Citrus Sinensis ID: 005493
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 694 | 2.2.26 [Sep-21-2011] | |||||||
| Q9MA55 | 668 | Acyl-CoA-binding domain-c | no | no | 0.476 | 0.495 | 0.367 | 7e-64 | |
| Q8RWD9 | 648 | Acyl-CoA-binding domain-c | no | no | 0.471 | 0.504 | 0.360 | 1e-62 | |
| Q5EA50 | 372 | Rab9 effector protein wit | yes | no | 0.386 | 0.720 | 0.278 | 2e-23 | |
| Q61191 | 2045 | Host cell factor 1 OS=Mus | yes | no | 0.328 | 0.111 | 0.300 | 1e-21 | |
| P87061 | 1147 | Tip elongation aberrant p | yes | no | 0.322 | 0.195 | 0.297 | 2e-21 | |
| Q7Z6M1 | 372 | Rab9 effector protein wit | yes | no | 0.377 | 0.704 | 0.276 | 3e-21 | |
| P51610 | 2035 | Host cell factor 1 OS=Hom | no | no | 0.328 | 0.112 | 0.296 | 4e-21 | |
| Q8VCH5 | 380 | Rab9 effector protein wit | no | no | 0.329 | 0.602 | 0.290 | 1e-20 | |
| Q8H4D4 | 1043 | tRNA wybutosine-synthesiz | no | no | 0.319 | 0.212 | 0.309 | 2e-20 | |
| Q4V8F4 | 372 | Rab9 effector protein wit | no | no | 0.329 | 0.615 | 0.286 | 3e-20 |
| >sp|Q9MA55|ACBP4_ARATH Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 245 bits (626), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 188/335 (56%), Gaps = 4/335 (1%)
Query: 75 NWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLY 134
W +G +P R+ H AAVI +KM + GG L D+ VL+ ++W+ +K+
Sbjct: 170 QWTAPQTSGQRPKARYEHGAAVIQDKMYIYGGNHNGRYLGDLHVLDLKSWTWSRVETKVA 229
Query: 135 L--SPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192
+S P + C GHSLI+W K+L +GG T S+ + V FD T WS+++ G
Sbjct: 230 TESQETSTPTLLAPCAGHSLIAWDNKLLSIGGHTKDPSESMQVKVFDPHTITWSMLKTYG 289
Query: 193 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252
PV+R G +V L++FGG+D KR LNDLH+ DL ++TW + G PSPRS+H
Sbjct: 290 KPPVSRGGQSVTMVGKTLVIFGGQDAKRSLLNDLHILDLDTMTWDEIDAVGVSPSPRSDH 349
Query: 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKW 312
AA++ ++ LLIFGG S + +DL+ LD +TM W+R +G P+PRAG GV G W
Sbjct: 350 AAAVHAERFLLIFGGGSHATCFDDLHVLDLQTMEWSRPAQQGDAPTPRAGHAGVTIGENW 409
Query: 313 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGG 372
+I GGG K +E+++ ++ WSV + +++G +LV+ + +D LVAFGG
Sbjct: 410 FIVGGGDNKSGASESVVLNMSTLAWSVVASVQGRVPLASEGLSLVVSSYNGEDVLVAFGG 469
Query: 373 IKKEPSNQVEVLSIEKNESSMGRRSTPNAKGPGQL 407
+N++ +L + + S + T A PG L
Sbjct: 470 YNGRYNNEINLL--KPSHKSTLQTKTLEAPLPGSL 502
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Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with oleoyl-CoA, barely with palmitoyl-CoA, but not with arachidonyl-CoA. May function as an intracellular carrier of acyl-CoA esters. Plays a role in the biosynthesis of membrane lipids including galactolipids and phospholipids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWD9|ACBP5_ARATH Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (615), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/333 (36%), Positives = 185/333 (55%), Gaps = 6/333 (1%)
Query: 75 NWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLY 134
W +G P R+ H AAVI +KM + GG L D+ VL+ ++W+ +K+
Sbjct: 171 QWTAPRTSGQPPKARYQHGAAVIQDKMYMYGGNHNGRYLGDLHVLDLKNWTWSRVETKVV 230
Query: 135 L--SPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192
+S P K+ C GHSLI W ++L +GG T S+ + V FD WS+++ G
Sbjct: 231 TGSQETSSPAKLTHCAGHSLIPWDNQLLSIGGHTKDPSESMPVMVFDLHCCSWSILKTYG 290
Query: 193 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252
P++R G +V L++FGG+D KR LNDLH+ DL ++TW + G+ P+PRS+H
Sbjct: 291 KPPISRGGQSVTLVGKSLVIFGGQDAKRSLLNDLHILDLDTMTWEEIDAVGSPPTPRSDH 350
Query: 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKW 312
AA++ ++ LLIFGG S + +DL+ LD +TM W+R +G P+PRAG GV G W
Sbjct: 351 AAAVHAERYLLIFGGGSHATCFDDLHVLDLQTMEWSRHTQQGDAPTPRAGHAGVTIGENW 410
Query: 313 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGG 372
YI GGG K ++T++ ++ WSV + +++G +LV+ + +D +VAFGG
Sbjct: 411 YIVGGGDNKSGASKTVVLNMSTLAWSVVTSVQEHVPLASEGLSLVVSSYNGEDIVVAFGG 470
Query: 373 IKKEPSNQVEVLSIEKNES----SMGRRSTPNA 401
+N+V VL S MG + P++
Sbjct: 471 YNGHYNNEVNVLKPSHKSSLKSKIMGASAVPDS 503
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Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with oleoyl-CoA, barely with palmitoyl-CoA, but not with arachidonyl-CoA. May function as an intracellular carrier of acyl-CoA esters. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5EA50|RABEK_BOVIN Rab9 effector protein with kelch motifs OS=Bos taurus GN=RABEPK PE=2 SV=1 | Back alignment and function description |
|---|
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 119/287 (41%), Gaps = 19/287 (6%)
Query: 63 PEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIG-------NKMIVVGGESGNGLLDD 115
P + G E W L++ GD P R H+ + + K+ +VGG N D
Sbjct: 5 PVLEPGDKPRKETWYTLTLVGDSPCARVGHSCSYLPPVGDAERGKVFIVGGADPNRSFSD 64
Query: 116 VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175
V ++ W A+S+ L IP+C HS+ W V G D +R +
Sbjct: 65 VHTIDLGTHQWDLATSEGLLPRYEHTSFIPSCTPHSI--W------VFGGADQSGNRNCL 116
Query: 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLND--LHMFDLK 232
+ +T W+ E G P R+ HT A L +FGG + + + D LH+FD
Sbjct: 117 QVLNPDTRTWTTPEVTGPPPSPRTFHTSSAAIGDQLYVFGGGERGAQPVQDVQLHVFDAN 176
Query: 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292
+LTW G PSPR HV K L I GG + +DL+ +D M W +++
Sbjct: 177 TLTWSQPETHGKPPSPRHGHVMVAAGTK-LFIHGGLAGDNFYDDLHCIDISDMKWQKLRP 235
Query: 293 RGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339
G P+ A V G Y+ GG + + I K W++
Sbjct: 236 TGAAPTGCAAHSAVAVGKHLYVFGGMTPTGALNTMYQYHIEKQHWTL 282
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Rab9 effector required for endosome to trans-Golgi network (TGN) transport. Bos taurus (taxid: 9913) |
| >sp|Q61191|HCFC1_MOUSE Host cell factor 1 OS=Mus musculus GN=Hcfc1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 123/263 (46%), Gaps = 35/263 (13%)
Query: 78 VLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGN-GLLDDVQVLNFDRFSWTAASSKLYLS 136
V+ +G P PR H A I ++V GG GN G++D++ V N W + +
Sbjct: 22 VVGWSGPVPRPRHGHRAVAIKELIVVFGG--GNEGIVDELHVYNTATNQWFIPAVR---- 75
Query: 137 PSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK----G 192
+P P C + + G ++L+ GG + G ++ W ++AK G
Sbjct: 76 -GDIP---PGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKRLKAKTPKNG 131
Query: 193 DIPVARSGHTVVRASSVLILFGG-----EDGKR---RKLNDLHMFDLKS----LTW-LPL 239
P R GH+ + LFGG ED K R LNDL++ +L+ + W +P+
Sbjct: 132 PPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPI 191
Query: 240 HCTGTGPSPRSNHVAALYDDKN-----LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG 294
G P PR +H A +Y +K+ L+I+GG S + L DL++LD ET+ W + + G
Sbjct: 192 -TYGVLPPPRESHTAVVYTEKDNKKSKLVIYGGMSGCR-LGDLWTLDIETLTWNKPSLSG 249
Query: 295 FHPSPRAGCCGVLCGTKWYIAGG 317
P PR+ G K Y+ GG
Sbjct: 250 VAPLPRSLHSATTIGNKMYVFGG 272
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Involved in control of the cell cycle. Also antagonizes transactivation by ZBTB17 and GABP2; represses ZBTB17 activation of the p15(INK4b) promoter and inhibits its ability to recruit p300. Coactivator for EGR2 and GABP2. Tethers the chromatin modifying Set1/Ash2 histone H3 'Lys-4' methyltransferase (H3K4me) and Sin3 histone deacetylase (HDAC) complexes (involved in the activation and repression of transcription respectively) together. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. Mus musculus (taxid: 10090) |
| >sp|P87061|TEA1_SCHPO Tip elongation aberrant protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tea1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 110/245 (44%), Gaps = 21/245 (8%)
Query: 83 GDKPIPRFNHAAAVIGNKMIVVGGESGNGLLD----DVQVLNFDRFSWTAASSKLYLSPS 138
G+ P PR HA+ +IGN IV GG + + + D + +LN W A++
Sbjct: 128 GETPSPRLGHASILIGNAFIVFGGLTNHDVADRQDNSLYLLNTSSLVWQKANASG----- 182
Query: 139 SLPLKIPACR-GHSLISWGKKVLLVGGKT-DSGSDRVSVW---TFDTETECWSVVEAKGD 193
P+ R GH++ G K+ L GG+ D + + + +T W + D
Sbjct: 183 ----ARPSGRYGHTISCLGSKICLFGGRLLDYYFNDLVCFDLNNLNTSDSRWELASVVND 238
Query: 194 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253
P AR+GH S L +FGG DG NDL + K W + G P+PR+ H
Sbjct: 239 PPPARAGHVAFTFSDKLYIFGGTDGANF-FNDLWCYHPKQSAWSKVETFGVAPNPRAGHA 297
Query: 254 AALYDDKNLLIFGGSSKSKT-LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKW 312
A++ + L +FGG + T LNDLY+ + W ++ F PSPR+ G
Sbjct: 298 ASVVEGI-LYVFGGRASDGTFLNDLYAFRLSSKHWYKLSDLPFTPSPRSSHTLSCSGLTL 356
Query: 313 YIAGG 317
+ GG
Sbjct: 357 VLIGG 361
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Cell polarity protein. Acts as an end marker, directing the growth machinery to the cell poles. Involved in the regulation of microtubular organization, affecting the maintenance of a single central axis. Prevents the curling of microtubule tips around the cell ends and is required for the retention of polarity factors such as pom1, tip1 and tea2 at the cell ends, necessary for the cell to grow in a straight line. Links tip1 and tea4 in a common complex. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q7Z6M1|RABEK_HUMAN Rab9 effector protein with kelch motifs OS=Homo sapiens GN=RABEPK PE=1 SV=1 | Back alignment and function description |
|---|
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 122/293 (41%), Gaps = 31/293 (10%)
Query: 63 PEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAV---IGN----KMIVVGGESGNGLLDD 115
P + G W L++ GD P R H+ + +GN K+ +VGG + N D
Sbjct: 5 PVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFSD 64
Query: 116 VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175
V ++ + W + K L IP+C ++ + GG SG +R +
Sbjct: 65 VHTMDLGKHQWDLDTCKGLLPRYEHASFIPSCTP-------DRIWVFGGANQSG-NRNCL 116
Query: 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLND--LHMFDLK 232
+ ET W+ E P R+ HT A + L +FGG + + + D LH+FD
Sbjct: 117 QVLNPETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDAN 176
Query: 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292
+LTW G PSPR HV K L I GG + + +DL+ +D M W ++
Sbjct: 177 TLTWSQPETLGNPPSPRHGHVMVAAGTK-LFIHGGLAGDRFYDDLHCIDISDMKWQKLNP 235
Query: 293 RGFHPSPRAGCCGVLCGTKWYIAGGGS------------RKKRHAETLIFDIL 333
G P+ A V G YI GG + +++H L FD L
Sbjct: 236 TGAAPAGCAAHSAVAMGKHVYIFGGMTPAGALDTMYQYHTEEQHWTLLKFDTL 288
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Rab9 effector required for endosome to trans-Golgi network (TGN) transport. Homo sapiens (taxid: 9606) |
| >sp|P51610|HCFC1_HUMAN Host cell factor 1 OS=Homo sapiens GN=HCFC1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 123/263 (46%), Gaps = 35/263 (13%)
Query: 78 VLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGN-GLLDDVQVLNFDRFSWTAASSKLYLS 136
V+ +G P PR H A I ++V GG GN G++D++ V N W + +
Sbjct: 22 VVGWSGPVPRPRHGHRAVAIKELIVVFGG--GNEGIVDELHVYNTATNQWFIPAVR---- 75
Query: 137 PSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK----G 192
+P P C + + G ++L+ GG + G ++ W ++AK G
Sbjct: 76 -GDIP---PGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKRLKAKTPKNG 131
Query: 193 DIPVARSGHTVVRASSVLILFGG-----EDGKR---RKLNDLHMFDLKS----LTW-LPL 239
P R GH+ + LFGG ED K R LNDL++ +L+ + W +P+
Sbjct: 132 PPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYILELRPGSGVVAWDIPI 191
Query: 240 HCTGTGPSPRSNHVAALYDDKN-----LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG 294
G P PR +H A +Y +K+ L+I+GG S + L DL++LD +T+ W + + G
Sbjct: 192 -TYGVLPPPRESHTAVVYTEKDNKKSKLVIYGGMSGCR-LGDLWTLDIDTLTWNKPSLSG 249
Query: 295 FHPSPRAGCCGVLCGTKWYIAGG 317
P PR+ G K Y+ GG
Sbjct: 250 VAPLPRSLHSATTIGNKMYVFGG 272
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Involved in control of the cell cycle. Also antagonizes transactivation by ZBTB17 and GABP2; represses ZBTB17 activation of the p15(INK4b) promoter and inhibits its ability to recruit p300. Coactivator for EGR2 and GABP2. Tethers the chromatin modifying Set1/Ash2 histone H3 'Lys-4' methyltransferase (H3K4me) and Sin3 histone deacetylase (HDAC) complexes (involved in the activation and repression of transcription, respectively) together. Component of a THAP1/THAP3-HCFC1-OGT complex that is required for the regulation of the transcriptional activity of RRM1. As part of the NSL complex it may be involved in acetylation of nucleosomal histone H4 on several lysine residues. In case of human herpes simplex virus (HSV) infection, HCFC1 forms a multiprotein-DNA complex with the viral transactivator protein VP16 and POU2F1 thereby enabling the transcription of the viral immediate early genes. Homo sapiens (taxid: 9606) |
| >sp|Q8VCH5|RABEK_MOUSE Rab9 effector protein with kelch motifs OS=Mus musculus GN=Rabepk PE=2 SV=2 | Back alignment and function description |
|---|
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 105/251 (41%), Gaps = 22/251 (8%)
Query: 63 PEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVI-------GNKMIVVGGESGNGLLDD 115
P + G W L+ GD+P PR H+ + K+ +VGG + N D
Sbjct: 13 PILEPGDKPRKATWYTLTCPGDRPCPRVGHSCSYFPPVGDAESGKIFIVGGANPNQSFSD 72
Query: 116 VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175
V ++ W A+ + L +P+C HS+ W V G D +R +
Sbjct: 73 VHTMDLGTHQWDTATREGLLPRYEHASFLPSCSPHSI--W------VFGGADQSGNRNCL 124
Query: 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLND--LHMFDLK 232
E WS E G P R+ HT A + L +FGG + + + D LH+FD
Sbjct: 125 QVMSPEDRTWSTPEVTGSPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVEDVKLHVFDAN 184
Query: 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292
+LTW G+ PSPR HV K L I GG + K +DL+ +D M W ++
Sbjct: 185 TLTWSQPETHGSPPSPRHGHVMVAAGTK-LFIHGGLAGDKFFDDLHCIDIGDMSWQKLGP 243
Query: 293 RGFHPSPRAGC 303
G P GC
Sbjct: 244 TGAVP---VGC 251
|
Rab9 effector required for endosome to trans-Golgi network (TGN) transport. Mus musculus (taxid: 10090) |
| >sp|Q8H4D4|TYW23_ORYSJ tRNA wybutosine-synthesizing protein 2/3/4 OS=Oryza sativa subsp. japonica GN=Os07g0515000 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 107/236 (45%), Gaps = 14/236 (5%)
Query: 86 PIPRFNHAAAVIGNKMIVVGGESG-NGLLDDVQVLNFDRFSWTAA-SSKLYLSPSSLPLK 143
P PR H V+GN + VVGG SG + +L+D+ VL W+ S + P
Sbjct: 346 PSPRMGHTITVVGNDIYVVGGRSGPSEILNDIWVLERSNNRWSKVDCSGDFFRPR----- 400
Query: 144 IPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTV 203
H+ + +KV + GG +D G + DT + W+V+ P AR H++
Sbjct: 401 ----HRHAAAAVDRKVYVFGGLSDDGLCS-CMNIMDTASIQWNVISPDDKWPCARHSHSL 455
Query: 204 VRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLL 263
V S L LFGG DG+ R LND + FD +L W + G PSPR +H +Y D L
Sbjct: 456 VSYGSKLFLFGGHDGQ-RALNDFYSFDTTTLKWNKENTNGKAPSPRFSHCMFIYKDY-LG 513
Query: 264 IFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS 319
I GG ++ ++ L+ + IW + I V+ I GGG+
Sbjct: 514 ILGGCPIRESSQEIALLNLKHKIWFYVSIPSLSQCLCVRSSSVIIDDDLVIVGGGA 569
|
S-adenosyl-L-methionine-dependent transferase that acts as a component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q4V8F4|RABEK_RAT Rab9 effector protein with kelch motifs OS=Rattus norvegicus GN=Rabepk PE=2 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 106/251 (42%), Gaps = 22/251 (8%)
Query: 63 PEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIG-------NKMIVVGGESGNGLLDD 115
P + G W L+ GDKP PR H+ + K+ +VGG + N D
Sbjct: 5 PILEPGDKPRKAAWYTLTCPGDKPCPRVGHSCSYFPPVGEAEKGKVFIVGGANPNQSFSD 64
Query: 116 VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175
V ++ W A+ + L +P+C HS+ W V G D +R +
Sbjct: 65 VHTMDLGTHRWDTATREGLLPRYEHASFLPSCSPHSI--W------VFGGADQSGNRNCL 116
Query: 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLND--LHMFDLK 232
+ E WS E G P R+ HT A + L +FGG + + + D LH+FD
Sbjct: 117 QVMNPEARTWSTPEVTGCPPSPRTFHTSSAAIGNHLYVFGGGERGAQPVQDVKLHVFDAN 176
Query: 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292
+LTW G+ PSPR H A + L I GG + + +DL+ +D M W ++
Sbjct: 177 TLTWAQPETHGSPPSPRHGH-AMVAAGTKLFIHGGLAGDRFFDDLHCIDIGDMSWQKLGP 235
Query: 293 RGFHPSPRAGC 303
G P GC
Sbjct: 236 TGTAP---VGC 243
|
Rab9 effector required for endosome to trans-Golgi network (TGN) transport. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 694 | ||||||
| 359477427 | 717 | PREDICTED: uncharacterized protein LOC10 | 0.962 | 0.931 | 0.758 | 0.0 | |
| 225432358 | 706 | PREDICTED: uncharacterized protein LOC10 | 0.946 | 0.930 | 0.755 | 0.0 | |
| 255551677 | 713 | acyl-CoA binding protein, putative [Rici | 0.955 | 0.929 | 0.757 | 0.0 | |
| 224130424 | 707 | predicted protein [Populus trichocarpa] | 0.943 | 0.926 | 0.751 | 0.0 | |
| 356563867 | 708 | PREDICTED: acyl-CoA-binding domain-conta | 0.939 | 0.920 | 0.720 | 0.0 | |
| 449432819 | 678 | PREDICTED: acyl-CoA-binding domain-conta | 0.903 | 0.924 | 0.704 | 0.0 | |
| 356519992 | 711 | PREDICTED: acyl-CoA-binding domain-conta | 0.945 | 0.922 | 0.710 | 0.0 | |
| 224110584 | 663 | predicted protein [Populus trichocarpa] | 0.881 | 0.923 | 0.700 | 0.0 | |
| 357478641 | 743 | Acyl-CoA-binding domain-containing prote | 0.949 | 0.886 | 0.688 | 0.0 | |
| 357478643 | 735 | Acyl-CoA-binding domain-containing prote | 0.949 | 0.896 | 0.688 | 0.0 |
| >gi|359477427|ref|XP_003631976.1| PREDICTED: uncharacterized protein LOC100264848 isoform 2 [Vitis vinifera] gi|297736898|emb|CBI26099.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1021 bits (2639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/674 (75%), Positives = 569/674 (84%), Gaps = 6/674 (0%)
Query: 1 MFGFSRRRMKLGRVKKVQLSDSAQAIRSPIRPPKRNSNPNS-ECVAPSSNHADDRDCECT 59
MFGFSRRRMKLGR+K VQL+DSAQ RSPI+ KR SN N+ E +S +D+ +C+ +
Sbjct: 1 MFGFSRRRMKLGRLK-VQLADSAQGTRSPIKQSKRTSNTNNGESGGRASGQSDELNCQYS 59
Query: 60 IAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVL 119
PE +N T+G SENWMVLSIAGDKP PRFNHAAAVIGNKM+VVGGES NGLL+DVQVL
Sbjct: 60 SDAPEANNTTTGKSENWMVLSIAGDKPTPRFNHAAAVIGNKMVVVGGESENGLLEDVQVL 119
Query: 120 NFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 179
NFDRF+W+A SSK+YLSP+SLPLKIPAC+GHSL+SWG+KVLLVGGKT+ GS+RVSVW FD
Sbjct: 120 NFDRFTWSAPSSKIYLSPTSLPLKIPACKGHSLVSWGQKVLLVGGKTEPGSERVSVWAFD 179
Query: 180 TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL 239
ETECWS++EAKGDIPVARSGHTVVRASSVLILFGGED KRRKLNDLHMFDLKSLTWLPL
Sbjct: 180 IETECWSLMEAKGDIPVARSGHTVVRASSVLILFGGEDSKRRKLNDLHMFDLKSLTWLPL 239
Query: 240 HCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP 299
HCTGTGPSPRSNHVAALYDDK L IFGG SKS+TLNDLYSLDFETMIW+RIK + PSP
Sbjct: 240 HCTGTGPSPRSNHVAALYDDKILFIFGGGSKSRTLNDLYSLDFETMIWSRIKKKRGFPSP 299
Query: 300 RAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLV 359
RAGCCGVLCGTKWYIAGGGSRKKRHAETLI+D+LK EWSV I P+SS+T+NKGF+LVLV
Sbjct: 300 RAGCCGVLCGTKWYIAGGGSRKKRHAETLIYDVLKVEWSV-IAGPTSSITTNKGFSLVLV 358
Query: 360 QHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSSSTGLA 419
QHKEKDFLVAFGG KKEPSN+VEVL EKNE S+ RRST N KG L E RSSS GLA
Sbjct: 359 QHKEKDFLVAFGGTKKEPSNEVEVLIKEKNEVSISRRSTLN-KGSELFLSENRSSSAGLA 417
Query: 420 CQLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSEFALVDPNPISGNVSLGKQFQNEEE 479
QL NGAPQ V+SV RQNLASAIEQHGSGRKSLSE +LVDPNP GNVSL KQF NEEE
Sbjct: 418 SQLSNGAPQHPVESVMRQNLASAIEQHGSGRKSLSESSLVDPNPAPGNVSLRKQFHNEEE 477
Query: 480 YSTAVKMEKNSEDETSFVQTTENRKNQSDLGAQTSICVGKTNIDEAP-LFDYENSNPLVQ 538
Y+TAVK ++ EDE Q +E+R D G S+ K N+DE P + D ENSN Q
Sbjct: 478 YNTAVKTLRSLEDECYSSQASEHRMKLFDTGIHGSLAGCKINVDEIPSVLDSENSNAYNQ 537
Query: 539 GIGNFHVDNDNVIFPDND-KSGALSGPSSIYQFYESKMAALIRKNGILEGQLAAALVNRE 597
G GN VDND+ +FP++ KS A S PSSIYQ YE+KMAALIRKNGILEGQL AAL +RE
Sbjct: 538 GNGNLLVDNDDEVFPESHGKSVAFSAPSSIYQLYETKMAALIRKNGILEGQLTAALASRE 597
Query: 598 AAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEH 657
A EKN SSVLK+RQEMEKKLAD+LKEME+LKEKLAG+ELAQEEAN+LSN+VHSDNVRLEH
Sbjct: 598 AVEKNLSSVLKNRQEMEKKLADTLKEMEMLKEKLAGVELAQEEANNLSNMVHSDNVRLEH 657
Query: 658 DVAFLKAVLDDTQK 671
DVAFLKAVLDDTQK
Sbjct: 658 DVAFLKAVLDDTQK 671
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225432358|ref|XP_002275331.1| PREDICTED: uncharacterized protein LOC100264848 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1011 bits (2614), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/674 (75%), Positives = 567/674 (84%), Gaps = 17/674 (2%)
Query: 1 MFGFSRRRMKLGRVKKVQLSDSAQAIRSPIRPPKRNSNPNS-ECVAPSSNHADDRDCECT 59
MFGFSRRRMKLGR+K VQL+DSAQ RSPI+ KR SN N+ E +S +D+ +C+ +
Sbjct: 1 MFGFSRRRMKLGRLK-VQLADSAQGTRSPIKQSKRTSNTNNGESGGRASGQSDELNCQYS 59
Query: 60 IAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVL 119
PE +N T+G SENWMVLSIAGDKP PRFNHAAAVIGNKM+VVGGES NGLL+DVQVL
Sbjct: 60 SDAPEANNTTTGKSENWMVLSIAGDKPTPRFNHAAAVIGNKMVVVGGESENGLLEDVQVL 119
Query: 120 NFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 179
NFDRF+W+A SSK+YLSP+SLPLKIPAC+GHSL+SWG+KVLLVGGKT+ GS+RVSVW FD
Sbjct: 120 NFDRFTWSAPSSKIYLSPTSLPLKIPACKGHSLVSWGQKVLLVGGKTEPGSERVSVWAFD 179
Query: 180 TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL 239
ETECWS++EAKGDIPVARSGHTVVRASSVLILFGGED KRRKLNDLHMFDLKSLTWLPL
Sbjct: 180 IETECWSLMEAKGDIPVARSGHTVVRASSVLILFGGEDSKRRKLNDLHMFDLKSLTWLPL 239
Query: 240 HCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP 299
HCTGTGPSPRSNHVAALYDDK L IFGG SKS+TLNDLYSLDFETMIW+RIK + PSP
Sbjct: 240 HCTGTGPSPRSNHVAALYDDKILFIFGGGSKSRTLNDLYSLDFETMIWSRIKKKRGFPSP 299
Query: 300 RAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLV 359
RAGCCGVLCGTKWYIAGGGSRKKRHAETLI+D+LK EWSV I P+SS+T+NKGF+LVLV
Sbjct: 300 RAGCCGVLCGTKWYIAGGGSRKKRHAETLIYDVLKVEWSV-IAGPTSSITTNKGFSLVLV 358
Query: 360 QHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSSSTGLA 419
QHKEKDFLVAFGG KKEPSN+VEVL EKNE S+ RRST N KG L E RSSS GLA
Sbjct: 359 QHKEKDFLVAFGGTKKEPSNEVEVLIKEKNEVSISRRSTLN-KGSELFLSENRSSSAGLA 417
Query: 420 CQLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSEFALVDPNPISGNVSLGKQFQNEEE 479
QL NGAPQ V+SV RQNLASAIEQHGSGRKSLSE +LVDPNP GNVSL KQF NEEE
Sbjct: 418 SQLSNGAPQHPVESVMRQNLASAIEQHGSGRKSLSESSLVDPNPAPGNVSLRKQFHNEEE 477
Query: 480 YSTAVKMEKNSEDETSFVQTTENRKNQSDLGAQTSICVGKTNIDEAP-LFDYENSNPLVQ 538
Y+TAVK ++ EDE Q ++N T+ C K N+DE P + D ENSN Q
Sbjct: 478 YNTAVKTLRSLEDECYSSQVSDN---------STAGC--KINVDEIPSVLDSENSNAYNQ 526
Query: 539 GIGNFHVDNDNVIFPDND-KSGALSGPSSIYQFYESKMAALIRKNGILEGQLAAALVNRE 597
G GN VDND+ +FP++ KS A S PSSIYQ YE+KMAALIRKNGILEGQL AAL +RE
Sbjct: 527 GNGNLLVDNDDEVFPESHGKSVAFSAPSSIYQLYETKMAALIRKNGILEGQLTAALASRE 586
Query: 598 AAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEH 657
A EKN SSVLK+RQEMEKKLAD+LKEME+LKEKLAG+ELAQEEAN+LSN+VHSDNVRLEH
Sbjct: 587 AVEKNLSSVLKNRQEMEKKLADTLKEMEMLKEKLAGVELAQEEANNLSNMVHSDNVRLEH 646
Query: 658 DVAFLKAVLDDTQK 671
DVAFLKAVLDDTQK
Sbjct: 647 DVAFLKAVLDDTQK 660
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551677|ref|XP_002516884.1| acyl-CoA binding protein, putative [Ricinus communis] gi|223543972|gb|EEF45498.1| acyl-CoA binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1001 bits (2587), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/675 (75%), Positives = 575/675 (85%), Gaps = 12/675 (1%)
Query: 1 MFGFSRRRMKLGRVKKVQLSDSAQAIRSPIRPPKRNSNPNSECVAPSSNHADDRDCECTI 60
MF FS RRMKLGRVKKVQLSDSA RSPIRP KR +NPNSE VAP+++H+D+ DC+C
Sbjct: 1 MFSFSGRRMKLGRVKKVQLSDSALVTRSPIRPQKRTNNPNSEGVAPTTSHSDELDCQCPS 60
Query: 61 AGPEV-SNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVL 119
A PE S+ TSGNSENWMVLSIAGDKP PRFNHAA VIGNKMIVVGGESGNGLLDDVQVL
Sbjct: 61 APPETNSSTTSGNSENWMVLSIAGDKPTPRFNHAATVIGNKMIVVGGESGNGLLDDVQVL 120
Query: 120 NFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 179
NFD+F+WT SSKLYLSPSSLPLKIPAC+GHSL++WGKK LL+GGKTD +DR+SVW FD
Sbjct: 121 NFDQFTWTTISSKLYLSPSSLPLKIPACKGHSLVAWGKKALLIGGKTDPSTDRISVWAFD 180
Query: 180 TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL 239
TETECWS++EAKGD+PVARSGHTVVRASSVLILFGGED KRRKLNDLHMFDLKSLTWLPL
Sbjct: 181 TETECWSLLEAKGDVPVARSGHTVVRASSVLILFGGEDAKRRKLNDLHMFDLKSLTWLPL 240
Query: 240 HCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP 299
HCTGTGPSPR NHVAALYDDK LLIFGG+SKS+TLNDLYSLDFETM+W+RIKI+GFHPSP
Sbjct: 241 HCTGTGPSPRCNHVAALYDDKMLLIFGGTSKSRTLNDLYSLDFETMVWSRIKIQGFHPSP 300
Query: 300 RAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLV 359
RAGCCGVLCGTKWYI GGGSRKKRH+ETLIFDI+K EWSVA S SS+T NKGF+LVLV
Sbjct: 301 RAGCCGVLCGTKWYIGGGGSRKKRHSETLIFDIVKVEWSVAFASSPSSITINKGFSLVLV 360
Query: 360 QHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSSSTGLA 419
QHKEKDFLVAFGG KKEPSNQVEV+ ++K+E SM R+S KGPG LF KRSSST LA
Sbjct: 361 QHKEKDFLVAFGGSKKEPSNQVEVIGMDKSE-SMSRQSAA-GKGPGP-LFGKRSSSTALA 417
Query: 420 CQLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSEFALVDPNPISGNVSLGKQFQNEEE 479
QL G+ QRSVD++ARQNLAS +E HGSGRKSLSE LV+PN +SGNVSL KQF +EEE
Sbjct: 418 AQLNAGSSQRSVDTLARQNLASVVEHHGSGRKSLSE-TLVEPNSVSGNVSLRKQF-HEEE 475
Query: 480 YSTAVKMEKNSEDETSFVQTTENRKNQSDLGAQTSICVGKTNIDEAP-LFDYENSNPLVQ 538
+S AVKM KN ED + ++R NQSD QT+I +GK +E +FD ENS+ Q
Sbjct: 476 HSAAVKMAKNIEDGSFSSLAVDHRINQSDTSNQTNISIGKIIAEETSCVFDSENSHSQNQ 535
Query: 539 GIGNFHVDNDNVIF--PDNDKSGALSGPSSIYQFYESKMAALIRKNGILEGQLAAALVNR 596
G+ N V+N++ + PD GA SSIYQ YE+K+A+LIRKNG+LEGQLAAAL +R
Sbjct: 536 GVENHLVENEDALVSEPDGMTGGA---HSSIYQLYETKIASLIRKNGVLEGQLAAALASR 592
Query: 597 EAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLE 656
EAAEKN SSVLKSRQE+E+KL D+L+EMELLKEKLAG+ELAQEEANSLSNIVHSDNVRLE
Sbjct: 593 EAAEKNLSSVLKSRQEIERKLTDTLREMELLKEKLAGVELAQEEANSLSNIVHSDNVRLE 652
Query: 657 HDVAFLKAVLDDTQK 671
HDVAFLKAVLDDTQK
Sbjct: 653 HDVAFLKAVLDDTQK 667
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130424|ref|XP_002328605.1| predicted protein [Populus trichocarpa] gi|222838587|gb|EEE76952.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 999 bits (2582), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/676 (75%), Positives = 570/676 (84%), Gaps = 21/676 (3%)
Query: 1 MFGFSRRRMKLGRVKKVQLSDSAQAIRSPIRPPKR---NSNPNSECVAPSSNHADDRDCE 57
MFGFS+RRMKLGRVKKVQLSDS+ IRSPIRPPKR N+N NSE VA +++++DD D
Sbjct: 1 MFGFSKRRMKLGRVKKVQLSDSSPGIRSPIRPPKRIISNNNANSEGVALTASNSDDLDYH 60
Query: 58 CTIAGPEV-SNGTSGN-SENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDD 115
C+ + P V S+ T+GN +ENWMVLSI+GDKP PRFNHAA VIGNKMIVVGGESG+GLLDD
Sbjct: 61 CSSSAPPVISSSTAGNNAENWMVLSISGDKPNPRFNHAATVIGNKMIVVGGESGSGLLDD 120
Query: 116 VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175
VQVL FD+F+WT+ SSKLYLSPSSLPLKIPACRGH L+SWGKK LL+GGKTD SDR+SV
Sbjct: 121 VQVLKFDQFTWTSISSKLYLSPSSLPLKIPACRGHCLVSWGKKALLIGGKTDPASDRISV 180
Query: 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235
W FDTETECWS+VEAKGDIP+AR+GHTVVRASSVLILFGGED KR+KLNDLHMFDLKS T
Sbjct: 181 WAFDTETECWSLVEAKGDIPIARNGHTVVRASSVLILFGGEDAKRKKLNDLHMFDLKSFT 240
Query: 236 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF 295
WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGG+SKS+TLNDLYSLDFETM+W+R KIRGF
Sbjct: 241 WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGTSKSRTLNDLYSLDFETMVWSRTKIRGF 300
Query: 296 HPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFT 355
HPSPRAGCCGVLCGTKWYIAGGGSRKKRH+ETLI+DILK EWSVA SP SS+T+NKGF+
Sbjct: 301 HPSPRAGCCGVLCGTKWYIAGGGSRKKRHSETLIYDILKMEWSVAFASPPSSITTNKGFS 360
Query: 356 LVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSSS 415
LVLVQHKEKDFLVAFGG KKEPSNQVEV+ IEKNESS GR S +KGPG+LLFEKRSSS
Sbjct: 361 LVLVQHKEKDFLVAFGGSKKEPSNQVEVMGIEKNESSTGRHSAL-SKGPGRLLFEKRSSS 419
Query: 416 TGLACQLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSEFALVDPNPISGNVSLGKQFQ 475
T LA QLG G+ QRS DSVARQNLASAIEQHGSGRKSLS+ LVDPN S NVS K+F
Sbjct: 420 TVLAAQLGTGSSQRSADSVARQNLASAIEQHGSGRKSLSDSLLVDPNSASRNVSHRKEFH 479
Query: 476 NEEEYSTAVKMEKNSEDETSFVQTTENRKNQSDLGAQTSICVGKTNIDEAPLFDYENSNP 535
+EEE A K +N ED+ S + + V K N + + +F+ E N
Sbjct: 480 HEEENRIAAKTARNLEDDNS--------------SSPPNNPVSKINAEMSSIFEMETPNS 525
Query: 536 LVQGIGNFHVDNDNVIFPDNDKSGALSGPSSIYQFYESKMAALIRKNGILEGQLAAALVN 595
QGIGN VDN++V+ P++D + +SIYQ YE+K+AALIRKNGILEGQLAAAL
Sbjct: 526 HNQGIGNVSVDNEDVVSPESDCTTG-GARASIYQLYETKIAALIRKNGILEGQLAAALAG 584
Query: 596 REAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRL 655
REAAEKN SS+LKSRQEMEKKL DS++EMELLKEKLAG+ELAQEEANSLSNIVHSDNVRL
Sbjct: 585 REAAEKNLSSILKSRQEMEKKLVDSVREMELLKEKLAGVELAQEEANSLSNIVHSDNVRL 644
Query: 656 EHDVAFLKAVLDDTQK 671
EHDVAFLKAVLDDTQK
Sbjct: 645 EHDVAFLKAVLDDTQK 660
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563867|ref|XP_003550179.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 961 bits (2484), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/679 (72%), Positives = 557/679 (82%), Gaps = 27/679 (3%)
Query: 1 MFGFSRRRMKLGRVKKVQLSDSAQAIRSPIRPPKRNSNPNSECVAPSSNHADDRDCECTI 60
MFGFSRRRMKLGR+K VQLS++ R+P+RPPKRN + SS H+D+ DC+
Sbjct: 1 MFGFSRRRMKLGRLK-VQLSEANPGTRTPVRPPKRNGTEIGDAAGGSSGHSDEVDCQ--- 56
Query: 61 AGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLN 120
P + G+SENWMVLSIAGDKPIPR NHAAAVIGNKMIVVGGESG GLLDDVQVLN
Sbjct: 57 --PSTEITSCGSSENWMVLSIAGDKPIPRSNHAAAVIGNKMIVVGGESGTGLLDDVQVLN 114
Query: 121 FDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 180
FDRFSWT ASSKLYLSPSSLPLKIPAC+GHSL+SWGKK LL+GGKTD GSDR+SVW FDT
Sbjct: 115 FDRFSWTTASSKLYLSPSSLPLKIPACKGHSLVSWGKKALLIGGKTDPGSDRISVWAFDT 174
Query: 181 ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 240
ETECWS++EAKGDIPVARSGH+VVRASSVLILFGGED KRRKLNDLHMFDLKSLTWLPLH
Sbjct: 175 ETECWSLMEAKGDIPVARSGHSVVRASSVLILFGGEDAKRRKLNDLHMFDLKSLTWLPLH 234
Query: 241 CTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPR 300
TGT PSPR NHVAALYDDK L IFGGSSKS+TLNDLYSLDFETM W+R+K+RGFHPSPR
Sbjct: 235 YTGTAPSPRFNHVAALYDDKILYIFGGSSKSRTLNDLYSLDFETMAWSRVKMRGFHPSPR 294
Query: 301 AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQ 360
AGCCGVLCGTKWYI GGGSRKKRH ET+IFDI+K EWSVAITSP SS+T+NKGF++VLVQ
Sbjct: 295 AGCCGVLCGTKWYITGGGSRKKRHGETVIFDIVKNEWSVAITSPPSSITTNKGFSMVLVQ 354
Query: 361 HKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSSSTGLAC 420
HKEKDFLVAFGG KKEPSNQVEVL +EKNES++GR+S P +K +L EK SSST LA
Sbjct: 355 HKEKDFLVAFGGSKKEPSNQVEVLIMEKNESALGRQSAP-SKCSASVLLEKHSSSTRLAP 413
Query: 421 QLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSEFALVDPNPISGNVSLGKQFQNEEEY 480
QL N QR VDSVARQNLASAIE HGSGR+SLSE +VDPN N SL KQF ++EEY
Sbjct: 414 QL-NDCSQRLVDSVARQNLASAIE-HGSGRRSLSESLVVDPNFPPTNTSLRKQFDHDEEY 471
Query: 481 STAVKMEKNSEDETSFVQTTENRKNQSDLGAQTSICVGKTNIDEAPLFDYENSNPLVQGI 540
+T +KM+KNS DE SF + ++R N++D G Q + G NI E L+ GI
Sbjct: 472 NTDLKMDKNS-DENSFPRAVDHRTNENDHGKQMN-SSGAKNIT-------EEQQALLSGI 522
Query: 541 G--------NFHVDNDNVIFPDNDKSGALSGPSSIYQFYESKMAALIRKNGILEGQLAAA 592
N +++DNV F +N KSG+L+ S++Y YESK+A+LIRKNGILEGQLAA+
Sbjct: 523 PIQQNLVFENDMLESDNVSFTENIKSGSLT-TSNVYHCYESKLASLIRKNGILEGQLAAS 581
Query: 593 LVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDN 652
L ++EAAEK+ +SVLKSRQEME+KLA+S KEMEL++EKL LELAQEEAN+LSNIVHSDN
Sbjct: 582 LASKEAAEKSLASVLKSRQEMERKLAESHKEMELMREKLTSLELAQEEANNLSNIVHSDN 641
Query: 653 VRLEHDVAFLKAVLDDTQK 671
VRLEHDVAFLKAVLDDTQK
Sbjct: 642 VRLEHDVAFLKAVLDDTQK 660
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432819|ref|XP_004134196.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Cucumis sativus] gi|449529842|ref|XP_004171907.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/676 (70%), Positives = 547/676 (80%), Gaps = 49/676 (7%)
Query: 1 MFGFSRRRMKLGRVKKVQLSDSAQAIRSPIRPPKRNSNPNSECVAPSSNHADDRDCECTI 60
MFGF RRRMKLGR+K VQLSD AQ RSPIR PKR S NSEC AP+S H+++ D E
Sbjct: 1 MFGF-RRRMKLGRLK-VQLSDPAQGTRSPIRNPKRGSGSNSECAAPASRHSEEHD-EGQR 57
Query: 61 AG--PEVSN-GTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQ 117
A P++SN G SG SENWMVLSIAG+KP PRFNHAA VIGNKMIVVGGESG+GLLDDVQ
Sbjct: 58 ASDVPDISNNGASGQSENWMVLSIAGEKPAPRFNHAATVIGNKMIVVGGESGSGLLDDVQ 117
Query: 118 VLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177
VLNFD+F+WT ASSKLYLSPSSLPLKIPAC+GHSL+SWGKK LLVGGKT+ G++RV+VW
Sbjct: 118 VLNFDKFTWTRASSKLYLSPSSLPLKIPACKGHSLVSWGKKALLVGGKTEPGNERVAVWA 177
Query: 178 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL 237
FDTETECWS++EAKGDIPVARSGHTVVRASSVLILFGGED +R+KLNDLHMFDLKS TWL
Sbjct: 178 FDTETECWSLMEAKGDIPVARSGHTVVRASSVLILFGGEDSRRKKLNDLHMFDLKSFTWL 237
Query: 238 PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP 297
PLHCTGTGPS RSNH+AALYDDK LLIFGG+SKS+TLNDLYSLDFETM+W+RIK+RGFHP
Sbjct: 238 PLHCTGTGPSARSNHLAALYDDKTLLIFGGTSKSRTLNDLYSLDFETMVWSRIKVRGFHP 297
Query: 298 SPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLV 357
SPRAGCCGVLCGTKW IAGGGSRKKRHA+TLIFDILK EWSVA+TSP SSVT+NKGF+LV
Sbjct: 298 SPRAGCCGVLCGTKWCIAGGGSRKKRHADTLIFDILKLEWSVALTSPPSSVTTNKGFSLV 357
Query: 358 LVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSSSTG 417
LVQHKEKDFL+AFGG KKEPSNQVEVL++EK E S+ RS P
Sbjct: 358 LVQHKEKDFLLAFGGSKKEPSNQVEVLTMEKKEPSLRHRSNP------------------ 399
Query: 418 LACQLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSEFALVDPNPISGNVSLGKQFQNE 477
+DS ARQNLASAIE HGSGRKS+SE +LVDPNPI GN+SL KQF N+
Sbjct: 400 -------------IDSTARQNLASAIE-HGSGRKSISETSLVDPNPIPGNISLRKQFHND 445
Query: 478 EEYSTAVKMEKNSEDETSFVQTTENRKNQSDLGAQTSICVGKTNIDEAP-LFDYENSNPL 536
E + K+ K +ED++S Q TEN+ QS G+ + + P +++YE+SNP
Sbjct: 446 ESFDKTTKIAKTAEDDSSTSQVTENKLTQSG---------GEFHGETLPSVYEYESSNPF 496
Query: 537 VQGIGNFH-VDNDNVIFPDNDKSGALSGPSSIYQFYESKMAALIRKNGILEGQLAAALVN 595
+G+G H +DN ++ + K S SSIYQFYE+KMAALIRKNG+LEGQLAAA +
Sbjct: 497 KEGVGYHHPIDNTDLFSESSGKIVTSSTFSSIYQFYEAKMAALIRKNGVLEGQLAAATAS 556
Query: 596 REAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRL 655
REA EKN SS LK RQEMEK++AD +KEME+L++KLAG+E+A+EEANSLSNIVHSDNVRL
Sbjct: 557 REAVEKNLSSALKIRQEMEKRIADMIKEMEMLRDKLAGVEIAKEEANSLSNIVHSDNVRL 616
Query: 656 EHDVAFLKAVLDDTQK 671
EHDVAFLKAVLDDTQK
Sbjct: 617 EHDVAFLKAVLDDTQK 632
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519992|ref|XP_003528652.1| PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2422), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/677 (71%), Positives = 554/677 (81%), Gaps = 21/677 (3%)
Query: 1 MFGFSRRRMKLGRVKKVQLSDSAQAIRSPIRPPKRNSNPNSECVAPSSNHADDRDCECTI 60
MFG SRRRMKLGR+K VQLS++ R+PIR PKRN N N + SS H+D+ DC+ +
Sbjct: 1 MFGISRRRMKLGRLK-VQLSEANPGTRTPIRHPKRNGNSNGDA-GGSSGHSDEVDCQPS- 57
Query: 61 AGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLN 120
+ TSG+SENWMVLSIAGDKP PR NHAAAVIGNKMIVVGGESG GLLDDVQVL
Sbjct: 58 -----TEITSGSSENWMVLSIAGDKPTPRSNHAAAVIGNKMIVVGGESGTGLLDDVQVLT 112
Query: 121 FDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 180
FDRFSWT ASSKLYLSPSSLPLKIPAC+GHSL+SWGKK LL+GGKTD GSDR+SVW FDT
Sbjct: 113 FDRFSWTMASSKLYLSPSSLPLKIPACKGHSLVSWGKKALLIGGKTDPGSDRISVWAFDT 172
Query: 181 ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 240
ETECWS++EAKGDIPVARSGH+VVRASSVLILFGGED KRRKLNDLHMFDLKSLTWLPLH
Sbjct: 173 ETECWSLMEAKGDIPVARSGHSVVRASSVLILFGGEDAKRRKLNDLHMFDLKSLTWLPLH 232
Query: 241 CTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPR 300
TGT PSPR NHVAALYDDK L IFGGSSKS+TLNDLYSLDFETM W+R+KIRGFHPSPR
Sbjct: 233 YTGTAPSPRFNHVAALYDDKILYIFGGSSKSRTLNDLYSLDFETMAWSRVKIRGFHPSPR 292
Query: 301 AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQ 360
AGCC VLCGTKWYI GGGSRKKRH ET+IFDI+K EWSVAITSP SS+T+NKGF++VLVQ
Sbjct: 293 AGCCDVLCGTKWYITGGGSRKKRHGETVIFDIVKNEWSVAITSPPSSITTNKGFSMVLVQ 352
Query: 361 HKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSSSTGLAC 420
HKEKDFLVAFGG KKEPSNQVEVL +EKNES++G +S ++K +L EK SSST LA
Sbjct: 353 HKEKDFLVAFGGSKKEPSNQVEVLIMEKNESTLGSQSA-HSKCSASVLLEKHSSSTRLAP 411
Query: 421 QLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSEFALVDPNPISGNVSLGKQFQNEEEY 480
QL N Q VDSVARQNLASAIE HGSGR+SLSE ++DPN N SL KQF ++EEY
Sbjct: 412 QL-NDCSQHLVDSVARQNLASAIE-HGSGRRSLSESLVIDPNFPPTNTSLRKQFDHDEEY 469
Query: 481 STAVKMEKNSEDETSFVQTTENRKNQSDLGAQTSICVGKTNIDEAP--LFDYENSNPLVQ 538
+T +KM+KNS DE SF + ++R N+ G Q + KTN++E L N LV
Sbjct: 470 NTDLKMDKNS-DERSFPRAVDHRTNKDYHGKQMNTSEVKTNMEEQQTLLSGILNQQNLV- 527
Query: 539 GIGNFHVDNDNVIFPD----NDKSGALSGPSSIYQFYESKMAALIRKNGILEGQLAAALV 594
N ++DN++F + N SG+L+ S++Y +YESK+A+LIRKNGILEGQLAA++
Sbjct: 528 -FENDMPESDNLLFSENINININSGSLT-TSNVYYYYESKLASLIRKNGILEGQLAASIA 585
Query: 595 NREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVR 654
++EAAEK+ +SVLKSRQEM++KL +S KEMEL++EKLAGLELAQEE N+LSNIVHSDNVR
Sbjct: 586 SKEAAEKSLTSVLKSRQEMDRKLTESEKEMELMREKLAGLELAQEETNNLSNIVHSDNVR 645
Query: 655 LEHDVAFLKAVLDDTQK 671
LEHDVAFLKAVLDDTQK
Sbjct: 646 LEHDVAFLKAVLDDTQK 662
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110584|ref|XP_002315566.1| predicted protein [Populus trichocarpa] gi|222864606|gb|EEF01737.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/675 (70%), Positives = 529/675 (78%), Gaps = 63/675 (9%)
Query: 1 MFGFSRRRMKLGRVKKVQLSDSAQAIRSPIRPPKR---NSNPNSECVAPSSNHADDRDCE 57
MFGFS+RR KLGRVKKVQLSDS IRSPIRPPKR ++N NSE VA ++N++D+ D
Sbjct: 1 MFGFSKRRTKLGRVKKVQLSDSTPGIRSPIRPPKRIISSNNANSEGVALTTNNSDELDYN 60
Query: 58 CTIAGP-EVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDV 116
C+ + P ++S TSGN+ENWMVLSI+GD+P PRFNHAA VIGNKMIVVGG+SG+GLLDDV
Sbjct: 61 CSSSAPLDISASTSGNAENWMVLSISGDEPTPRFNHAATVIGNKMIVVGGDSGSGLLDDV 120
Query: 117 QVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVW 176
QVL FD+F+WT SSKLYLSPSSLPLKIPACRGH L+SWGKK LL+GGKTD SDR+SVW
Sbjct: 121 QVLKFDQFTWTTISSKLYLSPSSLPLKIPACRGHCLVSWGKKALLIGGKTDPASDRISVW 180
Query: 177 TFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW 236
F TETECWS++EAKGDIP+AR GHTVVRASSVLILFGGED KR+KLNDLHMFDLKS TW
Sbjct: 181 AFHTETECWSIIEAKGDIPIARCGHTVVRASSVLILFGGEDAKRKKLNDLHMFDLKSFTW 240
Query: 237 LPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFH 296
LPLHCTGTGPSPR+NHVAALYDDK LLIFGG+SKS+TLNDLYSLDFETM+W+R KIRGFH
Sbjct: 241 LPLHCTGTGPSPRTNHVAALYDDKILLIFGGTSKSRTLNDLYSLDFETMVWSRTKIRGFH 300
Query: 297 PSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTL 356
PSPRAGCCGVLCGTKWYIAGGG+RKKRH+ET IFDILK EWSVA SPSSS+T+NKGF+L
Sbjct: 301 PSPRAGCCGVLCGTKWYIAGGGTRKKRHSETFIFDILKVEWSVAFPSPSSSITTNKGFSL 360
Query: 357 VLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSSST 416
VLVQHKEKDFLVAFGG KKEPSNQVEV+ IEKNESSMGR S P ++GP LL EK SSST
Sbjct: 361 VLVQHKEKDFLVAFGGSKKEPSNQVEVMGIEKNESSMGRHSAP-SEGPRNLLLEKCSSST 419
Query: 417 GLACQLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSEFALVDPNPISGNVSLGKQFQN 476
LA QLG G+ Q SVDS+ RQNL SAIEQHGSGRKSLSE LVDPN SGNVS K F +
Sbjct: 420 VLADQLGTGSSQHSVDSITRQNLVSAIEQHGSGRKSLSESLLVDPNSASGNVSRRKDFHH 479
Query: 477 EEEYSTAVKMEKNSEDETSFVQTTENRKNQSDLGAQTSICVGKTNIDEAPLFDYENSNPL 536
+EE +TA K KN +
Sbjct: 480 KEENTTAAKTAKNLD--------------------------------------------- 494
Query: 537 VQGIGNFHVDNDNVIFPDNDKSGALSGPSSIYQFYESKMAALIRKNGILEGQLAAALVNR 596
GNF D GA + +Y E+K+AAL RKN +LEGQLAAA + R
Sbjct: 495 ----GNF------ASLSDCTTGGARASIYRLY---ETKIAALTRKNRVLEGQLAAAFIGR 541
Query: 597 EAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLE 656
EAAEKN SS LKSRQEMEKKL D+++EMELLKEKLA +ELAQEEANSLSNIVHSDN+RLE
Sbjct: 542 EAAEKNVSSALKSRQEMEKKLVDTVREMELLKEKLACVELAQEEANSLSNIVHSDNLRLE 601
Query: 657 HDVAFLKAVLDDTQK 671
HDVAFLKAVLDDTQK
Sbjct: 602 HDVAFLKAVLDDTQK 616
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357478641|ref|XP_003609606.1| Acyl-CoA-binding domain-containing protein [Medicago truncatula] gi|355510661|gb|AES91803.1| Acyl-CoA-binding domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/707 (68%), Positives = 556/707 (78%), Gaps = 48/707 (6%)
Query: 1 MFGFSRRRMKLGRVKKVQLSDSAQAIRSPI--RPPKR--NSNPNSE--------CVAPSS 48
MFGFSRRR K GR K QLSD RSP+ R PKR NS N E V SS
Sbjct: 1 MFGFSRRRTKFGRFKVQQLSD---GTRSPVSVRHPKRIPNSILNGEGEEDGIGDAVTGSS 57
Query: 49 NHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGES 108
H+ + D E ++ ++S+ +SG SENW++LSI+GDKP PRFNHAAAVIGNK+IVVGGES
Sbjct: 58 GHSHEIDNEI-VSSTDISSCSSGGSENWVLLSISGDKPAPRFNHAAAVIGNKIIVVGGES 116
Query: 109 GNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDS 168
GLLDDVQVLNF+ FSWT ASSKLYLSPSSLPLKIPAC+GHSL+S+GKK LL+GGKTD
Sbjct: 117 STGLLDDVQVLNFETFSWTTASSKLYLSPSSLPLKIPACKGHSLVSYGKKALLIGGKTDP 176
Query: 169 GSDRVS------------------------VWTFDTETECWSVVEAKGDIPVARSGHTVV 204
GSDR+S VW FDTE+ECWS++EAKGDIPVAR+GH+VV
Sbjct: 177 GSDRISGSIRGLLMYISRCEVALIIFLVFAVWAFDTESECWSLMEAKGDIPVARNGHSVV 236
Query: 205 RASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLI 264
RASS LILFGGED KRRKLNDLHMFDLKSLTWLPLH TGT PSPR NHVAALYDDK L I
Sbjct: 237 RASSYLILFGGEDAKRRKLNDLHMFDLKSLTWLPLHYTGTAPSPRLNHVAALYDDKVLYI 296
Query: 265 FGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRH 324
FGGSSKSKTLNDLYSLDFETM W+R+K+RGFHPSPRAGCCGVLCGTKWYI GGGS+KKRH
Sbjct: 297 FGGSSKSKTLNDLYSLDFETMAWSRVKVRGFHPSPRAGCCGVLCGTKWYITGGGSKKKRH 356
Query: 325 AETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 384
ETLIFDI+K EWSVAITSP SS+T+NKGF+LVLVQ+KEKD+LVAFGG KKEPSNQVEVL
Sbjct: 357 GETLIFDIVKNEWSVAITSPPSSITTNKGFSLVLVQYKEKDYLVAFGGSKKEPSNQVEVL 416
Query: 385 SIEKNESSMGRRSTPNAKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAIE 444
++KNES++ RRSTP +KGP +L EK SSST LA QL N QR VDSVARQNLASA+E
Sbjct: 417 ELDKNESALRRRSTP-SKGPASILLEKHSSSTRLASQL-NHCSQRLVDSVARQNLASAVE 474
Query: 445 QHGSGRKSLSEFALVDPNPISGNVSLGKQFQNEEEYSTAVKMEKNSEDETSFVQTTENRK 504
HGSGRKSLSE VDPN NVSL KQF +EEY+ VKM+KNS D +S Q ++R
Sbjct: 475 -HGSGRKSLSES--VDPNYPPSNVSLRKQFDRDEEYNADVKMDKNS-DGSSLPQVADHRT 530
Query: 505 NQSDLGAQTSICVGKTNIDEAPLFDYENSNPLVQGIGNFHVDNDNVIFPDNDKSGALSGP 564
N++D +I K NI+ L SN Q + ++++ V FP+NDKSG+LS
Sbjct: 531 NENDRRKLMNISGAKVNIEGQVLLS-GMSNQQNQVFESDALESEVVSFPENDKSGSLSS- 588
Query: 565 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEM 624
++IYQ+YESK+AALIRKNG+LEGQLAA++ +REAAEK SSV KSRQEMEKKLAD+LKEM
Sbjct: 589 TNIYQYYESKVAALIRKNGMLEGQLAASMASREAAEKGLSSVHKSRQEMEKKLADALKEM 648
Query: 625 ELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 671
ELL+EKLAGLELAQEEAN+LSNIVHSDNVRLEHDVAFLKAVLDDTQK
Sbjct: 649 ELLREKLAGLELAQEEANNLSNIVHSDNVRLEHDVAFLKAVLDDTQK 695
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357478643|ref|XP_003609607.1| Acyl-CoA-binding domain-containing protein [Medicago truncatula] gi|355510662|gb|AES91804.1| Acyl-CoA-binding domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/707 (68%), Positives = 556/707 (78%), Gaps = 48/707 (6%)
Query: 1 MFGFSRRRMKLGRVKKVQLSDSAQAIRSPI--RPPKR--NSNPNSE--------CVAPSS 48
MFGFSRRR K GR K QLSD RSP+ R PKR NS N E V SS
Sbjct: 1 MFGFSRRRTKFGRFKVQQLSD---GTRSPVSVRHPKRIPNSILNGEGEEDGIGDAVTGSS 57
Query: 49 NHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGES 108
H+ + D E ++ ++S+ +SG SENW++LSI+GDKP PRFNHAAAVIGNK+IVVGGES
Sbjct: 58 GHSHEIDNEI-VSSTDISSCSSGGSENWVLLSISGDKPAPRFNHAAAVIGNKIIVVGGES 116
Query: 109 GNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDS 168
GLLDDVQVLNF+ FSWT ASSKLYLSPSSLPLKIPAC+GHSL+S+GKK LL+GGKTD
Sbjct: 117 STGLLDDVQVLNFETFSWTTASSKLYLSPSSLPLKIPACKGHSLVSYGKKALLIGGKTDP 176
Query: 169 GSDRVS------------------------VWTFDTETECWSVVEAKGDIPVARSGHTVV 204
GSDR+S VW FDTE+ECWS++EAKGDIPVAR+GH+VV
Sbjct: 177 GSDRISGSIRGLLMYISRCEVALIIFLVFAVWAFDTESECWSLMEAKGDIPVARNGHSVV 236
Query: 205 RASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLI 264
RASS LILFGGED KRRKLNDLHMFDLKSLTWLPLH TGT PSPR NHVAALYDDK L I
Sbjct: 237 RASSYLILFGGEDAKRRKLNDLHMFDLKSLTWLPLHYTGTAPSPRLNHVAALYDDKVLYI 296
Query: 265 FGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRH 324
FGGSSKSKTLNDLYSLDFETM W+R+K+RGFHPSPRAGCCGVLCGTKWYI GGGS+KKRH
Sbjct: 297 FGGSSKSKTLNDLYSLDFETMAWSRVKVRGFHPSPRAGCCGVLCGTKWYITGGGSKKKRH 356
Query: 325 AETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVL 384
ETLIFDI+K EWSVAITSP SS+T+NKGF+LVLVQ+KEKD+LVAFGG KKEPSNQVEVL
Sbjct: 357 GETLIFDIVKNEWSVAITSPPSSITTNKGFSLVLVQYKEKDYLVAFGGSKKEPSNQVEVL 416
Query: 385 SIEKNESSMGRRSTPNAKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAIE 444
++KNES++ RRSTP +KGP +L EK SSST LA QL N QR VDSVARQNLASA+E
Sbjct: 417 ELDKNESALRRRSTP-SKGPASILLEKHSSSTRLASQL-NHCSQRLVDSVARQNLASAVE 474
Query: 445 QHGSGRKSLSEFALVDPNPISGNVSLGKQFQNEEEYSTAVKMEKNSEDETSFVQTTENRK 504
HGSGRKSLSE VDPN NVSL KQF +EEY+ VKM+KNS D +S Q ++R
Sbjct: 475 -HGSGRKSLSES--VDPNYPPSNVSLRKQFDRDEEYNADVKMDKNS-DGSSLPQVADHRT 530
Query: 505 NQSDLGAQTSICVGKTNIDEAPLFDYENSNPLVQGIGNFHVDNDNVIFPDNDKSGALSGP 564
N++D +I K NI+ L SN Q + ++++ V FP+NDKSG+LS
Sbjct: 531 NENDRRKLMNISGAKVNIEGQVLLS-GMSNQQNQVFESDALESEVVSFPENDKSGSLSS- 588
Query: 565 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEM 624
++IYQ+YESK+AALIRKNG+LEGQLAA++ +REAAEK SSV KSRQEMEKKLAD+LKEM
Sbjct: 589 TNIYQYYESKVAALIRKNGMLEGQLAASMASREAAEKGLSSVHKSRQEMEKKLADALKEM 648
Query: 625 ELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 671
ELL+EKLAGLELAQEEAN+LSNIVHSDNVRLEHDVAFLKAVLDDTQK
Sbjct: 649 ELLREKLAGLELAQEEANNLSNIVHSDNVRLEHDVAFLKAVLDDTQK 695
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 694 | ||||||
| TAIR|locus:2183008 | 708 | AT5G18590 [Arabidopsis thalian | 0.940 | 0.922 | 0.604 | 1.8e-206 | |
| TAIR|locus:2143676 | 648 | ACBP5 "acyl-CoA binding protei | 0.616 | 0.660 | 0.307 | 9.6e-57 | |
| TAIR|locus:2184352 | 514 | AT5G04420 [Arabidopsis thalian | 0.459 | 0.620 | 0.338 | 1.2e-51 | |
| UNIPROTKB|Q5EA50 | 372 | RABEPK "Rab9 effector protein | 0.354 | 0.661 | 0.290 | 3.8e-24 | |
| MGI|MGI:2139530 | 380 | Rabepk "Rab9 effector protein | 0.354 | 0.647 | 0.294 | 1.3e-23 | |
| RGD|1310612 | 372 | Rabepk "Rab9 effector protein | 0.354 | 0.661 | 0.290 | 5.9e-23 | |
| UNIPROTKB|F1SKQ3 | 370 | RABEPK "Uncharacterized protei | 0.354 | 0.664 | 0.283 | 1e-21 | |
| UNIPROTKB|Q7Z6M1 | 372 | RABEPK "Rab9 effector protein | 0.354 | 0.661 | 0.283 | 3.3e-21 | |
| DICTYBASE|DDB_G0270750 | 485 | DDB_G0270750 "Kelch repeat-con | 0.348 | 0.498 | 0.287 | 5.1e-21 | |
| WB|WBGene00001827 | 782 | hcf-1 [Caenorhabditis elegans | 0.353 | 0.313 | 0.294 | 4.5e-20 |
| TAIR|locus:2183008 AT5G18590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1997 (708.0 bits), Expect = 1.8e-206, P = 1.8e-206
Identities = 411/680 (60%), Positives = 498/680 (73%)
Query: 1 MFGFSRRRMKLGRVKKVQLSDSAQAIRSPIRPPKRNSNPNSECVAPSSNHADDRDCECTI 60
MF FS+RRM+LGRVKKVQLSDS Q +SP+R KR + ++E +++++D+ D +
Sbjct: 1 MFSFSKRRMRLGRVKKVQLSDSVQGYKSPLRVTKRADSSSNEAAVAATSYSDELDFQ--- 57
Query: 61 AGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLN 120
P +SGNSENWMVLS+ G+KP PRFNHAAA IGNKMIVVGGESG+GLLDDVQVLN
Sbjct: 58 --P-----SSGNSENWMVLSVNGEKPAPRFNHAAATIGNKMIVVGGESGSGLLDDVQVLN 110
Query: 121 FDRFSWTAAXXXXXXXXXXXXXXIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 180
FD +W+ A IPA +GH L+SWGKKVLLVGGKTD SDRVSVW FDT
Sbjct: 111 FDSCTWSTASSKVYLSPSSLPLMIPAWKGHCLVSWGKKVLLVGGKTDPSSDRVSVWAFDT 170
Query: 181 ETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 240
++ECWS+++AKGD+PV+RSGHTVVRASSVLILFGGED K+RKLNDLHMFDLKS TWLPL+
Sbjct: 171 DSECWSLMDAKGDLPVSRSGHTVVRASSVLILFGGEDSKKRKLNDLHMFDLKSSTWLPLN 230
Query: 241 CTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPR 300
CTGT P RS+HVA L+DDK L +FGGS K+KTLNDLYSLDFETM+W+RIKIRGFHPSPR
Sbjct: 231 CTGTRPCARSHHVATLFDDKILFVFGGSGKNKTLNDLYSLDFETMVWSRIKIRGFHPSPR 290
Query: 301 AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQ 360
AG CGVLCGTKWYI GGGSRKKRHAETL+FDILK EWSVA S SSVTSNKGF+LVL+Q
Sbjct: 291 AGSCGVLCGTKWYITGGGSRKKRHAETLVFDILKVEWSVASISSQSSVTSNKGFSLVLLQ 350
Query: 361 HKEKDFLVAFGGIKKEPSNQVEVLSIEKNES-SMGRRSTPNAKGPGQLLFEKRSSSTGLA 419
HK+KDFLVAFGG KK+PSNQV+ +I+KN+S S T + K PG+LLF KRSSS+ +
Sbjct: 351 HKDKDFLVAFGGTKKDPSNQVDAFTIDKNKSESPTHPQTTSKKNPGRLLFGKRSSSSAVL 410
Query: 420 C--QLGNGAPQRSVDSVARQNLASAIEQHG-SGRKSLSEFALVDP-NPISGNVSLGKQFQ 475
+ + QR +DSVARQ LASAIE+HG SGR+SLSE A D NP SGNVSL KQF
Sbjct: 411 TSDESVKASSQRLIDSVARQKLASAIEEHGGSGRRSLSEIAFGDHRNPPSGNVSLRKQFS 470
Query: 476 NEEEYSTAVKMEKNSEDETSFVQ-TTENRKNQSDLGAQTSICVGKTNIDEAPLFDYENSN 534
EEEY ++ K SE++ S TT++ + + A+ ++ + + + + +
Sbjct: 471 TEEEYRAVIEPAKCSEEDISVPPPTTDDNTGGAKITAEKTLSM----VSDREILSLQKQC 526
Query: 535 PLVQGIGNFHVDNDNVIFPDNDK---SGALSGPSSIYQFYESKMAALIRKNGILEGQLAA 591
+ N VD +IF + D +G+ S SS+YQF+E+KM ALIR+NGILEGQL A
Sbjct: 527 SETYPLEN--VDGA-LIFQEMDNINFAGSASS-SSVYQFHEAKMTALIRRNGILEGQLEA 582
Query: 592 ALVNREAAEKNFSSVLKSRQEMEKKLADSXXXXXXXXXXXXXXXXXXXXXNSLSNIVHSD 651
AL REAAE+N S L+S+QE +KKL+D+ NSLSN+VHSD
Sbjct: 583 ALAGREAAERNVSVALRSKQETDKKLSDAMRDVELLKEKLTGLELAQEEANSLSNMVHSD 642
Query: 652 NVRLEHDVAFLKAVLDDTQK 671
NVRLEHDVAFLKAVLDDTQK
Sbjct: 643 NVRLEHDVAFLKAVLDDTQK 662
|
|
| TAIR|locus:2143676 ACBP5 "acyl-CoA binding protein 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 137/446 (30%), Positives = 226/446 (50%)
Query: 76 WMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAAXXXXXX 135
W +G P R+ H AAVI +KM + GG L D+ VL+ ++W+
Sbjct: 172 WTAPRTSGQPPKARYQHGAAVIQDKMYMYGGNHNGRYLGDLHVLDLKNWTWSRVETKVVT 231
Query: 136 XXXXXXX--XIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 193
+ C GHSLI W ++L +GG T S+ + V FD WS+++ G
Sbjct: 232 GSQETSSPAKLTHCAGHSLIPWDNQLLSIGGHTKDPSESMPVMVFDLHCCSWSILKTYGK 291
Query: 194 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253
P++R G +V L++FGG+D KR LNDLH+ DL ++TW + G+ P+PRS+H
Sbjct: 292 PPISRGGQSVTLVGKSLVIFGGQDAKRSLLNDLHILDLDTMTWEEIDAVGSPPTPRSDHA 351
Query: 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWY 313
AA++ ++ LLIFGG S + +DL+ LD +TM W+R +G P+PRAG GV G WY
Sbjct: 352 AAVHAERYLLIFGGGSHATCFDDLHVLDLQTMEWSRHTQQGDAPTPRAGHAGVTIGENWY 411
Query: 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVT-SNKGFTLVLVQHKEKDFLVAFGG 372
I GGG K ++T++ ++ WSV +TS V +++G +LV+ + +D +VAFGG
Sbjct: 412 IVGGGDNKSGASKTVVLNMSTLAWSV-VTSVQEHVPLASEGLSLVVSSYNGEDIVVAFGG 470
Query: 373 IKKEPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSSSTGLACQLG-NGAPQRSV 431
+N+V VL ++SS+ + + P +++ + ++ G R +
Sbjct: 471 YNGHYNNEVNVLK-PSHKSSLKSKIMGASAVPDSFSAVNNATTRDIESEIKVEGKADRII 529
Query: 432 DSVA--RQNLASAIEQHGSGRKSLSE-FALVDPNPISGNVSLGKQFQ---NE--EEYSTA 483
++ ++ + +++ + L E A +D N L K+ Q N+ E S
Sbjct: 530 TTLKSEKEEVEASLNKEKIQTLQLKEELAEIDTR----NTELYKELQSVRNQLAAEQSRC 585
Query: 484 VKMEKNSEDETSFVQTTENRKNQSDL 509
K+E + +QT E + + +L
Sbjct: 586 FKLEVEVAELRQKLQTMETLQKELEL 611
|
|
| TAIR|locus:2184352 AT5G04420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 111/328 (33%), Positives = 173/328 (52%)
Query: 74 ENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTA----- 128
+ W L ++G + R+ HAA V+ K+ +VGG L DVQV + +W++
Sbjct: 20 DEWTPLPVSGSRASARYKHAAVVVDEKLYIVGGSRNGRYLSDVQVFDLRSLTWSSLKLKT 79
Query: 129 ----AXXXXXXXXXXXXXXIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC 184
A PA H +I WG K+LL+GG + SD + V D ET
Sbjct: 80 ESSSADNIQEDDGSSLREAFPAISDHRMIKWGNKLLLIGGHSKKSSDNMLVRFIDLETHS 139
Query: 185 WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGT 244
V++ G++P +R GH++ S +++FGGED RR LNDLH+ L+++TW + T
Sbjct: 140 CGVIDVFGNVPASRGGHSITLVGSRVLVFGGEDKNRRLLNDLHVLHLETMTWDVVETKQT 199
Query: 245 GPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCC 304
P PR +H AA + D+ LLIFGG S S +DL+ LD +TM W++ ++G +PRAG
Sbjct: 200 RPVPRFDHTAATHSDRYLLIFGGCSHSIFYSDLHILDLQTMEWSQPHVQGDVVTPRAGHA 259
Query: 305 GVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEK 364
G+ WYI GGG ETL+ ++ K WS + + +++G ++ +
Sbjct: 260 GITIDENWYIVGGGDNSTGCLETLVLNMSKLVWSTSTHVEARHPLASEGLSVCSASVFGE 319
Query: 365 DFLVAFGGIKKEPSNQVEVLSIEKNESS 392
+ LVAFGG + +N + V+ ++ ESS
Sbjct: 320 NILVAFGGYNGKYNNDIFVMRLKPGESS 347
|
|
| UNIPROTKB|Q5EA50 RABEPK "Rab9 effector protein with kelch motifs" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 285 (105.4 bits), Expect = 3.8e-24, P = 3.8e-24
Identities = 77/265 (29%), Positives = 112/265 (42%)
Query: 63 PEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAV---IGN----KMIVVGGESGNGLLDD 115
P + G E W L++ GD P R H+ + +G+ K+ +VGG N D
Sbjct: 5 PVLEPGDKPRKETWYTLTLVGDSPCARVGHSCSYLPPVGDAERGKVFIVGGADPNRSFSD 64
Query: 116 VQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175
V ++ W A IP+C HS+ W + GG SG+ R +
Sbjct: 65 VHTIDLGTHQWDLATSEGLLPRYEHTSFIPSCTPHSI--W-----VFGGADQSGN-RNCL 116
Query: 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLND--LHMFDLK 232
+ +T W+ E G P R+ HT A L +FGG + + + D LH+FD
Sbjct: 117 QVLNPDTRTWTTPEVTGPPPSPRTFHTSSAAIGDQLYVFGGGERGAQPVQDVQLHVFDAN 176
Query: 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292
+LTW G PSPR HV K L I GG + +DL+ +D M W +++
Sbjct: 177 TLTWSQPETHGKPPSPRHGHVMVAAGTK-LFIHGGLAGDNFYDDLHCIDISDMKWQKLRP 235
Query: 293 RGFHPSPRAGCCGVLCGTKWYIAGG 317
G P+ A V G Y+ GG
Sbjct: 236 TGAAPTGCAAHSAVAVGKHLYVFGG 260
|
|
| MGI|MGI:2139530 Rabepk "Rab9 effector protein with kelch motifs" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 280 (103.6 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 78/265 (29%), Positives = 112/265 (42%)
Query: 63 PEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAV---IGN----KMIVVGGESGNGLLDD 115
P + G W L+ GD+P PR H+ + +G+ K+ +VGG + N D
Sbjct: 13 PILEPGDKPRKATWYTLTCPGDRPCPRVGHSCSYFPPVGDAESGKIFIVGGANPNQSFSD 72
Query: 116 VQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175
V ++ W A +P+C HS+ W + GG SG+ R +
Sbjct: 73 VHTMDLGTHQWDTATREGLLPRYEHASFLPSCSPHSI--W-----VFGGADQSGN-RNCL 124
Query: 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLND--LHMFDLK 232
E WS E G P R+ HT A + L +FGG + + + D LH+FD
Sbjct: 125 QVMSPEDRTWSTPEVTGSPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVEDVKLHVFDAN 184
Query: 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292
+LTW G+ PSPR HV K L I GG + K +DL+ +D M W ++
Sbjct: 185 TLTWSQPETHGSPPSPRHGHVMVAAGTK-LFIHGGLAGDKFFDDLHCIDIGDMSWQKLGP 243
Query: 293 RGFHPSPRAGCCGVLCGTKWYIAGG 317
G P A V G Y+ GG
Sbjct: 244 TGAVPVGCAAHAAVAVGHHVYMFGG 268
|
|
| RGD|1310612 Rabepk "Rab9 effector protein with kelch motifs" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 274 (101.5 bits), Expect = 5.9e-23, P = 5.9e-23
Identities = 77/265 (29%), Positives = 111/265 (41%)
Query: 63 PEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAV---IGN----KMIVVGGESGNGLLDD 115
P + G W L+ GDKP PR H+ + +G K+ +VGG + N D
Sbjct: 5 PILEPGDKPRKAAWYTLTCPGDKPCPRVGHSCSYFPPVGEAEKGKVFIVGGANPNQSFSD 64
Query: 116 VQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175
V ++ W A +P+C HS+ W + GG SG+ R +
Sbjct: 65 VHTMDLGTHRWDTATREGLLPRYEHASFLPSCSPHSI--W-----VFGGADQSGN-RNCL 116
Query: 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLND--LHMFDLK 232
+ E WS E G P R+ HT A + L +FGG + + + D LH+FD
Sbjct: 117 QVMNPEARTWSTPEVTGCPPSPRTFHTSSAAIGNHLYVFGGGERGAQPVQDVKLHVFDAN 176
Query: 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292
+LTW G+ PSPR H K L I GG + + +DL+ +D M W ++
Sbjct: 177 TLTWAQPETHGSPPSPRHGHAMVAAGTK-LFIHGGLAGDRFFDDLHCIDIGDMSWQKLGP 235
Query: 293 RGFHPSPRAGCCGVLCGTKWYIAGG 317
G P A V G Y+ GG
Sbjct: 236 TGTAPVGCAAHAAVAVGHHVYVFGG 260
|
|
| UNIPROTKB|F1SKQ3 RABEPK "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 1.0e-21, P = 1.0e-21
Identities = 75/265 (28%), Positives = 110/265 (41%)
Query: 63 PEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAV---IGN----KMIVVGGESGNGLLDD 115
P + G W L+ GD P R H+ + +G+ K+ +VGG + N D
Sbjct: 5 PVLEPGDKPRKATWYTLTPTGDSPCARVGHSCSYLPPVGDSKRGKVFIVGGANPNRSFSD 64
Query: 116 VQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175
V ++ W +P+C HS+ W + GG SG+ R +
Sbjct: 65 VHTMDLGTHQWDLTTSEGLLPRYEHASFVPSCAPHSI--W-----VFGGADQSGN-RNCL 116
Query: 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLND--LHMFDLK 232
+ ET W++ E P R+ HT + L +FGG + + + D LH+FD
Sbjct: 117 QVLNPETRTWTMPEVTSPPPSPRTFHTSSSVIGNQLYVFGGGERGAQPVQDVKLHVFDAN 176
Query: 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292
+LTW G PSPR HV K L I GG + K +DL+ +D M W ++
Sbjct: 177 TLTWSQPETLGEPPSPRHGHVMVAAGTK-LFIHGGLAGDKFYDDLHCIDINDMKWQKLSP 235
Query: 293 RGFHPSPRAGCCGVLCGTKWYIAGG 317
G P+ A V G YI GG
Sbjct: 236 TGAAPTGCAAHSAVTVGKHVYIFGG 260
|
|
| UNIPROTKB|Q7Z6M1 RABEPK "Rab9 effector protein with kelch motifs" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 267 (99.0 bits), Expect = 3.3e-21, P = 3.3e-21
Identities = 75/265 (28%), Positives = 110/265 (41%)
Query: 63 PEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAV---IGN----KMIVVGGESGNGLLDD 115
P + G W L++ GD P R H+ + +GN K+ +VGG + N D
Sbjct: 5 PVLEPGDKPRKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFSD 64
Query: 116 VQVLNFDRFSWTAAXXXXXXXXXXXXXXIPACRGHSLISWGKKVLLVGGKTDSGSDRVSV 175
V ++ + W IP+C + W + GG SG+ R +
Sbjct: 65 VHTMDLGKHQWDLDTCKGLLPRYEHASFIPSCTPDRI--W-----VFGGANQSGN-RNCL 116
Query: 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLND--LHMFDLK 232
+ ET W+ E P R+ HT A + L +FGG + + + D LH+FD
Sbjct: 117 QVLNPETRTWTTPEVTSPPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVQDTKLHVFDAN 176
Query: 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292
+LTW G PSPR HV K L I GG + + +DL+ +D M W ++
Sbjct: 177 TLTWSQPETLGNPPSPRHGHVMVAAGTK-LFIHGGLAGDRFYDDLHCIDISDMKWQKLNP 235
Query: 293 RGFHPSPRAGCCGVLCGTKWYIAGG 317
G P+ A V G YI GG
Sbjct: 236 TGAAPAGCAAHSAVAMGKHVYIFGG 260
|
|
| DICTYBASE|DDB_G0270750 DDB_G0270750 "Kelch repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 275 (101.9 bits), Expect = 5.1e-21, P = 5.1e-21
Identities = 74/257 (28%), Positives = 120/257 (46%)
Query: 75 NWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAAXXXXX 134
+W+ + G+ P R+ H+A +I +KM + GG L+D+ VL+ + F+W+
Sbjct: 156 SWVEIKTKGNAPNGRYRHSAIIIEDKMYIFGGYRSK-CLNDLHVLDLETFTWSEPICIGE 214
Query: 135 XXXXXXXXXIPACRG-HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGD 193
P+ R HS+ GK ++L GG S+ + ++ DT T W+ + G
Sbjct: 215 A---------PSARSSHSVCCVGKMMILFGGSGARYSNEL--FSLDTVTMRWTKHDVLGT 263
Query: 194 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253
P R HT+ ++ FGG + KR+ N +++ D ++ W +G P PR H
Sbjct: 264 PPSERWCHTMCSFGKKVVTFGGSNDKRKD-NKVYILDTDTMEWSQPPTSGNCPIPRQLHT 322
Query: 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWY 313
A + ++++FGG K + LNDLY L+ TM W KI P R + K Y
Sbjct: 323 AVAIGE-SMIVFGGWGKHQELNDLYILNTRTMKWVCPKIDNVIPCCRQLHSAWVYNGKMY 381
Query: 314 IAGGGSRKKRHAETLIF 330
GG + KR + F
Sbjct: 382 TLGGYFKNKRMIDVYCF 398
|
|
| WB|WBGene00001827 hcf-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 258 (95.9 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 83/282 (29%), Positives = 126/282 (44%)
Query: 72 NSENWMVLSIA-GDKPIPRFNHAAAVIGNKMIVVGGESGN-GLLDDVQVLNFDRFSWTAA 129
N W ++ + G P PR H A V+ +++ GG GN G++D++ N + WTA
Sbjct: 26 NVVRWRIVQQSTGPNPKPRHGHRAVVLKELIVIFGG--GNEGMIDELHAYNTQKREWTAP 83
Query: 130 XXXXXXXXXXXXXXIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSV-- 187
PA IS G K+ GG T+ G ++ + W
Sbjct: 84 QCCGDVPT-------PAA-AFGAISLGNKIYRFGGMTEYGKYTNDLYELQSTRWEWRRLN 135
Query: 188 --VEAKGDIPVARSGHTVV--RASSVLILFGG-----EDGKRRK---LNDLHMFDLKS-- 233
V + G +P R GH+ V + S +FGG D KR L+DL++ +L
Sbjct: 136 PRVHSNGHLPCPRIGHSFVVSQKSQKAYVFGGLSNDLNDPKRNVPHYLDDLYVINLSGPQ 195
Query: 234 -LTWLPLHCTGTGPSPRSNHVAALYDDKNL---LIFGGSSKSKTLNDLYSLDFETMIWTR 289
L W L+ TG GP R +H A +Y+ ++ +++GG + + L DL+ L+ T+ WT
Sbjct: 196 HLIWEKLNATGPGPISRESHTAVIYEKDSISRMVVYGGMNGVR-LGDLWYLNLNTLHWTE 254
Query: 290 IKI----RGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAET 327
IK G P PR+ VL G K ++ GG HA T
Sbjct: 255 IKFDDPRTGIPPMPRSLHSSVLIGDKMFVYGGWVPLLEHAST 296
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 694 | |||
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 4e-12 | |
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 3e-09 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 2e-08 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 5e-08 | |
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 6e-08 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 6e-08 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 4e-07 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 2e-06 | |
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 2e-05 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 2e-05 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 4e-05 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 5e-05 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 9e-05 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 2e-04 | |
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 4e-04 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 4e-04 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 5e-04 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 5e-04 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 0.001 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 0.001 | |
| pfam07646 | 48 | pfam07646, Kelch_2, Kelch motif | 0.002 | |
| pfam07646 | 48 | pfam07646, Kelch_2, Kelch motif | 0.002 | |
| TIGR03548 | 323 | TIGR03548, mutarot_permut, cyclically-permuted mut | 0.004 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 4e-12
Identities = 60/247 (24%), Positives = 110/247 (44%), Gaps = 17/247 (6%)
Query: 75 NWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGE-SGNGLLDD-VQVLNFDRFSWTAASSK 132
W+ + G+ P R +H A +GNK+ GGE + N +D + V + + +W+
Sbjct: 152 KWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWS----- 206
Query: 133 LYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192
+SP++ + +C G ++S G + + GG+ D+ ++FDT T W ++
Sbjct: 207 --ISPATGDVPHLSCLGVRMVSIGSTLYVFGGR-DASRQYNGFYSFDTTTNEWKLLTPVE 263
Query: 193 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252
+ P RS H++ + +FGG +L L +++ W HC+ G S
Sbjct: 264 EGPTPRSFHSMAADEENVYVFGGV-SATARLKTLDSYNIVDKKW--FHCSTPGDSFSIRG 320
Query: 253 VAAL--YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT 310
A L K +++G + ++D++ D WT+++ G PS R+ G
Sbjct: 321 GAGLEVVQGKVWVVYGFNGCE--VDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGK 378
Query: 311 KWYIAGG 317
I GG
Sbjct: 379 HIVIFGG 385
|
Length = 470 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 3e-09
Identities = 39/101 (38%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 243 GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTL--NDLYSLDFETMIWTRIKIRGFHPSPR 300
G GP PR +H A+ DK L FGG K DLY DF T W+ G PR
Sbjct: 17 GKGPGPRCSHGIAVVGDK-LYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANG--DVPR 73
Query: 301 AGCCGV---LCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 338
C GV GTK YI GG K+ ++ +D +K EW+
Sbjct: 74 ISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWT 114
|
Length = 341 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-08
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 210 LILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257
+ +FGG +LNDL ++DL + TW L G P PR+ H A +
Sbjct: 4 IYVFGGLGDGGTRLNDLWVYDLDTNTWEKL---GDLPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-08
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 248 PRSNHVAALYDDKNLLIFGG-SSKSKTLNDLYSLDFETMIWTRI 290
PR+ H + D L +FGG + L+D++ D T WTR+
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRL 44
|
Length = 49 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 6e-08
Identities = 59/252 (23%), Positives = 106/252 (42%), Gaps = 26/252 (10%)
Query: 83 GDKPIPRFNHAAAVIGNKMIVVGGE-SGNGLLD-DVQVLNFDRFSWTAASSKLYLSPSSL 140
G P PR +H AV+G+K+ GGE N +D D+ V +F+ +W+ A +
Sbjct: 17 GKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIA------PANGD 70
Query: 141 PLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI---PVA 197
+I +C G +++ G K+ + GG+ D + +++DT W+ + K D P A
Sbjct: 71 VPRI-SCLGVRMVAVGTKLYIFGGR-DEKREFSDFYSYDTVKNEWTFL-TKLDEEGGPEA 127
Query: 198 RSGHTVVRASSVLILFGGED-----GKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNH 252
R+ H++ + + +FGG + + +++ W+ L G R
Sbjct: 128 RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA 187
Query: 253 VAALYDDKNLLIFG-------GSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCG 305
A+ K +++G G N + D + WT ++ G PS R+
Sbjct: 188 GFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAH 247
Query: 306 VLCGTKWYIAGG 317
+ G I GG
Sbjct: 248 AVVGKYIIIFGG 259
|
Length = 341 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 6e-08
Identities = 52/262 (19%), Positives = 91/262 (34%), Gaps = 26/262 (9%)
Query: 89 RFNHAAAVIGNKMIVVGGESGNGL-LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPAC 147
+ + V+ N + +GG + N L ++ V + SW +P I
Sbjct: 285 VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-----------KVPELIYPR 333
Query: 148 RGHSLISWGKKVLLVGGKTDSGS-DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA 206
+ + + ++ ++GG +S S + V W E E P R VV
Sbjct: 334 KNPGVTVFNNRIYVIGGIYNSISLNTVESWKP---GESKWREEPPLIFP--RYNPCVVNV 388
Query: 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFG 266
++++ + GG L + F L + W P A +D K +I G
Sbjct: 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL---PISHYGGCAIYHDGKIYVIGG 445
Query: 267 GS--SKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRH 324
S K N + S + T WT + F + C + K Y+ GG +
Sbjct: 446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC---IFNNKIYVVGGDKYEYYI 502
Query: 325 AETLIFDILKGEWSVAITSPSS 346
E ++D W++ P
Sbjct: 503 NEIEVYDDKTNTWTLFCKFPKV 524
|
Length = 534 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-07
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 197 ARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 240
R+ HT L LFGGE+ L+D+ +FDL + TW L
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLP 45
|
Length = 49 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-06
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 88 PRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASS 131
PR V+G K+ V+GG G L V+V + + +W+ S
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPS 44
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 58/253 (22%), Positives = 91/253 (35%), Gaps = 33/253 (13%)
Query: 72 NSENWMVLSIAGDKP-IPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAAS 130
N+ W + GD P I +G K+ + GG D + + WT
Sbjct: 58 NTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWT--- 114
Query: 131 SKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRV-----SVWTFDTETECW 185
+L+ A HS+ S V + GG + G + ++ ++ W
Sbjct: 115 ---FLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKW 171
Query: 186 SVVEAKGD---------IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW 236
+ G+ V + VV + IL GG+ N + FD S W
Sbjct: 172 VQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYES--NAVQFFDPASGKW 229
Query: 237 LPLHCTGTGPSPRSNHVAALYDDKNLLIFGGS---------SKSKTLNDLYSLDFETMIW 287
+ TG PS RS A+ K ++IFGG N+ Y+LD ET++W
Sbjct: 230 TEVETTGAKPSARSVFAHAVVG-KYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVW 288
Query: 288 TRIKIRGFHPSPR 300
++ G PR
Sbjct: 289 EKLGECGEPAMPR 301
|
Length = 341 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-05
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV 204
G K+ + GG D G+ +W +D +T W + GD+P R+GH
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKL---GDLPGPRAGHAAT 46
|
Length = 48 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 4e-05
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 248 PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI 290
PRS + K + + GG ++L+ + D ET W+++
Sbjct: 1 PRSGAGVVVLGGK-IYVIGGYDGGQSLSSVEVYDPETNTWSKL 42
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 5e-05
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 86 PIPRFNHAAAVIGNKMIVVGGESG--NGLLDDVQVLN 120
P+PR NH A V+G ++ + GG + DDV VL+
Sbjct: 2 PVPRANHCAVVVGGEIYLYGGYTSGNGQSSDDVYVLS 38
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 9e-05
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 194 IPVARSGHTVVRASSVLILFGGEDGKRRK-LNDLHMFDLKS 233
+PV R+ H V + L+GG + +D+++ L
Sbjct: 1 LPVPRANHCAVVVGGEIYLYGGYTSGNGQSSDDVYVLSLPG 41
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 22/159 (13%)
Query: 87 IPRFNHAAAVIGNKMIVVGGESGNG-LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIP 145
PR+N + N + V+GG S N LL V+ + + W+ S PL I
Sbjct: 378 FPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS----------PLPIS 427
Query: 146 ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT----FDTETECWSVVEAKGDIPVARSGH 201
G I K+ ++GG S D + V+ ++ T W+ + + P +
Sbjct: 428 H-YGGCAIYHDGKIYVIGGI--SYIDNIKVYNIVESYNPVTNKWT-ELSSLNFPRINASL 483
Query: 202 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 240
+ I G D +N++ ++D K+ TW
Sbjct: 484 CIFNNK---IYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519
|
Length = 534 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 4e-04
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 18/133 (13%)
Query: 160 LLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARS--GHTVVRASSVLILFGGED 217
+L GGK+D S+ V FD + W+ VE G P ARS H VV +I+FGGE
Sbjct: 206 ILPGGKSDYESNAVQF--FDPASGKWTEVETTGAKPSARSVFAHAVV--GKYIIIFGGEV 261
Query: 218 --------GKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR---SNHVAALYDDKNLLIFG 266
G N+ + D ++L W L G PR + A +Y LL+ G
Sbjct: 262 WPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHG 321
Query: 267 GS-SKSKTLNDLY 278
G ++ +DLY
Sbjct: 322 GKLPTNERTDDLY 334
|
Length = 341 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 4e-04
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 88 PRFNHAAAVIG-NKMIVVGGESGNG-LLDDVQVLNFDRFSWTAASS 131
PR H + IG ++ + GGE+ +G +L DV V + +WT S
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPS 46
|
Length = 49 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 5e-04
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 259 DKNLLIFGGSSKSKT-LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC 308
+ +FGG T LNDL+ D +T W ++ P PRAG +
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDL---PGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 48/249 (19%), Positives = 91/249 (36%), Gaps = 30/249 (12%)
Query: 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGG 215
+ +GG + SV ++DT+T+ W+ V ++ R V ++ + + GG
Sbjct: 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGG 350
Query: 216 EDGKRRKLNDLHMFDLKSLTW---LPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK 272
LN + + W PL PR N ++ + + GG SK+
Sbjct: 351 IYNSI-SLNTVESWKPGESKWREEPPLI------FPRYNPCVVNVNN-LIYVIGGISKND 402
Query: 273 T-LNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGS---RKKRHAETL 328
L + T W P G C + K Y+ GG S K +
Sbjct: 403 ELLKTVECFSLNTNKW---SKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVE 459
Query: 329 IFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-PSNQVEVLSIE 387
++ + +W+ SS+ + + + + + + GG K E N++EV +
Sbjct: 460 SYNPVTNKWTEL-----SSLNFPRINASLCIFN---NKIYVVGGDKYEYYINEIEVYDDK 511
Query: 388 KNESSMGRR 396
N ++ +
Sbjct: 512 TNTWTLFCK 520
|
Length = 534 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 246 PSPRSNHVAALYDDKNLLIFGG--SSKSKTLNDLYSLDFET 284
P PR+NH A + + ++GG S ++ +D+Y L
Sbjct: 2 PVPRANHCAVVVGG-EIYLYGGYTSGNGQSSDDVYVLSLPG 41
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 36.7 bits (85), Expect = 0.001
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVAR 198
GHS +S G K+ + GG ++ V +D ET W + +P R
Sbjct: 4 GHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKL---PPLPTPR 50
|
Length = 50 |
| >gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.002
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 88 PRFNHAAAVIGNKMIVVGGESGNGLLD--DVQVLNFDRFSWT 127
PR+ HA+ V+G K+ VVGG +G G L D+ VL+ + WT
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWT 42
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48 |
| >gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif | Back alignment and domain information |
|---|
Score = 36.2 bits (84), Expect = 0.002
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 147 CRGHSLISWGKKVLLVGGKTDSGSDRVS-VWTFDTETECWSVVEAKG 192
H+ + G K+ +VGG T G S +W D ET W+ + A
Sbjct: 2 RYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPALP 48
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48 |
| >gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family protein | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 37/166 (22%), Positives = 63/166 (37%), Gaps = 7/166 (4%)
Query: 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK-S 233
++T D E V+A G +P A + + + + GG + + ++ L S
Sbjct: 41 IYTLDDEDSNLKWVKA-GQLPYAAAYGASISTENGIYYIGGSNSSES-FSSVYRITLDES 98
Query: 234 LTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIR 293
L + + P N A D K L + GG++ K N Y + ET W ++
Sbjct: 99 KEALIIETLPSLPFAMDNGSATYKDGK-LYVGGGNANGKPSNKFYCFNLETQEWE--ELP 155
Query: 294 GFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV 339
F +PR V + Y+ GGG + + + G W
Sbjct: 156 DFPGAPRVQPVCVKLQNELYVFGGGD-NIAYTDGYKYSPKTGTWEK 200
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. Length = 323 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 694 | |||
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 100.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 100.0 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 100.0 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 100.0 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 100.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 100.0 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 100.0 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 99.98 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 99.97 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.97 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 99.97 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.97 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 99.96 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 99.9 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.71 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.67 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 99.58 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 99.52 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 98.94 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 98.88 | |
| PLN02772 | 398 | guanylate kinase | 98.82 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.75 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 98.65 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 98.63 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.62 | |
| PLN02772 | 398 | guanylate kinase | 98.62 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.59 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 98.58 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.54 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.53 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.49 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.43 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 98.4 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.34 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.25 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.06 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 97.99 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 97.95 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 97.95 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.58 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.35 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.19 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.96 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.89 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.53 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.36 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 96.35 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 96.27 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.94 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 95.8 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 95.76 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 95.76 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 95.72 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.69 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 95.6 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 95.59 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 95.44 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 95.16 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 94.63 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.57 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 94.33 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 94.31 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 94.2 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 94.2 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 94.14 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 94.08 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 93.81 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 93.78 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 93.76 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 93.57 | |
| PF08614 | 194 | ATG16: Autophagy protein 16 (ATG16); InterPro: IPR | 93.24 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 92.92 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 92.91 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 92.55 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 92.54 | |
| PRK10884 | 206 | SH3 domain-containing protein; Provisional | 92.46 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 92.35 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 92.29 | |
| PF10186 | 302 | Atg14: UV radiation resistance protein and autopha | 92.25 | |
| PF13094 | 160 | CENP-Q: CENP-Q, a CENPA-CAD centromere complex sub | 92.23 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 92.21 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 92.2 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 92.16 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 92.04 | |
| PF15188 | 85 | CCDC-167: Coiled-coil domain-containing protein 16 | 92.02 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 91.84 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 91.72 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 91.66 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 91.63 | |
| PRK11637 | 428 | AmiB activator; Provisional | 91.38 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 91.14 | |
| PF14197 | 69 | Cep57_CLD_2: Centrosome localisation domain of PPC | 90.82 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 90.8 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 90.76 | |
| PF04111 | 314 | APG6: Autophagy protein Apg6; InterPro: IPR007243 | 90.68 | |
| KOG4403 | 575 | consensus Cell surface glycoprotein STIM, contains | 90.49 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 89.96 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 89.82 | |
| KOG0999 | 772 | consensus Microtubule-associated protein Bicaudal- | 89.76 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 89.61 | |
| PRK11637 | 428 | AmiB activator; Provisional | 89.2 | |
| PF13088 | 275 | BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A | 89.16 | |
| KOG0980 | 980 | consensus Actin-binding protein SLA2/Huntingtin-in | 89.14 | |
| KOG0993 | 542 | consensus Rab5 GTPase effector Rabaptin-5 [Intrace | 89.07 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 89.04 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 88.98 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 88.91 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 88.78 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 88.53 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 88.49 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 88.37 | |
| KOG3478 | 120 | consensus Prefoldin subunit 6, KE2 family [Posttra | 88.32 | |
| KOG3215 | 222 | consensus Uncharacterized conserved protein [Funct | 88.25 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 88.2 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 87.85 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 87.48 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 87.27 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 87.21 | |
| KOG1899 | 861 | consensus LAR transmembrane tyrosine phosphatase-i | 87.19 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 87.03 | |
| PF08581 | 79 | Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t | 87.02 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 86.66 | |
| PF05010 | 207 | TACC: Transforming acidic coiled-coil-containing p | 86.66 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 86.54 | |
| PF11932 | 251 | DUF3450: Protein of unknown function (DUF3450); In | 86.26 | |
| PF09730 | 717 | BicD: Microtubule-associated protein Bicaudal-D; I | 86.24 | |
| PF12217 | 367 | End_beta_propel: Catalytic beta propeller domain o | 86.21 | |
| PRK13169 | 110 | DNA replication intiation control protein YabA; Re | 86.09 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 85.74 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 85.63 | |
| PF04880 | 166 | NUDE_C: NUDE protein, C-terminal conserved region; | 85.62 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 85.55 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 85.36 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 85.27 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 85.21 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 85.2 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 84.93 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 84.51 | |
| PF06156 | 107 | DUF972: Protein of unknown function (DUF972); Inte | 84.33 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 84.33 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 84.29 | |
| KOG4673 | 961 | consensus Transcription factor TMF, TATA element m | 84.1 | |
| PRK11281 | 1113 | hypothetical protein; Provisional | 83.91 | |
| PF05529 | 192 | Bap31: B-cell receptor-associated protein 31-like | 83.7 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 83.68 | |
| PRK09039 | 343 | hypothetical protein; Validated | 83.61 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 83.18 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 83.11 | |
| PF15619 | 194 | Lebercilin: Ciliary protein causing Leber congenit | 82.62 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 82.57 | |
| KOG0971 | 1243 | consensus Microtubule-associated protein dynactin | 82.55 | |
| TIGR01843 | 423 | type_I_hlyD type I secretion membrane fusion prote | 82.46 | |
| COG1579 | 239 | Zn-ribbon protein, possibly nucleic acid-binding [ | 82.37 | |
| PF05911 | 769 | DUF869: Plant protein of unknown function (DUF869) | 82.33 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 81.87 | |
| PTZ00421 | 493 | coronin; Provisional | 81.64 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 81.59 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 81.26 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 81.25 | |
| PF04156 | 191 | IncA: IncA protein; InterPro: IPR007285 Chlamydia | 81.15 | |
| PF12325 | 120 | TMF_TATA_bd: TATA element modulatory factor 1 TATA | 81.0 | |
| PF12777 | 344 | MT: Microtubule-binding stalk of dynein motor; Int | 80.99 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 80.98 | |
| PF10146 | 230 | zf-C4H2: Zinc finger-containing protein ; InterPro | 80.92 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 80.82 | |
| PTZ00421 | 493 | coronin; Provisional | 80.7 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 80.55 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 80.49 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 80.38 | |
| PF05529 | 192 | Bap31: B-cell receptor-associated protein 31-like | 80.23 |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=386.26 Aligned_cols=336 Identities=19% Similarity=0.286 Sum_probs=267.7
Q ss_pred CCCeEEEecCCCCCCCccccccCccccCCCCCCCCceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCC-C-CcCcEE
Q 005493 40 NSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGN-G-LLDDVQ 117 (694)
Q Consensus 40 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~-~-~~~~v~ 117 (694)
.+..|+.|+|+..+.........+++ .......+|..++..+.+|.||.+|++++++++||||||.... . ..+++|
T Consensus 119 ~~~~ivgf~G~~~~~~~~ig~y~~~~--~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~ 196 (470)
T PLN02193 119 QGGKIVGFHGRSTDVLHSLGAYISLP--STPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLY 196 (470)
T ss_pred cCCeEEEEeccCCCcEEeeEEEEecC--CChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEE
Confidence 36669999998765532222222232 0001248999998766789999999999999999999997532 2 447899
Q ss_pred EEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCc
Q 005493 118 VLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVA 197 (694)
Q Consensus 118 ~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~ 197 (694)
+||+.+++|..++++.. .|.+++.+|++++++++||||||... ....+++|+||+.+++|+.+++.+..|.+
T Consensus 197 ~yD~~~~~W~~~~~~g~-------~P~~~~~~~~~v~~~~~lYvfGG~~~-~~~~ndv~~yD~~t~~W~~l~~~~~~P~~ 268 (470)
T PLN02193 197 VFDLETRTWSISPATGD-------VPHLSCLGVRMVSIGSTLYVFGGRDA-SRQYNGFYSFDTTTNEWKLLTPVEEGPTP 268 (470)
T ss_pred EEECCCCEEEeCCCCCC-------CCCCcccceEEEEECCEEEEECCCCC-CCCCccEEEEECCCCEEEEcCcCCCCCCC
Confidence 99999999998765311 12224568999999999999999864 34578999999999999999865555899
Q ss_pred ceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeE
Q 005493 198 RSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDL 277 (694)
Q Consensus 198 R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv 277 (694)
|+.|+++.++++||||||.+.. ..++++++||+.+++|+.++..+.+|.+|.+|++++++++ +||+||.+.. .++++
T Consensus 269 R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gk-iyviGG~~g~-~~~dv 345 (470)
T PLN02193 269 RSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGK-VWVVYGFNGC-EVDDV 345 (470)
T ss_pred ccceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCc-EEEEECCCCC-ccCce
Confidence 9999999999999999999765 3578999999999999999876778899999999999988 9999998653 46899
Q ss_pred EEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCC---------CCCcCeEEEEECCCCcEEEeecCCC--C
Q 005493 278 YSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR---------KKRHAETLIFDILKGEWSVAITSPS--S 346 (694)
Q Consensus 278 ~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~---------~~~~~~v~~yd~~t~~W~~l~~~~~--~ 346 (694)
++||+.+++|+.++..+..|.+|..|++++++++|||+||... ....+++|+||+.+++|+.+...+. .
T Consensus 346 ~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~ 425 (470)
T PLN02193 346 HYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEE 425 (470)
T ss_pred EEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCC
Confidence 9999999999999887778899999999999999999999753 1245789999999999999875432 3
Q ss_pred CCCCCcCcEEEEEeecCCcEEEEEcCCCC--CCCCcEEEEECcc
Q 005493 347 SVTSNKGFTLVLVQHKEKDFLVAFGGIKK--EPSNQVEVLSIEK 388 (694)
Q Consensus 347 ~p~~r~~~s~~~v~~~~~~~i~v~GG~~~--~~~~~v~~~di~~ 388 (694)
.|.+|..++++.....+++.||+|||+.. +..+++|+|++++
T Consensus 426 ~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 426 TPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred CCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence 46677666654443344557999999964 4489999998764
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=358.92 Aligned_cols=305 Identities=21% Similarity=0.367 Sum_probs=244.2
Q ss_pred CCCceEEeecc-CCCCCCccceEEEEECCEEEEEcCCCCC--CCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCcc
Q 005493 72 NSENWMVLSIA-GDKPIPRFNHAAAVIGNKMIVVGGESGN--GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACR 148 (694)
Q Consensus 72 ~t~~W~~l~~~-~~~P~~R~~hs~~~~~~~lyv~GG~~~~--~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~ 148 (694)
....|..+... +.+|.||.+|++++++++|||+||.... ...+++++||+.+++|..++++.. .+.+.+.
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-------~p~~~~~ 77 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGD-------VPRISCL 77 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCC-------CCCCccC
Confidence 56779999763 4579999999999999999999998532 345899999999999999887410 1112345
Q ss_pred ceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeec--CCCCCcceeeEEEEECCeEEEEccccCCC-----c
Q 005493 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAK--GDIPVARSGHTVVRASSVLILFGGEDGKR-----R 221 (694)
Q Consensus 149 ~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--g~~p~~R~~~~~~~~~~~lyv~GG~~~~~-----~ 221 (694)
+|++++++++||+|||.... ...+++++||+.+++|+.+++. ...|.+|..|++++++++||||||.+... .
T Consensus 78 ~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 156 (341)
T PLN02153 78 GVRMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPE 156 (341)
T ss_pred ceEEEEECCEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCc
Confidence 78999999999999998643 3567999999999999988742 12388999999999999999999986432 2
Q ss_pred cccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCC--------CCCCeEEEEEcCCCcEEEeecc
Q 005493 222 KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS--------KTLNDLYSLDFETMIWTRIKIR 293 (694)
Q Consensus 222 ~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~--------~~~~dv~~yd~~t~~W~~l~~~ 293 (694)
.++++++||+.+++|+.++..+..|.+|.+|++++++++ |||+||.... ...+++++||+.+++|+.+...
T Consensus 157 ~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 157 RFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGK-IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred ccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCe-EEEEeccccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 357899999999999999866666789999999999998 9999986421 2367899999999999999877
Q ss_pred CCCCCCCcceEEEEECCEEEEEcCCCC---------CCCcCeEEEEECCCCcEEEeecCC-CCCCCCCcCcEEEEEeecC
Q 005493 294 GFHPSPRAGCCGVLCGTKWYIAGGGSR---------KKRHAETLIFDILKGEWSVAITSP-SSSVTSNKGFTLVLVQHKE 363 (694)
Q Consensus 294 ~~~p~~R~~~sav~~~~~iyV~GG~~~---------~~~~~~v~~yd~~t~~W~~l~~~~-~~~p~~r~~~s~~~v~~~~ 363 (694)
+..|.+|..|++++++++|||+||... ....+++|+||+.+++|+.+.... ...|..+..++++.+. +
T Consensus 236 g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~--~ 313 (341)
T PLN02153 236 GAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVY--G 313 (341)
T ss_pred CCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccC--C
Confidence 777999999999999999999999742 233579999999999999886422 1334455556666555 4
Q ss_pred CcEEEEEcCCCC--CCCCcEEEEECc
Q 005493 364 KDFLVAFGGIKK--EPSNQVEVLSIE 387 (694)
Q Consensus 364 ~~~i~v~GG~~~--~~~~~v~~~di~ 387 (694)
++.||||||+.. +..+++|+|++.
T Consensus 314 ~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 314 KNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred cceEEEEcCcCCCCccccceEEEecc
Confidence 468999999954 458999999864
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=324.15 Aligned_cols=337 Identities=26% Similarity=0.426 Sum_probs=277.4
Q ss_pred ceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCCCC-----cCcEEEEECCCCcEEEcccc--cccCCCCCCCCCCCc
Q 005493 75 NWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGL-----LDDVQVLNFDRFSWTAASSK--LYLSPSSLPLKIPAC 147 (694)
Q Consensus 75 ~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~~-----~~~v~~yd~~t~~W~~~~~~--~~~~p~~~~~~~p~r 147 (694)
.|+.-- .--+.|..|+++.+|..||-|||+..... .-++.++|..+.+|+.+++. ....+...|.-+-.|
T Consensus 3 ~WTVHL---eGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqR 79 (392)
T KOG4693|consen 3 TWTVHL---EGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQR 79 (392)
T ss_pred eEEEEe---cCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhh
Confidence 465533 23446999999999999999999865432 34899999999999999983 222233333445578
Q ss_pred cceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCC-Cccccce
Q 005493 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK-RRKLNDL 226 (694)
Q Consensus 148 ~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~~v 226 (694)
++|+.+.+++++|+.||.++....++.+++||+++++|......|-+|.+|.+|++|++++.+|||||+... ...++++
T Consensus 80 YGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~ 159 (392)
T KOG4693|consen 80 YGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDT 159 (392)
T ss_pred cCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccc
Confidence 999999999999999999988888999999999999999999999999999999999999999999999543 4678999
Q ss_pred EEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCC---------CCCCeEEEEEcCCCcEEEeeccCCCC
Q 005493 227 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS---------KTLNDLYSLDFETMIWTRIKIRGFHP 297 (694)
Q Consensus 227 ~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~---------~~~~dv~~yd~~t~~W~~l~~~~~~p 297 (694)
+.+|+.|.+|+.+.+.|+.|.-|..|+++++++. +|||||++.. .+.+.+..+|+.++.|...+..+..|
T Consensus 160 h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~-MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P 238 (392)
T KOG4693|consen 160 HVLDFATMTWREMHTKGDPPRWRDFHTASVIDGM-MYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKP 238 (392)
T ss_pred eeEeccceeeeehhccCCCchhhhhhhhhhccce-EEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCC
Confidence 9999999999999999999999999999999977 9999998532 45778999999999999998888889
Q ss_pred CCCcceEEEEECCEEEEEcCCCCC--CCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCC
Q 005493 298 SPRAGCCGVLCGTKWYIAGGGSRK--KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK 375 (694)
Q Consensus 298 ~~R~~~sav~~~~~iyV~GG~~~~--~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~ 375 (694)
.+|..|++.++++++|+|||+.+. .-.+++|+|||++..|+.+.. .+..|.+|..+++++.+ +++|+|||...
T Consensus 239 ~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~-~Gk~P~aRRRqC~~v~g----~kv~LFGGTsP 313 (392)
T KOG4693|consen 239 GGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV-RGKYPSARRRQCSVVSG----GKVYLFGGTSP 313 (392)
T ss_pred CcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeec-cCCCCCcccceeEEEEC----CEEEEecCCCC
Confidence 999999999999999999999864 557899999999999999865 56778899999988887 78999999853
Q ss_pred CCCCcEEEEECccCCcCCCccccCCCCCCCcceecccCCCCccccccCCCCCCCCCChHHHHHHHHHHhhhcCCCccccc
Q 005493 376 EPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAIEQHGSGRKSLSE 455 (694)
Q Consensus 376 ~~~~~v~~~di~~~~w~~~w~~~~~~~~~~~~~fggs~~~~~l~~~~~~~~~~~~~~s~~~~~l~~~~~~~~~~~~~l~~ 455 (694)
.+ .+..+. .-++| .+ .++.+.++||
T Consensus 314 ~~-----------------~~~~Sp--------------------t~~~G-----~~-------------~~~~LiD~SD 338 (392)
T KOG4693|consen 314 LP-----------------CHPLSP--------------------TNYNG-----MI-------------SPSGLIDLSD 338 (392)
T ss_pred CC-----------------CCCCCc--------------------cccCC-----CC-------------Cccccccccc
Confidence 22 111111 00011 00 3456778999
Q ss_pred cccCCCCCCCCCcccccccc
Q 005493 456 FALVDPNPISGNVSLGKQFQ 475 (694)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~ 475 (694)
.++||++|+|+++++..-++
T Consensus 339 LHvLDF~PsLKTLa~~~Vl~ 358 (392)
T KOG4693|consen 339 LHVLDFAPSLKTLAMQSVLM 358 (392)
T ss_pred ceeeecChhHHHHHHHHHHH
Confidence 99999999999888766553
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=371.18 Aligned_cols=289 Identities=24% Similarity=0.357 Sum_probs=260.7
Q ss_pred ccccCCCCCCCCCCccccC--CCeEEEecCCCCCCCccccccCccccCCCCCCCCceEEeeccCCCCCCccceEEEEECC
Q 005493 22 SAQAIRSPIRPPKRNSNPN--SECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGN 99 (694)
Q Consensus 22 ~~~~s~~p~~~~~r~~~~~--~~~i~~~GG~~~~~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P~~R~~hs~~~~~~ 99 (694)
+..+..+|..+.+|+..+. .+.|+++||..+..........||+ .++.|..++ ++|.+|..++++++++
T Consensus 263 ~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~------~~~~w~~~a---~m~~~r~~~~~~~~~~ 333 (571)
T KOG4441|consen 263 HLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYDP------KTNEWSSLA---PMPSPRCRVGVAVLNG 333 (571)
T ss_pred hhCcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEecC------CcCcEeecC---CCCcccccccEEEECC
Confidence 3344555556677777773 4669999998876667777778998 899999998 8999999999999999
Q ss_pred EEEEEcCCC-CCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEE
Q 005493 100 KMIVVGGES-GNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTF 178 (694)
Q Consensus 100 ~lyv~GG~~-~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~y 178 (694)
+||++||++ +...++++++||+.+++|..+++| ..+|.+++++++++.||++||.+ .....+++++|
T Consensus 334 ~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M-----------~~~R~~~~v~~l~g~iYavGG~d-g~~~l~svE~Y 401 (571)
T KOG4441|consen 334 KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM-----------NTKRSDFGVAVLDGKLYAVGGFD-GEKSLNSVECY 401 (571)
T ss_pred EEEEEccccCCCcccceEEEecCCCCceeccCCc-----------cCccccceeEEECCEEEEEeccc-cccccccEEEe
Confidence 999999999 677899999999999999999985 44678899999999999999997 45578899999
Q ss_pred ECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEEC
Q 005493 179 DTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD 258 (694)
Q Consensus 179 d~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~ 258 (694)
|+.+++|..++ +|+.+|++|++++++++||++||.+.....++++++|||.+++|+.++ +|+.+|.++++++++
T Consensus 402 Dp~~~~W~~va---~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~~ 475 (571)
T KOG4441|consen 402 DPVTNKWTPVA---PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVLN 475 (571)
T ss_pred cCCCCcccccC---CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC---CcccccccceEEEEC
Confidence 99999999998 599999999999999999999999887668999999999999999998 999999999999999
Q ss_pred CcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCcEE
Q 005493 259 DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 338 (694)
Q Consensus 259 ~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~ 338 (694)
+. ||++||++....+..+++||+.+++|+.+.++ +.+|..++++++++++|++||+++....+.+.+||+.+++|+
T Consensus 476 ~~-iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m---~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 476 GK-IYVVGGFDGTSALSSVERYDPETNQWTMVAPM---TSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred CE-EEEECCccCCCccceEEEEcCCCCceeEcccC---ccccccccEEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 99 99999998877778899999999999999665 889999999999999999999999999999999999999999
Q ss_pred Eee
Q 005493 339 VAI 341 (694)
Q Consensus 339 ~l~ 341 (694)
...
T Consensus 552 ~~~ 554 (571)
T KOG4441|consen 552 EVT 554 (571)
T ss_pred eCC
Confidence 976
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=358.13 Aligned_cols=279 Identities=24% Similarity=0.350 Sum_probs=245.7
Q ss_pred CCCCccceEEEEECCEEEEEcCCCC-CCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEc
Q 005493 85 KPIPRFNHAAAVIGNKMIVVGGESG-NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVG 163 (694)
Q Consensus 85 ~P~~R~~hs~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~G 163 (694)
++.+|..... ...+.||++||... ....+.++.||+.++.|..++++ + .+|..++++++++.||++|
T Consensus 272 ~~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m----------~-~~r~~~~~~~~~~~lYv~G 339 (571)
T KOG4441|consen 272 MQSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM----------P-SPRCRVGVAVLNGKLYVVG 339 (571)
T ss_pred ccCCCcccCc-CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC----------C-cccccccEEEECCEEEEEc
Confidence 3444443332 45578999999986 66789999999999999999984 3 4556899999999999999
Q ss_pred cccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCC
Q 005493 164 GKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTG 243 (694)
Q Consensus 164 G~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g 243 (694)
|.+......+++|+||+.+++|..++ +|+.+|..+++++++|.||++||+++. ..++++++||+.+++|+.+.
T Consensus 340 G~~~~~~~l~~ve~YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va--- 412 (571)
T KOG4441|consen 340 GYDSGSDRLSSVERYDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVA--- 412 (571)
T ss_pred cccCCCcccceEEEecCCCCceeccC---CccCccccceeEEECCEEEEEeccccc-cccccEEEecCCCCcccccC---
Confidence 99754557789999999999999988 699999999999999999999999976 57899999999999999997
Q ss_pred CCCCCcceeEEEEECCcEEEEEcCCCCCC-CCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCC
Q 005493 244 TGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK 322 (694)
Q Consensus 244 ~~P~~R~~hs~~~~~~~~lyv~GG~~~~~-~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~ 322 (694)
+|+.+|++|+++++++. ||++||.+... +++.+++|||.+++|+.++++ +.+|.++++++++++||++||+++..
T Consensus 413 ~m~~~r~~~gv~~~~g~-iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~~~~~iYvvGG~~~~~ 488 (571)
T KOG4441|consen 413 PMLTRRSGHGVAVLGGK-LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM---NTRRSGFGVAVLNGKIYVVGGFDGTS 488 (571)
T ss_pred CCCcceeeeEEEEECCE-EEEEcCcCCCccccceEEEEcCCCCceeecCCc---ccccccceEEEECCEEEEECCccCCC
Confidence 89999999999999999 99999998776 999999999999999999876 89999999999999999999999866
Q ss_pred CcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCC-CCcEEEEECccCCcCCC
Q 005493 323 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 394 (694)
Q Consensus 323 ~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~-~~~v~~~di~~~~w~~~ 394 (694)
....+.+||+.+++|+.+. .+..+|..++++++. +.||++||+++.. .+.+++|||.+++|...
T Consensus 489 ~~~~VE~ydp~~~~W~~v~----~m~~~rs~~g~~~~~----~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 489 ALSSVERYDPETNQWTMVA----PMTSPRSAVGVVVLG----GKLYAVGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred ccceEEEEcCCCCceeEcc----cCccccccccEEEEC----CEEEEEecccCccccceeEEcCCCCCceeeC
Confidence 6677999999999999985 344577788888887 7999999998765 99999999999998664
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=327.61 Aligned_cols=285 Identities=19% Similarity=0.275 Sum_probs=222.7
Q ss_pred ccccCCCeEEEecCCCCC-CCccccccCccccCCCCCCCCceEEeeccCCCCCC-ccceEEEEECCEEEEEcCCCCCCCc
Q 005493 36 NSNPNSECVAPSSNHADD-RDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIP-RFNHAAAVIGNKMIVVGGESGNGLL 113 (694)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~-~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P~~-R~~hs~~~~~~~lyv~GG~~~~~~~ 113 (694)
+.+..++.||++||.... .........||+ .++.|+.+++.+..|.. +.+|++++++++||||||......+
T Consensus 27 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~------~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~ 100 (341)
T PLN02153 27 GIAVVGDKLYSFGGELKPNEHIDKDLYVFDF------NTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREF 100 (341)
T ss_pred eEEEECCEEEEECCccCCCCceeCcEEEEEC------CCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCcc
Confidence 444557889999997432 222344556777 88999998754444433 4589999999999999998877778
Q ss_pred CcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCC-----CCccEEEEEECCCCcEEEe
Q 005493 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG-----SDRVSVWTFDTETECWSVV 188 (694)
Q Consensus 114 ~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~ 188 (694)
+++++||+.+++|+.++++... ..+.+|.+|++++.+++||||||..... ...+++++||+.+++|..+
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~------~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l 174 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEE------GGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQL 174 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCC------CCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeC
Confidence 9999999999999998763110 1244678999999999999999986432 1346899999999999999
Q ss_pred eecCCCCCcceeeEEEEECCeEEEEccccCC-------CccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcE
Q 005493 189 EAKGDIPVARSGHTVVRASSVLILFGGEDGK-------RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKN 261 (694)
Q Consensus 189 ~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~-------~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~ 261 (694)
+..+..|.+|.+|++++++++|||+||.... ....+++++||+.+++|+++...|.+|.+|..|++++++++
T Consensus 175 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~- 253 (341)
T PLN02153 175 PDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKY- 253 (341)
T ss_pred CCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCE-
Confidence 8655567899999999999999999997521 12368899999999999999877889999999999999988
Q ss_pred EEEEcCCC---------CCCCCCeEEEEEcCCCcEEEeeccCCCCCC--CcceEEEEE--CCEEEEEcCCCCC-CCcCeE
Q 005493 262 LLIFGGSS---------KSKTLNDLYSLDFETMIWTRIKIRGFHPSP--RAGCCGVLC--GTKWYIAGGGSRK-KRHAET 327 (694)
Q Consensus 262 lyv~GG~~---------~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~--R~~~sav~~--~~~iyV~GG~~~~-~~~~~v 327 (694)
||||||.. .....+++|+||+.+++|+.+...+.+|.| |..++++.+ +++|||+||.... ....++
T Consensus 254 iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~ 333 (341)
T PLN02153 254 IIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDL 333 (341)
T ss_pred EEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcCcCCCCccccce
Confidence 99999973 123567999999999999999754444444 444444443 4589999998764 577899
Q ss_pred EEEECC
Q 005493 328 LIFDIL 333 (694)
Q Consensus 328 ~~yd~~ 333 (694)
|+|++.
T Consensus 334 ~~~~~~ 339 (341)
T PLN02153 334 YFYAVN 339 (341)
T ss_pred EEEecc
Confidence 999864
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=335.29 Aligned_cols=287 Identities=24% Similarity=0.338 Sum_probs=234.9
Q ss_pred cceEEEEECCEEEEEcCCCCCCCcCcE--EEEECCC----CcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEc
Q 005493 90 FNHAAAVIGNKMIVVGGESGNGLLDDV--QVLNFDR----FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVG 163 (694)
Q Consensus 90 ~~hs~~~~~~~lyv~GG~~~~~~~~~v--~~yd~~t----~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~G 163 (694)
.+...+..+++|+.|+|.... .++.+ +.+++.+ ++|..+.++. ..+.+|.+|++++++++||+||
T Consensus 112 ~g~~f~~~~~~ivgf~G~~~~-~~~~ig~y~~~~~~~~~~~~W~~~~~~~--------~~P~pR~~h~~~~~~~~iyv~G 182 (470)
T PLN02193 112 PGVKFVLQGGKIVGFHGRSTD-VLHSLGAYISLPSTPKLLGKWIKVEQKG--------EGPGLRCSHGIAQVGNKIYSFG 182 (470)
T ss_pred CCCEEEEcCCeEEEEeccCCC-cEEeeEEEEecCCChhhhceEEEcccCC--------CCCCCccccEEEEECCEEEEEC
Confidence 344445568999999998755 35554 4446645 7999988642 1244778999999999999999
Q ss_pred cccCCCC-CccEEEEEECCCCcEEEeeecCCCCC-cceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEccc
Q 005493 164 GKTDSGS-DRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHC 241 (694)
Q Consensus 164 G~~~~~~-~~~~v~~yd~~t~~W~~~~~~g~~p~-~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~ 241 (694)
|...... ..+++|+||+.+++|..+++.+++|. +|.+|++++++++||||||.+.. ..++++|+||+.+++|+.+.+
T Consensus 183 G~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~ 261 (470)
T PLN02193 183 GEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTP 261 (470)
T ss_pred CcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCc
Confidence 9854333 34689999999999998876666665 46788999999999999998765 468999999999999999986
Q ss_pred CCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCC
Q 005493 242 TGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK 321 (694)
Q Consensus 242 ~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~ 321 (694)
.+..|.+|+.|++++++++ ||||||.+....++++++||+.+++|+.++..+.+|.+|..|++++++++|||+||..+.
T Consensus 262 ~~~~P~~R~~h~~~~~~~~-iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~ 340 (470)
T PLN02193 262 VEEGPTPRSFHSMAADEEN-VYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC 340 (470)
T ss_pred CCCCCCCccceEEEEECCE-EEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC
Confidence 5556999999999999888 999999987778899999999999999998766678899999999999999999998654
Q ss_pred CCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCC----------CCCCcEEEEECccCCc
Q 005493 322 KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK----------EPSNQVEVLSIEKNES 391 (694)
Q Consensus 322 ~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~----------~~~~~v~~~di~~~~w 391 (694)
..+++++||+.+++|+.++.. ...|.+|..|+++++. +.||||||... ...+++|+||+.+++|
T Consensus 341 -~~~dv~~yD~~t~~W~~~~~~-g~~P~~R~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 341 -EVDDVHYYDPVQDKWTQVETF-GVRPSERSVFASAAVG----KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred -ccCceEEEECCCCEEEEeccC-CCCCCCcceeEEEEEC----CEEEEECCccCCccccccCccceeccEEEEEcCcCEE
Confidence 368899999999999998642 2457789999998886 68999999853 1357899999999998
Q ss_pred CC
Q 005493 392 SM 393 (694)
Q Consensus 392 ~~ 393 (694)
..
T Consensus 415 ~~ 416 (470)
T PLN02193 415 ER 416 (470)
T ss_pred EE
Confidence 64
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=297.14 Aligned_cols=275 Identities=24% Similarity=0.420 Sum_probs=233.5
Q ss_pred CCCccccCCCeEEEecCCCCCCC--ccccccCccccCCCCCCCCceEEeecc----------CCCCCCccceEEEEECCE
Q 005493 33 PKRNSNPNSECVAPSSNHADDRD--CECTIAGPEVSNGTSGNSENWMVLSIA----------GDKPIPRFNHAAAVIGNK 100 (694)
Q Consensus 33 ~~r~~~~~~~~i~~~GG~~~~~~--~~~~~~~~d~~~~~~~~t~~W~~l~~~----------~~~P~~R~~hs~~~~~~~ 100 (694)
--|+++++|..||.|||.-.+-+ .....++--++ ..+.+|+.+++. +-.|..|+||+++.++++
T Consensus 15 VNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lN----a~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~ 90 (392)
T KOG4693|consen 15 VNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLN----AENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDK 90 (392)
T ss_pred ccceeeeecceEEecCCcccccccccCCcceeEEee----ccceeEEecCcccccccccCCCCccchhhcCceEEEEcce
Confidence 33588999999999999544333 33333322222 288999999751 124567999999999999
Q ss_pred EEEEcCCCC-CCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCC-CccEEEEE
Q 005493 101 MIVVGGESG-NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGS-DRVSVWTF 178 (694)
Q Consensus 101 lyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~-~~~~v~~y 178 (694)
+||+||.++ .+..|.++.|||+++.|......+ .-+++|.+|++|++++.+|+|||+..... ..++++.+
T Consensus 91 ~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G--------~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~l 162 (392)
T KOG4693|consen 91 AYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEG--------FVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVL 162 (392)
T ss_pred EEEEcCccCcccccceeeeeccccccccccceee--------ecCCccCCceeeEECcEEEEecChHHHHHhhhccceeE
Confidence 999999976 567899999999999999877643 33568899999999999999999976433 46789999
Q ss_pred ECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCC--------CccccceEEeeCCCCcEEEcccCCCCCCCcc
Q 005493 179 DTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK--------RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (694)
Q Consensus 179 d~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~--------~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~ 250 (694)
|+.|-+|+.+.+.|+.|.-|..|+++++++.+|||||+... ..+.+.+..+|+.|..|...+..+-.|.+|.
T Consensus 163 d~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR 242 (392)
T KOG4693|consen 163 DFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR 242 (392)
T ss_pred eccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc
Confidence 99999999999999999999999999999999999998643 2467889999999999999988888999999
Q ss_pred eeEEEEECCcEEEEEcCCCC--CCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCC
Q 005493 251 NHVAALYDDKNLLIFGGSSK--SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR 320 (694)
Q Consensus 251 ~hs~~~~~~~~lyv~GG~~~--~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~ 320 (694)
.|++.+++++ +|||||+.+ ..-+|++|.||+.+..|..+...|.-|.+|..+++++.++++|+|||.+-
T Consensus 243 SHS~fvYng~-~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 243 SHSTFVYNGK-MYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred ccceEEEcce-EEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 9999999999 999999976 45689999999999999999999999999999999999999999999653
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=341.96 Aligned_cols=264 Identities=17% Similarity=0.235 Sum_probs=222.6
Q ss_pred CeEEEecCCCCCCCccccccCccccCCCCCCCCceEEeeccCCCCCCccceEEEEECCEEEEEcCCC-CCCCcCcEEEEE
Q 005493 42 ECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGES-GNGLLDDVQVLN 120 (694)
Q Consensus 42 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~-~~~~~~~v~~yd 120 (694)
..+++.||... . .......|++ .++.|..++ ++|.+|.+|++++++++|||+||.. .....+++++||
T Consensus 258 ~~l~~~~g~~~-~-~~~~v~~yd~------~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd 326 (557)
T PHA02713 258 LCLVCHDTKYN-V-CNPCILVYNI------NTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKIN 326 (557)
T ss_pred eEEEEecCccc-c-CCCCEEEEeC------CCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEE
Confidence 34666666321 1 1123345777 899999998 7899999999999999999999975 344678999999
Q ss_pred CCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCccee
Q 005493 121 FDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG 200 (694)
Q Consensus 121 ~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~ 200 (694)
+.++.|..++++ +.+|..+++++++++||++||... ....+++++||+.+++|..++ +||.+|.+
T Consensus 327 ~~~n~W~~~~~m-----------~~~R~~~~~~~~~g~IYviGG~~~-~~~~~sve~Ydp~~~~W~~~~---~mp~~r~~ 391 (557)
T PHA02713 327 IENKIHVELPPM-----------IKNRCRFSLAVIDDTIYAIGGQNG-TNVERTIECYTMGDDKWKMLP---DMPIALSS 391 (557)
T ss_pred CCCCeEeeCCCC-----------cchhhceeEEEECCEEEEECCcCC-CCCCceEEEEECCCCeEEECC---CCCccccc
Confidence 999999999874 346678999999999999999854 335678999999999999988 59999999
Q ss_pred eEEEEECCeEEEEccccCCC-----------------ccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEE
Q 005493 201 HTVVRASSVLILFGGEDGKR-----------------RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLL 263 (694)
Q Consensus 201 ~~~~~~~~~lyv~GG~~~~~-----------------~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~ly 263 (694)
+++++++++||++||.+... ..++++++|||.+++|+.++ +||.+|..+++++++++ ||
T Consensus 392 ~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~-IY 467 (557)
T PHA02713 392 YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDD-IY 467 (557)
T ss_pred ccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCE-EE
Confidence 99999999999999986431 13678999999999999997 89999999999999999 99
Q ss_pred EEcCCCCCC-CCCeEEEEEcCC-CcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCcEEEee
Q 005493 264 IFGGSSKSK-TLNDLYSLDFET-MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (694)
Q Consensus 264 v~GG~~~~~-~~~dv~~yd~~t-~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~ 341 (694)
|+||.+... ..+.+++||+.+ ++|+.++++ |.+|..+++++++++||++||+++. ..+.+||+.+++|+.+.
T Consensus 468 v~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m---~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~ 541 (557)
T PHA02713 468 VVCDIKDEKNVKTCIFRYNTNTYNGWELITTT---ESRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHIC 541 (557)
T ss_pred EEeCCCCCCccceeEEEecCCCCCCeeEcccc---CcccccceeEEECCEEEEEeeecce---eehhhcCcccccccchh
Confidence 999986433 335689999999 899999765 8999999999999999999998863 36889999999999876
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=331.78 Aligned_cols=311 Identities=31% Similarity=0.503 Sum_probs=268.2
Q ss_pred ccCCCCCCccceEEEEECCEEEEEcCCCCCCCcCc--EEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCE
Q 005493 81 IAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDD--VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKK 158 (694)
Q Consensus 81 ~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~~~~~--v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~ 158 (694)
+.+..|.+|.+|+++.+++++|||||........+ +|+||..+..|......+ ..++++.+|++++++++
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g--------~~p~~r~g~~~~~~~~~ 124 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATG--------DEPSPRYGHSLSAVGDK 124 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccC--------CCCCcccceeEEEECCe
Confidence 45678999999999999999999999876665555 999999999999887753 23468899999999999
Q ss_pred EEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEE
Q 005493 159 VLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP 238 (694)
Q Consensus 159 Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 238 (694)
||+|||........++++.||+.|++|..+.+.+++|++|.+|+++++++++|||||.+......+++|+||+.+.+|.+
T Consensus 125 l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~ 204 (482)
T KOG0379|consen 125 LYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSE 204 (482)
T ss_pred EEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeecccccccee
Confidence 99999998656678899999999999999999999999999999999999999999999887689999999999999999
Q ss_pred cccCCCCCCCcceeEEEEECCcEEEEEcCCC-CCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcC
Q 005493 239 LHCTGTGPSPRSNHVAALYDDKNLLIFGGSS-KSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGG 317 (694)
Q Consensus 239 l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~-~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG 317 (694)
+.+.|..|.||++|++++++++ ++||||.. ...+++|+|.||+.+..|..+...+..|.+|++|++++.+++++|+||
T Consensus 205 ~~~~g~~P~pR~gH~~~~~~~~-~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG 283 (482)
T KOG0379|consen 205 LDTQGEAPSPRYGHAMVVVGNK-LLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGG 283 (482)
T ss_pred cccCCCCCCCCCCceEEEECCe-EEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcC
Confidence 9999999999999999999999 66666665 788999999999999999999988999999999999999999999999
Q ss_pred CCCC-C-CcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCC--CCCCcEEEEECccCCcCC
Q 005493 318 GSRK-K-RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK--EPSNQVEVLSIEKNESSM 393 (694)
Q Consensus 318 ~~~~-~-~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~--~~~~~v~~~di~~~~w~~ 393 (694)
.... . .+.++|.||+.+..|..+.......|.++..+....+...+...+.++||... ...+.++...+....-..
T Consensus 284 ~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (482)
T KOG0379|consen 284 GTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQIKLLSRKN 363 (482)
T ss_pred CcccccccccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhcccccccccccCC
Confidence 8874 3 68899999999999999876543567788899988888777777888888543 346666666665555444
Q ss_pred CccccCC
Q 005493 394 GRRSTPN 400 (694)
Q Consensus 394 ~w~~~~~ 400 (694)
.|.....
T Consensus 364 ~~~~~~~ 370 (482)
T KOG0379|consen 364 EVQEPGT 370 (482)
T ss_pred ccccccc
Confidence 4554443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=339.88 Aligned_cols=262 Identities=11% Similarity=0.146 Sum_probs=220.5
Q ss_pred EEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEEE
Q 005493 100 KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 179 (694)
Q Consensus 100 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd 179 (694)
.+++.||... .....+++||+.++.|..++++ |. ++..+++++++++||++||........+++++||
T Consensus 259 ~l~~~~g~~~-~~~~~v~~yd~~~~~W~~l~~m----------p~-~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd 326 (557)
T PHA02713 259 CLVCHDTKYN-VCNPCILVYNINTMEYSVISTI----------PN-HIINYASAIVDNEIIIAGGYNFNNPSLNKVYKIN 326 (557)
T ss_pred EEEEecCccc-cCCCCEEEEeCCCCeEEECCCC----------Cc-cccceEEEEECCEEEEEcCCCCCCCccceEEEEE
Confidence 3555665321 1335789999999999999873 33 4567889999999999999854344568999999
Q ss_pred CCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECC
Q 005493 180 TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 259 (694)
Q Consensus 180 ~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~ 259 (694)
+.+++|..++ +||.+|..+++++++++||++||.++. ..++++++||+.+++|+.++ +||.+|.+++++++++
T Consensus 327 ~~~n~W~~~~---~m~~~R~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g 399 (557)
T PHA02713 327 IENKIHVELP---PMIKNRCRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQ 399 (557)
T ss_pred CCCCeEeeCC---CCcchhhceeEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECC---CCCcccccccEEEECC
Confidence 9999999988 699999999999999999999998754 35788999999999999987 8999999999999998
Q ss_pred cEEEEEcCCCCC------------------CCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCC
Q 005493 260 KNLLIFGGSSKS------------------KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK 321 (694)
Q Consensus 260 ~~lyv~GG~~~~------------------~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~ 321 (694)
+ ||++||.+.. ..++.+++||+.+++|+.++++ |.+|..+++++++++|||+||.+..
T Consensus 400 ~-IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~~~~IYv~GG~~~~ 475 (557)
T PHA02713 400 Y-IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSHKDDIYVVCDIKDE 475 (557)
T ss_pred E-EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEEECCEEEEEeCCCCC
Confidence 8 9999998632 1367899999999999999765 8899999999999999999998754
Q ss_pred CCc-CeEEEEECCC-CcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCCcCCC
Q 005493 322 KRH-AETLIFDILK-GEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESSMG 394 (694)
Q Consensus 322 ~~~-~~v~~yd~~t-~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~w~~~ 394 (694)
... +.+++|||.+ ++|+.++ +.|.+|..++++++. ++||++||+++. ..+++||+.+++|+..
T Consensus 476 ~~~~~~ve~Ydp~~~~~W~~~~----~m~~~r~~~~~~~~~----~~iyv~Gg~~~~--~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 476 KNVKTCIFRYNTNTYNGWELIT----TTESRLSALHTILHD----NTIMMLHCYESY--MLQDTFNVYTYEWNHI 540 (557)
T ss_pred CccceeEEEecCCCCCCeeEcc----ccCcccccceeEEEC----CEEEEEeeecce--eehhhcCcccccccch
Confidence 333 4579999999 8999986 346688899999997 799999999874 4799999999998764
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=307.37 Aligned_cols=274 Identities=17% Similarity=0.224 Sum_probs=211.4
Q ss_pred CCCCCccceEEEEECCEEEEEcCCCCCCCcCcEEEEEC--CCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEE
Q 005493 84 DKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNF--DRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLL 161 (694)
Q Consensus 84 ~~P~~R~~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~--~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv 161 (694)
++|.+|..+++++++++|||+||... +++++||+ .+++|..+++ ++..+|..+++++++++||+
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~----------~p~~~R~~~~~~~~~~~iYv 68 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIAD----------FPGGPRNQAVAAAIDGKLYV 68 (346)
T ss_pred CCCccccCceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCC----------CCCCCcccceEEEECCEEEE
Confidence 68899999999899999999999742 67899996 5689999987 34346778999999999999
Q ss_pred EccccCCC-----CCccEEEEEECCCCcEEEeeecCCCCCcceeeEEE-EECCeEEEEccccCCC---------------
Q 005493 162 VGGKTDSG-----SDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKR--------------- 220 (694)
Q Consensus 162 ~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~-~~~~~lyv~GG~~~~~--------------- 220 (694)
+||..... ..++++|+||+.+++|+.++. .+|.+|.+|+++ +++++||++||.+...
T Consensus 69 ~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 146 (346)
T TIGR03547 69 FGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDS 146 (346)
T ss_pred EeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccc
Confidence 99985322 136789999999999999873 467888888776 7899999999986320
Q ss_pred ------------------ccccceEEeeCCCCcEEEcccCCCCCC-CcceeEEEEECCcEEEEEcCCCCCC-CCCeEEEE
Q 005493 221 ------------------RKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSL 280 (694)
Q Consensus 221 ------------------~~~~~v~~yd~~t~~W~~l~~~g~~P~-~R~~hs~~~~~~~~lyv~GG~~~~~-~~~dv~~y 280 (694)
..++++++||+.+++|+.+. ++|. +|.++++++++++ |||+||..... ...+++.|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~y 222 (346)
T TIGR03547 147 EPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNK-LLLINGEIKPGLRTAEVKQY 222 (346)
T ss_pred hhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCE-EEEEeeeeCCCccchheEEE
Confidence 02478999999999999997 7885 6899999999988 99999985433 23456666
Q ss_pred E--cCCCcEEEeeccCCC----CCCCcceEEEEECCEEEEEcCCCCCC-----------------CcCeEEEEECCCCcE
Q 005493 281 D--FETMIWTRIKIRGFH----PSPRAGCCGVLCGTKWYIAGGGSRKK-----------------RHAETLIFDILKGEW 337 (694)
Q Consensus 281 d--~~t~~W~~l~~~~~~----p~~R~~~sav~~~~~iyV~GG~~~~~-----------------~~~~v~~yd~~t~~W 337 (694)
| +++++|+.++.++.+ +.++.+|++++++++|||+||..... ....+.+||+.+++|
T Consensus 223 ~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W 302 (346)
T TIGR03547 223 LFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKW 302 (346)
T ss_pred EecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcc
Confidence 5 467899999876321 11234666788899999999975211 123578999999999
Q ss_pred EEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCC--CCCcEEEEE
Q 005493 338 SVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE--PSNQVEVLS 385 (694)
Q Consensus 338 ~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~--~~~~v~~~d 385 (694)
+.+.. .|.++..++++++. +.|||+||.... ..++|+.+.
T Consensus 303 ~~~~~----lp~~~~~~~~~~~~----~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 303 SKVGK----LPQGLAYGVSVSWN----NGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred cccCC----CCCCceeeEEEEcC----CEEEEEeccCCCCCEeeeEEEEE
Confidence 98863 34567677666665 799999998653 377887665
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=322.15 Aligned_cols=245 Identities=18% Similarity=0.291 Sum_probs=210.7
Q ss_pred CCCceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCCC-CcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccce
Q 005493 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNG-LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~ 150 (694)
....|..++ +.|. +..|++++++++|||+||..... ..+++++||+.+++|..++++ +.+|.+|
T Consensus 272 ~~~~~~~~~---~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-----------~~~R~~~ 336 (534)
T PHA03098 272 PLSEINTII---DIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL-----------IYPRKNP 336 (534)
T ss_pred hhhhccccc---Cccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC-----------Ccccccc
Confidence 577888885 4443 45578899999999999987544 567999999999999998763 3356789
Q ss_pred EEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEee
Q 005493 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFD 230 (694)
Q Consensus 151 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd 230 (694)
++++++++||++||... ....+++++||+.+++|+.++ +||.+|++|+++.++++||++||.......++++++||
T Consensus 337 ~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd 412 (534)
T PHA03098 337 GVTVFNNRIYVIGGIYN-SISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFS 412 (534)
T ss_pred eEEEECCEEEEEeCCCC-CEecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEe
Confidence 99999999999999863 345678999999999999987 59999999999999999999999866555689999999
Q ss_pred CCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCC---CCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEE
Q 005493 231 LKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK---TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL 307 (694)
Q Consensus 231 ~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~---~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~ 307 (694)
+.+++|+.+. ++|.+|.+|+++++++. |||+||.+... .++.+++||+.+++|+.++.+ |.+|.+++++.
T Consensus 413 ~~t~~W~~~~---~~p~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~ 485 (534)
T PHA03098 413 LNTNKWSKGS---PLPISHYGGCAIYHDGK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSL---NFPRINASLCI 485 (534)
T ss_pred CCCCeeeecC---CCCccccCceEEEECCE-EEEECCccCCCCCcccceEEEecCCCCceeeCCCC---CcccccceEEE
Confidence 9999999987 89999999999999988 99999986432 367799999999999999654 77899999999
Q ss_pred ECCEEEEEcCCCCCCCcCeEEEEECCCCcEEEeec
Q 005493 308 CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAIT 342 (694)
Q Consensus 308 ~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~ 342 (694)
++++|||+||.......+++++||+.+++|..++.
T Consensus 486 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 486 FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred ECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 99999999998876667889999999999998864
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=298.07 Aligned_cols=264 Identities=19% Similarity=0.344 Sum_probs=205.5
Q ss_pred CCccceEEEEECCEEEEEcCCCCCC----------CcCcEEEEE-CC-CCcEEEcccccccCCCCCCCCCCCccceEEEE
Q 005493 87 IPRFNHAAAVIGNKMIVVGGESGNG----------LLDDVQVLN-FD-RFSWTAASSKLYLSPSSLPLKIPACRGHSLIS 154 (694)
Q Consensus 87 ~~R~~hs~~~~~~~lyv~GG~~~~~----------~~~~v~~yd-~~-t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~ 154 (694)
..+.++.++++++.|||+||.+... .++++++|+ +. +..|..+++ +|. +|..+++++
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~----------lp~-~r~~~~~~~ 70 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQ----------LPY-EAAYGASVS 70 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEccc----------CCc-cccceEEEE
Confidence 4678899999999999999986542 356888886 33 237999887 344 445567788
Q ss_pred ECCEEEEEccccCCCCCccEEEEEECCCCcEE-EeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCC
Q 005493 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS 233 (694)
Q Consensus 155 ~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t 233 (694)
++++||++||... ....+++|+||+.+++|. .....++||.+|..|++++++++|||+||.... ..++++++||+.+
T Consensus 71 ~~~~lyviGG~~~-~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~ 148 (323)
T TIGR03548 71 VENGIYYIGGSNS-SERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLET 148 (323)
T ss_pred ECCEEEEEcCCCC-CCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCC
Confidence 8999999999864 345689999999999983 112223799999999999999999999998543 4579999999999
Q ss_pred CcEEEcccCCCCC-CCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCC--CCCCCcceEEEE-EC
Q 005493 234 LTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF--HPSPRAGCCGVL-CG 309 (694)
Q Consensus 234 ~~W~~l~~~g~~P-~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~--~p~~R~~~sav~-~~ 309 (694)
++|+.++ ++| .+|..|++++++++ |||+||.+.. ...++++||+++++|+.++.++. .|.++..+++++ .+
T Consensus 149 ~~W~~~~---~~p~~~r~~~~~~~~~~~-iYv~GG~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~ 223 (323)
T TIGR03548 149 QEWFELP---DFPGEPRVQPVCVKLQNE-LYVFGGGSNI-AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINE 223 (323)
T ss_pred CCeeECC---CCCCCCCCcceEEEECCE-EEEEcCCCCc-cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECC
Confidence 9999987 666 47999999899988 9999998653 34678999999999999987532 234444555444 47
Q ss_pred CEEEEEcCCCCCC--------------------------------CcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEE
Q 005493 310 TKWYIAGGGSRKK--------------------------------RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLV 357 (694)
Q Consensus 310 ~~iyV~GG~~~~~--------------------------------~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~ 357 (694)
++|||+||.+... ..+++++||+.+++|+.++..| ..+|.+++++
T Consensus 224 ~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p---~~~r~~~~~~ 300 (323)
T TIGR03548 224 SLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP---FFARCGAALL 300 (323)
T ss_pred CEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc---ccccCchheE
Confidence 9999999986421 1367999999999999986322 2478888888
Q ss_pred EEeecCCcEEEEEcCCCC
Q 005493 358 LVQHKEKDFLVAFGGIKK 375 (694)
Q Consensus 358 ~v~~~~~~~i~v~GG~~~ 375 (694)
.+. +.||++||...
T Consensus 301 ~~~----~~iyv~GG~~~ 314 (323)
T TIGR03548 301 LTG----NNIFSINGELK 314 (323)
T ss_pred EEC----CEEEEEecccc
Confidence 886 68999999743
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=303.61 Aligned_cols=285 Identities=18% Similarity=0.260 Sum_probs=218.6
Q ss_pred CCceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCCCCcCcEEEEECC--CCcEEEcccccccCCCCCCCCCCCccce
Q 005493 73 SENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPACRGH 150 (694)
Q Consensus 73 t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~p~~~~~~~p~r~~~ 150 (694)
.-.|+.++ ++|.+|..+++++++++|||+||... +.+++||+. ++.|..+++ ++.++|.++
T Consensus 16 ~~~~~~l~---~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~----------~p~~~r~~~ 78 (376)
T PRK14131 16 AANAEQLP---DLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAA----------FPGGPREQA 78 (376)
T ss_pred ceecccCC---CCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCc----------CCCCCcccc
Confidence 34566676 88999998899999999999999743 458999987 478999887 444567889
Q ss_pred EEEEECCEEEEEccccC-C----CCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEE-ECCeEEEEccccCCC----
Q 005493 151 SLISWGKKVLLVGGKTD-S----GSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKR---- 220 (694)
Q Consensus 151 s~v~~~~~Iyv~GG~~~-~----~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~~lyv~GG~~~~~---- 220 (694)
+++.++++|||+||... . ....+++|+||+.+++|+.++. .+|.++.+|+++. .+++||++||.+...
T Consensus 79 ~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~ 156 (376)
T PRK14131 79 VAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGY 156 (376)
T ss_pred eEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHH
Confidence 99999999999999864 1 1235789999999999999874 3577888888777 799999999985310
Q ss_pred -----------------------------ccccceEEeeCCCCcEEEcccCCCCCC-CcceeEEEEECCcEEEEEcCCCC
Q 005493 221 -----------------------------RKLNDLHMFDLKSLTWLPLHCTGTGPS-PRSNHVAALYDDKNLLIFGGSSK 270 (694)
Q Consensus 221 -----------------------------~~~~~v~~yd~~t~~W~~l~~~g~~P~-~R~~hs~~~~~~~~lyv~GG~~~ 270 (694)
...+++++||+.+++|+.+. ++|. +|.+|+++.++++ |||+||...
T Consensus 157 ~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~-iYv~GG~~~ 232 (376)
T PRK14131 157 FEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNK-LWLINGEIK 232 (376)
T ss_pred HhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCE-EEEEeeeEC
Confidence 12478999999999999986 7885 7888998888888 999999743
Q ss_pred C-CCCCeEE--EEEcCCCcEEEeeccCCCCCCCc--------ceEEEEECCEEEEEcCCCCCC-----------------
Q 005493 271 S-KTLNDLY--SLDFETMIWTRIKIRGFHPSPRA--------GCCGVLCGTKWYIAGGGSRKK----------------- 322 (694)
Q Consensus 271 ~-~~~~dv~--~yd~~t~~W~~l~~~~~~p~~R~--------~~sav~~~~~iyV~GG~~~~~----------------- 322 (694)
. ....++| .||+++++|+.++.+ |.+|. ++.+++++++|||+||.+...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~ 309 (376)
T PRK14131 233 PGLRTDAVKQGKFTGNNLKWQKLPDL---PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLK 309 (376)
T ss_pred CCcCChhheEEEecCCCcceeecCCC---CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCc
Confidence 2 2234444 557789999999876 44432 333567899999999975321
Q ss_pred CcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCC--CCCCcEEEEECccCCc
Q 005493 323 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK--EPSNQVEVLSIEKNES 391 (694)
Q Consensus 323 ~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~--~~~~~v~~~di~~~~w 391 (694)
....+.+||+.+++|+.+. ..|.+|..++++.+. +.|||+||... ...++|++|.+..+.+
T Consensus 310 ~~~~~e~yd~~~~~W~~~~----~lp~~r~~~~av~~~----~~iyv~GG~~~~~~~~~~v~~~~~~~~~~ 372 (376)
T PRK14131 310 KSWSDEIYALVNGKWQKVG----ELPQGLAYGVSVSWN----NGVLLIGGETAGGKAVSDVTLLSWDGKKL 372 (376)
T ss_pred ceeehheEEecCCcccccC----cCCCCccceEEEEeC----CEEEEEcCCCCCCcEeeeEEEEEEcCCEE
Confidence 0123568999999999876 345677788777776 78999999854 3488999999886653
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=297.20 Aligned_cols=264 Identities=20% Similarity=0.286 Sum_probs=201.6
Q ss_pred ccccCCCeEEEecCCCCCCCccccccCccccCCCCCCCCceEEeeccCCCC-CCccceEEEEECCEEEEEcCCCCCC---
Q 005493 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKP-IPRFNHAAAVIGNKMIVVGGESGNG--- 111 (694)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P-~~R~~hs~~~~~~~lyv~GG~~~~~--- 111 (694)
..+..++.||++||... ....+|++. ..++.|..++ ++| .+|.+|++++++++|||+||.....
T Consensus 12 ~~~~~~~~vyv~GG~~~-----~~~~~~d~~----~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~ 79 (346)
T TIGR03547 12 TGAIIGDKVYVGLGSAG-----TSWYKLDLK----KPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEG 79 (346)
T ss_pred eEEEECCEEEEEccccC-----CeeEEEECC----CCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCCCCC
Confidence 33345788999999642 122334431 1567899998 788 5899999999999999999985322
Q ss_pred ---CcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEE-EECCEEEEEccccCCC------------------
Q 005493 112 ---LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSG------------------ 169 (694)
Q Consensus 112 ---~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v-~~~~~Iyv~GG~~~~~------------------ 169 (694)
.++++++||+.+++|+.++. ..+..+.+++++ +++++||++||.....
T Consensus 80 ~~~~~~~v~~Yd~~~~~W~~~~~----------~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 149 (346)
T TIGR03547 80 SPQVFDDVYRYDPKKNSWQKLDT----------RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPK 149 (346)
T ss_pred cceecccEEEEECCCCEEecCCC----------CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhh
Confidence 47899999999999999874 123345667766 6899999999985310
Q ss_pred ---------------CCccEEEEEECCCCcEEEeeecCCCCC-cceeeEEEEECCeEEEEccccCCCccccceEEee--C
Q 005493 170 ---------------SDRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFD--L 231 (694)
Q Consensus 170 ---------------~~~~~v~~yd~~t~~W~~~~~~g~~p~-~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd--~ 231 (694)
...+++++||+.+++|+.++ +||. +|.+++++.++++|||+||.........+++.|| +
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~ 226 (346)
T TIGR03547 150 DKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTG 226 (346)
T ss_pred hhhHHHHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecC
Confidence 01368999999999999987 5885 6899999999999999999865433345566665 4
Q ss_pred CCCcEEEcccCCCCCCCc-------ceeEEEEECCcEEEEEcCCCCCC-----------------CCCeEEEEEcCCCcE
Q 005493 232 KSLTWLPLHCTGTGPSPR-------SNHVAALYDDKNLLIFGGSSKSK-----------------TLNDLYSLDFETMIW 287 (694)
Q Consensus 232 ~t~~W~~l~~~g~~P~~R-------~~hs~~~~~~~~lyv~GG~~~~~-----------------~~~dv~~yd~~t~~W 287 (694)
.+++|+.+. +||.+| .+|++++++++ |||+||..... ....+++||+++++|
T Consensus 227 ~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~~-Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W 302 (346)
T TIGR03547 227 GKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNGV-LLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKW 302 (346)
T ss_pred CCceeeecC---CCCCCCCCccccccEEeeeEECCE-EEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcc
Confidence 677999987 676654 46667788888 99999975211 124689999999999
Q ss_pred EEeeccCCCCCCCcceEEEEECCEEEEEcCCCCC-CCcCeEEEEE
Q 005493 288 TRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-KRHAETLIFD 331 (694)
Q Consensus 288 ~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~-~~~~~v~~yd 331 (694)
+.+..+ |.+|..+++++++++|||+||.+.. ..+++++.|.
T Consensus 303 ~~~~~l---p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 303 SKVGKL---PQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred cccCCC---CCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 999765 8889999888899999999998753 5567777664
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=312.91 Aligned_cols=262 Identities=18% Similarity=0.215 Sum_probs=217.7
Q ss_pred EEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEEE
Q 005493 100 KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFD 179 (694)
Q Consensus 100 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd 179 (694)
.+++.||.. .....+..|++.+.+|..+++ .+.+..|+++++++.||++||........+++++||
T Consensus 252 ~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd 317 (534)
T PHA03098 252 IIYIHITMS--IFTYNYITNYSPLSEINTIID------------IHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYD 317 (534)
T ss_pred ceEeecccc--hhhceeeecchhhhhcccccC------------ccccccceEEEECCEEEEECCCcCCCCeeccEEEEe
Confidence 455556544 234456678888889988765 223445789999999999999976555667999999
Q ss_pred CCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECC
Q 005493 180 TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 259 (694)
Q Consensus 180 ~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~ 259 (694)
+.+++|..++ +||.+|.+|+++.++++||++||.+.. ...+++++||+.+++|+.++ ++|.+|++|+++++++
T Consensus 318 ~~~~~W~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~ 390 (534)
T PHA03098 318 TKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNN 390 (534)
T ss_pred CCCCeeeECC---CCCcccccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCC---CcCcCCccceEEEECC
Confidence 9999999887 699999999999999999999999754 46789999999999999987 8999999999999998
Q ss_pred cEEEEEcCCCC-CCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCC---CcCeEEEEECCCC
Q 005493 260 KNLLIFGGSSK-SKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK---RHAETLIFDILKG 335 (694)
Q Consensus 260 ~~lyv~GG~~~-~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~---~~~~v~~yd~~t~ 335 (694)
+ |||+||... ...++++++||+.+++|+.++++ |.+|.+|+++.++++|||+||.+... ..+.+++||+.++
T Consensus 391 ~-iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 391 L-IYVIGGISKNDELLKTVECFSLNTNKWSKGSPL---PISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred E-EEEECCcCCCCcccceEEEEeCCCCeeeecCCC---CccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 8 999999743 34578999999999999998654 88999999999999999999976543 2567999999999
Q ss_pred cEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCC-CCcEEEEECccCCcCCC
Q 005493 336 EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSMG 394 (694)
Q Consensus 336 ~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~-~~~v~~~di~~~~w~~~ 394 (694)
+|+.++. .+.+|.+++++.+. +.||++||..... .+.+++||+.++.|...
T Consensus 467 ~W~~~~~----~~~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 467 KWTELSS----LNFPRINASLCIFN----NKIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred ceeeCCC----CCcccccceEEEEC----CEEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 9999863 34567788877764 6899999997655 78999999999998654
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-32 Score=295.22 Aligned_cols=272 Identities=20% Similarity=0.271 Sum_probs=206.8
Q ss_pred ccccCCCeEEEecCCCCCCCccccccCccccCCCCCCCCceEEeeccCCCC-CCccceEEEEECCEEEEEcCCCC-----
Q 005493 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKP-IPRFNHAAAVIGNKMIVVGGESG----- 109 (694)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P-~~R~~hs~~~~~~~lyv~GG~~~----- 109 (694)
+....++.||++||.... ...+|++. ..++.|..++ ++| .+|.++++++++++|||+||...
T Consensus 33 ~~~~~~~~iyv~gG~~~~-----~~~~~d~~----~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~ 100 (376)
T PRK14131 33 TGAIDNNTVYVGLGSAGT-----SWYKLDLN----APSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEG 100 (376)
T ss_pred eEEEECCEEEEEeCCCCC-----eEEEEECC----CCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCCCCCCCCC
Confidence 344447889999996321 12345541 1357899997 566 58999999999999999999764
Q ss_pred -CCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEE-ECCEEEEEccccCCC------------------
Q 005493 110 -NGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSG------------------ 169 (694)
Q Consensus 110 -~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~-~~~~Iyv~GG~~~~~------------------ 169 (694)
...++++++||+.+++|+.+++. .+..+.+|++++ .+++||++||.....
T Consensus 101 ~~~~~~~v~~YD~~~n~W~~~~~~----------~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~ 170 (376)
T PRK14131 101 SPQVFDDVYKYDPKTNSWQKLDTR----------SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPK 170 (376)
T ss_pred ceeEcccEEEEeCCCCEEEeCCCC----------CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhh
Confidence 13468999999999999998752 233445777776 899999999975310
Q ss_pred ---------------CCccEEEEEECCCCcEEEeeecCCCCC-cceeeEEEEECCeEEEEccccCCCccccceE--EeeC
Q 005493 170 ---------------SDRVSVWTFDTETECWSVVEAKGDIPV-ARSGHTVVRASSVLILFGGEDGKRRKLNDLH--MFDL 231 (694)
Q Consensus 170 ---------------~~~~~v~~yd~~t~~W~~~~~~g~~p~-~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~--~yd~ 231 (694)
...+++++||+.+++|+.++ ++|. +|.+|+++.++++|||+||....+....++| .||+
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~ 247 (376)
T PRK14131 171 DKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTG 247 (376)
T ss_pred hhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecC
Confidence 02468999999999999887 5785 7888999999999999999865433345555 4577
Q ss_pred CCCcEEEcccCCCCCCCcc--------eeEEEEECCcEEEEEcCCCCCC-----------------CCCeEEEEEcCCCc
Q 005493 232 KSLTWLPLHCTGTGPSPRS--------NHVAALYDDKNLLIFGGSSKSK-----------------TLNDLYSLDFETMI 286 (694)
Q Consensus 232 ~t~~W~~l~~~g~~P~~R~--------~hs~~~~~~~~lyv~GG~~~~~-----------------~~~dv~~yd~~t~~ 286 (694)
.+++|..+. ++|.+|. ++.+++++++ |||+||.+... ....+++||+++++
T Consensus 248 ~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~ 323 (376)
T PRK14131 248 NNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNGV-LLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGK 323 (376)
T ss_pred CCcceeecC---CCCCCCcCCcCCccceEeceeECCE-EEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCc
Confidence 899999987 7777664 2335667887 99999975321 11346799999999
Q ss_pred EEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCC-CCcCeEEEEECCCCcEEE
Q 005493 287 WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-KRHAETLIFDILKGEWSV 339 (694)
Q Consensus 287 W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~-~~~~~v~~yd~~t~~W~~ 339 (694)
|+.+.. +|.+|..+++++++++|||+||.... ...+++++|++..+.|..
T Consensus 324 W~~~~~---lp~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 324 WQKVGE---LPQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred ccccCc---CCCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 998865 48899999999999999999997643 567899999999887764
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=287.72 Aligned_cols=259 Identities=16% Similarity=0.207 Sum_probs=198.3
Q ss_pred cCCCeEEEecCCCCCC-------CccccccCccccCCCCCCCCceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCCC
Q 005493 39 PNSECVAPSSNHADDR-------DCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNG 111 (694)
Q Consensus 39 ~~~~~i~~~GG~~~~~-------~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~ 111 (694)
..++.||++||..... ...+..++|.+. ....+..|..++ ++|.+|..+++++++++||++||.....
T Consensus 11 ~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~--~~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyviGG~~~~~ 85 (323)
T TIGR03548 11 IIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAK--DENSNLKWVKDG---QLPYEAAYGASVSVENGIYYIGGSNSSE 85 (323)
T ss_pred EECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEe--cCCCceeEEEcc---cCCccccceEEEEECCEEEEEcCCCCCC
Confidence 3467799999954321 112223444321 001234799887 7899999888999999999999998777
Q ss_pred CcCcEEEEECCCCcE----EEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEE
Q 005493 112 LLDDVQVLNFDRFSW----TAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSV 187 (694)
Q Consensus 112 ~~~~v~~yd~~t~~W----~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 187 (694)
.++++++||+.++.| ..+++ +| .++..|++++++++||++||... ....+++++||+.+++|+.
T Consensus 86 ~~~~v~~~d~~~~~w~~~~~~~~~----------lp-~~~~~~~~~~~~~~iYv~GG~~~-~~~~~~v~~yd~~~~~W~~ 153 (323)
T TIGR03548 86 RFSSVYRITLDESKEELICETIGN----------LP-FTFENGSACYKDGTLYVGGGNRN-GKPSNKSYLFNLETQEWFE 153 (323)
T ss_pred CceeEEEEEEcCCceeeeeeEcCC----------CC-cCccCceEEEECCEEEEEeCcCC-CccCceEEEEcCCCCCeeE
Confidence 789999999999998 45554 33 34567899999999999999753 3457899999999999999
Q ss_pred eeecCCCC-CcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccC--CCCCCCcceeEEEEECCcEEEE
Q 005493 188 VEAKGDIP-VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCT--GTGPSPRSNHVAALYDDKNLLI 264 (694)
Q Consensus 188 ~~~~g~~p-~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~--g~~P~~R~~hs~~~~~~~~lyv 264 (694)
++ +|| .+|..|+++.++++|||+||.+.. ...++++||+.+++|+.+... +..|.++..++.+++.+..|||
T Consensus 154 ~~---~~p~~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv 228 (323)
T TIGR03548 154 LP---DFPGEPRVQPVCVKLQNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLC 228 (323)
T ss_pred CC---CCCCCCCCcceEEEECCEEEEEcCCCCc--cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEE
Confidence 87 476 479999999999999999998754 356799999999999998743 2345555556655565444999
Q ss_pred EcCCCCCC--------------------------------CCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEE
Q 005493 265 FGGSSKSK--------------------------------TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKW 312 (694)
Q Consensus 265 ~GG~~~~~--------------------------------~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~i 312 (694)
+||.+... +.+++++||+.+++|+.++.+ +..+|.+++++.++++|
T Consensus 229 ~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--p~~~r~~~~~~~~~~~i 306 (323)
T TIGR03548 229 IGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNS--PFFARCGAALLLTGNNI 306 (323)
T ss_pred ECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccc--cccccCchheEEECCEE
Confidence 99986421 246899999999999999754 23589999999999999
Q ss_pred EEEcCCCCC
Q 005493 313 YIAGGGSRK 321 (694)
Q Consensus 313 yV~GG~~~~ 321 (694)
|++||....
T Consensus 307 yv~GG~~~p 315 (323)
T TIGR03548 307 FSINGELKP 315 (323)
T ss_pred EEEeccccC
Confidence 999997653
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=287.87 Aligned_cols=304 Identities=25% Similarity=0.484 Sum_probs=251.7
Q ss_pred CCCceEEeec-cCCCCCCccceEEEEECCEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccce
Q 005493 72 NSENWMVLSI-AGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGH 150 (694)
Q Consensus 72 ~t~~W~~l~~-~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~ 150 (694)
.--+|..+.. .|+.|.||.||.++++..-|+||||-+ .+..+.+.+||..++.|..-+.-+ .-+|++..|
T Consensus 15 ~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGN-EGiiDELHvYNTatnqWf~PavrG--------DiPpgcAA~ 85 (830)
T KOG4152|consen 15 NVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGN-EGIIDELHVYNTATNQWFAPAVRG--------DIPPGCAAF 85 (830)
T ss_pred cccceEEEecccCCCCCccccchheeeeeeEEEecCCc-ccchhhhhhhccccceeecchhcC--------CCCCchhhc
Confidence 3467998865 678999999999999999999999943 568899999999999998766542 235567789
Q ss_pred EEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeee----cCCCCCcceeeEEEEECCeEEEEccccCC-------
Q 005493 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA----KGDIPVARSGHTVVRASSVLILFGGEDGK------- 219 (694)
Q Consensus 151 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~----~g~~p~~R~~~~~~~~~~~lyv~GG~~~~------- 219 (694)
.++..+.+||+|||+..-+.+.+++|.+....-.|+++.+ .|..|.+|-+|+...++++.|+|||..++
T Consensus 86 GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknN 165 (830)
T KOG4152|consen 86 GFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNN 165 (830)
T ss_pred ceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccc
Confidence 9999999999999999888899999988777788887754 46789999999999999999999998432
Q ss_pred -CccccceEEeeCCCC----cEEEcccCCCCCCCcceeEEEEEC---C--cEEEEEcCCCCCCCCCeEEEEEcCCCcEEE
Q 005493 220 -RRKLNDLHMFDLKSL----TWLPLHCTGTGPSPRSNHVAALYD---D--KNLLIFGGSSKSKTLNDLYSLDFETMIWTR 289 (694)
Q Consensus 220 -~~~~~~v~~yd~~t~----~W~~l~~~g~~P~~R~~hs~~~~~---~--~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~ 289 (694)
.+++||+|++++.-+ .|......|.+|.+|..|+++++- + ..+|||||.++- .+.|+|.+|+++.+|.+
T Consensus 166 vPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~k 244 (830)
T KOG4152|consen 166 VPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTWNK 244 (830)
T ss_pred cchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecceeeccc
Confidence 358999999998744 499999999999999999999982 1 259999998764 47899999999999999
Q ss_pred eeccCCCCCCCcceEEEEECCEEEEEcCCCC------C--------CCcCeEEEEECCCCcEEEeecC---CCCCCCCCc
Q 005493 290 IKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR------K--------KRHAETLIFDILKGEWSVAITS---PSSSVTSNK 352 (694)
Q Consensus 290 l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~------~--------~~~~~v~~yd~~t~~W~~l~~~---~~~~p~~r~ 352 (694)
....|..|.||+-|+++.+++++|||||.-- . ...+.+-++++++..|..+... ....|.+|.
T Consensus 245 p~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RA 324 (830)
T KOG4152|consen 245 PSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARA 324 (830)
T ss_pred ccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccc
Confidence 9999999999999999999999999999521 0 1245677899999999877432 123689999
Q ss_pred CcEEEEEeecCCcEEEEEcCCCCCC--------CCcEEEEECccC
Q 005493 353 GFTLVLVQHKEKDFLVAFGGIKKEP--------SNQVEVLSIEKN 389 (694)
Q Consensus 353 ~~s~~~v~~~~~~~i~v~GG~~~~~--------~~~v~~~di~~~ 389 (694)
+|+++.++ ..+|+..|.++.. -.++|.+|...-
T Consensus 325 GHCAvAig----tRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekP 365 (830)
T KOG4152|consen 325 GHCAVAIG----TRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKP 365 (830)
T ss_pred cceeEEec----cEEEEEeccchhhHhhccccchhhhhhhcccCC
Confidence 99999998 6899999987753 446666665443
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.6e-31 Score=294.56 Aligned_cols=246 Identities=33% Similarity=0.544 Sum_probs=221.7
Q ss_pred CCCCCccceEEEEECCEEEEEccccCCCCCcc-EEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCC
Q 005493 142 LKIPACRGHSLISWGKKVLLVGGKTDSGSDRV-SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR 220 (694)
Q Consensus 142 ~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~-~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~ 220 (694)
..+.+|.+|+++.+++++|||||........+ ++|++|..+..|......+..|.+|++|+++.++++||+|||.+...
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~ 135 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY 135 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence 34667899999999999999999976544333 69999999999999999999999999999999999999999998655
Q ss_pred ccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCC-CCCeEEEEEcCCCcEEEeeccCCCCCC
Q 005493 221 RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWTRIKIRGFHPSP 299 (694)
Q Consensus 221 ~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~-~~~dv~~yd~~t~~W~~l~~~~~~p~~ 299 (694)
..+++++.||+.|++|..+.+.+.+|.+|.+|++++++++ +|||||..... ..|++|+||+++.+|.++...+..|.|
T Consensus 136 ~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~-l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p 214 (482)
T KOG0379|consen 136 RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTK-LVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP 214 (482)
T ss_pred CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCE-EEEECCccCcccceeeeeeeccccccceecccCCCCCCC
Confidence 5689999999999999999999999999999999999977 99999998766 899999999999999999999999999
Q ss_pred CcceEEEEECCEEEEEcCCC-CCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCC--
Q 005493 300 RAGCCGVLCGTKWYIAGGGS-RKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE-- 376 (694)
Q Consensus 300 R~~~sav~~~~~iyV~GG~~-~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~-- 376 (694)
|.+|+++++++++||+||.. +...++|+|.||+.+..|..+. .....|.+|.+|+++... .+++++||....
T Consensus 215 R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~-~~g~~p~~R~~h~~~~~~----~~~~l~gG~~~~~~ 289 (482)
T KOG0379|consen 215 RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP-TGGDLPSPRSGHSLTVSG----DHLLLFGGGTDPKQ 289 (482)
T ss_pred CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeecc-ccCCCCCCcceeeeEEEC----CEEEEEcCCccccc
Confidence 99999999999999999998 6778899999999999999554 456789999999999554 689999999763
Q ss_pred -CCCcEEEEECccCCcCC
Q 005493 377 -PSNQVEVLSIEKNESSM 393 (694)
Q Consensus 377 -~~~~v~~~di~~~~w~~ 393 (694)
...++|.|++.+..|..
T Consensus 290 ~~l~~~~~l~~~~~~w~~ 307 (482)
T KOG0379|consen 290 EPLGDLYGLDLETLVWSK 307 (482)
T ss_pred ccccccccccccccceee
Confidence 68999999999888765
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=272.66 Aligned_cols=248 Identities=30% Similarity=0.522 Sum_probs=211.5
Q ss_pred CCCCCCccceEEEEE--CCEEEEEcCCCCCC----CcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEEC
Q 005493 83 GDKPIPRFNHAAAVI--GNKMIVVGGESGNG----LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG 156 (694)
Q Consensus 83 ~~~P~~R~~hs~~~~--~~~lyv~GG~~~~~----~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~ 156 (694)
-++|.||.++++++. .+.|++|||...++ .++++|.||..++.|+.+... -+||+|..|.+|++-
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp---------n~P~pRsshq~va~~ 131 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP---------NAPPPRSSHQAVAVP 131 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC---------CCcCCCccceeEEec
Confidence 367899999998876 45799999964332 589999999999999998762 456678889888885
Q ss_pred -CEEEEEccccCCCC-----CccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCC---CccccceE
Q 005493 157 -KKVLLVGGKTDSGS-----DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK---RRKLNDLH 227 (694)
Q Consensus 157 -~~Iyv~GG~~~~~~-----~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~---~~~~~~v~ 227 (694)
|.+|||||.-.... ...++|.||+.+++|..+...| -|.+|++|-+++...+|+||||+... ..+.||+|
T Consensus 132 s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy 210 (521)
T KOG1230|consen 132 SNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVY 210 (521)
T ss_pred cCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeE
Confidence 89999999754221 2568999999999999998766 79999999999999999999998543 35889999
Q ss_pred EeeCCCCcEEEcccCCCCCCCcceeEEEEE-CCcEEEEEcCCCC---------CCCCCeEEEEEcCC-----CcEEEeec
Q 005493 228 MFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSK---------SKTLNDLYSLDFET-----MIWTRIKI 292 (694)
Q Consensus 228 ~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~~lyv~GG~~~---------~~~~~dv~~yd~~t-----~~W~~l~~ 292 (694)
+||+++.+|+++.+.|..|.||.+|++.+. ++. |||+||++. ....+|+|.+++++ -.|+.+.+
T Consensus 211 ~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~-i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp 289 (521)
T KOG1230|consen 211 AFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGG-IVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP 289 (521)
T ss_pred EEeccceeeeeccCCCCCCCCCCcceEEecCCCc-EEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence 999999999999999999999999999999 566 999999963 24678999999988 78999999
Q ss_pred cCCCCCCCcceEEEEE-CCEEEEEcCCCC---------CCCcCeEEEEECCCCcEEEee
Q 005493 293 RGFHPSPRAGCCGVLC-GTKWYIAGGGSR---------KKRHAETLIFDILKGEWSVAI 341 (694)
Q Consensus 293 ~~~~p~~R~~~sav~~-~~~iyV~GG~~~---------~~~~~~v~~yd~~t~~W~~l~ 341 (694)
.+..|.||+++++++. +++-|.|||... +...+++|.||+..++|....
T Consensus 290 ~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~q 348 (521)
T KOG1230|consen 290 SGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQ 348 (521)
T ss_pred CCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhh
Confidence 9999999999998887 569999999754 245789999999999998764
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=291.22 Aligned_cols=211 Identities=16% Similarity=0.234 Sum_probs=186.1
Q ss_pred EEEECCEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCcc
Q 005493 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRV 173 (694)
Q Consensus 94 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~ 173 (694)
++.+++.||++||.......+.+++|||.+++|..++++ + .+|..+++++++++||++||... .+
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m----------~-~~r~~~~~v~~~~~iYviGG~~~----~~ 331 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPM----------N-SPRLYASGVPANNKLYVVGGLPN----PT 331 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCC----------C-chhhcceEEEECCEEEEECCcCC----CC
Confidence 345899999999987766788999999999999999983 3 35566888999999999999752 25
Q ss_pred EEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeE
Q 005493 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (694)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs 253 (694)
++++||+.+++|..++ +||.+|.+|++++++++||++||.+.. .+.+++||+.+++|+.++ ++|.+|.+|+
T Consensus 332 sve~ydp~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~---~m~~~r~~~~ 402 (480)
T PHA02790 332 SVERWFHGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGP---STYYPHYKSC 402 (480)
T ss_pred ceEEEECCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCC---CCCCccccce
Confidence 7999999999999988 599999999999999999999998643 367999999999999987 8999999999
Q ss_pred EEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECC
Q 005493 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (694)
Q Consensus 254 ~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~ 333 (694)
+++++++ |||+||. +.+||+++++|+.++++ |.+|..+++++++++|||+||.+.....+.+++||+.
T Consensus 403 ~~~~~~~-IYv~GG~--------~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 403 ALVFGRR-LFLVGRN--------AEFYCESSNTWTLIDDP---IYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred EEEECCE-EEEECCc--------eEEecCCCCcEeEcCCC---CCCccccEEEEECCEEEEECCcCCCcccceEEEEECC
Confidence 9999998 9999984 67899999999999765 8899999999999999999998765556789999999
Q ss_pred CCcEEEe
Q 005493 334 KGEWSVA 340 (694)
Q Consensus 334 t~~W~~l 340 (694)
+++|+..
T Consensus 471 ~~~W~~~ 477 (480)
T PHA02790 471 TYSWNIW 477 (480)
T ss_pred CCeEEec
Confidence 9999864
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=265.04 Aligned_cols=247 Identities=23% Similarity=0.433 Sum_probs=201.2
Q ss_pred CCCCccccC-----CCeEEEecC-CCCCCCccccccCccccCCCCCCCCceEEeeccCCCCCCccceEEEEEC-CEEEEE
Q 005493 32 PPKRNSNPN-----SECVAPSSN-HADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIG-NKMIVV 104 (694)
Q Consensus 32 ~~~r~~~~~-----~~~i~~~GG-~~~~~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P~~R~~hs~~~~~-~~lyv~ 104 (694)
|+||+.... -+-+++||| ..++......++.|..++ .++.|..+.. ++.|.||++|++|++. |.+|||
T Consensus 64 PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~----k~~eWkk~~s-pn~P~pRsshq~va~~s~~l~~f 138 (521)
T KOG1230|consen 64 PSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNT----KKNEWKKVVS-PNAPPPRSSHQAVAVPSNILWLF 138 (521)
T ss_pred CCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEec----cccceeEecc-CCCcCCCccceeEEeccCeEEEe
Confidence 477733322 244999999 333333333333333333 8999999964 4778899999999986 889999
Q ss_pred cCCCCC--C----CcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCC---CCccEE
Q 005493 105 GGESGN--G----LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG---SDRVSV 175 (694)
Q Consensus 105 GG~~~~--~----~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~---~~~~~v 175 (694)
||...+ + .+.++|+||..+++|.++... ..|.+|.+|-++++.++|++|||..+.. .+.|+|
T Consensus 139 GGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~---------g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDv 209 (521)
T KOG1230|consen 139 GGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG---------GGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDV 209 (521)
T ss_pred ccccCCcchhhhhhhhheeeeeeccchheeeccC---------CCCCCCccceeEEeeeeEEEEcceecCCCceEEeeee
Confidence 996422 1 578999999999999999875 3456889999999999999999987643 357899
Q ss_pred EEEECCCCcEEEeeecCCCCCcceeeEEEEE-CCeEEEEccccC--------CCccccceEEeeCCC-----CcEEEccc
Q 005493 176 WTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDG--------KRRKLNDLHMFDLKS-----LTWLPLHC 241 (694)
Q Consensus 176 ~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~-~~~lyv~GG~~~--------~~~~~~~v~~yd~~t-----~~W~~l~~ 241 (694)
|+||+.+-+|+.+.++|..|.+|+++++.+. .+.|||+||+.. .+...+|+|.+++.. ..|+++.+
T Consensus 210 y~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp 289 (521)
T KOG1230|consen 210 YAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP 289 (521)
T ss_pred EEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence 9999999999999998889999999999998 899999999852 245789999999998 78999999
Q ss_pred CCCCCCCcceeEEEEECCcEEEEEcCCCC---------CCCCCeEEEEEcCCCcEEEeec
Q 005493 242 TGTGPSPRSNHVAALYDDKNLLIFGGSSK---------SKTLNDLYSLDFETMIWTRIKI 292 (694)
Q Consensus 242 ~g~~P~~R~~hs~~~~~~~~lyv~GG~~~---------~~~~~dv~~yd~~t~~W~~l~~ 292 (694)
.|.-|.||.++++++..+...|.|||... ..++||+|.||++.++|.....
T Consensus 290 ~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 290 SGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred CCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence 99999999999999998866999999743 3578999999999999997654
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=280.75 Aligned_cols=209 Identities=16% Similarity=0.273 Sum_probs=181.9
Q ss_pred EEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeC
Q 005493 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 231 (694)
Q Consensus 152 ~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~ 231 (694)
.+..++.||++||... ....+++++||+.+++|..++ +||.+|..++++.++++||++||.+.. +++++||+
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp 338 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFH 338 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCCC----CceEEEEC
Confidence 3458999999999854 345678999999999999998 599999999999999999999998532 56999999
Q ss_pred CCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCE
Q 005493 232 KSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK 311 (694)
Q Consensus 232 ~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~ 311 (694)
.+++|..++ +||.+|.+|++++++++ ||++||.... .+.+++||+.+++|+.++++ |.+|.++++++++++
T Consensus 339 ~~n~W~~~~---~l~~~r~~~~~~~~~g~-IYviGG~~~~--~~~ve~ydp~~~~W~~~~~m---~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 339 GDAAWVNMP---SLLKPRCNPAVASINNV-IYVIGGHSET--DTTTEYLLPNHDQWQFGPST---YYPHYKSCALVFGRR 409 (480)
T ss_pred CCCeEEECC---CCCCCCcccEEEEECCE-EEEecCcCCC--CccEEEEeCCCCEEEeCCCC---CCccccceEEEECCE
Confidence 999999997 89999999999999999 9999998543 36799999999999998665 889999999999999
Q ss_pred EEEEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCC-CCcEEEEECccCC
Q 005493 312 WYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNE 390 (694)
Q Consensus 312 iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~-~~~v~~~di~~~~ 390 (694)
|||+||. +.+||+.+++|+.++ +++.+|.+++++++. +.||++||+++.. .+.+++||+.+++
T Consensus 410 IYv~GG~--------~e~ydp~~~~W~~~~----~m~~~r~~~~~~v~~----~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 410 LFLVGRN--------AEFYCESSNTWTLID----DPIYPRDNPELIIVD----NKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EEEECCc--------eEEecCCCCcEeEcC----CCCCCccccEEEEEC----CEEEEECCcCCCcccceEEEEECCCCe
Confidence 9999983 578999999999986 235678899998886 7899999986443 6789999999999
Q ss_pred cCC
Q 005493 391 SSM 393 (694)
Q Consensus 391 w~~ 393 (694)
|+.
T Consensus 474 W~~ 476 (480)
T PHA02790 474 WNI 476 (480)
T ss_pred EEe
Confidence 865
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-29 Score=262.01 Aligned_cols=283 Identities=25% Similarity=0.399 Sum_probs=232.8
Q ss_pred ccccCCCeEEEecCCCCCCCccccccCccccCCCCCCCCceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCC-CCcC
Q 005493 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGN-GLLD 114 (694)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~-~~~~ 114 (694)
..+...+-|++|||-+.++ .+...+|+- .+++|..-++-|+.|.+-..|+++-.|.+||+|||+..- .+.|
T Consensus 37 RAVaikELiviFGGGNEGi--iDELHvYNT------atnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsN 108 (830)
T KOG4152|consen 37 RAVAIKELIVIFGGGNEGI--IDELHVYNT------ATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSN 108 (830)
T ss_pred hheeeeeeEEEecCCcccc--hhhhhhhcc------ccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccc
Confidence 4555567899999966655 234456777 899999999999999999999999999999999998654 4678
Q ss_pred cEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCC--------CCccEEEEEECCCC---
Q 005493 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG--------SDRVSVWTFDTETE--- 183 (694)
Q Consensus 115 ~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~--------~~~~~v~~yd~~t~--- 183 (694)
++|-+-...-.|+++.+.. +...+++.+|.+|+...++++.|+|||..... .+++++|++++.-+
T Consensus 109 dLYELQasRWeWkrlkp~~----p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgv 184 (830)
T KOG4152|consen 109 DLYELQASRWEWKRLKPKT----PKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGV 184 (830)
T ss_pred hHHHhhhhhhhHhhcCCCC----CCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCce
Confidence 8877777777899887742 22235566889999999999999999986422 24778999998744
Q ss_pred -cEEEeeecCCCCCcceeeEEEEE------CCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEE
Q 005493 184 -CWSVVEAKGDIPVARSGHTVVRA------SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 256 (694)
Q Consensus 184 -~W~~~~~~g~~p~~R~~~~~~~~------~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~ 256 (694)
.|...-..|.+|.+|..|+++++ ..++|||||..+- .+.|+|.+|+++..|.+....|-.|.||.-|+++.
T Consensus 185 v~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~--RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~ 262 (830)
T KOG4152|consen 185 VAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC--RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATT 262 (830)
T ss_pred EEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc--cccceeEEecceeecccccccCCCCCCccccccee
Confidence 49988888999999999999987 2489999999875 68999999999999999999999999999999999
Q ss_pred ECCcEEEEEcCCCC--------------CCCCCeEEEEEcCCCcEEEeecc----CCCCCCCcceEEEEECCEEEEEcCC
Q 005493 257 YDDKNLLIFGGSSK--------------SKTLNDLYSLDFETMIWTRIKIR----GFHPSPRAGCCGVLCGTKWYIAGGG 318 (694)
Q Consensus 257 ~~~~~lyv~GG~~~--------------~~~~~dv~~yd~~t~~W~~l~~~----~~~p~~R~~~sav~~~~~iyV~GG~ 318 (694)
++++ +|||||+-. -.|.+.+-++++.+..|..+-.. ...|.+|.+||+++++.++||..|.
T Consensus 263 IGnK-MyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGR 341 (830)
T KOG4152|consen 263 IGNK-MYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGR 341 (830)
T ss_pred ecce-eEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEecc
Confidence 9999 999999721 14678889999999999987541 2268999999999999999999998
Q ss_pred CCC-------CCcCeEEEEECC
Q 005493 319 SRK-------KRHAETLIFDIL 333 (694)
Q Consensus 319 ~~~-------~~~~~v~~yd~~ 333 (694)
++. ..+.|+|.+|..
T Consensus 342 DGYrKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 342 DGYRKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred chhhHhhccccchhhhhhhccc
Confidence 753 345788888764
|
|
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=207.77 Aligned_cols=237 Identities=14% Similarity=0.181 Sum_probs=196.5
Q ss_pred CCCcceeeEEEEEC------CeEEEEccccCCCccccceEEeeCCCCc--------EEEcccCCCCCCCcceeEEEEECC
Q 005493 194 IPVARSGHTVVRAS------SVLILFGGEDGKRRKLNDLHMFDLKSLT--------WLPLHCTGTGPSPRSNHVAALYDD 259 (694)
Q Consensus 194 ~p~~R~~~~~~~~~------~~lyv~GG~~~~~~~~~~v~~yd~~t~~--------W~~l~~~g~~P~~R~~hs~~~~~~ 259 (694)
+|+.|+.+.+...+ ...+|+||++++++.++++|+....+.. ++.....|++|.+||+|++.++..
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~S 98 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHS 98 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEE
Confidence 78888775555422 2788999999999999999999887654 344455799999999999988854
Q ss_pred c---EEEEEcCCCCC--------------CCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCC
Q 005493 260 K---NLLIFGGSSKS--------------KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK 322 (694)
Q Consensus 260 ~---~lyv~GG~~~~--------------~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~ 322 (694)
+ .+++|||++.. .+...||.+|++.++++.... +++..+.++|.+.+.+|.+||+||++-..
T Consensus 99 rGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar~D~VYilGGHsl~s 177 (337)
T PF03089_consen 99 RGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLARNDCVYILGGHSLES 177 (337)
T ss_pred CCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEecCceEEEEccEEccC
Confidence 3 78999998643 367889999999999998876 67788999999999999999999998877
Q ss_pred CcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC--------cCCC
Q 005493 323 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE--------SSMG 394 (694)
Q Consensus 323 ~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~--------w~~~ 394 (694)
......+|.++.+.-...+...+.....+...+++++...+.+.++|+|||..+.+++|.|..+..++ .++.
T Consensus 178 d~Rpp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd~~I~ie~~E~P~ 257 (337)
T PF03089_consen 178 DSRPPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDDDGIHIEEREPPE 257 (337)
T ss_pred CCCCCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccceeeeeeeEEEEeCCceEeccCCCCC
Confidence 77777777776665555555566677888899999999888899999999999999999998887665 4778
Q ss_pred ccccCCCCCCCcceecccCCCCccccccCCCCCCCCCChHHHHHHHHHH
Q 005493 395 RRSTPNAKGPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAI 443 (694)
Q Consensus 395 w~~~~~~~~~~~~~fggs~~~~~l~~~~~~~~~~~~~~s~~~~~l~~~~ 443 (694)
|+ .++.++.+||||+++ +|+.++++|++.++..+|+-
T Consensus 258 Wt---~dI~hSrtWFGgs~G---------~G~~Li~iP~e~~~~~~da~ 294 (337)
T PF03089_consen 258 WT---GDIKHSRTWFGGSMG---------KGSALIGIPSEGRQAPSDAY 294 (337)
T ss_pred CC---CCcCcCccccccccC---------CceEEEEECCCCCCCCCCce
Confidence 98 779999999999999 99999999999998886663
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-15 Score=156.71 Aligned_cols=264 Identities=21% Similarity=0.308 Sum_probs=188.0
Q ss_pred ccccCCCeEEEecCCCCCCCccccccCccccCCCCCCCCceEEeeccCCCC-CCccceEEEEECCEEEEEcCCCCC----
Q 005493 36 NSNPNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKP-IPRFNHAAAVIGNKMIVVGGESGN---- 110 (694)
Q Consensus 36 ~~~~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P-~~R~~hs~~~~~~~lyv~GG~~~~---- 110 (694)
+....++.+|+.=|..-.-.+. .|+. .....|+.++ ..| .+|.+..+++++++||+|||....
T Consensus 41 ~Ga~ig~~~YVGLGs~G~afy~-----ldL~----~~~k~W~~~a---~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~ 108 (381)
T COG3055 41 AGALIGDTVYVGLGSAGTAFYV-----LDLK----KPGKGWTKIA---DFPGGARNQAVAAVIGGKLYVFGGYGKSVSSS 108 (381)
T ss_pred ccceecceEEEEeccCCcccee-----hhhh----cCCCCceEcc---cCCCcccccchheeeCCeEEEeeccccCCCCC
Confidence 5555567888877733222121 2221 1568999998 555 679999999999999999997432
Q ss_pred -CCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECC-EEEEEccccCCC-------------------
Q 005493 111 -GLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGK-KVLLVGGKTDSG------------------- 169 (694)
Q Consensus 111 -~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~-~Iyv~GG~~~~~------------------- 169 (694)
...+++++|||.+++|..+... .|....+++++.+++ +||++||.+..-
T Consensus 109 ~~~~nd~Y~y~p~~nsW~kl~t~----------sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~ 178 (381)
T COG3055 109 PQVFNDAYRYDPSTNSWHKLDTR----------SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVD 178 (381)
T ss_pred ceEeeeeEEecCCCChhheeccc----------cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHH
Confidence 3578999999999999999873 233456889999987 999999985210
Q ss_pred --------------CCccEEEEEECCCCcEEEeeecCCCC-CcceeeEEEEECCeEEEEccccCCCccccceEEeeCC--
Q 005493 170 --------------SDRVSVWTFDTETECWSVVEAKGDIP-VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLK-- 232 (694)
Q Consensus 170 --------------~~~~~v~~yd~~t~~W~~~~~~g~~p-~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~-- 232 (694)
.....|+.|++.++.|+.+-. .| .++++++++.-++++.++-|.-..+-.+..+++++..
T Consensus 179 ~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~---~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~ 255 (381)
T COG3055 179 KIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE---NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGD 255 (381)
T ss_pred HHHHHHhCCCHHHhcccccccccccccchhhhcCc---CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccC
Confidence 012259999999999998752 44 4667766666678899999987766666777777775
Q ss_pred CCcEEEcccCCCCCCCcc-------eeEEEEECCcEEEEEcCCCC-------------------CCCCCeEEEEEcCCCc
Q 005493 233 SLTWLPLHCTGTGPSPRS-------NHVAALYDDKNLLIFGGSSK-------------------SKTLNDLYSLDFETMI 286 (694)
Q Consensus 233 t~~W~~l~~~g~~P~~R~-------~hs~~~~~~~~lyv~GG~~~-------------------~~~~~dv~~yd~~t~~ 286 (694)
.-+|..+. ++|.+.. ++-.-..++. +++.||..- ....++||.|| .+.
T Consensus 256 ~~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~-~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~ 329 (381)
T COG3055 256 NLKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGE-VLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGS 329 (381)
T ss_pred ceeeeecc---CCCCCCCCCccccceeccceeCCe-EEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCc
Confidence 45799986 4444333 3323334455 788888631 13567899999 999
Q ss_pred EEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCC-CCcCeEEEEECC
Q 005493 287 WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-KRHAETLIFDIL 333 (694)
Q Consensus 287 W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~-~~~~~v~~yd~~ 333 (694)
|+.+ +.+|.++++-.++..++.||++||.+.. .....++.+...
T Consensus 330 Wk~~---GeLp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l~~~ 374 (381)
T COG3055 330 WKIV---GELPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSLSWD 374 (381)
T ss_pred eeee---cccCCCccceEEEecCCcEEEEccccCCCeeeeeEEEEEEc
Confidence 9998 5568899988889999999999997654 444555554433
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.5e-15 Score=150.73 Aligned_cols=275 Identities=21% Similarity=0.344 Sum_probs=190.5
Q ss_pred CCCCCccceEEEEECCEEEEEcCCCCCCCcCcEEEEECCC--CcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEE
Q 005493 84 DKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDR--FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLL 161 (694)
Q Consensus 84 ~~P~~R~~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv 161 (694)
+.|.+--..+.+.+++.+||-=|..+ ...+.+|+.. ..|+.++. .|..+|.+..+++.+++||+
T Consensus 32 dlPvg~KnG~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~----------FpG~~rnqa~~a~~~~kLyv 97 (381)
T COG3055 32 DLPVGFKNGAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIAD----------FPGGARNQAVAAVIGGKLYV 97 (381)
T ss_pred CCCccccccccceecceEEEEeccCC----ccceehhhhcCCCCceEccc----------CCCcccccchheeeCCeEEE
Confidence 77888777788889999999655322 3567777765 58999998 67788899999999999999
Q ss_pred EccccCCCC----CccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECC-eEEEEccccCC-----------------
Q 005493 162 VGGKTDSGS----DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGK----------------- 219 (694)
Q Consensus 162 ~GG~~~~~~----~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~-~lyv~GG~~~~----------------- 219 (694)
|||...... ..+++|+||+.+++|..+.+ ..|....+++++.+++ +||++||.+..
T Consensus 98 FgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~ 175 (381)
T COG3055 98 FGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKE 175 (381)
T ss_pred eeccccCCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHH
Confidence 999865333 36789999999999999986 4577788888888887 99999997421
Q ss_pred ----------------CccccceEEeeCCCCcEEEcccCCCCC-CCcceeEEEEECCcEEEEEcCCCC-CCCCCeEEEEE
Q 005493 220 ----------------RRKLNDLHMFDLKSLTWLPLHCTGTGP-SPRSNHVAALYDDKNLLIFGGSSK-SKTLNDLYSLD 281 (694)
Q Consensus 220 ----------------~~~~~~v~~yd~~t~~W~~l~~~g~~P-~~R~~hs~~~~~~~~lyv~GG~~~-~~~~~dv~~yd 281 (694)
......+..|+|.+++|+.+. ..| .++++. ++++.+..+.++-|.-. .-....+++++
T Consensus 176 ~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G---~~pf~~~aGs-a~~~~~n~~~lInGEiKpGLRt~~~k~~~ 251 (381)
T COG3055 176 AVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLG---ENPFYGNAGS-AVVIKGNKLTLINGEIKPGLRTAEVKQAD 251 (381)
T ss_pred HHHHHHHHHhCCCHHHhcccccccccccccchhhhcC---cCcccCccCc-ceeecCCeEEEEcceecCCccccceeEEE
Confidence 013456889999999999874 444 455564 44555443666666533 33345566776
Q ss_pred cC--CCcEEEeeccCCCC----CCCcceEEEEECCEEEEEcCCCC-------------------CCCcCeEEEEECCCCc
Q 005493 282 FE--TMIWTRIKIRGFHP----SPRAGCCGVLCGTKWYIAGGGSR-------------------KKRHAETLIFDILKGE 336 (694)
Q Consensus 282 ~~--t~~W~~l~~~~~~p----~~R~~~sav~~~~~iyV~GG~~~-------------------~~~~~~v~~yd~~t~~ 336 (694)
+. .-+|..+...+.++ .+..++-+-..++.+.|.||..- ....++||.|| .+.
T Consensus 252 ~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~ 329 (381)
T COG3055 252 FGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGS 329 (381)
T ss_pred eccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCc
Confidence 64 56899997653221 12222223334788999998642 13457889988 889
Q ss_pred EEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCC--CCCcEEEEECcc
Q 005493 337 WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE--PSNQVEVLSIEK 388 (694)
Q Consensus 337 W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~--~~~~v~~~di~~ 388 (694)
|+.+..+|. + .++++.+.. .+.+|++||.... ...+|+.+....
T Consensus 330 Wk~~GeLp~----~-l~YG~s~~~---nn~vl~IGGE~~~Gka~~~v~~l~~~g 375 (381)
T COG3055 330 WKIVGELPQ----G-LAYGVSLSY---NNKVLLIGGETSGGKATTRVYSLSWDG 375 (381)
T ss_pred eeeecccCC----C-ccceEEEec---CCcEEEEccccCCCeeeeeEEEEEEcC
Confidence 999864433 2 233333332 3679999998644 366666655443
|
|
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-15 Score=159.56 Aligned_cols=269 Identities=22% Similarity=0.329 Sum_probs=189.2
Q ss_pred CCCcEEEcccccccCCCCCCCCCCCccceEEEEECC--EEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcce
Q 005493 122 DRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGK--KVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARS 199 (694)
Q Consensus 122 ~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~--~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~ 199 (694)
-+-.|.++++.... -.+....+..|.||.+|...+ .||++||+++ ...+.++|.|+...+.|..+...+..|-.|.
T Consensus 237 y~~~W~~i~~~~~~-~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG-~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs 314 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTK-GDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDG-TQDLADFWAYSVKENQWTCINRDTEGPGARS 314 (723)
T ss_pred ccccccccCchhhc-ccccccCccccCcceEEEeCCCcEEEEecCccc-chhHHHHHhhcCCcceeEEeecCCCCCcchh
Confidence 34679988764211 111112355778999999865 9999999965 4567899999999999999987777899999
Q ss_pred eeEEEEECC--eEEEEccccCCC-----ccccceEEeeCCCCcEEEcccC---CCCCCCcceeEEEEECCc-EEEEEcCC
Q 005493 200 GHTVVRASS--VLILFGGEDGKR-----RKLNDLHMFDLKSLTWLPLHCT---GTGPSPRSNHVAALYDDK-NLLIFGGS 268 (694)
Q Consensus 200 ~~~~~~~~~--~lyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~l~~~---g~~P~~R~~hs~~~~~~~-~lyv~GG~ 268 (694)
+|-++..-. ++|+.|-+-+.. ..-+|+|+||..++.|..+... .-.|...+.|.|++..++ ++|||||+
T Consensus 315 CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 315 CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred hhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCe
Confidence 999998755 999999874321 2357899999999999988542 135889999999999876 79999998
Q ss_pred CC---CCCCCeEEEEEcCCCcEEEeeccCC-------CCCCCcceEEEEE--CCEEEEEcCCCCCCCcCeEEEEECCCCc
Q 005493 269 SK---SKTLNDLYSLDFETMIWTRIKIRGF-------HPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGE 336 (694)
Q Consensus 269 ~~---~~~~~dv~~yd~~t~~W~~l~~~~~-------~p~~R~~~sav~~--~~~iyV~GG~~~~~~~~~v~~yd~~t~~ 336 (694)
.- ...+.-+|.||.....|..+...-. --..|.+|++-++ +.++|++||.......+=.+.||+....
T Consensus 395 ~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~ 474 (723)
T KOG2437|consen 395 ILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEH 474 (723)
T ss_pred eccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceecccc
Confidence 42 2456779999999999987654211 1235778877655 6789999998876655555677765543
Q ss_pred EEEeecC--CCCCCCCCcCcEEEEEeecCCcEEEEEcCCCC-------CCCCcEEEEECccCCcC
Q 005493 337 WSVAITS--PSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKK-------EPSNQVEVLSIEKNESS 392 (694)
Q Consensus 337 W~~l~~~--~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~-------~~~~~v~~~di~~~~w~ 392 (694)
=..+... ...+..+-.++..-.+.++..+.|.+.-|... ...+.+|+|++.++.|.
T Consensus 475 ~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~ 539 (723)
T KOG2437|consen 475 VDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWS 539 (723)
T ss_pred chhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchh
Confidence 2222110 11112223344444444455567777777632 23678999999999974
|
|
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.1e-15 Score=155.60 Aligned_cols=263 Identities=21% Similarity=0.297 Sum_probs=185.6
Q ss_pred CCCCceEEeeccC-------CCCCCccceEEEEECC--EEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCC
Q 005493 71 GNSENWMVLSIAG-------DKPIPRFNHAAAVIGN--KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLP 141 (694)
Q Consensus 71 ~~t~~W~~l~~~~-------~~P~~R~~hs~~~~~~--~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~ 141 (694)
+-+..|.+++... .-|..|.||.++...+ .||++||+++-+.+.++|.|+...+.|..+..-+
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t-------- 307 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT-------- 307 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCC--------
Confidence 4677898887654 5688899999998754 8999999999999999999999999999987632
Q ss_pred CCCCCccceEEEEECC--EEEEEccccCCC-----CCccEEEEEECCCCcEEEeeec---CCCCCcceeeEEEEECCe--
Q 005493 142 LKIPACRGHSLISWGK--KVLLVGGKTDSG-----SDRVSVWTFDTETECWSVVEAK---GDIPVARSGHTVVRASSV-- 209 (694)
Q Consensus 142 ~~~p~r~~~s~v~~~~--~Iyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~---g~~p~~R~~~~~~~~~~~-- 209 (694)
-.|..|..|-+|.... ++|+.|-+-+.. ....++|+||..++.|.-+.-. ..-|...+.|.+++.+.+
T Consensus 308 ~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~ 387 (723)
T KOG2437|consen 308 EGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHM 387 (723)
T ss_pred CCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcce
Confidence 1244677888888754 999999876422 2356899999999999987632 125888999999999876
Q ss_pred EEEEccccCC--CccccceEEeeCCCCcEEEcccC----C---CCCCCcceeEEEEECC-cEEEEEcCCCCCCCCCeEEE
Q 005493 210 LILFGGEDGK--RRKLNDLHMFDLKSLTWLPLHCT----G---TGPSPRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYS 279 (694)
Q Consensus 210 lyv~GG~~~~--~~~~~~v~~yd~~t~~W~~l~~~----g---~~P~~R~~hs~~~~~~-~~lyv~GG~~~~~~~~dv~~ 279 (694)
+|||||+.-. ......+|+||.....|..+... + .-...|.+|+|-.+.+ ..+|+|||.....-++-.+.
T Consensus 388 iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~ 467 (723)
T KOG2437|consen 388 IYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFS 467 (723)
T ss_pred EEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhc
Confidence 9999998532 23567899999999999866421 1 1234688888876654 36999999987766666677
Q ss_pred EEcCCCcEEEeec---c-CCCCCCCcceEEEEE---CCEEEEEcCCCCC------CCcCeEEEEECCCCcEEEee
Q 005493 280 LDFETMIWTRIKI---R-GFHPSPRAGCCGVLC---GTKWYIAGGGSRK------KRHAETLIFDILKGEWSVAI 341 (694)
Q Consensus 280 yd~~t~~W~~l~~---~-~~~p~~R~~~sav~~---~~~iyV~GG~~~~------~~~~~v~~yd~~t~~W~~l~ 341 (694)
||+....-..+.. . ...-+.+.+..-+.. ...|.+.-|++.. ...+.+|+|++.++.|..+.
T Consensus 468 y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~ 542 (723)
T KOG2437|consen 468 YDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIY 542 (723)
T ss_pred ceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHh
Confidence 7654332222111 0 000111211111222 4567777776532 23567899999999997764
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-09 Score=82.48 Aligned_cols=50 Identities=34% Similarity=0.619 Sum_probs=46.1
Q ss_pred cceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCc
Q 005493 197 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPR 249 (694)
Q Consensus 197 ~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R 249 (694)
+|.+|++++++++|||+||.......++++++||+.+++|+.++ +||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 68999999999999999999885568999999999999999997 899887
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.2e-09 Score=80.50 Aligned_cols=50 Identities=32% Similarity=0.564 Sum_probs=44.9
Q ss_pred CccceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcc
Q 005493 146 ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVAR 198 (694)
Q Consensus 146 ~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R 198 (694)
+|.+|++++++++|||+||........+++++||+.+++|+.++ +||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 36789999999999999999876667899999999999999998 699887
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-08 Score=108.04 Aligned_cols=90 Identities=18% Similarity=0.315 Sum_probs=78.6
Q ss_pred CCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCC
Q 005493 194 IPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKT 273 (694)
Q Consensus 194 ~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~ 273 (694)
-+.++.+++++.+++++|||||.+..+..++.+|+||..+.+|......|..|.||.+|+++++++.+|+|+++.+...
T Consensus 21 ~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~- 99 (398)
T PLN02772 21 GVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD- 99 (398)
T ss_pred cCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc-
Confidence 3568899999999999999999887655789999999999999999999999999999999999887799998765542
Q ss_pred CCeEEEEEcCCC
Q 005493 274 LNDLYSLDFETM 285 (694)
Q Consensus 274 ~~dv~~yd~~t~ 285 (694)
.++|.+.+.|.
T Consensus 100 -~~~w~l~~~t~ 110 (398)
T PLN02772 100 -DSIWFLEVDTP 110 (398)
T ss_pred -cceEEEEcCCH
Confidence 67888887663
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-08 Score=76.58 Aligned_cols=48 Identities=42% Similarity=0.762 Sum_probs=42.8
Q ss_pred CCeEEEEcccc-CCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEE
Q 005493 207 SSVLILFGGED-GKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (694)
Q Consensus 207 ~~~lyv~GG~~-~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~ 257 (694)
+++||||||.+ .....++++|+||+.+++|+++ +++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 57899999998 4557899999999999999999 489999999999864
|
|
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.8e-06 Score=85.75 Aligned_cols=159 Identities=21% Similarity=0.280 Sum_probs=104.6
Q ss_pred EEEEEccccCCCCCccEEEEEECCCCc--------EEEeeecCCCCCcceeeEEEEEC----CeEEEEccccCC--C---
Q 005493 158 KVLLVGGKTDSGSDRVSVWTFDTETEC--------WSVVEAKGDIPVARSGHTVVRAS----SVLILFGGEDGK--R--- 220 (694)
Q Consensus 158 ~Iyv~GG~~~~~~~~~~v~~yd~~t~~--------W~~~~~~g~~p~~R~~~~~~~~~----~~lyv~GG~~~~--~--- 220 (694)
.-++.||.+.+....+.+|+....+.. ..+....|++|.+|++|++.++. ..+++|||+.-- +
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 456679988777777788888765432 34445568999999999987762 478999998421 0
Q ss_pred --------ccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCC--CCCCCCeEEEEEcCC---CcE
Q 005493 221 --------RKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSS--KSKTLNDLYSLDFET---MIW 287 (694)
Q Consensus 221 --------~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~--~~~~~~dv~~yd~~t---~~W 287 (694)
.....|+.+|++-+.++... .+.+..+...|.+..-++. +|++||.. .+.....++++.++- .-+
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~D~-VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~ 197 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARNDC-VYILGGHSLESDSRPPRLYRLKVDLLLGSPA 197 (337)
T ss_pred hhhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecCce-EEEEccEEccCCCCCCcEEEEEEeecCCCce
Confidence 12345888999887776543 2256667788888777777 99999984 233445677776532 112
Q ss_pred EEeeccCCCCCCCcceEEEEE---CCEEEEEcCCCCC
Q 005493 288 TRIKIRGFHPSPRAGCCGVLC---GTKWYIAGGGSRK 321 (694)
Q Consensus 288 ~~l~~~~~~p~~R~~~sav~~---~~~iyV~GG~~~~ 321 (694)
..... ++.+.+..+|++. .+..+|+||+...
T Consensus 198 vsC~v---l~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 198 VSCTV---LQGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred eEEEE---CCCCceEeeeeEeecCCCceEEEeccccc
Confidence 22211 2445555555543 4788999998653
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.1e-08 Score=73.81 Aligned_cols=44 Identities=32% Similarity=0.611 Sum_probs=40.8
Q ss_pred cceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcc
Q 005493 197 ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 240 (694)
Q Consensus 197 ~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~ 240 (694)
+|++|++++++++|||+||.+.....++++++||+.+++|+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 68999999999999999999986678999999999999999987
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.3e-08 Score=73.65 Aligned_cols=48 Identities=40% Similarity=0.812 Sum_probs=42.3
Q ss_pred CCEEEEEcccc-CCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEE
Q 005493 156 GKKVLLVGGKT-DSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA 206 (694)
Q Consensus 156 ~~~Iyv~GG~~-~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~ 206 (694)
+++||||||.. .....++++|+||+.+++|+.+. ++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 57999999998 35667899999999999999984 79999999999864
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.2e-07 Score=100.09 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=77.0
Q ss_pred CCCCCcceeEEEEECCcEEEEEcCCCCCC-CCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEE-CCEEEEEcCCCCC
Q 005493 244 TGPSPRSNHVAALYDDKNLLIFGGSSKSK-TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRK 321 (694)
Q Consensus 244 ~~P~~R~~hs~~~~~~~~lyv~GG~~~~~-~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~-~~~iyV~GG~~~~ 321 (694)
--+.++..|+++.++++ +||+||.+... .++.+|+||..+.+|......|..|.+|.+|+++++ +++|+|+++....
T Consensus 20 ~~~~~~~~~tav~igdk-~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~ 98 (398)
T PLN02772 20 FGVKPKNRETSVTIGDK-TYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP 98 (398)
T ss_pred ccCCCCCcceeEEECCE-EEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC
Confidence 34568899999999999 99999987654 789999999999999999999999999999999998 6899999986654
Q ss_pred CCcCeEEEEECCCC
Q 005493 322 KRHAETLIFDILKG 335 (694)
Q Consensus 322 ~~~~~v~~yd~~t~ 335 (694)
..++|.+.+.|.
T Consensus 99 --~~~~w~l~~~t~ 110 (398)
T PLN02772 99 --DDSIWFLEVDTP 110 (398)
T ss_pred --ccceEEEEcCCH
Confidence 267888887763
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.4e-08 Score=73.95 Aligned_cols=47 Identities=38% Similarity=0.733 Sum_probs=32.1
Q ss_pred cceeeEEEEE-CCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCC
Q 005493 197 ARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (694)
Q Consensus 197 ~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P 246 (694)
+|++|+++.+ +++||||||.+..+..++++|+||+.+++|+++. ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence 6899999998 5899999999987778999999999999999995 666
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1e-07 Score=71.63 Aligned_cols=45 Identities=27% Similarity=0.519 Sum_probs=40.7
Q ss_pred CccceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeee
Q 005493 146 ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEA 190 (694)
Q Consensus 146 ~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 190 (694)
+|.+|++++++++||++||.......++++++||+.+++|+.+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 467899999999999999998867788999999999999999984
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2e-07 Score=70.92 Aligned_cols=45 Identities=36% Similarity=0.641 Sum_probs=40.7
Q ss_pred CccceEEEEECCEEEEEcCC---CCCCCcCcEEEEECCCCcEEEcccc
Q 005493 88 PRFNHAAAVIGNKMIVVGGE---SGNGLLDDVQVLNFDRFSWTAASSK 132 (694)
Q Consensus 88 ~R~~hs~~~~~~~lyv~GG~---~~~~~~~~v~~yd~~t~~W~~~~~~ 132 (694)
||.+|++++++++||||||. ......+++++||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 69999999999999999999 4555789999999999999999873
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-07 Score=71.09 Aligned_cols=44 Identities=32% Similarity=0.579 Sum_probs=39.8
Q ss_pred cceeeEEEEECCeEEEEccc--cCCCccccceEEeeCCCCcEEEcc
Q 005493 197 ARSGHTVVRASSVLILFGGE--DGKRRKLNDLHMFDLKSLTWLPLH 240 (694)
Q Consensus 197 ~R~~~~~~~~~~~lyv~GG~--~~~~~~~~~v~~yd~~t~~W~~l~ 240 (694)
+|++|++++++++||||||. .......+++++||+.+++|+.++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 68999999999999999999 444568899999999999999987
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-07 Score=72.14 Aligned_cols=46 Identities=41% Similarity=0.731 Sum_probs=30.2
Q ss_pred CcceeEEEEECCcEEEEEcCCCCC-CCCCeEEEEEcCCCcEEEeecc
Q 005493 248 PRSNHVAALYDDKNLLIFGGSSKS-KTLNDLYSLDFETMIWTRIKIR 293 (694)
Q Consensus 248 ~R~~hs~~~~~~~~lyv~GG~~~~-~~~~dv~~yd~~t~~W~~l~~~ 293 (694)
||++|+++.+++..||||||.+.. ..++++|+||+++++|++++.+
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCC
Confidence 699999999975559999999775 6899999999999999999544
|
|
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.4e-07 Score=66.58 Aligned_cols=40 Identities=40% Similarity=0.781 Sum_probs=35.8
Q ss_pred CCCCccceEEEEECCEEEEEcCCC--CCCCcCcEEEEECCCC
Q 005493 85 KPIPRFNHAAAVIGNKMIVVGGES--GNGLLDDVQVLNFDRF 124 (694)
Q Consensus 85 ~P~~R~~hs~~~~~~~lyv~GG~~--~~~~~~~v~~yd~~t~ 124 (694)
+|.+|.+|++++++++||||||.. ....++++|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 488999999999999999999998 4667899999999864
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.3e-05 Score=79.91 Aligned_cols=178 Identities=15% Similarity=0.158 Sum_probs=111.2
Q ss_pred EEEEEECCCCcEEEeeecCCCCCcceeeEEEE-ECCeEEEEccccCCCccccceEEeeCCC----CcEEEcccCCCCCCC
Q 005493 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKS----LTWLPLHCTGTGPSP 248 (694)
Q Consensus 174 ~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t----~~W~~l~~~g~~P~~ 248 (694)
.-..||+.+++++.+.. +.--++.+.+. -+|++++.||.... ...+-.|++.+ ..|.... ..|-.+
T Consensus 47 ~s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~--~~m~~~ 117 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESP--NDMQSG 117 (243)
T ss_pred EEEEEecCCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECc--ccccCC
Confidence 35689999999998873 33334433333 47899999998653 34567787754 6798775 258899
Q ss_pred cceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcC-C-----CcEEEeeccC-CCCCCCcceEEEEECCEEEEEcCCCCC
Q 005493 249 RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE-T-----MIWTRIKIRG-FHPSPRAGCCGVLCGTKWYIAGGGSRK 321 (694)
Q Consensus 249 R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~-t-----~~W~~l~~~~-~~p~~R~~~sav~~~~~iyV~GG~~~~ 321 (694)
|.+.++..+.+..++|+||.... .+.|-+. . ..|..+.... ..+...+=+..+.=+++|||++..
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--- 189 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--- 189 (243)
T ss_pred CccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC---
Confidence 99999999988779999998732 2333332 1 1222221110 012222223333348999999984
Q ss_pred CCcCeEEEEECCCCcE-EEeecCCCCCCCCCcCcEEEEEee------cCCcEEEEEcC
Q 005493 322 KRHAETLIFDILKGEW-SVAITSPSSSVTSNKGFTLVLVQH------KEKDFLVAFGG 372 (694)
Q Consensus 322 ~~~~~v~~yd~~t~~W-~~l~~~~~~~p~~r~~~s~~~v~~------~~~~~i~v~GG 372 (694)
..++||.+++++ ..++..|...-.-...-+++++.. .-.-+|+|.||
T Consensus 190 ----~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgssvmLPl~~~~~~~~~~evlvCGG 243 (243)
T PF07250_consen 190 ----GSIIYDYKTNTVVRTLPDLPGGPRNYPASGSSVMLPLTDTPPNNYTAEVLVCGG 243 (243)
T ss_pred ----CcEEEeCCCCeEEeeCCCCCCCceecCCCcceEEecCccCCCCCCCeEEEEeCC
Confidence 357899999987 677766654222223344555543 11356777777
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.34 E-value=9e-07 Score=64.94 Aligned_cols=41 Identities=39% Similarity=0.658 Sum_probs=36.8
Q ss_pred CCCcceeeEEEEECCeEEEEccccC-CCccccceEEeeCCCC
Q 005493 194 IPVARSGHTVVRASSVLILFGGEDG-KRRKLNDLHMFDLKSL 234 (694)
Q Consensus 194 ~p~~R~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~t~ 234 (694)
+|.+|.+|++++++++||||||.+. ....++++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4899999999999999999999994 6678999999998763
|
|
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.5e-06 Score=64.72 Aligned_cols=47 Identities=32% Similarity=0.684 Sum_probs=41.2
Q ss_pred eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECC
Q 005493 209 VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 259 (694)
Q Consensus 209 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~ 259 (694)
+||++||.... ...+++++||+.+++|+.++ ++|.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 48999998763 56899999999999999987 8999999999988764
|
|
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.3e-06 Score=61.30 Aligned_cols=46 Identities=26% Similarity=0.441 Sum_probs=40.3
Q ss_pred EEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECC
Q 005493 262 LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT 310 (694)
Q Consensus 262 lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~ 310 (694)
|||+||.......+++++||+.+++|+.++.+ |.+|..|+++++++
T Consensus 2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred EEEEeCCCCCceeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 89999997767789999999999999998754 88999999888764
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00034 Score=71.45 Aligned_cols=149 Identities=19% Similarity=0.229 Sum_probs=94.0
Q ss_pred EEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEEECCC----CcEEEeeec
Q 005493 116 VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTET----ECWSVVEAK 191 (694)
Q Consensus 116 v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t----~~W~~~~~~ 191 (694)
-..||+.+++++.+... .-.-|.+++ ..-+++++++||..+ ....+-.|++.+ ..|.+...
T Consensus 48 s~~yD~~tn~~rpl~v~----------td~FCSgg~-~L~dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~e~~~- 112 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ----------TDTFCSGGA-FLPDGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWTESPN- 112 (243)
T ss_pred EEEEecCCCcEEeccCC----------CCCcccCcC-CCCCCCEEEeCCCCc---cccceEEEecCCCCCCCCceECcc-
Confidence 45799999999988752 122223332 334789999999865 233577788765 67987763
Q ss_pred CCCCCcceeeEEEEE-CCeEEEEccccCCCccccceEEeeCCC-----CcEEEcccC-CCCCCCcceeEEEEECCcEEEE
Q 005493 192 GDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKS-----LTWLPLHCT-GTGPSPRSNHVAALYDDKNLLI 264 (694)
Q Consensus 192 g~~p~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t-----~~W~~l~~~-g~~P~~R~~hs~~~~~~~~lyv 264 (694)
.|..+|...+++.+ +++++|+||.... ..+.|.... ..|..+... ...+..-|-+....=+++ |++
T Consensus 113 -~m~~~RWYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~-lFi 185 (243)
T PF07250_consen 113 -DMQSGRWYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGN-LFI 185 (243)
T ss_pred -cccCCCccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCC-EEE
Confidence 48999999988876 6899999998732 122233211 123222211 123333343444444555 999
Q ss_pred EcCCCCCCCCCeEEEEEcCCCcE-EEeecc
Q 005493 265 FGGSSKSKTLNDLYSLDFETMIW-TRIKIR 293 (694)
Q Consensus 265 ~GG~~~~~~~~dv~~yd~~t~~W-~~l~~~ 293 (694)
|+.. +-.+||..++++ +.++..
T Consensus 186 ~an~-------~s~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 186 FANR-------GSIIYDYKTNTVVRTLPDL 208 (243)
T ss_pred EEcC-------CcEEEeCCCCeEEeeCCCC
Confidence 9885 357889999987 667654
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0029 Score=64.40 Aligned_cols=208 Identities=13% Similarity=0.114 Sum_probs=110.3
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceee-EEEEEC----C-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCC
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGH-TVVRAS----S-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGP 246 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~-~~~~~~----~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P 246 (694)
..++++||.|++|..++.....+.....+ ....++ . +++.+...... .....+++|++.++.|+.+... .+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~~Vys~~~~~Wr~~~~~--~~ 90 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEHQVYTLGSNSWRTIECS--PP 90 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccEEEEEeCCCCccccccC--CC
Confidence 37999999999999997411100001111 111122 1 55555443211 1345789999999999998621 22
Q ss_pred CCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEE-eeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcC
Q 005493 247 SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-IKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHA 325 (694)
Q Consensus 247 ~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~-l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~ 325 (694)
........+.+++. +|-+.-.........|..||+.+.+|.. ++.+............+.+++++.++...... ..-
T Consensus 91 ~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~-~~~ 168 (230)
T TIGR01640 91 HHPLKSRGVCINGV-LYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDT-NNF 168 (230)
T ss_pred CccccCCeEEECCE-EEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCC-CcE
Confidence 11112225667777 5555432211111269999999999995 54321111111234556678998887754321 125
Q ss_pred eEEEEE-CCCCcEEEeecCCCCC-CCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccC
Q 005493 326 ETLIFD-ILKGEWSVAITSPSSS-VTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (694)
Q Consensus 326 ~v~~yd-~~t~~W~~l~~~~~~~-p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~ 389 (694)
++|+.+ -....|++.-..+... +.....+....+.+ ++.|++..+. ....-+..||+.++
T Consensus 169 ~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~--~g~I~~~~~~--~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 169 DLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTD--KGEIVLCCED--ENPFYIFYYNVGEN 230 (230)
T ss_pred EEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEee--CCEEEEEeCC--CCceEEEEEeccCC
Confidence 788886 4456799876554321 11111122222222 2456665543 11113888988764
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0017 Score=66.22 Aligned_cols=202 Identities=12% Similarity=0.118 Sum_probs=113.1
Q ss_pred CcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEEC----C-EEEEEccccCCCCCccEEEEEECCCCcEEEe
Q 005493 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG----K-KVLLVGGKTDSGSDRVSVWTFDTETECWSVV 188 (694)
Q Consensus 114 ~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~----~-~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 188 (694)
..+.++||.|+.|..+++... + ...+... .....++ . +|+.+..... ......+.+|+..++.|+.+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~--~----~~~~~~~-~~~~G~d~~~~~YKVv~~~~~~~-~~~~~~~~Vys~~~~~Wr~~ 85 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKS--R----RSNKESD-TYFLGYDPIEKQYKVLCFSDRSG-NRNQSEHQVYTLGSNSWRTI 85 (230)
T ss_pred CcEEEECCCCCCEEecCCCCC--c----ccccccc-eEEEeecccCCcEEEEEEEeecC-CCCCccEEEEEeCCCCcccc
Confidence 568999999999999985210 0 0001111 1111122 2 4555543211 11335789999999999998
Q ss_pred eecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEE-cccCCCCCCCc----ceeEEEEECCcEEE
Q 005493 189 EAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP-LHCTGTGPSPR----SNHVAALYDDKNLL 263 (694)
Q Consensus 189 ~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~-l~~~g~~P~~R----~~hs~~~~~~~~ly 263 (694)
... .+........+.++|.+|-+.-.... .....+..||+.+.+|.. ++ +|..+ ....++.++++ |.
T Consensus 86 ~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~-L~ 157 (230)
T TIGR01640 86 ECS--PPHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGK-LA 157 (230)
T ss_pred ccC--CCCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCE-EE
Confidence 731 12111122266789988888754321 111269999999999995 53 34332 23456677777 55
Q ss_pred EEcCCCCCCCCCeEEEEE-cCCCcEEEeeccCCCCCCCcc----eEEEEECCEEEEEcCCCCCCCcCeEEEEECCCC
Q 005493 264 IFGGSSKSKTLNDLYSLD-FETMIWTRIKIRGFHPSPRAG----CCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG 335 (694)
Q Consensus 264 v~GG~~~~~~~~dv~~yd-~~t~~W~~l~~~~~~p~~R~~----~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~ 335 (694)
++...... ..-++|+++ -....|+++-..+..+.+... ...+..+++|++..+... ..-+..||+.++
T Consensus 158 ~v~~~~~~-~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~---~~~~~~y~~~~~ 230 (230)
T TIGR01640 158 VLKQKKDT-NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDEN---PFYIFYYNVGEN 230 (230)
T ss_pred EEEecCCC-CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCC---ceEEEEEeccCC
Confidence 55433211 124677775 445679986554322222221 234455788888776311 113889998764
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.082 Score=58.41 Aligned_cols=255 Identities=15% Similarity=0.126 Sum_probs=135.4
Q ss_pred CCCceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCCCCcCcEEEEECCCC--cEEEcccccccCCCCCCCCCCCccc
Q 005493 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRG 149 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~p~~~~~~~p~r~~ 149 (694)
....|+.-.-. ..+......+.++.+++||+.+.. ..+++||..++ .|+.-..... ...+...+....
T Consensus 44 ~~~~W~~~~g~-g~~~~~~~~sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~---~~~~~~~~~~~~ 113 (394)
T PRK11138 44 PTTVWSTSVGD-GVGDYYSRLHPAVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKD---GWFSKNKSALLS 113 (394)
T ss_pred cceeeEEEcCC-CCccceeeeccEEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcc---cccccccccccc
Confidence 34568754311 112111223446678999997642 36899998875 6986443100 000000111222
Q ss_pred eEEEEECCEEEEEccccCCCCCccEEEEEECCCC--cEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceE
Q 005493 150 HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETE--CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (694)
Q Consensus 150 ~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~ 227 (694)
.+.++.+++||+.+.. ..++.+|.+++ .|+.-. +.. ...+.++.++.+|+..+ .+.++
T Consensus 114 ~~~~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~-----~~~-~~ssP~v~~~~v~v~~~-------~g~l~ 173 (394)
T PRK11138 114 GGVTVAGGKVYIGSEK-------GQVYALNAEDGEVAWQTKV-----AGE-ALSRPVVSDGLVLVHTS-------NGMLQ 173 (394)
T ss_pred cccEEECCEEEEEcCC-------CEEEEEECCCCCCcccccC-----CCc-eecCCEEECCEEEEECC-------CCEEE
Confidence 3456678888875321 37999999876 487532 111 12223455778887532 24599
Q ss_pred EeeCCCCc--EEEcccCCCCCC--CcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCC--cEEEeeccCC--CCC-
Q 005493 228 MFDLKSLT--WLPLHCTGTGPS--PRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGF--HPS- 298 (694)
Q Consensus 228 ~yd~~t~~--W~~l~~~g~~P~--~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~--~W~~l~~~~~--~p~- 298 (694)
.||+.+.+ |+.-. ..|. .+...+-++.++. +|+..+ + ..++.+|+.++ .|+.-...+. ...
T Consensus 174 ald~~tG~~~W~~~~---~~~~~~~~~~~sP~v~~~~-v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~ 243 (394)
T PRK11138 174 ALNESDGAVKWTVNL---DVPSLTLRGESAPATAFGG-AIVGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEID 243 (394)
T ss_pred EEEccCCCEeeeecC---CCCcccccCCCCCEEECCE-EEEEcC-C-----CEEEEEEccCChhhheeccccCCCccchh
Confidence 99998876 87643 1221 1111223344444 555333 2 35888998876 4764321100 000
Q ss_pred --CCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCC--cEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCC
Q 005493 299 --PRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (694)
Q Consensus 299 --~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~ 374 (694)
.....+.++.++.+|+.+. . ..++++|+.+. .|+.-. . . + ...+.. .+.||+....
T Consensus 244 ~~~~~~~sP~v~~~~vy~~~~-~-----g~l~ald~~tG~~~W~~~~--~-~-~-----~~~~~~----~~~vy~~~~~- 303 (394)
T PRK11138 244 RLVDVDTTPVVVGGVVYALAY-N-----GNLVALDLRSGQIVWKREY--G-S-V-----NDFAVD----GGRIYLVDQN- 303 (394)
T ss_pred cccccCCCcEEECCEEEEEEc-C-----CeEEEEECCCCCEEEeecC--C-C-c-----cCcEEE----CCEEEEEcCC-
Confidence 0112334556888888653 2 25899999886 487521 1 1 1 112222 2577776533
Q ss_pred CCCCCcEEEEECccCC
Q 005493 375 KEPSNQVEVLSIEKNE 390 (694)
Q Consensus 375 ~~~~~~v~~~di~~~~ 390 (694)
..++++|+.+.+
T Consensus 304 ----g~l~ald~~tG~ 315 (394)
T PRK11138 304 ----DRVYALDTRGGV 315 (394)
T ss_pred ----CeEEEEECCCCc
Confidence 368899987664
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.11 Score=57.41 Aligned_cols=191 Identities=17% Similarity=0.205 Sum_probs=107.7
Q ss_pred ceEEEEECCEEEEEcCCCCCCCcCcEEEEECCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCC
Q 005493 91 NHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDS 168 (694)
Q Consensus 91 ~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~ 168 (694)
..+.++.++.||+.+. ...++++|..++ .|+.-... + ...+-++.++.+|+..+.
T Consensus 113 ~~~~~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~------------~--~~ssP~v~~~~v~v~~~~--- 169 (394)
T PRK11138 113 SGGVTVAGGKVYIGSE------KGQVYALNAEDGEVAWQTKVAG------------E--ALSRPVVSDGLVLVHTSN--- 169 (394)
T ss_pred ccccEEECCEEEEEcC------CCEEEEEECCCCCCcccccCCC------------c--eecCCEEECCEEEEECCC---
Confidence 3445667888887432 236899999875 79765431 1 112234557888875332
Q ss_pred CCCccEEEEEECCCCc--EEEeeecCCCCC--cceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCc--EEEccc-
Q 005493 169 GSDRVSVWTFDTETEC--WSVVEAKGDIPV--ARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHC- 241 (694)
Q Consensus 169 ~~~~~~v~~yd~~t~~--W~~~~~~g~~p~--~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~l~~- 241 (694)
..++.||+.+++ |+.-.. .|. .+...+-++.++.+|+..+ ...++.+|+.+.+ |+.-..
T Consensus 170 ----g~l~ald~~tG~~~W~~~~~---~~~~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~ 235 (394)
T PRK11138 170 ----GMLQALNESDGAVKWTVNLD---VPSLTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQ 235 (394)
T ss_pred ----CEEEEEEccCCCEeeeecCC---CCcccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheecccc
Confidence 379999998876 876431 221 1222233445666666432 1357888887764 864321
Q ss_pred -CCCCCCCc---ceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCc--EEEeeccCCCCCCCcceEEEEECCEEEEE
Q 005493 242 -TGTGPSPR---SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIA 315 (694)
Q Consensus 242 -~g~~P~~R---~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~--W~~l~~~~~~p~~R~~~sav~~~~~iyV~ 315 (694)
.+.....| ...+-++.++. +|+.+. + ..++.+|+.+++ |+.-.. .. ...+..++.||+.
T Consensus 236 ~~~~~~~~~~~~~~~sP~v~~~~-vy~~~~-~-----g~l~ald~~tG~~~W~~~~~-----~~---~~~~~~~~~vy~~ 300 (394)
T PRK11138 236 PTGATEIDRLVDVDTTPVVVGGV-VYALAY-N-----GNLVALDLRSGQIVWKREYG-----SV---NDFAVDGGRIYLV 300 (394)
T ss_pred CCCccchhcccccCCCcEEECCE-EEEEEc-C-----CeEEEEECCCCCEEEeecCC-----Cc---cCcEEECCEEEEE
Confidence 01000001 11223344555 776543 2 358999998764 775311 11 1235568999987
Q ss_pred cCCCCCCCcCeEEEEECCCC--cEEE
Q 005493 316 GGGSRKKRHAETLIFDILKG--EWSV 339 (694)
Q Consensus 316 GG~~~~~~~~~v~~yd~~t~--~W~~ 339 (694)
... ..++.+|+.+. .|+.
T Consensus 301 ~~~------g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 301 DQN------DRVYALDTRGGVELWSQ 320 (394)
T ss_pred cCC------CeEEEEECCCCcEEEcc
Confidence 642 35999999876 4764
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.29 Score=53.55 Aligned_cols=227 Identities=16% Similarity=0.171 Sum_probs=121.2
Q ss_pred eEEEEECCEEEEEcCCCCCCCcCcEEEEECCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCC
Q 005493 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (694)
Q Consensus 92 hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~ 169 (694)
.+.++.++.+|+.+.. ..+++||+.++ .|+.-... ....+.++.++.+|+.+..
T Consensus 59 ~~p~v~~~~v~v~~~~------g~v~a~d~~tG~~~W~~~~~~--------------~~~~~p~v~~~~v~v~~~~---- 114 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD------GTVVALDAETGKRLWRVDLDE--------------RLSGGVGADGGLVFVGTEK---- 114 (377)
T ss_pred cceEEECCEEEEECCC------CeEEEEEccCCcEeeeecCCC--------------CcccceEEcCCEEEEEcCC----
Confidence 4456678888876532 36899998875 58764431 0112234456777764321
Q ss_pred CCccEEEEEECCCCc--EEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCc--EEEcccCCCC
Q 005493 170 SDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTG 245 (694)
Q Consensus 170 ~~~~~v~~yd~~t~~--W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~l~~~g~~ 245 (694)
..++.+|..+++ |+... +.. .....++.++.+|+..+ ...++.+|+.+.+ |+.-... +.
T Consensus 115 ---g~l~ald~~tG~~~W~~~~-----~~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~-~~ 177 (377)
T TIGR03300 115 ---GEVIALDAEDGKELWRAKL-----SSE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVT-PA 177 (377)
T ss_pred ---CEEEEEECCCCcEeeeecc-----Cce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCC-Cc
Confidence 379999998765 86532 211 12223445677777532 2458999998764 8754311 10
Q ss_pred CCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCC--cEEEeeccCC--CCCCC---cceEEEEECCEEEEEcCC
Q 005493 246 PSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGF--HPSPR---AGCCGVLCGTKWYIAGGG 318 (694)
Q Consensus 246 P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~--~W~~l~~~~~--~p~~R---~~~sav~~~~~iyV~GG~ 318 (694)
...+...+.++.++. +++|..+ ..++.+|+.++ .|+.-...+. ....+ ...+.++.++.+|+.+.
T Consensus 178 ~~~~~~~sp~~~~~~--v~~~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~- 249 (377)
T TIGR03300 178 LTLRGSASPVIADGG--VLVGFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY- 249 (377)
T ss_pred eeecCCCCCEEECCE--EEEECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc-
Confidence 011122233444543 4444432 25899998776 4764321100 00001 12233455788887653
Q ss_pred CCCCCcCeEEEEECCCC--cEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 319 SRKKRHAETLIFDILKG--EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 319 ~~~~~~~~v~~yd~~t~--~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
. ..+++||+.+. .|..-. . ...+.++. .+.+|+... ...+.++|..+.+
T Consensus 250 ~-----g~l~a~d~~tG~~~W~~~~--~-------~~~~p~~~----~~~vyv~~~-----~G~l~~~d~~tG~ 300 (377)
T TIGR03300 250 Q-----GRVAALDLRSGRVLWKRDA--S-------SYQGPAVD----DNRLYVTDA-----DGVVVALDRRSGS 300 (377)
T ss_pred C-----CEEEEEECCCCcEEEeecc--C-------CccCceEe----CCEEEEECC-----CCeEEEEECCCCc
Confidence 2 25899999875 476521 1 01112222 256776542 2378899987664
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.52 Score=47.51 Aligned_cols=189 Identities=17% Similarity=0.222 Sum_probs=107.4
Q ss_pred EEEECCEEEEEcCCCCCCCcCcEEEEECCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCC
Q 005493 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSD 171 (694)
Q Consensus 94 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~ 171 (694)
.+..++.+|+.. ....+++||+.++ .|+.-.+. ......+..++.+|+..+.
T Consensus 32 ~~~~~~~v~~~~------~~~~l~~~d~~tG~~~W~~~~~~--------------~~~~~~~~~~~~v~v~~~~------ 85 (238)
T PF13360_consen 32 AVPDGGRVYVAS------GDGNLYALDAKTGKVLWRFDLPG--------------PISGAPVVDGGRVYVGTSD------ 85 (238)
T ss_dssp EEEETTEEEEEE------TTSEEEEEETTTSEEEEEEECSS--------------CGGSGEEEETTEEEEEETT------
T ss_pred EEEeCCEEEEEc------CCCEEEEEECCCCCEEEEeeccc--------------cccceeeecccccccccce------
Confidence 344788899884 2357899999876 57665431 1111246778899887622
Q ss_pred ccEEEEEECCCCc--EEE-eeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCc--EEEcccCCCCC
Q 005493 172 RVSVWTFDTETEC--WSV-VEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGP 246 (694)
Q Consensus 172 ~~~v~~yd~~t~~--W~~-~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~l~~~g~~P 246 (694)
+.++.+|..+++ |+. .......+ .+.....++.++.+|+... ...++.+|+.+++ |......+...
T Consensus 86 -~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 86 -GSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp -SEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred -eeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCC
Confidence 289999988765 873 43211111 2333344455666766643 3568999998775 77643111111
Q ss_pred CCc----ceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCc--EEEeeccCCCCCCCcceEEEEECCEEEEEcCCCC
Q 005493 247 SPR----SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSR 320 (694)
Q Consensus 247 ~~R----~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~--W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~ 320 (694)
.+. ...+..++.+..+|+..+... +..+|..++. |+.. .. . ........++.+|+.. ..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~------~~~~d~~tg~~~w~~~-~~-----~-~~~~~~~~~~~l~~~~-~~- 221 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDGRVYVSSGDGR------VVAVDLATGEKLWSKP-IS-----G-IYSLPSVDGGTLYVTS-SD- 221 (238)
T ss_dssp --EEEETTEEEEEECCTTEEEEECCTSS------EEEEETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE-TT-
T ss_pred cceeeecccccceEEECCEEEEEcCCCe------EEEEECCCCCEEEEec-CC-----C-ccCCceeeCCEEEEEe-CC-
Confidence 110 011233333335888766442 6677999987 7332 21 1 1111344577888777 33
Q ss_pred CCCcCeEEEEECCCCc
Q 005493 321 KKRHAETLIFDILKGE 336 (694)
Q Consensus 321 ~~~~~~v~~yd~~t~~ 336 (694)
..++++|+++.+
T Consensus 222 ----~~l~~~d~~tG~ 233 (238)
T PF13360_consen 222 ----GRLYALDLKTGK 233 (238)
T ss_dssp ----TEEEEEETTTTE
T ss_pred ----CEEEEEECCCCC
Confidence 369999999874
|
... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.82 Score=49.97 Aligned_cols=187 Identities=16% Similarity=0.179 Sum_probs=100.8
Q ss_pred EEEECCEEEEEcCCCCCCCcCcEEEEECCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCC
Q 005493 94 AAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSD 171 (694)
Q Consensus 94 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~ 171 (694)
.++.++.+|+.+. + ..++.||+.++ .|+..... . ...+.+..++.+|+..+.
T Consensus 101 p~v~~~~v~v~~~-~-----g~l~ald~~tG~~~W~~~~~~----------~----~~~~p~v~~~~v~v~~~~------ 154 (377)
T TIGR03300 101 VGADGGLVFVGTE-K-----GEVIALDAEDGKELWRAKLSS----------E----VLSPPLVANGLVVVRTND------ 154 (377)
T ss_pred eEEcCCEEEEEcC-C-----CEEEEEECCCCcEeeeeccCc----------e----eecCCEEECCEEEEECCC------
Confidence 3445677776432 2 46899998775 58764321 0 112234457777775431
Q ss_pred ccEEEEEECCCCc--EEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCc--EEEcccCCCCCC
Q 005493 172 RVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPS 247 (694)
Q Consensus 172 ~~~v~~yd~~t~~--W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~l~~~g~~P~ 247 (694)
..++.+|+.+++ |+..... .....+...+.+..++.+| +|.. ...++.+|+.+.+ |+.-. ..|.
T Consensus 155 -g~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~sp~~~~~~v~-~~~~------~g~v~ald~~tG~~~W~~~~---~~~~ 222 (377)
T TIGR03300 155 -GRLTALDAATGERLWTYSRVT-PALTLRGSASPVIADGGVL-VGFA------GGKLVALDLQTGQPLWEQRV---ALPK 222 (377)
T ss_pred -CeEEEEEcCCCceeeEEccCC-CceeecCCCCCEEECCEEE-EECC------CCEEEEEEccCCCEeeeecc---ccCC
Confidence 369999998764 7653310 0001122233345566554 4432 1358899987764 76432 1111
Q ss_pred C-----c---ceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCc--EEEeeccCCCCCCCcceEEEEECCEEEEEcC
Q 005493 248 P-----R---SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGTKWYIAGG 317 (694)
Q Consensus 248 ~-----R---~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~--W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG 317 (694)
. + ...+.++.++. +|+.+.. ..++.||++++. |+.-. + ...+.++.++.+|+...
T Consensus 223 g~~~~~~~~~~~~~p~~~~~~-vy~~~~~------g~l~a~d~~tG~~~W~~~~-----~---~~~~p~~~~~~vyv~~~ 287 (377)
T TIGR03300 223 GRTELERLVDVDGDPVVDGGQ-VYAVSYQ------GRVAALDLRSGRVLWKRDA-----S---SYQGPAVDDNRLYVTDA 287 (377)
T ss_pred CCCchhhhhccCCccEEECCE-EEEEEcC------CEEEEEECCCCcEEEeecc-----C---CccCceEeCCEEEEECC
Confidence 1 1 11222333443 6664432 359999997754 65421 1 11233456889988753
Q ss_pred CCCCCCcCeEEEEECCCC--cEEE
Q 005493 318 GSRKKRHAETLIFDILKG--EWSV 339 (694)
Q Consensus 318 ~~~~~~~~~v~~yd~~t~--~W~~ 339 (694)
...++++|..+. .|+.
T Consensus 288 ------~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 288 ------DGVVVALDRRSGSELWKN 305 (377)
T ss_pred ------CCeEEEEECCCCcEEEcc
Confidence 135899999876 4765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.53 E-value=1.1 Score=45.67 Aligned_cols=222 Identities=11% Similarity=0.039 Sum_probs=118.9
Q ss_pred CCEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEE--CCEEEEEccccCCCCCccEE
Q 005493 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSV 175 (694)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~--~~~Iyv~GG~~~~~~~~~~v 175 (694)
++.||+..- ....++.+++.+..-..+.. +. -.+++.. ++.+|+.... .+
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~-------------~~--~~G~~~~~~~g~l~v~~~~--------~~ 62 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDL-------------PG--PNGMAFDRPDGRLYVADSG--------GI 62 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEES-------------SS--EEEEEEECTTSEEEEEETT--------CE
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEec-------------CC--CceEEEEccCCEEEEEEcC--------ce
Confidence 467887732 23579999999987766543 11 2334444 6788887543 34
Q ss_pred EEEECCCCcEEEeeec--CCCCCcceeeEEEEECCeEEEEccccCCCccc--cceEEeeCCCCcEEEcccCCCCCCCcce
Q 005493 176 WTFDTETECWSVVEAK--GDIPVARSGHTVVRASSVLILFGGEDGKRRKL--NDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (694)
Q Consensus 176 ~~yd~~t~~W~~~~~~--g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~--~~v~~yd~~t~~W~~l~~~g~~P~~R~~ 251 (694)
..+|+.+++++.+... +..+..+..-.++--++.+|+---........ ..+|++++. .+.+.+.. .+. .-
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~---~p 136 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLG---FP 136 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EES---SE
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Ccc---cc
Confidence 6669999999887643 11133444434444467877753222111112 679999998 66665532 111 12
Q ss_pred eEEEEEC-CcEEEEEcCCCCCCCCCeEEEEEcCC--CcEEEeeccCCCCCCCcce-EEEEE-CCEEEEEcCCCCCCCcCe
Q 005493 252 HVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFET--MIWTRIKIRGFHPSPRAGC-CGVLC-GTKWYIAGGGSRKKRHAE 326 (694)
Q Consensus 252 hs~~~~~-~~~lyv~GG~~~~~~~~dv~~yd~~t--~~W~~l~~~~~~p~~R~~~-sav~~-~~~iyV~GG~~~~~~~~~ 326 (694)
.+++... ++.+|+.-- ..+.+++|++.. ..+.........+...... .+++. ++.|||..-.. ..
T Consensus 137 NGi~~s~dg~~lyv~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-----~~ 206 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-----GR 206 (246)
T ss_dssp EEEEEETTSSEEEEEET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-----TE
T ss_pred cceEECCcchheeeccc-----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-----CE
Confidence 3455544 445666422 234699999863 3344322111112222122 23332 68899973222 36
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEE
Q 005493 327 TLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAF 370 (694)
Q Consensus 327 v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~ 370 (694)
+++||+.-.....+.. |. . ..+.+++..++.+.|||.
T Consensus 207 I~~~~p~G~~~~~i~~-p~----~--~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 207 IVVFDPDGKLLREIEL-PV----P--RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEETTSCEEEEEE--SS----S--SEEEEEEESTTSSEEEEE
T ss_pred EEEECCCccEEEEEcC-CC----C--CEEEEEEECCCCCEEEEE
Confidence 9999999665655542 21 1 345555554455667664
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.36 E-value=2.7 Score=47.97 Aligned_cols=144 Identities=13% Similarity=0.143 Sum_probs=74.2
Q ss_pred CCCceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCCCCcCcEEEEECCCC--cEEEcccccccCCCCCCCCCCCccc
Q 005493 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRG 149 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~p~~~~~~~p~r~~ 149 (694)
.+..|+.-. . . ......+-++.++.+|+.... ..++.+|+.+. .|+.-...... . ..+....
T Consensus 39 ~~~~W~~~~-~-~--~~~~~~sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~-~-----~~~~~~~ 102 (488)
T cd00216 39 LKVAWTFST-G-D--ERGQEGTPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPAD-R-----GCCDVVN 102 (488)
T ss_pred ceeeEEEEC-C-C--CCCcccCCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCcc-c-----ccccccc
Confidence 456786532 1 1 122333456778999986542 46899999875 69875431100 0 0001111
Q ss_pred eEEEEEC-CEEEEEccccCCCCCccEEEEEECCCCc--EEEeeecCCCCCcceeeEEEEECCeEEEEccccCCC---ccc
Q 005493 150 HSLISWG-KKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKR---RKL 223 (694)
Q Consensus 150 ~s~v~~~-~~Iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~---~~~ 223 (694)
...+..+ +.||+... ...++.+|..+++ |+.-......+......+.++.++.+| +|..+... ...
T Consensus 103 ~g~~~~~~~~V~v~~~-------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~-vg~~~~~~~~~~~~ 174 (488)
T cd00216 103 RGVAYWDPRKVFFGTF-------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVI-IGSSGAEFFACGVR 174 (488)
T ss_pred CCcEEccCCeEEEecC-------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEE-EeccccccccCCCC
Confidence 1234445 77776432 2379999998765 775431000000011223345566555 44332211 124
Q ss_pred cceEEeeCCCCc--EEEc
Q 005493 224 NDLHMFDLKSLT--WLPL 239 (694)
Q Consensus 224 ~~v~~yd~~t~~--W~~l 239 (694)
..++.||..+.+ |+.-
T Consensus 175 g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 175 GALRAYDVETGKLLWRFY 192 (488)
T ss_pred cEEEEEECCCCceeeEee
Confidence 678999998765 8753
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.055 Score=56.72 Aligned_cols=124 Identities=23% Similarity=0.309 Sum_probs=77.9
Q ss_pred EEccccC-CCC-CccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEE-CCeEEEEccccCCCccccceEEeeCCCCcEE
Q 005493 161 LVGGKTD-SGS-DRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWL 237 (694)
Q Consensus 161 v~GG~~~-~~~-~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 237 (694)
++||.-. .+. .+..+..||+.+.+|..+.. . -.. .-..+... ++++|+.|-.+.++.....+-.||..+.+|+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~--~-i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~ 77 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGN--G-ISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS 77 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCC--C-ceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee
Confidence 3455433 333 57899999999999998653 1 111 11233334 5677777766555434567999999999999
Q ss_pred EcccC--CCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeec
Q 005493 238 PLHCT--GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (694)
Q Consensus 238 ~l~~~--g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~ 292 (694)
.+... ..+|.+....+....+...+++.|... .-..-+..|| ...|+.+..
T Consensus 78 ~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~--~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 78 SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSA--NGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred ecCCcccccCCCcEEEEEeeccCCceEEEeceec--CCCceEEEEc--CCceEeccc
Confidence 88742 346766544443334444577777652 2233466665 889999865
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=96.27 E-value=1.7 Score=44.81 Aligned_cols=186 Identities=12% Similarity=0.072 Sum_probs=89.2
Q ss_pred EEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEE-E-CCEEEEEccccCCCCCccEEEE
Q 005493 100 KMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-W-GKKVLLVGGKTDSGSDRVSVWT 177 (694)
Q Consensus 100 ~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~-~-~~~Iyv~GG~~~~~~~~~~v~~ 177 (694)
.+|+.++.+ ..+.+||+.++.-...-.. .... .+++. - +..+|+.++. .+.++.
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~----------~~~~---~~l~~~~dg~~l~~~~~~------~~~v~~ 57 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPV----------GQRP---RGITLSKDGKLLYVCASD------SDTIQV 57 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEEC----------CCCC---CceEECCCCCEEEEEECC------CCeEEE
Confidence 466666643 3788899887653332210 0111 11222 2 3457777653 237899
Q ss_pred EECCCCcEEEeeecCCCCCcceeeEEEEE-C-CeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEE
Q 005493 178 FDTETECWSVVEAKGDIPVARSGHTVVRA-S-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (694)
Q Consensus 178 yd~~t~~W~~~~~~g~~p~~R~~~~~~~~-~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~ 255 (694)
||+.+.+....-.. .+.+ ..++.. + +.+|+.++.+ +.+..||+.+.+-... .+.....++++
T Consensus 58 ~d~~~~~~~~~~~~--~~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~~~~-----~~~~~~~~~~~ 121 (300)
T TIGR03866 58 IDLATGEVIGTLPS--GPDP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKVLAE-----IPVGVEPEGMA 121 (300)
T ss_pred EECCCCcEEEeccC--CCCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeEEeE-----eeCCCCcceEE
Confidence 99988776542211 1111 122232 3 3566654322 3588999987543221 11111123344
Q ss_pred EECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCC
Q 005493 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG 335 (694)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~ 335 (694)
...+..+++++.... +.++.||..+..-......+ .+..+.+..-+++.+++++... ..+.+||+.+.
T Consensus 122 ~~~dg~~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~----~~v~i~d~~~~ 189 (300)
T TIGR03866 122 VSPDGKIVVNTSETT----NMAHFIDTKTYEIVDNVLVD----QRPRFAEFTADGKELWVSSEIG----GTVSVIDVATR 189 (300)
T ss_pred ECCCCCEEEEEecCC----CeEEEEeCCCCeEEEEEEcC----CCccEEEECCCCCEEEEEcCCC----CEEEEEEcCcc
Confidence 444433555554322 24667888765443221111 1112222222455444444322 25889999876
Q ss_pred cE
Q 005493 336 EW 337 (694)
Q Consensus 336 ~W 337 (694)
..
T Consensus 190 ~~ 191 (300)
T TIGR03866 190 KV 191 (300)
T ss_pred ee
Confidence 54
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.94 E-value=2.1 Score=42.96 Aligned_cols=210 Identities=20% Similarity=0.267 Sum_probs=116.2
Q ss_pred CcEEEEECCCC--cEEEcccccccCCCCCCCCCCCccceE--EEEECCEEEEEccccCCCCCccEEEEEECCCCc--EEE
Q 005493 114 DDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHS--LISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSV 187 (694)
Q Consensus 114 ~~v~~yd~~t~--~W~~~~~~~~~~p~~~~~~~p~r~~~s--~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~ 187 (694)
..+.++|+.++ .|+.-.. . ...+.. .+..++.+|+..+ ...+++||..+++ |+.
T Consensus 3 g~l~~~d~~tG~~~W~~~~~------------~-~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~ 62 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLG------------P-GIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRF 62 (238)
T ss_dssp SEEEEEETTTTEEEEEEECS------------S-SCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEECC------------C-CCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEe
Confidence 35678898775 6877321 1 112222 4447889998842 2389999998876 654
Q ss_pred eeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCc--EEE-cccCCCCCCCcceeEEEEECCcEEEE
Q 005493 188 VEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLP-LHCTGTGPSPRSNHVAALYDDKNLLI 264 (694)
Q Consensus 188 ~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~-l~~~g~~P~~R~~hs~~~~~~~~lyv 264 (694)
-. +.+-.. ..+..++.+|+..+ -+.++.+|..+.+ |+. .......+ .+......+.++. +|+
T Consensus 63 ~~-----~~~~~~-~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~-~~~ 127 (238)
T PF13360_consen 63 DL-----PGPISG-APVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDR-LYV 127 (238)
T ss_dssp EC-----SSCGGS-GEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTE-EEE
T ss_pred ec-----cccccc-eeeecccccccccc-------eeeeEecccCCcceeeeeccccccccc-cccccCceEecCE-EEE
Confidence 32 222111 24667888888751 1379999987765 984 43211111 2223334444444 555
Q ss_pred EcCCCCCCCCCeEEEEEcCCCc--EEEeeccCCCCCCC--------cceEEEEECCEEEEEcCCCCCCCcCeEEEEECCC
Q 005493 265 FGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPR--------AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILK 334 (694)
Q Consensus 265 ~GG~~~~~~~~dv~~yd~~t~~--W~~l~~~~~~p~~R--------~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t 334 (694)
... ...++.+|++++. |..-... +... .....+..++.+|+..+... +..+|..+
T Consensus 128 ~~~------~g~l~~~d~~tG~~~w~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~------~~~~d~~t 192 (238)
T PF13360_consen 128 GTS------SGKLVALDPKTGKLLWKYPVGE---PRGSSPISSFSDINGSPVISDGRVYVSSGDGR------VVAVDLAT 192 (238)
T ss_dssp EET------CSEEEEEETTTTEEEEEEESST---T-SS--EEEETTEEEEEECCTTEEEEECCTSS------EEEEETTT
T ss_pred Eec------cCcEEEEecCCCcEEEEeecCC---CCCCcceeeecccccceEEECCEEEEEcCCCe------EEEEECCC
Confidence 442 2469999998765 6654322 1111 11233334678888876442 66679999
Q ss_pred Cc--EEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 335 GE--WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 335 ~~--W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
.. |+... . . ...... ...+.+|+.. . ...+.++|+.+.+
T Consensus 193 g~~~w~~~~--~-----~---~~~~~~--~~~~~l~~~~-~----~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 193 GEKLWSKPI--S-----G---IYSLPS--VDGGTLYVTS-S----DGRLYALDLKTGK 233 (238)
T ss_dssp TEEEEEECS--S---------ECECEE--CCCTEEEEEE-T----TTEEEEEETTTTE
T ss_pred CCEEEEecC--C-----C---ccCCce--eeCCEEEEEe-C----CCEEEEEECCCCC
Confidence 86 84421 1 1 111011 2235666655 2 2478999998876
|
... |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.59 Score=49.11 Aligned_cols=120 Identities=19% Similarity=0.321 Sum_probs=77.5
Q ss_pred EcC-CCCCC--CcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEccccCCCCCccEEEEEE
Q 005493 104 VGG-ESGNG--LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFD 179 (694)
Q Consensus 104 ~GG-~~~~~--~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~-~~~Iyv~GG~~~~~~~~~~v~~yd 179 (694)
+|| +...+ .+..++.||+.+.+|..+... +.. .-..+... ++++|+.|-....+.....+-.||
T Consensus 3 VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~-----------i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd 70 (281)
T PF12768_consen 3 VGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNG-----------ISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYD 70 (281)
T ss_pred EeeecCCCCCcCCCEEEEEECCCCEeecCCCC-----------ceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEe
Confidence 455 44444 478999999999999998762 211 12344444 678888876655554566799999
Q ss_pred CCCCcEEEeeec--CCCCCcceeeEEEEEC-CeEEEEccccCCCccccceEEeeCCCCcEEEcc
Q 005493 180 TETECWSVVEAK--GDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLH 240 (694)
Q Consensus 180 ~~t~~W~~~~~~--g~~p~~R~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~ 240 (694)
..+.+|..+... ..+|.+.........+ +.+++.|.. ..+ ..-+..| +..+|..+.
T Consensus 71 ~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g--~~~l~~~--dGs~W~~i~ 129 (281)
T PF12768_consen 71 FKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS-ANG--STFLMKY--DGSSWSSIG 129 (281)
T ss_pred cCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEecee-cCC--CceEEEE--cCCceEecc
Confidence 999999988752 2456554333333223 478877776 322 3446666 467899886
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=4.6 Score=45.48 Aligned_cols=147 Identities=14% Similarity=0.142 Sum_probs=80.1
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceeeEEEE-ECC-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcc
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~ 250 (694)
..+|.+|+.+++-..+.. .+..-. ..+. -++ .|++....++ ..++|.+|+.+++.+.+... .. ..
T Consensus 242 ~~L~~~dl~tg~~~~lt~---~~g~~~--~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~---~~-~~ 308 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS---FPGING--APRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRH---RA-ID 308 (448)
T ss_pred cEEEEEECCCCCeEEecC---CCCCcC--CeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccC---CC-Cc
Confidence 589999999888766652 221111 1222 233 4555433322 25799999999998887521 11 11
Q ss_pred eeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEE
Q 005493 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIF 330 (694)
Q Consensus 251 ~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~y 330 (694)
......-+++.|++...... ..++|++|+.++.++.+...+... ...+....++.||+.+. ... ...++.+
T Consensus 309 ~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~~---~~~~~SpDG~~l~~~~~-~~g--~~~I~~~ 379 (448)
T PRK04792 309 TEPSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQN---LGGSITPDGRSMIMVNR-TNG--KFNIARQ 379 (448)
T ss_pred cceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCCC---cCeeECCCCCEEEEEEe-cCC--ceEEEEE
Confidence 11112224454444432222 257999999999998886422111 11111112445555443 221 2468999
Q ss_pred ECCCCcEEEee
Q 005493 331 DILKGEWSVAI 341 (694)
Q Consensus 331 d~~t~~W~~l~ 341 (694)
|+.+.....+.
T Consensus 380 dl~~g~~~~lt 390 (448)
T PRK04792 380 DLETGAMQVLT 390 (448)
T ss_pred ECCCCCeEEcc
Confidence 99998877654
|
|
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.39 Score=52.09 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=77.4
Q ss_pred ECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccc----cceEEe-
Q 005493 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKL----NDLHMF- 229 (694)
Q Consensus 155 ~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~----~~v~~y- 229 (694)
.+++|+..++. ..+.+||..+..-...+ .++.+.....++.++++||++.......... ..++.+
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~ 144 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV 144 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence 58899998665 24889999999888666 4666666667777899999998774331110 144444
Q ss_pred -e--------CCCCcEEEcccCCCCCCCcce-------eEEEEECCcEEEE-EcCCCCCCCCCeEEEEEcCCCcEEEeec
Q 005493 230 -D--------LKSLTWLPLHCTGTGPSPRSN-------HVAALYDDKNLLI-FGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (694)
Q Consensus 230 -d--------~~t~~W~~l~~~g~~P~~R~~-------hs~~~~~~~~lyv-~GG~~~~~~~~dv~~yd~~t~~W~~l~~ 292 (694)
+ .....|..++ +.|..+.. .+-+++++..|+| .-|.. .-.|.||..+.+|+.+..
T Consensus 145 ~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 145 YRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccc
Confidence 3 2344688775 33433322 2334445666777 43321 238999999999999954
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.17 Score=54.86 Aligned_cols=151 Identities=20% Similarity=0.184 Sum_probs=92.0
Q ss_pred CeEEEEccccCCCccccceEEeeCCCCcE-EEcccCCCCCCCcceeEEEEEC-CcEEEEEcCCCCCCCCCeEEEEEcCCC
Q 005493 208 SVLILFGGEDGKRRKLNDLHMFDLKSLTW-LPLHCTGTGPSPRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETM 285 (694)
Q Consensus 208 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W-~~l~~~g~~P~~R~~hs~~~~~-~~~lyv~GG~~~~~~~~dv~~yd~~t~ 285 (694)
..+.+.+|.+.. -.+|..|-.++.- +.+... ..| .. +++... +...++++|+.. -+|.||+.+.
T Consensus 225 ~plllvaG~d~~----lrifqvDGk~N~~lqS~~l~-~fP--i~--~a~f~p~G~~~i~~s~rrk-----y~ysyDle~a 290 (514)
T KOG2055|consen 225 APLLLVAGLDGT----LRIFQVDGKVNPKLQSIHLE-KFP--IQ--KAEFAPNGHSVIFTSGRRK-----YLYSYDLETA 290 (514)
T ss_pred CceEEEecCCCc----EEEEEecCccChhheeeeec-cCc--cc--eeeecCCCceEEEecccce-----EEEEeecccc
Confidence 578999998764 3466666666552 111111 122 22 223332 333677777754 3899999999
Q ss_pred cEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCc
Q 005493 286 IWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKD 365 (694)
Q Consensus 286 ~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~ 365 (694)
.-+++..+...+.+-...-.+..++.++++-|..+- |+++..+++.|..--..+ ...+...+...+ .
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~-----I~lLhakT~eli~s~Kie-------G~v~~~~fsSds-k 357 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH-----IHLLHAKTKELITSFKIE-------GVVSDFTFSSDS-K 357 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCce-----EEeehhhhhhhhheeeec-------cEEeeEEEecCC-c
Confidence 999987754444322222334455667777776553 888888999886532211 123334444333 5
Q ss_pred EEEEEcCCCCCCCCcEEEEECccCC
Q 005493 366 FLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 366 ~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
.||+.||++ .||++|+..+.
T Consensus 358 ~l~~~~~~G-----eV~v~nl~~~~ 377 (514)
T KOG2055|consen 358 ELLASGGTG-----EVYVWNLRQNS 377 (514)
T ss_pred EEEEEcCCc-----eEEEEecCCcc
Confidence 899999987 89999998875
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=3.9 Score=44.16 Aligned_cols=242 Identities=13% Similarity=0.150 Sum_probs=118.1
Q ss_pred CCCceEEeeccCCCCCCc-cceEEEEECCEEEEEcCCCCCCCcCcEEEEECCC--CcEEEcccccccCCCCCCCCCCCcc
Q 005493 72 NSENWMVLSIAGDKPIPR-FNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDR--FSWTAASSKLYLSPSSLPLKIPACR 148 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~~R-~~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~~p~~~~~~~p~r~ 148 (694)
.-..|+.+... .|... ...++.+.++..|+.|. . .. +|.... .+|+.+... ...|..
T Consensus 74 gG~tW~~~~~~--~~~~~~~l~~v~~~~~~~~~~G~-~-----g~--i~~S~DgG~tW~~~~~~---------~~~~~~- 133 (334)
T PRK13684 74 GGETWEERSLD--LPEENFRLISISFKGDEGWIVGQ-P-----SL--LLHTTDGGKNWTRIPLS---------EKLPGS- 133 (334)
T ss_pred CCCCceECccC--CcccccceeeeEEcCCcEEEeCC-C-----ce--EEEECCCCCCCeEccCC---------cCCCCC-
Confidence 35689987532 22222 22233334555676653 1 11 333333 599988641 011111
Q ss_pred ceEEEEE-CCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceE
Q 005493 149 GHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (694)
Q Consensus 149 ~~s~v~~-~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~ 227 (694)
.+.+..+ ++.+|+.|.. ..+++-+-.-.+|+.+.. +..-..+.+....+..|+..|..+ .++
T Consensus 134 ~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G------~i~ 196 (334)
T PRK13684 134 PYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG------NFY 196 (334)
T ss_pred ceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCc------eEE
Confidence 1223333 3556666543 256766666789998763 222233444444444444444332 233
Q ss_pred Ee-eCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEE--EcCCCcEEEeeccCCCCCCCcceE
Q 005493 228 MF-DLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL--DFETMIWTRIKIRGFHPSPRAGCC 304 (694)
Q Consensus 228 ~y-d~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~y--d~~t~~W~~l~~~~~~p~~R~~~s 304 (694)
.- |....+|+.+. .+..+.-++++...+..++++|... ..++ +-...+|+.+... ........++
T Consensus 197 ~s~~~gg~tW~~~~----~~~~~~l~~i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~~-~~~~~~~l~~ 264 (334)
T PRK13684 197 STWEPGQTAWTPHQ----RNSSRRLQSMGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPIIP-EITNGYGYLD 264 (334)
T ss_pred EEcCCCCCeEEEee----CCCcccceeeeEcCCCCEEEEecCC-------EEEEccCCCCCccccccCC-ccccccceee
Confidence 32 34446799884 3445555666665555478877542 2334 2234589976431 1111112233
Q ss_pred EEEE-CCEEEEEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCC
Q 005493 305 GVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (694)
Q Consensus 305 av~~-~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~ 374 (694)
++.. ++.+|++|... .++.-.-.-.+|+.+.... .. +...+.++... .+..|++|...
T Consensus 265 v~~~~~~~~~~~G~~G------~v~~S~d~G~tW~~~~~~~-~~--~~~~~~~~~~~---~~~~~~~G~~G 323 (334)
T PRK13684 265 LAYRTPGEIWAGGGNG------TLLVSKDGGKTWEKDPVGE-EV--PSNFYKIVFLD---PEKGFVLGQRG 323 (334)
T ss_pred EEEcCCCCEEEEcCCC------eEEEeCCCCCCCeECCcCC-CC--CcceEEEEEeC---CCceEEECCCc
Confidence 3333 56788887632 2333333456899864211 11 12233444332 34678888754
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.69 Score=50.44 Aligned_cols=192 Identities=16% Similarity=0.192 Sum_probs=102.6
Q ss_pred CEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCE-EEEEccccCCCCCccEEEE
Q 005493 99 NKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKK-VLLVGGKTDSGSDRVSVWT 177 (694)
Q Consensus 99 ~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~-Iyv~GG~~~~~~~~~~v~~ 177 (694)
-.+.+.+|+++. -.++..|-.++. .+..+- +.-.+.. .+...-+|. .++++|.. .-+|.
T Consensus 225 ~plllvaG~d~~---lrifqvDGk~N~--~lqS~~--------l~~fPi~-~a~f~p~G~~~i~~s~rr------ky~ys 284 (514)
T KOG2055|consen 225 APLLLVAGLDGT---LRIFQVDGKVNP--KLQSIH--------LEKFPIQ-KAEFAPNGHSVIFTSGRR------KYLYS 284 (514)
T ss_pred CceEEEecCCCc---EEEEEecCccCh--hheeee--------eccCccc-eeeecCCCceEEEecccc------eEEEE
Confidence 348888997743 234444555544 333311 0001111 122222444 77777653 36999
Q ss_pred EECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEE
Q 005493 178 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257 (694)
Q Consensus 178 yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~ 257 (694)
||+.+.+...+.+...++..-...--+...+.++++-|..+ .++.+...|+.|..-- .++.-....+.. -
T Consensus 285 yDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli~s~---KieG~v~~~~fs-S 354 (514)
T KOG2055|consen 285 YDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELITSF---KIEGVVSDFTFS-S 354 (514)
T ss_pred eeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhhhee---eeccEEeeEEEe-c
Confidence 99999999888754444422222122334556777766543 4777777888875322 333333333333 4
Q ss_pred CCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEE-ECCEEEEEcCCCCCCCcCeEEEEECCC
Q 005493 258 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDILK 334 (694)
Q Consensus 258 ~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~-~~~~iyV~GG~~~~~~~~~v~~yd~~t 334 (694)
+++.||+.||++ .||+||+..+.....-.. --+-++-+.|. .++.++..|--.+ =+-+||.++
T Consensus 355 dsk~l~~~~~~G------eV~v~nl~~~~~~~rf~D---~G~v~gts~~~S~ng~ylA~GS~~G-----iVNIYd~~s 418 (514)
T KOG2055|consen 355 DSKELLASGGTG------EVYVWNLRQNSCLHRFVD---DGSVHGTSLCISLNGSYLATGSDSG-----IVNIYDGNS 418 (514)
T ss_pred CCcEEEEEcCCc------eEEEEecCCcceEEEEee---cCccceeeeeecCCCceEEeccCcc-----eEEEeccch
Confidence 556799999875 599999988754332211 11223333332 3555444443333 255777544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=5.2 Score=44.81 Aligned_cols=187 Identities=13% Similarity=0.052 Sum_probs=93.7
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECC-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcce
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~ 251 (694)
..+|++|+.++....+.. .+..-... ...-++ .|++....++ ..++|.+|+.+.....+.. .+.. ..
T Consensus 226 ~~i~~~dl~~g~~~~l~~---~~g~~~~~-~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~---~~~~-~~ 293 (435)
T PRK05137 226 PRVYLLDLETGQRELVGN---FPGMTFAP-RFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTD---SPAI-DT 293 (435)
T ss_pred CEEEEEECCCCcEEEeec---CCCcccCc-EECCCCCEEEEEEecCC----CceEEEEECCCCceEEccC---CCCc-cC
Confidence 589999999998877652 22211111 111234 4544433222 3679999999988877752 2211 11
Q ss_pred eEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEE-EECCEEEEEcCCCCCCCcCeEEEE
Q 005493 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV-LCGTKWYIAGGGSRKKRHAETLIF 330 (694)
Q Consensus 252 hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav-~~~~~iyV~GG~~~~~~~~~v~~y 330 (694)
.....-+++.|++.....+ ..++|++|+.+...+.+... ......... ..++.|++.....+ ...++++
T Consensus 294 ~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~~---~~~i~~~ 363 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQGGG---QFSIGVM 363 (435)
T ss_pred ceeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEcCCC---ceEEEEE
Confidence 1122223443443322211 25799999988888777542 111111111 12445554432111 2468999
Q ss_pred ECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCC-CCcEEEEECccCC
Q 005493 331 DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNE 390 (694)
Q Consensus 331 d~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~-~~~v~~~di~~~~ 390 (694)
|+.......+.. .. ......+..++ ..|+......+.. ...++.+++....
T Consensus 364 d~~~~~~~~lt~--~~------~~~~p~~spDG-~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 364 KPDGSGERILTS--GF------LVEGPTWAPNG-RVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred ECCCCceEeccC--CC------CCCCCeECCCC-CEEEEEEccCCCCCcceEEEEECCCCc
Confidence 987766655431 10 11222333333 3454433322221 2578888886544
|
|
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.44 Score=51.64 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=75.7
Q ss_pred ECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCC-----eEEEE
Q 005493 206 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLN-----DLYSL 280 (694)
Q Consensus 206 ~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~-----dv~~y 280 (694)
.+++|+..+.. ....+||..+..-...+ .++.+.....++.++++ ||++.......... .++++
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~-LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDK-LYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCe-EEEeeccCccccccCccceeEEEe
Confidence 57888888654 34789999998877554 56666667777888888 99998764321111 33344
Q ss_pred --E--------cCCCcEEEeeccCCCCCCCc-------ceEEEEE-CCEEEE-EcCCCCCCCcCeEEEEECCCCcEEEee
Q 005493 281 --D--------FETMIWTRIKIRGFHPSPRA-------GCCGVLC-GTKWYI-AGGGSRKKRHAETLIFDILKGEWSVAI 341 (694)
Q Consensus 281 --d--------~~t~~W~~l~~~~~~p~~R~-------~~sav~~-~~~iyV-~GG~~~~~~~~~v~~yd~~t~~W~~l~ 341 (694)
+ ...-.|..++.. |..+. -.+-+++ +..|+| .-|.. .-+|.||..+.+|+.+.
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~P---Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPPP---PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHG 215 (342)
T ss_pred ccccccccccCCCcceEEcCCCC---CccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeecc
Confidence 3 223467776542 43322 2344455 678888 55432 23899999999999975
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=95.16 E-value=6.5 Score=43.38 Aligned_cols=146 Identities=14% Similarity=0.076 Sum_probs=79.9
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceeeEEEE-ECC-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcc
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~ 250 (694)
..++++|+.++....+.. .+..... .+. -++ .|++....++ ..++|.+|+.+...+.+...... ..
T Consensus 214 ~~i~v~d~~~g~~~~~~~---~~~~~~~--~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~---~~ 281 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS---FPGMNGA--PAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGI---DT 281 (417)
T ss_pred cEEEEEECCCCCEEEeec---CCCCccc--eEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCC---CC
Confidence 589999999987766552 2221111 222 234 4555433222 25799999998888777532111 11
Q ss_pred eeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEE-ECCEEEEEcCCCCCCCcCeEEE
Q 005493 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLI 329 (694)
Q Consensus 251 ~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~-~~~~iyV~GG~~~~~~~~~v~~ 329 (694)
.. ...-+++.|++...... ..++|++|+.+..+..+...+ ......+. -+++.+++..... ....++.
T Consensus 282 ~~-~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~--~~~~i~~ 350 (417)
T TIGR02800 282 EP-SWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG--GGFNIAV 350 (417)
T ss_pred CE-EECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccC--CceEEEE
Confidence 11 11124453444433222 247999999998888775431 22222222 2455555554332 2347999
Q ss_pred EECCCCcEEEee
Q 005493 330 FDILKGEWSVAI 341 (694)
Q Consensus 330 yd~~t~~W~~l~ 341 (694)
+|+.+..+..+.
T Consensus 351 ~d~~~~~~~~l~ 362 (417)
T TIGR02800 351 MDLDGGGERVLT 362 (417)
T ss_pred EeCCCCCeEEcc
Confidence 999987776654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=9.5 Score=42.67 Aligned_cols=146 Identities=16% Similarity=0.171 Sum_probs=79.7
Q ss_pred ccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECC-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcc
Q 005493 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (694)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~ 250 (694)
...+|++|+.+++...+.. .+.. .......-++ +|++....++ ..++|++|+.+...+.+... +..
T Consensus 227 ~~~l~~~dl~~g~~~~l~~---~~g~-~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~---~~~-- 293 (433)
T PRK04922 227 RSAIYVQDLATGQRELVAS---FRGI-NGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNH---FGI-- 293 (433)
T ss_pred CcEEEEEECCCCCEEEecc---CCCC-ccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccC---CCC--
Confidence 3579999999988776652 2211 1111112234 4544432222 25799999999887776521 111
Q ss_pred eeEEEEE-CCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEE--ECCEEEEEcCCCCCCCcCeE
Q 005493 251 NHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL--CGTKWYIAGGGSRKKRHAET 327 (694)
Q Consensus 251 ~hs~~~~-~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~--~~~~iyV~GG~~~~~~~~~v 327 (694)
....+.. +++.|++.....+ ..++|.+|+.++.++.+...+ ........ .++.|++..+..+ ...+
T Consensus 294 ~~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~~~---~~~I 362 (433)
T PRK04922 294 DTEPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGSGG---QYRI 362 (433)
T ss_pred ccceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECCCC---ceeE
Confidence 1112233 3443443332222 257999999998888876431 12222222 2456666544221 2368
Q ss_pred EEEECCCCcEEEee
Q 005493 328 LIFDILKGEWSVAI 341 (694)
Q Consensus 328 ~~yd~~t~~W~~l~ 341 (694)
+++|+.+..+..+.
T Consensus 363 ~v~d~~~g~~~~Lt 376 (433)
T PRK04922 363 AVMDLSTGSVRTLT 376 (433)
T ss_pred EEEECCCCCeEECC
Confidence 99999988887654
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.57 E-value=7.6 Score=41.30 Aligned_cols=242 Identities=16% Similarity=0.178 Sum_probs=109.5
Q ss_pred CCCceEEeeccCCCCCCccceEEEEE-CCEEEEEcCCCCCCCcCcEEEEECC--CCcEEEcccccccCCCCCCCCCC-Cc
Q 005493 72 NSENWMVLSIAGDKPIPRFNHAAAVI-GNKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIP-AC 147 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~~R~~hs~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~p~~~~~~~p-~r 147 (694)
....|+.+. .|....-..+.++ .+.-|++|-.. .+|-.. -.+|...... ...+ ..
T Consensus 4 ~~~~W~~v~----l~t~~~l~dV~F~d~~~G~~VG~~g--------~il~T~DGG~tW~~~~~~---------~~~~~~~ 62 (302)
T PF14870_consen 4 SGNSWQQVS----LPTDKPLLDVAFVDPNHGWAVGAYG--------TILKTTDGGKTWQPVSLD---------LDNPFDY 62 (302)
T ss_dssp SS--EEEEE-----S-SS-EEEEEESSSS-EEEEETTT--------EEEEESSTTSS-EE--------------S-----
T ss_pred cCCCcEEee----cCCCCceEEEEEecCCEEEEEecCC--------EEEEECCCCccccccccC---------CCcccee
Confidence 567899996 4444445555555 46688887421 233332 3589988742 1122 22
Q ss_pred cceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEE-ECCeEEEEccccCCCccccce
Q 005493 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDL 226 (694)
Q Consensus 148 ~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v 226 (694)
...++...++..|+.|... -++.-.-.-.+|+.++....+|- ..+.+.. -++.++++|.. ..+
T Consensus 63 ~l~~I~f~~~~g~ivG~~g-------~ll~T~DgG~tW~~v~l~~~lpg--s~~~i~~l~~~~~~l~~~~-------G~i 126 (302)
T PF14870_consen 63 HLNSISFDGNEGWIVGEPG-------LLLHTTDGGKTWERVPLSSKLPG--SPFGITALGDGSAELAGDR-------GAI 126 (302)
T ss_dssp EEEEEEEETTEEEEEEETT-------EEEEESSTTSS-EE----TT-SS---EEEEEEEETTEEEEEETT---------E
T ss_pred eEEEEEecCCceEEEcCCc-------eEEEecCCCCCcEEeecCCCCCC--CeeEEEEcCCCcEEEEcCC-------CcE
Confidence 3344555678899886431 34554445688999874323332 3333333 45677777532 345
Q ss_pred EEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEE
Q 005493 227 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 306 (694)
Q Consensus 227 ~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav 306 (694)
|+=.-.-.+|+.+.. +..-.-..+....+..+++++.... -+...|+-...|...... ..|.-.++.
T Consensus 127 y~T~DgG~tW~~~~~----~~~gs~~~~~r~~dG~~vavs~~G~-----~~~s~~~G~~~w~~~~r~----~~~riq~~g 193 (302)
T PF14870_consen 127 YRTTDGGKTWQAVVS----ETSGSINDITRSSDGRYVAVSSRGN-----FYSSWDPGQTTWQPHNRN----SSRRIQSMG 193 (302)
T ss_dssp EEESSTTSSEEEEE-----S----EEEEEE-TTS-EEEEETTSS-----EEEEE-TT-SS-EEEE------SSS-EEEEE
T ss_pred EEeCCCCCCeeEccc----CCcceeEeEEECCCCcEEEEECccc-----EEEEecCCCccceEEccC----ccceehhce
Confidence 555545678998752 1112222334445554555554332 133567777889998763 445555555
Q ss_pred EE-CCEEEEEcCCCCCCCcCeEEEEE--CCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCC
Q 005493 307 LC-GTKWYIAGGGSRKKRHAETLIFD--ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (694)
Q Consensus 307 ~~-~~~iyV~GG~~~~~~~~~v~~yd--~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~ 374 (694)
.. ++.++++. ..+ .++.-+ -...+|.+.. .|....++...-+.....+.+++.||..
T Consensus 194 f~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~-----~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 194 FSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPI-----IPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp E-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B------TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ecCCCCEEEEe-CCc-----EEEEccCCCCcccccccc-----CCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 54 56777765 222 244444 3446787732 1223344444444444557899999985
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.33 E-value=2.9 Score=46.00 Aligned_cols=215 Identities=19% Similarity=0.249 Sum_probs=112.4
Q ss_pred CCEEEEEcCCCCCCCcCcEEEEECCCCc-EEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEE
Q 005493 98 GNKMIVVGGESGNGLLDDVQVLNFDRFS-WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVW 176 (694)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~ 176 (694)
+++|+..|+..+ -+.+||..+.. -+.+.. ...| ...--.+..++.++++|+-+ ..+-
T Consensus 79 DG~LlaaGD~sG-----~V~vfD~k~r~iLR~~~a----------h~ap-v~~~~f~~~d~t~l~s~sDd------~v~k 136 (487)
T KOG0310|consen 79 DGRLLAAGDESG-----HVKVFDMKSRVILRQLYA----------HQAP-VHVTKFSPQDNTMLVSGSDD------KVVK 136 (487)
T ss_pred CCeEEEccCCcC-----cEEEeccccHHHHHHHhh----------ccCc-eeEEEecccCCeEEEecCCC------ceEE
Confidence 688999998664 47889955521 111111 0111 11122345688999998743 1455
Q ss_pred EEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCC-cEEEcccCCCCCCCcceeEEE
Q 005493 177 TFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL-TWLPLHCTGTGPSPRSNHVAA 255 (694)
Q Consensus 177 ~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~-~W~~l~~~g~~P~~R~~hs~~ 255 (694)
.+|..+..- .....+.--.-|++ ++...++.|++-||+++. +-.||+.+. .|.. +..-..|.. .++
T Consensus 137 ~~d~s~a~v-~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg~------vrl~DtR~~~~~v~-elnhg~pVe----~vl 203 (487)
T KOG0310|consen 137 YWDLSTAYV-QAELSGHTDYVRCG-DISPANDHIVVTGSYDGK------VRLWDTRSLTSRVV-ELNHGCPVE----SVL 203 (487)
T ss_pred EEEcCCcEE-EEEecCCcceeEee-ccccCCCeEEEecCCCce------EEEEEeccCCceeE-EecCCCcee----eEE
Confidence 556665553 33333332333433 333457889999999865 566777666 4432 111122221 345
Q ss_pred EECC-cEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcce-----EEEEE-CCEEEEEcCCCCCCCcCeEE
Q 005493 256 LYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGC-----CGVLC-GTKWYIAGGGSRKKRHAETL 328 (694)
Q Consensus 256 ~~~~-~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~-----sav~~-~~~iyV~GG~~~~~~~~~v~ 328 (694)
.+.+ ..|...|| |.+-++|+.++.=. +..+..| |.... ++.-++-||.++. +-
T Consensus 204 ~lpsgs~iasAgG-------n~vkVWDl~~G~ql--------l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~-----VK 263 (487)
T KOG0310|consen 204 ALPSGSLIASAGG-------NSVKVWDLTTGGQL--------LTSMFNHNKTVTCLRLASDSTRLLSGSLDRH-----VK 263 (487)
T ss_pred EcCCCCEEEEcCC-------CeEEEEEecCCcee--------hhhhhcccceEEEEEeecCCceEeecccccc-----eE
Confidence 5555 44556666 45788888754311 1122212 22222 4567778887765 77
Q ss_pred EEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCC
Q 005493 329 IFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE 376 (694)
Q Consensus 329 ~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~ 376 (694)
+||+. .|+.+- ....|.+. .++.+.. .+.-+++|+.++-
T Consensus 264 Vfd~t--~~Kvv~--s~~~~~pv--Lsiavs~---dd~t~viGmsnGl 302 (487)
T KOG0310|consen 264 VFDTT--NYKVVH--SWKYPGPV--LSIAVSP---DDQTVVIGMSNGL 302 (487)
T ss_pred EEEcc--ceEEEE--eeecccce--eeEEecC---CCceEEEecccce
Confidence 89844 466554 22222222 2222222 3456677777654
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=94.31 E-value=4.1 Score=42.11 Aligned_cols=194 Identities=15% Similarity=0.130 Sum_probs=102.6
Q ss_pred CCEEEEEccccCCCCCccEEEEEECC-----CCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEee
Q 005493 156 GKKVLLVGGKTDSGSDRVSVWTFDTE-----TECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFD 230 (694)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yd~~-----t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd 230 (694)
.+++|++.|.... .++.|... .+.+...- .+|.+-.+.+.+++++.+|..-. ..+.|.+||
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~------~s~~Ivkyd 95 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYD 95 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEec------CCceEEEEE
Confidence 5688998876432 66666432 22233222 36777777788889999888743 357899999
Q ss_pred CCCCcEE---EcccCCC---CCCCcce---eEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCc
Q 005493 231 LKSLTWL---PLHCTGT---GPSPRSN---HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRA 301 (694)
Q Consensus 231 ~~t~~W~---~l~~~g~---~P~~R~~---hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~ 301 (694)
+.++.-. .++..+. .|....+ .-.++-.+. |+|+=......-.--|-++|+.+..-...-... .+.+..
T Consensus 96 L~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-LWvIYat~~~~g~ivvskld~~tL~v~~tw~T~-~~k~~~ 173 (250)
T PF02191_consen 96 LTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG-LWVIYATEDNNGNIVVSKLDPETLSVEQTWNTS-YPKRSA 173 (250)
T ss_pred CcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC-EEEEEecCCCCCcEEEEeeCcccCceEEEEEec-cCchhh
Confidence 9988755 3321111 1111111 223333445 555433322211123556677654322222211 233333
Q ss_pred ceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEc
Q 005493 302 GCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFG 371 (694)
Q Consensus 302 ~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~G 371 (694)
+ .+.++-|.+|++...+... ..=.+.||+.+++=..+.. ..+.....++++-..+.+ ..||+.-
T Consensus 174 ~-naFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i---~f~~~~~~~~~l~YNP~d-k~LY~wd 237 (250)
T PF02191_consen 174 G-NAFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSI---PFPNPYGNISMLSYNPRD-KKLYAWD 237 (250)
T ss_pred c-ceeeEeeEEEEEEECCCCC-cEEEEEEECCCCceeceee---eeccccCceEeeeECCCC-CeEEEEE
Confidence 3 3455568899988876543 2224799999887654332 222333345554444433 4677653
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=9.2 Score=40.78 Aligned_cols=240 Identities=11% Similarity=0.095 Sum_probs=106.9
Q ss_pred EEEEEcCCCCCCCcCcEEEEECCC-CcEEEcccccccCCCCCCCCCCCccceEEEE--ECCEEEEEccccCCCCCccEEE
Q 005493 100 KMIVVGGESGNGLLDDVQVLNFDR-FSWTAASSKLYLSPSSLPLKIPACRGHSLIS--WGKKVLLVGGKTDSGSDRVSVW 176 (694)
Q Consensus 100 ~lyv~GG~~~~~~~~~v~~yd~~t-~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~--~~~~Iyv~GG~~~~~~~~~~v~ 176 (694)
.+|+..+.. +.+.+||..+ ..++.+... +... ..+.++. .++.+|+.+. . ...+.
T Consensus 3 ~~y~~~~~~-----~~I~~~~~~~~g~l~~~~~~----------~~~~-~~~~l~~spd~~~lyv~~~-~-----~~~i~ 60 (330)
T PRK11028 3 IVYIASPES-----QQIHVWNLNHEGALTLLQVV----------DVPG-QVQPMVISPDKRHLYVGVR-P-----EFRVL 60 (330)
T ss_pred EEEEEcCCC-----CCEEEEEECCCCceeeeeEE----------ecCC-CCccEEECCCCCEEEEEEC-C-----CCcEE
Confidence 467775432 5677888754 567665541 1111 1112222 2345666432 1 13566
Q ss_pred EEECC-CCcEEEeeecCCCCCcceeeEEEE-ECC-eEEEEccccCCCccccceEEeeCCCCc--EEEcccCCCCCCCcce
Q 005493 177 TFDTE-TECWSVVEAKGDIPVARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPRSN 251 (694)
Q Consensus 177 ~yd~~-t~~W~~~~~~g~~p~~R~~~~~~~-~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~l~~~g~~P~~R~~ 251 (694)
.|++. ++++..+.. .+.+-..+.++. -++ .+|+.. +. .+.+.+|++.++. ...+. ..+....-
T Consensus 61 ~~~~~~~g~l~~~~~---~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~---~~~~~~~~ 128 (330)
T PRK11028 61 SYRIADDGALTFAAE---SPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQ---IIEGLEGC 128 (330)
T ss_pred EEEECCCCceEEeee---ecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCcee---eccCCCcc
Confidence 66664 566765542 222111122333 234 455543 22 2567778775432 11121 12222233
Q ss_pred eEEEEEC-CcEEEEEcCCCCCCCCCeEEEEEcCCC-cEEEeecc-CCCCCCCcceEEEEE--CCEEEEEcCCCCCCCcCe
Q 005493 252 HVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETM-IWTRIKIR-GFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAE 326 (694)
Q Consensus 252 hs~~~~~-~~~lyv~GG~~~~~~~~dv~~yd~~t~-~W~~l~~~-~~~p~~R~~~sav~~--~~~iyV~GG~~~~~~~~~ 326 (694)
|.+++.. ++.+|+..-. .+.|.+||+.+. ........ ...+.+..-+.++.. +..+|+.-... +.
T Consensus 129 ~~~~~~p~g~~l~v~~~~-----~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~-----~~ 198 (330)
T PRK11028 129 HSANIDPDNRTLWVPCLK-----EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN-----SS 198 (330)
T ss_pred cEeEeCCCCCEEEEeeCC-----CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC-----CE
Confidence 5555553 4456654322 246999998763 22211000 001111111122332 34677764432 35
Q ss_pred EEEEECC--CCcEEEeec---CCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccC
Q 005493 327 TLIFDIL--KGEWSVAIT---SPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (694)
Q Consensus 327 v~~yd~~--t~~W~~l~~---~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~ 389 (694)
+.+||++ +.+++.+.. .|...+.++ +.+.+.-++++.++|+... ..+.+-+|++..+
T Consensus 199 v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~i~~~pdg~~lyv~~~----~~~~I~v~~i~~~ 260 (330)
T PRK11028 199 VDVWQLKDPHGEIECVQTLDMMPADFSDTR--WAADIHITPDGRHLYACDR----TASLISVFSVSED 260 (330)
T ss_pred EEEEEEeCCCCCEEEEEEEecCCCcCCCCc--cceeEEECCCCCEEEEecC----CCCeEEEEEEeCC
Confidence 7777776 345443322 222212222 3332332345557877522 2346777777544
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=11 Score=41.84 Aligned_cols=145 Identities=12% Similarity=0.100 Sum_probs=79.6
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceeeEEEEE-CC-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcc
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~ 250 (694)
..+|++|+.+++-+.+.. .+. ........ ++ +|++..-.++ ..++|++|+.+..++.+.. .+. ..
T Consensus 223 ~~l~~~~l~~g~~~~l~~---~~g--~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~---~~~-~~ 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQITN---FEG--LNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTN---HPA-ID 289 (430)
T ss_pred CEEEEEECCCCCEEEccC---CCC--CcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEccc---CCC-Cc
Confidence 489999999988777652 111 11112222 34 4443322221 2579999999999887752 111 11
Q ss_pred eeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEE--ECCEEEEEcCCCCCCCcCeEE
Q 005493 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL--CGTKWYIAGGGSRKKRHAETL 328 (694)
Q Consensus 251 ~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~--~~~~iyV~GG~~~~~~~~~v~ 328 (694)
......-+++.|++..... ...++|++|+.++.++.+...+ ........ .++.|++.....+ ...++
T Consensus 290 ~~~~~spDg~~i~f~s~~~---g~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~~~---~~~l~ 358 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRG---GKPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVHRQDG---NFHVA 358 (430)
T ss_pred CCeEECCCCCEEEEEECCC---CCceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEEccCC---ceEEE
Confidence 1111122444344443222 1357999999999988875421 11111121 2455655543222 23699
Q ss_pred EEECCCCcEEEee
Q 005493 329 IFDILKGEWSVAI 341 (694)
Q Consensus 329 ~yd~~t~~W~~l~ 341 (694)
++|+.+..++.+.
T Consensus 359 ~~dl~tg~~~~lt 371 (430)
T PRK00178 359 AQDLQRGSVRILT 371 (430)
T ss_pred EEECCCCCEEEcc
Confidence 9999998887764
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=94.14 E-value=12 Score=43.13 Aligned_cols=221 Identities=13% Similarity=0.077 Sum_probs=111.1
Q ss_pred eEEEEECCEEEEEcCCCCCCCcCcEEEEECCCC--cEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCC
Q 005493 92 HAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRF--SWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSG 169 (694)
Q Consensus 92 hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~ 169 (694)
.+-+++++.||+... ...++++|..++ .|+.-........ +.........+.+..+++||+...
T Consensus 63 stPvv~~g~vyv~s~------~g~v~AlDa~TGk~lW~~~~~~~~~~~---~~~~~~~~~rg~av~~~~v~v~t~----- 128 (527)
T TIGR03075 63 SQPLVVDGVMYVTTS------YSRVYALDAKTGKELWKYDPKLPDDVI---PVMCCDVVNRGVALYDGKVFFGTL----- 128 (527)
T ss_pred cCCEEECCEEEEECC------CCcEEEEECCCCceeeEecCCCCcccc---cccccccccccceEECCEEEEEcC-----
Confidence 345567888998654 236899999885 6886543100000 000000011234556788886432
Q ss_pred CCccEEEEEECCCCc--EEEeeecCCCCCc-ceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCc--EEEcccCCC
Q 005493 170 SDRVSVWTFDTETEC--WSVVEAKGDIPVA-RSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGT 244 (694)
Q Consensus 170 ~~~~~v~~yd~~t~~--W~~~~~~g~~p~~-R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~l~~~g~ 244 (694)
...++++|..|++ |+.-.. +.... ....+-++.++.+|+-..... ......++.||.++.+ |+.-...+.
T Consensus 129 --dg~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~~~p~~ 203 (527)
T TIGR03075 129 --DARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRYTVPGD 203 (527)
T ss_pred --CCEEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECCCCceeEeccCcCCC
Confidence 1379999998876 764321 11111 122234456777766432111 1134578999998875 764432111
Q ss_pred C-------------C------C---CcceeE---EEEEC--CcEEEEEcCC----C------CCCCCCeEEEEEcCCCc-
Q 005493 245 G-------------P------S---PRSNHV---AALYD--DKNLLIFGGS----S------KSKTLNDLYSLDFETMI- 286 (694)
Q Consensus 245 ~-------------P------~---~R~~hs---~~~~~--~~~lyv~GG~----~------~~~~~~dv~~yd~~t~~- 286 (694)
. | . .+.+.. ...++ ...+|+-=|. . ...+.+.+..+|++|++
T Consensus 204 ~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~ 283 (527)
T TIGR03075 204 MGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKI 283 (527)
T ss_pred cccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCE
Confidence 0 0 0 011111 11333 2345553332 1 12356789999999864
Q ss_pred -EEEeeccCCCCCCCc--ceEEEE--ECCE---EEEEcCCCCCCCcCeEEEEECCCCc
Q 005493 287 -WTRIKIRGFHPSPRA--GCCGVL--CGTK---WYIAGGGSRKKRHAETLIFDILKGE 336 (694)
Q Consensus 287 -W~~l~~~~~~p~~R~--~~sav~--~~~~---iyV~GG~~~~~~~~~v~~yd~~t~~ 336 (694)
|.-.....+...-=. ....+- .+++ +++.+.-++ .+|++|..+.+
T Consensus 284 ~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G-----~~~vlDr~tG~ 336 (527)
T TIGR03075 284 KWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNG-----FFYVLDRTNGK 336 (527)
T ss_pred EEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCc-----eEEEEECCCCc
Confidence 776654322211111 112221 2443 676776554 48888888764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=94.08 E-value=9.6 Score=40.54 Aligned_cols=245 Identities=16% Similarity=0.206 Sum_probs=105.3
Q ss_pred CCCceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceE
Q 005493 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHS 151 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s 151 (694)
--.+|+.+....+.+......++...++..||+|-.. -++.-.-...+|..++.. .+.|......
T Consensus 45 GG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g------~ll~T~DgG~tW~~v~l~---------~~lpgs~~~i 109 (302)
T PF14870_consen 45 GGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG------LLLHTTDGGKTWERVPLS---------SKLPGSPFGI 109 (302)
T ss_dssp TTSS-EE-----S-----EEEEEEEETTEEEEEEETT------EEEEESSTTSS-EE-------------TT-SS-EEEE
T ss_pred CCccccccccCCCccceeeEEEEEecCCceEEEcCCc------eEEEecCCCCCcEEeecC---------CCCCCCeeEE
Confidence 5678998864222221223344555688899987421 122222234699998741 1233322223
Q ss_pred EEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEE-CCeEEEEccccCCCccccceE-Ee
Q 005493 152 LISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLH-MF 229 (694)
Q Consensus 152 ~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~-~y 229 (694)
.+.-++.++++|.. ..+|+-.-.-.+|+.+.. +..-.-..+... ++.+++++.. ..++ ..
T Consensus 110 ~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~----~~~gs~~~~~r~~dG~~vavs~~-------G~~~~s~ 171 (302)
T PF14870_consen 110 TALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVS----ETSGSINDITRSSDGRYVAVSSR-------GNFYSSW 171 (302)
T ss_dssp EEEETTEEEEEETT---------EEEESSTTSSEEEEE-----S----EEEEEE-TTS-EEEEETT-------SSEEEEE
T ss_pred EEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEccc----CCcceeEeEEECCCCcEEEEECc-------ccEEEEe
Confidence 33345677777643 257776666789998763 111122223333 4566666532 2233 45
Q ss_pred eCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEE--cCCCcEEEeeccCCCCCCCcceE-EE
Q 005493 230 DLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLD--FETMIWTRIKIRGFHPSPRAGCC-GV 306 (694)
Q Consensus 230 d~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd--~~t~~W~~l~~~~~~p~~R~~~s-av 306 (694)
|+-...|.... .+..|.--+|....+..+++.. ..+ .++.=+ ....+|.+.... .+....++- ++
T Consensus 172 ~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~~~--~~~~~~~~ld~a 239 (302)
T PF14870_consen 172 DPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPIIP--IKTNGYGILDLA 239 (302)
T ss_dssp -TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B-T--TSS--S-EEEEE
T ss_pred cCCCccceEEc----cCccceehhceecCCCCEEEEe-CCc-----EEEEccCCCCccccccccCC--cccCceeeEEEE
Confidence 77777899884 5566777777777776576654 222 244444 345677773321 112233222 33
Q ss_pred EE-CCEEEEEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCC
Q 005493 307 LC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 373 (694)
Q Consensus 307 ~~-~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~ 373 (694)
.. ++.+++.||... +++=.-.-++|++..... ..+..-+..+.+. .+.-+|+|..
T Consensus 240 ~~~~~~~wa~gg~G~------l~~S~DgGktW~~~~~~~---~~~~n~~~i~f~~---~~~gf~lG~~ 295 (302)
T PF14870_consen 240 YRPPNEIWAVGGSGT------LLVSTDGGKTWQKDRVGE---NVPSNLYRIVFVN---PDKGFVLGQD 295 (302)
T ss_dssp ESSSS-EEEEESTT-------EEEESSTTSS-EE-GGGT---TSSS---EEEEEE---TTEEEEE-ST
T ss_pred ecCCCCEEEEeCCcc------EEEeCCCCccceECcccc---CCCCceEEEEEcC---CCceEEECCC
Confidence 33 588999988542 333334457899875321 1122234444443 2466777764
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=93.81 E-value=16 Score=42.14 Aligned_cols=216 Identities=15% Similarity=0.160 Sum_probs=109.5
Q ss_pred EEECCEEEEEccccCCCCCccEEEEEECCCCc--EEEeeecC-CC-C---CcceeeEEEEECCeEEEEccccCCCccccc
Q 005493 153 ISWGKKVLLVGGKTDSGSDRVSVWTFDTETEC--WSVVEAKG-DI-P---VARSGHTVVRASSVLILFGGEDGKRRKLND 225 (694)
Q Consensus 153 v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~g-~~-p---~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~ 225 (694)
++.++.||+.... ..|+.+|..+++ |+.-.... .. + ........++.++++|+.. .-..
T Consensus 66 vv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-------~dg~ 131 (527)
T TIGR03075 66 LVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-------LDAR 131 (527)
T ss_pred EEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-------CCCE
Confidence 4568999986442 268999988764 87543110 01 0 0011223456677877642 1246
Q ss_pred eEEeeCCCCc--EEEcccCCCCCCC-cceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCc--EEEeeccCCC----
Q 005493 226 LHMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFH---- 296 (694)
Q Consensus 226 v~~yd~~t~~--W~~l~~~g~~P~~-R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~--W~~l~~~~~~---- 296 (694)
++.+|..+.+ |+.-. +..... ....+-++.++. +|+-...........|+.||.++++ |+.-...+..
T Consensus 132 l~ALDa~TGk~~W~~~~--~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~ 208 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKN--GDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLD 208 (527)
T ss_pred EEEEECCCCCEEeeccc--ccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccc
Confidence 8999998875 87532 122111 111233445555 5553221122234579999998764 7654332110
Q ss_pred ---------C---------CCCcc----eEEEEE--CCEEEEEcCC----CC------CCCcCeEEEEECCCCc--EEEe
Q 005493 297 ---------P---------SPRAG----CCGVLC--GTKWYIAGGG----SR------KKRHAETLIFDILKGE--WSVA 340 (694)
Q Consensus 297 ---------p---------~~R~~----~sav~~--~~~iyV~GG~----~~------~~~~~~v~~yd~~t~~--W~~l 340 (694)
| ..+.+ ...++. .+.||+--|. .. +.+.+.+..+|++|.+ |..-
T Consensus 209 ~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q 288 (527)
T TIGR03075 209 KADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQ 288 (527)
T ss_pred ccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeee
Confidence 0 00111 111222 3467765554 11 2235689999999874 7643
Q ss_pred ecCCCCCCCCCcCcEEEEEee--cCC-cEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 341 ITSPSSSVTSNKGFTLVLVQH--KEK-DFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 341 ~~~~~~~p~~r~~~s~~~v~~--~~~-~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
. .+...-..-.....+++.. .++ ..+++.+..++ .++++|..+.+
T Consensus 289 ~-~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G----~~~vlDr~tG~ 336 (527)
T TIGR03075 289 T-TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNG----FFYVLDRTNGK 336 (527)
T ss_pred C-CCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCc----eEEEEECCCCc
Confidence 2 2222222222233444443 222 24666666544 57888887765
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=93.78 E-value=12 Score=40.54 Aligned_cols=272 Identities=18% Similarity=0.213 Sum_probs=127.9
Q ss_pred CCCceEEeeccCCCCCCccceEEEEECCEEEEEcCCCCCCCcCcEEEE--ECCCCcEEEcccccccCCCCCCCCCCCccc
Q 005493 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVL--NFDRFSWTAASSKLYLSPSSLPLKIPACRG 149 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~~R~~hs~~~~~~~lyv~GG~~~~~~~~~v~~y--d~~t~~W~~~~~~~~~~p~~~~~~~p~r~~ 149 (694)
.+..++.+......+.|-+ -+...-++.||+..... .....+..| +..+.+.+.+... +... ..
T Consensus 23 ~~g~l~~~~~~~~~~~Ps~-l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~----------~~~g-~~ 88 (345)
T PF10282_consen 23 ETGTLTLVQTVAEGENPSW-LAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSV----------PSGG-SS 88 (345)
T ss_dssp TTTEEEEEEEEEESSSECC-EEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEE----------EESS-SC
T ss_pred CCCCceEeeeecCCCCCce-EEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeee----------ccCC-CC
Confidence 7788887753111121211 11111356788886543 122344444 5554677776652 1111 12
Q ss_pred eEEEEE---CCEEEEEccccCCCCCccEEEEEECCCC-cEEEee------ecCCC---CCcceeeEEEEEC--CeEEEEc
Q 005493 150 HSLISW---GKKVLLVGGKTDSGSDRVSVWTFDTETE-CWSVVE------AKGDI---PVARSGHTVVRAS--SVLILFG 214 (694)
Q Consensus 150 ~s~v~~---~~~Iyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~------~~g~~---p~~R~~~~~~~~~--~~lyv~G 214 (694)
.+.+.+ +..||+. -+. ...+.+|++..+ .-.... ..+.- ...-..|.+.... +.+|+..
T Consensus 89 p~~i~~~~~g~~l~va-ny~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVA-NYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp EEEEEECTTSSEEEEE-ETT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred cEEEEEecCCCEEEEE-Ecc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence 222333 3456654 221 236778877663 322221 01111 2234455655553 4566652
Q ss_pred cccCCCccccceEEeeCCCCc--EEEcccCCCCCCC-cceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcC--CCcEEE
Q 005493 215 GEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSP-RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFE--TMIWTR 289 (694)
Q Consensus 215 G~~~~~~~~~~v~~yd~~t~~--W~~l~~~g~~P~~-R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~--t~~W~~ 289 (694)
.-.+.+++|+..... ....... .+|.. --.|.+..-+++++||....+ +.|.+|+.. ++.|+.
T Consensus 163 ------lG~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v~~~~~~~g~~~~ 230 (345)
T PF10282_consen 163 ------LGADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVSVFDYDPSDGSLTE 230 (345)
T ss_dssp ------TTTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEE
T ss_pred ------cCCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCCC-----CcEEEEeecccCCceeE
Confidence 124678899887665 5442211 12221 112333222456789987654 456666665 777776
Q ss_pred eeccCCCCC---CCcceEEEEE---CCEEEEEcCCCCCCCcCeEEEEEC--CCCcEEEeecCCCCCCCCCcCcEEEEEee
Q 005493 290 IKIRGFHPS---PRAGCCGVLC---GTKWYIAGGGSRKKRHAETLIFDI--LKGEWSVAITSPSSSVTSNKGFTLVLVQH 361 (694)
Q Consensus 290 l~~~~~~p~---~R~~~sav~~---~~~iyV~GG~~~~~~~~~v~~yd~--~t~~W~~l~~~~~~~p~~r~~~s~~~v~~ 361 (694)
+......|. +....+.+.+ +..+|+.-.. .+.+.+|++ .+...+.+...+.. ...--...+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~~----G~~Pr~~~~s- 300 (345)
T PF10282_consen 231 IQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPTG----GKFPRHFAFS- 300 (345)
T ss_dssp EEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEES----SSSEEEEEE--
T ss_pred EEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeCC----CCCccEEEEe-
Confidence 654332332 2222333333 4567775543 345778877 44566655433321 1111122332
Q ss_pred cCCcEEEEEcCCCCCCCCcEEEEECccC
Q 005493 362 KEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (694)
Q Consensus 362 ~~~~~i~v~GG~~~~~~~~v~~~di~~~ 389 (694)
+++.+||+.+.. .+.|.+|+++.+
T Consensus 301 ~~g~~l~Va~~~----s~~v~vf~~d~~ 324 (345)
T PF10282_consen 301 PDGRYLYVANQD----SNTVSVFDIDPD 324 (345)
T ss_dssp TTSSEEEEEETT----TTEEEEEEEETT
T ss_pred CCCCEEEEEecC----CCeEEEEEEeCC
Confidence 344566664433 236888877544
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.76 E-value=9.8 Score=42.11 Aligned_cols=255 Identities=11% Similarity=0.040 Sum_probs=126.9
Q ss_pred CCEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEEC-CEEEEEccccCCCC-----C
Q 005493 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG-KKVLLVGGKTDSGS-----D 171 (694)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~-~~Iyv~GG~~~~~~-----~ 171 (694)
+++.++++=..+..-...+.++|+.++....-. ++...+.+++..+ ++.+++........ .
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-------------i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-------------IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-------------EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-------------ccccccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 344455443222333456899999998443322 1122222244433 34555544433222 2
Q ss_pred ccEEEEEECCCCcEE--EeeecCCCCCcc--eeeEEEEECCeEEEEccccCCCccccceEEeeCCCC-----cEEEcccC
Q 005493 172 RVSVWTFDTETECWS--VVEAKGDIPVAR--SGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL-----TWLPLHCT 242 (694)
Q Consensus 172 ~~~v~~yd~~t~~W~--~~~~~g~~p~~R--~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~-----~W~~l~~~ 242 (694)
...||++.+.+..-. .+- ..+... +......-+++.+++.-.... . .+++|.+|.... .|..+..
T Consensus 201 ~~~v~~~~~gt~~~~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~~-~-~s~v~~~d~~~~~~~~~~~~~l~~- 274 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSGT-S-ESEVYLLDLDDGGSPDAKPKLLSP- 274 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESSS-S-EEEEEEEECCCTTTSS-SEEEEEE-
T ss_pred CcEEEEEECCCChHhCeeEE---eecCCCcEEEEEEecCcccEEEEEEEccc-c-CCeEEEEeccccCCCcCCcEEEeC-
Confidence 568999999887643 222 122222 222222334454444333222 1 478999999875 7888852
Q ss_pred CCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCc---EEEeeccCCCCCC-CcceEEEEECCEEEEEcCC
Q 005493 243 GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI---WTRIKIRGFHPSP-RAGCCGVLCGTKWYIAGGG 318 (694)
Q Consensus 243 g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~---W~~l~~~~~~p~~-R~~~sav~~~~~iyV~GG~ 318 (694)
+..-..+.+...++. +||.-.. ......|..+++.... |..+-.. +.. ..--.+...++.+++.-=.
T Consensus 275 ---~~~~~~~~v~~~~~~-~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l~~~~~~~~~Lvl~~~~ 345 (414)
T PF02897_consen 275 ---REDGVEYYVDHHGDR-LYILTND--DAPNGRLVAVDLADPSPAEWWTVLIP---EDEDVSLEDVSLFKDYLVLSYRE 345 (414)
T ss_dssp ---SSSS-EEEEEEETTE-EEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEE
T ss_pred ---CCCceEEEEEccCCE-EEEeeCC--CCCCcEEEEecccccccccceeEEcC---CCCceeEEEEEEECCEEEEEEEE
Confidence 122222233344555 7776553 2234578999998765 7743321 222 2334444568888776543
Q ss_pred CCCCCcCeEEEEECC-CCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCCc
Q 005493 319 SRKKRHAETLIFDIL-KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNES 391 (694)
Q Consensus 319 ~~~~~~~~v~~yd~~-t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~w 391 (694)
+. ...+.+||+. ...-..++. | .....+.......+....|.+.+...- ..++.||+.+++.
T Consensus 346 ~~---~~~l~v~~~~~~~~~~~~~~-----p-~~g~v~~~~~~~~~~~~~~~~ss~~~P--~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 346 NG---SSRLRVYDLDDGKESREIPL-----P-EAGSVSGVSGDFDSDELRFSYSSFTTP--PTVYRYDLATGEL 408 (414)
T ss_dssp TT---EEEEEEEETT-TEEEEEEES-----S-SSSEEEEEES-TT-SEEEEEEEETTEE--EEEEEEETTTTCE
T ss_pred CC---ccEEEEEECCCCcEEeeecC-----C-cceEEeccCCCCCCCEEEEEEeCCCCC--CEEEEEECCCCCE
Confidence 33 2468999998 433333331 1 111112211112333445556676433 3789999988873
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=93.57 E-value=12 Score=41.28 Aligned_cols=148 Identities=14% Similarity=0.110 Sum_probs=76.5
Q ss_pred CcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEEC-CEEEEEccccCCCCCccEEEEEECCCCcEEEeeecC
Q 005493 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG-KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (694)
Q Consensus 114 ~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~-~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 192 (694)
..++++|+.++....+... +.........-+ +.|++..... ...++|.+|+.+.....+....
T Consensus 214 ~~i~v~d~~~g~~~~~~~~------------~~~~~~~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~~~~~l~~~~ 277 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASF------------PGMNGAPAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQLTRLTNGP 277 (417)
T ss_pred cEEEEEECCCCCEEEeecC------------CCCccceEECCCCCEEEEEECCC----CCccEEEEECCCCCEEECCCCC
Confidence 3577888877765554431 111111112223 4566553321 2247999999998877765311
Q ss_pred CCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEE-CCcEEEEEcCCCCC
Q 005493 193 DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKS 271 (694)
Q Consensus 193 ~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~~lyv~GG~~~~ 271 (694)
... .. ....-+++.+++...... ...+|++|+.+..+..+...+ .+....+.. +++ .+++.....
T Consensus 278 ~~~---~~-~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~-~i~~~~~~~- 343 (417)
T TIGR02800 278 GID---TE-PSWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGD-LIAFVHREG- 343 (417)
T ss_pred CCC---CC-EEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCC-EEEEEEccC-
Confidence 111 01 111124444434322211 247999999988888775322 122222333 345 444444322
Q ss_pred CCCCeEEEEEcCCCcEEEeec
Q 005493 272 KTLNDLYSLDFETMIWTRIKI 292 (694)
Q Consensus 272 ~~~~dv~~yd~~t~~W~~l~~ 292 (694)
....++.+|+.++.++.+..
T Consensus 344 -~~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 344 -GGFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred -CceEEEEEeCCCCCeEEccC
Confidence 23479999999877776643
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.11 Score=51.57 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=51.7
Q ss_pred hhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccc
Q 005493 568 YQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNI 647 (694)
Q Consensus 568 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~ 647 (694)
.-....+++.+.+.++.|.+||-.+...++..++.++.. +..++....+...|++|+..++.+-+|-+..-.+
T Consensus 76 ~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~-------~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~ 148 (194)
T PF08614_consen 76 LAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEK-------ERRLAELEAELAQLEEKIKDLEEELKEKNKANEI 148 (194)
T ss_dssp --------------------------------------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccchhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999999999999999999988776 5555555566666666666666666666677777
Q ss_pred cccCCccchhhHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 005493 648 VHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEF 684 (694)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (694)
+.++-+-|--.+.-|...+..+|+|....=+-+|...
T Consensus 149 l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 149 LQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777777888899999999999877666555443
|
In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=19 Score=40.32 Aligned_cols=188 Identities=8% Similarity=-0.004 Sum_probs=92.4
Q ss_pred ccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcce
Q 005493 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (694)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~ 251 (694)
...+|..|.....=+.+... ... ..+....-+++.+++...... ...+|++|+.+.....+. ..+.....
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~---~~~-v~~p~wSpDG~~lay~s~~~g---~~~i~~~dl~~g~~~~l~---~~~g~~~~ 250 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDG---SSL-VLTPRFSPNRQEITYMSYANG---RPRVYLLDLETGQRELVG---NFPGMTFA 250 (435)
T ss_pred ceEEEEECCCCCCcEEEecC---CCC-eEeeEECCCCCEEEEEEecCC---CCEEEEEECCCCcEEEee---cCCCcccC
Confidence 55899999866544444321 111 111111124444444433222 267999999998887775 23322221
Q ss_pred eEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEEC-CEEEEEcCCCCCCCcCeEEEE
Q 005493 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWYIAGGGSRKKRHAETLIF 330 (694)
Q Consensus 252 hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~-~~iyV~GG~~~~~~~~~v~~y 330 (694)
.. ..-+++.|++....++ ..++|++|+.++....+... +. ........-+ ..|++.....+ ...+|++
T Consensus 251 ~~-~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~---~~-~~~~~~~spDG~~i~f~s~~~g---~~~Iy~~ 319 (435)
T PRK05137 251 PR-FSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDS---PA-IDTSPSYSPDGSQIVFESDRSG---SPQLYVM 319 (435)
T ss_pred cE-ECCCCCEEEEEEecCC---CceEEEEECCCCceEEccCC---CC-ccCceeEcCCCCEEEEEECCCC---CCeEEEE
Confidence 11 1223443444332222 35799999999888777543 11 1111111113 44544332222 2479999
Q ss_pred ECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 331 DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 331 d~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
|+.....+.+... ........+.+.+ ..|+......+ ...++++++....
T Consensus 320 d~~g~~~~~lt~~-------~~~~~~~~~SpdG-~~ia~~~~~~~--~~~i~~~d~~~~~ 369 (435)
T PRK05137 320 NADGSNPRRISFG-------GGRYSTPVWSPRG-DLIAFTKQGGG--QFSIGVMKPDGSG 369 (435)
T ss_pred ECCCCCeEEeecC-------CCcccCeEECCCC-CEEEEEEcCCC--ceEEEEEECCCCc
Confidence 9988777766421 1112223343333 35544432211 2478888875443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=19 Score=40.28 Aligned_cols=186 Identities=8% Similarity=0.082 Sum_probs=100.1
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECC-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcce
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~ 251 (694)
.++|++|+.+++=+.+.. .+ .........-++ +|++.-...+ ..++|.+|+.+..++++.. .+. ..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~---~~-g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~---~~~--~d 279 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIAS---SQ-GMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITN---YPG--ID 279 (419)
T ss_pred CEEEEEECCCCcEEEEec---CC-CcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEccc---CCC--cc
Confidence 389999999987777652 11 111111122234 5554433322 3689999999999998862 222 11
Q ss_pred eEEEEE-CCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCC---CcCeE
Q 005493 252 HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKK---RHAET 327 (694)
Q Consensus 252 hs~~~~-~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~---~~~~v 327 (694)
...... +++.|++.....+ ..++|++|+.++..+++...+ .........++.|.+........ ...++
T Consensus 280 ~~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g-----~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I 351 (419)
T PRK04043 280 VNGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHG-----KNNSSVSTYKNYIVYSSRETNNEFGKNTFNL 351 (419)
T ss_pred CccEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCC-----CcCceECCCCCEEEEEEcCCCcccCCCCcEE
Confidence 111222 3444555543322 358999999999988776432 12222222245554444322211 23589
Q ss_pred EEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 328 LIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 328 ~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
+++|+.+..++.+... . ... ...+.++++ .|+..... .....++.+++..+.
T Consensus 352 ~v~d~~~g~~~~LT~~------~-~~~-~p~~SPDG~-~I~f~~~~--~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 352 YLISTNSDYIRRLTAN------G-VNQ-FPRFSSDGG-SIMFIKYL--GNQSALGIIRLNYNK 403 (419)
T ss_pred EEEECCCCCeEECCCC------C-CcC-CeEECCCCC-EEEEEEcc--CCcEEEEEEecCCCe
Confidence 9999999998877531 1 111 123443333 44444332 223467777776654
|
|
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=92.55 E-value=8.8 Score=37.91 Aligned_cols=152 Identities=15% Similarity=0.212 Sum_probs=77.4
Q ss_pred EEEEECCEEEEEccccCCCCCccEEEEEECCCCcE--EEeeec-CCCCCcceeeEEEEEC-CeEEEEccccCCCccccce
Q 005493 151 SLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECW--SVVEAK-GDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDL 226 (694)
Q Consensus 151 s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~-g~~p~~R~~~~~~~~~-~~lyv~GG~~~~~~~~~~v 226 (694)
+++...+.+|+|-|. .+|+++...... ..+... ..+|. ...++..... +++|+|-| +..
T Consensus 11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg--------~~y 73 (194)
T cd00094 11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKG--------DKY 73 (194)
T ss_pred eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECC--------CEE
Confidence 344456999999663 688887652211 112110 11232 2222322223 78999955 357
Q ss_pred EEeeCCCCcEE---EcccCCCCCC-CcceeEEEEEC-CcEEEEEcCCCCCCCCCeEEEEEcCCCcEEE-----eec-cCC
Q 005493 227 HMFDLKSLTWL---PLHCTGTGPS-PRSNHVAALYD-DKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-----IKI-RGF 295 (694)
Q Consensus 227 ~~yd~~t~~W~---~l~~~g~~P~-~R~~hs~~~~~-~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~-----l~~-~~~ 295 (694)
|+|+..+..+. .+...+-.+. .... ++.... +..+|+|.| +..|+||...++... +.. -+.
T Consensus 74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iD-AA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g 145 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDLGFPPTVKQID-AALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPG 145 (194)
T ss_pred EEEcCcccccCCCcchhhcCCCCCCCCcc-EEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCC
Confidence 78876542221 1110011111 2222 333333 445999988 358899876554321 100 001
Q ss_pred CCCCCcceEEEEEC-CEEEEEcCCCCCCCcCeEEEEECCCCc
Q 005493 296 HPSPRAGCCGVLCG-TKWYIAGGGSRKKRHAETLIFDILKGE 336 (694)
Q Consensus 296 ~p~~R~~~sav~~~-~~iyV~GG~~~~~~~~~v~~yd~~t~~ 336 (694)
+| ..-.++.... +++|++-| +..|+||..+.+
T Consensus 146 ~p--~~idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 146 VP--DKVDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred cC--CCcceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 12 1123344444 89999988 358999998765
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.54 E-value=21 Score=39.94 Aligned_cols=146 Identities=16% Similarity=0.135 Sum_probs=77.0
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECC-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcce
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~ 251 (694)
..++.+|+.+++-+.+.. .+..-. .....-++ +|++.....+ ..++|.+|+.+...+++.. .+.. .
T Consensus 223 ~~i~i~dl~~G~~~~l~~---~~~~~~-~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~---~~~~--~ 289 (429)
T PRK03629 223 SALVIQTLANGAVRQVAS---FPRHNG-APAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTD---GRSN--N 289 (429)
T ss_pred cEEEEEECCCCCeEEccC---CCCCcC-CeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccC---CCCC--c
Confidence 479999998887666542 221111 11111234 4554433222 2359999999988887752 1111 1
Q ss_pred eEEEEE-CCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEE-ECCEEEEEcCCCCCCCcCeEEE
Q 005493 252 HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLI 329 (694)
Q Consensus 252 hs~~~~-~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~-~~~~iyV~GG~~~~~~~~~v~~ 329 (694)
...... +++.|+......+ ..++|.+|+.++....+...+ ......... .+..|++.+...+ ...+++
T Consensus 290 ~~~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g---~~~I~~ 359 (429)
T PRK03629 290 TEPTWFPDSQNLAYTSDQAG---RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG---QQHIAK 359 (429)
T ss_pred CceEECCCCCEEEEEeCCCC---CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC---CceEEE
Confidence 122223 3443333322211 357999999988777764321 111111111 2344544443322 246899
Q ss_pred EECCCCcEEEee
Q 005493 330 FDILKGEWSVAI 341 (694)
Q Consensus 330 yd~~t~~W~~l~ 341 (694)
+|+.+..+..+.
T Consensus 360 ~dl~~g~~~~Lt 371 (429)
T PRK03629 360 QDLATGGVQVLT 371 (429)
T ss_pred EECCCCCeEEeC
Confidence 999999888765
|
|
| >PRK10884 SH3 domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=92.46 E-value=0.88 Score=45.51 Aligned_cols=77 Identities=22% Similarity=0.187 Sum_probs=46.9
Q ss_pred hhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHH
Q 005493 581 KNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVA 660 (694)
Q Consensus 581 ~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 660 (694)
+-..||+||+.+.+.+.++..+.. ..+.+++.+++......+.|+++.+.+..+-++ +..++.
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~--------------~~~~~~ 156 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV--------------AQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
Confidence 335677777777777777776655 445566666666556555566655555432222 455666
Q ss_pred HHHHHHhhhhhhhh
Q 005493 661 FLKAVLDDTQKVNC 674 (694)
Q Consensus 661 ~~~~~~~~~~~~~~ 674 (694)
.|+|-+|+.|++..
T Consensus 157 ~l~~~~~~~~~~~~ 170 (206)
T PRK10884 157 AANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777666543
|
|
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=92.35 E-value=12 Score=36.84 Aligned_cols=153 Identities=14% Similarity=0.169 Sum_probs=77.1
Q ss_pred EEEEECCEEEEEcCCCCCCCcCcEEEEECCCCc--EEEcccccccCCCCCCCCCCCccceEEEEEC-CEEEEEccccCCC
Q 005493 93 AAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWG-KKVLLVGGKTDSG 169 (694)
Q Consensus 93 s~~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~-~~Iyv~GG~~~~~ 169 (694)
+++...+++|+|-| +.+|+++..... -..+... .+. .|..-..+..... +++|+|-|.
T Consensus 11 A~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~-------w~~-~p~~IDAa~~~~~~~~~yfFkg~---- 71 (194)
T cd00094 11 AVTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSF-------WPS-LPSPVDAAFERPDTGKIYFFKGD---- 71 (194)
T ss_pred eEEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhh-------CCC-CCCCccEEEEECCCCEEEEECCC----
Confidence 34445688999977 456777765211 1122211 000 1222222222223 899999653
Q ss_pred CCccEEEEEECCCCcEE---EeeecCCCCC--cceeeEEEEE-CCeEEEEccccCCCccccceEEeeCCCCcEEE-----
Q 005493 170 SDRVSVWTFDTETECWS---VVEAKGDIPV--ARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLP----- 238 (694)
Q Consensus 170 ~~~~~v~~yd~~t~~W~---~~~~~g~~p~--~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~----- 238 (694)
.+|+|+..+..+. .+.. -..|. .....+...- ++++|+|-| +..|+||..+++...
T Consensus 72 ----~yw~~~~~~~~~~~Pk~i~~-~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~~v~~~yP~~ 138 (194)
T cd00094 72 ----KYWVYTGKNLEPGYPKPISD-LGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQKMDPGYPKL 138 (194)
T ss_pred ----EEEEEcCcccccCCCcchhh-cCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCccccCCCCcc
Confidence 6888887642221 1111 01222 2223333232 579999976 457788875554321
Q ss_pred cccC-CCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCc
Q 005493 239 LHCT-GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (694)
Q Consensus 239 l~~~-g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~ 286 (694)
+... ..+|.. . .++....+..+|+|-|. ..|+||..+.+
T Consensus 139 i~~~w~g~p~~-i-daa~~~~~~~~yfF~g~-------~y~~~d~~~~~ 178 (194)
T cd00094 139 IETDFPGVPDK-V-DAAFRWLDGYYYFFKGD-------QYWRFDPRSKE 178 (194)
T ss_pred hhhcCCCcCCC-c-ceeEEeCCCcEEEEECC-------EEEEEeCccce
Confidence 1000 123322 2 23333442338998874 68999988765
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=92.29 E-value=13 Score=36.86 Aligned_cols=188 Identities=11% Similarity=0.114 Sum_probs=86.1
Q ss_pred CCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEEC-CeEEEEccccCCCccccceEEeeCCCC
Q 005493 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDLHMFDLKSL 234 (694)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~ 234 (694)
++..+++|+.. ..+.+||..+......-. ... ..-.++.... +.+++.|+.+ ..+..||+.+.
T Consensus 62 ~~~~l~~~~~~------~~i~i~~~~~~~~~~~~~---~~~-~~i~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~ 125 (289)
T cd00200 62 DGTYLASGSSD------KTIRLWDLETGECVRTLT---GHT-SYVSSVAFSPDGRILSSSSRD------KTIKVWDVETG 125 (289)
T ss_pred CCCEEEEEcCC------CeEEEEEcCcccceEEEe---ccC-CcEEEEEEcCCCCEEEEecCC------CeEEEEECCCc
Confidence 34466666642 378889888753322110 111 1122233332 4666666522 45888998755
Q ss_pred cEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEE-CCEEE
Q 005493 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWY 313 (694)
Q Consensus 235 ~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~-~~~iy 313 (694)
+....- . .....-.++....+..+++.|+.+ ..+.+||+.+..-...-.. ......++... ++..+
T Consensus 126 ~~~~~~---~-~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l 192 (289)
T cd00200 126 KCLTTL---R-GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKCVATLTG----HTGEVNSVAFSPDGEKL 192 (289)
T ss_pred EEEEEe---c-cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEccccccceeEec----CccccceEEECCCcCEE
Confidence 433221 1 111122334444434244444423 3588999875432221111 11112222333 34456
Q ss_pred EEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccC
Q 005493 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (694)
Q Consensus 314 V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~ 389 (694)
++++.++ .+.+||+.+....... .. .........+. ++ ..+++.|+.+ ..+.+|++...
T Consensus 193 ~~~~~~~-----~i~i~d~~~~~~~~~~--~~----~~~~i~~~~~~-~~-~~~~~~~~~~----~~i~i~~~~~~ 251 (289)
T cd00200 193 LSSSSDG-----TIKLWDLSTGKCLGTL--RG----HENGVNSVAFS-PD-GYLLASGSED----GTIRVWDLRTG 251 (289)
T ss_pred EEecCCC-----cEEEEECCCCceecch--hh----cCCceEEEEEc-CC-CcEEEEEcCC----CcEEEEEcCCc
Confidence 6666533 4889998774433221 00 11122223332 22 4555555522 25778887653
|
|
| >PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.87 Score=48.07 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=64.9
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHh-----hHHHHhh---hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhh
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALV-----NREAAEK---NFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE 640 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~e~---~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~ 640 (694)
.....+++.+..+++.|.++++.++. ....++. +....-.....++++++...++++.++++++.+..+-+.
T Consensus 23 ~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 23 LELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888899998888877 3222222 222222222333333333444444444444443322221
Q ss_pred h-------cccccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 005493 641 A-------NSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEFL 685 (694)
Q Consensus 641 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (694)
. ..+.+........+.+++.-.+..+...++++...|..++.|..
T Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~ 154 (302)
T PF10186_consen 103 RRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELS 154 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11223333334445567777888888888888888888877653
|
In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy |
| >PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit | Back alignment and domain information |
|---|
Probab=92.23 E-value=1 Score=43.20 Aligned_cols=106 Identities=22% Similarity=0.135 Sum_probs=66.2
Q ss_pred hHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhccc
Q 005493 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV-------LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL 644 (694)
Q Consensus 572 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~-------~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~ 644 (694)
...+.++++++..||+||++++..++..++.+... .+..++||++.....++++.+.+|+.-+..- .+...+
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~-~~~~~~ 97 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQL-DDSGVL 97 (160)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcc-cccccc
Confidence 35677899999999999998888887777766654 6667777777777777877777775333221 111222
Q ss_pred ccccc-----------cCCccc-hhhHHHHHHHHhhhhhhhhhhhhhhh
Q 005493 645 SNIVH-----------SDNVRL-EHDVAFLKAVLDDTQKVNCSYYTQLM 681 (694)
Q Consensus 645 ~~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (694)
+-.+. .++..+ ..|+.-|..-|. |-|+|.++-+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~d~el~~l~~ql~---~hl~s~~~n~~ 143 (160)
T PF13094_consen 98 ELPELPQKSLLEASESRFAPTLCDEELLPLLKQLN---KHLESMQNNLQ 143 (160)
T ss_pred ccccccccccccccccccCcccchHHHHHHHHHHH---HHHHHHHccHH
Confidence 22111 134455 555555555554 66666655443
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.21 E-value=19 Score=38.80 Aligned_cols=241 Identities=16% Similarity=0.173 Sum_probs=118.9
Q ss_pred CCCCceEEeeccCCCCCCccceEEEEEC-CEEEEEcCCCCCCCcCcEEEEECC--CCcEEEcccccccCCCCCCCCCCCc
Q 005493 71 GNSENWMVLSIAGDKPIPRFNHAAAVIG-NKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPAC 147 (694)
Q Consensus 71 ~~t~~W~~l~~~~~~P~~R~~hs~~~~~-~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~p~~~~~~~p~r 147 (694)
.....|+... .|....-..+++.+ +..|++|-. . .+|-.. -.+|+..... .+....
T Consensus 32 ~~~~~W~~~~----~~~~~~l~~v~F~d~~~g~avG~~------G--~il~T~DgG~tW~~~~~~---------~~~~~~ 90 (334)
T PRK13684 32 LSSSPWQVID----LPTEANLLDIAFTDPNHGWLVGSN------R--TLLETNDGGETWEERSLD---------LPEENF 90 (334)
T ss_pred ccCCCcEEEe----cCCCCceEEEEEeCCCcEEEEECC------C--EEEEEcCCCCCceECccC---------Cccccc
Confidence 3667898885 34343444555554 457777731 1 233332 3589987642 111111
Q ss_pred cceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEEC-CeEEEEccccCCCccccce
Q 005493 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLNDL 226 (694)
Q Consensus 148 ~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~-~~lyv~GG~~~~~~~~~~v 226 (694)
...++...++..|+.|.. ..+++-+-.-.+|+.+......|... .....++ +.+|+.|.. ..+
T Consensus 91 ~l~~v~~~~~~~~~~G~~-------g~i~~S~DgG~tW~~~~~~~~~~~~~--~~i~~~~~~~~~~~g~~-------G~i 154 (334)
T PRK13684 91 RLISISFKGDEGWIVGQP-------SLLLHTTDGGKNWTRIPLSEKLPGSP--YLITALGPGTAEMATNV-------GAI 154 (334)
T ss_pred ceeeeEEcCCcEEEeCCC-------ceEEEECCCCCCCeEccCCcCCCCCc--eEEEEECCCcceeeecc-------ceE
Confidence 222333345566766532 13555444456899886311123222 2233333 456665532 235
Q ss_pred EEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEE-EcCCCcEEEeeccCCCCCCCcceEE
Q 005493 227 HMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL-DFETMIWTRIKIRGFHPSPRAGCCG 305 (694)
Q Consensus 227 ~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~y-d~~t~~W~~l~~~~~~p~~R~~~sa 305 (694)
++=+-.-.+|+.+.. +..-..+.+....+..+++.|... .++.- |....+|+.+.. +..+..+++
T Consensus 155 ~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW~~~~~----~~~~~l~~i 220 (334)
T PRK13684 155 YRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAWTPHQR----NSSRRLQSM 220 (334)
T ss_pred EEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeEEEeeC----CCcccceee
Confidence 554445678998852 223344555666666444554332 24433 344567999854 344444555
Q ss_pred EEE-CCEEEEEcCCCCCCCcCeEEEEE-C-CCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCC
Q 005493 306 VLC-GTKWYIAGGGSRKKRHAETLIFD-I-LKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK 374 (694)
Q Consensus 306 v~~-~~~iyV~GG~~~~~~~~~v~~yd-~-~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~ 374 (694)
+.. ++.+|++|... ..++. . .-.+|+.+.. |. .........+.+. ..+.+|++|...
T Consensus 221 ~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~-~~--~~~~~~l~~v~~~--~~~~~~~~G~~G 280 (334)
T PRK13684 221 GFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPII-PE--ITNGYGYLDLAYR--TPGEIWAGGGNG 280 (334)
T ss_pred eEcCCCCEEEEecCC-------EEEEccCCCCCccccccC-Cc--cccccceeeEEEc--CCCCEEEEcCCC
Confidence 443 67888887532 23342 2 2358997542 10 1111222222332 234678877653
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.20 E-value=22 Score=39.49 Aligned_cols=141 Identities=11% Similarity=0.095 Sum_probs=75.7
Q ss_pred cceEEeeCCCCcEEEcccCCCCCCCcceeEEEEE-CCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcc
Q 005493 224 NDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG 302 (694)
Q Consensus 224 ~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~ 302 (694)
..+|++|+.++.-+.+. ..+.. ....... +++.|++....++ ..++|++|+.++.++.+... +. . .
T Consensus 223 ~~l~~~~l~~g~~~~l~---~~~g~--~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~---~~-~-~ 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQIT---NFEGL--NGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNH---PA-I-D 289 (430)
T ss_pred CEEEEEECCCCCEEEcc---CCCCC--cCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccC---CC-C-c
Confidence 57999999998887775 22211 1122222 3443443322111 25799999999998877542 11 1 1
Q ss_pred eEEEE--ECCEEEEEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCc
Q 005493 303 CCGVL--CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQ 380 (694)
Q Consensus 303 ~sav~--~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~ 380 (694)
..... .+..||+.....+ ...+|.+|+.+..+..+... .. ......+.. +...|+......+ ...
T Consensus 290 ~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~------~~-~~~~~~~Sp-dg~~i~~~~~~~~--~~~ 356 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFV------GN-YNARPRLSA-DGKTLVMVHRQDG--NFH 356 (430)
T ss_pred CCeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecC------CC-CccceEECC-CCCEEEEEEccCC--ceE
Confidence 11111 2445665543222 24799999998888776421 11 112223333 3345655543322 336
Q ss_pred EEEEECccCC
Q 005493 381 VEVLSIEKNE 390 (694)
Q Consensus 381 v~~~di~~~~ 390 (694)
++++|+.+.+
T Consensus 357 l~~~dl~tg~ 366 (430)
T PRK00178 357 VAAQDLQRGS 366 (430)
T ss_pred EEEEECCCCC
Confidence 8889987765
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.16 E-value=21 Score=39.83 Aligned_cols=186 Identities=9% Similarity=0.015 Sum_probs=91.4
Q ss_pred ccEEEEEECCCCcEEEeeecCCCCCcceeeEEEE-ECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcc
Q 005493 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (694)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~ 250 (694)
...+|+.|.....=+.+... .... ...+. -+++.+++...... ...+|++|+.+++...+. ..+.. .
T Consensus 183 ~~~l~i~D~~g~~~~~lt~~---~~~v--~~p~wSpDg~~la~~s~~~~---~~~l~~~dl~~g~~~~l~---~~~g~-~ 250 (433)
T PRK04922 183 RYALQVADSDGYNPQTILRS---AEPI--LSPAWSPDGKKLAYVSFERG---RSAIYVQDLATGQRELVA---SFRGI-N 250 (433)
T ss_pred eEEEEEECCCCCCceEeecC---CCcc--ccccCCCCCCEEEEEecCCC---CcEEEEEECCCCCEEEec---cCCCC-c
Confidence 34688888765433333211 1110 11111 23444444433221 356999999988877765 22221 1
Q ss_pred eeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEE-CC-EEEEEcCCCCCCCcCeEE
Q 005493 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GT-KWYIAGGGSRKKRHAETL 328 (694)
Q Consensus 251 ~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~-~~-~iyV~GG~~~~~~~~~v~ 328 (694)
......-+++.|++....++ ..++|++|+.++..+.+... +. . ....... ++ .|++.....+ ...+|
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~---~~-~-~~~~~~spDG~~l~f~sd~~g---~~~iy 319 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNH---FG-I-DTEPTWAPDGKSIYFTSDRGG---RPQIY 319 (433)
T ss_pred cCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccC---CC-C-ccceEECCCCCEEEEEECCCC---CceEE
Confidence 11112223443444322222 25799999999887776542 11 1 1111222 34 4544433222 24799
Q ss_pred EEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 329 IFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 329 ~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
.+|+.+..+..+... .... ....+.. ++..|+...+.++ ...++++|+.+.+
T Consensus 320 ~~dl~~g~~~~lt~~------g~~~-~~~~~Sp-DG~~Ia~~~~~~~--~~~I~v~d~~~g~ 371 (433)
T PRK04922 320 RVAASGGSAERLTFQ------GNYN-ARASVSP-DGKKIAMVHGSGG--QYRIAVMDLSTGS 371 (433)
T ss_pred EEECCCCCeEEeecC------CCCc-cCEEECC-CCCEEEEEECCCC--ceeEEEEECCCCC
Confidence 999988888776421 1111 1233433 3345655444222 2378888886655
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=92.04 E-value=23 Score=39.27 Aligned_cols=218 Identities=15% Similarity=0.166 Sum_probs=106.0
Q ss_pred CCCceEEeeccCCCCCCc--cceEEEEECCEEEEEcCCCCCCCcCcEEEEECC--CCcEEEcccccccCCCCCCCCCCCc
Q 005493 72 NSENWMVLSIAGDKPIPR--FNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPAC 147 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~~R--~~hs~~~~~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~p~~~~~~~p~r 147 (694)
--.+|+...........+ ...++...++..|++|-.. .+|... ..+|+.++.. ...|..
T Consensus 118 GG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~G--------~il~T~DgG~tW~~~~~~---------~~~p~~ 180 (398)
T PLN00033 118 GGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKPA--------ILLHTSDGGETWERIPLS---------PKLPGE 180 (398)
T ss_pred CCCCceECccCcccccccccceeeeEEECCEEEEEcCce--------EEEEEcCCCCCceECccc---------cCCCCC
Confidence 457898864211111111 2345555677788886321 333333 3699988652 111111
Q ss_pred cceEEEEE-CCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecC-CCCCcc--------------eeeEEEE-ECCeE
Q 005493 148 RGHSLISW-GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG-DIPVAR--------------SGHTVVR-ASSVL 210 (694)
Q Consensus 148 ~~~s~v~~-~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g-~~p~~R--------------~~~~~~~-~~~~l 210 (694)
.+..... ++.++++|... .+++-+-.-.+|+.+.... +.|..+ ....+.. -++.+
T Consensus 181 -~~~i~~~~~~~~~ivg~~G-------~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~ 252 (398)
T PLN00033 181 -PVLIKATGPKSAEMVTDEG-------AIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDY 252 (398)
T ss_pred -ceEEEEECCCceEEEeccc-------eEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCE
Confidence 2333334 45677877432 4777666667898762100 001110 1111121 23455
Q ss_pred EEEccccCCCccccceEEe-eCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcE--
Q 005493 211 ILFGGEDGKRRKLNDLHMF-DLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW-- 287 (694)
Q Consensus 211 yv~GG~~~~~~~~~~v~~y-d~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W-- 287 (694)
+++|-. ..+++- |.-...|+.+. .|.++...++....+..+++.|... .++.-+.....|
T Consensus 253 ~~vg~~-------G~~~~s~d~G~~~W~~~~----~~~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~ 315 (398)
T PLN00033 253 VAVSSR-------GNFYLTWEPGQPYWQPHN----RASARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEED 315 (398)
T ss_pred EEEECC-------ccEEEecCCCCcceEEec----CCCccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccc
Confidence 555422 224432 22223489884 4555555555555554477776542 244444444444
Q ss_pred ---EEeeccCCCCCCCcceE-EEEE-CCEEEEEcCCCCCCCcCeEEEEECCCCcEEEee
Q 005493 288 ---TRIKIRGFHPSPRAGCC-GVLC-GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (694)
Q Consensus 288 ---~~l~~~~~~p~~R~~~s-av~~-~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~ 341 (694)
..+.. +..+.... +... ++.+|+.|... -++.-...-.+|+...
T Consensus 316 ~~f~~~~~----~~~~~~l~~v~~~~d~~~~a~G~~G------~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 316 FDFEEADI----KSRGFGILDVGYRSKKEAWAAGGSG------ILLRSTDGGKSWKRDK 364 (398)
T ss_pred cceeeccc----CCCCcceEEEEEcCCCcEEEEECCC------cEEEeCCCCcceeEcc
Confidence 44322 22333333 3333 56788888643 2444455667899864
|
|
| >PF15188 CCDC-167: Coiled-coil domain-containing protein 167 | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.21 Score=42.20 Aligned_cols=63 Identities=29% Similarity=0.333 Sum_probs=51.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhhhh
Q 005493 605 SVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYT 678 (694)
Q Consensus 605 ~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (694)
+|.++.+.+|+|++.-.++.|.+..||-..++--| +-..||.|+.-||.+|+..+|||+..|.
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e-----------~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPE-----------ARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChH-----------HHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 45678888999999999999998888888775333 3456789999999999999999998876
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=91.84 E-value=17 Score=37.26 Aligned_cols=234 Identities=18% Similarity=0.183 Sum_probs=106.9
Q ss_pred CCEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEE-CCEEEEEccccCCCCCccEEE
Q 005493 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDSGSDRVSVW 176 (694)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~-~~~Iyv~GG~~~~~~~~~~v~ 176 (694)
+..+|+.++.. +.+.+||+.+......-+. . ... . ...+.- ++.+|+.++.. ..+.
T Consensus 42 g~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~---------~-~~~-~-~~~~~~~g~~l~~~~~~~------~~l~ 98 (300)
T TIGR03866 42 GKLLYVCASDS-----DTIQVIDLATGEVIGTLPS---------G-PDP-E-LFALHPNGKILYIANEDD------NLVT 98 (300)
T ss_pred CCEEEEEECCC-----CeEEEEECCCCcEEEeccC---------C-CCc-c-EEEECCCCCEEEEEcCCC------CeEE
Confidence 34577776532 4688999988765442210 0 111 1 111222 34566665421 3799
Q ss_pred EEECCCCcEEEeeecCCCCCcceeeEEEE-ECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEE
Q 005493 177 TFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (694)
Q Consensus 177 ~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~ 255 (694)
.||+.+.+-... ++......+++. -++.+++++..+. +.++.||..+..-......+..| .+...
T Consensus 99 ~~d~~~~~~~~~-----~~~~~~~~~~~~~~dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~----~~~~~ 164 (300)
T TIGR03866 99 VIDIETRKVLAE-----IPVGVEPEGMAVSPDGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVDQRP----RFAEF 164 (300)
T ss_pred EEECCCCeEEeE-----eeCCCCcceEEECCCCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcCCCc----cEEEE
Confidence 999987643211 111111123333 3566777664332 23566787765433221111211 12222
Q ss_pred EECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEE-eecc--CCCCCCCcceEEEEE--CCEEEEEcCCCCCCCcCeEEEE
Q 005493 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-IKIR--GFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIF 330 (694)
Q Consensus 256 ~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~-l~~~--~~~p~~R~~~sav~~--~~~iyV~GG~~~~~~~~~v~~y 330 (694)
.-++..++ +++... +.+.+||+.+..... +... +..+........+.. +..+|+..+.. +.+.+|
T Consensus 165 s~dg~~l~-~~~~~~----~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-----~~i~v~ 234 (300)
T TIGR03866 165 TADGKELW-VSSEIG----GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-----NRVAVV 234 (300)
T ss_pred CCCCCEEE-EEcCCC----CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC-----CeEEEE
Confidence 22444344 443211 358999998765422 2211 001111111222222 34556654432 358899
Q ss_pred ECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 331 DILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 331 d~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
|+.+..-.... .. .. ....+.+.. +..+||+..+.+ +.+.+||+.+.+
T Consensus 235 d~~~~~~~~~~--~~----~~-~~~~~~~~~-~g~~l~~~~~~~----~~i~v~d~~~~~ 282 (300)
T TIGR03866 235 DAKTYEVLDYL--LV----GQ-RVWQLAFTP-DEKYLLTTNGVS----NDVSVIDVAALK 282 (300)
T ss_pred ECCCCcEEEEE--Ee----CC-CcceEEECC-CCCEEEEEcCCC----CeEEEEECCCCc
Confidence 98764432211 11 11 122233432 334565444432 268899987755
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=91.72 E-value=17 Score=37.50 Aligned_cols=149 Identities=14% Similarity=0.145 Sum_probs=85.1
Q ss_pred cceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEE-EeeecCCCCCccee------------eEEEEECCeEEEEc
Q 005493 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAKGDIPVARSG------------HTVVRASSVLILFG 214 (694)
Q Consensus 148 ~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~R~~------------~~~~~~~~~lyv~G 214 (694)
.|.+.+++++.+|.--. ..+.+.+||+.+..-. ... +|.+.+. .-.++..+-|+|+-
T Consensus 70 ~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~----L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIY 139 (250)
T PF02191_consen 70 QGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRE----LPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIY 139 (250)
T ss_pred ccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEE----CCccccccccceecCCCceEEEEEcCCCEEEEE
Confidence 46677889999988633 4569999999998766 332 3332222 12233445677775
Q ss_pred cccCCCccccceEEeeCCCC----cEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEe
Q 005493 215 GEDGKRRKLNDLHMFDLKSL----TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI 290 (694)
Q Consensus 215 G~~~~~~~~~~v~~yd~~t~----~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l 290 (694)
....+.. .-.+-..|+.+- +|.. ..+.+..+.+..++ +- ||++...+... ..-.++||+.+++=..+
T Consensus 140 at~~~~g-~ivvskld~~tL~v~~tw~T-----~~~k~~~~naFmvC-Gv-LY~~~s~~~~~-~~I~yafDt~t~~~~~~ 210 (250)
T PF02191_consen 140 ATEDNNG-NIVVSKLDPETLSVEQTWNT-----SYPKRSAGNAFMVC-GV-LYATDSYDTRD-TEIFYAFDTYTGKEEDV 210 (250)
T ss_pred ecCCCCC-cEEEEeeCcccCceEEEEEe-----ccCchhhcceeeEe-eE-EEEEEECCCCC-cEEEEEEECCCCceece
Confidence 5543311 122445566543 4653 34555555544443 34 77776654332 33468999998876655
Q ss_pred eccCCCCCCCcceEEEEE---CCEEEEEcC
Q 005493 291 KIRGFHPSPRAGCCGVLC---GTKWYIAGG 317 (694)
Q Consensus 291 ~~~~~~p~~R~~~sav~~---~~~iyV~GG 317 (694)
... .+.+-..++++.. +.+||+.--
T Consensus 211 ~i~--f~~~~~~~~~l~YNP~dk~LY~wd~ 238 (250)
T PF02191_consen 211 SIP--FPNPYGNISMLSYNPRDKKLYAWDN 238 (250)
T ss_pred eee--eccccCceEeeeECCCCCeEEEEEC
Confidence 432 2333334555554 578888764
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=91.66 E-value=1.4 Score=49.85 Aligned_cols=111 Identities=21% Similarity=0.231 Sum_probs=57.3
Q ss_pred hHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHH---HHHHHHHHHHHHHHH----HHHhhhhHhHhhhccc
Q 005493 572 ESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEM---EKKLADSLKEMELLK----EKLAGLELAQEEANSL 644 (694)
Q Consensus 572 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~---e~~~~~~~~~~~~l~----~k~~~~~~~~e~~~~~ 644 (694)
......+..++..|..|++.+.....+.|.++.++.+...+. ..++..+..+.|.++ ++|.... .+.++
T Consensus 198 ~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~---~~~~~- 273 (546)
T PF07888_consen 198 TESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETV---VQLKQ- 273 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-
Confidence 334445566666666666666666666666666663333222 223333333333222 2222110 00000
Q ss_pred ccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhc
Q 005493 645 SNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEFLHDELAG 691 (694)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (694)
-...+.+++-|+..||..|..+|..|.+++.. .+++.+||+-
T Consensus 274 ---~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~--~~~L~~EL~~ 315 (546)
T PF07888_consen 274 ---EETQAQQLQQENEALKEQLRSAQEQLQASQQE--AELLRKELSD 315 (546)
T ss_pred ---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 01134567777888888888888888777643 2445555543
|
This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region []. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=26 Score=39.10 Aligned_cols=189 Identities=12% Similarity=0.043 Sum_probs=102.7
Q ss_pred CcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEEC-CEEEEEccccCCCCCccEEEEEECCCCcEEEeeecC
Q 005493 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG-KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (694)
Q Consensus 114 ~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~-~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 192 (694)
.++|++|+.++.=+.+... +.........-+ .+|++.-... ...++|.+|+.++.++.+..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~------------~g~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~g~~~~LT~-- 274 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASS------------QGMLVVSDVSKDGSKLLLTMAPK----GQPDIYLYDTNTKTLTQITN-- 274 (419)
T ss_pred CEEEEEECCCCcEEEEecC------------CCcEEeeEECCCCCEEEEEEccC----CCcEEEEEECCCCcEEEccc--
Confidence 3789999988766666531 111111112223 4555543321 23589999999999988863
Q ss_pred CCCCcceeeEEEE--ECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCC
Q 005493 193 DIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSK 270 (694)
Q Consensus 193 ~~p~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~ 270 (694)
.+. ....... .+.+||+.-...+ ...+|++|+.+...+++...|. +.. ...-+++.|++......
T Consensus 275 -~~~--~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 275 -YPG--IDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRETN 341 (419)
T ss_pred -CCC--ccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcCCC
Confidence 221 1111122 2345666543322 3579999999999988764322 222 22234453444333221
Q ss_pred CC---CCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECC-EEEEEcCCCCCCCcCeEEEEECCCCcEEEee
Q 005493 271 SK---TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT-KWYIAGGGSRKKRHAETLIFDILKGEWSVAI 341 (694)
Q Consensus 271 ~~---~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~-~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l~ 341 (694)
.. ...+++++|+.++.++.+...+ ....-...-++ .|++.... + ....++.+++..+.=..++
T Consensus 342 ~~~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~-~--~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL-G--NQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred cccCCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc-C--CcEEEEEEecCCCeeEEee
Confidence 11 2358999999999998886531 11111111244 45554332 2 2246888888776555554
|
|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
Probab=91.38 E-value=1.1 Score=50.13 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=16.2
Q ss_pred HHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 005493 587 GQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKL 631 (694)
Q Consensus 587 ~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~ 631 (694)
.++..+...++.++++++.+-+...+++++++.+.++++.|++++
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI 112 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASI 112 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=91.14 E-value=29 Score=38.71 Aligned_cols=145 Identities=12% Similarity=0.063 Sum_probs=76.2
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceeeEEEE-ECC-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcc
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRS 250 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~ 250 (694)
..+|.+|+.+++=..+.. .+. ...+.+. -++ +|++....++ ..++|.+|+.+...+++.. .. ...
T Consensus 220 ~~I~~~dl~~g~~~~l~~---~~g--~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~---~~-~~~ 286 (427)
T PRK02889 220 PVVYVHDLATGRRRVVAN---FKG--SNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQ---SS-GID 286 (427)
T ss_pred cEEEEEECCCCCEEEeec---CCC--CccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCC---CC-CCC
Confidence 479999999887655541 221 1111222 234 4544433332 2679999998887777642 11 111
Q ss_pred eeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEE--ECCEEEEEcCCCCCCCcCeEE
Q 005493 251 NHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL--CGTKWYIAGGGSRKKRHAETL 328 (694)
Q Consensus 251 ~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~--~~~~iyV~GG~~~~~~~~~v~ 328 (694)
......-+++.|++.....+ ..++|.++..++..+.+...+ ........ .+..|+......+. ..++
T Consensus 287 ~~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~g~---~~I~ 355 (427)
T PRK02889 287 TEPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRVGGA---FKLY 355 (427)
T ss_pred cCeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEccCCc---EEEE
Confidence 11122224443444332221 257999998888887775321 11112222 24455544432221 3689
Q ss_pred EEECCCCcEEEee
Q 005493 329 IFDILKGEWSVAI 341 (694)
Q Consensus 329 ~yd~~t~~W~~l~ 341 (694)
++|+.+.....+.
T Consensus 356 v~d~~~g~~~~lt 368 (427)
T PRK02889 356 VQDLATGQVTALT 368 (427)
T ss_pred EEECCCCCeEEcc
Confidence 9999988877654
|
|
| >PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.6 Score=35.65 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=52.9
Q ss_pred HHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q 005493 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 637 (694)
Q Consensus 578 ~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~ 637 (694)
|=..+++|..+|+-|++..+--+-.+..+.++|+.+..+|..+..+..+||.++..+..+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999999999999999999999999999999999998887654
|
|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=90.80 E-value=1.1 Score=57.95 Aligned_cols=20 Identities=20% Similarity=-0.021 Sum_probs=12.6
Q ss_pred ccCCCCccccccccccccCC
Q 005493 529 DYENSNPLVQGIGNFHVDND 548 (694)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~ 548 (694)
.++|---+++||++..+-.|
T Consensus 690 VLEgIRicR~GfPnr~~~~e 709 (1930)
T KOG0161|consen 690 VLEGIRICRQGFPNRMPFQE 709 (1930)
T ss_pred cHHHHHHHHhhCccccchHH
Confidence 34556667788877765444
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=90.76 E-value=33 Score=38.64 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=78.4
Q ss_pred CcEEEEECCCCcEEEcccccccCCCCCCCCCCCccc-eEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecC
Q 005493 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRG-HSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (694)
Q Consensus 114 ~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~-~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 192 (694)
..+|++|+.++.-+.+... +.... ......++.|++..... ...++|.+|+.+++.+.+....
T Consensus 242 ~~L~~~dl~tg~~~~lt~~------------~g~~~~~~wSPDG~~La~~~~~~----g~~~Iy~~dl~tg~~~~lt~~~ 305 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSF------------PGINGAPRFSPDGKKLALVLSKD----GQPEIYVVDIATKALTRITRHR 305 (448)
T ss_pred cEEEEEECCCCCeEEecCC------------CCCcCCeeECCCCCEEEEEEeCC----CCeEEEEEECCCCCeEECccCC
Confidence 4678888887766555431 11111 11111244565553322 2358999999999988775311
Q ss_pred CCCCcceeeEEEEECC-eEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCC
Q 005493 193 DIPVARSGHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS 271 (694)
Q Consensus 193 ~~p~~R~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~ 271 (694)
.........-++ .|++.....+ ...+|++|+.+.+++.+...+.. .......-+++.|++.+...
T Consensus 306 ----~~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~~~-- 371 (448)
T PRK04792 306 ----AIDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNRTN-- 371 (448)
T ss_pred ----CCccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEecC--
Confidence 111111112244 4444332222 25799999999999887532211 11112222445454443222
Q ss_pred CCCCeEEEEEcCCCcEEEeec
Q 005493 272 KTLNDLYSLDFETMIWTRIKI 292 (694)
Q Consensus 272 ~~~~dv~~yd~~t~~W~~l~~ 292 (694)
....++++|+.++..+.+..
T Consensus 372 -g~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 372 -GKFNIARQDLETGAMQVLTS 391 (448)
T ss_pred -CceEEEEEECCCCCeEEccC
Confidence 12469999999998877654
|
|
| >PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells | Back alignment and domain information |
|---|
Probab=90.68 E-value=0.68 Score=49.50 Aligned_cols=93 Identities=19% Similarity=0.173 Sum_probs=68.8
Q ss_pred hHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHH
Q 005493 586 EGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAV 665 (694)
Q Consensus 586 ~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (694)
+..++.....+++.|+....++++-+++|+..+.+.++++.|+++.+.++..++++-..-|.-+-+-.+++.+.+=|++-
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q 121 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQ 121 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666777777777777788888888888888888888888777777777777777777777788888888
Q ss_pred Hhhhhhhhhhhhh
Q 005493 666 LDDTQKVNCSYYT 678 (694)
Q Consensus 666 ~~~~~~~~~~~~~ 678 (694)
++-++.+|+..|.
T Consensus 122 ~~~~~~~L~~L~k 134 (314)
T PF04111_consen 122 YEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877665
|
In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A. |
| >KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.49 E-value=2 Score=46.36 Aligned_cols=119 Identities=23% Similarity=0.166 Sum_probs=83.5
Q ss_pred hhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHH---------------HHHHHHHHHHHHhhhh
Q 005493 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLAD---------------SLKEMELLKEKLAGLE 635 (694)
Q Consensus 571 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~---------------~~~~~~~l~~k~~~~~ 635 (694)
.=.|+.+++..-..+||-|.+....+|-|...-..|--+|+.+|+|+-. ..+|.|.|+..|..+|
T Consensus 243 hv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAE 322 (575)
T KOG4403|consen 243 HVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKAE 322 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 3356666777777888999999988888887777777788899998862 2357788888887777
Q ss_pred HhHhhhcccccccccC----CccchhhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhcc
Q 005493 636 LAQEEANSLSNIVHSD----NVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEFLHDELAGL 692 (694)
Q Consensus 636 ~~~e~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (694)
++- |+|+=...+-+= -+.-|-||+|+.-.=.+..|||.+.++ |-|++.|----+
T Consensus 323 kel-e~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake--~~eklkKKrssv 380 (575)
T KOG4403|consen 323 KEL-EANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKE--MAEKLKKKRSSV 380 (575)
T ss_pred HHH-HhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHhhcch
Confidence 653 455422222211 123367899999999999999999887 456666643333
|
|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
Probab=89.96 E-value=1.5 Score=44.91 Aligned_cols=34 Identities=35% Similarity=0.289 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhh
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNF 603 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~ 603 (694)
..+.+....-++-..+++.|+.|....+.+|..+
T Consensus 110 e~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki 143 (237)
T PF00261_consen 110 EAERKYEEVERKLKVLEQELERAEERAEAAESKI 143 (237)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhH
Confidence 3334444444444444444444444444444333
|
In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=89.82 E-value=25 Score=35.75 Aligned_cols=181 Identities=14% Similarity=0.084 Sum_probs=93.3
Q ss_pred CCEEEEEcCCCCCCCcCcEEEEECCCCcEEEcccccccCCCCCCCC-CCCccceEEEEECCEEEEEccccCCCCCc--cE
Q 005493 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLK-IPACRGHSLISWGKKVLLVGGKTDSGSDR--VS 174 (694)
Q Consensus 98 ~~~lyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~-~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~--~~ 174 (694)
++.+|+... ..+.++|+.+..++.+..... .. ...+..-.++.-++.||+.--........ ..
T Consensus 51 ~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~-------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~ 116 (246)
T PF08450_consen 51 DGRLYVADS-------GGIAVVDPDTGKVTVLADLPD-------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGS 116 (246)
T ss_dssp TSEEEEEET-------TCEEEEETTTTEEEEEEEEET-------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEE
T ss_pred CCEEEEEEc-------CceEEEecCCCcEEEEeeccC-------CCcccCCCceEEEcCCCCEEEEecCCCccccccccc
Confidence 677888754 335677999999988876310 01 11222233334467877753222111122 57
Q ss_pred EEEEECCCCcEEEeeecCCCCCcceeeEEEEE-CC-eEEEEccccCCCccccceEEeeCCCCc--EEEcccCCCCCCCc-
Q 005493 175 VWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SS-VLILFGGEDGKRRKLNDLHMFDLKSLT--WLPLHCTGTGPSPR- 249 (694)
Q Consensus 175 v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~l~~~g~~P~~R- 249 (694)
+|++++. .+...+.. .+. ....++.. ++ .||+.- .....+++|++.... +........++...
T Consensus 117 v~~~~~~-~~~~~~~~--~~~---~pNGi~~s~dg~~lyv~d------s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 184 (246)
T PF08450_consen 117 VYRIDPD-GKVTVVAD--GLG---FPNGIAFSPDGKTLYVAD------SFNGRIWRFDLDADGGELSNRRVFIDFPGGPG 184 (246)
T ss_dssp EEEEETT-SEEEEEEE--EES---SEEEEEEETTSSEEEEEE------TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC
T ss_pred eEEECCC-CeEEEEec--Ccc---cccceEECCcchheeecc------cccceeEEEeccccccceeeeeeEEEcCCCCc
Confidence 9999999 77666543 121 22244443 33 577642 234669999986433 33222111222222
Q ss_pred ceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEE----CCEEEEE
Q 005493 250 SNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC----GTKWYIA 315 (694)
Q Consensus 250 ~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~----~~~iyV~ 315 (694)
+--.+++-.+..||+..-. .+.|++||++...-..+.. |.+ ..+.+.+ .+.|||.
T Consensus 185 ~pDG~~vD~~G~l~va~~~-----~~~I~~~~p~G~~~~~i~~----p~~--~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 185 YPDGLAVDSDGNLWVADWG-----GGRIVVFDPDGKLLREIEL----PVP--RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEEEBTTS-EEEEEET-----TTEEEEEETTSCEEEEEE-----SSS--SEEEEEEESTTSSEEEEE
T ss_pred CCCcceEcCCCCEEEEEcC-----CCEEEEECCCccEEEEEcC----CCC--CEEEEEEECCCCCEEEEE
Confidence 2234555444448876211 1369999999666666653 323 3344444 2567775
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.76 E-value=2.6 Score=46.97 Aligned_cols=50 Identities=30% Similarity=0.351 Sum_probs=41.3
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHH-HHHHHHH
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQ-EMEKKLA 618 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~-~~e~~~~ 618 (694)
.-..+++.-+-.+-++|..||++|..+++-|||+|.-+|+.-| |-|.|.+
T Consensus 197 EglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~a 247 (772)
T KOG0999|consen 197 EGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNA 247 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5667888888899999999999999999999999999987644 4444444
|
|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
Probab=89.61 E-value=2.3 Score=42.40 Aligned_cols=110 Identities=25% Similarity=0.282 Sum_probs=83.4
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHH----------HHHHHHHHHHHHHHHHHHHHhhhhHhH
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQ----------EMEKKLADSLKEMELLKEKLAGLELAQ 638 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~----------~~e~~~~~~~~~~~~l~~k~~~~~~~~ 638 (694)
...++.++.+.++|..|..=|..|....+..++++...-+.|+ .+++++....-+.|.|+.++..++.+.
T Consensus 44 ~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 44 ERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999998888888887776533333 446666667778899999999998887
Q ss_pred hhhcc-cccccc-------cCCccchhhHHHHHHHHhhhhhhhhhhhh
Q 005493 639 EEANS-LSNIVH-------SDNVRLEHDVAFLKAVLDDTQKVNCSYYT 678 (694)
Q Consensus 639 e~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (694)
++.-. .-..|+ --|+-||.-++-|-+.|+..+.+|++.-.
T Consensus 124 deL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 124 DELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66553 222333 34788999999999999999999986543
|
|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
Probab=89.20 E-value=4.5 Score=45.33 Aligned_cols=84 Identities=14% Similarity=0.105 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcc---ccc
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS---LSN 646 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~---~~~ 646 (694)
..++++..+.++-..|+.||..+...+.+++++++.+-+...+++++++...++++.+++.++..-++.-+..+ |.-
T Consensus 65 ~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~~~~l~v 144 (428)
T PRK11637 65 QQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQGEHTGLQL 144 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 33455666666666777777777777777777777777777777777777777777777777776666655333 334
Q ss_pred ccccCCc
Q 005493 647 IVHSDNV 653 (694)
Q Consensus 647 ~~~~~~~ 653 (694)
+..+++.
T Consensus 145 Ll~a~~~ 151 (428)
T PRK11637 145 ILSGEES 151 (428)
T ss_pred HhcCCCh
Confidence 5666654
|
|
| >PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A | Back alignment and domain information |
|---|
Probab=89.16 E-value=29 Score=35.71 Aligned_cols=232 Identities=17% Similarity=0.191 Sum_probs=109.1
Q ss_pred CCCceEEeeccCCCC--CCccceEEEEE--CCEEEEEc--CCCCCCCc--CcEEEEECC-CCcEEEcccccccCCCCCCC
Q 005493 72 NSENWMVLSIAGDKP--IPRFNHAAAVI--GNKMIVVG--GESGNGLL--DDVQVLNFD-RFSWTAASSKLYLSPSSLPL 142 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P--~~R~~hs~~~~--~~~lyv~G--G~~~~~~~--~~v~~yd~~-t~~W~~~~~~~~~~p~~~~~ 142 (694)
...+|.....-...+ ..+.+..+.+. +++|++|- +....... .-.+..... ..+|......... +. .
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~-~~---~ 103 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPG-WF---G 103 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHH-CC---C
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccc-cc---c
Confidence 457799864321222 34445554444 78888875 22221111 112355655 3589887642110 00 0
Q ss_pred CCC-CccceEEEEECCEEEEEccccCCCCCccEEEEEECC-CCcEEEeeecCCCCCcceeeEEEE-E-CCeEEEEccccC
Q 005493 143 KIP-ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTE-TECWSVVEAKGDIPVARSGHTVVR-A-SSVLILFGGEDG 218 (694)
Q Consensus 143 ~~p-~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~-t~~W~~~~~~g~~p~~R~~~~~~~-~-~~~lyv~GG~~~ 218 (694)
... ...+..+..-++.+++. .+.........+..|... -.+|+...+.. +.......+.+ . ++.|+++--..
T Consensus 104 ~~~~~~~~~~i~~~~G~l~~~-~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~- 179 (275)
T PF13088_consen 104 NFSGPGRGPPIQLPDGRLIAP-YYHESGGSFSAFVYYSDDGGKTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE- 179 (275)
T ss_dssp SCEECSEEEEEEECTTEEEEE-EEEESSCEEEEEEEEESSTTSSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-
T ss_pred ceeccceeeeeEecCCCEEEE-EeeccccCcceEEEEeCCCCceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-
Confidence 011 11222244447788877 222112223345555555 45699887411 22234443333 3 56888886443
Q ss_pred CCccccceEEeeCC-CCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCC
Q 005493 219 KRRKLNDLHMFDLK-SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHP 297 (694)
Q Consensus 219 ~~~~~~~v~~yd~~-t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p 297 (694)
... .-.+.+..+ -.+|+..... .+|.+.....++.+.+..++++.........-.+++-.-...+|.........+
T Consensus 180 ~~~--~~~~~~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~ 256 (275)
T PF13088_consen 180 GND--DIYISRSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGP 256 (275)
T ss_dssp SST--EEEEEEESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE
T ss_pred CCC--cEEEEEECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCC
Confidence 211 223333333 3469976422 456666666666655544666655221111112333233478998765542223
Q ss_pred CCCcceEEEE-E-CCEEEE
Q 005493 298 SPRAGCCGVL-C-GTKWYI 314 (694)
Q Consensus 298 ~~R~~~sav~-~-~~~iyV 314 (694)
...+++..++ . +++|||
T Consensus 257 ~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 257 NGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp -CCEEEEEEEEEETTEEEE
T ss_pred CCcEECCeeEEeCCCcCCC
Confidence 2345554443 4 578886
|
... |
| >KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=89.14 E-value=2.6 Score=49.59 Aligned_cols=26 Identities=27% Similarity=0.057 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhhhhh
Q 005493 656 EHDVAFLKAVLDDTQKVNCSYYTQLM 681 (694)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (694)
+++-+-|+-..+|+||++.+.+....
T Consensus 437 ~~~h~~lL~K~~di~kQle~~~~s~~ 462 (980)
T KOG0980|consen 437 RQEHADLLRKYDDIQKQLESAEQSID 462 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34455677778888888888776554
|
|
| >KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.07 E-value=2 Score=46.10 Aligned_cols=73 Identities=25% Similarity=0.246 Sum_probs=61.9
Q ss_pred CchhhhhhHHHHHHHHhhchhhHHHHHHHhhHHH--HhhhhHHHHhhHHHHHHHHHHH----HHHHHHHHHHHhhhhHh
Q 005493 565 SSIYQFYESKMAALIRKNGILEGQLAAALVNREA--AEKNFSSVLKSRQEMEKKLADS----LKEMELLKEKLAGLELA 637 (694)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~e~~~~~~~~~~~~~e~~~~~~----~~~~~~l~~k~~~~~~~ 637 (694)
.|+-+.++-+.+++-+.-.-+|..+.++..+++. -+-+|+--.+-.+|.++||..+ .++++.||.|++.+|.-
T Consensus 99 ~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~ 177 (542)
T KOG0993|consen 99 CQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQR 177 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHH
Confidence 4555778888889999999999999999999988 6677888888999999999864 57889999999988843
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=89.04 E-value=8.4 Score=39.92 Aligned_cols=159 Identities=18% Similarity=0.093 Sum_probs=93.1
Q ss_pred eEEEE-ECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEE
Q 005493 150 HSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHM 228 (694)
Q Consensus 150 ~s~v~-~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~ 228 (694)
-++.. .++.+|.--|..+ .+.+..||+.+++-.... ++|..-++-+++.++++||..-=. ....++
T Consensus 48 QGL~~~~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk------~~~~f~ 114 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYG----QSSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWK------EGTGFV 114 (264)
T ss_dssp EEEEEEETTEEEEEECSTT----EEEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESS------SSEEEE
T ss_pred ccEEecCCCEEEEeCCCCC----cEEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEec------CCeEEE
Confidence 34555 5789998877642 468999999999876555 488888999999999999998432 356899
Q ss_pred eeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEE-eeccCCCCCCCcceEEEE
Q 005493 229 FDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTR-IKIRGFHPSPRAGCCGVL 307 (694)
Q Consensus 229 yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~-l~~~~~~p~~R~~~sav~ 307 (694)
||+.+- +.+. ..+.+..+.+++..+.. +++.-|. +.++.+|+++..=.. +... ..+...-.
T Consensus 115 yd~~tl--~~~~---~~~y~~EGWGLt~dg~~-Li~SDGS------~~L~~~dP~~f~~~~~i~V~------~~g~pv~~ 176 (264)
T PF05096_consen 115 YDPNTL--KKIG---TFPYPGEGWGLTSDGKR-LIMSDGS------SRLYFLDPETFKEVRTIQVT------DNGRPVSN 176 (264)
T ss_dssp EETTTT--EEEE---EEE-SSS--EEEECSSC-EEEE-SS------SEEEEE-TTT-SEEEEEE-E------ETTEE---
T ss_pred Eccccc--eEEE---EEecCCcceEEEcCCCE-EEEECCc------cceEEECCcccceEEEEEEE------ECCEECCC
Confidence 999764 3343 44455678888865555 8888774 469999998654322 2111 01111111
Q ss_pred ECCEEEEEcCCC-CC-CCcCeEEEEECCCCcEEEe
Q 005493 308 CGTKWYIAGGGS-RK-KRHAETLIFDILKGEWSVA 340 (694)
Q Consensus 308 ~~~~iyV~GG~~-~~-~~~~~v~~yd~~t~~W~~l 340 (694)
+ +.+=.++|.- .+ -..+.+.+.||.++.-...
T Consensus 177 L-NELE~i~G~IyANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 177 L-NELEYINGKIYANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp E-EEEEEETTEEEEEETTSSEEEEEETTT-BEEEE
T ss_pred c-EeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEE
Confidence 1 2232223321 11 1245788999999875443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=88.98 E-value=63 Score=39.27 Aligned_cols=144 Identities=14% Similarity=0.143 Sum_probs=70.2
Q ss_pred CCEEEEEccccCCCCCccEEEEEECCCCcEE-EeeecCCCCCcceeeEEEE--ECCeEEEEccccCCCccccceEEeeCC
Q 005493 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWS-VVEAKGDIPVARSGHTVVR--ASSVLILFGGEDGKRRKLNDLHMFDLK 232 (694)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~ 232 (694)
++.+++.||.+ ..+..||+.+..-. .+.. ... ..++.. .++.+++.|+.+ +.+.+||+.
T Consensus 587 ~~~~L~Sgs~D------g~v~iWd~~~~~~~~~~~~----~~~--v~~v~~~~~~g~~latgs~d------g~I~iwD~~ 648 (793)
T PLN00181 587 DPTLLASGSDD------GSVKLWSINQGVSIGTIKT----KAN--ICCVQFPSESGRSLAFGSAD------HKVYYYDLR 648 (793)
T ss_pred CCCEEEEEcCC------CEEEEEECCCCcEEEEEec----CCC--eEEEEEeCCCCCEEEEEeCC------CeEEEEECC
Confidence 45777787764 26888888765422 2211 111 111222 246788887754 358889986
Q ss_pred CCc--EEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCC----cEEEeeccCCCCCCCcceEEE
Q 005493 233 SLT--WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM----IWTRIKIRGFHPSPRAGCCGV 306 (694)
Q Consensus 233 t~~--W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~----~W~~l~~~~~~p~~R~~~sav 306 (694)
+.. ...+. + ...+ -..+...++. .++.|+.++ .+.+||+... .|..+..... ........+.
T Consensus 649 ~~~~~~~~~~--~-h~~~--V~~v~f~~~~-~lvs~s~D~-----~ikiWd~~~~~~~~~~~~l~~~~g-h~~~i~~v~~ 716 (793)
T PLN00181 649 NPKLPLCTMI--G-HSKT--VSYVRFVDSS-TLVSSSTDN-----TLKLWDLSMSISGINETPLHSFMG-HTNVKNFVGL 716 (793)
T ss_pred CCCccceEec--C-CCCC--EEEEEEeCCC-EEEEEECCC-----EEEEEeCCCCccccCCcceEEEcC-CCCCeeEEEE
Confidence 543 22221 1 1111 1223334555 566666543 4778887642 2332222100 0111111222
Q ss_pred EECCEEEEEcCCCCCCCcCeEEEEECCC
Q 005493 307 LCGTKWYIAGGGSRKKRHAETLIFDILK 334 (694)
Q Consensus 307 ~~~~~iyV~GG~~~~~~~~~v~~yd~~t 334 (694)
..++.+++.|+.++ .+.+|+...
T Consensus 717 s~~~~~lasgs~D~-----~v~iw~~~~ 739 (793)
T PLN00181 717 SVSDGYIATGSETN-----EVFVYHKAF 739 (793)
T ss_pred cCCCCEEEEEeCCC-----EEEEEECCC
Confidence 23566777777665 377777654
|
|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
Probab=88.91 E-value=3 Score=39.25 Aligned_cols=93 Identities=25% Similarity=0.253 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHH-------hhHHHHhhhhHH---HHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHh
Q 005493 570 FYESKMAALIRKNGILEGQLAAAL-------VNREAAEKNFSS---VLKSRQEMEKKLADSLKEMELLKEKLAGLELAQE 639 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~-------~~~~~~e~~~~~---~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e 639 (694)
..|.+|..|-+++..||.+|+.+. ..+++.++..+. +-+-.|.||..|..+.+.+....+||..++..=+
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae 111 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAE 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445556666666666655555544 444444443332 3444455555555555555555555555443333
Q ss_pred hhcccccccccCCccchhhHHHHHHHHhhhhhhhhhh
Q 005493 640 EANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSY 676 (694)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (694)
+ +|+-|+.|..-.++.++.+...
T Consensus 112 ~--------------~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 112 H--------------FERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred H--------------HHHHHHHHHhhHHHHHHHHHHH
Confidence 2 3566777766666665555443
|
In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis []. |
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=88.78 E-value=13 Score=33.85 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=48.8
Q ss_pred CCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCC-CCcCeEEEEE-CCCCcEEEeec
Q 005493 273 TLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK-KRHAETLIFD-ILKGEWSVAIT 342 (694)
Q Consensus 273 ~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~-~~~~~v~~yd-~~t~~W~~l~~ 342 (694)
..+-+..||+.+.+|+.+..+............+.++|++-++.-.... ...-++|+++ ..+..|.+...
T Consensus 18 ~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 18 DNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQEWSKKHI 89 (129)
T ss_pred CCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccceEEEEEE
Confidence 3567999999999999887631223455566777789998777654433 2345889884 66788987643
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=88.53 E-value=27 Score=34.47 Aligned_cols=189 Identities=11% Similarity=0.085 Sum_probs=86.2
Q ss_pred CCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEE-CCeEEEEccccCCCccccceEEeeCCCC
Q 005493 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (694)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 234 (694)
++.++++|+.. ..+..||..+..-..... ...... ..+... ++..+++|+.+ ..+.+||+.+.
T Consensus 20 ~~~~l~~~~~~------g~i~i~~~~~~~~~~~~~---~~~~~i-~~~~~~~~~~~l~~~~~~------~~i~i~~~~~~ 83 (289)
T cd00200 20 DGKLLATGSGD------GTIKVWDLETGELLRTLK---GHTGPV-RDVAASADGTYLASGSSD------KTIRLWDLETG 83 (289)
T ss_pred CCCEEEEeecC------cEEEEEEeeCCCcEEEEe---cCCcce-eEEEECCCCCEEEEEcCC------CeEEEEEcCcc
Confidence 34666666642 367778877665222111 111111 122222 34567776653 45888888765
Q ss_pred cEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEEC-CEEE
Q 005493 235 TWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCG-TKWY 313 (694)
Q Consensus 235 ~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~-~~iy 313 (694)
.....- . .....-.++....+..+++.|+.+ ..+.+||+.+......-. .....-.++.... +.++
T Consensus 84 ~~~~~~---~-~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l 150 (289)
T cd00200 84 ECVRTL---T-GHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTTLR----GHTDWVNSVAFSPDGTFV 150 (289)
T ss_pred cceEEE---e-ccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEEec----cCCCcEEEEEEcCcCCEE
Confidence 322211 0 111122333444443356665533 358999987544332211 1111122333333 4444
Q ss_pred EEcCCCCCCCcCeEEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 314 IAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 314 V~GG~~~~~~~~~v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
+.|+.++ .+.+||+.+..-.... .. .........+.. + +..+++|+.+ ..+.+||+....
T Consensus 151 ~~~~~~~-----~i~i~d~~~~~~~~~~--~~----~~~~i~~~~~~~-~-~~~l~~~~~~----~~i~i~d~~~~~ 210 (289)
T cd00200 151 ASSSQDG-----TIKLWDLRTGKCVATL--TG----HTGEVNSVAFSP-D-GEKLLSSSSD----GTIKLWDLSTGK 210 (289)
T ss_pred EEEcCCC-----cEEEEEccccccceeE--ec----CccccceEEECC-C-cCEEEEecCC----CcEEEEECCCCc
Confidence 4444233 4889998754322211 10 111222233332 2 2244555542 368888887644
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=88.49 E-value=67 Score=39.00 Aligned_cols=141 Identities=9% Similarity=0.130 Sum_probs=70.1
Q ss_pred CEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEE--CCeEEEEccccCCCccccceEEeeCCCC
Q 005493 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (694)
Q Consensus 157 ~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 234 (694)
+..++.|+.+ ..+..||..+.+....-. .....-.+++.. ++.+++.||.++ .+.+||+.+.
T Consensus 545 ~~~las~~~D------g~v~lWd~~~~~~~~~~~----~H~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~ 608 (793)
T PLN00181 545 KSQVASSNFE------GVVQVWDVARSQLVTEMK----EHEKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQG 608 (793)
T ss_pred CCEEEEEeCC------CeEEEEECCCCeEEEEec----CCCCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCC
Confidence 4556666653 278888988765332110 111112233332 467888887653 3778888665
Q ss_pred cEE-EcccCCCCCCCcceeEEEEE-CCcEEEEEcCCCCCCCCCeEEEEEcCCCc--EEEeeccCCCCCCCcceEEEEECC
Q 005493 235 TWL-PLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSPRAGCCGVLCGT 310 (694)
Q Consensus 235 ~W~-~l~~~g~~P~~R~~hs~~~~-~~~~lyv~GG~~~~~~~~dv~~yd~~t~~--W~~l~~~~~~p~~R~~~sav~~~~ 310 (694)
.-. .+. .... ..++... .+..++++|+.++ .+.+||+.+.. ...+.. ....-.++...++
T Consensus 609 ~~~~~~~----~~~~--v~~v~~~~~~g~~latgs~dg-----~I~iwD~~~~~~~~~~~~~-----h~~~V~~v~f~~~ 672 (793)
T PLN00181 609 VSIGTIK----TKAN--ICCVQFPSESGRSLAFGSADH-----KVYYYDLRNPKLPLCTMIG-----HSKTVSYVRFVDS 672 (793)
T ss_pred cEEEEEe----cCCC--eEEEEEeCCCCCEEEEEeCCC-----eEEEEECCCCCccceEecC-----CCCCEEEEEEeCC
Confidence 422 221 0111 1122221 2233677777653 58999987543 222211 1111122223366
Q ss_pred EEEEEcCCCCCCCcCeEEEEECCC
Q 005493 311 KWYIAGGGSRKKRHAETLIFDILK 334 (694)
Q Consensus 311 ~iyV~GG~~~~~~~~~v~~yd~~t 334 (694)
..++.|+.++ .+.+||+..
T Consensus 673 ~~lvs~s~D~-----~ikiWd~~~ 691 (793)
T PLN00181 673 STLVSSSTDN-----TLKLWDLSM 691 (793)
T ss_pred CEEEEEECCC-----EEEEEeCCC
Confidence 6677777654 377888764
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.37 E-value=8.2 Score=42.64 Aligned_cols=114 Identities=21% Similarity=0.264 Sum_probs=63.2
Q ss_pred EECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCC
Q 005493 205 RASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET 284 (694)
Q Consensus 205 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t 284 (694)
..+|+|+.+|+..+ .+-+||..+..--..-..-..|.-+.. .+..++. ++++|+.+.- +-.+|+.+
T Consensus 77 R~DG~LlaaGD~sG------~V~vfD~k~r~iLR~~~ah~apv~~~~--f~~~d~t-~l~s~sDd~v-----~k~~d~s~ 142 (487)
T KOG0310|consen 77 RSDGRLLAAGDESG------HVKVFDMKSRVILRQLYAHQAPVHVTK--FSPQDNT-MLVSGSDDKV-----VKYWDLST 142 (487)
T ss_pred ecCCeEEEccCCcC------cEEEeccccHHHHHHHhhccCceeEEE--ecccCCe-EEEecCCCce-----EEEEEcCC
Confidence 34799999997554 488899655321111000122222211 1233444 8888876542 55666666
Q ss_pred CcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCC-cEEE
Q 005493 285 MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG-EWSV 339 (694)
Q Consensus 285 ~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~-~W~~ 339 (694)
..- .....+..-.-|++. ....++.|++.||+++. +..||+.+. .|..
T Consensus 143 a~v-~~~l~~htDYVR~g~-~~~~~~hivvtGsYDg~-----vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 143 AYV-QAELSGHTDYVRCGD-ISPANDHIVVTGSYDGK-----VRLWDTRSLTSRVV 191 (487)
T ss_pred cEE-EEEecCCcceeEeec-cccCCCeEEEecCCCce-----EEEEEeccCCceeE
Confidence 653 333332222223322 22347899999999986 788888776 5543
|
|
| >KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.32 E-value=2.6 Score=37.00 Aligned_cols=84 Identities=31% Similarity=0.438 Sum_probs=60.3
Q ss_pred HhhHHHHhhhhHHHHhhHHHHHHHHHH---HHHHHHHHHH-----HHhhhhH---hHhhhcccccccccCCccch---hh
Q 005493 593 LVNREAAEKNFSSVLKSRQEMEKKLAD---SLKEMELLKE-----KLAGLEL---AQEEANSLSNIVHSDNVRLE---HD 658 (694)
Q Consensus 593 ~~~~~~~e~~~~~~~~~~~~~e~~~~~---~~~~~~~l~~-----k~~~~~~---~~e~~~~~~~~~~~~~~~~~---~~ 658 (694)
.....+.+|+++.-..+||++|..|+. +++|.++|.+ ||-|--+ .+|||+. | | -.||| .|
T Consensus 11 ~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~--n-V---~kRlefI~~E 84 (120)
T KOG3478|consen 11 ANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEART--N-V---GKRLEFISKE 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHh--h-H---HHHHHHHHHH
Confidence 344556688999999999999999984 6677777765 4433222 2344432 1 1 13666 78
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhh
Q 005493 659 VAFLKAVLDDTQKVNCSYYTQLMH 682 (694)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~ 682 (694)
++-+-+-+.|.|||+...|+.+|.
T Consensus 85 ikr~e~~i~d~q~e~~k~R~~v~k 108 (120)
T KOG3478|consen 85 IKRLENQIRDSQEEFEKQREAVIK 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999885
|
|
| >KOG3215 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.25 E-value=7.3 Score=38.22 Aligned_cols=80 Identities=25% Similarity=0.363 Sum_probs=63.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhhhHh---HhhhcccccccccCCccchh--hHHHHHHHHhhhhhhhhhhhhhhh
Q 005493 607 LKSRQEMEKKLADSLKEMELLKEKLAGLELA---QEEANSLSNIVHSDNVRLEH--DVAFLKAVLDDTQKVNCSYYTQLM 681 (694)
Q Consensus 607 ~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~---~e~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 681 (694)
-+-+.|+|.+.+.+-.++|.||..|+.++.. ++|+-.|++.+..---|-|. ++-=||-+|++..-+..|+-..|+
T Consensus 95 ~q~k~Eiersi~~a~~kie~lkkql~eaKi~r~nrqe~~~l~kvis~~p~RsEt~k~l~el~keleel~~~~~s~~~kle 174 (222)
T KOG3215|consen 95 VQKKLEIERSIQKARNKIELLKKQLHEAKIVRLNRQEYSALSKVISDCPARSETDKDLNELKKELEELDDLNNSTETKLE 174 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3456677888888888999999999998874 59999999999888888884 466788888888888888877777
Q ss_pred hhhhh
Q 005493 682 HEFLH 686 (694)
Q Consensus 682 ~~~~~ 686 (694)
.-+.|
T Consensus 175 lrRkq 179 (222)
T KOG3215|consen 175 LRRKQ 179 (222)
T ss_pred HHhhc
Confidence 65544
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=88.20 E-value=42 Score=36.26 Aligned_cols=250 Identities=16% Similarity=0.164 Sum_probs=116.7
Q ss_pred EEcCCCCCCCcCc--EEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEEEC
Q 005493 103 VVGGESGNGLLDD--VQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT 180 (694)
Q Consensus 103 v~GG~~~~~~~~~--v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~ 180 (694)
++|++.. +.... ++.||..+.++..+..... ... + ...+.-.-++.||+..... .....-..|.++.
T Consensus 3 ~vgsy~~-~~~~gI~~~~~d~~~g~l~~~~~~~~-------~~~-P-s~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~ 71 (345)
T PF10282_consen 3 YVGSYTN-GKGGGIYVFRFDEETGTLTLVQTVAE-------GEN-P-SWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDP 71 (345)
T ss_dssp EEEECCS-SSSTEEEEEEEETTTTEEEEEEEEEE-------SSS-E-CCEEE-TTSSEEEEEETTS-STTTEEEEEEEET
T ss_pred EEEcCCC-CCCCcEEEEEEcCCCCCceEeeeecC-------CCC-C-ceEEEEeCCCEEEEEEccc-cCCCCEEEEEECC
Confidence 3455543 22233 4556668899988765210 001 1 1111111356788875432 1222234555555
Q ss_pred CCCcEEEeeecCCCC-Ccce-eeEEEEECC-eEEEEccccCCCccccceEEeeCCCCc-EEEc------ccCCCC---CC
Q 005493 181 ETECWSVVEAKGDIP-VARS-GHTVVRASS-VLILFGGEDGKRRKLNDLHMFDLKSLT-WLPL------HCTGTG---PS 247 (694)
Q Consensus 181 ~t~~W~~~~~~g~~p-~~R~-~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~l------~~~g~~---P~ 247 (694)
.+++.+.+.. .+ .... +|.++.-++ .||+. -+. ...+.+|++..+. -... ...|+- ..
T Consensus 72 ~~g~L~~~~~---~~~~g~~p~~i~~~~~g~~l~va-ny~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~ 142 (345)
T PF10282_consen 72 DTGTLTLLNS---VPSGGSSPCHIAVDPDGRFLYVA-NYG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQE 142 (345)
T ss_dssp TTTEEEEEEE---EEESSSCEEEEEECTTSSEEEEE-ETT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTS
T ss_pred CcceeEEeee---eccCCCCcEEEEEecCCCEEEEE-Ecc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccc
Confidence 5578877763 33 2222 232222233 45553 222 2457777776642 2111 101121 12
Q ss_pred CcceeEEEEECC-cEEEEEcCCCCCCCCCeEEEEEcCCCc--EEEeeccCCCCCC-CcceEEEEE-CCEEEEEcCCCCCC
Q 005493 248 PRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMI--WTRIKIRGFHPSP-RAGCCGVLC-GTKWYIAGGGSRKK 322 (694)
Q Consensus 248 ~R~~hs~~~~~~-~~lyv~GG~~~~~~~~dv~~yd~~t~~--W~~l~~~~~~p~~-R~~~sav~~-~~~iyV~GG~~~~~ 322 (694)
.-.-|.+....+ +.+|+.. . -.+.|++|++.... ........ .|.+ --.|.+..- +..+||+.-.+.
T Consensus 143 ~~h~H~v~~~pdg~~v~v~d-l----G~D~v~~~~~~~~~~~l~~~~~~~-~~~G~GPRh~~f~pdg~~~Yv~~e~s~-- 214 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPD-L----GADRVYVYDIDDDTGKLTPVDSIK-VPPGSGPRHLAFSPDGKYAYVVNELSN-- 214 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEE-T----TTTEEEEEEE-TTS-TEEEEEEEE-CSTTSSEEEEEE-TTSSEEEEEETTTT--
T ss_pred cccceeEEECCCCCEEEEEe-c----CCCEEEEEEEeCCCceEEEeeccc-cccCCCCcEEEEcCCcCEEEEecCCCC--
Confidence 233466666644 5566642 1 13568899887665 65533221 1221 112332222 467899987554
Q ss_pred CcCeEEEEECC--CCcEEEeecCCCC--CCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECcc
Q 005493 323 RHAETLIFDIL--KGEWSVAITSPSS--SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEK 388 (694)
Q Consensus 323 ~~~~v~~yd~~--t~~W~~l~~~~~~--~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~ 388 (694)
.+.+|+.. +..|+.+...+.. ........+.+.+ .++..+||+.--. .+.|.+|++..
T Consensus 215 ---~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i-spdg~~lyvsnr~----~~sI~vf~~d~ 276 (345)
T PF10282_consen 215 ---TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAI-SPDGRFLYVSNRG----SNSISVFDLDP 276 (345)
T ss_dssp ---EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE--TTSSEEEEEECT----TTEEEEEEECT
T ss_pred ---cEEEEeecccCCceeEEEEeeeccccccccCCceeEEE-ecCCCEEEEEecc----CCEEEEEEEec
Confidence 46565555 6666655432221 1222223334444 3455577774322 45788888843
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=87.85 E-value=4.2 Score=46.19 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=38.7
Q ss_pred hhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005493 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAG 633 (694)
Q Consensus 571 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~ 633 (694)
-+++...|++.+..|++++.......+.++..|+..-++-++++.+........+.|+++...
T Consensus 148 ~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~ 210 (546)
T PF07888_consen 148 CQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERES 210 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888888888877666666666666666555555555444444444444433333
|
This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region []. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=87.48 E-value=48 Score=36.13 Aligned_cols=201 Identities=15% Similarity=0.154 Sum_probs=100.3
Q ss_pred EEECCEEEEEcCCCCCCCcCcEEEEECCCCc--EEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCc
Q 005493 95 AVIGNKMIVVGGESGNGLLDDVQVLNFDRFS--WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDR 172 (694)
Q Consensus 95 ~~~~~~lyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~ 172 (694)
+..++++|+.. .. ..++.+|+.+.. |+...... ... ........+++||+-....
T Consensus 65 ~~~dg~v~~~~-~~-----G~i~A~d~~~g~~~W~~~~~~~----------~~~-~~~~~~~~~G~i~~g~~~g------ 121 (370)
T COG1520 65 ADGDGTVYVGT-RD-----GNIFALNPDTGLVKWSYPLLGA----------VAQ-LSGPILGSDGKIYVGSWDG------ 121 (370)
T ss_pred EeeCCeEEEec-CC-----CcEEEEeCCCCcEEecccCcCc----------cee-ccCceEEeCCeEEEecccc------
Confidence 66678888861 11 178999999975 97655410 000 1111122267766543321
Q ss_pred cEEEEEECCC--CcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCC--cEEEcccCCCCCCC
Q 005493 173 VSVWTFDTET--ECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSL--TWLPLHCTGTGPSP 248 (694)
Q Consensus 173 ~~v~~yd~~t--~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~W~~l~~~g~~P~~ 248 (694)
.+++||..+ ..|+.-... . .+.....++.++.+|+.- ..+.++.+|..+. .|+.-...+ .+.
T Consensus 122 -~~y~ld~~~G~~~W~~~~~~---~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~~~- 187 (370)
T COG1520 122 -KLYALDASTGTLVWSRNVGG---S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-LSL- 187 (370)
T ss_pred -eEEEEECCCCcEEEEEecCC---C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-ccc-
Confidence 899999964 458765431 1 444444444555666542 1356888888755 487443211 222
Q ss_pred cceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCC--cEEEeeccCCCCCCCcce--EEEEECCEEEEEcCCCCCCCc
Q 005493 249 RSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM--IWTRIKIRGFHPSPRAGC--CGVLCGTKWYIAGGGSRKKRH 324 (694)
Q Consensus 249 R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~--~W~~l~~~~~~p~~R~~~--sav~~~~~iyV~GG~~~~~~~ 324 (694)
+.....+ +.+..+|+ |..+ . ...++.+|++++ .|..-... +..+..- ...+.+..||+-||.......
T Consensus 188 ~~~~~~~-~~~~~vy~-~~~~--~-~~~~~a~~~~~G~~~w~~~~~~---~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~ 259 (370)
T COG1520 188 SIYGSPA-IASGTVYV-GSDG--Y-DGILYALNAEDGTLKWSQKVSQ---TIGRTAISTTPAVDGGPVYVDGGVYAGSYG 259 (370)
T ss_pred ccccCce-eecceEEE-ecCC--C-cceEEEEEccCCcEeeeeeeec---ccCcccccccccccCceEEECCcEEEEecC
Confidence 2222222 44442444 4332 1 226999999765 47743221 1111111 122224444444442111112
Q ss_pred CeEEEEECCCC--cEEEe
Q 005493 325 AETLIFDILKG--EWSVA 340 (694)
Q Consensus 325 ~~v~~yd~~t~--~W~~l 340 (694)
..++++|..+. .|+.-
T Consensus 260 g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 260 GKLLCLDADTGELIWSFP 277 (370)
T ss_pred CeEEEEEcCCCceEEEEe
Confidence 24778887764 47753
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=87.27 E-value=59 Score=37.02 Aligned_cols=147 Identities=15% Similarity=0.096 Sum_probs=69.7
Q ss_pred CccEEEEEECCCCc--EEEeeecCCCCCcceee--EEEE---ECC---eEEEEccccCCCccccceEEeeCCCCc--EEE
Q 005493 171 DRVSVWTFDTETEC--WSVVEAKGDIPVARSGH--TVVR---ASS---VLILFGGEDGKRRKLNDLHMFDLKSLT--WLP 238 (694)
Q Consensus 171 ~~~~v~~yd~~t~~--W~~~~~~g~~p~~R~~~--~~~~---~~~---~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~ 238 (694)
..+.++.+|.++++ |+.-....+....+... .+.. +++ .++++|..+ ..++.+|..+.+ |+.
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~------G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN------GFFYVLDRTTGKLISAR 327 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC------ceEEEEECCCCcEeeEe
Confidence 34579999999865 87532111111001111 1111 222 244444432 348999998876 875
Q ss_pred cccCCCCCCCcceeEEEEECCcEEEEEcCCC------------CCCCCCeEEEEEcCCCc--EEEeeccCC-C---CCCC
Q 005493 239 LHCTGTGPSPRSNHVAALYDDKNLLIFGGSS------------KSKTLNDLYSLDFETMI--WTRIKIRGF-H---PSPR 300 (694)
Q Consensus 239 l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~------------~~~~~~dv~~yd~~t~~--W~~l~~~~~-~---p~~R 300 (694)
-... . .++... ..+|+-.... .......++.+|..+++ |+.-..... . ..+.
T Consensus 328 ~~~~--~-------~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~ 397 (488)
T cd00216 328 PEVE--Q-------PMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPH 397 (488)
T ss_pred Eeec--c-------ccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcc
Confidence 4210 0 111111 3245422110 01123468999988654 776432000 0 0112
Q ss_pred cceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCc--EEE
Q 005493 301 AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE--WSV 339 (694)
Q Consensus 301 ~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~--W~~ 339 (694)
.....++.++.||+ |..++ .++.||.++.+ |+.
T Consensus 398 ~~~~~~~~g~~v~~-g~~dG-----~l~ald~~tG~~lW~~ 432 (488)
T cd00216 398 WGGSLATAGNLVFA-GAADG-----YFRAFDATTGKELWKF 432 (488)
T ss_pred cCcceEecCCeEEE-ECCCC-----eEEEEECCCCceeeEE
Confidence 22233444555444 44443 49999998864 774
|
The alignment model contains an 8-bladed beta-propeller. |
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=87.21 E-value=40 Score=34.93 Aligned_cols=191 Identities=13% Similarity=0.037 Sum_probs=97.6
Q ss_pred CCEEEEEccccCCCCCccEEEEEE----CCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeC
Q 005493 156 GKKVLLVGGKTDSGSDRVSVWTFD----TETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDL 231 (694)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yd----~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~ 231 (694)
++++|++.+.. ...+.++.|. +....+...- .+|.+-.+.+.++++|.+|..-. ..+.+.+||+
T Consensus 34 ~~~~wv~~~~~---~~~~~v~ey~~~~~f~~~~~~~~~---~Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL 101 (255)
T smart00284 34 KSLYWYMPLNT---RVLRSVREYSSMSDFQMGKNPTDH---PLPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDL 101 (255)
T ss_pred CceEEEEcccc---CCCcEEEEecCHHHHhccCCceEE---ECCCccccccEEEECceEEEEec------CCccEEEEEC
Confidence 46788886653 2234677774 2234443322 37877888888999999998643 2467999999
Q ss_pred CCCcEEEcccCCCCCCCcc---------ee---EEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCC
Q 005493 232 KSLTWLPLHCTGTGPSPRS---------NH---VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP 299 (694)
Q Consensus 232 ~t~~W~~l~~~g~~P~~R~---------~h---s~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~ 299 (694)
.+..-.... .+|.+.+ ++ =.++-.+...+|+......+ .--|-++|+.+-.-...-.. ..+.
T Consensus 102 ~t~~v~~~~---~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g-~ivvSkLnp~tL~ve~tW~T-~~~k- 175 (255)
T smart00284 102 TTETYQKEP---LLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG-KIVISKLNPATLTIENTWIT-TYNK- 175 (255)
T ss_pred CCCcEEEEE---ecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC-CEEEEeeCcccceEEEEEEc-CCCc-
Confidence 998764332 2332211 11 12333344223333322111 11245677766443333222 1122
Q ss_pred CcceEEEEECCEEEEEcCCCCCCCcCe-EEEEECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEE
Q 005493 300 RAGCCGVLCGTKWYIAGGGSRKKRHAE-TLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAF 370 (694)
Q Consensus 300 R~~~sav~~~~~iyV~GG~~~~~~~~~-v~~yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~ 370 (694)
+....+.++-|.+|++-.... .... .+.||+.+.+=..+. . ..+.....++++-..+ ....||+.
T Consensus 176 ~sa~naFmvCGvLY~~~s~~~--~~~~I~yayDt~t~~~~~~~-i--~f~n~y~~~s~l~YNP-~d~~LY~w 241 (255)
T smart00284 176 RSASNAFMICGILYVTRSLGS--KGEKVFYAYDTNTGKEGHLD-I--PFENMYEYISMLDYNP-NDRKLYAW 241 (255)
T ss_pred ccccccEEEeeEEEEEccCCC--CCcEEEEEEECCCCccceee-e--eeccccccceeceeCC-CCCeEEEE
Confidence 333344555688998863211 1123 479999887633321 1 2223333444444433 33466654
|
|
| >KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.19 E-value=2 Score=48.58 Aligned_cols=48 Identities=33% Similarity=0.353 Sum_probs=38.8
Q ss_pred hhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhh
Q 005493 594 VNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA 641 (694)
Q Consensus 594 ~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~ 641 (694)
..+-++|.-|.--+-+++++|.++=+.+.|+-.||.|++++|++|-|.
T Consensus 153 ~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~ 200 (861)
T KOG1899|consen 153 NKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNET 200 (861)
T ss_pred hhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhH
Confidence 344455666666678899999999999999999999999999888443
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=87.03 E-value=54 Score=36.34 Aligned_cols=247 Identities=12% Similarity=0.066 Sum_probs=120.3
Q ss_pred CCCceEEeeccCCCCCCccceEEEEE---CCEEEEEcCCCCCCCcCcEEEEECC--CCcEEEcccccccCCCCCCCCCCC
Q 005493 72 NSENWMVLSIAGDKPIPRFNHAAAVI---GNKMIVVGGESGNGLLDDVQVLNFD--RFSWTAASSKLYLSPSSLPLKIPA 146 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~~R~~hs~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~~p~~~~~~~p~ 146 (694)
....|+++.. +....+.-..+.++ .+.-|++|-.. .++... -.+|........ .....
T Consensus 73 ~G~~W~q~~~--p~~~~~~L~~V~F~~~d~~~GwAVG~~G--------~IL~T~DGG~tW~~~~~~~~-------~~~~~ 135 (398)
T PLN00033 73 QSSEWEQVDL--PIDPGVVLLDIAFVPDDPTHGFLLGTRQ--------TLLETKDGGKTWVPRSIPSA-------EDEDF 135 (398)
T ss_pred CCCccEEeec--CCCCCCceEEEEeccCCCCEEEEEcCCC--------EEEEEcCCCCCceECccCcc-------ccccc
Confidence 5668999863 11122344555552 34688888522 234333 458998643100 01111
Q ss_pred -ccceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEEC-CeEEEEccccCCCcccc
Q 005493 147 -CRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRRKLN 224 (694)
Q Consensus 147 -r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~-~~lyv~GG~~~~~~~~~ 224 (694)
....++...++..|++|-.. .++.-+-.-.+|+.++....+|... +....++ +.++++|.. .
T Consensus 136 ~~~l~~v~f~~~~g~~vG~~G-------~il~T~DgG~tW~~~~~~~~~p~~~--~~i~~~~~~~~~ivg~~-------G 199 (398)
T PLN00033 136 NYRFNSISFKGKEGWIIGKPA-------ILLHTSDGGETWERIPLSPKLPGEP--VLIKATGPKSAEMVTDE-------G 199 (398)
T ss_pred ccceeeeEEECCEEEEEcCce-------EEEEEcCCCCCceECccccCCCCCc--eEEEEECCCceEEEecc-------c
Confidence 12344455577888886431 3444444568899886432333332 2233343 567777732 2
Q ss_pred ceEEeeCCCCcEEEcccCC-C--------------CCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCC-cEE
Q 005493 225 DLHMFDLKSLTWLPLHCTG-T--------------GPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETM-IWT 288 (694)
Q Consensus 225 ~v~~yd~~t~~W~~l~~~g-~--------------~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~-~W~ 288 (694)
.+++-+-.-.+|+.+.... + .+..-..+++....+..++++|-.. .+++-+.... .|+
T Consensus 200 ~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G------~~~~s~d~G~~~W~ 273 (398)
T PLN00033 200 AIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG------NFYLTWEPGQPYWQ 273 (398)
T ss_pred eEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc------cEEEecCCCCcceE
Confidence 2555444456798762110 0 0111112233333444356665432 2454443344 489
Q ss_pred EeeccCCCCCCCcceEEEE-ECCEEEEEcCCCCCCCcCeEEEEECCCCc-----EEEeecCCCCCCCCCcCcEEEEEeec
Q 005493 289 RIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDILKGE-----WSVAITSPSSSVTSNKGFTLVLVQHK 362 (694)
Q Consensus 289 ~l~~~~~~p~~R~~~sav~-~~~~iyV~GG~~~~~~~~~v~~yd~~t~~-----W~~l~~~~~~~p~~r~~~s~~~v~~~ 362 (694)
.+.. |.++...++.. .++.++++|... .++.-+..... |..++. +..+.....+...
T Consensus 274 ~~~~----~~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~f~~~~~-----~~~~~~l~~v~~~-- 336 (398)
T PLN00033 274 PHNR----ASARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEEDFDFEEADI-----KSRGFGILDVGYR-- 336 (398)
T ss_pred EecC----CCccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccccceeeccc-----CCCCcceEEEEEc--
Confidence 8865 33444444433 377888877532 24444444443 444321 1122333333333
Q ss_pred CCcEEEEEcCCC
Q 005493 363 EKDFLVAFGGIK 374 (694)
Q Consensus 363 ~~~~i~v~GG~~ 374 (694)
+.+.++++|..+
T Consensus 337 ~d~~~~a~G~~G 348 (398)
T PLN00033 337 SKKEAWAAGGSG 348 (398)
T ss_pred CCCcEEEEECCC
Confidence 345788888764
|
|
| >PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor [] | Back alignment and domain information |
|---|
Probab=87.02 E-value=7 Score=32.79 Aligned_cols=70 Identities=24% Similarity=0.360 Sum_probs=49.9
Q ss_pred HHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhh
Q 005493 589 LAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDD 668 (694)
Q Consensus 589 l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (694)
|++.-+.-+..-+..++.-..++++|.|++.-+.|++.++.||-.||.++...-. .-|.|++-||+-|+.
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~----------~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQ----------QYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh
Confidence 3444444455555555555589999999999999999999999999998743221 227777777776653
|
; PDB: 3VP9_B 3VP8_B. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=86.66 E-value=59 Score=36.35 Aligned_cols=189 Identities=8% Similarity=0.001 Sum_probs=94.0
Q ss_pred CcEEEEECCCCcEEEcccccccCCCCCCCCCCCccceEEEEEC-CEEEEEccccCCCCCccEEEEEECCCCcEEEeeecC
Q 005493 114 DDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWG-KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKG 192 (694)
Q Consensus 114 ~~v~~yd~~t~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~-~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g 192 (694)
..++++|+.++.-+.+... +.........-+ .+|++..... ...++|.+|+.+++...+...
T Consensus 223 ~~i~i~dl~~G~~~~l~~~------------~~~~~~~~~SPDG~~La~~~~~~----g~~~I~~~d~~tg~~~~lt~~- 285 (429)
T PRK03629 223 SALVIQTLANGAVRQVASF------------PRHNGAPAFSPDGSKLAFALSKT----GSLNLYVMDLASGQIRQVTDG- 285 (429)
T ss_pred cEEEEEECCCCCeEEccCC------------CCCcCCeEECCCCCEEEEEEcCC----CCcEEEEEECCCCCEEEccCC-
Confidence 4577778777665555431 111111112223 4555543221 123699999999888776521
Q ss_pred CCCCcceeeEEEE-ECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCC
Q 005493 193 DIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS 271 (694)
Q Consensus 193 ~~p~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~ 271 (694)
+.. . ..... -+++.++|...... ...+|.+|+.+....++...+ .........-+++.|++.+....
T Consensus 286 --~~~-~-~~~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g- 353 (429)
T PRK03629 286 --RSN-N-TEPTWFPDSQNLAYTSDQAG---RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG- 353 (429)
T ss_pred --CCC-c-CceEECCCCCEEEEEeCCCC---CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC-
Confidence 111 1 11122 24554444332211 247999999888777664221 11111112224453444433222
Q ss_pred CCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCcEEEe
Q 005493 272 KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (694)
Q Consensus 272 ~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l 340 (694)
...++++|+.++.++.+.... ........-+++.+++.+..+. ...+++.+++...=..+
T Consensus 354 --~~~I~~~dl~~g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~~~~--~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 354 --QQHIAKQDLATGGVQVLTDTF-----LDETPSIAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARL 413 (429)
T ss_pred --CceEEEEECCCCCeEEeCCCC-----CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCCCeEEC
Confidence 246999999999988876421 1111112235666666654433 23466777755443444
|
|
| >PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules | Back alignment and domain information |
|---|
Probab=86.66 E-value=5.7 Score=39.70 Aligned_cols=122 Identities=23% Similarity=0.269 Sum_probs=64.3
Q ss_pred chhhhhhHHHHHHHHhhc----hhhHHHHHHHhhHHHHhhhhHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005493 566 SIYQFYESKMAALIRKNG----ILEGQLAAALVNREAAEKNFSSV-------LKSRQEMEKKLADSLKEMELLKEKLAGL 634 (694)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~----~l~~~l~~~~~~~~~~e~~~~~~-------~~~~~~~e~~~~~~~~~~~~l~~k~~~~ 634 (694)
.|-.-||+.++++|.+.. ..+.++..+++.+++|-.+|.++ ++..+.+..-+...-+--|.||..++..
T Consensus 44 ~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey 123 (207)
T PF05010_consen 44 KIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEY 123 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 355688888888887653 33444555666666666666554 3333322222222222222222222111
Q ss_pred h---------------HhH---hhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhhhhhhhhhhhh-hhhh
Q 005493 635 E---------------LAQ---EEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSYYTQLMHEFLH-DELA 690 (694)
Q Consensus 635 ~---------------~~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 690 (694)
+ -|. +.||..=.-|. -..+.|++-|.|.|.-.|..++|.-..|-..-.+ +||.
T Consensus 124 ~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~---~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELt 195 (207)
T PF05010_consen 124 EERLKKEEQRYQALKAHAEEKLEKANEEIAQVR---SKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELT 195 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011 11221111111 1245789999999999999999998887654443 3443
|
The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) []. |
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
Probab=86.54 E-value=4 Score=46.34 Aligned_cols=62 Identities=23% Similarity=0.205 Sum_probs=30.3
Q ss_pred HHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 574 ~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
+.+.+.++-..|+.+++.+....+.++|....+=+...+.+..|..+.-++..+|.+.+.+|
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le 168 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALE 168 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 33444445555666666666655555555555544444444444444444444444444443
|
|
| >PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=86.26 E-value=4.5 Score=41.84 Aligned_cols=96 Identities=20% Similarity=0.234 Sum_probs=46.7
Q ss_pred hhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhh--------hc
Q 005493 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEE--------AN 642 (694)
Q Consensus 571 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~--------~~ 642 (694)
.++++..+-.++..|.+++....+..+..+. ..+++++.++...++++.|+++++.++..+.+ ..
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~-------~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~ 112 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEV-------YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333333333 33333444444444444444444444433332 24
Q ss_pred ccccccccCCccchh----hHHHHHHHHhhhhhhh
Q 005493 643 SLSNIVHSDNVRLEH----DVAFLKAVLDDTQKVN 673 (694)
Q Consensus 643 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 673 (694)
.|...|..|-.=+.. =+++|++.|++.+=-+
T Consensus 113 ~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~ 147 (251)
T PF11932_consen 113 ELEQFVELDLPFLLEERQERLARLRAMLDDADVSL 147 (251)
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHhhhccCCCH
Confidence 466777776644443 2788888888775433
|
However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such. |
| >PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] | Back alignment and domain information |
|---|
Probab=86.24 E-value=4.7 Score=47.54 Aligned_cols=62 Identities=23% Similarity=0.232 Sum_probs=47.7
Q ss_pred Cchh-hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHH
Q 005493 565 SSIY-QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMEL 626 (694)
Q Consensus 565 ~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~ 626 (694)
+|+. .-..+++.-+--+...|-.||+.|+++++-|||+|.-+|++-+.=-+.+...-||...
T Consensus 119 sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 119 SQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4553 6778899999999999999999999999999999999998866443333333444433
|
Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus |
| >PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes | Back alignment and domain information |
|---|
Probab=86.21 E-value=32 Score=35.42 Aligned_cols=130 Identities=16% Similarity=0.203 Sum_probs=65.4
Q ss_pred CCCceEEeeccCCCCC-------CccceEEEEECCEEEEEcCCCCCCCcCcE--EEE-----ECCCCcEEEcccccccCC
Q 005493 72 NSENWMVLSIAGDKPI-------PRFNHAAAVIGNKMIVVGGESGNGLLDDV--QVL-----NFDRFSWTAASSKLYLSP 137 (694)
Q Consensus 72 ~t~~W~~l~~~~~~P~-------~R~~hs~~~~~~~lyv~GG~~~~~~~~~v--~~y-----d~~t~~W~~~~~~~~~~p 137 (694)
....|+.-... ..|. .-.-|+.+.+++.=|.+|=.+++-....+ ..| ++....=+.++..
T Consensus 113 ~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~se----- 186 (367)
T PF12217_consen 113 HDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVRRIIPSE----- 186 (367)
T ss_dssp TTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EEEE--GG-----
T ss_pred ccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceeeeechhh-----
Confidence 67788765432 2222 34568888898888888744333322222 112 1111122333331
Q ss_pred CCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCccee--eEEEEECCeEEEEcc
Q 005493 138 SSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSG--HTVVRASSVLILFGG 215 (694)
Q Consensus 138 ~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~--~~~~~~~~~lyv~GG 215 (694)
-.+...-.|+-.+++.+|+.--...+...-+.+.+-+.....|+.+. .|..... .--+.+++.||+||-
T Consensus 187 -----y~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr----fp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 187 -----YERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR----FPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp -----G-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-----TT---SS---EEEETTEEEEEEE
T ss_pred -----hccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc----ccccccccCCCceeeCCEEEEEec
Confidence 11222345667789999998655555555668899988899999987 3432222 223567999999996
Q ss_pred c
Q 005493 216 E 216 (694)
Q Consensus 216 ~ 216 (694)
.
T Consensus 258 E 258 (367)
T PF12217_consen 258 E 258 (367)
T ss_dssp -
T ss_pred c
Confidence 5
|
This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A. |
| >PRK13169 DNA replication intiation control protein YabA; Reviewed | Back alignment and domain information |
|---|
Probab=86.09 E-value=2 Score=38.34 Aligned_cols=53 Identities=26% Similarity=0.359 Sum_probs=41.8
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhh
Q 005493 603 FSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDT 669 (694)
Q Consensus 603 ~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (694)
+..++..-.++|.++....++++.||..|+.+.+ +|.+|.-|.+-|+..|++.
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~E--------------EN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLE--------------ENTALRLENDKLRERLEEL 55 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHh
Confidence 3455666678888888888888888888888764 4888888888888888875
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=85.74 E-value=50 Score=36.46 Aligned_cols=206 Identities=18% Similarity=0.176 Sum_probs=107.2
Q ss_pred CCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEEC-CeEEEEccccCCCc-----cccceEEe
Q 005493 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRAS-SVLILFGGEDGKRR-----KLNDLHMF 229 (694)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~-~~lyv~GG~~~~~~-----~~~~v~~y 229 (694)
+++.++++=. ..+.....++++|+.+++...-. ++...... ++..+ +..+++...+.... ....++++
T Consensus 134 dg~~la~~~s-~~G~e~~~l~v~Dl~tg~~l~d~----i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 134 DGKRLAYSLS-DGGSEWYTLRVFDLETGKFLPDG----IENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp TSSEEEEEEE-ETTSSEEEEEEEETTTTEEEEEE----EEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred CCCEEEEEec-CCCCceEEEEEEECCCCcCcCCc----ccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 5666666432 23445568999999999654322 22222222 44444 35666655544322 36789999
Q ss_pred eCCCCcEE--EcccCCCCCCCcc-eeEEE-EECCcEEEEEcCCCCCCCCCeEEEEEcCCC-----cEEEeeccCCCCCCC
Q 005493 230 DLKSLTWL--PLHCTGTGPSPRS-NHVAA-LYDDKNLLIFGGSSKSKTLNDLYSLDFETM-----IWTRIKIRGFHPSPR 300 (694)
Q Consensus 230 d~~t~~W~--~l~~~g~~P~~R~-~hs~~-~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~-----~W~~l~~~~~~p~~R 300 (694)
.+.+..-. .+- ..+.+.. ...+. .-+++.++|.-.... . .+++|.+|+... .|..+... ..-
T Consensus 208 ~~gt~~~~d~lvf---e~~~~~~~~~~~~~s~d~~~l~i~~~~~~-~-~s~v~~~d~~~~~~~~~~~~~l~~~----~~~ 278 (414)
T PF02897_consen 208 KLGTPQSEDELVF---EEPDEPFWFVSVSRSKDGRYLFISSSSGT-S-ESEVYLLDLDDGGSPDAKPKLLSPR----EDG 278 (414)
T ss_dssp ETTS-GGG-EEEE---C-TTCTTSEEEEEE-TTSSEEEEEEESSS-S-EEEEEEEECCCTTTSS-SEEEEEES----SSS
T ss_pred ECCCChHhCeeEE---eecCCCcEEEEEEecCcccEEEEEEEccc-c-CCeEEEEeccccCCCcCCcEEEeCC----CCc
Confidence 98877644 221 1222222 22333 334454444333222 2 478999999875 88888652 223
Q ss_pred cceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCc---EEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCC
Q 005493 301 AGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGE---WSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP 377 (694)
Q Consensus 301 ~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~---W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~ 377 (694)
..+.+...++.+||..... .....+..+++.... |..+.. + .........+.. .+++|++.-=.+ .
T Consensus 279 ~~~~v~~~~~~~yi~Tn~~--a~~~~l~~~~l~~~~~~~~~~~l~-~-----~~~~~~l~~~~~-~~~~Lvl~~~~~--~ 347 (414)
T PF02897_consen 279 VEYYVDHHGDRLYILTNDD--APNGRLVAVDLADPSPAEWWTVLI-P-----EDEDVSLEDVSL-FKDYLVLSYREN--G 347 (414)
T ss_dssp -EEEEEEETTEEEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE--------SSSEEEEEEEE-ETTEEEEEEEET--T
T ss_pred eEEEEEccCCEEEEeeCCC--CCCcEEEEecccccccccceeEEc-C-----CCCceeEEEEEE-ECCEEEEEEEEC--C
Confidence 3334444599999988733 334578899988765 663321 1 111122222221 134555543322 2
Q ss_pred CCcEEEEECc
Q 005493 378 SNQVEVLSIE 387 (694)
Q Consensus 378 ~~~v~~~di~ 387 (694)
...+.++++.
T Consensus 348 ~~~l~v~~~~ 357 (414)
T PF02897_consen 348 SSRLRVYDLD 357 (414)
T ss_dssp EEEEEEEETT
T ss_pred ccEEEEEECC
Confidence 4488888888
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=85.63 E-value=8.4 Score=35.19 Aligned_cols=85 Identities=16% Similarity=0.226 Sum_probs=56.4
Q ss_pred EECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEe-eCC
Q 005493 154 SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMF-DLK 232 (694)
Q Consensus 154 ~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~y-d~~ 232 (694)
.++|-+|...-. .......+.+||+.+.+|+.++..............+.++|+|-++.-........=++|++ |..
T Consensus 3 cinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 3 CINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 457788877665 23345689999999999998874211224455566777889888876544321123467777 456
Q ss_pred CCcEEEcc
Q 005493 233 SLTWLPLH 240 (694)
Q Consensus 233 t~~W~~l~ 240 (694)
...|.+..
T Consensus 81 k~~Wsk~~ 88 (129)
T PF08268_consen 81 KQEWSKKH 88 (129)
T ss_pred cceEEEEE
Confidence 77899775
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins | Back alignment and domain information |
|---|
Probab=85.62 E-value=0.85 Score=43.76 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHhhchhhHHH
Q 005493 569 QFYESKMAALIRKNGILEGQL 589 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l 589 (694)
+|+|+|+.+.|.+|+.||..|
T Consensus 3 eD~EsklN~AIERnalLE~EL 23 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 689999999999999998888
|
Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B. |
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
Probab=85.55 E-value=9.5 Score=38.06 Aligned_cols=84 Identities=17% Similarity=0.250 Sum_probs=66.4
Q ss_pred CchhhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhccc
Q 005493 565 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSL 644 (694)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~ 644 (694)
.+|-.+|..=....|.--..|..|+++..+.-+..+|.++.+..+...|-+-|+.+.++.+.|+.+|+.-+..+....++
T Consensus 12 ~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~ 91 (201)
T PF13851_consen 12 QEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNL 91 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666667778999999999999999999999999999999999999999999999998887765554444
Q ss_pred cccc
Q 005493 645 SNIV 648 (694)
Q Consensus 645 ~~~~ 648 (694)
...+
T Consensus 92 k~rl 95 (201)
T PF13851_consen 92 KARL 95 (201)
T ss_pred HHHH
Confidence 4433
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.36 E-value=47 Score=33.97 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=89.3
Q ss_pred CcEEEcccccccCCCCCCCCCCCccceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEE
Q 005493 124 FSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTV 203 (694)
Q Consensus 124 ~~W~~~~~~~~~~p~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~ 203 (694)
..|+...|+.... .+.|-.....+.--.|.|+..||-. .+|..|+++++.+..- .-..-+-|++
T Consensus 99 ~lwe~~~P~~~~~-----~evPeINam~ldP~enSi~~AgGD~-------~~y~~dlE~G~i~r~~----rGHtDYvH~v 162 (325)
T KOG0649|consen 99 RLWEVKIPMQVDA-----VEVPEINAMWLDPSENSILFAGGDG-------VIYQVDLEDGRIQREY----RGHTDYVHSV 162 (325)
T ss_pred hhhhhcCccccCc-----ccCCccceeEeccCCCcEEEecCCe-------EEEEEEecCCEEEEEE----cCCcceeeee
Confidence 4687777653211 2334333334444578899998753 7999999999987653 2334466666
Q ss_pred EEEC-CeEEEEccccCCCccccceEEeeCCCCcEEEc-ccC--CCCCCCccee--EEEEECCcEEEEEcCCCCCCCCCeE
Q 005493 204 VRAS-SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL-HCT--GTGPSPRSNH--VAALYDDKNLLIFGGSSKSKTLNDL 277 (694)
Q Consensus 204 ~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l-~~~--g~~P~~R~~h--s~~~~~~~~lyv~GG~~~~~~~~dv 277 (694)
+.-+ +-=++-||.++ .+-++|..+.+-.++ .+. ...-.|-.+- .+...+.. .+|.||-. .+
T Consensus 163 v~R~~~~qilsG~EDG------tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-WlvCGgGp------~l 229 (325)
T KOG0649|consen 163 VGRNANGQILSGAEDG------TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-WLVCGGGP------KL 229 (325)
T ss_pred eecccCcceeecCCCc------cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-eEEecCCC------ce
Confidence 6533 33445566554 356778877765543 211 1122222222 44455555 67777742 35
Q ss_pred EEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEc
Q 005493 278 YSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAG 316 (694)
Q Consensus 278 ~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~G 316 (694)
-.|++...+.+.+-+ .|-.-+-+..+++.+++.|
T Consensus 230 slwhLrsse~t~vfp-----ipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 230 SLWHLRSSESTCVFP-----IPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred eEEeccCCCceEEEe-----cccceeEeeeecceEEEec
Confidence 677777777666533 3333344444566666666
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=85.27 E-value=68 Score=35.78 Aligned_cols=140 Identities=12% Similarity=0.072 Sum_probs=71.4
Q ss_pred cEEEEEECCCCcEEEeeecCCCCCcceeeEEEE-ECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcce
Q 005493 173 VSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (694)
Q Consensus 173 ~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~ 251 (694)
..++.+|+.++.-+.+.. .+.. . ...+. -+++.++++..... ..++|.+|+.+.....+.. .+. ..
T Consensus 228 ~~i~i~dl~tg~~~~l~~---~~g~-~-~~~~wSPDG~~La~~~~~~g---~~~Iy~~d~~~~~~~~lt~---~~~--~~ 294 (429)
T PRK01742 228 SQLVVHDLRSGARKVVAS---FRGH-N-GAPAFSPDGSRLAFASSKDG---VLNIYVMGANGGTPSQLTS---GAG--NN 294 (429)
T ss_pred cEEEEEeCCCCceEEEec---CCCc-c-CceeECCCCCEEEEEEecCC---cEEEEEEECCCCCeEeecc---CCC--Cc
Confidence 479999998887666542 2211 1 12222 24554444432211 1359999998888777642 111 11
Q ss_pred eEEEEE-CCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEE
Q 005493 252 HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIF 330 (694)
Q Consensus 252 hs~~~~-~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~y 330 (694)
...+.. +++.|++.....+ ..++|.++..+..-+.+.. .. ........+..|++.++ ..++.+
T Consensus 295 ~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~~-----~~-~~~~~SpDG~~ia~~~~-------~~i~~~ 358 (429)
T PRK01742 295 TEPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVGG-----RG-YSAQISADGKTLVMING-------DNVVKQ 358 (429)
T ss_pred CCEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEecC-----CC-CCccCCCCCCEEEEEcC-------CCEEEE
Confidence 122222 3443444332222 2478888877665444311 11 11111112345555544 258889
Q ss_pred ECCCCcEEEee
Q 005493 331 DILKGEWSVAI 341 (694)
Q Consensus 331 d~~t~~W~~l~ 341 (694)
|+.+..+..+.
T Consensus 359 Dl~~g~~~~lt 369 (429)
T PRK01742 359 DLTSGSTEVLS 369 (429)
T ss_pred ECCCCCeEEec
Confidence 99998887653
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=85.21 E-value=14 Score=38.39 Aligned_cols=113 Identities=18% Similarity=0.131 Sum_probs=75.5
Q ss_pred EEEE-ECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEE
Q 005493 202 TVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL 280 (694)
Q Consensus 202 ~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~y 280 (694)
+... .++.+|.--|..+. +.+.+||+.+++-.... ++|..-++=+++.++++ ||..==.+ +..++|
T Consensus 49 GL~~~~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~-l~qLTWk~-----~~~f~y 115 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ----SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDK-LYQLTWKE-----GTGFVY 115 (264)
T ss_dssp EEEEEETTEEEEEECSTTE----EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTE-EEEEESSS-----SEEEEE
T ss_pred cEEecCCCEEEEeCCCCCc----EEEEEEECCCCcEEEEE---ECCccccceeEEEECCE-EEEEEecC-----CeEEEE
Confidence 3444 56889888887653 67999999999876555 67887888899999998 77663322 358999
Q ss_pred EcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcCeEEEEECCCCcEE
Q 005493 281 DFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWS 338 (694)
Q Consensus 281 d~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~~v~~yd~~t~~W~ 338 (694)
|..+- ..+... +.+.-+.+.+..+..+|+--|. +.++.+||++..-.
T Consensus 116 d~~tl--~~~~~~---~y~~EGWGLt~dg~~Li~SDGS------~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 116 DPNTL--KKIGTF---PYPGEGWGLTSDGKRLIMSDGS------SRLYFLDPETFKEV 162 (264)
T ss_dssp ETTTT--EEEEEE---E-SSS--EEEECSSCEEEE-SS------SEEEEE-TTT-SEE
T ss_pred ccccc--eEEEEE---ecCCcceEEEcCCCEEEEECCc------cceEEECCcccceE
Confidence 98764 344332 4456788888888889998884 36999999876543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
Probab=85.20 E-value=2.2 Score=43.75 Aligned_cols=112 Identities=22% Similarity=0.222 Sum_probs=68.9
Q ss_pred hhhhHHHHHHHHhhchhhHHHHH-------HHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhh
Q 005493 569 QFYESKMAALIRKNGILEGQLAA-------ALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEA 641 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~ 641 (694)
...+.+++.+-|+...||++|+. |++.++.|+|.+...-+.+..+|.+.......++.|+.+|..+...-+++
T Consensus 32 ~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~ 111 (237)
T PF00261_consen 32 EKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEA 111 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666665555 66677777777777777777777777777778888888888777777666
Q ss_pred cccccccccCCccchhhH-------HHHHHHHhhhhhhhhhhhhhh
Q 005493 642 NSLSNIVHSDNVRLEHDV-------AFLKAVLDDTQKVNCSYYTQL 680 (694)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 680 (694)
..-.-=|..--..+|+|+ .-+-.-+.+.+.+|+.....|
T Consensus 112 e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~l 157 (237)
T PF00261_consen 112 ERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNL 157 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 643222222222234443 334444555555565555444
|
In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B .... |
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.93 E-value=4.7 Score=51.13 Aligned_cols=94 Identities=23% Similarity=0.219 Sum_probs=43.8
Q ss_pred ccccccCCCccccCCCCCCCCcCCCchhhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHH
Q 005493 541 GNFHVDNDNVIFPDNDKSGALSGPSSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADS 620 (694)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~ 620 (694)
+-.+++.|.+..+-...+|+....+.+.+.. ++..+..+-..++.++..+......++..+..+...++++...+..+
T Consensus 637 riVTl~G~~~~~~G~~tGG~~~~~~~~~~~~--~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1163)
T COG1196 637 RIVTLDGDLVEPSGSITGGSRNKRSSLAQKR--ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEEL 714 (1163)
T ss_pred eEEecCCcEEeCCeeeecCCccccchhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666655554444444433333322222 34444444455555555555555555555555544444444444444
Q ss_pred HHHHHHHHHHHhhhhH
Q 005493 621 LKEMELLKEKLAGLEL 636 (694)
Q Consensus 621 ~~~~~~l~~k~~~~~~ 636 (694)
.++++.++..++.++.
T Consensus 715 ~~~~~~~~~~~~~~~~ 730 (1163)
T COG1196 715 ERQLEELKRELAALEE 730 (1163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444443333
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.51 E-value=71 Score=35.40 Aligned_cols=144 Identities=18% Similarity=0.183 Sum_probs=71.6
Q ss_pred ceEEEEECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEE--E-ECCeEEEEccccCCCccccc
Q 005493 149 GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV--R-ASSVLILFGGEDGKRRKLND 225 (694)
Q Consensus 149 ~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~--~-~~~~lyv~GG~~~~~~~~~~ 225 (694)
-++++..+.--|++||.. ..++|++.+.++.--.+ -.+.|....+ . .++..++-||.++.
T Consensus 84 v~al~s~n~G~~l~ag~i-----~g~lYlWelssG~LL~v------~~aHYQ~ITcL~fs~dgs~iiTgskDg~------ 146 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTI-----SGNLYLWELSSGILLNV------LSAHYQSITCLKFSDDGSHIITGSKDGA------ 146 (476)
T ss_pred eeeeecCCCceEEEeecc-----cCcEEEEEeccccHHHH------HHhhccceeEEEEeCCCcEEEecCCCcc------
Confidence 467777777778887732 12788888877754221 1222322222 2 25788888887754
Q ss_pred eEEeeCCCCcEEEcccCCC-CCCCc---ceeEEEEECCcEEEE-EcCCCCCC----CCCeEEEEEcCCCcEEEeeccCCC
Q 005493 226 LHMFDLKSLTWLPLHCTGT-GPSPR---SNHVAALYDDKNLLI-FGGSSKSK----TLNDLYSLDFETMIWTRIKIRGFH 296 (694)
Q Consensus 226 v~~yd~~t~~W~~l~~~g~-~P~~R---~~hs~~~~~~~~lyv-~GG~~~~~----~~~dv~~yd~~t~~W~~l~~~~~~ 296 (694)
|.+|++.+- +....+ .|.|+ ..|++.+.+ +++ +||.+..- .=+.+-+||+..+.--. . .
T Consensus 147 V~vW~l~~l----v~a~~~~~~~p~~~f~~HtlsITD---l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl--t---i 214 (476)
T KOG0646|consen 147 VLVWLLTDL----VSADNDHSVKPLHIFSDHTLSITD---LQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL--T---I 214 (476)
T ss_pred EEEEEEEee----cccccCCCccceeeeccCcceeEE---EEecCCCccceEEEecCCceEEEEEeccceeeE--E---E
Confidence 444433110 000001 22232 245555543 333 55543221 11235667766653211 1 1
Q ss_pred CCCCcceEEEEE-CCEEEEEcCCCCC
Q 005493 297 PSPRAGCCGVLC-GTKWYIAGGGSRK 321 (694)
Q Consensus 297 p~~R~~~sav~~-~~~iyV~GG~~~~ 321 (694)
..|+.-+++++. .++.+.+|+..+.
T Consensus 215 ~fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 215 TFPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred ecCCcceeEEEcccccEEEecCCcce
Confidence 345665665554 4666777776654
|
|
| >PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication | Back alignment and domain information |
|---|
Probab=84.33 E-value=2.6 Score=37.53 Aligned_cols=54 Identities=26% Similarity=0.440 Sum_probs=37.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchhhHHHHHHHHhhhhh
Q 005493 604 SSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQK 671 (694)
Q Consensus 604 ~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (694)
..++..-.++|+++....++++.||..+..+.+ +|.+|.-|.+-|+..|++..+
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~E--------------EN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLE--------------ENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhc
Confidence 345555667777777777777777777777663 467777777777777766544
|
SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family. |
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
Probab=84.33 E-value=6.3 Score=46.73 Aligned_cols=67 Identities=21% Similarity=0.355 Sum_probs=37.0
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSR-------QEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~-------~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
+++..++..+......|..+|.......|+++..+..+.+.| ++|||||++-.+-...|+..|+...
T Consensus 442 ~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 442 QELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444445666666666666677666666663333 4566666665554444444444443
|
; GO: 0016021 integral to membrane |
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
Probab=84.29 E-value=5.3 Score=45.43 Aligned_cols=96 Identities=21% Similarity=0.220 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHH--------------HhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV--------------LKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~--------------~~~~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
-++.+|..|--+...|..+++.|+..+..+++++-.. ..-+..+|..+..+.++...|..-|+.+.
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4556666666666666666766666666666655543 44445555555555555555555555554
Q ss_pred HhHhhhcccccccccCCccchhhHHHHHHH
Q 005493 636 LAQEEANSLSNIVHSDNVRLEHDVAFLKAV 665 (694)
Q Consensus 636 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (694)
..-++.-.|.+=-+.-..-|.+|++|++-+
T Consensus 190 ~~ld~Etllr~d~~n~~q~Lleel~f~~~~ 219 (546)
T KOG0977|consen 190 KQLDDETLLRVDLQNRVQTLLEELAFLKRI 219 (546)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 444444444444444555677888888743
|
|
| >KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription] | Back alignment and domain information |
|---|
Probab=84.10 E-value=5.7 Score=45.53 Aligned_cols=54 Identities=22% Similarity=0.385 Sum_probs=45.8
Q ss_pred hhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHH
Q 005493 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEM 624 (694)
Q Consensus 571 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~ 624 (694)
-=+|+-+-++++.+|+..+.--++.++.-+..|.++|..|+++||-+...++.+
T Consensus 475 iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~ 528 (961)
T KOG4673|consen 475 IIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKH 528 (961)
T ss_pred HHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 346777788899999999999999999999999999999999999988655433
|
|
| >PRK11281 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.91 E-value=6.7 Score=48.92 Aligned_cols=106 Identities=24% Similarity=0.226 Sum_probs=74.4
Q ss_pred HHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHh-------------hHHHHHHHHHHHHHHHHHHHHHHhhh-----
Q 005493 573 SKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLK-------------SRQEMEKKLADSLKEMELLKEKLAGL----- 634 (694)
Q Consensus 573 ~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~-------------~~~~~e~~~~~~~~~~~~l~~k~~~~----- 634 (694)
.++...-++...|+++|++|-+..++|.++++..-+ +..++|.+|+....+.+.+++.+++.
T Consensus 73 ~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi 152 (1113)
T PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLV 152 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677788888888888888888888876422 23568888888888888888888877
Q ss_pred ------hHhHhh----------hcc-cccccccC-------CccchhhHHHHHHHHhhhhhhhhhhhh
Q 005493 635 ------ELAQEE----------ANS-LSNIVHSD-------NVRLEHDVAFLKAVLDDTQKVNCSYYT 678 (694)
Q Consensus 635 ------~~~~e~----------~~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (694)
|+||.. .++ |.+...++ ...|+.|.+.|+|-.+-.|+||.+...
T Consensus 153 ~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~ 220 (1113)
T PRK11281 153 SLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQ 220 (1113)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 444433 222 33322222 455688999999999999999977544
|
|
| >PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8 | Back alignment and domain information |
|---|
Probab=83.70 E-value=5.8 Score=39.15 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=29.1
Q ss_pred HHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHH-HHHHHHHHHHHHHHHHHHHhh
Q 005493 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQE-MEKKLADSLKEMELLKEKLAG 633 (694)
Q Consensus 578 ~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~-~e~~~~~~~~~~~~l~~k~~~ 633 (694)
.|.+-..+-.+|....+..++++|+..+..+..++ .+++.+...+|++.||++|+.
T Consensus 116 ~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 116 VIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 45555555555555555555555555555444443 223333444555555555555
|
Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=83.68 E-value=65 Score=34.26 Aligned_cols=139 Identities=18% Similarity=0.210 Sum_probs=78.4
Q ss_pred CEEEEEccccCCCC---Cc-cEEEEEECCCC-----cEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceE
Q 005493 157 KKVLLVGGKTDSGS---DR-VSVWTFDTETE-----CWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLH 227 (694)
Q Consensus 157 ~~Iyv~GG~~~~~~---~~-~~v~~yd~~t~-----~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~ 227 (694)
...+++|-...... .. ..++.|+.... +++.+.. .+..-.-.+++.+++++++.-| +.++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~---~~~~g~V~ai~~~~~~lv~~~g--------~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS---TEVKGPVTAICSFNGRLVVAVG--------NKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE---EEESS-EEEEEEETTEEEEEET--------TEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE---EeecCcceEhhhhCCEEEEeec--------CEEE
Confidence 46666665432111 12 57999998885 5655542 2223335566777888666654 5588
Q ss_pred EeeCCCCc-EEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEE
Q 005493 228 MFDLKSLT-WLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 306 (694)
Q Consensus 228 ~yd~~t~~-W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav 306 (694)
+|++.... +.... ....+-+..++.+.++. +++|-.... -.++.|+.+..+-..+... +.++...++.
T Consensus 111 v~~l~~~~~l~~~~---~~~~~~~i~sl~~~~~~--I~vgD~~~s---v~~~~~~~~~~~l~~va~d---~~~~~v~~~~ 179 (321)
T PF03178_consen 111 VYDLDNSKTLLKKA---FYDSPFYITSLSVFKNY--ILVGDAMKS---VSLLRYDEENNKLILVARD---YQPRWVTAAE 179 (321)
T ss_dssp EEEEETTSSEEEEE---EE-BSSSEEEEEEETTE--EEEEESSSS---EEEEEEETTTE-EEEEEEE---SS-BEEEEEE
T ss_pred EEEccCcccchhhh---eecceEEEEEEeccccE--EEEEEcccC---EEEEEEEccCCEEEEEEec---CCCccEEEEE
Confidence 88888777 87775 44444455666666664 445533211 1355667766667777654 5567666666
Q ss_pred EE-CCEEEEEcC
Q 005493 307 LC-GTKWYIAGG 317 (694)
Q Consensus 307 ~~-~~~iyV~GG 317 (694)
.+ ++..++++-
T Consensus 180 ~l~d~~~~i~~D 191 (321)
T PF03178_consen 180 FLVDEDTIIVGD 191 (321)
T ss_dssp EE-SSSEEEEEE
T ss_pred EecCCcEEEEEc
Confidence 66 555444443
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=83.61 E-value=4.1 Score=44.19 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhH
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFS 604 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~ 604 (694)
....+.+.+=.+-+.|..||++|.+.++.+|+.++
T Consensus 71 le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 71 LERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444555566666666666666666544
|
|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
Probab=83.18 E-value=5.1 Score=47.52 Aligned_cols=53 Identities=30% Similarity=0.299 Sum_probs=33.9
Q ss_pred chhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHH--------HHHHHHHHHHHhhhh
Q 005493 583 GILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADS--------LKEMELLKEKLAGLE 635 (694)
Q Consensus 583 ~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~--------~~~~~~l~~k~~~~~ 635 (694)
..||.+|.+-.+.+-.+||+|...-+.|++.|++-+.. .+--|.+|.+..+||
T Consensus 491 ~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE 551 (697)
T PF09726_consen 491 QQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLE 551 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHH
Confidence 46777777777777777777777766666666655543 134455666666665
|
; GO: 0016021 integral to membrane |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=83.11 E-value=1.2e+02 Score=36.79 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=45.3
Q ss_pred CeEEEecCCCCCCCccccccCccccCCCCCCCCceEEeeccCCCCCCc------cceEEEEECCEEEEEcCCCCCCCcCc
Q 005493 42 ECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPR------FNHAAAVIGNKMIVVGGESGNGLLDD 115 (694)
Q Consensus 42 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~~~~t~~W~~l~~~~~~P~~R------~~hs~~~~~~~lyv~GG~~~~~~~~~ 115 (694)
.....+||......+.-...+-.-++ ......|+.-. ++.+.++ ...+-+++++.||+... .+.
T Consensus 136 ~~W~~yg~~~~~~RySpL~qIn~~NV--~~L~~aWt~~t--Gd~~~~~~~~~~~~e~TPlvvgg~lYv~t~------~~~ 205 (764)
T TIGR03074 136 GDWAAYGRTQAGQRYSPLDQINPDNV--GNLKVAWTYHT--GDLKTPDDPGEATFQATPLKVGDTLYLCTP------HNK 205 (764)
T ss_pred CCccccCCCCcccccCcccccCcccc--cCceEEEEEEC--CCccccccccccccccCCEEECCEEEEECC------CCe
Confidence 44777788555444433222111111 13456787643 3443322 23455677999999754 356
Q ss_pred EEEEECCCC--cEEEccc
Q 005493 116 VQVLNFDRF--SWTAASS 131 (694)
Q Consensus 116 v~~yd~~t~--~W~~~~~ 131 (694)
++.+|..|+ .|+.-+.
T Consensus 206 V~ALDa~TGk~lW~~d~~ 223 (764)
T TIGR03074 206 VIALDAATGKEKWKFDPK 223 (764)
T ss_pred EEEEECCCCcEEEEEcCC
Confidence 889998875 6887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease | Back alignment and domain information |
|---|
Probab=82.62 E-value=7.7 Score=38.46 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=28.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhc
Q 005493 607 LKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEAN 642 (694)
Q Consensus 607 ~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~ 642 (694)
|.+|+++..+|..+...++.-++|+..+++--|-++
T Consensus 117 L~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~ 152 (194)
T PF15619_consen 117 LAEREELQRKLSQLEQKLQEKEKKIQELEKQLELEN 152 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667889999999988899998999988887544433
|
|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
Probab=82.57 E-value=10 Score=35.61 Aligned_cols=93 Identities=20% Similarity=0.215 Sum_probs=39.0
Q ss_pred HHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCccchh
Q 005493 578 LIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNVRLEH 657 (694)
Q Consensus 578 ~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~ 657 (694)
++-+...++.++..+-....+.|..+.++.+-.+.+|..+..+...+..+|.++...+...-.+-+ ..--+.-||.
T Consensus 12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~----l~rriq~LEe 87 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQ----LNRRIQLLEE 87 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHH----HHhhHHHHHH
Confidence 344444555555555555555555555554444444433333333333333333333322111111 1111223455
Q ss_pred hHHHHHHHHhhhhhhhh
Q 005493 658 DVAFLKAVLDDTQKVNC 674 (694)
Q Consensus 658 ~~~~~~~~~~~~~~~~~ 674 (694)
|+.-.-.-|.+|...|.
T Consensus 88 ele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 88 ELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555443
|
In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis []. |
| >KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=82.55 E-value=3 Score=49.17 Aligned_cols=92 Identities=26% Similarity=0.287 Sum_probs=62.2
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccc
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVH 649 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~ 649 (694)
++|++|.+|=.-..+--+.|..+.-+++-|||.|+++-+...+.=+|++...++++ |.+.+.+-|+.--=+..-
T Consensus 959 ~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~------a~lr~Ke~efeetmdaLq 1032 (1243)
T KOG0971|consen 959 DRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQ------ALLRKKEKEFEETMDALQ 1032 (1243)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 67777777766666666678889999999999999998888887777775555443 222222222222234455
Q ss_pred cCCccchhhHHHHHHHHh
Q 005493 650 SDNVRLEHDVAFLKAVLD 667 (694)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~ 667 (694)
+|=--||.|.+-||--|.
T Consensus 1033 ~di~~lEsek~elKqrl~ 1050 (1243)
T KOG0971|consen 1033 ADIDQLESEKAELKQRLN 1050 (1243)
T ss_pred HHHHHHHhhHHHHHHHhh
Confidence 555668888888888873
|
|
| >TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family | Back alignment and domain information |
|---|
Probab=82.46 E-value=5.2 Score=44.30 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=9.7
Q ss_pred hHHHHHHHHhhchhhHHHHHHHhhHH
Q 005493 572 ESKMAALIRKNGILEGQLAAALVNRE 597 (694)
Q Consensus 572 ~~~~~~~~~~~~~l~~~l~~~~~~~~ 597 (694)
+++++++-.+-+.++.|++.+...++
T Consensus 143 ~~~~~~l~~~i~~~~~~i~~~~~~l~ 168 (423)
T TIGR01843 143 RAQLELILAQIKQLEAELAGLQAQLQ 168 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
|
Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. |
| >COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.37 E-value=9.4 Score=38.95 Aligned_cols=69 Identities=14% Similarity=0.155 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQ 638 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~ 638 (694)
-.+.++..+-.+..--..-|.+|.+.++.+-|++..+....+.++........+...+++|++..+.++
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445577788888888888888877788888877777777777777777766554
|
|
| >PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants | Back alignment and domain information |
|---|
Probab=82.33 E-value=3.3 Score=49.27 Aligned_cols=97 Identities=33% Similarity=0.379 Sum_probs=62.4
Q ss_pred hhchhhHHHHHHHhhHHHHhhhhHHH---H--------hhHHHHHHHHHHH----HHHHH----HHHHHHhhhhHhH---
Q 005493 581 KNGILEGQLAAALVNREAAEKNFSSV---L--------KSRQEMEKKLADS----LKEME----LLKEKLAGLELAQ--- 638 (694)
Q Consensus 581 ~~~~l~~~l~~~~~~~~~~e~~~~~~---~--------~~~~~~e~~~~~~----~~~~~----~l~~k~~~~~~~~--- 638 (694)
+-..|.+||++|+..+-.+|-..+-+ | .-|+|-|.|+.++ .++++ .|+.||+++...-
T Consensus 25 e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~ 104 (769)
T PF05911_consen 25 EAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAES 104 (769)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578889999999888888877654 2 3466777777653 34444 4446666554322
Q ss_pred -hhhcccccccc----------cCCccchhhHHHHHHHHhhhhhhhhhhh
Q 005493 639 -EEANSLSNIVH----------SDNVRLEHDVAFLKAVLDDTQKVNCSYY 677 (694)
Q Consensus 639 -e~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (694)
-|..+|++.+. -..-+.|.|+.-|++-|+.++||.-+.+
T Consensus 105 ~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lk 154 (769)
T PF05911_consen 105 AAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLK 154 (769)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444554322 2234556778889999999999987765
|
The function of this family is unknown. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=81.87 E-value=59 Score=33.94 Aligned_cols=113 Identities=18% Similarity=0.155 Sum_probs=64.1
Q ss_pred ECCEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcce-eeEEEEE--CCeEEEEccccCCCccccceEEeeC
Q 005493 155 WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARS-GHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDL 231 (694)
Q Consensus 155 ~~~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~-~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~ 231 (694)
-++.+|+.-= .-+-+-+.|+.+..=..++ .|.+.. +.--+.. -+.+++. . .-...+++||+
T Consensus 198 pdGsvwyasl------agnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~wit----t--wg~g~l~rfdP 261 (353)
T COG4257 198 PDGSVWYASL------AGNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWIT----T--WGTGSLHRFDP 261 (353)
T ss_pred CCCcEEEEec------cccceEEcccccCCcceec----CCCcccccccccccCccCcEEEe----c--cCCceeeEeCc
Confidence 3677777521 1235667788777555554 243311 1111122 2577776 1 12467999999
Q ss_pred CCCcEEEcccCCCCCCCcceeEEEEECCc-EEEEEcCCCCCCCCCeEEEEEcCCCcEEEeec
Q 005493 232 KSLTWLPLHCTGTGPSPRSNHVAALYDDK-NLLIFGGSSKSKTLNDLYSLDFETMIWTRIKI 292 (694)
Q Consensus 232 ~t~~W~~l~~~g~~P~~R~~hs~~~~~~~-~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~ 292 (694)
.+..|......|.-| |-. ...+++. ++++.- -..+.+.+||+++.+.+.++.
T Consensus 262 s~~sW~eypLPgs~a--rpy--s~rVD~~grVW~se-----a~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 262 SVTSWIEYPLPGSKA--RPY--SMRVDRHGRVWLSE-----ADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred ccccceeeeCCCCCC--Ccc--eeeeccCCcEEeec-----cccCceeecCcccceEEEecC
Confidence 999999985433322 222 2333332 355421 113569999999999998854
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=81.64 E-value=1e+02 Score=35.19 Aligned_cols=108 Identities=14% Similarity=0.120 Sum_probs=52.6
Q ss_pred CeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcE
Q 005493 208 SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW 287 (694)
Q Consensus 208 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W 287 (694)
+.+++.||.+. .+.+||+.+.+-...- . .... .-.+++...+..+++.|+.++ .+.+||+.++.-
T Consensus 138 ~~iLaSgs~Dg------tVrIWDl~tg~~~~~l-~-~h~~--~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg~~ 202 (493)
T PTZ00421 138 MNVLASAGADM------VVNVWDVERGKAVEVI-K-CHSD--QITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDGTI 202 (493)
T ss_pred CCEEEEEeCCC------EEEEEECCCCeEEEEE-c-CCCC--ceEEEEEECCCCEEEEecCCC-----EEEEEECCCCcE
Confidence 35777777553 4778888776532211 0 1111 122333333333677777654 488999987653
Q ss_pred E-EeeccCCCCCCCcceEEEEE-CCEEEEEcCCCCCCCcCeEEEEECCCC
Q 005493 288 T-RIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFDILKG 335 (694)
Q Consensus 288 ~-~l~~~~~~p~~R~~~sav~~-~~~iyV~GG~~~~~~~~~v~~yd~~t~ 335 (694)
. .+... ...+. ..++.. ++..++..|.+.. ....+.+||+.+.
T Consensus 203 v~tl~~H---~~~~~-~~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr~~ 247 (493)
T PTZ00421 203 VSSVEAH---ASAKS-QRCLWAKRKDLIITLGCSKS-QQRQIMLWDTRKM 247 (493)
T ss_pred EEEEecC---CCCcc-eEEEEcCCCCeEEEEecCCC-CCCeEEEEeCCCC
Confidence 2 22111 11111 112222 3344455554321 1245888998754
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=81.59 E-value=94 Score=34.65 Aligned_cols=187 Identities=9% Similarity=0.011 Sum_probs=90.7
Q ss_pred ccEEEEEECCCCcEEEeeecCCCCCcceeeEEEEECCeEEEEccccCCCccccceEEeeCCCCcEEEcccCCCCCCCcce
Q 005493 172 RVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251 (694)
Q Consensus 172 ~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~l~~~g~~P~~R~~ 251 (694)
...+|.+|........+... +..-.. -...-+++.+++...... ...+|++|+.+.+=..+. ..+.. .
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~---~~~v~~-p~wSPDG~~la~~s~~~~---~~~I~~~dl~~g~~~~l~---~~~g~--~ 242 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSS---PEPIIS-PAWSPDGTKLAYVSFESK---KPVVYVHDLATGRRRVVA---NFKGS--N 242 (427)
T ss_pred ccEEEEECCCCCCceEeccC---CCCccc-ceEcCCCCEEEEEEccCC---CcEEEEEECCCCCEEEee---cCCCC--c
Confidence 35799998866555544321 111111 111124544444433221 256999999888766554 22211 1
Q ss_pred eEEEEE-CCcEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECC-EEEEEcCCCCCCCcCeEEE
Q 005493 252 HVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT-KWYIAGGGSRKKRHAETLI 329 (694)
Q Consensus 252 hs~~~~-~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~-~iyV~GG~~~~~~~~~v~~ 329 (694)
.+.+.. +++.|++.....+ ..++|.+|+.++..+.+... . .........-++ .|++.....+ ...+|.
T Consensus 243 ~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~---~-~~~~~~~wSpDG~~l~f~s~~~g---~~~Iy~ 312 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRDG---NSQIYTVNADGSGLRRLTQS---S-GIDTEPFFSPDGRSIYFTSDRGG---APQIYR 312 (427)
T ss_pred cceEECCCCCEEEEEEccCC---CceEEEEECCCCCcEECCCC---C-CCCcCeEEcCCCCEEEEEecCCC---CcEEEE
Confidence 122222 3443444333222 35799999988877666432 1 111111111144 4554432222 246889
Q ss_pred EECCCCcEEEeecCCCCCCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 330 FDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 330 yd~~t~~W~~l~~~~~~~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
++..+.....+... ..... ...+.. ++.+|+......+. ..++++|+...+
T Consensus 313 ~~~~~g~~~~lt~~------g~~~~-~~~~Sp-DG~~Ia~~s~~~g~--~~I~v~d~~~g~ 363 (427)
T PRK02889 313 MPASGGAAQRVTFT------GSYNT-SPRISP-DGKLLAYISRVGGA--FKLYVQDLATGQ 363 (427)
T ss_pred EECCCCceEEEecC------CCCcC-ceEECC-CCCEEEEEEccCCc--EEEEEEECCCCC
Confidence 99888777666421 11111 123433 33455544433322 368888876654
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=81.26 E-value=15 Score=42.62 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=48.3
Q ss_pred hHHHHHHHHhhchhhHHHHHHHhhHH---HHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhccccccc
Q 005493 572 ESKMAALIRKNGILEGQLAAALVNRE---AAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIV 648 (694)
Q Consensus 572 ~~~~~~~~~~~~~l~~~l~~~~~~~~---~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~ 648 (694)
..++..+...-..|+.||......+. +.+.++..+.+...+++.++.....+++.++.+...++.+.|+.++.
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~---- 373 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE---- 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 55555555555666666665444444 44444444455555555555554455544444444444444443333
Q ss_pred ccCCccchhhHHHHHHHHhhhhhhhhh
Q 005493 649 HSDNVRLEHDVAFLKAVLDDTQKVNCS 675 (694)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (694)
+..+|.++.-|..-|++++.+++.
T Consensus 374 ---~~~~~~~l~~l~~~l~~~~~~~~~ 397 (562)
T PHA02562 374 ---FVDNAEELAKLQDELDKIVKTKSE 397 (562)
T ss_pred ---hhchHHHHHHHHHHHHHHHHHHHH
Confidence 333444555444444444444433
|
|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
Probab=81.25 E-value=6.5 Score=46.57 Aligned_cols=106 Identities=15% Similarity=0.199 Sum_probs=55.9
Q ss_pred hhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHH-----------HhhHHHHHHHHHHHHHHHHHHHHHHhhhh--
Q 005493 569 QFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSV-----------LKSRQEMEKKLADSLKEMELLKEKLAGLE-- 635 (694)
Q Consensus 569 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~-----------~~~~~~~e~~~~~~~~~~~~l~~k~~~~~-- 635 (694)
...+.++.++..+-..++++++...+.++++++++..+ +++|+++|+++....++.+..+.++...-
T Consensus 212 ~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~ 291 (650)
T TIGR03185 212 EALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAAD 291 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445555555555555555555555555555555433 56677777777766666666665554332
Q ss_pred -----HhHhhhcccccccccCCccchhhHHHHHHHHhhhhhhhhhh
Q 005493 636 -----LAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQKVNCSY 676 (694)
Q Consensus 636 -----~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (694)
++..-...+.+.+..+.. -....|.+.+|.+.++.|..+
T Consensus 292 ~~p~~l~~~ll~~~~~q~~~e~~--~~~~~~~~~~l~~~~~~i~~~ 335 (650)
T TIGR03185 292 PLPLLLIPNLLDSTKAQLQKEEQ--SQQNQLTQEELEERDKELLES 335 (650)
T ss_pred cCCHhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 233333334444443331 124555666666655555543
|
This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria. |
| >PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion | Back alignment and domain information |
|---|
Probab=81.15 E-value=9.8 Score=37.39 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005493 570 FYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLE 635 (694)
Q Consensus 570 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~ 635 (694)
..+..++++-++...++.++.+....++..++++....+.++..++++....++++.+.+.+..+.
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666666666666666666666677777777777777776666666665
|
The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions []. |
| >PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] | Back alignment and domain information |
|---|
Probab=81.00 E-value=27 Score=31.79 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=42.1
Q ss_pred CCchhhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHH
Q 005493 564 PSSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKL 617 (694)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~ 617 (694)
+.++-....+.+.++=.+..+|..+|+...+.+++|...+..+++..++++...
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~ 67 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALK 67 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556777777777778888999999999999999999988887777665443
|
The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family []. |
| >PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases | Back alignment and domain information |
|---|
Probab=80.99 E-value=3.3 Score=44.96 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=74.6
Q ss_pred HHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcccccccccCCc
Q 005493 574 KMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANSLSNIVHSDNV 653 (694)
Q Consensus 574 ~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~~~~~~~~~~~ 653 (694)
++.-+.++-+.++++|..+...++++++.+..+-+.-++++++...+.++.+.|+.++...+.--+-|+.|-+-..+++.
T Consensus 215 ~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~ 294 (344)
T PF12777_consen 215 EVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKE 294 (344)
T ss_dssp CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhh
Confidence 33445555566677777777777777777777777777888888888888899999988888888888999999999999
Q ss_pred cchhhHHHHHHHHh
Q 005493 654 RLEHDVAFLKAVLD 667 (694)
Q Consensus 654 ~~~~~~~~~~~~~~ 667 (694)
|-+..++-|+.-+.
T Consensus 295 RW~~~~~~l~~~~~ 308 (344)
T PF12777_consen 295 RWSEQIEELEEQLK 308 (344)
T ss_dssp CCHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc
Confidence 99998888776554
|
The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A. |
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
Probab=80.98 E-value=12 Score=40.06 Aligned_cols=17 Identities=24% Similarity=0.173 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHhhhhhh
Q 005493 656 EHDVAFLKAVLDDTQKV 672 (694)
Q Consensus 656 ~~~~~~~~~~~~~~~~~ 672 (694)
.+||.-|||.++-.|+.
T Consensus 270 ~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 270 FKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47888888888888775
|
This domain is found in cell division proteins which are required for kinetochore-spindle association. |
| >PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=80.92 E-value=8.8 Score=39.09 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=63.2
Q ss_pred CchhhhhhHHHHHHHHhhchhhHHHHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Q 005493 565 SSIYQFYESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELA 637 (694)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~ 637 (694)
+...++|.+++.+|+++.+...++|-..-+-....|.-...+-.+|.+.+++.+...+||..||..+-.+.+.
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456899999999999999999999998888888888888888888888888888888999999888887643
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=80.82 E-value=7.5 Score=49.18 Aligned_cols=7 Identities=29% Similarity=0.283 Sum_probs=2.5
Q ss_pred hhHHHHH
Q 005493 585 LEGQLAA 591 (694)
Q Consensus 585 l~~~l~~ 591 (694)
++.+|..
T Consensus 313 ~~~~l~~ 319 (1164)
T TIGR02169 313 KERELED 319 (1164)
T ss_pred HHHHHHH
Confidence 3333333
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=80.70 E-value=1.1e+02 Score=34.95 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=74.4
Q ss_pred CEEEEEccccCCCCCccEEEEEECCCCcEEEeeecCCCCCcceeeEEEE-ECCeEEEEccccCCCccccceEEeeCCCCc
Q 005493 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (694)
Q Consensus 157 ~~Iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~g~~p~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 235 (694)
+.+++.||.+ ..+.+||+.+.+-...-. .... .-.+++. .++.+++.|+.+. .+.+||+.+.+
T Consensus 138 ~~iLaSgs~D------gtVrIWDl~tg~~~~~l~--~h~~--~V~sla~spdG~lLatgs~Dg------~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGAD------MVVNVWDVERGKAVEVIK--CHSD--QITSLEWNLDGSLLCTTSKDK------KLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCC------CEEEEEECCCCeEEEEEc--CCCC--ceEEEEEECCCCEEEEecCCC------EEEEEECCCCc
Confidence 4577777754 278899998765322110 0111 1112222 2577888887653 47889988765
Q ss_pred EE-EcccCCCCCCCcceeEEEEECCcEEEEEcCCCCCCCCCeEEEEEcCCCcE--EEeeccCCCCCCCcceEEEEE--CC
Q 005493 236 WL-PLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIW--TRIKIRGFHPSPRAGCCGVLC--GT 310 (694)
Q Consensus 236 W~-~l~~~g~~P~~R~~hs~~~~~~~~lyv~GG~~~~~~~~dv~~yd~~t~~W--~~l~~~~~~p~~R~~~sav~~--~~ 310 (694)
-. .+. .....+....+...++. .++..|.+.. .-..+.+||+.+... ..... .......+..+ ++
T Consensus 202 ~v~tl~---~H~~~~~~~~~w~~~~~-~ivt~G~s~s-~Dr~VklWDlr~~~~p~~~~~~-----d~~~~~~~~~~d~d~ 271 (493)
T PTZ00421 202 IVSSVE---AHASAKSQRCLWAKRKD-LIITLGCSKS-QQRQIMLWDTRKMASPYSTVDL-----DQSSALFIPFFDEDT 271 (493)
T ss_pred EEEEEe---cCCCCcceEEEEcCCCC-eEEEEecCCC-CCCeEEEEeCCCCCCceeEecc-----CCCCceEEEEEcCCC
Confidence 32 121 11111111112222334 4444454321 124688999865331 11110 11112222233 45
Q ss_pred EEEEEcCCCCCCCcCeEEEEECCCCcEEEe
Q 005493 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (694)
Q Consensus 311 ~iyV~GG~~~~~~~~~v~~yd~~t~~W~~l 340 (694)
.++++||... ..+.+||+.+......
T Consensus 272 ~~L~lggkgD----g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 272 NLLYIGSKGE----GNIRCFELMNERLTFC 297 (493)
T ss_pred CEEEEEEeCC----CeEEEEEeeCCceEEE
Confidence 6666666322 2488999988776544
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.55 E-value=43 Score=38.10 Aligned_cols=126 Identities=12% Similarity=0.137 Sum_probs=62.2
Q ss_pred CCcceeEEEEECC-cEEEEEcCCCCCCCCCeEEEEEcCCCcEEEeeccCCCCCCCcceEEEEECCEEEEEcCCCCCCCcC
Q 005493 247 SPRSNHVAALYDD-KNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHA 325 (694)
Q Consensus 247 ~~R~~hs~~~~~~-~~lyv~GG~~~~~~~~dv~~yd~~t~~W~~l~~~~~~p~~R~~~sav~~~~~iyV~GG~~~~~~~~ 325 (694)
.|+++.-+++..- .-||+.|- -++||+|+++.++|-..-.. ..+-..++.+---..++.+||-.+.
T Consensus 132 IP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL~P~~~---~~~~lN~v~in~~hgLla~Gt~~g~---- 198 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFLNPFET---DSGELNVVSINEEHGLLACGTEDGV---- 198 (703)
T ss_pred cCcCCccccccCCCccEEEeec------CcceEEEEcccccccccccc---ccccceeeeecCccceEEecccCce----
Confidence 3455555554432 22555442 24799999999998643221 1122222222223578888887664
Q ss_pred eEEEEECCCCcEEEeecCCCC---CCCCCcCcEEEEEeecCCcEEEEEcCCCCCCCCcEEEEECccCC
Q 005493 326 ETLIFDILKGEWSVAITSPSS---SVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 326 ~v~~yd~~t~~W~~l~~~~~~---~p~~r~~~s~~~v~~~~~~~i~v~GG~~~~~~~~v~~~di~~~~ 390 (694)
+..+|+.+..--.......+ .|......+.+.+...+.+--+.+|-. ...+++||+.+.+
T Consensus 199 -VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 199 -VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIYDLRASK 261 (703)
T ss_pred -EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEEEcccCC
Confidence 78888877543221111212 122222223333333332233334433 2357888876654
|
|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
Probab=80.49 E-value=6.9 Score=46.37 Aligned_cols=72 Identities=24% Similarity=0.238 Sum_probs=49.4
Q ss_pred hHHHHHHHHhhchhhHHHHHHHhhHHHH--hhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhHhHhhhcc
Q 005493 572 ESKMAALIRKNGILEGQLAAALVNREAA--EKNFSSVLKSRQEMEKKLADSLKEMELLKEKLAGLELAQEEANS 643 (694)
Q Consensus 572 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~--e~~~~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~~~e~~~~ 643 (694)
.+++.+++.+...++.+|+..-..+..+ +.+.+.+.+.++++++++..+.++++.+++++..++...++.++
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777888888887776666553 45667777777777777777777777777776666555444443
|
This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria. |
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
Probab=80.38 E-value=9.9 Score=40.60 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=26.0
Q ss_pred CCchhhhhhHHHHHHHHhhchhhHH-------HHHHHhhHHHHhhhhHHHHhhHHHHHHHHHHHHH
Q 005493 564 PSSIYQFYESKMAALIRKNGILEGQ-------LAAALVNREAAEKNFSSVLKSRQEMEKKLADSLK 622 (694)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~l~~~-------l~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~ 622 (694)
++++....+.++ ++|+.++.|+.+ ...-.-.++.++.++..+-..++.+.++++.+..
T Consensus 108 ~~d~r~lm~~Qf-~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~ 172 (312)
T smart00787 108 SPDVKLLMDKQF-QLVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNS 172 (312)
T ss_pred CHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554333 455555555432 1123334444444444444444444444444333
|
This domain is found in cell division proteins which are required for kinetochore-spindle association. |
| >PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8 | Back alignment and domain information |
|---|
Probab=80.23 E-value=7.2 Score=38.51 Aligned_cols=64 Identities=27% Similarity=0.335 Sum_probs=42.9
Q ss_pred HHHHHHHHhhchhhHHHHHHHhhHHHHhhhh--------HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 005493 573 SKMAALIRKNGILEGQLAAALVNREAAEKNF--------SSVLKSRQEMEKKLADSLKEMELLKEKLAGLEL 636 (694)
Q Consensus 573 ~~~~~~~~~~~~l~~~l~~~~~~~~~~e~~~--------~~~~~~~~~~e~~~~~~~~~~~~l~~k~~~~~~ 636 (694)
..+..+|++-..++.+++++....+.+.+.. ...-++.++++++|+.+.+|++.||++..++++
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666676677777666655544333222 233567778888888888899999998888864
|
Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 694 | ||||
| 2woz_A | 318 | The Novel Beta-Propeller Of The Btb-Kelch Protein K | 6e-04 | ||
| 2vpj_A | 301 | Crystal Structure Of The Kelch Domain Of Human Klhl | 9e-04 |
| >pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318 | Back alignment and structure |
|
| >pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 5e-41
Identities = 50/275 (18%), Positives = 87/275 (31%), Gaps = 35/275 (12%)
Query: 65 VSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIG--NKMIVVGGESGNG-LLDDVQVLNF 121
+ + + + + P+ R H I N+++++GG L D + +
Sbjct: 416 QLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475
Query: 122 DRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGK-KVLLVGGKTDSGSDRVSVWTFDT 180
W+ SL HS S VL++GG T+ + + ++
Sbjct: 476 KTREWS--------MIKSLS---HTRFRHSACSLPDGNVLILGGVTEGPA----MLLYNV 520
Query: 181 ETECWSVVEAKGDIPVARSGHTVV----RASSVLILFGGEDGKRRKLNDLHMFDLK---- 232
E + V K + + + +IL GG + + +F
Sbjct: 521 TEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENA 580
Query: 233 SLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTL---NDLYSLDFETMIWTR 289
+ + R + LLI GG+S S N + SLD + T
Sbjct: 581 TEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTS 640
Query: 290 IKI----RGFHPSPRAG-CCGVLCGTKWYIAGGGS 319
I I H AG +I GGG+
Sbjct: 641 IPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGA 675
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 155 bits (392), Expect = 8e-40
Identities = 48/271 (17%), Positives = 89/271 (32%), Gaps = 25/271 (9%)
Query: 136 SPSSLPLKIPACR-GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVE-AKGD 193
L + P R + G V +GG + + + + +E + +
Sbjct: 376 DYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSE 435
Query: 194 IPVARSGHT--VVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN 251
+PVAR HT + ++ L+L GG + L+D +FD+K+ W + R
Sbjct: 436 VPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSM---IKSLSHTRFR 492
Query: 252 HVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTK 311
H A D N+LI GG ++ + + I+ + + G+
Sbjct: 493 HSACSLPDGNVLILGGVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549
Query: 312 W---YIAGGGSRKKRHA--ETLIFDILKGEWS---VAITSPSSSVTSNKGFTLVLVQHKE 363
I GGG + + +IF + I + G + +
Sbjct: 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI---T 606
Query: 364 KDFLVAFGGIKK----EPSNQVEVLSIEKNE 390
L+ GG + +N + L
Sbjct: 607 PRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 114 bits (285), Expect = 2e-26
Identities = 36/252 (14%), Positives = 78/252 (30%), Gaps = 23/252 (9%)
Query: 182 TECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTW---LP 238
T + + P+ R V A + + GG + R +N++ +
Sbjct: 372 TVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYR--VNEILQLSIHYDKIDMKNI 429
Query: 239 LHCTGTGPSPRSNHVA-ALYDDKNLLIFGG-SSKSKTLNDLYSLDFETMIWTRIKIRGFH 296
+ P R H + + LL+ GG + + L+D + D +T W+ IK
Sbjct: 430 EVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSL--- 486
Query: 297 PSPRAGCCGVLCGTKW-YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFT 355
R I GG L++++ + + +T ++
Sbjct: 487 SHTRFRHSACSLPDGNVLILGG---VTEGPAMLLYNVTEEIFK-DVTPKDEFFQNSLVSA 542
Query: 356 LVLVQHKEKDFLVAFGGI--KKEPSNQVEVLSIEKNESSMGRRSTPNAKGPGQLLFEKRS 413
+ K ++ GG + S++ + + ++ + P +R
Sbjct: 543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF----QRY 598
Query: 414 SSTGLACQLGNG 425
S +
Sbjct: 599 GSQ--IKYITPR 608
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 4e-32
Identities = 50/265 (18%), Positives = 84/265 (31%), Gaps = 27/265 (10%)
Query: 86 PIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIP 145
R + A N + ++GG + + N + SW + P
Sbjct: 43 FEKRRDAACVFWDNVVYILGGSQLFP-IKRMDCYNVVKDSWYSKLG------------PP 89
Query: 146 ACR-GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV 204
R + + K+ GG S +DT TE W + R H +V
Sbjct: 90 TPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK---PSMLTQRCSHGMV 146
Query: 205 RASSVLILFGGEDGK---RRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKN 261
A+ ++ + GG G R LN ++D + TW L R NH DK
Sbjct: 147 EANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL---CPMIEARKNHGLVFVKDK- 202
Query: 262 LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK 321
+ GG + L+++ D + W + P G+ Y+ G
Sbjct: 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM---PWKGVTVKCAAVGSIVYVLAGFQGV 259
Query: 322 KRHAETLIFDILKGEWSVAITSPSS 346
R L ++ +W +
Sbjct: 260 GRLGHILEYNTETDKWVANSKVRAF 284
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 8e-20
Identities = 49/261 (18%), Positives = 80/261 (30%), Gaps = 39/261 (14%)
Query: 154 SWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILF 213
+ + G GS S F+ + W+ + R V +V+ +
Sbjct: 9 KKHDYRIALFG----GSQPQSCRYFNPKDYSWTDI---RCPFEKRRDAACVFWDNVVYIL 61
Query: 214 GGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKT 273
GG + + +++ +W P+PR + A + K + GGS +
Sbjct: 62 GGSQLFP--IKRMDCYNVVKDSWYSKLGP---PTPRDSLAACAAEGK-IYTSGGSEVGNS 115
Query: 274 -LNDLYSLDFETMIWTRIKIRGFHP--SPRAGCCGVLCGTKWYIAGGGSRKKRHAETL-- 328
L D T W + R V Y+ GG L
Sbjct: 116 ALYLFECYDTRTESWHTKP-----SMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNS 170
Query: 329 --IFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI-KKEPSNQVEVLS 385
++D W+ + + K LV V KD + A GG + VE
Sbjct: 171 CEVYDPATETWTEL----CPMIEARKNHGLVFV----KDKIFAVGGQNGLGGLDNVEYYD 222
Query: 386 IEKNE----SSMG-RRSTPNA 401
I+ NE S M + T
Sbjct: 223 IKLNEWKMVSPMPWKGVTVKC 243
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 22/135 (16%)
Query: 86 PIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIP 145
R NH + +K+ VGG++G G LD+V+ + W S +P
Sbjct: 188 IEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP------------MP 235
Query: 146 ACR-GHSLISWGKKVLLVGGKTDSGSDRV-SVWTFDTETECWSVVEAKGDIPVARSGHTV 203
+ G V ++ G G R+ + ++TET+ W + +
Sbjct: 236 WKGVTVKCAAVGSIVYVLAG--FQGVGRLGHILEYNTETDKWVAN---SKVRAFPVTSCL 290
Query: 204 VRASSVLILFGGEDG 218
+ V+ G +
Sbjct: 291 I---CVVDTCGANEE 302
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-32
Identities = 43/266 (16%), Positives = 82/266 (30%), Gaps = 29/266 (10%)
Query: 86 PIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIP 145
P R + + VGG +G+ + V + + WT+ + ++
Sbjct: 49 PSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA----------NMRDR 98
Query: 146 ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR 205
+ VGG S SV ++ ++ W V + RS V
Sbjct: 99 RST-LGAAVLNGLLYAVGGFDGSTGLS-SVEAYNIKSNEWFHV---APMNTRRSSVGVGV 153
Query: 206 ASSVLILFGGEDGKRRK-LNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLI 264
+L GG D R+ L+ + ++ + W + + RS + ++ L
Sbjct: 154 VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI---AEMSTRRSGAGVGVLNNL-LYA 209
Query: 265 FGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS---PRAGCCGVLCGTKWYIAGGGSRK 321
GG + D T W ++ R Y+ GG
Sbjct: 210 VGGHDGPLVRKSVEVYDPTTNAWRQV------ADMNMCRRNAGVCAVNGLLYVVGGDDGS 263
Query: 322 KRHAETLIFDILKGEWSVAITSPSSS 347
A ++ +W+V + S+
Sbjct: 264 CNLASVEYYNPTTDKWTVVSSCMSTG 289
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 6e-25
Identities = 53/310 (17%), Positives = 99/310 (31%), Gaps = 42/310 (13%)
Query: 88 PRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPAC 147
R + K++VV G + V+ +F W + +P+
Sbjct: 4 VRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAE------------LPSR 51
Query: 148 R-GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA 206
R ++ V VGG + +V ++D + W+ V ++ RS
Sbjct: 52 RCRAGMVYMAGLVFAVGG-FNGSLRVRTVDSYDPVKDQWTSVA---NMRDRRSTLGAAVL 107
Query: 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWL---PLHCTGTGPSPRSNHVAALYDDKNLL 263
+ +L GG DG L+ + +++KS W P+ + RS+ + L
Sbjct: 108 NGLLYAVGGFDGSTG-LSSVEAYNIKSNEWFHVAPM------NTRRSSVGVGVVGGL-LY 159
Query: 264 IFGGSSKS--KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK 321
GG + + L+ + + T WT I + R+G + Y GG
Sbjct: 160 AVGGYDVASRQCLSTVECYNATTNEWTYIAE---MSTRRSGAGVGVLNNLLYAVGGHDGP 216
Query: 322 KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI-KKEPSNQ 380
++D W + + + V L GG
Sbjct: 217 LVRKSVEVYDPTTNAWRQV----ADMNMCRRNAGVCAVNGL----LYVVGGDDGSCNLAS 268
Query: 381 VEVLSIEKNE 390
VE + ++
Sbjct: 269 VEYYNPTTDK 278
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 3e-13
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 18/121 (14%)
Query: 86 PIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIP 145
R V+ N + VGG G + V+V + +W + +
Sbjct: 192 STRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD------------MN 239
Query: 146 ACR-GHSLISWGKKVLLVGGKTDSGSDRV-SVWTFDTETECWSVVEAKGDIPVARSGHTV 203
CR + + + +VGG D GS + SV ++ T+ W+VV + + RS V
Sbjct: 240 MCRRNAGVCAVNGLLYVVGG--DDGSCNLASVEYYNPTTDKWTVVSS--CMSTGRSYAGV 295
Query: 204 V 204
Sbjct: 296 T 296
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 32/159 (20%), Positives = 58/159 (36%), Gaps = 18/159 (11%)
Query: 247 SPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGV 306
S R+ + K +++ GG + K + + DF+ W ++ PS R V
Sbjct: 3 SVRTRLRTPMNLPKLMVVVGGQA-PKAIRSVECYDFKEERWHQVAE---LPSRRCRAGMV 58
Query: 307 LCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDF 366
+ GG + R +D +K +W+ ++ ++
Sbjct: 59 YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV----ANMRDRRSTLGAAVLNGL---- 110
Query: 367 LVAFGGI-KKEPSNQVEVLSIEKNE----SSMG-RRSTP 399
L A GG + VE +I+ NE + M RRS+
Sbjct: 111 LYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV 149
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 5e-32
Identities = 55/261 (21%), Positives = 98/261 (37%), Gaps = 32/261 (12%)
Query: 86 PIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFD---RFSWTAASSKLYLSPSSLPL 142
R A+ + +++ V+GG G L V+ L++ W + + P+
Sbjct: 50 TRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA----------PM 99
Query: 143 KIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHT 202
+ + G + + GG S S+ +D + WS++ GD+ AR G
Sbjct: 100 NVRRG-LAGATTLGDMIYVSGGFDGSRRHT-SMERYDPNIDQWSML---GDMQTAREGAG 154
Query: 203 VVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNL 262
+V AS V+ GG DG LN + +D + W + + RS AL +D +
Sbjct: 155 LVVASGVIYCLGGYDGLNI-LNSVEKYDPHTGHWTNV---TPMATKRSGAGVALLNDH-I 209
Query: 263 LIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS---PRAGCCGVLCGTKWYIAGGGS 319
+ GG + L+ + + + T WT + S PR + + Y G
Sbjct: 210 YVVGGFDGTAHLSSVEAYNIRTDSWTTV------TSMTTPRCYVGATVLRGRLYAIAGYD 263
Query: 320 RKKRHAETLIFDILKGEWSVA 340
+ +D + W V
Sbjct: 264 GNSLLSSIECYDPIIDSWEVV 284
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 56/314 (17%), Positives = 95/314 (30%), Gaps = 45/314 (14%)
Query: 86 PIPRFNHAAAVIGNKMIVVGGESGNGL-LDDVQVLNFDRFSWTAASSKLYLSPSSLPLKI 144
PR ++VVGG +D V+ + W+ S I
Sbjct: 3 QGPRTRARLGANE-VLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPS------------I 49
Query: 145 PACR-GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDT---ETECWSVVEAKGDIPVARSG 200
R + +S ++ ++GG D S SV D E W V + V R
Sbjct: 50 TRKRRYVASVSLHDRIYVIGGY-DGRSRLSSVECLDYTADEDGVWYSVA---PMNVRRGL 105
Query: 201 HTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL---PLHCTGTGPSPRSNHVAALY 257
++ + GG DG RR + +D W + + R +
Sbjct: 106 AGATTLGDMIYVSGGFDGSRR-HTSMERYDPNIDQWSMLGDM------QTAREGAGLVVA 158
Query: 258 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGG 317
+ GG LN + D T WT + + R+G L Y+ GG
Sbjct: 159 SGV-IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVALLNDHIYVVGG 214
Query: 318 GSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI-KKE 376
+ ++I W+ +S T +++ + L A G
Sbjct: 215 FDGTAHLSSVEAYNIRTDSWTTV----TSMTTPRCYVGATVLRGR----LYAIAGYDGNS 266
Query: 377 PSNQVEVLSIEKNE 390
+ +E +
Sbjct: 267 LLSSIECYDPIIDS 280
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 40/223 (17%), Positives = 80/223 (35%), Gaps = 24/223 (10%)
Query: 86 PIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIP 145
+ R A +G+ + V GG G+ ++ + + W+ ++
Sbjct: 100 NVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG----------DMQTA 149
Query: 146 ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR 205
G L+ + +GG D + SV +D T W+ V + RSG V
Sbjct: 150 -REGAGLVVASGVIYCLGG-YDGLNILNSVEKYDPHTGHWTNV---TPMATKRSGAGVAL 204
Query: 206 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIF 265
+ + + GG DG L+ + +++++ +W + + +PR A + + L
Sbjct: 205 LNDHIYVVGGFDGTAH-LSSVEAYNIRTDSWTTV---TSMTTPRCYVGATVLRGR-LYAI 259
Query: 266 GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGVL 307
G + L+ + D W + + R VL
Sbjct: 260 AGYDGNSLLSSIECYDPIIDSWEVV---TSMGTQRCDAGVCVL 299
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 1e-21
Identities = 53/269 (19%), Positives = 86/269 (31%), Gaps = 34/269 (12%)
Query: 145 PACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV 204
R + + + +L+VGG S V +D +T+ WS + I R V
Sbjct: 3 QGPRTRARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFL---PSITRKRRYVASV 59
Query: 205 RASSVLILFGGEDGKRRKLNDLHMFDL---KSLTWLPLHCTGTGPSPRSNHVAALYDDKN 261
+ + GG DG+ R L+ + D + W + R A D
Sbjct: 60 SLHDRIYVIGGYDGRSR-LSSVECLDYTADEDGVWYSVAPM---NVRRGLAGATTLGDM- 114
Query: 262 LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPS---PRAGCCGVLCGTKWYIAGGG 318
+ + GG S+ + D W+ + R G V+ Y GG
Sbjct: 115 IYVSGGFDGSRRHTSMERYDPNIDQWSML------GDMQTAREGAGLVVASGVIYCLGGY 168
Query: 319 SRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI-KKEP 377
+D G W T+ + T G + L+ D + GG
Sbjct: 169 DGLNILNSVEKYDPHTGHW----TNVTPMATKRSGAGVALL----NDHIYVVGGFDGTAH 220
Query: 378 SNQVEVLSIEKNE----SSM-GRRSTPNA 401
+ VE +I + +SM R A
Sbjct: 221 LSSVEAYNIRTDSWTTVTSMTTPRCYVGA 249
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 4e-20
Identities = 29/175 (16%), Positives = 56/175 (32%), Gaps = 21/175 (12%)
Query: 86 PIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIP 145
R V + +GG G +L+ V+ + WT + +
Sbjct: 147 QTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTP------------MA 194
Query: 146 ACR-GHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV 204
R G + + +VGG D + SV ++ T+ W+ V + R
Sbjct: 195 TKRSGAGVALLNDHIYVVGG-FDGTAHLSSVEAYNIRTDSWTTV---TSMTTPRCYVGAT 250
Query: 205 RASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDD 259
L G DG L+ + +D +W + + + R + + +
Sbjct: 251 VLRGRLYAIAGYDGNSL-LSSIECYDPIIDSWEVV---TSMGTQRCDAGVCVLRE 301
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 2e-31
Identities = 52/259 (20%), Positives = 84/259 (32%), Gaps = 27/259 (10%)
Query: 86 PIPRFNHAAAVIGNKMIVVGGES----GNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLP 141
+PR A V+G + VGG + GN + N W+ + P
Sbjct: 58 QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA----------P 107
Query: 142 LKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGH 201
+ +P + + VGG SV ++ E + W +V + R G
Sbjct: 108 MSVPRN-RIGVGVIDGHIYAVGGSHGCIHHN-SVERYEPERDEWHLV---APMLTRRIGV 162
Query: 202 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKN 261
V + +L GG DG R LN + + W + + RS + +
Sbjct: 163 GVAVLNRLLYAVGGFDGTNR-LNSAECYYPERNEWRMI---TAMNTIRSGAGVCVLHNC- 217
Query: 262 LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRK 321
+ GG LN + D ET WT + R+ + + Y+ GG
Sbjct: 218 IYAAGGYDGQDQLNSVERYDVETETWTFVAPM---KHRRSALGITVHQGRIYVLGGYDGH 274
Query: 322 KRHAETLIFDILKGEWSVA 340
+D WS
Sbjct: 275 TFLDSVECYDPDTDTWSEV 293
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 6e-28
Identities = 52/313 (16%), Positives = 97/313 (30%), Gaps = 44/313 (14%)
Query: 86 PIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIP 145
+PR +HA V ++I G L ++ N +W + +
Sbjct: 13 LVPRGSHAPKV--GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLAD------------LQ 58
Query: 146 ACR-GHSLISWGKKVLLVGGKTDSGSDRV---SVWTFDTETECWSVVEAKGDIPVARSGH 201
R G + G + VGG+ +S ++ ++ T WS + V R+
Sbjct: 59 VPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPC---APMSVPRNRI 115
Query: 202 TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL---PLHCTGTGPSPRSNHVAALYD 258
V + GG G N + ++ + W P+ + R A+ +
Sbjct: 116 GVGVIDGHIYAVGGSHGCIH-HNSVERYEPERDEWHLVAPM------LTRRIGVGVAVLN 168
Query: 259 DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGG 318
L GG + LN E W I + R+G + Y AGG
Sbjct: 169 RL-LYAVGGFDGTNRLNSAECYYPERNEWRMITAM---NTIRSGAGVCVLHNCIYAAGGY 224
Query: 319 SRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK-KEP 377
+ + +D+ W+ + + + Q + + GG
Sbjct: 225 DGQDQLNSVERYDVETETWTFV----APMKHRRSALGITVHQGR----IYVLGGYDGHTF 276
Query: 378 SNQVEVLSIEKNE 390
+ VE + +
Sbjct: 277 LDSVECYDPDTDT 289
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-25
Identities = 45/222 (20%), Positives = 81/222 (36%), Gaps = 24/222 (10%)
Query: 86 PIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIP 145
+PR VI + VGG G + V+ +R W + P+
Sbjct: 109 SVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA----------PMLTR 158
Query: 146 ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR 205
G + + + VGG D + S + E W ++ + RSG V
Sbjct: 159 -RIGVGVAVLNRLLYAVGG-FDGTNRLNSAECYYPERNEWRMI---TAMNTIRSGAGVCV 213
Query: 206 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIF 265
+ + GG DG + +LN + +D+++ TW + RS ++ + + +
Sbjct: 214 LHNCIYAAGGYDG-QDQLNSVERYDVETETWTFV---APMKHRRSALGITVHQGR-IYVL 268
Query: 266 GGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG-CCGV 306
GG L+ + D +T W+ + S R+G V
Sbjct: 269 GGYDGHTFLDSVECYDPDTDTWSEV---TRMTSGRSGVGVAV 307
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-28
Identities = 48/280 (17%), Positives = 95/280 (33%), Gaps = 38/280 (13%)
Query: 86 PIPRFNHAAAVIGNKMIVVGGESGNG------LLDDVQVLNFDRFSWTAASSKLYLSPSS 139
+P+ + + N++ V GG N + + W
Sbjct: 33 QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP--------- 83
Query: 140 LPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRV--SVWTFDTETECWSVVEAKGDIPVA 197
PL P C L + +VGG+ +R SV +D + W + +P
Sbjct: 84 -PLPSPRCL-FGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPYV 138
Query: 198 RSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY 257
GHTV+ ++ + GG+ R+ LN + ++D K W L + RS A ++
Sbjct: 139 VYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKEL---APMQTARSLFGATVH 195
Query: 258 DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGG 317
D + +++ G + + + W + P R+ V Y GG
Sbjct: 196 DGR-IIVAAGVTDTGLTSSAEVYSITDNKWAPFEAF---PQERSSLSLVSLVGTLYAIGG 251
Query: 318 GSRKKRHAETL---------IFDILKGEWSVAITSPSSSV 348
+ + + L ++ + +W + + +
Sbjct: 252 FATLETESGELVPTELNDIWRYNEEEKKWEGVLREIAYAA 291
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 6e-26
Identities = 42/249 (16%), Positives = 69/249 (27%), Gaps = 42/249 (16%)
Query: 86 PIPRFNHAAAVIGNKMIVVGG---ESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPL 142
P PR N + VVGG + G LD V + F W + PL
Sbjct: 86 PSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD----------PL 135
Query: 143 KIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHT 202
GH+++S V ++GGK + +D + W + + ARS
Sbjct: 136 PYVVY-GHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA---PMQTARSLFG 191
Query: 203 VVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL---PLHCTGTGPSPRSNHVAALYDD 259
+I+ G + ++ + W P RS+
Sbjct: 192 ATVHDGRIIVAAGVTDTGL-TSSAEVYSITDNKWAPFEAF------PQERSSLSLVSLVG 244
Query: 260 KNLLIFGG---------SSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGT 310
L GG LND++ + E W +
Sbjct: 245 T-LYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL-----REIAYAAGATFLPV 298
Query: 311 KWYIAGGGS 319
+ +
Sbjct: 299 RLNVLRLTK 307
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 4e-14
Identities = 38/246 (15%), Positives = 73/246 (29%), Gaps = 39/246 (15%)
Query: 157 KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGE 216
+ ++ + +D V ++ ++V + + + GG
Sbjct: 5 DLIFMISEE--------GAVAYDPAANECYCASL--SSQVPKNHVSLVTKENQVFVAGGL 54
Query: 217 DGKRR-----KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKS 271
FD WL + PSPR + + + GG
Sbjct: 55 FYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL---PSPRCLFGLGEALNS-IYVVGGREIK 110
Query: 272 ---KTLNDLYSLDFETMIWTRIKIRGFHP--SPRAGCCGVLCGTKWYIAGG-GSRKKRHA 325
+ L+ + D + W P G + Y+ GG GS +K
Sbjct: 111 DGERCLDSVMCYDRLSFKWGESD-----PLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLN 165
Query: 326 ETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI-KKEPSNQVEVL 384
+ ++D K EW + T+ F + ++ G+ ++ EV
Sbjct: 166 KMCVYDPKKFEWKEL----APMQTARSLFGATVH----DGRIIVAAGVTDTGLTSSAEVY 217
Query: 385 SIEKNE 390
SI N+
Sbjct: 218 SITDNK 223
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 7e-14
Identities = 22/142 (15%), Positives = 39/142 (27%), Gaps = 26/142 (18%)
Query: 86 PIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIP 145
R A V ++IV G + GL +V + W + P
Sbjct: 184 QTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA------------FP 231
Query: 146 ACR-GHSLISWGKKVLLVGGKTDSGSDRV--------SVWTFDTETECWSVVEAKGDIPV 196
R SL+S + +GG ++ +W ++ E + W V +
Sbjct: 232 QERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV-----LRE 286
Query: 197 ARSGHTVVRASSVLILFGGEDG 218
L +
Sbjct: 287 IAYAAGATFLPVRLNVLRLTKM 308
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 3e-28
Identities = 53/378 (14%), Positives = 99/378 (26%), Gaps = 103/378 (27%)
Query: 84 DKPIPRFNHAAAVIGNKMIVVGGESGNGL--LDDVQVLNFDRFSWTAASSKLYLSPSSLP 141
+ P+P + A+ + + + G +G LD WTA +
Sbjct: 5 ETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLD----TQAKDKKWTALA----------A 50
Query: 142 LKIPACRGHSLISWGKKVLLVGGKTDSGSDRV----SVWTFDTETECWSVVEAKGDIPVA 197
+ + + GG + V ++ +T W + P+
Sbjct: 51 FPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWV--KLMSHAPMG 108
Query: 198 RSGHTVVRASSVLILFGGEDGKRRK---------------------------------LN 224
+GH + + GG +
Sbjct: 109 MAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNK 168
Query: 225 DLHMFDLKSLTWLPLHCTGTGPSP---RSNHVAALYDDKNLLIFGGSSKS-KTLNDLYSL 280
L FD + W G SP + DK + G +K + ++ L
Sbjct: 169 FLLSFDPSTQQWSYA-----GESPWYGTAGAAVVNKGDK-TWLINGEAKPGLRTDAVFEL 222
Query: 281 DFETMIWTRIKIRGF-HPSPRAGCCGVLCGTKWYIAGGGSRK-----------------K 322
DF K+ P AG + AGG K K
Sbjct: 223 DFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLK 282
Query: 323 RHAETLIFDILKGEWSVAITSPS-----SSVTSNKGFTLVLVQHKEKDFLVAFGGI--KK 375
+ T I G+W + S+ N + L+ GG
Sbjct: 283 KSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWN-------------NSLLIIGGETAGG 329
Query: 376 EPSNQVEVLSIEKNESSM 393
+ +++++ N+ ++
Sbjct: 330 KAVTDSVLITVKDNKVTV 347
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 2e-25
Identities = 46/279 (16%), Positives = 78/279 (27%), Gaps = 52/279 (18%)
Query: 81 IAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSL 140
+ P+ H V K V GG + N + LN TA
Sbjct: 101 LMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDK--------- 151
Query: 141 PLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP-VARS 199
K + + +FD T+ WS G+ P +
Sbjct: 152 ----------------INAHYFDKKAEDYFFNKFLLSFDPSTQQWSYA---GESPWYGTA 192
Query: 200 GHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKS--LTWLPLHCTGTGPSPRSNHVAALY 257
G VV L GE + + + D L W L + P + A +
Sbjct: 193 GAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKL-APVSSPDGVAGGFAGIS 251
Query: 258 DDKNLLI----FGGSSKSKTLNDLYSL------------DFETMIWTRIKIRGFHPSPRA 301
+D + F GS ++ Y+ + W + G RA
Sbjct: 252 NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS---GELSQGRA 308
Query: 302 GCCGVLCGTKWYIAGG-GSRKKRHAETLIFDILKGEWSV 339
+ I GG + K ++++ + + +V
Sbjct: 309 YGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 5e-06
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 80 SIAGDKPIPRFNHAAAVIGNKMIVVGGESGNG-LLDDVQVLNFD 122
+G+ R + N ++++GGE+ G + D ++
Sbjct: 298 DKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVK 341
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 57/294 (19%), Positives = 107/294 (36%), Gaps = 43/294 (14%)
Query: 86 PIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLN-FDRFS-----WTAASSKLYLSPSS 139
IPR + + N++ VVGG + D + + F + W
Sbjct: 44 QIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP--------- 94
Query: 140 LPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRV-SVWTFDTETECWSVVEAKGDIPVAR 198
PL C L K+ +V GK + SV +D WS V+ ++P+
Sbjct: 95 -PLPSARCL-FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK---NLPIKV 149
Query: 199 SGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYD 258
GH V+ + ++ GG+ ++ N + +++ K W L +PRS A++
Sbjct: 150 YGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL---APMKTPRSMFGVAIHK 206
Query: 259 DKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI-KIRGFHPSPRAGCCGVLCGTKWYIAGG 317
K ++I GG ++ + + D +T W + + P R+ V Y GG
Sbjct: 207 GK-IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEF----PQERSSISLVSLAGSLYAIGG 261
Query: 318 GSRKKRHAETL---------IFDILKGEWSVAITSPSS----SVTSNKGFTLVL 358
+ + ++ ++ K EW+ + S + + L
Sbjct: 262 FAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRYASGASCLATRLNLFKL 315
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 9e-14
Identities = 43/249 (17%), Positives = 77/249 (30%), Gaps = 38/249 (15%)
Query: 153 ISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLIL 212
+ +LLV + +D + + R+ ++V + + +
Sbjct: 12 MFVKDLILLVNDT--------AAVAYDPMENECYLTAL--AEQIPRNHSSIVTQQNQVYV 61
Query: 213 FGGEDGKRRK-----LNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGG 267
GG + D S W+ L PS R DDK + + G
Sbjct: 62 VGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL---PSARCLFGLGEVDDK-IYVVAG 117
Query: 268 SSKS--KTLNDLYSLDFETMIWTRIKIRGFHP--SPRAGCCGVLCGTKWYIAGG-GSRKK 322
+L+ + D W+ +K G + Y GG KK
Sbjct: 118 KDLQTEASLDSVLCYDPVAAKWSEVK-----NLPIKVYGHNVISHNGMIYCLGGKTDDKK 172
Query: 323 RHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI-KKEPSNQV 381
I++ KG+W + T F + + K +V GG+ + S V
Sbjct: 173 CTNRVFIYNPKKGDWKDL----APMKTPRSMFGVAIH----KGKIVIAGGVTEDGLSASV 224
Query: 382 EVLSIEKNE 390
E ++ N+
Sbjct: 225 EAFDLKTNK 233
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 55.3 bits (132), Expect = 5e-08
Identities = 48/303 (15%), Positives = 91/303 (30%), Gaps = 39/303 (12%)
Query: 82 AGDKPIPRFNHAAAVIGN-KMIVVGGE-SGNGLLDDVQVLNFDRFSWTAASSKLYLSPSS 139
D + R ++A + + ++ +GG SG + +V + +WT+ + ++P
Sbjct: 280 GPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPN-AKVNPML 338
Query: 140 LPLKIPACRGHSLISWGKKVLLVGGKT----DSGSDRVSVWTFDTETECW----SVVEAK 191
L L G K +G W + + + +
Sbjct: 339 TA------DKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNR 392
Query: 192 GDIPVARSGHTVVRASS---VLILFGGEDGKRRK-LNDLHMFDLKSL-----TWLPLHCT 242
G P A G+ V+ + +L G D + + H+ L T +
Sbjct: 393 GVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA---S 449
Query: 243 GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSL------DFETMIWTRIKIRGFH 296
R+ H + + D + I GG + D + E + +
Sbjct: 450 NGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV 509
Query: 297 PSPRAGCCGVLCGTKWYIAGG--GSRKKRHAETLIFD--ILKGEWSVAITSPSSSVTSNK 352
+ + G + GG G H + IF L T P + TS +
Sbjct: 510 RVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQ 569
Query: 353 GFT 355
Sbjct: 570 SVK 572
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 42.3 bits (98), Expect = 5e-04
Identities = 34/186 (18%), Positives = 58/186 (31%), Gaps = 25/186 (13%)
Query: 147 CRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA 206
C G S+ G+ V+ G+D +D+ ++ W D+ VAR +
Sbjct: 245 CPGISMDGNGQIVVT------GGNDAKKTSLYDSSSDSWIPG---PDMQVARGYQSSATM 295
Query: 207 S--SVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLI 264
S V + GG + ++ S TW L P ++ D + +
Sbjct: 296 SDGRVFTI-GGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWL 354
Query: 265 FGGSSKS---KTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKW--------- 312
FG S + + + + +K G S R +CG
Sbjct: 355 FGWKKGSVFQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKI 413
Query: 313 YIAGGG 318
GG
Sbjct: 414 LTFGGS 419
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-05
Identities = 73/572 (12%), Positives = 161/572 (28%), Gaps = 178/572 (31%)
Query: 239 LHCTGTGPSPRS-------NHVAALYDDKN--LLIF------GGSSKSKTLNDLYSLDFE 283
C P+S +H+ D + L +F K + ++ ++++
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 284 TMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITS 343
+ + IK PS T+ YI R + + + +F +++V+
Sbjct: 93 -FLMSPIKTEQRQPSMM---------TRMYIE---QRDRLYNDNQVFA----KYNVSRLQ 135
Query: 344 PSSSVTSNKGFTLVLVQHKEKDFLVAFG--GIKKEPSNQV---EVLSIEKNES------- 391
P + L++ + ++ G G K +V K +
Sbjct: 136 PYLKLRQ------ALLELRPAKNVLIDGVLGSGK----TWVALDVCLSYKVQCKMDFKIF 185
Query: 392 --SMGRRSTPNAK-GPGQLLFEKRSSSTGLACQLGNGAPQRSVDSVARQNLASAIEQHGS 448
++ ++P Q L + + + R + L ++
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS--IQAELRRLLKSK-P 242
Query: 449 GRKSLSEFALV-----DPNPI------------SGNVSLGKQFQNEEEYSTAVKMEKNS- 490
L LV + + + T + ++ +S
Sbjct: 243 YENCL----LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT--THISLDHHSM 296
Query: 491 ---EDETS--FVQTTENRKNQSDLGAQT--------SICVGKTNIDEAPLFDY---ENSN 534
DE ++ + R DL + SI + ++ D +D N +
Sbjct: 297 TLTPDEVKSLLLKYLDCRP--QDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCD 353
Query: 535 PLVQGIGNFHVDN-----------DNVIFPDNDK--SGALSG--PSSIYQFYESKMAALI 579
L I + ++ +FP + + LS I + L
Sbjct: 354 KLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 580 RKNGILEGQLAAALVNREAAEKNFS---------SVLKSRQEMEKKLADSLKEMELLKEK 630
+ +LV ++ E S L++ + + + D + +
Sbjct: 413 KY----------SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN----IPKT 458
Query: 631 LAGLELAQEEANS---------LSNIVHSDNV----RLEHDVAFLKA------------- 664
+L + L NI H + + + D FL+
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 665 -VLDDTQKV---------NCSYYTQLMHEFLH 686
+L+ Q++ N Y +L++ L
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
|
| >2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 2e-04
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 14/100 (14%)
Query: 571 YESKMAALIRKNGILEGQLAAALVNREAAEKNFSSVLKSRQEMEKKLADSLKEMELLKEK 630
E KM +L+++ L+ Q+ A N AE+ ++K++ ++E K+ + K +E +E
Sbjct: 39 LEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEM 98
Query: 631 LAGLELAQEEANSLSNIVHSDNVRLEHDVAFLKAVLDDTQ 670
A L + +LE + + LK +DD +
Sbjct: 99 NAELTAKKR--------------KLEDECSELKRDIDDLE 124
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 694 | ||||
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 3e-15 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 1e-11 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 3e-08 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 5e-08 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 1e-07 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 2e-05 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 2e-04 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.6 bits (181), Expect = 3e-15
Identities = 47/264 (17%), Positives = 78/264 (29%), Gaps = 22/264 (8%)
Query: 76 WMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYL 135
W+ L+ D +PR A V+G + VGG + + + T S
Sbjct: 31 WLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA- 86
Query: 136 SPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIP 195
+ R + + G + SV ++ E + W + +
Sbjct: 87 -------PMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL---VAPML 136
Query: 196 VARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255
R G V + +L GG D +LN + + W + T S
Sbjct: 137 TRRIGVGVAVLNRLLYAVGGFD-GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC--- 192
Query: 256 LYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIA 315
+ GG LN + D ET WT + R+ + + Y+
Sbjct: 193 -VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA---PMKHRRSALGITVHQGRIYVL 248
Query: 316 GGGSRKKRHAETLIFDILKGEWSV 339
GG +D WS
Sbjct: 249 GGYDGHTFLDSVECYDPDTDTWSE 272
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.8 bits (153), Expect = 1e-11
Identities = 46/306 (15%), Positives = 85/306 (27%), Gaps = 32/306 (10%)
Query: 97 IGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACR-GHSLISW 155
+G + GG L ++ N +W + + R G +
Sbjct: 3 VGRLIYTAGGYFRQSL-SYLEAYNPSNGTWLRLAD------------LQVPRSGLAGCVV 49
Query: 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGG 215
G + VGG+ +S D + + V R+ V + GG
Sbjct: 50 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG 109
Query: 216 EDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLN 275
G + + L R V ++ L GG + LN
Sbjct: 110 SHGCIHHNSVERYEPERDEWHLVAPML-----TRRIGVGVAVLNRLLYAVGGFDGTNRLN 164
Query: 276 DLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKG 335
E W I + R+G + Y AGG + + +D+
Sbjct: 165 SAECYYPERNEWRMIT---AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDV--- 218
Query: 336 EWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIK-KEPSNQVEVLSIEKNE-SSM 393
+ T + + + Q + + GG + VE + + S +
Sbjct: 219 -ETETWTFVAPMKHRRSALGITVHQGR----IYVLGGYDGHTFLDSVECYDPDTDTWSEV 273
Query: 394 GRRSTP 399
R ++
Sbjct: 274 TRMTSG 279
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (126), Expect = 3e-08
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 15/117 (12%)
Query: 88 PRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPAC 147
R V+ N + GG G L+ V+ + + +WT + +
Sbjct: 185 IRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH-----------RR 233
Query: 148 RGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVV 204
+ ++ ++GG D + SV +D +T+ WS V + RSG V
Sbjct: 234 SALGITVHQGRIYVLGG-YDGHTFLDSVECYDPDTDTWSEV---TRMTSGRSGVGVA 286
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.6 bits (124), Expect = 5e-08
Identities = 11/57 (19%), Positives = 21/57 (36%)
Query: 75 NWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASS 131
+ R V ++ V+GG G+ LD V+ + D +W+ +
Sbjct: 219 ETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTR 275
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 51.7 bits (122), Expect = 1e-07
Identities = 48/325 (14%), Positives = 88/325 (27%), Gaps = 30/325 (9%)
Query: 86 PIPRFNHAAAVIGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIP 145
PI A ++++ + + SW ++ + ++
Sbjct: 18 PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITL-TSSWDPSTGIVSDRTVTVTKHDM 76
Query: 146 ACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR 205
C G S+ G+ V G+D +D+ ++ W + +
Sbjct: 77 FCPGISMDGNGQIV------VTGGNDAKKTSLYDSSSDSW--IPGPDMQVARGYQSSATM 128
Query: 206 ASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL--------HCTGTGPSPRSNHVAALY 257
+ + GG + ++ S TW L RS++ A L+
Sbjct: 129 SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLF 188
Query: 258 DDKN--LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAG---CCGVLCGTKW 312
K + G S+ S D R RG P G + G
Sbjct: 189 GWKKGSVFQAGPSTAMNWYYTSGSGDV-KSAGKRQSNRGVAPDAMCGNAVMYDAVKGKIL 247
Query: 313 YIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGG 372
G + A T I GE + + +S T GG
Sbjct: 248 TFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGG 307
Query: 373 IKK-------EPSNQVEVLSIEKNE 390
++ P E+ E++
Sbjct: 308 QRRGIPFEDSTPVFTPEIYVPEQDT 332
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 44.8 bits (104), Expect = 2e-05
Identities = 19/158 (12%), Positives = 42/158 (26%), Gaps = 14/158 (8%)
Query: 185 WSVVEAKGDIPVARSGHTVVRASSVLILFGGED-----GKRRKLNDLHMFDLKSLTWLPL 239
W D+P+ + + S ++++ G + +D +
Sbjct: 11 WGPT---IDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR 67
Query: 240 HCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSP 299
T T ++ + +++ GG+ KT D + W
Sbjct: 68 TVTVT-KHDMFCPGISMDGNGQIVVTGGNDAKKT----SLYDSSSDSWIPGPDMQVARG- 121
Query: 300 RAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEW 337
+ G + I G S ++ W
Sbjct: 122 YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 159
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 41.7 bits (96), Expect = 2e-04
Identities = 24/226 (10%), Positives = 49/226 (21%), Gaps = 24/226 (10%)
Query: 72 NSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGN------GLLDDVQVLNFDRFS 125
+S+ W L A P+ + + + G
Sbjct: 155 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD 214
Query: 126 WTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECW 185
+A + C + K +L G + D + T
Sbjct: 215 VKSAGK---RQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGE 271
Query: 186 SVVEAKGDIPVARSGHTVVRASSV------LILFGGEDGKRRK-----LNDLHMFDLKSL 234
+SV + GG+ + ++ +
Sbjct: 272 PGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD 331
Query: 235 TWLPLHCTGTGPSPRSNH-VAALYDDKNLLIFGGSSKSKTLNDLYS 279
T+ R H ++ L D + GG + +
Sbjct: 332 TFYKQ---NPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFD 374
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 694 | |||
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 100.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 95.76 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 95.03 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 93.66 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 93.47 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 92.98 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 91.92 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 91.42 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 89.2 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 88.75 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 87.93 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 86.92 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 86.46 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 86.43 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 83.68 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 81.88 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.7e-41 Score=289.38 Aligned_cols=282 Identities=18% Similarity=0.267 Sum_probs=246.8
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCCCC----CCCCC
Q ss_conf 48995998338999977644556754457888899965993006999987530299999999999958789----97767
Q 005493 39 PNSECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESG----NGLLD 114 (694)
Q Consensus 39 ~~~~~i~i~GG~~~~~~~~~~~~~~d~~~~~~~~s~~W~~l~~~~~~P~~R~~~s~~~v~~~lyi~GG~~~----~~~~~ 114 (694)
.+++.||++||.... .....++||+ .+++|+.++ ++|.+|.+|++++++++||++||... ....+
T Consensus 2 ~~g~~iyv~GG~~~~--~~~~~~~yd~------~t~~W~~~~---~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 70 (288)
T d1zgka1 2 KVGRLIYTAGGYFRQ--SLSYLEAYNP------SNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSS 70 (288)
T ss_dssp CCCCCEEEECCBSSS--BCCCEEEEET------TTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECC
T ss_pred CCCCEEEEECCCCCC--CCCEEEEEEC------CCCEEEECC---CCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCC
T ss_conf 869899998986899--8865999989------999698899---99986514699999999999958646778853223
Q ss_pred CEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCC
Q ss_conf 38999879994899324655699999999997531499998999999942069999951799999999939994214999
Q 005493 115 DVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDI 194 (694)
Q Consensus 115 ~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~ 194 (694)
++++||+.+++|+.++++ +.+|..|+++.+++++|++||... ....+..+.|++.++.|...+ .+
T Consensus 71 ~~~~yd~~~~~w~~~~~~-----------p~~r~~~~~~~~~~~i~~~gg~~~-~~~~~~~~~~~~~~~~~~~~~---~~ 135 (288)
T d1zgka1 71 ALDCYNPMTNQWSPCAPM-----------SVPRNRIGVGVIDGHIYAVGGSHG-CIHHNSVERYEPERDEWHLVA---PM 135 (288)
T ss_dssp CEEEEETTTTEEEECCCC-----------SSCCBTCEEEEETTEEEEECCEET-TEECCCEEEEETTTTEEEECC---CC
T ss_pred HHHHCCCCCCCCCCCCCC-----------CCEECCEECCCCCEEEEEECCEEC-CCCCCEEEEECCCCCCCCCCC---CC
T ss_conf 011000134643111333-----------110200002343203588410103-664210000001568631123---22
Q ss_pred CCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCC
Q ss_conf 97650029999899499982435999644626884178983898225899999760019999899489999088999888
Q 005493 195 PVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTL 274 (694)
Q Consensus 195 p~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~i~~yd~~t~~W~~l~~~g~~P~~r~~~s~~~~~~~~lyi~GG~~~~~~~ 274 (694)
+..|.+|+++...+.+|++||.... ...++++.||+.+++|.... ..+.++..++++..++. ++++||.......
T Consensus 136 ~~~r~~~~~~~~~~~~~~~GG~~~~-~~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~-i~i~GG~~~~~~~ 210 (288)
T d1zgka1 136 LTRRIGVGVAVLNRLLYAVGGFDGT-NRLNSAECYYPERNEWRMIT---AMNTIRSGAGVCVLHNC-IYAAGGYDGQDQL 210 (288)
T ss_dssp SSCCBSCEEEEETTEEEEECCBCSS-CBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTE-EEEECCBCSSSBC
T ss_pred CCCCCCCEEEEEEECCEEECCCCCC-CCCCEEEEEECCCCCCCCCC---CCCCCCCCCCCCCEEEE-EEEECCCCCCCCC
T ss_conf 1011000121221110472686534-33422788604553000001---21244322444100016-9985473225643
Q ss_pred CEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 90999996999299942169999999640899989999999277899876819999989991899221899998888671
Q 005493 275 NDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGF 354 (694)
Q Consensus 275 ~~i~~yd~~t~~W~~l~~~g~~p~~R~~~sa~~~~~~iyIiGG~~~~~~~~~i~~yd~~t~~W~~l~~~~~~~p~~r~~~ 354 (694)
++.+.||..++.|..+... |.+|.+|+++.++++|||+||.+.....+++++||+.+++|+.+. .+|.+|.+|
T Consensus 211 ~~~~~~~~~~~~~~~~~~~---p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~----~~p~~R~~~ 283 (288)
T d1zgka1 211 NSVERYDVETETWTFVAPM---KHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVT----RMTSGRSGV 283 (288)
T ss_dssp CCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE----ECSSCCBSC
T ss_pred CCEEEEEECCEEEECCCCC---CCCCCCEEEEEECCEEEEEECCCCCEECCEEEEEECCCCEEEECC----CCCCCCEEE
T ss_conf 5205664101000003676---676651489999999999956799954563999979999898889----999775768
Q ss_pred EEEE
Q ss_conf 9999
Q 005493 355 TLVL 358 (694)
Q Consensus 355 s~v~ 358 (694)
++++
T Consensus 284 ~~~~ 287 (288)
T d1zgka1 284 GVAV 287 (288)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 8998
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.5e-39 Score=275.61 Aligned_cols=266 Identities=18% Similarity=0.253 Sum_probs=233.9
Q ss_pred ECCEEEEECCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCCCCC---CCCCC
Q ss_conf 999999995878997767389998799948993246556999999999975314999989999999420699---99951
Q 005493 97 IGNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDS---GSDRV 173 (694)
Q Consensus 97 v~~~lyi~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~---~~~~~ 173 (694)
+++.||+|||... ..++++++||+.+++|+.+++ +| .+|.+|+++.++++||++||.... ....+
T Consensus 3 ~g~~iyv~GG~~~-~~~~~~~~yd~~t~~W~~~~~----------~p-~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 70 (288)
T d1zgka1 3 VGRLIYTAGGYFR-QSLSYLEAYNPSNGTWLRLAD----------LQ-VPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSS 70 (288)
T ss_dssp CCCCEEEECCBSS-SBCCCEEEEETTTTEEEECCC----------CS-SCCBSCEEEEETTEEEEECCEEEETTEEEECC
T ss_pred CCCEEEEECCCCC-CCCCEEEEEECCCCEEEECCC----------CC-CCCCEEEEEEECCEEEEEECCCCCCCCCCCCC
T ss_conf 6989999898689-988659999899996988999----------99-86514699999999999958646778853223
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCEEE
Q ss_conf 79999999993999421499997650029999899499982435999644626884178983898225899999760019
Q 005493 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (694)
Q Consensus 174 ~v~~yD~~t~~W~~l~~~g~~p~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~i~~yd~~t~~W~~l~~~g~~P~~r~~~s 253 (694)
++|+||+.+++|+.++ ++|.+|..|+++++++++|++||.... ..+++++.|++.++.|.... .+|.+|++|+
T Consensus 71 ~~~~yd~~~~~w~~~~---~~p~~r~~~~~~~~~~~i~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~r~~~~ 143 (288)
T d1zgka1 71 ALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVA---PMLTRRIGVG 143 (288)
T ss_dssp CEEEEETTTTEEEECC---CCSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECC---CCSSCCBSCE
T ss_pred HHHHCCCCCCCCCCCC---CCCCEECCEECCCCCEEEEEECCEECC-CCCCEEEEECCCCCCCCCCC---CCCCCCCCCE
T ss_conf 0110001346431113---331102000023432035884101036-64210000001568631123---2210110001
Q ss_pred EEEECCCEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCCEEEEEECC
Q ss_conf 99989948999908899988890999996999299942169999999640899989999999277899876819999989
Q 005493 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (694)
Q Consensus 254 ~~~~~~~~lyi~GG~~~~~~~~~i~~yd~~t~~W~~l~~~g~~p~~R~~~sa~~~~~~iyIiGG~~~~~~~~~i~~yd~~ 333 (694)
++.+.+. ++++||.......++++.||+.++.|...... +.++..++++..+++||++||........+.+.||+.
T Consensus 144 ~~~~~~~-~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~ 219 (288)
T d1zgka1 144 VAVLNRL-LYAVGGFDGTNRLNSAECYYPERNEWRMITAM---NTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVE 219 (288)
T ss_dssp EEEETTE-EEEECCBCSSCBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred EEEEEEC-CEEECCCCCCCCCCEEEEEECCCCCCCCCCCC---CCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEC
T ss_conf 2122111-04726865343342278860455300000121---2443224441000169985473225643520566410
Q ss_pred CCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCC-CCCEEEEECCCCCCCC
Q ss_conf 99189922189999888867199999556982999994899999-9928999774687677
Q 005493 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEP-SNQVEVLSIEKNESSM 393 (694)
Q Consensus 334 t~~W~~l~~~~~~~p~~r~~~s~v~~~~~~~~~I~v~GG~~~~~-~~~i~~~d~~~~~w~~ 393 (694)
+++|..++ ..|.+|.+|+++.+. ++||+|||.+... .+++|+||+.+++|..
T Consensus 220 ~~~~~~~~----~~p~~r~~~~~~~~~----~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~ 272 (288)
T d1zgka1 220 TETWTFVA----PMKHRRSALGITVHQ----GRIYVLGGYDGHTFLDSVECYDPDTDTWSE 272 (288)
T ss_dssp TTEEEECC----CCSSCCBSCEEEEET----TEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred CEEEECCC----CCCCCCCCEEEEEEC----CEEEEEECCCCCEECCEEEEEECCCCEEEE
T ss_conf 10000036----766766514899999----999999567999545639999799998988
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=100.00 E-value=2.9e-31 Score=224.58 Aligned_cols=330 Identities=12% Similarity=0.067 Sum_probs=212.5
Q ss_pred CCCCCCCCCCCCC--CC---CCCCCCCEEEEECCCCCCCC-----CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 7643378999999--87---32448995998338999977-----64455675445788889996599300699998753
Q 005493 21 DSAQAIRSPIRPP--KR---NSNPNSECVAPSSNHADDRD-----CECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRF 90 (694)
Q Consensus 21 d~~~~s~~p~~~s--~r---~~~~~~~~i~i~GG~~~~~~-----~~~~~~~~d~~~~~~~~s~~W~~l~~~~~~P~~R~ 90 (694)
-|..+.|++..+. .+ +.+..+..|+++||..++.. .......||+ .+++|..++.. ..|..++
T Consensus 5 ~p~~g~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~------~t~~w~~~~~~-~~~~~~~ 77 (387)
T d1k3ia3 5 QPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDP------STGIVSDRTVT-VTKHDMF 77 (387)
T ss_dssp CTTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECT------TTCCBCCCEEE-ECSCCCS
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEEC------CCCCEEECCCC-CCCCCCC
T ss_conf 8978716786889861017899925999999984057666788776068999988------88968666778-9874452
Q ss_pred CEEEEEE-CCEEEEECCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEE-CCEEEEECCCCCC
Q ss_conf 0299999-9999999587899776738999879994899324655699999999997531499998-9999999420699
Q 005493 91 NHAAAVI-GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW-GKKVLLVGGKTDS 168 (694)
Q Consensus 91 ~~s~~~v-~~~lyi~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~p~r~~~s~v~~-~~~Iyv~GG~~~~ 168 (694)
.++.+++ ++++|++||... +++++||+.++.|...+.+ +.+|..|+++.+ ++++|++||....
T Consensus 78 ~~~~~~~~~g~i~v~Gg~~~----~~~~~yd~~~~~w~~~~~~-----------~~~r~~~~~~~~~dG~v~v~GG~~~~ 142 (387)
T d1k3ia3 78 CPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDM-----------QVARGYQSSATMSDGRVFTIGGSWSG 142 (387)
T ss_dssp SCEEEECTTSCEEEECSSST----TCEEEEEGGGTEEEECCCC-----------SSCCSSCEEEECTTSCEEEECCCCCS
T ss_pred EEEEEEECCCCEEEEECCCC----CCEEEECCCCCCCCCCCCC-----------CCCCCCCCEEEECCCCEEEECCCCCC
T ss_conf 56899946886898636888----6216756755744215656-----------64210130355317826652136633
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCCCCEEE-----------EEEEECCEEEEECCCCCCCCCCCCEEEEECCCCCEE
Q ss_conf 999517999999999399942149999765002-----------999989949998243599964462688417898389
Q 005493 169 GSDRVSVWTFDTETECWSVVEAKGDIPVARSGH-----------TVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWL 237 (694)
Q Consensus 169 ~~~~~~v~~yD~~t~~W~~l~~~g~~p~~R~~~-----------s~~~~~~~iyv~GG~~~~~~~~~~i~~yd~~t~~W~ 237 (694)
....+++++||+.+++|..++.....+.....+ .....++++|++|| ....++.|++.+..|.
T Consensus 143 ~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~------~~~~~~~~~~~~~~~~ 216 (387)
T d1k3ia3 143 GVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGP------STAMNWYYTSGSGDVK 216 (387)
T ss_dssp SSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCS------SSEEEEEECSTTCEEE
T ss_pred CCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCEEEECC------CCCCEEECCCCCCCEE
T ss_conf 3543205663488895511588764431134665136504226999707987787468------6774781486667173
Q ss_pred ECCCC----CCCCCCCCEEEEEEE-CCCEEEEECCCCCCC---CCCEEEEEEC-----CCCCEEEEECCCCCCCCCCCEE
Q ss_conf 82258----999997600199998-994899990889998---8890999996-----9992999421699999996408
Q 005493 238 PLHCT----GTGPSPRSNHVAALY-DDKNLLIFGGSSKSK---TLNDLYSLDF-----ETMIWTRIKIRGFHPSPRAGCC 304 (694)
Q Consensus 238 ~l~~~----g~~P~~r~~~s~~~~-~~~~lyi~GG~~~~~---~~~~i~~yd~-----~t~~W~~l~~~g~~p~~R~~~s 304 (694)
..... ...+.++.++++... .+..+|++||..... .......++. ....|..+ ..+|.+|..|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~r~~~~ 293 (387)
T d1k3ia3 217 SAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS---NGLYFARTFHT 293 (387)
T ss_dssp EEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT---TCCSSCCBSCE
T ss_pred ECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEC---CCCCCCCCCCE
T ss_conf 166556676657632226378861358824788753678877521000001111135678840603---66566543433
Q ss_pred EEEE-CCEEEEECCCCCC------CCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCC-
Q ss_conf 9998-9999999277899------8768199999899918992218999988886719999955698299999489999-
Q 005493 305 GVLC-GTKWYIAGGGSRK------KRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKE- 376 (694)
Q Consensus 305 a~~~-~~~iyIiGG~~~~------~~~~~i~~yd~~t~~W~~l~~~~~~~p~~r~~~s~v~~~~~~~~~I~v~GG~~~~- 376 (694)
++++ +++|||+||.... .....+++||+.+++|+.++ .++.+|..|+++++.. +++|||+||....
T Consensus 294 ~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~----~~~~~R~~Hs~a~l~~--dG~v~v~GG~~~~~ 367 (387)
T d1k3ia3 294 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN----PNSIVRVYHSISLLLP--DGRVFNGGGGLCGD 367 (387)
T ss_dssp EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC----CCSSCCCTTEEEEECT--TSCEEEEECCCCTT
T ss_pred EEECCCCEEEEECCCCCCCCCCCCCEECEEEEEECCCCEEEECC----CCCCCCCCEEEEEECC--CCEEEEEECCCCCC
T ss_conf 56605874999888456766889947010798979999188788----9997553127999988--99999996987678
Q ss_pred ---CCCCEEEEECC
Q ss_conf ---99928999774
Q 005493 377 ---PSNQVEVLSIE 387 (694)
Q Consensus 377 ---~~~~i~~~d~~ 387 (694)
...++++|+|.
T Consensus 368 ~~~~~~~~e~y~Pp 381 (387)
T d1k3ia3 368 CTTNHFDAQIFTPN 381 (387)
T ss_dssp CSCCCCEEEEEECG
T ss_pred CCCCCCEEEEECCH
T ss_conf 88661148998260
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.97 E-value=3.2e-29 Score=210.80 Aligned_cols=310 Identities=12% Similarity=0.057 Sum_probs=213.7
Q ss_pred CCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCCCCCC------CCCCEEEEECCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 89996599300699998753029999999999995878997------767389998799948993246556999999999
Q 005493 71 GNSENWMVLSIAGDKPIPRFNHAAAVIGNKMIVVGGESGNG------LLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKI 144 (694)
Q Consensus 71 ~~s~~W~~l~~~~~~P~~R~~~s~~~v~~~lyi~GG~~~~~------~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~ 144 (694)
|..+.|+... ++|..+.+++++..+++||+|||..... ....+++||+.+++|...+++ +.
T Consensus 6 p~~g~W~~~~---~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~----------~~ 72 (387)
T d1k3ia3 6 PGLGRWGPTI---DLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT----------VT 72 (387)
T ss_dssp TTSCEEEEEE---ECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE----------EC
T ss_pred CCCCCCCCCC---CCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCC----------CC
T ss_conf 9787167868---8986101789992599999998405766678877606899998888968666778----------98
Q ss_pred CC-CCCEEEEE-ECCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEEEE-CCEEEEECCCCCCCC
Q ss_conf 97-53149999-8999999942069999951799999999939994214999976500299998-994999824359996
Q 005493 145 PA-CRGHSLIS-WGKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGEDGKRR 221 (694)
Q Consensus 145 p~-r~~~s~v~-~~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~p~~R~~~s~~~~-~~~iyv~GG~~~~~~ 221 (694)
+. +..++.+. .+++||++||... +++++||+.+++|+..+ +||.+|..|+++.+ ++++|++||......
T Consensus 73 ~~~~~~~~~~~~~~g~i~v~Gg~~~-----~~~~~yd~~~~~w~~~~---~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~ 144 (387)
T d1k3ia3 73 KHDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSWSGGV 144 (387)
T ss_dssp SCCCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCCCSSS
T ss_pred CCCCCEEEEEEECCCCEEEEECCCC-----CCEEEECCCCCCCCCCC---CCCCCCCCCCEEEECCCCEEEECCCCCCCC
T ss_conf 7445256899946886898636888-----62167567557442156---566421013035531782665213663335
Q ss_pred CCCCEEEEECCCCCEEECCCCCCCCCCCCEEE----------EEE-ECCCEEEEECCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 44626884178983898225899999760019----------999-8994899990889998889099999699929994
Q 005493 222 KLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV----------AAL-YDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRI 290 (694)
Q Consensus 222 ~~~~i~~yd~~t~~W~~l~~~g~~P~~r~~~s----------~~~-~~~~~lyi~GG~~~~~~~~~i~~yd~~t~~W~~l 290 (694)
.++++++||+.+++|+.+......+.....+. +.. .+++ ++++||. ...++.|++.+..|...
T Consensus 145 ~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~g~~-----~~~~~~~~~~~~~~~~~ 218 (387)
T d1k3ia3 145 FEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGS-VFQAGPS-----TAMNWYYTSGSGDVKSA 218 (387)
T ss_dssp CCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGC-EEECCSS-----SEEEEEECSTTCEEEEE
T ss_pred CCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCEEECCCEEEEEEECCCC-EEEECCC-----CCCEEECCCCCCCEEEC
T ss_conf 43205663488895511588764431134665136504226999707987-7874686-----77478148666717316
Q ss_pred ECCCC----CCCCCCCEEEEE--ECCEEEEECCCCCCCC---CCEEEEEEC-----CCCCEEEEECCCCCCCCCCCCCEE
Q ss_conf 21699----999996408999--8999999927789987---681999998-----999189922189999888867199
Q 005493 291 KIRGF----HPSPRAGCCGVL--CGTKWYIAGGGSRKKR---HAETLIFDI-----LKGEWSVAITSPSSSVTSNKGFTL 356 (694)
Q Consensus 291 ~~~g~----~p~~R~~~sa~~--~~~~iyIiGG~~~~~~---~~~i~~yd~-----~t~~W~~l~~~~~~~p~~r~~~s~ 356 (694)
..... .+..+.++++.. .++++|++||...... ......++. ....|..+. .+|.+|..|++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~r~~~~~ 294 (387)
T d1k3ia3 219 GKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN----GLYFARTFHTS 294 (387)
T ss_dssp EECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT----CCSSCCBSCEE
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEECC----CCCCCCCCCEE
T ss_conf 65566766576322263788613588247887536788775210000011111356788406036----65665434335
Q ss_pred EEEEECCCCEEEEECCCCC-------CCCCCEEEEECCCCCCCC--------CCCCCC-CCCCCCCCEECCCCC
Q ss_conf 9995569829999948999-------999928999774687677--------854667-988997201114678
Q 005493 357 VLVQHKEKDFLVAFGGIKK-------EPSNQVEVLSIEKNESSM--------GRRSTP-NAKGPGQLLFEKRSS 414 (694)
Q Consensus 357 v~~~~~~~~~I~v~GG~~~-------~~~~~i~~~d~~~~~w~~--------~w~~~~-~~~~~~~~~fgg~~~ 414 (694)
+++. ++.||++||... .....+++||+.+++|+. ..|++. ...++++++|||...
T Consensus 295 ~~~~---dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~~~ 365 (387)
T d1k3ia3 295 VVLP---DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLC 365 (387)
T ss_dssp EECT---TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCC
T ss_pred EECC---CCEEEEECCCCCCCCCCCCCEECEEEEEECCCCEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCC
T ss_conf 6605---8749998884567668899470107989799991887889997553127999988999999969876
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.76 E-value=0.045 Score=28.17 Aligned_cols=149 Identities=11% Similarity=0.152 Sum_probs=70.0
Q ss_pred CCEEEEECCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCEEEEEECCCCC
Q ss_conf 99499982435999644626884178983898225899999760019999899489999088999888909999969992
Q 005493 207 SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMI 286 (694)
Q Consensus 207 ~~~iyv~GG~~~~~~~~~~i~~yd~~t~~W~~l~~~g~~P~~r~~~s~~~~~~~~lyi~GG~~~~~~~~~i~~yd~~t~~ 286 (694)
++.+++.|+.+ ..+.+||+.+.....+... .....-.+++...+...++.|+.++ .+..||+.++.
T Consensus 147 ~~~~l~~g~~d------g~i~~~d~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~~~~~~~~ 212 (299)
T d1nr0a2 147 DKQFVAVGGQD------SKVHVYKLSGASVSEVKTI---VHPAEITSVAFSNNGAFLVATDQSR-----KVIPYSVANNF 212 (299)
T ss_dssp TSCEEEEEETT------SEEEEEEEETTEEEEEEEE---ECSSCEEEEEECTTSSEEEEEETTS-----CEEEEEGGGTT
T ss_pred CCCCCCCCCCC------CCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCC
T ss_conf 11111111111------1111111111111111111---1111111111111111111111111-----11111111111
Q ss_pred EEEEECCCCCCCCCCCEEEEEE--CCEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 9994216999999964089998--99999992778998768199999899918992218999988886719999955698
Q 005493 287 WTRIKIRGFHPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEK 364 (694)
Q Consensus 287 W~~l~~~g~~p~~R~~~sa~~~--~~~iyIiGG~~~~~~~~~i~~yd~~t~~W~~l~~~~~~~p~~r~~~s~v~~~~~~~ 364 (694)
....... ..........+.+ ++.+++.|+.++. +.+||+.+............ .......+... . +
T Consensus 213 ~~~~~~~--~~~h~~~v~~l~~s~~~~~l~sgs~dg~-----i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~~-~-~ 280 (299)
T d1nr0a2 213 ELAHTNS--WTFHTAKVACVSWSPDNVRLATGSLDNS-----VIVWNMNKPSDHPIIIKGAH---AMSSVNSVIWL-N-E 280 (299)
T ss_dssp EESCCCC--CCCCSSCEEEEEECTTSSEEEEEETTSC-----EEEEETTCTTSCCEEETTSS---TTSCEEEEEEE-E-T
T ss_pred CCCCCCC--CCCCCCCCCCCCCCCCCCCEEEECCCCE-----EEEEECCCCCCCEEEEECCC---CCCCEEEEEEC-C-C
T ss_conf 1111111--1111111111124666451388828997-----99998999973148983489---88968999977-9-8
Q ss_pred CEEEEECCCCCCCCCCEEEEEC
Q ss_conf 2999994899999992899977
Q 005493 365 DFLVAFGGIKKEPSNQVEVLSI 386 (694)
Q Consensus 365 ~~I~v~GG~~~~~~~~i~~~d~ 386 (694)
. .++.||.++ .+-++++
T Consensus 281 ~-~l~s~s~D~----~i~iWdl 297 (299)
T d1nr0a2 281 T-TIVSAGQDS----NIKFWNV 297 (299)
T ss_dssp T-EEEEEETTS----CEEEEEC
T ss_pred C-EEEEEECCC----EEEEEEC
T ss_conf 9-999992899----7999944
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.03 E-value=0.078 Score=26.58 Aligned_cols=156 Identities=13% Similarity=0.208 Sum_probs=65.8
Q ss_pred EECCEEEEECCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCEEEEEECCC
Q ss_conf 98994999824359996446268841789838982258999997600199998994899990889998889099999699
Q 005493 205 RASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFET 284 (694)
Q Consensus 205 ~~~~~iyv~GG~~~~~~~~~~i~~yd~~t~~W~~l~~~g~~P~~r~~~s~~~~~~~~lyi~GG~~~~~~~~~i~~yd~~t 284 (694)
..++..++.|+.++ .+.+||+...+-.... ..... .-.+....++ +++.|+.++ .+.+||...
T Consensus 184 ~~~~~~l~s~~~dg------~i~~~d~~~~~~~~~~---~~~~~--~v~~~~~~~~-~l~s~s~d~-----~i~iwd~~~ 246 (342)
T d2ovrb2 184 QFDGIHVVSGSLDT------SIRVWDVETGNCIHTL---TGHQS--LTSGMELKDN-ILVSGNADS-----TVKIWDIKT 246 (342)
T ss_dssp EECSSEEEEEETTS------CEEEEETTTCCEEEEE---CCCCS--CEEEEEEETT-EEEEEETTS-----CEEEEETTT
T ss_pred CCCCCEEEEEECCC------EEEEEECCCCEEEEEE---CCCCC--CEEEEECCCC-EEEEECCCC-----EEEEEECCC
T ss_conf 68999999995899------3999525565365674---16653--2057706899-999974898-----899986554
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCCEEEEEECCCCCEEE-EECCCCCCCCCCCCCEEEEEEECC
Q ss_conf 9299942169999999640899989999999277899876819999989991899-221899998888671999995569
Q 005493 285 MIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDILKGEWSV-AITSPSSSVTSNKGFTLVLVQHKE 363 (694)
Q Consensus 285 ~~W~~l~~~g~~p~~R~~~sa~~~~~~iyIiGG~~~~~~~~~i~~yd~~t~~W~~-l~~~~~~~p~~r~~~s~v~~~~~~ 363 (694)
......-.. .........++..++.+++.|+.++. +.+||+.+.+... +..... .........+....
T Consensus 247 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~s~Dg~-----i~iwd~~tg~~i~~~~~~~~----~~~~~~v~~v~~s~ 315 (342)
T d2ovrb2 247 GQCLQTLQG--PNKHQSAVTCLQFNKNFVITSSDDGT-----VKLWDLKTGEFIRNLVTLES----GGSGGVVWRIRASN 315 (342)
T ss_dssp CCEEEEECS--TTSCSSCEEEEEECSSEEEEEETTSE-----EEEEETTTCCEEEEEEECTT----GGGTCEEEEEEECS
T ss_pred CCCCCCCCC--CCEEEECEEECCCCCCEEEEECCCCE-----EEEEECCCCCEEEEEECCCC----CCCCCCEEEEEECC
T ss_conf 422111221--00011010000137984499908998-----99999999979899862347----89889789999879
Q ss_pred CCEEEEECCCCCCCCCCEEEEECCC
Q ss_conf 8299999489999999289997746
Q 005493 364 KDFLVAFGGIKKEPSNQVEVLSIEK 388 (694)
Q Consensus 364 ~~~I~v~GG~~~~~~~~i~~~d~~~ 388 (694)
...+++.|+.++.....++++|...
T Consensus 316 ~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 316 TKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCEEEEEECCCCCEEEEEEEECCC
T ss_conf 9989999968999704899993899
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=93.66 E-value=0.15 Score=24.63 Aligned_cols=108 Identities=10% Similarity=0.094 Sum_probs=43.7
Q ss_pred EEEEECCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 49998243599964462688417898389822589999976001999989948999908899988890999996999299
Q 005493 209 VLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWT 288 (694)
Q Consensus 209 ~iyv~GG~~~~~~~~~~i~~yd~~t~~W~~l~~~g~~P~~r~~~s~~~~~~~~lyi~GG~~~~~~~~~i~~yd~~t~~W~ 288 (694)
.+++.|+.++ .+.+||..+.+...... .. ...-.++....+..+++.|+.++ .+..||..+..-.
T Consensus 160 ~~l~sgs~d~------~i~i~d~~~~~~~~~~~--~~--~~~i~~v~~~p~~~~l~~~~~d~-----~v~~~d~~~~~~~ 224 (311)
T d1nr0a1 160 FRIISGSDDN------TVAIFEGPPFKFKSTFG--EH--TKFVHSVRYNPDGSLFASTGGDG-----TIVLYNGVDGTKT 224 (311)
T ss_dssp CEEEEEETTS------CEEEEETTTBEEEEEEC--CC--SSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEE
T ss_pred EEECCCCCCC------CCCCCCCCCCCCCCCCC--CC--CCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCC
T ss_conf 1200011221------11111111111111111--11--11111123476422121111111-----1100012446411
Q ss_pred EEECCCCCCCCCCC----EEEEEE--CCEEEEECCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 94216999999964----089998--999999927789987681999998999189
Q 005493 289 RIKIRGFHPSPRAG----CCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWS 338 (694)
Q Consensus 289 ~l~~~g~~p~~R~~----~sa~~~--~~~iyIiGG~~~~~~~~~i~~yd~~t~~W~ 338 (694)
..-.. ......+ ...+.+ ++..++.||.++ .+.+||+.+....
T Consensus 225 ~~~~~--~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg-----~v~iwd~~t~~~~ 273 (311)
T d1nr0a1 225 GVFED--DSLKNVAHSGSVFGLTWSPDGTKIASASADK-----TIKIWNVATLKVE 273 (311)
T ss_dssp EECBC--TTSSSCSSSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEE
T ss_pred CCCCC--CCCCCCCCCCCCCCCCCCCCCCEEEEEECCC-----EEEEEECCCCCEE
T ss_conf 22211--1111100246532102478899999993799-----6999999999699
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=93.47 E-value=0.16 Score=24.42 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=60.1
Q ss_pred EEEEECCCEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEE-CCEEEEECCCCCCCCCCEEEEEE
Q ss_conf 99998994899990889998889099999699929994216999999964089998-99999992778998768199999
Q 005493 253 VAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC-GTKWYIAGGGSRKKRHAETLIFD 331 (694)
Q Consensus 253 s~~~~~~~~lyi~GG~~~~~~~~~i~~yd~~t~~W~~l~~~g~~p~~R~~~sa~~~-~~~iyIiGG~~~~~~~~~i~~yd 331 (694)
+++...+..+++.|+.++ .+..||+.+.....+.... ....-.+++.. ++..++.|+.++. +++||
T Consensus 141 ~~~~s~~~~~l~~g~~dg-----~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d~~-----i~~~~ 207 (299)
T d1nr0a2 141 CVALSNDKQFVAVGGQDS-----KVHVYKLSGASVSEVKTIV---HPAEITSVAFSNNGAFLVATDQSRK-----VIPYS 207 (299)
T ss_dssp EEEECTTSCEEEEEETTS-----EEEEEEEETTEEEEEEEEE---CSSCEEEEEECTTSSEEEEEETTSC-----EEEEE
T ss_pred CCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCC
T ss_conf 221111111111111111-----1111111111111111111---1111111111111111111111111-----11111
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCC
Q ss_conf 89991899221899998888671999995569829999948999999928999774687
Q 005493 332 ILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 332 ~~t~~W~~l~~~~~~~p~~r~~~s~v~~~~~~~~~I~v~GG~~~~~~~~i~~~d~~~~~ 390 (694)
+.+........ . ..........+.+. ++ +.+++.|+.++ .+.+|++....
T Consensus 208 ~~~~~~~~~~~-~--~~~h~~~v~~l~~s-~~-~~~l~sgs~dg----~i~iwd~~~~~ 257 (299)
T d1nr0a2 208 VANNFELAHTN-S--WTFHTAKVACVSWS-PD-NVRLATGSLDN----SVIVWNMNKPS 257 (299)
T ss_dssp GGGTTEESCCC-C--CCCCSSCEEEEEEC-TT-SSEEEEEETTS----CEEEEETTCTT
T ss_pred CCCCCCCCCCC-C--CCCCCCCCCCCCCC-CC-CCCEEEECCCC----EEEEEECCCCC
T ss_conf 11111111111-1--11111111111246-66-45138882899----79999899997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.98 E-value=0.19 Score=23.94 Aligned_cols=197 Identities=10% Similarity=0.038 Sum_probs=94.7
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEEE-ECCEEEEECCCCCCCCCCCCEEEEECCCC
Q ss_conf 99999994206999995179999999993999421499997650029999-89949998243599964462688417898
Q 005493 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVR-ASSVLILFGGEDGKRRKLNDLHMFDLKSL 234 (694)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~p~~R~~~s~~~-~~~~iyv~GG~~~~~~~~~~i~~yd~~t~ 234 (694)
++.+++.|+... .+.+||+.+......... ....... .++.. -++.+++.+|.+.. ..+.+++..+.
T Consensus 69 ~g~~latg~~dg------~i~iwd~~~~~~~~~~~~-~~~~~~v-~~v~~s~d~~~l~~~~~~~~----~~~~v~~~~~~ 136 (311)
T d1nr0a1 69 SGYYCASGDVHG------NVRIWDTTQTTHILKTTI-PVFSGPV-KDISWDSESKRIAAVGEGRE----RFGHVFLFDTG 136 (311)
T ss_dssp TSSEEEEEETTS------EEEEEESSSTTCCEEEEE-ECSSSCE-EEEEECTTSCEEEEEECCSS----CSEEEEETTTC
T ss_pred CCCEEECCCCCC------EEEEEEEECCCCCCCCCC-CCCCCCC-CCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCC
T ss_conf 999672255673------674663101111000013-4335754-33233311100011112211----11111111111
Q ss_pred CEEECCCCCCCCCCCC-EEEEEEE-CCCEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEE--CC
Q ss_conf 3898225899999760-0199998-994899990889998889099999699929994216999999964089998--99
Q 005493 235 TWLPLHCTGTGPSPRS-NHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GT 310 (694)
Q Consensus 235 ~W~~l~~~g~~P~~r~-~~s~~~~-~~~~lyi~GG~~~~~~~~~i~~yd~~t~~W~~l~~~g~~p~~R~~~sa~~~--~~ 310 (694)
+... .+..... -.++... ++.++++.|+.++ .+.+||..+......... .......+.+ ++
T Consensus 137 ~~~~-----~l~~h~~~v~~v~~~~~~~~~l~sgs~d~-----~i~i~d~~~~~~~~~~~~-----~~~~i~~v~~~p~~ 201 (311)
T d1nr0a1 137 TSNG-----NLTGQARAMNSVDFKPSRPFRIISGSDDN-----TVAIFEGPPFKFKSTFGE-----HTKFVHSVRYNPDG 201 (311)
T ss_dssp CBCB-----CCCCCSSCEEEEEECSSSSCEEEEEETTS-----CEEEEETTTBEEEEEECC-----CSSCEEEEEECTTS
T ss_pred CCCC-----CCCCCCCCCCCCCCCCCCEEEECCCCCCC-----CCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCC
T ss_conf 1111-----11111111111111211101200011221-----111111111111111111-----11111112347642
Q ss_pred EEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCC-CCCCEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCC
Q ss_conf 9999927789987681999998999189922189999888-867199999556982999994899999992899977468
Q 005493 311 KWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTS-NKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKN 389 (694)
Q Consensus 311 ~iyIiGG~~~~~~~~~i~~yd~~t~~W~~l~~~~~~~p~~-r~~~s~v~~~~~~~~~I~v~GG~~~~~~~~i~~~d~~~~ 389 (694)
.+++.|+.++. +.+||..+..-...-......... ......+.+. ++. .+++.||.++ .+.+||+.+.
T Consensus 202 ~~l~~~~~d~~-----v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s-~~~-~~l~tgs~Dg----~v~iwd~~t~ 270 (311)
T d1nr0a1 202 SLFASTGGDGT-----IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS-PDG-TKIASASADK----TIKIWNVATL 270 (311)
T ss_dssp SEEEEEETTSC-----EEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC-TTS-SEEEEEETTS----EEEEEETTTT
T ss_pred CCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC-CEEEEEECCC----EEEEEECCCC
T ss_conf 21211111111-----10001244641122211111110024653210247-889-9999993799----6999999999
Q ss_pred C
Q ss_conf 7
Q 005493 390 E 390 (694)
Q Consensus 390 ~ 390 (694)
+
T Consensus 271 ~ 271 (311)
T d1nr0a1 271 K 271 (311)
T ss_dssp E
T ss_pred C
T ss_conf 6
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.92 E-value=0.26 Score=23.06 Aligned_cols=243 Identities=11% Similarity=0.017 Sum_probs=105.6
Q ss_pred CCEEEEECCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEE-EECCEEEEECCCCCCCCCCCEEE
Q ss_conf 99999995878997767389998799948993246556999999999975314999-98999999942069999951799
Q 005493 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLI-SWGKKVLLVGGKTDSGSDRVSVW 176 (694)
Q Consensus 98 ~~~lyi~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~p~r~~~s~v-~~~~~Iyv~GG~~~~~~~~~~v~ 176 (694)
++.++++|+.+ ..+.+||..++.+....... ....+ -.++. ..++..++.||.+ ..+.
T Consensus 18 dg~~la~~~~~-----~~i~iw~~~~~~~~~~~~l~--------gH~~~--V~~l~fsp~~~~l~s~s~D------~~i~ 76 (371)
T d1k8kc_ 18 DRTQIAICPNN-----HEVHIYEKSGNKWVQVHELK--------EHNGQ--VTGVDWAPDSNRIVTCGTD------RNAY 76 (371)
T ss_dssp TSSEEEEECSS-----SEEEEEEEETTEEEEEEEEE--------CCSSC--EEEEEEETTTTEEEEEETT------SCEE
T ss_pred CCCEEEEEECC-----CEEEEEECCCCCEEEEEEEC--------CCCCC--EEEEEECCCCCEEEEEECC------CEEE
T ss_conf 99999999488-----98999988899789999955--------88998--8899997999999999799------9399
Q ss_pred EEECCCCCEEEEEECCCCCCCCEEEEEEEE--CCEEEEECCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCE-EE
Q ss_conf 999999939994214999976500299998--994999824359996446268841789838982258999997600-19
Q 005493 177 TFDTETECWSVVEAKGDIPVARSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSN-HV 253 (694)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~p~~R~~~s~~~~--~~~iyv~GG~~~~~~~~~~i~~yd~~t~~W~~l~~~g~~P~~r~~-~s 253 (694)
++|+.++.|..... ..........+.+ ++..++.|+.++. -.+|.++.....+..... ....+.. .+
T Consensus 77 vWd~~~~~~~~~~~---~~~~~~~v~~i~~~p~~~~l~~~s~d~~----i~i~~~~~~~~~~~~~~~---~~~~~~~v~~ 146 (371)
T d1k8kc_ 77 VWTLKGRTWKPTLV---ILRINRAARCVRWAPNEKKFAVGSGSRV----ISICYFEQENDWWVCKHI---KKPIRSTVLS 146 (371)
T ss_dssp EEEEETTEEEEEEE---CCCCSSCEEEEEECTTSSEEEEEETTSS----EEEEEEETTTTEEEEEEE---CTTCCSCEEE
T ss_pred EEEECCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCEEECCCCC----CEEEEEECCCCCCCCCCC---CCCCCCCCCC
T ss_conf 98620332110012---2322110001111111211000002576----302544203343311100---1011122211
Q ss_pred EEEECCCEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCC----CC---------CCCCC-CEEEEEE-CCEEEEECCC
Q ss_conf 99989948999908899988890999996999299942169----99---------99996-4089998-9999999277
Q 005493 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRG----FH---------PSPRA-GCCGVLC-GTKWYIAGGG 318 (694)
Q Consensus 254 ~~~~~~~~lyi~GG~~~~~~~~~i~~yd~~t~~W~~l~~~g----~~---------p~~R~-~~sa~~~-~~~iyIiGG~ 318 (694)
+....+..+++.|+.++. +..|+............. .. ..... -++++.. ++..++.|+.
T Consensus 147 v~~~p~~~~l~s~s~D~~-----v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 221 (371)
T d1k8kc_ 147 LDWHPNSVLLAAGSCDFK-----CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH 221 (371)
T ss_dssp EEECTTSSEEEEEETTSC-----EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET
T ss_pred CCCCCCCCCEECCCCCCE-----EEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 111111111000134767-----999840157643100122111111110112440476674789875123321000014
Q ss_pred CCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCCCC
Q ss_conf 89987681999998999189922189999888867199999556982999994899999992899977468767
Q 005493 319 SRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNESS 392 (694)
Q Consensus 319 ~~~~~~~~i~~yd~~t~~W~~l~~~~~~~p~~r~~~s~v~~~~~~~~~I~v~GG~~~~~~~~i~~~d~~~~~w~ 392 (694)
++ .+.++|+.+..-.... ... ......+.+.. ++.+++ +|.++. ..++.++.....+.
T Consensus 222 d~-----~i~iwd~~~~~~~~~~--~~~----~~~v~s~~fs~--d~~~la-~g~d~~--~~~~~~~~~~~~~~ 279 (371)
T d1k8kc_ 222 DS-----TVCLADADKKMAVATL--ASE----TLPLLAVTFIT--ESSLVA-AGHDCF--PVLFTYDSAAGKLS 279 (371)
T ss_dssp TT-----EEEEEEGGGTTEEEEE--ECS----SCCEEEEEEEE--TTEEEE-EETTSS--CEEEEEETTTTEEE
T ss_pred CC-----CCEEEEEECCCCEEEE--ECC----CCCCEEEEECC--CCCEEE-EECCCC--EEEEEEECCCCEEE
T ss_conf 78-----6058864101210000--014----66520365469--997999-981992--67877608986288
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.42 E-value=0.29 Score=22.71 Aligned_cols=12 Identities=8% Similarity=0.246 Sum_probs=5.7
Q ss_pred EEEEEECCCCCE
Q ss_conf 799999999939
Q 005493 174 SVWTFDTETECW 185 (694)
Q Consensus 174 ~v~~yD~~t~~W 185 (694)
.+..++..+.+-
T Consensus 164 ~i~~~~~~~~~~ 175 (337)
T d1gxra_ 164 NIAVWDLHNQTL 175 (337)
T ss_dssp CEEEEETTTTEE
T ss_pred CCCCCCCCCCCC
T ss_conf 111111111111
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=89.20 E-value=0.45 Score=21.48 Aligned_cols=223 Identities=13% Similarity=0.027 Sum_probs=110.2
Q ss_pred CCEEEEECCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCCCEEEE
Q ss_conf 99999995878997767389998799948993246556999999999975314999989999999420699999517999
Q 005493 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (694)
Q Consensus 98 ~~~lyi~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~ 177 (694)
++.||.+-- .-..++.||+.++.-+.... |..-+..+..-++.+++... +.+..
T Consensus 29 ~~~l~wvDi-----~~~~I~r~d~~~g~~~~~~~-------------~~~~~~i~~~~dg~l~va~~--------~gl~~ 82 (295)
T d2ghsa1 29 SGTAWWFNI-----LERELHELHLASGRKTVHAL-------------PFMGSALAKISDSKQLIASD--------DGLFL 82 (295)
T ss_dssp TTEEEEEEG-----GGTEEEEEETTTTEEEEEEC-------------SSCEEEEEEEETTEEEEEET--------TEEEE
T ss_pred CCEEEEEEC-----CCCEEEEEECCCCEEEEEEC-------------CCCCEEEEEECCCCEEEEEE--------CCCEE
T ss_conf 999999987-----89999999899895999989-------------99817989965998899973--------76389
Q ss_pred EECCCCCEEEEEECC-CCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCEEEEEE
Q ss_conf 999999399942149-9997650029999899499982435999644626884178983898225899999760019999
Q 005493 178 FDTETECWSVVEAKG-DIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAAL 256 (694)
Q Consensus 178 yD~~t~~W~~l~~~g-~~p~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~i~~yd~~t~~W~~l~~~g~~P~~r~~~s~~~ 256 (694)
||+.+++++.+.... ..+.-|.....+--++.+|+---.... .......|....++.+.+.. .+. .....+..
T Consensus 83 ~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~--~~~~g~l~~~~~g~~~~~~~--~~~--~~Ng~~~s 156 (295)
T d2ghsa1 83 RDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKA--ETGAGSIYHVAKGKVTKLFA--DIS--IPNSICFS 156 (295)
T ss_dssp EETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTC--CTTCEEEEEEETTEEEEEEE--EES--SEEEEEEC
T ss_pred EECCCCEEEEEEEEECCCCCCCCEEEEECCCCCEEEEECCCCC--CCCCEEEEEECCCCEEEEEE--CCC--CCCEEEEC
T ss_conf 5046451357866404787661013579799999887426431--33330576622996899865--068--76402465
Q ss_pred ECCCEEEEECCCCCCCCCCEEEEEECCCC-------CEEEEECCCCCCCCCCCE-EEEEE-CCEEEEECCCCCCCCCCEE
Q ss_conf 89948999908899988890999996999-------299942169999999640-89998-9999999277899876819
Q 005493 257 YDDKNLLIFGGSSKSKTLNDLYSLDFETM-------IWTRIKIRGFHPSPRAGC-CGVLC-GTKWYIAGGGSRKKRHAET 327 (694)
Q Consensus 257 ~~~~~lyi~GG~~~~~~~~~i~~yd~~t~-------~W~~l~~~g~~p~~R~~~-sa~~~-~~~iyIiGG~~~~~~~~~i 327 (694)
.+++.+|+..-. .+.+++|++... ....+.. +...... ++++. ++.||+..-.. ..+
T Consensus 157 ~d~~~l~~~dt~-----~~~I~~~~~d~~~~~~~~~~~~~~~~----~~~~g~pdG~~vD~~GnlWva~~~~-----g~V 222 (295)
T d2ghsa1 157 PDGTTGYFVDTK-----VNRLMRVPLDARTGLPTGKAEVFIDS----TGIKGGMDGSVCDAEGHIWNARWGE-----GAV 222 (295)
T ss_dssp TTSCEEEEEETT-----TCEEEEEEBCTTTCCBSSCCEEEEEC----TTSSSEEEEEEECTTSCEEEEEETT-----TEE
T ss_pred CCCCEEEEEECC-----CCEEEEEEECCCCCCCCCCEEEEECC----CCCCCCCCCEEECCCCCEEEEEECC-----CCE
T ss_conf 877668985156-----63246764535555324535788416----7555666326786999989532078-----846
Q ss_pred EEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCC
Q ss_conf 9999899918992218999988886719999955698299999489
Q 005493 328 LIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 373 (694)
Q Consensus 328 ~~yd~~t~~W~~l~~~~~~~p~~r~~~s~v~~~~~~~~~I~v~GG~ 373 (694)
.+||++......+.. | .. ..+++++..++.+.|||.-..
T Consensus 223 ~~~dp~G~~~~~i~l-P----~~--~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 223 DRYDTDGNHIARYEV-P----GK--QTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp EEECTTCCEEEEEEC-S----CS--BEEEEEEESTTSCEEEEEEBC
T ss_pred EEECCCCCEEEEECC-C----CC--CEEEEEEECCCCCEEEEEECC
T ss_conf 885699928668638-9----98--527989828999999999787
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=88.75 E-value=0.48 Score=21.27 Aligned_cols=254 Identities=13% Similarity=0.076 Sum_probs=119.1
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEEE--CCEEEEECCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCC
Q ss_conf 754457888899965993006999987530299999--999999958789977673899987999489932465569999
Q 005493 62 GPEVSNGTSGNSENWMVLSIAGDKPIPRFNHAAAVI--GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSS 139 (694)
Q Consensus 62 ~~d~~~~~~~~s~~W~~l~~~~~~P~~R~~~s~~~v--~~~lyi~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~ 139 (694)
++|. .+++....- +.+..-+++++- +.+||+.++.. +.+.+||+.++.-...-+
T Consensus 16 v~D~------~t~~~~~~i-----~~g~~p~~va~spdG~~l~v~~~~~-----~~i~v~d~~t~~~~~~~~-------- 71 (301)
T d1l0qa2 16 VIDV------TSNKVTATI-----PVGSNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIATVP-------- 71 (301)
T ss_dssp EEET------TTTEEEEEE-----ECSSSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEEEE--------
T ss_pred EEEC------CCCEEEEEE-----ECCCCCEEEEEECCCCEEEEEECCC-----CEEEEEECCCCCEEEEEE--------
T ss_conf 9999------999599999-----8899836999928989999997899-----989999999894103200--------
Q ss_pred CCCCCCCCCCEEEEEE-C-CEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEEEE-CCEEEEECCC
Q ss_conf 9999997531499998-9-99999942069999951799999999939994214999976500299998-9949998243
Q 005493 140 LPLKIPACRGHSLISW-G-KKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRA-SSVLILFGGE 216 (694)
Q Consensus 140 ~~~~~p~r~~~s~v~~-~-~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~p~~R~~~s~~~~-~~~iyv~GG~ 216 (694)
... .-+.+... + ..+++.+.. ...+..++..+++...... .. ......... ++..+++.+.
T Consensus 72 ----~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~dg~~~~~~~~ 135 (301)
T d1l0qa2 72 ----AGS-SPQGVAVSPDGKQVYVTNMA------SSTLSVIDTTSNTVAGTVK---TG--KSPLGLALSPDGKKLYVTNN 135 (301)
T ss_dssp ----CSS-SEEEEEECTTSSEEEEEETT------TTEEEEEETTTTEEEEEEE---CS--SSEEEEEECTTSSEEEEEET
T ss_pred ----CCC-CCCCCCCCCCCCCCCCCCCC------CCEEEECCCCCCEEEEECC---CC--CCCEEEEEECCCCEEEEEEC
T ss_conf ----024-64311000111111111111------1001100124302432024---44--44237876058971554201
Q ss_pred CCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCEEEEEEE-CCCEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCC
Q ss_conf 59996446268841789838982258999997600199998-99489999088999888909999969992999421699
Q 005493 217 DGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAALY-DDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGF 295 (694)
Q Consensus 217 ~~~~~~~~~i~~yd~~t~~W~~l~~~g~~P~~r~~~s~~~~-~~~~lyi~GG~~~~~~~~~i~~yd~~t~~W~~l~~~g~ 295 (694)
. ...+..++..+........ .... -..+... ++..+|+.+... ..+..++............
T Consensus 136 ~-----~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-- 198 (301)
T d1l0qa2 136 G-----DKTVSVINTVTKAVINTVS--VGRS---PKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVIDTVKV-- 198 (301)
T ss_dssp T-----TTEEEEEETTTTEEEEEEE--CCSS---EEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEEC--
T ss_pred C-----CCCEEEEECCCCCEEEECC--CCCC---CEEEEEECCCCCEEEECCCC-----CCCCCCCCCCEEEEECCCC--
T ss_conf 1-----1100110001463035315--6788---42888604654013101211-----1111111110001110133--
Q ss_pred CCCCCCCEEEEEE--CCEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCC
Q ss_conf 9999964089998--99999992778998768199999899918992218999988886719999955698299999489
Q 005493 296 HPSPRAGCCGVLC--GTKWYIAGGGSRKKRHAETLIFDILKGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGI 373 (694)
Q Consensus 296 ~p~~R~~~sa~~~--~~~iyIiGG~~~~~~~~~i~~yd~~t~~W~~l~~~~~~~p~~r~~~s~v~~~~~~~~~I~v~GG~ 373 (694)
+. .-...+.. +..+|+.+.... .+.++++|+.+..-..... .. .....+.+. +++.+||+.++.
T Consensus 199 -~~--~~~~~~~~~~g~~~~v~~~~~~---~~~v~v~D~~t~~~~~~~~-~~------~~~~~va~s-pdg~~l~va~~~ 264 (301)
T d1l0qa2 199 -EA--APSGIAVNPEGTKAYVTNVDKY---FNTVSMIDTGTNKITARIP-VG------PDPAGIAVT-PDGKKVYVALSF 264 (301)
T ss_dssp -SS--EEEEEEECTTSSEEEEEEECSS---CCEEEEEETTTTEEEEEEE-CC------SSEEEEEEC-TTSSEEEEEETT
T ss_pred -CC--CCCEEECCCCCCCCCCCCCCCE---EEEEEEEECCCCEEEEEEC-CC------CCEEEEEEE-CCCCEEEEEECC
T ss_conf -57--7503110111101111002100---0023236569981999984-89------987799991-898999999899
Q ss_pred CCCCCCCEEEEECCCCC
Q ss_conf 99999928999774687
Q 005493 374 KKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 374 ~~~~~~~i~~~d~~~~~ 390 (694)
++ .|.++|+.+.+
T Consensus 265 ~~----~i~v~D~~t~~ 277 (301)
T d1l0qa2 265 CN----TVSVIDTATNT 277 (301)
T ss_dssp TT----EEEEEETTTTE
T ss_pred CC----EEEEEECCCCE
T ss_conf 99----69999999995
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=87.93 E-value=0.54 Score=20.93 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=51.1
Q ss_pred CCEEEEECCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCCCEEEE
Q ss_conf 99999995878997767389998799948993246556999999999975314999989999999420699999517999
Q 005493 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISWGKKVLLVGGKTDSGSDRVSVWT 177 (694)
Q Consensus 98 ~~~lyi~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~p~r~~~s~v~~~~~Iyv~GG~~~~~~~~~~v~~ 177 (694)
+++.++++|.... ..++++|..++....+.. ........+..-+++.+++++.. ..++.
T Consensus 53 Dg~~l~~~~~~~g---~~v~v~d~~~~~~~~~~~------------~~~~v~~~~~spdg~~l~~~~~~------~~~~~ 111 (360)
T d1k32a3 53 DTKVAFIHGTREG---DFLGIYDYRTGKAEKFEE------------NLGNVFAMGVDRNGKFAVVANDR------FEIMT 111 (360)
T ss_dssp SSEEEEEEEETTE---EEEEEEETTTCCEEECCC------------CCCSEEEEEECTTSSEEEEEETT------SEEEE
T ss_pred CCCEEEEEECCCC---CEEEEEECCCCCEEEEEC------------CCCEEEEEEECCCCCCCCEECCC------CCCCC
T ss_conf 9999999992899---899999899994887508------------97127741211454321000111------11000
Q ss_pred EECCCCCEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCC----CCCCCCEEEEECCCCCEEEC
Q ss_conf 999999399942149999765002999989949998243599----96446268841789838982
Q 005493 178 FDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGK----RRKLNDLHMFDLKSLTWLPL 239 (694)
Q Consensus 178 yD~~t~~W~~l~~~g~~p~~R~~~s~~~~~~~iyv~GG~~~~----~~~~~~i~~yd~~t~~W~~l 239 (694)
++..+........ .........+..-+++.+++.+.... ......+++++..+..-..+
T Consensus 112 ~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~ 174 (360)
T d1k32a3 112 VDLETGKPTVIER---SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 174 (360)
T ss_dssp EETTTCCEEEEEE---CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred CCCCCCCEEEEEE---CCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCCEEEECCCCCCEEEE
T ss_conf 0012221000000---13552023012132256652123312110002565426630455713530
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.92 E-value=0.62 Score=20.55 Aligned_cols=174 Identities=15% Similarity=0.146 Sum_probs=88.7
Q ss_pred EEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCEEE
Q ss_conf 79999999993999421499997650029999899499982435999644626884178983898225899999760019
Q 005493 174 SVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHV 253 (694)
Q Consensus 174 ~v~~yD~~t~~W~~l~~~g~~p~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~i~~yd~~t~~W~~l~~~g~~P~~r~~~s 253 (694)
.+..++..+........ .. .............++.|+.+ ..+.++|+....-.... . .......
T Consensus 118 ~i~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~d------~~i~~~d~~~~~~~~~~---~--~~~~~~~ 181 (342)
T d2ovrb2 118 TLRVWDIETGQCLHVLM---GH--VAAVRCVQYDGRRVVSGAYD------FMVKVWDPETETCLHTL---Q--GHTNRVY 181 (342)
T ss_dssp EEEEEESSSCCEEEEEE---CC--SSCEEEEEECSSCEEEEETT------SCEEEEEGGGTEEEEEE---C--CCSSCEE
T ss_pred EEEEEECCCCCCEEEEE---CC--CCCCEEECCCCCEEEEECCC------CEEEEEECCCCEEEEEE---C--CCCCCCC
T ss_conf 37874035563001110---01--11100000133302433589------86999525234366787---2--7544421
Q ss_pred EEEECCCEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCCEEEEEECC
Q ss_conf 99989948999908899988890999996999299942169999999640899989999999277899876819999989
Q 005493 254 AALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLCGTKWYIAGGGSRKKRHAETLIFDIL 333 (694)
Q Consensus 254 ~~~~~~~~lyi~GG~~~~~~~~~i~~yd~~t~~W~~l~~~g~~p~~R~~~sa~~~~~~iyIiGG~~~~~~~~~i~~yd~~ 333 (694)
....++. .++.|+.++ .+..||+....-...... ......++..++.+++.|+.++. +.+||+.
T Consensus 182 ~~~~~~~-~l~s~~~dg-----~i~~~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~l~s~s~d~~-----i~iwd~~ 245 (342)
T d2ovrb2 182 SLQFDGI-HVVSGSLDT-----SIRVWDVETGNCIHTLTG-----HQSLTSGMELKDNILVSGNADST-----VKIWDIK 245 (342)
T ss_dssp EEEECSS-EEEEEETTS-----CEEEEETTTCCEEEEECC-----CCSCEEEEEEETTEEEEEETTSC-----EEEEETT
T ss_pred CCCCCCC-EEEEEECCC-----EEEEEECCCCEEEEEECC-----CCCCEEEEECCCCEEEEECCCCE-----EEEEECC
T ss_conf 0068999-999995899-----399952556536567416-----65320577068999999748988-----9998655
Q ss_pred CCCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCEEEEECCCCC
Q ss_conf 991899221899998888671999995569829999948999999928999774687
Q 005493 334 KGEWSVAITSPSSSVTSNKGFTLVLVQHKEKDFLVAFGGIKKEPSNQVEVLSIEKNE 390 (694)
Q Consensus 334 t~~W~~l~~~~~~~p~~r~~~s~v~~~~~~~~~I~v~GG~~~~~~~~i~~~d~~~~~ 390 (694)
............. ........... ..+++.|+.++ .+.++++.+.+
T Consensus 246 ~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~s~s~Dg----~i~iwd~~tg~ 291 (342)
T d2ovrb2 246 TGQCLQTLQGPNK---HQSAVTCLQFN----KNFVITSSDDG----TVKLWDLKTGE 291 (342)
T ss_dssp TCCEEEEECSTTS---CSSCEEEEEEC----SSEEEEEETTS----EEEEEETTTCC
T ss_pred CCCCCCCCCCCCE---EEECEEECCCC----CCEEEEECCCC----EEEEEECCCCC
T ss_conf 4422111221000---11010000137----98449990899----89999999997
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=86.46 E-value=0.65 Score=20.39 Aligned_cols=208 Identities=11% Similarity=0.017 Sum_probs=105.7
Q ss_pred CCEEEEECCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEE-ECCEEEEECCCCCCCCCCCEEE
Q ss_conf 999999958789977673899987999489932465569999999999753149999-8999999942069999951799
Q 005493 98 GNKMIVVGGESGNGLLDDVQVLNFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLIS-WGKKVLLVGGKTDSGSDRVSVW 176 (694)
Q Consensus 98 ~~~lyi~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~~~~~~~~p~r~~~s~v~-~~~~Iyv~GG~~~~~~~~~~v~ 176 (694)
++.||+..- ....++.+++.+......... ... .-+.++. -++.+|+..-.. ......+.
T Consensus 50 ~G~Ly~~D~-----~~g~I~ri~p~g~~~~~~~~~-----------~~~-~p~gla~~~dG~l~va~~~~--~~~~~~i~ 110 (319)
T d2dg1a1 50 QGQLFLLDV-----FEGNIFKINPETKEIKRPFVS-----------HKA-NPAAIKIHKDGRLFVCYLGD--FKSTGGIF 110 (319)
T ss_dssp TSCEEEEET-----TTCEEEEECTTTCCEEEEEEC-----------SSS-SEEEEEECTTSCEEEEECTT--SSSCCEEE
T ss_pred CCCEEEEEC-----CCCEEEEEECCCCEEEEEEEC-----------CCC-CEEEEEECCCCCEEEEECCC--CCCCEEEE
T ss_conf 999999977-----999999998999959999948-----------998-70389999999999995689--73110499
Q ss_pred EEECCCCCEEEEEECCCCCCCCEEEEEE-EECCEEEEECCCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCEEEEE
Q ss_conf 9999999399942149999765002999-989949998243599964462688417898389822589999976001999
Q 005493 177 TFDTETECWSVVEAKGDIPVARSGHTVV-RASSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPLHCTGTGPSPRSNHVAA 255 (694)
Q Consensus 177 ~yD~~t~~W~~l~~~g~~p~~R~~~s~~-~~~~~iyv~GG~~~~~~~~~~i~~yd~~t~~W~~l~~~g~~P~~r~~~s~~ 255 (694)
.++..+........ ..........++ .-++.+|+-.-..........++++++....+..+.. .+..| ..++
T Consensus 111 ~~~~~~~~~~~~~~--~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~--~~~~p---nGia 183 (319)
T d2dg1a1 111 AATENGDNLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NISVA---NGIA 183 (319)
T ss_dssp EECTTSCSCEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EESSE---EEEE
T ss_pred EECCCCCEEEEECC--CCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCEEEEEECCCCEEEEEEE--CCCEE---EEEE
T ss_conf 87389963644426--77755587522677306532001354002574215788416633578861--23301---0001
Q ss_pred EE-CCCEEEEECCCCCCCCCCEEEEEECCCCC---EEEEECCCCCCCCCCCE-EEEEE-CCEEEEECCCCCCCCCCEEEE
Q ss_conf 98-99489999088999888909999969992---99942169999999640-89998-999999927789987681999
Q 005493 256 LY-DDKNLLIFGGSSKSKTLNDLYSLDFETMI---WTRIKIRGFHPSPRAGC-CGVLC-GTKWYIAGGGSRKKRHAETLI 329 (694)
Q Consensus 256 ~~-~~~~lyi~GG~~~~~~~~~i~~yd~~t~~---W~~l~~~g~~p~~R~~~-sa~~~-~~~iyIiGG~~~~~~~~~i~~ 329 (694)
.- +++.+|+.--. .+.|++|++.... +..............+. .+++. ++.|||..-.. ..+.+
T Consensus 184 ~s~dg~~lyvad~~-----~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~-----g~V~~ 253 (319)
T d2dg1a1 184 LSTDEKVLWVTETT-----ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ-----GRVLV 253 (319)
T ss_dssp ECTTSSEEEEEEGG-----GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT-----TEEEE
T ss_pred ECCCCCEEEEECCC-----CCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCC-----CEEEE
T ss_conf 01222127874046-----891479997699836202463333125776410364173899999998489-----98999
Q ss_pred EECCCCCEEEEE
Q ss_conf 998999189922
Q 005493 330 FDILKGEWSVAI 341 (694)
Q Consensus 330 yd~~t~~W~~l~ 341 (694)
||++-.....+.
T Consensus 254 ~~p~G~~l~~i~ 265 (319)
T d2dg1a1 254 FNKRGYPIGQIL 265 (319)
T ss_dssp ECTTSCEEEEEE
T ss_pred ECCCCCEEEEEE
T ss_conf 979995988996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.43 E-value=0.65 Score=20.38 Aligned_cols=243 Identities=14% Similarity=0.108 Sum_probs=102.0
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC-CEEEEEE-CCEEEEECCCCCCCCCCCEEEE
Q ss_conf 9599833899997764455675445788889996599300699998753-0299999-9999999587899776738999
Q 005493 42 ECVAPSSNHADDRDCECTIAGPEVSNGTSGNSENWMVLSIAGDKPIPRF-NHAAAVI-GNKMIVVGGESGNGLLDDVQVL 119 (694)
Q Consensus 42 ~~i~i~GG~~~~~~~~~~~~~~d~~~~~~~~s~~W~~l~~~~~~P~~R~-~~s~~~v-~~~lyi~GG~~~~~~~~~v~~y 119 (694)
...+.+|+.... ..+|+. .++++..+.. +..... =.+++.- ++++++.||.+ ..+.++
T Consensus 19 g~~la~~~~~~~------i~iw~~------~~~~~~~~~~---l~gH~~~V~~l~fsp~~~~l~s~s~D-----~~i~vW 78 (371)
T d1k8kc_ 19 RTQIAICPNNHE------VHIYEK------SGNKWVQVHE---LKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVW 78 (371)
T ss_dssp SSEEEEECSSSE------EEEEEE------ETTEEEEEEE---EECCSSCEEEEEEETTTTEEEEEETT-----SCEEEE
T ss_pred CCEEEEEECCCE------EEEEEC------CCCCEEEEEE---ECCCCCCEEEEEECCCCCEEEEEECC-----CEEEEE
T ss_conf 999999948898------999988------8997899999---55889988899997999999999799-----939998
Q ss_pred ECCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEE--CCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 879994899324655699999999997531499998--999999942069999951799999999939994214999976
Q 005493 120 NFDRFSWTAASSKLYLSPSSLPLKIPACRGHSLISW--GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVA 197 (694)
Q Consensus 120 d~~t~~W~~~~~~~~~~~~~~~~~~p~r~~~s~v~~--~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~p~~ 197 (694)
|+.++.|...... .... .....+.+ ++..++.|+.. ..-.+|.++.....|..... ....
T Consensus 79 d~~~~~~~~~~~~----------~~~~-~~v~~i~~~p~~~~l~~~s~d----~~i~i~~~~~~~~~~~~~~~---~~~~ 140 (371)
T d1k8kc_ 79 TLKGRTWKPTLVI----------LRIN-RAARCVRWAPNEKKFAVGSGS----RVISICYFEQENDWWVCKHI---KKPI 140 (371)
T ss_dssp EEETTEEEEEEEC----------CCCS-SCEEEEEECTTSSEEEEEETT----SSEEEEEEETTTTEEEEEEE---CTTC
T ss_pred EECCCCCCCCCCC----------CCCC-CCCCCCCCCCCCCCCEEECCC----CCCEEEEEECCCCCCCCCCC---CCCC
T ss_conf 6203321100122----------3221-100011111112110000025----76302544203343311100---1011
Q ss_pred CEEEEEEEE--CCEEEEECCCCCCCCCCCCEEEEECCCCCEEEC---------CCCCC-----CCCCCCEEEEEEECCCE
Q ss_conf 500299998--994999824359996446268841789838982---------25899-----99976001999989948
Q 005493 198 RSGHTVVRA--SSVLILFGGEDGKRRKLNDLHMFDLKSLTWLPL---------HCTGT-----GPSPRSNHVAALYDDKN 261 (694)
Q Consensus 198 R~~~s~~~~--~~~iyv~GG~~~~~~~~~~i~~yd~~t~~W~~l---------~~~g~-----~P~~r~~~s~~~~~~~~ 261 (694)
+..-..+.. ++.+++.|+.++. +.+|+......... ...+. ......-++++...+..
T Consensus 141 ~~~v~~v~~~p~~~~l~s~s~D~~------v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 214 (371)
T d1k8kc_ 141 RSTVLSLDWHPNSVLLAAGSCDFK------CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS 214 (371)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSC------EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS
T ss_pred CCCCCCCCCCCCCCCEECCCCCCE------EEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCC
T ss_conf 122211111111111000134767------99984015764310012211111111011244047667478987512332
Q ss_pred EEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEE-ECCEEEEECCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 9999088999888909999969992999421699999996408999-899999992778998768199999899918992
Q 005493 262 LLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVL-CGTKWYIAGGGSRKKRHAETLIFDILKGEWSVA 340 (694)
Q Consensus 262 lyi~GG~~~~~~~~~i~~yd~~t~~W~~l~~~g~~p~~R~~~sa~~-~~~~iyIiGG~~~~~~~~~i~~yd~~t~~W~~l 340 (694)
.++.|+.++ .+..||.....-...-.. ......+++. -++.+++ +|.+.. ..+|.++.....|...
T Consensus 215 ~l~s~~~d~-----~i~iwd~~~~~~~~~~~~----~~~~v~s~~fs~d~~~la-~g~d~~---~~~~~~~~~~~~~~~~ 281 (371)
T d1k8kc_ 215 RVAWVSHDS-----TVCLADADKKMAVATLAS----ETLPLLAVTFITESSLVA-AGHDCF---PVLFTYDSAAGKLSFG 281 (371)
T ss_dssp EEEEEETTT-----EEEEEEGGGTTEEEEEEC----SSCCEEEEEEEETTEEEE-EETTSS---CEEEEEETTTTEEEEC
T ss_pred CCCCCCCCC-----CCEEEEEECCCCEEEEEC----CCCCCEEEEECCCCCEEE-EECCCC---EEEEEEECCCCEEEEE
T ss_conf 100001478-----605886410121000001----466520365469997999-981992---6787760898628872
Q ss_pred E
Q ss_conf 2
Q 005493 341 I 341 (694)
Q Consensus 341 ~ 341 (694)
.
T Consensus 282 ~ 282 (371)
T d1k8kc_ 282 G 282 (371)
T ss_dssp C
T ss_pred E
T ss_conf 0
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=83.68 E-value=0.87 Score=19.55 Aligned_cols=147 Identities=10% Similarity=-0.032 Sum_probs=61.9
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCEEEEECCCCCCCCCCCCEEEEECCCCC
Q ss_conf 99999994206999995179999999993999421499997650029999899499982435999644626884178983
Q 005493 156 GKKVLLVGGKTDSGSDRVSVWTFDTETECWSVVEAKGDIPVARSGHTVVRASSVLILFGGEDGKRRKLNDLHMFDLKSLT 235 (694)
Q Consensus 156 ~~~Iyv~GG~~~~~~~~~~v~~yD~~t~~W~~l~~~g~~p~~R~~~s~~~~~~~iyv~GG~~~~~~~~~~i~~yd~~t~~ 235 (694)
++.||.+--. ...++++|+++++-+... +|.. ....+..-++.+++.. .+.++.||+.+.+
T Consensus 29 ~~~l~wvDi~------~~~I~r~d~~~g~~~~~~----~~~~-~~~i~~~~dg~l~va~--------~~gl~~~d~~tg~ 89 (295)
T d2ghsa1 29 SGTAWWFNIL------ERELHELHLASGRKTVHA----LPFM-GSALAKISDSKQLIAS--------DDGLFLRDTATGV 89 (295)
T ss_dssp TTEEEEEEGG------GTEEEEEETTTTEEEEEE----CSSC-EEEEEEEETTEEEEEE--------TTEEEEEETTTCC
T ss_pred CCEEEEEECC------CCEEEEEECCCCEEEEEE----CCCC-CEEEEEECCCCEEEEE--------ECCCEEEECCCCE
T ss_conf 9999999878------999999989989599998----9998-1798996599889997--------3763895046451
Q ss_pred EEECCCC-CCCCCCCCEEEEEEECCCEEEEECCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEE--CCEE
Q ss_conf 8982258-999997600199998994899990889998889099999699929994216999999964089998--9999
Q 005493 236 WLPLHCT-GTGPSPRSNHVAALYDDKNLLIFGGSSKSKTLNDLYSLDFETMIWTRIKIRGFHPSPRAGCCGVLC--GTKW 312 (694)
Q Consensus 236 W~~l~~~-g~~P~~r~~~s~~~~~~~~lyi~GG~~~~~~~~~i~~yd~~t~~W~~l~~~g~~p~~R~~~sa~~~--~~~i 312 (694)
++.+... ...+.-|.....+--+++ +|+..- ........-..|.+..+..+.+... ..... ..+.. ++.+
T Consensus 90 ~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~-~~~~~~~~g~l~~~~~g~~~~~~~~----~~~~N-g~~~s~d~~~l 162 (295)
T d2ghsa1 90 LTLHAELESDLPGNRSNDGRMHPSGA-LWIGTM-GRKAETGAGSIYHVAKGKVTKLFAD----ISIPN-SICFSPDGTTG 162 (295)
T ss_dssp EEEEECSSTTCTTEEEEEEEECTTSC-EEEEEE-ETTCCTTCEEEEEEETTEEEEEEEE----ESSEE-EEEECTTSCEE
T ss_pred EEEEEEEECCCCCCCCEEEEECCCCC-EEEEEC-CCCCCCCCEEEEEECCCCEEEEEEC----CCCCC-EEEECCCCCEE
T ss_conf 35786640478766101357979999-988742-6431333305766229968998650----68764-02465877668
Q ss_pred EEECCCCCCCCCCEEEEEECC
Q ss_conf 999277899876819999989
Q 005493 313 YIAGGGSRKKRHAETLIFDIL 333 (694)
Q Consensus 313 yIiGG~~~~~~~~~i~~yd~~ 333 (694)
|+..-.. ..++.|+++
T Consensus 163 ~~~dt~~-----~~I~~~~~d 178 (295)
T d2ghsa1 163 YFVDTKV-----NRLMRVPLD 178 (295)
T ss_dssp EEEETTT-----CEEEEEEBC
T ss_pred EEEECCC-----CEEEEEEEC
T ss_conf 9851566-----324676453
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.88 E-value=1 Score=19.10 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=10.9
Q ss_pred CCEEEEECCCCCCCCCCEEEEEECCCCC
Q ss_conf 9999999277899876819999989991
Q 005493 309 GTKWYIAGGGSRKKRHAETLIFDILKGE 336 (694)
Q Consensus 309 ~~~iyIiGG~~~~~~~~~i~~yd~~t~~ 336 (694)
++.+++.|+.++. +.+||+.+..
T Consensus 281 ~~~~l~~g~~dg~-----i~iwd~~~~~ 303 (340)
T d1tbga_ 281 SGRLLLAGYDDFN-----CNVWDALKAD 303 (340)
T ss_dssp SSCEEEEEETTSC-----EEEEETTTCC
T ss_pred CCCEEEEEECCCE-----EEEEECCCCC
T ss_conf 9999999979798-----9999999993
|