  +  +   GL ++QN + Q  A+ PG+I+APQQFN GASSS GRKPY
Sbjct: 617 QAMNTIEQGMMSRGLPLEQNCSFQSPAIPPGNIKAPQQFNTGASSSHGRKPY 668

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124612|ref|XP_002319375.1| predicted protein [Populus trichocarpa] gi|222857751|gb|EEE95298.1| predicted protein [Populus trichocarpa]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 316/647 (48%), Positives = 391/647 (60%), Gaps = 70/647 (10%)

Query: 67  LEKIEFGVLEKSLKMNQEEN-FHFGNLVSDGSDC--VVKVEEALV----GGKEKNLSCCI 119
           +E  + G++ K L +N  ++ F   N + DGSD   +VKV+E  V    GG   +L C I
Sbjct: 1   MEMDDKGLVVKDLVVNVSDSVFEEKNGIVDGSDLGGLVKVKEERVELERGG---SLGCSI 57

Query: 120 EEDMGKVSLVDAKSGIASDGDGSKKVD---------LVGNMGSFPADKDGAKSGIISDEK 170
           EE+MG+VSLV   S +  DG G+K V          L+   GS   D  G    I+SDE+
Sbjct: 58  EEEMGRVSLVAELSLVVVDG-GAKVVGDEAEIGNGGLMNGSGSDIGDGSGVNGKIVSDEE 116

Query: 171 ESESESESENESSASSSSSSSSSSDNDEEEDEDEEL--KKEEAKKEVERGLGELGELEEG 228
           ESESESESE+ES +SSSSSSS   D+++EE+ D+E   KK E + EV + L  LG++EEG
Sbjct: 117 ESESESESESESESSSSSSSSDDDDDEQEEESDQEEEEKKGEVRMEVNKRLDGLGDMEEG 176

Query: 229 EIEDVDREEMTGGIDDDEDDE-----------EDEVEMISVVDVDIDGGDEIDGCAREGP 277
           EI D D EEM  G D + + E           +D  +M+   DVD    +E D    E P
Sbjct: 177 EIRDADGEEMVAGNDSEGEGEEEEEEVVEEEEDDGCKMVEWSDVD----EEEDAATGE-P 231

Query: 278 IRSKNELQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWIT 337
           IRSKNE   L  VP V+  L+ HHQMLPVGVVLS  G QVIV+G EKHNPLNEGSILWIT
Sbjct: 232 IRSKNEF--LSPVPPVHASLELHHQMLPVGVVLSAIGPQVIVQGVEKHNPLNEGSILWIT 289

Query: 338 ESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFVQDFANHVLDDKNLYKK 397
           E R PLGL+DEIFGPVKNPYYVVRYNSE+E+P+ +  GT ISFV +FANHVL+ KNL+KK
Sbjct: 290 EKRSPLGLVDEIFGPVKNPYYVVRYNSESEVPSGVLNGTLISFVPEFANHVLNVKNLHKK 349

Query: 398 GYDASGENDEELSDEAEFSDDEKEAEYKRRQKMEKRGMDDQKPGNRKNNRKKVKNKDGMW 457
           GYDASGE DEEL++E EFSDDEKEAE+KR  KM KRG+ D+K G  KNNR+KVKN+ G W
Sbjct: 350 GYDASGEYDEELTNETEFSDDEKEAEHKRMLKMSKRGVSDEKSGKNKNNRRKVKNRGGGW 409

Query: 458 RNGRPSAPQM-DGVGQPLPNQNQHPVSHVPASLDQGNCSTSSIGQGFVGGTGLVPQLQQM 516
           +N +P   QM  GV Q  P+QN    S V                    GT L P    +
Sbjct: 410 KNNKPFGEQMPTGVDQLPPDQNLRNDSAV--------------------GTSLAP----V 445

Query: 517 VQNTSFSTSPSAVWTDRIPPQQPQGTFFPNVFPTNGLPWPSQNYQQPPYQPMMNCGLFLQ 576
            Q T      + VWT  +P QQPQ       FP+N +PWP Q+  Q PYQ  M  G+ +Q
Sbjct: 446 PQTTGVYAPSNGVWTSMVPSQQPQALAIRGGFPSNNMPWPVQSQLQHPYQIPMANGMPIQ 505

Query: 577 QS---SQMSLPNVGLPGGPSNFFAGPTYAPWQGLLGQNGLNQ-TIGQGLPQQPACPSVN- 631
           Q     Q SLPN    GG  NFFAGP Y P   ++G +  NQ   G G   QP  P++N 
Sbjct: 506 QQFNPGQRSLPNALFAGGQPNFFAGPAYPPPWPVVGGHYFNQAAFGTGFQVQPNPPAMNV 565

Query: 632 ASQGILPPNGLHVKQNNLQQAAVLPGSIEAPQQFNMGASSSRGRKPY 678
             QG++      V   + Q  A+ PG+I+APQQFN GASSS GRKPY
Sbjct: 566 VDQGMISTGPPLVHNCSFQPPAIPPGNIQAPQQFNAGASSSHGRKPY 612

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771901|emb|CAN75706.1| hypothetical protein VITISV_031419 [Vitis vinifera]

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 243/432 (56%), Positives = 288/432 (66%), Gaps = 19/432 (4%)

Query: 258 VVDVDIDGGDEIDGCAREGPIRSKNELQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQV 317
           +   D DG D+  G  + G I+SKNE++ LP VP ++V LQPHHQ LPVGVV S+ G +V
Sbjct: 196 IAGSDYDGEDDSCGNVKGGAIKSKNEIEALPPVPPLDVTLQPHHQTLPVGVVSSIIGAKV 255

Query: 318 IVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTS 377
           IVEGAEKH PL EGSILWITESR PLGLIDEIFGPVKNPYYVVRYNS++E+PA I  GT 
Sbjct: 256 IVEGAEKHKPLTEGSILWITESRSPLGLIDEIFGPVKNPYYVVRYNSDSEVPAGINEGTF 315

Query: 378 ISFVQDFANHVLDDKNLYKKGYDASGENDEELSDEAEFSDDEKEAEYKRRQKMEKRGMDD 437
           ISFV  FANH+L+++NLYKKGYDASGENDEE+SD  EFSDDE+EAE+KR  KM KRG +D
Sbjct: 316 ISFVPQFANHILNERNLYKKGYDASGENDEEVSD-VEFSDDEEEAEHKRTLKMIKRGTND 374

Query: 438 QKPGNRKNNRKKVKNKDGMWRNGRPSAPQ---MDGVGQPLPNQNQHPVSHVPASLDQGNC 494
           QKPGN+KN RKKVKN+DG W+NG+ S       D      P+ +QH    V AS      
Sbjct: 375 QKPGNKKNKRKKVKNRDGAWKNGQHSTAADQFFDDKHSKTPDHDQHHTPQVAAS------ 428

Query: 495 STSSIGQGFVGGTGLVPQLQQMVQNTSFSTSPSAVWTDRI-PPQQPQGTFFPNVFPTNGL 553
           S   +GQ F GG GLVP   QM Q   F   PS +W   I P QQ Q T FPN FP + L
Sbjct: 429 SPFGVGQFFAGG-GLVPPYPQMAQVAGFIPPPSGIWASGIMPCQQQQNTVFPNSFPRDTL 487

Query: 554 PWPSQNYQQPPYQ-PMMNCGLFLQQ--SSQMSLPNVGLPGGPSNFFAGPTYAPWQGLLGQ 610
           PWP QN+   P+Q PM N  LF QQ      + PN  L  G +NFF  PTY PW GL  Q
Sbjct: 488 PWPPQNHHPHPFQMPMPNGMLFQQQFDPGHAAFPNAVLSSGQANFFMRPTYPPWPGLGAQ 547

Query: 611 NGLNQ-TIGQGLPQQPACPSVNAS-QGILPPNGLHVKQN-NLQQAAVLPGSIEAPQQFNM 667
           +GLNQ   G GL  Q A P ++A  QG L  +GL + Q+ ++Q  AV  G I+A QQFN 
Sbjct: 548 SGLNQAAFGMGLQGQHARPIISAGEQGAL-SSGLPMGQSCDVQPPAVTQGKIQASQQFNQ 606

Query: 668 GASSSRGRKPYH 679
            AS  RG+KP+H
Sbjct: 607 RASFGRGKKPFH 618

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739266|emb|CBI28917.3| unnamed protein product [Vitis vinifera]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 242/432 (56%), Positives = 290/432 (67%), Gaps = 19/432 (4%)

Query: 258 VVDVDIDGGDEIDGCAREGPIRSKNELQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQV 317
           +   D DG D+  G  + G I+SKNE++ LP VP ++V LQPHHQ LPVGVV S+ G +V
Sbjct: 2   IAGSDYDGEDDSCGNVKGGAIKSKNEIEALPPVPPLDVTLQPHHQTLPVGVVSSIIGAKV 61

Query: 318 IVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTS 377
           IVEGAEKH PL EGSILWITESR PLGL+DEIFGPVKNPYYVVRYNS++E+PA I  GT 
Sbjct: 62  IVEGAEKHKPLTEGSILWITESRSPLGLVDEIFGPVKNPYYVVRYNSDSEVPAGINEGTF 121

Query: 378 ISFVQDFANHVLDDKNLYKKGYDASGENDEELSDEAEFSDDEKEAEYKRRQKMEKRGMDD 437
           ISFV +FANH+L+++NLYKKGYDASGENDEE+SD  EFSDDE+EAE+K+  KM KRG +D
Sbjct: 122 ISFVPEFANHILNERNLYKKGYDASGENDEEVSD-VEFSDDEEEAEHKKTLKMIKRGTND 180

Query: 438 QKPGNRKNNRKKVKNKDGMWRNGRPSAPQ---MDGVGQPLPNQNQHPVSHVPASLDQGNC 494
           QKPGN+KN RKKVKN+DG W+NG+ S       D      P+ +QH    V AS      
Sbjct: 181 QKPGNKKNKRKKVKNRDGAWKNGQHSTAADQFFDDKHSKTPDHDQHHTPQVAAS------ 234

Query: 495 STSSIGQGFVGGTGLVPQLQQMVQNTSFSTSPSAVWTDRI-PPQQPQGTFFPNVFPTNGL 553
           S   +GQ F GG GLVP   QM Q   F   PS +W   I P QQ Q T FPN FPT+ L
Sbjct: 235 SPFGVGQFFAGG-GLVPPYPQMAQVAGFIPPPSGIWASGIMPCQQQQNTVFPNSFPTDTL 293

Query: 554 PWPSQNYQQPPYQ-PMMNCGLFLQQ--SSQMSLPNVGLPGGPSNFFAGPTYAPWQGLLGQ 610
           PWP QN+   P+Q PM N  LF QQ      + PN  L  G +NFF  PTY PW GL  Q
Sbjct: 294 PWPPQNHHPHPFQMPMPNGMLFQQQFDPGHAAFPNAVLSSGQANFFMRPTYPPWPGLGAQ 353

Query: 611 NGLNQ-TIGQGLPQQPACPSVNAS-QGILPPNGLHVKQN-NLQQAAVLPGSIEAPQQFNM 667
           +GLNQ   G GL  Q A P ++A  QG L  +GL + Q+ ++Q  AV  G I+A QQFN 
Sbjct: 354 SGLNQAAFGMGLQGQHARPIISAGEQGAL-SSGLPMGQSCDVQPPAVTQGKIQASQQFNQ 412

Query: 668 GASSSRGRKPYH 679
            AS  RG+KP+H
Sbjct: 413 RASFGRGKKPFH 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553867|ref|XP_002517974.1| conserved hypothetical protein [Ricinus communis] gi|223542956|gb|EEF44492.1| conserved hypothetical protein [Ricinus communis]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/413 (53%), Positives = 268/413 (64%), Gaps = 26/413 (6%)

Query: 275 EGPIRSKNELQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSIL 334
           +GPIRS+NEL+ LP VP V+V LQPHHQ+LPVGVVLS+   QVIVEG EKHNPLNEGSIL
Sbjct: 374 KGPIRSQNELKFLPPVPPVDVTLQPHHQVLPVGVVLSIINAQVIVEGVEKHNPLNEGSIL 433

Query: 335 WITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFVQDFANHVLDDKNL 394
           WITE R PLGL+DEIFGPV+NPYYVVRYNSE+E+P+ I  GT ISFV +FANHVL++KNL
Sbjct: 434 WITEKRSPLGLVDEIFGPVQNPYYVVRYNSESEVPSGISQGTRISFVAEFANHVLNEKNL 493

Query: 395 YKKGYDASGENDEELSDEAEFSDDEKEAEYKRRQKMEKRGMDDQKPGNRKNNRKKVKNKD 454
           YKKGYDASGENDEELSDEAEFSDDEKEAEY R +KM KRG++ Q  GN+KN+R K KN++
Sbjct: 494 YKKGYDASGENDEELSDEAEFSDDEKEAEYMRMKKMSKRGINGQTVGNKKNSRTKDKNRN 553

Query: 455 GMWRNGRPSA--PQMDGVGQPLPNQNQHPVSHVPASLDQGNCSTSSIGQGFVGGTGLVPQ 512
           G  +N  P      M G   P PNQNQ   S   AS++  + S+S     F GG      
Sbjct: 554 GNRKNVGPLGQHASMCGGQLPPPNQNQQNTSSAVASMNNYSSSSS-----FTGGASFFQP 608

Query: 513 LQQMVQNTSFSTSPSAVWTDRIPPQQPQGTFFPNVFPTNGLPWPSQNYQQPPYQPMMNCG 572
              M Q+       +  W   +  QQPQ    P  FP N + W +QN   PP +  +  G
Sbjct: 609 FPPMAQSAGLFQPSNGAWISGLASQQPQNAVIPGGFPANNMSWAAQNQFHPPSRMPITNG 668

Query: 573 LFLQQS---SQMSLPNVGLPGGPSNFFAGPTYAPWQGLLGQNGLNQT-IGQGLPQQPACP 628
           +  QQ    SQ SL N   PGG  +FFAGP+  PW  ++GQN  NQ     G   QP  P
Sbjct: 669 MPFQQQFIPSQGSLSNGVPPGGQMSFFAGPS--PWPAVIGQNCFNQAPFEMGFQVQPTQP 726

Query: 629 SVNAS-QGILPPNGLHVKQNNLQQAAVLPGSIEAPQQFNMGASSSR-GRKPYH 679
            +N   QG    NGL V       +AV+PG+I+APQQFN GA S R GR+ +H
Sbjct: 727 IMNVGDQG----NGLGV-------SAVIPGNIQAPQQFNSGAPSGRGGRRQFH 768

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848572|ref|XP_002892167.1| hypothetical protein ARALYDRAFT_311450 [Arabidopsis lyrata subsp. lyrata] gi|297338009|gb|EFH68426.1| hypothetical protein ARALYDRAFT_311450 [Arabidopsis lyrata subsp. lyrata]

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 201/406 (49%), Positives = 248/406 (61%), Gaps = 32/406 (7%)

Query: 223 GELEEGEIEDVDREEMTGGIDDDEDDEEDEVEMISVVDVDIDGGDEIDGCAREGPIRSKN 282
           GELEEGEIE++D E+    I+DDEDD+ D+ +  ++V    D  D++ G   + PIRSKN
Sbjct: 293 GELEEGEIENLDEEDGDDEIEDDEDDDADDDDDEAMVAWSNDEDDDL-GLQTKEPIRSKN 351

Query: 283 ELQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVP 342
           EL+ LP VP V+V L+PHH  LPVGVVLSV   QVIVEG EKH+PL EGSILWITE R P
Sbjct: 352 ELKELPPVPAVDVTLEPHHATLPVGVVLSVMSTQVIVEGMEKHSPLTEGSILWITEKRTP 411

Query: 343 LGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFVQDFANHVLDDKNLYKKGYDAS 402
           LGL+DEIFGPVK P+Y+VR+NSE+E+P  +  GT +SFV DFA H+L+ K L KKGYDAS
Sbjct: 412 LGLVDEIFGPVKCPFYIVRFNSESEVPEGVSQGTPVSFVADFAQHILNIKELQKKGYDAS 471

Query: 403 GENDEELSDEAEFSDDEKEAEYKRRQKMEKRG-MDDQKPGNRKNNRKKVKNKDGMWRNGR 461
           G+NDEE+ DE EFSDDEKEAEY+R QKMEKRG M+DQK GN +N  KK KN+D     GR
Sbjct: 472 GDNDEEIPDELEFSDDEKEAEYRRMQKMEKRGMMNDQKTGNTRN--KKKKNRDL----GR 525

Query: 462 PSAPQMDGVGQPLPNQNQHPVSHVPASLDQGNCSTSSIGQGFVGGTGLVPQLQQMVQNTS 521
           P++      G+   NQ   P+S         N S   +G G +   G  PQ+     N +
Sbjct: 526 PTS---SYSGEWTENQGSSPLS--------SNRSDPQMG-GPLSNLGPRPQMDGFPPNNA 573

Query: 522 FSTSPSAVWTDRIPPQQPQGTFFPNVFPTNGLPWPSQNYQQPPYQPMMNCGLFLQQSSQM 581
                S        P  P     PN+ P        QN  Q  +QP  N G       QM
Sbjct: 574 AWRPQSNQQNPYQLPHIPNQMGMPNLAPMQIPFMAMQNQNQMMFQPQFNGG-------QM 626

Query: 582 SLPNVGLPGGPSNFFAGPTYAPWQGLLGQNGLNQT--IGQGLPQQP 625
            +P  G PGG  NFF G    PW  L+GQN  NQ   +G+G+ QQP
Sbjct: 627 PMP--GGPGG-LNFFPGQASEPWPALVGQNCFNQPFGMGRGIQQQP 669

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460748|ref|XP_004148107.1| PREDICTED: uncharacterized protein LOC101203341 [Cucumis sativus]

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 263/745 (35%), Positives = 353/745 (47%), Gaps = 134/745 (17%)

Query: 16  INQDSKVKNFKDPLYNFDSKNSDLSLADSFLDFDTIKELFEDY-SPNL-DRIGLEKIEFG 73
           ++  SK+KN  +PL +FDSK  D SL DSFLD+D++ + F++  SPN+ D   L      
Sbjct: 18  LHDSSKLKN-SEPLDSFDSKAIDYSLVDSFLDYDSLNDWFDELTSPNMVDTQTLLPEGDA 76

Query: 74  VLEKSLKMN------------QEENFH---------------FGNLVSDGSDCVVKVEEA 106
            L +S++ +            + E+F                F ++  +G   V  V + 
Sbjct: 77  HLSQSVQKSVPVIDGVQSNFVRSEDFKIEMKTSGEACSNSTDFNSITEEGMPKVTLVLDG 136

Query: 107 LVGGKEKNLSCCIEEDMGKVSLVDAKSGIASDGDGSKKVDLVGNMGSFPADKDGAKSGII 166
                  + +  IEE M KVSLV        DG    KV+L         D +   +   
Sbjct: 137 EACSNSTDFNSIIEEGMSKVSLV-------LDGGCISKVELESEADDGEGDVESEGTSSA 189

Query: 167 SDEKESESESESENESSASSSSSSSSSSDNDEEEDEDEELKKEEAKKEVERGLGELGELE 226
           S    S S   S+NE       SSSS+S   ++E+E E + + E K+E+           
Sbjct: 190 STSSSSSSGGSSDNEVDEEEEDSSSSTSAGCDDEEEKENIVEAEGKREIGELEEGEIRDA 249

Query: 227 EGEIEDVDREEMTGGIDDDEDDEEDEVEMISVVDVDIDGGDEIDGCAREGPIRSKNELQV 286
           + E E+   ++M            D        D +   G+E +  A  GPI SKNEL+V
Sbjct: 250 DDEDEEAFADDMVAW---------DNDGEDLKEDDEDLDGEEEEAGAEGGPITSKNELKV 300

Query: 287 LPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLI 346
           LP VPQV+  LQPHHQMLPVGVVLS+ G QVIVEG EKHNPL+EGSILWITE+R PLGL+
Sbjct: 301 LPPVPQVHATLQPHHQMLPVGVVLSMLGNQVIVEGVEKHNPLSEGSILWITEARSPLGLV 360

Query: 347 DEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFVQDFANHVLDDKNLYKKGYDASGEND 406
           DEIFGPVKNPYY VRYNSE+E+P  I  GT +SFV +FA++VL++K+LYKKGYDASG ND
Sbjct: 361 DEIFGPVKNPYYSVRYNSESEVPLGISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVND 420

Query: 407 EELSDEAEFSDDEKEAEYKRRQKMEKRGMDDQK--------------------------- 439
           EE+SD+ EFSDDEKE E+K+ Q++ KR M+D +                           
Sbjct: 421 EEVSDDGEFSDDEKELEFKKMQRLAKRAMNDNQQINANKNNGRKKKNNAKARKFGERTFE 480

Query: 440 ----PGNRKNNRKKVKNKDGMWRNGR------PSAPQMDGVGQPLPNQNQHPVSHVPASL 489
               P   K    +   +      GR      P   +MD V +P PNQNQ     +   +
Sbjct: 481 NANVPDEPKKFYGQCTPEQAKISEGRKFDHPTPHQAKMDMV-RPSPNQNQQTGPPLAPFV 539

Query: 490 DQGNCSTSSIG-QGFVGGTGLVPQLQQMVQNTSFSTSPSAVWTDRIPPQQPQGTFFPNV- 547
             G C   S+  Q F+ GTG++        N  F+ + + +    +P Q  Q        
Sbjct: 540 YHGGCPNPSVAEQCFMNGTGIMSSFPP-TYNPCFTPAMNGIRPAEMPFQFQQQQNPFFPN 598

Query: 548 -FPTNGLPWPSQNYQQPPYQPMMNCGLFLQQSSQMSLPNVGLPGGPSNFFAGPTYAPWQG 606
             P NG+PW  QN  Q   Q      L                    N FAG  Y   QG
Sbjct: 599 GLPMNGMPWLLQNPAQQMPQMPQMPML--------------------NTFAGAAYP--QG 636

Query: 607 LLGQNGLNQTIGQGLPQQPACPSVNASQGILPPNGLHV--KQNNLQQAAVL--------P 656
            +G +             P   +   +QGI    GL     QNNLQ AA          P
Sbjct: 637 FVGPSS----------ALPNSSTAVGAQGIH-SGGLQFGQNQNNLQPAAQQFNPPNSHPP 685

Query: 657 GSIE---APQQFNMGASSSRGRKPY 678
           G+     APQQFN  +SS +GRK +
Sbjct: 686 GTFSGNVAPQQFNQNSSSKQGRKSH 710

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145335038|ref|NP_171852.2| nuclear assembly factor 1 [Arabidopsis thaliana] gi|9280664|gb|AAF86533.1|AC002560_26 F21B7.15 [Arabidopsis thaliana] gi|332189462|gb|AEE27583.1| nuclear assembly factor 1 [Arabidopsis thaliana]

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 206/477 (43%), Positives = 267/477 (55%), Gaps = 56/477 (11%)

Query: 223 GELEEGEIEDVDREEMTGGIDDDEDDEEDEVEMISVVDVDIDGGDEID---GCAREGPIR 279
           GELEEGEIE++D E     I+D++DD++D+ +    V+  +   ++ D   G   + PIR
Sbjct: 298 GELEEGEIENLDEENGDDDIEDEDDDDDDDDDDDDDVNEMVAWSNDEDDDLGLQTKEPIR 357

Query: 280 SKNELQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITES 339
           SKNEL+ LP VP V+V L+PHH  LPVGVVLSV   QVIVEG EKH+PL EGSILWITE 
Sbjct: 358 SKNELKELPPVPPVDVTLEPHHATLPVGVVLSVMSAQVIVEGMEKHSPLTEGSILWITEK 417

Query: 340 RVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFVQDFANHVLDDKNLYKKGY 399
           R PLGL+DEIFGPVK PYY+VR+NSE+E+P  +  GT +SFV DFA H+L+ K L KKGY
Sbjct: 418 RTPLGLVDEIFGPVKCPYYIVRFNSESEVPEGVCQGTPVSFVADFAQHILNIKELQKKGY 477

Query: 400 DASGENDEELSDEAEFSDDEKEAEYKRRQKMEKRG-MDDQKPGNRKNNRKKVKNKDGMWR 458
           DASG+NDEE+ DE EFSDDEKEAEY+R QK+EKRG M DQK GN +N  KK KN+D    
Sbjct: 478 DASGDNDEEIPDELEFSDDEKEAEYRRMQKLEKRGMMSDQKTGNTRN--KKKKNRDP--- 532

Query: 459 NGRPSAPQMDGVGQPLPNQNQHPVSHVPASLDQGNCSTSSIGQGFVGGTGLVPQLQQMVQ 518
            GRP++      G+   NQ    +S   +    G               G  PQ+     
Sbjct: 533 -GRPTS---SYSGEWTKNQGSSSLSSNRSDPQMG---------------GPRPQMDGFPP 573

Query: 519 NTSFSTSPSAVWTDRIPPQQPQGTFFPNVFPTNGLPWPSQNYQQPPYQPMMNCG--LFLQ 576
           N       +A W     PQ  Q        P    P P+Q   Q P+  M N    +F  
Sbjct: 574 N-------NAAWR----PQSNQQN------PYQLPPIPNQMGMQIPFMAMQNQNQMMFQP 616

Query: 577 QSSQMSLPNVGLPGGPSNFFAGPTYAPWQGLLGQNGLNQT--IGQGLPQQPACPSVN--- 631
           Q +   +P  G PGG  NFF G   APW  ++GQN  NQ   +G+G+ QQP    ++   
Sbjct: 617 QFNGGQMPMPGGPGG-LNFFPGQASAPWPAMVGQNCFNQQFGMGRGIQQQPLPNELSFNM 675

Query: 632 ASQGIL---PPNGLHVKQNNLQQAAVLPGSIEAPQQFNMGASSSRGRKPYHRGGGRF 685
            SQG+    P + +H  Q+ +     +P   +  QQ  M        +P      +F
Sbjct: 676 FSQGLQMHPPQSQMHRPQSQMNPQFQMPPQFQPHQQSPMNPQYQMMHRPQSPANPQF 732

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|29028726|gb|AAO64742.1| At1g03530 [Arabidopsis thaliana] gi|110735969|dbj|BAE99959.1| hypothetical protein [Arabidopsis thaliana] gi|225897866|dbj|BAH30265.1| hypothetical protein [Arabidopsis thaliana]

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 206/477 (43%), Positives = 267/477 (55%), Gaps = 56/477 (11%)

Query: 223 GELEEGEIEDVDREEMTGGIDDDEDDEEDEVEMISVVDVDIDGGDEID---GCAREGPIR 279
           GELEEGEIE++D E     I+D++DD++D+ +    V+  +   ++ D   G   + PIR
Sbjct: 298 GELEEGEIENLDEENGDDDIEDEDDDDDDDDDDDDDVNEMVAWSNDEDDDLGLQTKEPIR 357

Query: 280 SKNELQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITES 339
           SKNEL+ LP VP V+V L+PHH  LPVGVVLSV   QVIVEG EKH+PL EGSILWITE 
Sbjct: 358 SKNELKELPPVPPVDVTLEPHHATLPVGVVLSVMSAQVIVEGMEKHSPLTEGSILWITEK 417

Query: 340 RVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFVQDFANHVLDDKNLYKKGY 399
           R PLGL+DEIFGPVK PYY+VR+NSE+E+P  +  GT +SFV DFA H+L+ K L KKGY
Sbjct: 418 RTPLGLVDEIFGPVKCPYYIVRFNSESEVPEGVCQGTPVSFVADFAQHILNIKELQKKGY 477

Query: 400 DASGENDEELSDEAEFSDDEKEAEYKRRQKMEKRG-MDDQKPGNRKNNRKKVKNKDGMWR 458
           DASG+NDEE+ DE EFSDDEKEAEY+R QK+EKRG M DQK GN +N  KK KN+D    
Sbjct: 478 DASGDNDEEIPDELEFSDDEKEAEYRRMQKLEKRGMMSDQKTGNTRN--KKKKNRDP--- 532

Query: 459 NGRPSAPQMDGVGQPLPNQNQHPVSHVPASLDQGNCSTSSIGQGFVGGTGLVPQLQQMVQ 518
            GRP++      G+   NQ    +S   +    G               G  PQ+     
Sbjct: 533 -GRPTS---SYSGEWTKNQGSSSLSSNRSDPQMG---------------GPRPQMDGFPP 573

Query: 519 NTSFSTSPSAVWTDRIPPQQPQGTFFPNVFPTNGLPWPSQNYQQPPYQPMMNCG--LFLQ 576
           N       +A W     PQ  Q        P    P P+Q   Q P+  M N    +F  
Sbjct: 574 N-------NAAWR----PQSNQQN------PYQLPPIPNQMGMQIPFMAMQNQNQMMFQP 616

Query: 577 QSSQMSLPNVGLPGGPSNFFAGPTYAPWQGLLGQNGLNQT--IGQGLPQQPACPSVN--- 631
           Q +   +P  G PGG  NFF G   APW  ++GQN  NQ   +G+G+ QQP    ++   
Sbjct: 617 QFNGGQMPMPGGPGG-LNFFPGQASAPWPAMVGQNCFNQQFGMGRGIQQQPLPNELSFNM 675

Query: 632 ASQGIL---PPNGLHVKQNNLQQAAVLPGSIEAPQQFNMGASSSRGRKPYHRGGGRF 685
            SQG+    P + +H  Q+ +     +P   +  QQ  M        +P      +F
Sbjct: 676 FSQGLQMHPPQSQMHRPQSQMNPQFQMPPQFQPHQQSPMNPQYQMMHRPQSPANPQF 732

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345105|ref|XP_003636623.1| H/ACA ribonucleoprotein complex non-core subunit NAF1 [Medicago truncatula] gi|355502558|gb|AES83761.1| H/ACA ribonucleoprotein complex non-core subunit NAF1 [Medicago truncatula]

 Score =  278 bits (711), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 203/432 (46%), Positives = 257/432 (59%), Gaps = 69/432 (15%)

Query: 277 PIRSKNELQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWI 336
           PI+SKNE+Q LP VP V+V L PHH+MLPVGVV+S  G QVIVEG EKH PLNEGS+LW+
Sbjct: 175 PIKSKNEIQNLPPVPPVDVCLAPHHKMLPVGVVMSTLGAQVIVEGVEKHEPLNEGSVLWL 234

Query: 337 TESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTS-ISFVQDFANHVLDDKNLY 395
           TESR PLGL+DEIFGPVKNPYYVVRYNSEN++PA I+ GT+ +S V +FA HVL++K+LY
Sbjct: 235 TESRKPLGLVDEIFGPVKNPYYVVRYNSENDVPAGIQGGTTLVSCVPEFAEHVLNNKDLY 294

Query: 396 KKGYDASGENDEELSDEAEFSDDEKEAEYKRRQKMEKRGMDDQKPGNRKNNRKKVKNKDG 455
           +KGYDASG  DEEL DE EFSDDEKEAEY++ QKM KRG++DQ PG +KNN+KK   K+ 
Sbjct: 295 RKGYDASGAYDEELFDEVEFSDDEKEAEYRKMQKMTKRGVNDQNPGKKKNNKKKFSPKEH 354

Query: 456 MWRNGRPSAPQMDGVGQP--LPNQNQHPVSHVPAS---LDQGNCST-SSIGQGFVGGTGL 509
           +     P+AP    V  P   PN     V + PA+   +++GN S  S IGQ   GGT  
Sbjct: 355 VL---PPNAP----VASPHVFPN-----VPNAPAAAPFVNKGNYSPFSGIGQ---GGTTT 399

Query: 510 VPQLQQMVQNTSFSTSPSAVWTDRIPPQQPQGTF--------FPNVFPTNGLPWPSQN-- 559
           V   Q +    +F+   +++W +       Q TF         PN FP+N + +  QN  
Sbjct: 400 VSPFQPLNAGPNFAA--NSMWAN-------QTTFPQQPQPSLPPNAFPSNAMSYYPQNTQ 450

Query: 560 --YQQP----PYQPMMNCGLFLQQSSQMSLPNVGLPGGPSNFFA-GPTYAPWQGLLGQNG 612
             +Q P    P+Q  MN       S     P + +PG   N F+  P YAP  G LGQ  
Sbjct: 451 FSHQFPVPGIPFQQQMN------PSHGTHFPTM-MPGVQPNIFSQQPMYAP--GFLGQ-- 499

Query: 613 LNQTIGQGLPQQPACPSVNASQGILPPNGLHVKQNNLQQAAVLPGSIEAPQQFNMGASSS 672
            NQ   Q   Q    P   A Q   PP  L       Q+ + + G+   P QF+ G+S S
Sbjct: 500 -NQMPQQSFQQIQQPPIFQAQQQGFPPTELQ------QRPSPISGN---PSQFHPGSSGS 549

Query: 673 RGRKPYHRGGGR 684
           RGR  +    GR
Sbjct: 550 RGRPSFRGASGR 561

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	695
TAIR|locus:2020713	801	NAF1 "nuclear assembly factor	0.237	0.205	0.596	1.6e-62
UNIPROTKB|J9P780	296	NAF1 "Uncharacterized protein"	0.153	0.361	0.398	3.9e-15
UNIPROTKB|F1NV75	398	NAF1 "Uncharacterized protein"	0.146	0.256	0.444	1.9e-14
UNIPROTKB|F1NWY4	427	NAF1 "Uncharacterized protein"	0.146	0.238	0.444	2.4e-14
RGD|1306802	457	Naf1 "nuclear assembly factor	0.153	0.234	0.398	4.5e-14
UNIPROTKB|Q52KK4	457	Naf1 "H/ACA ribonucleoprotein	0.153	0.234	0.398	4.5e-14
UNIPROTKB|Q96HR8	494	NAF1 "H/ACA ribonucleoprotein	0.153	0.216	0.407	4.8e-14
UNIPROTKB|Q1RMQ2	360	LOC514182 "Uncharacterized pro	0.153	0.297	0.407	1.4e-13
MGI|MGI:2682306	489	Naf1 "nuclear assembly factor	0.153	0.218	0.389	1.7e-13
UNIPROTKB|F1LMR4	389	Naf1 "H/ACA ribonucleoprotein	0.153	0.275	0.398	1.8e-13

TAIR|locus:2020713 NAF1 "nuclear assembly factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 1.6e-62, Sum P(3) = 1.6e-62
 Identities = 99/166 (59%), Positives = 113/166 (68%)

Query:   277 PIRSKNEXXXXXXXXXXXXXXXXHHQMLPXXXXXXXXXXXXXXEGAEKHNPLNEGSILWI 336
             PIRSKNE                HH  LP              EG EKH+PL EGSILWI
Sbjct:   355 PIRSKNELKELPPVPPVDVTLEPHHATLPVGVVLSVMSAQVIVEGMEKHSPLTEGSILWI 414

Query:   337 TESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFVQDFANHVLDDKNLYK 396
             TE R PLGL+DEIFGPVK PYY+VR+NSE+E+P  +  GT +SFV DFA H+L+ K L K
Sbjct:   415 TEKRTPLGLVDEIFGPVKCPYYIVRFNSESEVPEGVCQGTPVSFVADFAQHILNIKELQK 474

Query:   397 KGYDASGENDEELSDEAEFSDDEKEAEYKRRQKMEKRGM-DDQKPG 441
             KGYDASG+NDEE+ DE EFSDDEKEAEY+R QK+EKRGM  DQK G
Sbjct:   475 KGYDASGDNDEEIPDELEFSDDEKEAEYRRMQKLEKRGMMSDQKTG 520

GO:0005634 "nucleus" evidence=ISM

GO:0030515 "snoRNA binding" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

UNIPROTKB|J9P780 NAF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 202 (76.2 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
 Identities = 45/113 (39%), Positives = 75/113 (66%)

Query:   327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQ 382
             P+NE ++++ ++ R   G I EIFGPV +P+YV+R+NS   I ++ I++  ++ F   ++
Sbjct:    20 PVNEETVIFKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSEHIESKGIKIKDTMYFAPSMK 78

Query:   383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKRG 434
             DF  ++  +K    +G DAS +ND+E   EA +FSDDEKE E K+R+K + +G
Sbjct:    79 DFTQYIFTEKLKQDRGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQG 131

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

UNIPROTKB|F1NV75 NAF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 212 (79.7 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 48/108 (44%), Positives = 72/108 (66%)

Query:   327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQ 382
             P+NE SI++  E R   G + E+FGPV++P+YV+R+NS   I A+ I V  ++ F   V+
Sbjct:   133 PINEESIIF-KEDRQAAGKVFEVFGPVQHPFYVLRFNSAEHIKAKGINVQDNMYFAPSVE 191

Query:   383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQK 429
             DF  ++  +K   +KG DAS +ND+E   EA +FSDDEKE E K+++K
Sbjct:   192 DFTQYIFAEKLQQEKGSDASWKNDQEPPPEALDFSDDEKEREAKQKKK 239

GO:0030515 "snoRNA binding" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

UNIPROTKB|F1NWY4 NAF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 212 (79.7 bits), Expect = 2.4e-14, P = 2.4e-14
 Identities = 48/108 (44%), Positives = 72/108 (66%)

Query:   327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQ 382
             P+NE SI++  E R   G + E+FGPV++P+YV+R+NS   I A+ I V  ++ F   V+
Sbjct:   165 PINEESIIF-KEDRQAAGKVFEVFGPVQHPFYVLRFNSAEHIKAKGINVQDNMYFAPSVE 223

Query:   383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQK 429
             DF  ++  +K   +KG DAS +ND+E   EA +FSDDEKE E K+++K
Sbjct:   224 DFTQYIFAEKLQQEKGSDASWKNDQEPPPEALDFSDDEKEREAKQKKK 271

GO:0030515 "snoRNA binding" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

RGD|1306802 Naf1 "nuclear assembly factor 1 ribonucleoprotein" [Rattus norvegicus (taxid:10116)]

 Score = 203 (76.5 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
 Identities = 45/113 (39%), Positives = 75/113 (66%)

Query:   327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQ 382
             P+NE ++++ ++ R   G I EIFGPV +P+YV+R+NS   I ++ I++  ++ F   ++
Sbjct:   187 PVNEDTVIFKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSEHIESKGIKIKDTMYFAPSMK 245

Query:   383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKRG 434
             DF  ++  +K    +G DAS +ND+E   EA +FSDDEKE E K+R+K + +G
Sbjct:   246 DFTQYIFTEKLKQDRGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQG 298

GO:0003723 "RNA binding" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0030054 "cell junction" evidence=IEA;ISO

GO:0030515 "snoRNA binding" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA;ISO;ISS

UNIPROTKB|Q52KK4 Naf1 "H/ACA ribonucleoprotein complex non-core subunit NAF1" [Rattus norvegicus (taxid:10116)]

 Score = 203 (76.5 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
 Identities = 45/113 (39%), Positives = 75/113 (66%)

Query:   327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQ 382
             P+NE ++++ ++ R   G I EIFGPV +P+YV+R+NS   I ++ I++  ++ F   ++
Sbjct:   187 PVNEDTVIFKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSEHIESKGIKIKDTMYFAPSMK 245

Query:   383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKRG 434
             DF  ++  +K    +G DAS +ND+E   EA +FSDDEKE E K+R+K + +G
Sbjct:   246 DFTQYIFTEKLKQDRGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQG 298

GO:0030515 "snoRNA binding" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

UNIPROTKB|Q96HR8 NAF1 "H/ACA ribonucleoprotein complex non-core subunit NAF1" [Homo sapiens (taxid:9606)]

 Score = 206 (77.6 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
 Identities = 46/113 (40%), Positives = 76/113 (67%)

Query:   327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQ 382
             P+NE ++++ ++ R   G I EIFGPV +P+YV+R+NS + I ++ I++  ++ F   ++
Sbjct:   222 PVNEETVIFKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKETMYFAPSMK 280

Query:   383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKRG 434
             DF  ++  +K    KG DAS +ND+E   EA +FSDDEKE E K+R+K + +G
Sbjct:   281 DFTQYIFTEKLKQDKGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQG 333

GO:0030515 "snoRNA binding" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0042254 "ribosome biogenesis" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

UNIPROTKB|Q1RMQ2 LOC514182 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 203 (76.5 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 46/113 (40%), Positives = 74/113 (65%)

Query:   327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQ 382
             P+NE ++++ T+ R   G I EIFGPV +P+YV+R+NS   I  + I++  ++ F   ++
Sbjct:   185 PVNEETVIFKTD-RQAAGKIFEIFGPVAHPFYVLRFNSSEHIENKGIKIKDTMYFAPSMK 243

Query:   383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKRG 434
             DF  ++  +K    +G DAS +ND+E   EA +FSDDEKE E K+R+K + +G
Sbjct:   244 DFTQYIFTEKLKQDRGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQG 296

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

MGI|MGI:2682306 Naf1 "nuclear assembly factor 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 202 (76.2 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
 Identities = 44/113 (38%), Positives = 75/113 (66%)

Query:   327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQ 382
             P+NE ++++ ++ R   G I EIFGPV +P+YV+R+NS + I ++ I++  ++ F   ++
Sbjct:   215 PVNEDTVIFKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKINDTMYFAPSMK 273

Query:   383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKRG 434
             DF  ++  +K    +G DAS +ND+E   E  +FSDDEKE E K+R+K + +G
Sbjct:   274 DFTQYIFTEKLKQDRGSDASWKNDQEPPPEVLDFSDDEKEKEAKQRKKSQIQG 326

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=ISO

UNIPROTKB|F1LMR4 Naf1 "H/ACA ribonucleoprotein complex non-core subunit NAF1" [Rattus norvegicus (taxid:10116)]

 Score = 203 (76.5 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 45/113 (39%), Positives = 75/113 (66%)

Query:   327 PLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF---VQ 382
             P+NE ++++ ++ R   G I EIFGPV +P+YV+R+NS   I ++ I++  ++ F   ++
Sbjct:   187 PVNEDTVIFKSD-RQAAGKIFEIFGPVAHPFYVLRFNSSEHIESKGIKIKDTMYFAPSMK 245

Query:   383 DFANHVLDDKNLYKKGYDASGENDEELSDEA-EFSDDEKEAEYKRRQKMEKRG 434
             DF  ++  +K    +G DAS +ND+E   EA +FSDDEKE E K+R+K + +G
Sbjct:   246 DFTQYIFTEKLKQDRGSDASWKNDQEPPPEALDFSDDEKEKEAKQRKKSQIQG 298

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030515 "snoRNA binding" evidence=IEA

GO:0031120 "snRNA pseudouridine synthesis" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_120000053 hypothetical protein (685 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	695
pfam04410	154	pfam04410, Gar1, Gar1/Naf1 RNA binding region	5e-33
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	2e-05
pfam04889	241	pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont	2e-05
PRK05901	509	PRK05901, PRK05901, RNA polymerase sigma factor; P	1e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	1e-04
pfam09073	424	pfam09073, BUD22, BUD22	2e-04
COG3277	98	COG3277, GAR1, RNA-binding protein involved in rRN	3e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	4e-04
pfam04147	809	pfam04147, Nop14, Nop14-like family	5e-04
pfam09073	424	pfam09073, BUD22, BUD22	7e-04
pfam09073	424	pfam09073, BUD22, BUD22	8e-04
pfam05285	317	pfam05285, SDA1, SDA1	0.001
pfam03344	715	pfam03344, Daxx, Daxx Family	0.001
COG4547	620	COG4547, CobT, Cobalamin biosynthesis protein CobT	0.001
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.002
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.002
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.002
pfam04147	809	pfam04147, Nop14, Nop14-like family	0.003
pfam04006	613	pfam04006, Mpp10, Mpp10 protein	0.003
pfam04931	784	pfam04931, DNA_pol_phi, DNA polymerase phi	0.003
pfam11705	221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	0.004

>gnl|CDD|190975 pfam04410, Gar1, Gar1/Naf1 RNA binding region

 Score =  124 bits (313), Expect = 5e-33
 Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 3/148 (2%)

Query: 287 LPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLI 346
            P     +  + P  ++  +G + SV   QV+++       L+ GSIL   E +  +G +
Sbjct: 8   GPPGGPPDYTIGPPTEIEELGTISSVVENQVVIKSTNSEKVLDFGSILC-LEDKTVIGKV 66

Query: 347 DEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFVQDFANHVLDDKNLYKKGYDASGEND 406
           DEIFGPV NP+Y V+++SE      ++VG  + +V D A   L      +KG DAS  +D
Sbjct: 67  DEIFGPVNNPFYSVKFSSEGIQAKSLKVGDKVYYVPDPAQRFLTQPLKQQKGTDASNGHD 126

Query: 407 EEL--SDEAEFSDDEKEAEYKRRQKMEK 432
           EEL   +  EFSDDE EAE KR +K +K
Sbjct: 127 EELPEEERGEFSDDEAEAEAKRGRKGKK 154

Gar1 is a small nucleolar RNP that is required for pre-mRNA processing and pseudouridylation. It is co-immunoprecipitated with the H/ACA families of snoRNAs. This family represents the conserved central region of Gar1. This region is necessary and sufficient for normal cell growth, and specifically binds two snoRNAs snR10 and snR30. This region is also necessary for nucleolar targeting, and it is thought that the protein is co-transported to the nucleolus as part of a nucleoprotein complex. In humans, Gar1 is also component of telomerase in vivo. Naf1 is an essentail protein that plays a role in ribosome biogenesis, modification of spliceosomal small nuclear RNAs and telomere synthesis, and is homologous to Gar1. Length = 154

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 48.5 bits (115), Expect = 2e-05
 Identities = 37/165 (22%), Positives = 75/165 (45%), Gaps = 21/165 (12%)

Query: 119  IEEDMGKVSLVDAKSGIASDGDG-SKKVDLVGNMGSFPADKDGAKSGIISDEKESESESE 177
            +E DM  V   D+      + D   +  DL   +   P D   + +  + DE   E   E
Sbjct: 3860 LESDMNGV-TKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLE 3918

Query: 178  SENESSASSSSSSSSSSDNDEE-----EDEDEELKKEEAKKEVERGLGELGELEEG---- 228
            +E +S+  S++++ S   + E+     ED+D + K++E +   + G+ +  + +      
Sbjct: 3919 TEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNS 3978

Query: 229  ----EIEDVD-REEMTGGIDDDEDDEEDEVEMISVVDVDIDGGDE 268
                E ED+D  E++   +D+ E D   + ++    D+D++  DE
Sbjct: 3979 QPPPENEDLDLPEDLK--LDEKEGDVSKDSDL---EDMDMEAADE 4018

Length = 4600

>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 155 PADKDGAKSGIISDEKESESESESENESSASSSSSSSSSSDNDEEEDEDEE--------- 205
             D+D  +   I  ++  E    S+ + S SSS S SS  D+D+++ EDE          
Sbjct: 94  EGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAALLRELEK 153

Query: 206 LKKEEAKKEVERGLGELGELEEGEIEDV 233
           +KKE A+++      +  E E+   E++
Sbjct: 154 IKKERAEEKEREEEEKAAEEEKAREEEI 181

This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing. Length = 241

>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 25/130 (19%), Positives = 57/130 (43%), Gaps = 14/130 (10%)

Query: 155 PADKDGAKSGIISDEKESESESESENESSASSSSSSSSSSDNDEEEDEDEELKKEEAKKE 214
           PA K        S + E ++  + +++ +        + +D+D+++D+D++L  ++    
Sbjct: 91  PAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDI--- 147

Query: 215 VERGLGELGELEEGEIEDVDREEMTGGIDDDEDDEEDEVEMISVVDVDIDGGDEIDGCAR 274
                 +  + +E + ED D ++      DDED+E+ E + +  +  D D   + D    
Sbjct: 148 ------DDDDDDEDDDEDDDDDD-----VDDEDEEKKEAKELEKLSDDDDFVWDEDDSEA 196

Query: 275 EGPIRSKNEL 284
               R   +L
Sbjct: 197 LRQARKDAKL 206

Length = 509

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 197 DEEEDEDEELKKEEAKKEVERGLGELGE--LEEGEIEDVDREEMTGGIDDDEDDEEDEVE 254
           +EE+DE+EE  KE A    +    +  +        ED + EE     +D+EDD++D  E
Sbjct: 285 EEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEE 344

Query: 255 MISVVDVDIDGGDEIDG 271
               VD+  +  DE D 
Sbjct: 345 EEEDVDLSDEEEDEEDE 361

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|220102 pfam09073, BUD22, BUD22

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 18/141 (12%)

Query: 120 EEDMGKVSLVDAKSGIASDGDGSKKVDLVGNMGSFPADKDGAKSGIISDEKESESESESE 179
           EE     S  + +    S+        LV +        +       S    +E  SESE
Sbjct: 184 EESAEDDSDDEEEEDSDSEDYSQYDGMLVDS------SDEEEGEEAPSIN-YNEDTSESE 236

Query: 180 NESSASSSSSSSSSSDNDEEEDEDEELKKEEAKKEVERGLGELGELEEGEIEDVDREEMT 239
           ++ S S  S S S SD++E     ++ K+++           L  L  G     + E+  
Sbjct: 237 SDESDSEISESRSVSDSEESSPPSKKPKEKKTSSTF------LPSLMGGYFSGSEDED-- 288

Query: 240 GGIDDDEDDEEDEVEMISVVD 260
              DDDED + D+V    V  
Sbjct: 289 ---DDDEDIDPDQVVKKPVKR 306

BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424

>gnl|CDD|225816 COG3277, GAR1, RNA-binding protein involved in rRNA processing [Translation, ribosomal structure and biogenesis]

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 303 MLPVGVVLSVRGVQ-VIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVR 361
           M  +G VL V G   VIV   ++  PLN         +   +G + ++FGPV  PY +V+
Sbjct: 1   MKRLGKVLHVCGTGMVIVRDNDRIPPLNAPVY---DANLKRIGKVVDVFGPVDEPYILVK 57

Length = 98

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 43.4 bits (103), Expect = 4e-04
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 156 ADKDGAKSGIISDEKESESESESENESSASSSSSSSSSSDNDEEEDEDEELKKEEAKKEV 215
            D+D        D +E E + +  +E        S    D +EEE+E E+ KK+ A+   
Sbjct: 331 DDEDEEDDD--DDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTR 388

Query: 216 ER 217
             
Sbjct: 389 SE 390

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 20/109 (18%)

Query: 151 MGSFPADKDGAKSGIIS-DEKESESESESE----NESSASSSSSSSSSSDNDEEEDEDEE 205
           M     D +  +    S D+ + E E + +                   D+++EED+D++
Sbjct: 282 MRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDD 341

Query: 206 LKKEEAKKEVERGLGELGELEEGEIEDVDREEMTGGIDDDEDDEEDEVE 254
           L++EE               E+ ++ D + +E     DD++D+EE+E E
Sbjct: 342 LEEEE---------------EDVDLSDEEEDEEDEDSDDEDDEEEEEEE 375

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|220102 pfam09073, BUD22, BUD22

 Score = 42.1 bits (99), Expect = 7e-04
 Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 25/151 (16%)

Query: 120 EEDMGKVSLVDAKSGIASDGDGSKKVDLVGNMGSFPADKDGAKSGIISDEKE-------S 172
           ++D  + S  + +S      +     +   +  S    +        SDE+E       +
Sbjct: 168 DKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSIN 227

Query: 173 ESESESENESSASSSSSSSSSSDNDEEEDEDEELKKEEAKKEVERGLGELGELEEGEIED 232
            +E  SE+ES  S S  S S S   + E+     KK + KK     L  L          
Sbjct: 228 YNEDTSESESDESDSEISESRSV-SDSEESSPPSKKPKEKKTSSTFLPSL---------- 276

Query: 233 VDREEMTGGI--DDDEDDEEDEVEMISVVDV 261
                M G     +DEDD++++++   VV  
Sbjct: 277 -----MGGYFSGSEDEDDDDEDIDPDQVVKK 302

BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424

>gnl|CDD|220102 pfam09073, BUD22, BUD22

 Score = 42.1 bits (99), Expect = 8e-04
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 2/114 (1%)

Query: 149 GNMGSFPADKDGAKSGIISDEKESESESESENESSASSSSSSSSSSDNDEEEDEDEELKK 208
           G        K   K+     ++  ES  + + E S S   S S  S  D+ +DE+EE   
Sbjct: 141 GIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSD 200

Query: 209 EEAKKEVERGLGELGELEEGE--IEDVDREEMTGGIDDDEDDEEDEVEMISVVD 260
            E   + +  L +  + EEGE        E+ +    D+ D E  E   +S  +
Sbjct: 201 SEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSE 254

BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal. More recently it has been shown to be involved in ribosome biogenesis. Length = 424

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 155 PADKDGAKSGIISDEKESESESESENESSASSSSS----SSSSSDNDEEED-EDEELKKE 209
              K       +  + + + E E E E    S          S    E  D EDEE K E
Sbjct: 81  EERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDE 140

Query: 210 EAKKEVERGLGELGELEEGEIED 232
            AKK  E    EL E +E E  +
Sbjct: 141 AAKKAKEDSDEELSEEDEEEAAE 163

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|217503 pfam03344, Daxx, Daxx Family

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 28/81 (34%), Positives = 44/81 (54%)

Query: 172 SESESESENESSASSSSSSSSSSDNDEEEDEDEELKKEEAKKEVERGLGELGELEEGEIE 231
             S++ S +  S S +S  S   ++ EEE+E+EE ++EE ++  E    +  E EE E +
Sbjct: 420 DPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEAD 479

Query: 232 DVDREEMTGGIDDDEDDEEDE 252
           +   EEM G  + D D EE E
Sbjct: 480 NGSEEEMEGSSEGDGDGEEPE 500

The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis, but precise role played by Daxx remains to be determined. Daxx forms a complex with Axin. Length = 715

>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 10/100 (10%)

Query: 157 DKDGAKSGIISDEKES----ESESESENESSASSSSSSSSSSDNDEEEDEDEELKKEEAK 212
           D   A + ++ D   S    E   +   E  A          DN+E+ +   E  +   +
Sbjct: 200 DDQQAFARVVRDMLGSMDMAEETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDE 259

Query: 213 KEVERGLGELGELEEGEIEDVDREEMTGGIDDDEDDEEDE 252
            E +      GE EEGE++  +        +D E DE DE
Sbjct: 260 SEEDEAEATDGEGEEGEMDAAEAS------EDSESDESDE 293

Length = 620

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 8/133 (6%)

Query: 137 SDGDGSK---KVDLVGNMGSFPADKDGAKSGIISDEKESESESESENESSASSSSSSSSS 193
           S GD ++     +  G  G  P + +G       +E   E+E E E E+   + S     
Sbjct: 631 SKGDVAEAEHTGERTGEEGERPTEAEGENG----EESGGEAEQEGETETKGENESEGEIP 686

Query: 194 SDNDEEEDEDEELKKEEAKKEVERGLGELGELEEGEIE-DVDREEMTGGIDDDEDDEEDE 252
           ++   E++ + E++ +EA  + E    E+    E E E   D  E+  G + +E ++E E
Sbjct: 687 AERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGE 746

Query: 253 VEMISVVDVDIDG 265
            E     +V+ +G
Sbjct: 747 GEAEGKHEVETEG 759

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 31/198 (15%), Positives = 56/198 (28%), Gaps = 3/198 (1%)

Query: 20   SKVKNFKDPLYNFDSKNSDLSLADSFLDFDTIKELFEDYSPNLDRIGLEKIEFGVLEKSL 79
            S     K      +SK  D        D    K+     S   D    +        K L
Sbjct: 1184 SSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRL 1243

Query: 80   KMNQEENFHFGNLVSDGSDCVVKVEEALVGGKEKNLSCCIEEDMGKVSLVDAKSGIASDG 139
            K  +  +        + S   +  E       ++  +                +G +   
Sbjct: 1244 KSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPS 1303

Query: 140  DGSKKVDLVGNMGS---FPADKDGAKSGIISDEKESESESESENESSASSSSSSSSSSDN 196
              +KK       GS       K   K      + ++  +  S ++SS          SD+
Sbjct: 1304 SPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDS 1363

Query: 197  DEEEDEDEELKKEEAKKE 214
              E+D+D E+   E + +
Sbjct: 1364 SSEDDDDSEVDDSEDEDD 1381

Length = 1388

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 30/196 (15%), Positives = 35/196 (17%), Gaps = 26/196 (13%)

Query: 462 PSAPQMDGVGQPLPNQNQHPVSHVPASLDQGNCSTSSIGQGFVGGTGLVPQLQQMVQNTS 521
               Q   + QP   Q   P    P               G+           + VQ   
Sbjct: 164 QQRQQAPQLPQP--PQQVLPQGMPPRQAAFPQQGPPEQPPGY---PQPPQGHPEQVQPQQ 218

Query: 522 FSTSPSAVWTDRIPPQQPQGTFFPNVFPTNGLPWPSQNYQQPPYQPMMNCGLFLQQSSQM 581
           F            P Q P     P   P    P     +     Q         Q   Q 
Sbjct: 219 F---------LPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPP---PPQPPQQQ 266

Query: 582 SLPNVGL-PGGPSNFFAGPTYAPWQGLLGQNGLNQTIGQGLPQQPACPSVNASQGILPPN 640
             P        P N        P                   Q    P V   QG     
Sbjct: 267 QQPPQPQAQPPPQNQPTPHPGLPQGQNAPL--------PPPQQPQLLPLVQQPQGQQRGP 318

Query: 641 GLHVKQNNLQQAAVLP 656
               +   L Q     
Sbjct: 319 QFREQLVQLSQQQREA 334

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 130 DAKSGIASDGDGSKKVDLVGNMGSFPADKD--------GAKSGIISDEKESESESESENE 181
           +     A D D   + D   N G    ++D          +     D+   E E + +  
Sbjct: 293 EDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLS 352

Query: 182 SSASSSSSSSSSSDNDEEEDEDEELKKEEAKKEVER 217
                     S  ++DEEE+E+E+ KK++   E  R
Sbjct: 353 DEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTR 388

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein

 Score = 40.7 bits (95), Expect = 0.003
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 173 ESESESENESSASSSSSSSSSSDNDEEEDEDEELKKEEAKKEVERGLGELGELEEGEIED 232
             +SES  + S  S   S  S+D++EEE+EDE L+ E    E E  L    E    ++ D
Sbjct: 94  LQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSD 153

Query: 233 VDREEMTGGIDDDEDDEEDEVEMISVV 259
            + E+     +   ++EE   E  SV 
Sbjct: 154 DETEDDE---EKKMEEEEAGEEKESVE 177

This family includes proteins related to Mpp10 (M phase phosphoprotein 10). The U3 small nucleolar ribonucleoprotein (snoRNP) is required for three cleavage events that generate the mature 18S rRNA from the pre-rRNA. In Saccharomyces cerevisiae, depletion of Mpp10, a U3 snoRNP-specific protein, halts 18S rRNA production and impairs cleavage at the three U3 snoRNP-dependent sites. Length = 613

>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 168 DEKESESESESENESSASSSSSSSSSSDNDEEEDEDEE-LKKEEAKKEVERGLGELGELE 226
           DE E E+  +SE+E     S S     + DE+ED+ E         K V R L ++    
Sbjct: 661 DEDECEAIEDSESE-----SESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLN-- 713

Query: 227 EGEIEDVDREEMTGGIDDDEDDEEDEVEM 255
                    + + GG  +DE+  +DE  M
Sbjct: 714 -------LPDALDGGDSEDEEGMDDEQMM 735

This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localised exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units. Length = 784

>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 178 SENESSASSSSSSSSSSDNDEEEDEDEELKKEEAKKEVERGLGELGELEEGEIEDVDREE 237
           ++      + S          EE+ED + K    +K+++    E  +++E + +D + EE
Sbjct: 123 NKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAE--DVDEEDEKDEEEEE 180

Query: 238 MTGGIDDDEDDEEDEVE 254
                D+D DD++D+ +
Sbjct: 181 EEEEEDEDFDDDDDDDD 197

RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	695
KOG2236	483	consensus Uncharacterized conserved protein [Funct	100.0
PF04410	154	Gar1: Gar1/Naf1 RNA binding region; InterPro: IPR0	100.0
PRK13149	73	H/ACA RNA-protein complex component Gar1; Reviewed	99.42
KOG3262	215	consensus H/ACA small nucleolar RNP component GAR1	98.96
COG3277	98	GAR1 RNA-binding protein involved in rRNA processi	98.96
KOG2236	483	consensus Uncharacterized conserved protein [Funct	97.14
KOG1999	1024	consensus RNA polymerase II transcription elongati	95.53
PF04931	784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	92.1
KOG3598	2220	consensus Thyroid hormone receptor-associated prot	92.05
KOG1830	518	consensus Wiskott Aldrich syndrome proteins [Cytos	90.24
KOG1984	1007	consensus Vesicle coat complex COPII, subunit SFB3	89.77
KOG0132	894	consensus RNA polymerase II C-terminal domain-bind	88.66
PF06991	276	Prp19_bind: Splicing factor, Prp19-binding domain;	87.93
KOG1984	1007	consensus Vesicle coat complex COPII, subunit SFB3	87.19
KOG1999	1024	consensus RNA polymerase II transcription elongati	83.57

>KOG2236 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=4.3e-56  Score=472.19  Aligned_cols=178  Identities=44%  Similarity=0.654  Sum_probs=159.4

Q ss_pred             CCCCchhhHhhhccccccCcCCCCcCCCCCCCCCcccccC--cCcCCCCCCCceecCCCCceeecceeeeeecceEEEec
Q 005475          244 DDEDDEEDEVEMISVVDVDIDGGDEIDGCAREGPIRSKNE--LQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEG  321 (695)
Q Consensus       244 dd~~eeed~~~m~~~~d~d~Deeed~~~~a~ggPiRTKNE--l~elPPvppldisI~pd~~I~pIGtIsSIVdn~VIVkS  321 (695)
                      +++.+++|..++++|+                .|++|+||  |++||||++++|+|+++..|++||+|++||+++|||++
T Consensus       163 ~~d~dddd~~e~~s~~----------------~p~ktr~e~ll~elPpv~~~~i~l~e~~~~~plG~V~svv~~~VII~s  226 (483)
T KOG2236|consen  163 DSDFDDDDVKEDRSPS----------------KPQKTRNEHLLDELPPVEPEEITLEEKGELLPLGKVSSVVDQQVIIES  226 (483)
T ss_pred             cccccccccccccccc----------------cCCCCCCchhhhcCCCCCccceeecCCcceechhHHHHHhhhceEEEe
Confidence            3344555555666655                45555555  57999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCeEEEccCCeeeEEeeeeecCCCCcEEEEEcCCCCCcc-cccccCcEEEeccCccceeeccccccccccc
Q 005475          322 AEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIP-AEIRVGTSISFVQDFANHVLDDKNLYKKGYD  400 (695)
Q Consensus       322 ~~e~~VLDeGSVLCLtEDRtvIGkV~EVFGPVk~PyYsVRFnS~eEI~-~~LkvGtkVYYVpe~S~fV~t~~L~~~KGSD  400 (695)
                      +....||+++||||+ ++|++||.|+||||||++|||+||||+.++|. .+|++|++|||||+||+|||+.+|++.||||
T Consensus       227 ~~~~~vlde~Svlf~-edR~~lG~I~EiFGpV~~P~YvvRFnS~~e~~~~gi~ig~~vy~ap~~tq~I~~~klkq~kGsD  305 (483)
T KOG2236|consen  227 TCNKEVLDEDSVLFL-EDRTALGQIFEIFGPVKNPYYVVRFNSEEEISFLGICIGEKVYYAPDFTQEIFTEKLKQGKGSD  305 (483)
T ss_pred             ccCcccccccceEEe-eccccchhhhhhhcccCCceEEEecCchhhhhhhccccCCeeEecCcchhhhcchhhhhccccc
Confidence            988899999999998 78999999999999999999999999999987 6899999999999999999999999999999


Q ss_pred             cCCCCCCCCC-CCcCCCchHHHHHHHHHHHhhhcCCCCC
Q 005475          401 ASGENDEELS-DEAEFSDDEKEAEYKRRQKMEKRGMDDQ  438 (695)
Q Consensus       401 ASN~~DEEvp-dE~EFSDDEkEae~Kr~~K~kKRg~~~q  438 (695)
                      |||.||||++ +++|||||||||+||++||++||+.+..
T Consensus       306 ASn~~DeE~p~~e~dfSDDEkEaeak~~kKQrk~r~~~k  344 (483)
T KOG2236|consen  306 ASNRYDEEIPPREQDFSDDEKEAEAKQMKKQRKRRSKVK  344 (483)
T ss_pred             ccccccccCChhhhccchHHHHHHHHHHHHHhhcccccc
Confidence            9999999999 7899999999999999999877766533

>PF04410 Gar1: Gar1/Naf1 RNA binding region; InterPro: IPR007504 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs

Probab=100.00  E-value=2.1e-38  Score=297.71  Aligned_cols=148  Identities=40%  Similarity=0.620  Sum_probs=83.6

Q ss_pred             cCcCCCCCCCceecCCCCceeecceeeeeecceEEEeccCCCCCCCCCCeEEEccCCeeeEEeeeeecCCCCcEEEEEcC
Q 005475          284 LQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYN  363 (695)
Q Consensus       284 l~elPPvppldisI~pd~~I~pIGtIsSIVdn~VIVkS~~e~~VLDeGSVLCLtEDRtvIGkV~EVFGPVk~PyYsVRFn  363 (695)
                      ..++++....++.+.++++|++||+|+|||++.|||++....+||++||+||+ +||++||+|+||||||++|||+|||+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~i~~lG~v~~i~~~~vVvk~~~~~~vl~~~s~v~~-edr~~iG~V~eiFGpV~~P~y~Vr~~   82 (154)
T PF04410_consen    4 GDGLPPVEPPDVEIGPPEEIKPLGTVSHIVENLVVVKSTPSKQVLDFGSVVCL-EDRTKIGKVDEIFGPVNNPYYSVRFN   82 (154)
T ss_dssp             ----SS---TT-B--TTSSEEEEEEEEEEETTEEEEEE-SS-CEEBTT-EEEE-TTSBEEEEEEEEESESSS-EEEEE-S
T ss_pred             cccCCCCCCCCcccCCCceEEEeeeEEEEeCCcEEEEeCCCCcCCCCCCEEEC-CCCCEeEEEeeEeCCCCceEEEEEeC
Confidence            44678888889999999999999999999999999999987799999999996 99999999999999999999999999


Q ss_pred             CCCCcc-cccccCcEEEeccCccceeeccccccccccccCCCCCCCCC-CCc-CCCchHHHHHHHHHHHhhh
Q 005475          364 SENEIP-AEIRVGTSISFVQDFANHVLDDKNLYKKGYDASGENDEELS-DEA-EFSDDEKEAEYKRRQKMEK  432 (695)
Q Consensus       364 S~eEI~-~~LkvGtkVYYVpe~S~fV~t~~L~~~KGSDASN~~DEEvp-dE~-EFSDDEkEae~Kr~~K~kK  432 (695)
                      ..+.+. ..+++|++|||++.+++||++.++.+.|||||||.||+|++ +++ ||||||+|++||+++|++|
T Consensus        83 ~~~~~~~~~~~~g~~vy~~~~~~~~~~~~~~~~~kg~das~~~d~e~~~~~~~efsdde~e~~~k~~~k~~~  154 (154)
T PF04410_consen   83 SSEGIKAKSLKVGDKVYYDPDPTSRFLPEPLKRKKGSDASNKHDEEGPEGERGEFSDDEEEREYKRGRKNKK  154 (154)
T ss_dssp             CHHHHHHHCCCTTSEEEEECC-GGGG----------------------------------------------
T ss_pred             CccccccccccccceEEECCCchheeccccccccCCCCcccCCCCCCCCCCCCCcCCCccccccccCCCCCC
Confidence            877776 47999999999999999999999999999999999999998 566 9999999999999988764

More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. This entry represents Gar1 and Naf1. Naf1 is an RNA-binding protein required for the maturation of box H/ACA snoRNPs complex and ribosome biogenesis. During assembly of the H/ACA snoRNPs complex, it associates with the complex, disappearing during maturation of the complex being replaced by GAR1 to yield mature H/ACA snoRNPs complex. Naf1 reveals a striking structural homology with the core domain of archaeal Gar1 [].; GO: 0030515 snoRNA binding, 0031120 snRNA pseudouridine synthesis, 0042254 ribosome biogenesis; PDB: 2EY4_C 3MQK_C 2RFK_C 2HVY_B 3HAY_B 3U28_C 3UAI_C 2EQN_A 2V3M_F.

>PRK13149 H/ACA RNA-protein complex component Gar1; Reviewed

Probab=99.42  E-value=6e-13  Score=113.11  Aligned_cols=71  Identities=27%  Similarity=0.490  Sum_probs=62.1

Q ss_pred             eeecceeeeee-cceEEEeccCCCCCCCCCCeEEEccCCeeeEEeeeeecCCCCcEEEEEcCCCCCcccccccCcEEEe
Q 005475          303 MLPVGVVLSVR-GVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISF  380 (695)
Q Consensus       303 I~pIGtIsSIV-dn~VIVkS~~e~~VLDeGSVLCLtEDRtvIGkV~EVFGPVk~PyYsVRFnS~eEI~~~LkvGtkVYY  380 (695)
                      |+++|+|+|++ ++.+|+++   ..++.+|+.|| +++++.||+|+||||||++||++|++.+...  +. .+|++||+
T Consensus         1 Mk~~G~~~h~~~~g~lI~~~---~~~P~~n~~V~-~~~~~~IGkV~dIfGPV~~pY~~Vk~~~~~~--~~-~~g~k~yi   72 (73)
T PRK13149          1 MKRLGKVLHYAPKGKLIIRL---DKQPPIGSVVY-DKKLKKIGKVVDVFGPVKEPYVLVKPDKKDP--PE-LVGEKLYV   72 (73)
T ss_pred             CcEeEEEEEEcCCCCEEEEc---CCCCCCCCEeE-CCCCCEeEEEEEEECCCCCcEEEEEeCCCCC--cc-ccCCEEEe
Confidence            56899999999 78999998   36888999998 5999999999999999999999999986432  23 79999996

>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=3.9e-10  Score=111.35  Aligned_cols=78  Identities=15%  Similarity=0.379  Sum_probs=68.7

Q ss_pred             ceeecceeeeeecceEEEeccCCCCCCCCCCeEEEccCCeeeEEeeeeecCCCCcEEEEEcCCCCCcc-cccccCcEEEe
Q 005475          302 QMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIP-AEIRVGTSISF  380 (695)
Q Consensus       302 ~I~pIGtIsSIVdn~VIVkS~~e~~VLDeGSVLCLtEDRtvIGkV~EVFGPVk~PyYsVRFnS~eEI~-~~LkvGtkVYY  380 (695)
                      ++++||+++|.|+..+|++.+. ..++.+++.||| |+++.||+|+|||||++.-+++|++..  .|. ...++|+++|+
T Consensus        52 evvelg~flh~Cegd~Vck~~~-~kIPyfNAPIyl-enk~qIGKVDEIfG~i~d~~fsIK~~d--gv~assfk~g~k~fi  127 (215)
T KOG3262|consen   52 EVVELGKFLHMCEGDLVCKLTN-KKIPYFNAPIYL-ENKEQIGKVDEIFGPINDVHFSIKPSD--GVQASSFKPGDKLFI  127 (215)
T ss_pred             hhhhhhhhhhhcCCceEEeecc-ccCCCCCCceee-cchhhhcchhhhcccccccEEEEecCC--CceeecccCCCeEEe
Confidence            3447999999999999999765 478999999997 999999999999999999999999874  444 46899999999


Q ss_pred             ccC
Q 005475          381 VQD  383 (695)
Q Consensus       381 Vpe  383 (695)
                      .|.
T Consensus       128 ~p~  130 (215)
T KOG3262|consen  128 DPD  130 (215)
T ss_pred             ccc
Confidence            886

>COG3277 GAR1 RNA-binding protein involved in rRNA processing [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=2.5e-09  Score=96.48  Aligned_cols=77  Identities=27%  Similarity=0.443  Sum_probs=61.8

Q ss_pred             eeecceeeeeecc-eEEEeccCCCCCCCCCCeEEEccCCeeeEEeeeeecCCCCcEEEEEcCCCCCcccccccCcEEEec
Q 005475          303 MLPVGVVLSVRGV-QVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFV  381 (695)
Q Consensus       303 I~pIGtIsSIVdn-~VIVkS~~e~~VLDeGSVLCLtEDRtvIGkV~EVFGPVk~PyYsVRFnS~eEI~~~LkvGtkVYYV  381 (695)
                      +.++|.|+|++.. .||+.++  ..++.+++.|+ +++.+.||+|.||||||++||.+|+..+.-. .....+|+++|+-
T Consensus         1 m~~lG~vlh~~~~g~vi~~~~--~~iP~l~~~V~-~~~~k~IG~V~dVfGPv~~PY~~Vkp~~~~~-~~~~~vg~~lYi~   76 (98)
T COG3277           1 MKRLGKVLHVCGTGMVIVRDN--DRIPPLNAPVY-DANLKRIGKVVDVFGPVDEPYILVKPDDRDV-KLESLVGDTLYIP   76 (98)
T ss_pred             CccceeEEEecCCceEEEeCC--CCCCCCCCeeE-ecCCCEEEEEEEEEccCCCCEEEEecccccc-ccccccceEEEec
Confidence            3579999999997 4555554  35788999997 5899999999999999999999999865322 2356799999987


Q ss_pred             cC
Q 005475          382 QD  383 (695)
Q Consensus       382 pe  383 (695)
                      ++
T Consensus        77 ~~   78 (98)
T COG3277          77 PD   78 (98)
T ss_pred             cc
Confidence            65

>KOG2236 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.011  Score=65.89  Aligned_cols=15  Identities=27%  Similarity=0.173  Sum_probs=8.0

Q ss_pred             CcchhhhhccCeeEe
Q 005475          114 NLSCCIEEDMGKVSL  128 (695)
Q Consensus       114 ~l~~~ie~~~g~vsl  128 (695)
                      .|.|.|+..-+.+++
T Consensus        72 ~l~~~i~~~~e~~~~   86 (483)
T KOG2236|consen   72 PLAAKIEMKAEDGSV   86 (483)
T ss_pred             cchhhhccccccCcc
Confidence            455666655554444

>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]

Probab=95.53  E-value=0.007  Score=71.94  Aligned_cols=9  Identities=44%  Similarity=0.619  Sum_probs=5.5

Q ss_pred             cccccCCCC
Q 005475          397 KGYDASGEN  405 (695)
Q Consensus       397 KGSDASN~~  405 (695)
                      .|+|-++.|
T Consensus       514 ~gv~~~ge~  522 (1024)
T KOG1999|consen  514 LGVEKSGEY  522 (1024)
T ss_pred             ecccccccc
Confidence            566666644

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar

Probab=92.10  E-value=0.17  Score=59.39  Aligned_cols=9  Identities=22%  Similarity=0.586  Sum_probs=4.1

Q ss_pred             hhhHhhhcc
Q 005475          249 EEDEVEMIS  257 (695)
Q Consensus       249 eed~~~m~~  257 (695)
                      +-|.+.|-+
T Consensus       728 ~mdDe~m~~  736 (784)
T PF04931_consen  728 DMDDEQMMA  736 (784)
T ss_pred             ccCHHHHHH
Confidence            334444544

The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent

>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]

Probab=92.05  E-value=0.48  Score=59.22  Aligned_cols=27  Identities=19%  Similarity=0.175  Sum_probs=16.1

Q ss_pred             cccc--cCCCCCCCCCCCCcccccCCCCC
Q 005475          613 LNQT--IGQGLPQQPACPSVNASQGILPP  639 (695)
Q Consensus       613 ~Nq~--~~~g~~~~~~~~~~~~~q~~~ps  639 (695)
                      +||.  .+-+.+.+|.||....+++|+-+
T Consensus      2039 ~~q~m~~~~q~~s~q~~~~~s~~~~~~~~ 2067 (2220)
T KOG3598|consen 2039 MNQNMGGMNQSMSHQAPPPYSSTNEMNRP 2067 (2220)
T ss_pred             cccchhhhhccccCCCCCCcccccccchh
Confidence            4566  34466777777766666666533

>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]

Probab=90.24  E-value=39  Score=38.73  Aligned_cols=32  Identities=31%  Similarity=0.556  Sum_probs=14.6

Q ss_pred             HHHHHhhhcCCCCCCCCCCCCCccccCCCCCCCC
Q 005475          425 KRRQKMEKRGMDDQKPGNRKNNRKKVKNKDGMWR  458 (695)
Q Consensus       425 Kr~~K~kKRg~~~q~~g~kkn~Rkk~~nr~~g~~  458 (695)
                      |+++|+|++..++.++++||-  +|..+|..-|+
T Consensus       174 kekrk~k~~~~Dg~~r~~k~~--Rk~~~rr~ew~  205 (518)
T KOG1830|consen  174 KEKRKQKQKRNDGPKRPNKKP--RKPHNRREEWR  205 (518)
T ss_pred             hhhhhhhcccccCCCCccccc--cCCCCccHHHH
Confidence            344444444555555554441  33344444465

>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.77  E-value=4.3  Score=49.25  Aligned_cols=37  Identities=14%  Similarity=0.073  Sum_probs=22.6

Q ss_pred             CcccccccccccCCCCCcCCCccCCCCCCCCCCCCccccC
Q 005475          642 LHVKQNNLQQAAVLPGSIEAPQQFNMGASSSRGRKPYHRG  681 (695)
Q Consensus       642 ~~~~q~~~q~~~~~~g~~~~~~qf~~~~~~~~gr~~~~~~  681 (695)
                      .+-++++.+++  ++| .+.+++|-+++..++-++|.+..
T Consensus       135 ~~~~pls~~~~--~~~-~pq~s~f~p~~~~~~p~~p~~~~  171 (1007)
T KOG1984|consen  135 GPAGPLSQGPP--TGG-FPQPSAFPPGPQGGGPPGPAMVP  171 (1007)
T ss_pred             CCCCccccCCC--CCC-CCCCccCCCCccCCCCCCCccCC
Confidence            33344444443  444 66778888888776666666655

>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]

Probab=88.66  E-value=22  Score=43.08  Aligned_cols=36  Identities=36%  Similarity=0.464  Sum_probs=24.2

Q ss_pred             CCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 005475          534 IPPQQPQGTFFPNVFPTNGLPWPSQNYQQPPYQPMMNC  571 (695)
Q Consensus       534 ~~~~q~q~~~~p~~fp~n~m~w~~qn~~~~p~q~p~~~  571 (695)
                      .++|+|...|||.+|++  =|..-|--+.+..|.|||-
T Consensus       653 ~pp~~pppp~~p~~~~~--Pp~~~~~~~~p~~~~p~Pp  688 (894)
T KOG0132|consen  653 IPPQTPPPPMFPQGFNA--PPLGFQGGAAPMSQRPMPP  688 (894)
T ss_pred             CCCCCCCCCCCccCCCC--CCCcccccCCCcccCCCCC
Confidence            67788888899999987  3344444455566666654

>PF06991 Prp19_bind: Splicing factor, Prp19-binding domain; InterPro: IPR009730 This entry represents the C terminus (approximately 300 residues) of eukaryotic micro-fibrillar-associated protein 1, which is a component of elastin-associated microfibrils in the extracellular matrix []

Probab=87.93  E-value=0.36  Score=51.11  Aligned_cols=11  Identities=18%  Similarity=-0.021  Sum_probs=5.9

Q ss_pred             hhHhhhccccc
Q 005475          250 EDEVEMISVVD  260 (695)
Q Consensus       250 ed~~~m~~~~d  260 (695)
                      +.++...+|-.
T Consensus       112 dpE~EyeaWKl  122 (276)
T PF06991_consen  112 DPEAEYEAWKL  122 (276)
T ss_pred             ChHHHHHHHHH
Confidence            44455556654

>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.19  E-value=39  Score=41.64  Aligned_cols=23  Identities=13%  Similarity=0.209  Sum_probs=12.7

Q ss_pred             CCCCCCCCCCCCCCcccCCCCCC
Q 005475          473 PLPNQNQHPVSHVPASLDQGNCS  495 (695)
Q Consensus       473 ~~p~~~~~~~~~~~~~~~~~~~~  495 (695)
                      ..|.++-+...+.++.+.|++.-
T Consensus        15 g~~~~~~g~~~~~a~~~~~~~~~   37 (1007)
T KOG1984|consen   15 GPPNFYGGSSNSLAQAMPNGSIN   37 (1007)
T ss_pred             CCCCcCCCCCchhhhhccCCccC
Confidence            34455555555666666665554

>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]

Probab=83.57  E-value=0.66  Score=56.10  Aligned_cols=8  Identities=13%  Similarity=0.181  Sum_probs=4.0

Q ss_pred             ceEEEecc
Q 005475          315 VQVIVEGA  322 (695)
Q Consensus       315 n~VIVkS~  322 (695)
                      +.|-|+|.
T Consensus       211 GyIYIEA~  218 (1024)
T KOG1999|consen  211 GYIYIEAD  218 (1024)
T ss_pred             eeEEEEec
Confidence            35555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	695
2v3m_A	131	NAF1; ribosomal protein, GAR1, snoRNP, phosphoryla	7e-30
2eqn_A	103	Hypothetical protein LOC92345; NAF1 domain, hypoth	3e-26
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-05
2ey4_C	82	Small nucleolar RNP similar to GAR1; trimeric comp	1e-04

>2v3m_A NAF1; ribosomal protein, GAR1, snoRNP, phosphorylation, hypothetical protein; 2.74A {Saccharomyces cerevisiae} Length = 131

 Score =  113 bits (285), Expect = 7e-30
 Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 9/124 (7%)

Query: 276 GPIRSKNEL--QVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAE--KHNPLNEG 331
           GPI SKNE+  + +P +P+ +  +     + P+GV+ S     +I+      +   L EG
Sbjct: 2   GPILSKNEILEETVPELPE-DYEISEKTIITPIGVLKSAFENNIIIHATMSGEKRVLKEG 60

Query: 332 SILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE---IRVGTSISFVQDFANHV 388
           SI  + E R  +G++ E+FGP++NP+Y ++     +   +   +R+G     V   A+ +
Sbjct: 61  SIFCL-EDRTLIGMLTEVFGPLQNPFYRIKLPDSKKNLFDELKVRLGEKAFIVTPDAHWI 119

Query: 389 LDDK 392
              +
Sbjct: 120 DTFE 123

>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein BC008207 [HOMO sapiens], structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score =  102 bits (255), Expect = 3e-26
 Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 5/106 (4%)

Query: 276 GPIRSKNELQVLPLVPQVNVVLQPHHQMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILW 335
           G   S  EL   P V ++ ++L    ++ P+G+V S+    VI+E      P+NE ++++
Sbjct: 1   GSSGSSGEL---PSVEELTIILPEDIELKPLGMVSSIIEQLVIIESMTNLPPVNEETVIF 57

Query: 336 ITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAE-IRVGTSISF 380
               R   G I EIFGPV +P+YV+R+NS + I ++ I++  ++ F
Sbjct: 58  K-SDRQAAGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKIKETMYF 102

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.8 bits (118), Expect = 3e-06
 Identities = 26/137 (18%), Positives = 42/137 (30%), Gaps = 5/137 (3%)

Query: 511 PQLQ-QMVQNTSFSTSPSAVWTDRIPPQQPQGTFFPNVFPTNGLPWPSQNYQQPPYQPMM 569
           PQ Q Q  QN +    P+     + P           + P   +P   Q     P Q  +
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 570 NCGLFLQQSSQMSLPNVGLPGGPSNFFAGPTYAPWQGLLGQNGLNQTIGQGLPQQPACPS 629
           +  +    +S   +    +P    N +  P   P Q         Q +      QP+   
Sbjct: 70  HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQV-PVQMGTPLQQQQQPMAAPAYGQPSAA- 127

Query: 630 VNASQGILPPNGLHVKQ 646
               Q + P N L+   
Sbjct: 128 --MGQNMRPMNQLYPID 142

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.7 bits (110), Expect = 3e-05
 Identities = 32/173 (18%), Positives = 39/173 (22%), Gaps = 11/173 (6%)

Query: 461 RPSAPQMDGVGQPLPNQNQHPVSHVPASLDQGNCSTSSIGQGFVGGTGLVPQLQQMVQNT 520
           R         GQ      Q      P           S GQ  +   G VP + Q    T
Sbjct: 7   RVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAG---MSYGQMGMPPQGAVPSMGQQQFLT 63

Query: 521 SFSTSPSAVWTDRIPPQQPQGTFFPNVFPTNGLPWPSQNYQQPPYQPMMNCGLFLQQSSQ 580
                           Q  Q T   N    + +P    N    P  P+       QQ   
Sbjct: 64  PAQEQL--------HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQP 115

Query: 581 MSLPNVGLPGGPSNFFAGPTYAPWQGLLGQNGLNQTIGQGLPQQPACPSVNAS 633
           M+ P  G P         P    +   L            LP  P        
Sbjct: 116 MAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERM 168

>2ey4_C Small nucleolar RNP similar to GAR1; trimeric complex, structural genomics, PSI, protein structur initiative; 2.11A {Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3mqk_C 2rfk_C Length = 82

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 302 QMLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVR 361
           +M  +G VL       ++        L     + + +    +G++ ++FGPVK PY  ++
Sbjct: 7   KMKRLGKVLHYAKQGFLIVRTNWVPSL--NDRV-VDKRLQFVGIVKDVFGPVKMPYVAIK 63

Query: 362 YNSEN 366
               N
Sbjct: 64  PKVSN 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	695
d2ey4c1	73	b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon Py	3e-11

>d2ey4c1 b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 73

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Gar1-like SnoRNP
domain: Gar1 homolog PF1791
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 57.0 bits (138), Expect = 3e-11
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 303 MLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRY 362
           M  +G VL       ++        LN    + + +    +G++ ++FGPVK PY  ++ 
Sbjct: 1   MKRLGKVLHYAKQGFLIVRTNWVPSLN--DRV-VDKRLQFVGIVKDVFGPVKMPYVAIKP 57

Query: 363 NSENEI 368
              N  
Sbjct: 58  KVSNPE 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	695
d2ey4c1	73	Gar1 homolog PF1791 {Archaeon Pyrococcus furiosus	99.65

>d2ey4c1 b.43.3.5 (C:1-73) Gar1 homolog PF1791 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Gar1-like SnoRNP
domain: Gar1 homolog PF1791
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.65  E-value=1.7e-16  Score=112.43  Aligned_cols=73  Identities=23%  Similarity=0.346  Sum_probs=60.9

Q ss_pred             EEECCEEEEEECCEEEEECCCCCCCCCCCCEEEECCCCEEEEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEEC
Q ss_conf             4632004334153699952689888899985998269812377652003878838999728888863102357679964
Q 005475          303 MLPVGVVLSVRGVQVIVEGAEKHNPLNEGSILWITESRVPLGLIDEIFGPVKNPYYVVRYNSENEIPAEIRVGTSISFV  381 (695)
Q Consensus       303 I~pIGtIsSIVdn~VIVkS~~e~~VLDeGSVLcLtEDRtvIGkVfEVFGPVsqPyYsVRFnS~eEI~~~IkvGtkVYYV  381 (695)
                      |+++|+|+|++++.++|....  .++.+|++|| +++|+.||+|+||||||++|||+||+++...   ...+|++||..
T Consensus         1 Mk~lG~i~hi~~~~~vI~~~~--~~p~~~~~v~-~~~~~~iG~v~evfGpv~~P~~~v~~~~~~~---~~~vG~kvYvd   73 (73)
T d2ey4c1           1 MKRLGKVLHYAKQGFLIVRTN--WVPSLNDRVV-DKRLQFVGIVKDVFGPVKMPYVAIKPKVSNP---EIYVGEVLYVD   73 (73)
T ss_dssp             CBCCCCEEEEETTTEEEEECS--SCCCTTCEEE-CTTCCCCEEEEEEEEESSSCEEEEEECSSSC---STTBTCCCEEC
T ss_pred             CCEEEEEEEECCCCEEEEECC--CCCCCCCEEE-CCCCCEEEEEEEEECCCCCCEEEEEECCCCH---HHHCCCEEEEC
T ss_conf             947079999908960999778--8898999969-7689587899998888898589999789981---67579748759