Citrus Sinensis ID: 005497

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690---
MAGDEKDEMPMLSDSQSKSSDRNFDFRLQTFASRTRSASMSITMNSTDSFEPEANLVGLTGPLRNERRTQFLQMSGPLYSNRKPDHIFRRNQGVTGVNLVETKAEKFPSFSGMDQNDWPDDRYEAKNEHLLRSGQLGMCNDPYCTTCPTYYKATRSKHSKSSGIFDPKFHNALYGDAKGWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWRYRKKRLNRADTSHSLSNQSSS
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccEEEccccHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcEEccccccccccEEEccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccEEEEccccccEEEEEEEcEEEEEccccEEEEcccccEEcccHHHHHcccccccccccccccccccccccccEEEccEEEcccccHHcHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccc
ccccccccccccccccccccccccccccccccccccccEEEcccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHEcccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHcHHHEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccEEcccEEcccHHHHHHHHHHccHHHHHHHHccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEcccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHcccccccccEEEEEcccccEEEEEEEcEEEEEEcccEEEEEcccccccHHHHHHccccccccccccEEEcccccccccccEEEEEHHHHHHHcHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
magdekdempmlsdsqskssdrnfDFRLQTFASrtrsasmsitmnstdsfepeanlvgltgplrnerrtqflqmsgplysnrkpdhifrrnqgvtgvnLVETkaekfpsfsgmdqndwpddryeaknehllrsgqlgmcndpycttcptyykatrskhskssgifdpkfhnalygdAKGWARRFISSLQRyvpgimnphtrIVQQWKQFFVITCLVAIFVDPLFFFLLSVQqnnkcivinwpWTKAIVVVRSMTDLIYFLNILLQFRLayvapesrvvgagelvdhpkKIALNYLRGYFFIdffvalplpqrvnqclrdachnssiqdckkfldcghgnggaeysqdqtwkswsgnqqasdcfekdkfsygIYEQAVKLTTENSIITRYVYSLFWGFQQistlagnqtpsyfvgEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAatrgvnedmlftnLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQktyisgskilyrggLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEhssvnrdakryripgqrllcnrtvrclTNVEAFSLRAADIEEVTSLFARFLrsprvqgairyespywRCRAAIVIQVAWRYRKKrlnradtshslsnqsss
magdekdempmlsdsqskssdrnfdFRLQTFasrtrsasmsitmnstdsfepeaNLVGLTGPLRNERRTQFLQMsgplysnrkpdhiFRRNQGVTGVNLvetkaekfpsfsgmdqndWPDDRYEAKNEHLLRsgqlgmcndpYCTTCPTYYKATRskhskssgifdpKFHNALYGDAKGWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRdveqwmrhrrlpeqlrrqVREAERYNwaatrgvnedmlftNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKtyisgskilyrgglIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHssvnrdakryripgqrllcnrtVRCLTNVEAFSLRAADIEEVTSLFArflrsprvqgairyespywrcRAAIVIQVAWRYRKKRlnradtshslsnqsss
MAGDEKDEMPMLSDSQSKSSDRNFDFRLQTFASRTRSASMSITMNSTDSFEPEANLVGLTGPLRNERRTQFLQMSGPLYSNRKPDHIFRRNQGVTGVNLVETKAEKFPSFSGMDQNDWPDDRYEAKNEHLLRSGQLGMCNDPYCTTCPTYYKATRSKHSKSSGIFDPKFHNALYGDAKGWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWRYRKKRLNRADTSHSLSNQSSS
**************************************************************************************IFRRNQGVTGVNLVE***************************HLLRSGQLGMCNDPYCTTCPTYYKATR*******GIFDPKFHNALYGDAKGWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRL***LRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWRYRK******************
*****KD**PML*********************************************************************************************************************************PYC*******************************************LQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHS***********PGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWR*********************
********************DRNFDFRLQTFASRTRSASMSITMNSTDSFEPEANLVGLTGPLRNERRTQFLQMSGPLYSNRKPDHIFRRNQGVTGVNLVETKAEKFPSFSGMDQNDWPDDRYEAKNEHLLRSGQLGMCNDPYCTTCPTYYKA********SGIFDPKFHNALYGDAKGWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWRYRKKRLN**************
**************************************SMSITMNSTDSFEPEANLVGLTGPLRNERRT********************************************************************MCNDPYCTT*******************DPKFHNALYGDAKGWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWRYRKKRLNRA************
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MAGDEKDEMPMLSDSQSKSSDRNFDFRLQTFASRTRSASMSITMNSTDSFEPEANLVGLTGPLRNERRTQFLQMSGPLYSNRKPDHIFRRNQGVTGVNLVETKAEKFPSFSGMDQNDWPDDRYEAKNEHLLRSGQLGMCNDPYCTTCPTYYKATRSKHSKSSGIFDPKFHNALYGDAKGWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWRYRKKRLNRADTSHSLSNQSSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query693 2.2.26 [Sep-21-2011]
Q9LDR2729 Putative cyclic nucleotid yes no 0.538 0.511 0.639 1e-142
Q9LD37764 Probable cyclic nucleotid no no 0.512 0.464 0.703 1e-141
Q9FXH6753 Putative cyclic nucleotid no no 0.509 0.468 0.418 5e-73
Q9M0A4733 Putative cyclic nucleotid no no 0.668 0.631 0.351 4e-71
Q9S9N5738 Putative cyclic nucleotid no no 0.512 0.481 0.413 4e-71
O82226747 Probable cyclic nucleotid no no 0.666 0.618 0.354 3e-70
Q8L7Z0720 Probable cyclic nucleotid no no 0.503 0.484 0.408 1e-69
Q8RWS9717 Probable cyclic nucleotid no no 0.536 0.518 0.384 6e-67
Q9SL29678 Putative cyclic nucleotid no no 0.503 0.514 0.405 8e-67
Q9SJA4726 Probable cyclic nucleotid no no 0.525 0.501 0.387 1e-65
>sp|Q9LDR2|CNG19_ARATH Putative cyclic nucleotide-gated ion channel 19 OS=Arabidopsis thaliana GN=CNGC19 PE=3 SV=1 Back     alignment and function desciption
 Score =  505 bits (1301), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 243/380 (63%), Positives = 304/380 (80%), Gaps = 7/380 (1%)

Query: 311 QRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSY 370
           QRV +C+ +A  N S  + +  +DC  G+  ++  +D     W  N   + CF+++ ++Y
Sbjct: 357 QRVKKCMLNAW-NISADERRNLIDCARGSYASKSQRDL----WRDNASVNACFQENGYTY 411

Query: 371 GIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLF 430
           GIY +AV LT E+S  TR+ YSL+WGFQQISTLAGN +PSY VGEV FTM IIG+GLLLF
Sbjct: 412 GIYLKAVNLTNESSFFTRFSYSLYWGFQQISTLAGNLSPSYSVGEVFFTMGIIGLGLLLF 471

Query: 431 AFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVN 490
           A LIGNM NFLQ+L +RR++M LR+RDVEQWM HRRLPE +R++VRE ERY WAATRGVN
Sbjct: 472 ARLIGNMHNFLQSLDRRRMEMMLRKRDVEQWMSHRRLPEDIRKRVREVERYTWAATRGVN 531

Query: 491 EDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRG 550
           E++LF N+P+DLQR+IRRHLFKF+KKVRIF+LMDE +LD+I ERL+Q+TYI  S +L+  
Sbjct: 532 EELLFENMPDDLQRDIRRHLFKFLKKVRIFSLMDESVLDSIRERLKQRTYIRSSTVLHHR 591

Query: 551 GLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRL 610
           GL+EKMVFIVRG+MESIGEDG  + LSEGD CGEELLTWCL  SS+N D  R ++P + L
Sbjct: 592 GLVEKMVFIVRGEMESIGEDGSVLPLSEGDVCGEELLTWCL--SSINPDGTRIKMPPKGL 649

Query: 611 LCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVA 670
           + NR VRC+TNVEAFSL  AD+E+VTSLF+RFLRS RVQGAIRYESPYWR RAA+ IQVA
Sbjct: 650 VSNRNVRCVTNVEAFSLSVADLEDVTSLFSRFLRSHRVQGAIRYESPYWRLRAAMQIQVA 709

Query: 671 WRYRKKRLNRADTSHSLSNQ 690
           WRYRK++L R +T+HS SN+
Sbjct: 710 WRYRKRQLQRLNTAHSNSNR 729
Putative cyclic nucleotide-gated ion channel.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LD37|CNG20_ARATH Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 Back     alignment and function description
>sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 Back     alignment and function description
>sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 Back     alignment and function description
>sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 Back     alignment and function description
>sp|Q8L7Z0|CNG17_ARATH Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SL29|CNG15_ARATH Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1 Back     alignment and function description
>sp|Q9SJA4|CNG14_ARATH Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query693
449439591718 PREDICTED: probable cyclic nucleotide-ga 0.972 0.938 0.592 0.0
297830400739 cyclic nucleotide-binding transporter 1 0.945 0.886 0.558 0.0
161963244632 cyclic nucleotide gated channel [Malus x 0.741 0.813 0.595 1e-179
255567305778 Cyclic nucleotide-gated ion channel, put 0.546 0.487 0.744 1e-163
356531092766 PREDICTED: probable cyclic nucleotide-ga 0.536 0.485 0.739 1e-161
356531094781 PREDICTED: probable cyclic nucleotide-ga 0.541 0.480 0.730 1e-160
356560067766 PREDICTED: probable cyclic nucleotide-ga 0.536 0.485 0.742 1e-157
224125770785 predicted protein [Populus trichocarpa] 0.539 0.476 0.730 1e-156
356560069778 PREDICTED: probable cyclic nucleotide-ga 0.548 0.488 0.702 1e-155
356529446774 PREDICTED: probable cyclic nucleotide-ga 0.538 0.481 0.718 1e-155
>gi|449439591|ref|XP_004137569.1| PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  781 bits (2018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/729 (59%), Positives = 514/729 (70%), Gaps = 55/729 (7%)

Query: 1   MAGDEKDEMPMLSDSQSKSSDRNFDFRLQTFASRTRSASMSITMNSTDSFEPEANLVGLT 60
           MA  EKD++PMLS++     D   D    ++AS  RS+S+SI  NS+  +  EANLVG T
Sbjct: 1   MAAFEKDDIPMLSNTDPPMFDEQVDSYFPSYASLGRSSSLSIPENSSGMYGSEANLVGHT 60

Query: 61  GPLRNERRTQFLQMSGPLYSNRKPDHIFRRNQGVTGVNLVETKAEKFPSFSGMDQNDWPD 120
           GPLR ER +    +SG   +  KP  + +   GVT     E  AEKFPSF  +D++DW  
Sbjct: 61  GPLRIERSS--FMVSGSKKTGSKPKKLSQSKPGVTESKTAEPLAEKFPSFKIVDESDWSI 118

Query: 121 DRYEAKNEHLLRSGQLGMCNDPYCTTCPTY-YKATRSKHSKSSGIFDPKFHNALYGDAKG 179
             Y  +NEHL++SGQLG+CNDP+C TCPTY  KA++ K S+ SGIFD KFHN LYG  KG
Sbjct: 119 HNYAGRNEHLIKSGQLGLCNDPFCITCPTYNSKASQQKSSRMSGIFDAKFHNDLYGGGKG 178

Query: 180 WARRFISS---LQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKC 236
           WAR+F S    L  Y+PG+MNPH ++VQQW +FFVI+CLVAIF+DPLFFFLLSVQ+NNKC
Sbjct: 179 WARKFQSFWCFLLSYIPGVMNPHAKVVQQWNKFFVISCLVAIFLDPLFFFLLSVQENNKC 238

Query: 237 IVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLR 296
           IVI+WP T  +VV RSMTD IYFL++LLQFRLAYVAPESRVVGAGELVDHPKKIA+NYL+
Sbjct: 239 IVIDWPLTTTLVVFRSMTDFIYFLHMLLQFRLAYVAPESRVVGAGELVDHPKKIAMNYLK 298

Query: 297 GYFFIDFFVALPLPQRV-----------------NQCLRDACHNSSIQDCKKFLDCGHGN 339
           G FFID  V LPLPQ +                    LR A     I    +FL    G 
Sbjct: 299 GNFFIDLLVVLPLPQIIIFLILPKSLGSSGANYAKNLLRTAVTVQYIPRLYRFLPLLAGQ 358

Query: 340 GGAEYSQDQTWKSWS--------------------GNQQASDCFEKDKFSYGIYEQAVKL 379
             + +  +  W ++                     G Q+ + CF +   + G       +
Sbjct: 359 SPSGFVFETAWANFVINLLTFMLAGHIVGSFWYLLGLQRVTRCFREACINTGNRSCLEYI 418

Query: 380 TTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQN 439
              +   +R          QISTLAGNQ PSY+V EVLFTM IIG+GLLLFA LIGNMQN
Sbjct: 419 DCGHGDESR----------QISTLAGNQVPSYYVYEVLFTMGIIGLGLLLFALLIGNMQN 468

Query: 440 FLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLP 499
           FLQAL +RRL+MSLRRRDVEQWM HRRLPE LRRQVR+AERYNWA+TRGVNE+ +F NLP
Sbjct: 469 FLQALGRRRLEMSLRRRDVEQWMEHRRLPEGLRRQVRQAERYNWASTRGVNEERIFENLP 528

Query: 500 EDLQREIRRHLFKFVKKVRIFALMD-EPILDAICERLRQKTYISGSKILYRGGLIEKMVF 558
           EDLQ+ IRRHLFKFV KVRIFALMD EPILDAI ERLRQKTYI GS++   G +IEKMVF
Sbjct: 529 EDLQKNIRRHLFKFVNKVRIFALMDYEPILDAIRERLRQKTYIEGSEVFSAGDIIEKMVF 588

Query: 559 IVRGKMES-IGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVR 617
           IVRGKMES +  +GI V LSEGD CGEELLTWCLEHSS+N+D KR ++P  RL+ NRTVR
Sbjct: 589 IVRGKMESRVDGNGIVVPLSEGDVCGEELLTWCLEHSSLNKDMKRQQVPAPRLVSNRTVR 648

Query: 618 CLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWRYRKKR 677
           CL+NVEAFSLRA D+EEVTS+F+RFLR+PRVQGAIRYESPYWR  AA+ IQVAWRYRK+R
Sbjct: 649 CLSNVEAFSLRAVDLEEVTSMFSRFLRNPRVQGAIRYESPYWRYLAAMRIQVAWRYRKRR 708

Query: 678 LNRADTSHS 686
           L+R  TS S
Sbjct: 709 LSRVQTSQS 717

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297830400|ref|XP_002883082.1| cyclic nucleotide-binding transporter 1 [Arabidopsis lyrata subsp. lyrata] gi|297328922|gb|EFH59341.1| cyclic nucleotide-binding transporter 1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|161963244|dbj|BAF95185.1| cyclic nucleotide gated channel [Malus x domestica] Back     alignment and taxonomy information
>gi|255567305|ref|XP_002524633.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223536102|gb|EEF37758.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356531092|ref|XP_003534112.1| PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356531094|ref|XP_003534113.1| PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356560067|ref|XP_003548317.1| PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|224125770|ref|XP_002329713.1| predicted protein [Populus trichocarpa] gi|222870621|gb|EEF07752.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356560069|ref|XP_003548318.1| PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356529446|ref|XP_003533303.1| PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query693
TAIR|locus:2090572764 CNBT1 "cyclic nucleotide-bindi 0.533 0.484 0.699 2.8e-233
TAIR|locus:2090562729 CNGC19 "cyclic nucleotide gate 0.538 0.511 0.639 2.9e-207
TAIR|locus:2013139753 CNGC8 "cyclic nucleotide gated 0.507 0.467 0.425 3.3e-96
TAIR|locus:2062814678 CNGC15 "cyclic nucleotide-gate 0.503 0.514 0.405 2.6e-94
TAIR|locus:2200502738 CNGC7 "cyclic nucleotide gated 0.510 0.479 0.420 1.4e-93
TAIR|locus:2118816720 CNGC17 "cyclic nucleotide-gate 0.520 0.501 0.404 4.3e-92
TAIR|locus:2163776716 CNGC1 "cyclic nucleotide gated 0.532 0.515 0.376 3e-89
TAIR|locus:2046703726 CNGC14 "cyclic nucleotide-gate 0.520 0.497 0.391 6.3e-89
TAIR|locus:2097860705 CNGC16 "cyclic nucleotide-gate 0.512 0.503 0.376 1.5e-83
TAIR|locus:2185510706 CNGC18 "AT5G14870" [Arabidopsi 0.509 0.5 0.378 1.2e-81
TAIR|locus:2090572 CNBT1 "cyclic nucleotide-binding transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1371 (487.7 bits), Expect = 2.8e-233, Sum P(2) = 2.8e-233
 Identities = 263/376 (69%), Positives = 309/376 (82%)

Query:   311 QRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSY 370
             QRVNQCLR+AC N   ++C+  +DCG+GN         TWK    N  A+ CF++D F Y
Sbjct:   391 QRVNQCLRNACGNFG-RECQDLIDCGNGNSSVLVRA--TWKD---NASANACFQEDGFPY 444

Query:   371 GIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLF 430
             GIY +AV LT  +++ TRY YSLFWGFQQISTLAGNQ PSYF+GEV FTM IIG+GLLLF
Sbjct:   445 GIYLKAVNLTNHSNLFTRYSYSLFWGFQQISTLAGNQVPSYFLGEVFFTMGIIGLGLLLF 504

Query:   431 AFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVN 490
             A LIGNMQNFLQAL KR L+M+LRRRDVEQWM HRRLP+ +RR+VREAER+NWAATRGVN
Sbjct:   505 ALLIGNMQNFLQALGKRNLEMTLRRRDVEQWMSHRRLPDGIRRRVREAERFNWAATRGVN 564

Query:   491 EDMLFTNLPEDLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRG 550
             E++LF N+P+DLQR+IRRHLFKF+KKVRIF+LMDEPILDAI ERL+Q+TYI  S +L+RG
Sbjct:   565 EELLFENMPDDLQRDIRRHLFKFLKKVRIFSLMDEPILDAIRERLKQRTYIGSSTVLHRG 624

Query:   551 GLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRL 610
             GL+EKMVFIVRG+MESIGEDG  + L EGD CGEELLTWCLE SSVN D  R R+P + L
Sbjct:   625 GLVEKMVFIVRGEMESIGEDGSVLPLYEGDVCGEELLTWCLERSSVNPDGTRIRMPSKGL 684

Query:   611 LCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVA 670
             L +R VRC+TNVEAFSL  AD+E+VTSLF+RFLRS RVQGAIRY+SPYWR RAA  IQVA
Sbjct:   685 LSSRNVRCVTNVEAFSLSVADLEDVTSLFSRFLRSHRVQGAIRYDSPYWRLRAARQIQVA 744

Query:   671 WRYRKKRLNRADTSHS 686
             WRYR++RL+R  T  S
Sbjct:   745 WRYRRRRLHRLCTPQS 760
GO:0005216 "ion channel activity" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006811 "ion transport" evidence=IEA
GO:0030551 "cyclic nucleotide binding" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005516 "calmodulin binding" evidence=ISS
GO:0009624 "response to nematode" evidence=IEP
GO:0000165 "MAPK cascade" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TAIR|locus:2090562 CNGC19 "cyclic nucleotide gated channel 19" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118816 CNGC17 "cyclic nucleotide-gated channel 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046703 CNGC14 "cyclic nucleotide-gated channel 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097860 CNGC16 "cyclic nucleotide-gated channel 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185510 CNGC18 "AT5G14870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query693
cd00038115 cd00038, CAP_ED, effector domain of the CAP family 1e-08
PLN03192 823 PLN03192, PLN03192, Voltage-dependent potassium ch 2e-07
smart00100120 smart00100, cNMP, Cyclic nucleotide-monophosphate 0.001
>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information 
 Score = 53.1 bits (128), Expect = 1e-08
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 24/122 (19%)

Query: 519 IFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESI-----GEDGIA 573
           +F+ +D+  L+ + + L ++ + +G  I+ +G   + +  ++ G +E       G + I 
Sbjct: 1   LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60

Query: 574 VCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIE 633
             L  GD  GE  L      S+                   TVR LT+ E   L  +D  
Sbjct: 61  GFLGPGDLFGELALLGNGPRSA-------------------TVRALTDSELLVLPRSDFR 101

Query: 634 EV 635
            +
Sbjct: 102 RL 103

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 693
KOG0498 727 consensus K+-channel ERG and related proteins, con 100.0
PLN03192 823 Voltage-dependent potassium channel; Provisional 100.0
KOG0501 971 consensus K+-channel KCNQ [Inorganic ion transport 100.0
KOG0500536 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG0499 815 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG3713477 consensus Voltage-gated K+ channel KCNB/KCNC [Inor 99.54
PRK09392236 ftrB transcriptional activator FtrB; Provisional 99.33
PRK11753211 DNA-binding transcriptional dual regulator Crp; Pr 99.28
cd00038115 CAP_ED effector domain of the CAP family of transc 99.28
PF0002791 cNMP_binding: Cyclic nucleotide-binding domain; In 99.27
smart00100120 cNMP Cyclic nucleotide-monophosphate binding domai 99.2
PRK11161235 fumarate/nitrate reduction transcriptional regulat 99.12
KOG1113368 consensus cAMP-dependent protein kinase types I an 99.1
COG0664214 Crp cAMP-binding proteins - catabolite gene activa 99.09
KOG1545507 consensus Voltage-gated shaker-like K+ channel KCN 99.09
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.08
PRK10402226 DNA-binding transcriptional activator YeiL; Provis 99.07
PF0841277 Ion_trans_N: Ion transport protein N-terminal; Int 99.06
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.05
COG2905 610 Predicted signal-transduction protein containing c 99.01
KOG1419654 consensus Voltage-gated K+ channel KCNQ [Inorganic 98.98
PLN02868 413 acyl-CoA thioesterase family protein 98.97
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 98.85
TIGR03697193 NtcA_cyano global nitrogen regulator NtcA, cyanoba 98.84
PRK09391230 fixK transcriptional regulator FixK; Provisional 98.83
PRK13918202 CRP/FNR family transcriptional regulator; Provisio 98.8
KOG1113368 consensus cAMP-dependent protein kinase types I an 98.69
PF00520200 Ion_trans: Ion transport protein calcium channel s 98.67
KOG1420 1103 consensus Ca2+-activated K+ channel Slowpoke, alph 98.61
KOG4390632 consensus Voltage-gated A-type K+ channel KCND [In 98.36
PRK10537393 voltage-gated potassium channel; Provisional 97.99
KOG3684489 consensus Ca2+-activated K+ channel proteins (inte 97.89
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 97.53
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 97.37
PRK11832207 putative DNA-binding transcriptional regulator; Pr 97.11
PF04831153 Popeye: Popeye protein conserved region; InterPro: 96.94
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 96.73
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 96.53
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 96.35
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 95.81
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 95.73
KOG3193 1087 consensus K+ channel subunit [Inorganic ion transp 94.61
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 93.47
KOG3827400 consensus Inward rectifier K+ channel [Inorganic i 92.62
KOG2302 1956 consensus T-type voltage-gated Ca2+ channel, pore- 90.94
PLN032231634 Polycystin cation channel protein; Provisional 88.56
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 88.35
PF0788371 Cupin_2: Cupin domain; InterPro: IPR013096 This fa 80.26
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-83  Score=724.25  Aligned_cols=459  Identities=41%  Similarity=0.722  Sum_probs=407.0

Q ss_pred             cCCeeEcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCceeeecCCcchhHHHHHHHHHHHHHHHHHhhcceeE
Q 005497          191 YVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAY  270 (693)
Q Consensus       191 ~~~~ii~P~S~f~~~Wd~i~~i~~l~~~~~iP~~i~F~~~~~~~~~~~~~~~~~~~~~~i~~i~diiF~lDIll~F~t~y  270 (693)
                      ...+||+|+|+++..||.+++++++|+++++|++++|+...++..|  +|......+.+++.++|++|++||+++|+|||
T Consensus        65 ~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtay  142 (727)
T KOG0498|consen   65 SRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAY  142 (727)
T ss_pred             ccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEE
Confidence            3456999999999999999999999999999999999998888888  88888999999999999999999999999999


Q ss_pred             EcCCccccCCCeEEecHHHHHHHHHhhhHHHHHHHhcChhh--------------------------hhHHHHHHHhhhh
Q 005497          271 VAPESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQ--------------------------RVNQCLRDACHNS  324 (693)
Q Consensus       271 ~~~~s~~~~~g~~V~d~k~Ia~~Ylk~~FiiDlls~iPl~~--------------------------Rl~rllr~~~~~~  324 (693)
                      ++++|     -++|.||++||+||+++||++|++|++|+++                          ||.|+.|.+.+..
T Consensus       143 v~~~s-----~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~  217 (727)
T KOG0498|consen  143 VDPSS-----YELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFA  217 (727)
T ss_pred             ECCCC-----ceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99954     3899999999999999999999999999987                          4555555444332


Q ss_pred             ch------h----------------hhhHHhhhccccccchhhhccccc-ccccccc-cccccccCcccccchhhhcccc
Q 005497          325 SI------Q----------------DCKKFLDCGHGNGGAEYSQDQTWK-SWSGNQQ-ASDCFEKDKFSYGIYEQAVKLT  380 (693)
Q Consensus       325 ~i------~----------------~~~h~l~c~~~~i~~~~~~~~~~~-~wl~~~~-~~~C~~~~~~~~~~~~~~~~l~  380 (693)
                      .+      .                ++.||++|+||+++..+....... .|+.... ...|- ...+.+|.        
T Consensus       218 r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~-~~~~~fg~--------  288 (727)
T KOG0498|consen  218 RLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCY-NLSFTFGI--------  288 (727)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccC-cccccccc--------
Confidence            11      0                233999999999987665433333 6764321 11221 11233443        


Q ss_pred             CCcchHHHHHHHHHHHhhhccccccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005497          381 TENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQ  460 (693)
Q Consensus       381 ~~~~~~~~Yl~SlYwai~tmtTVGyGdi~p~~~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~  460 (693)
                        .+++.+|++|+||+++||||+|||+++|+|..|++|+|++|++|.++||++||||+++++.+..+..+|+.+++++++
T Consensus       289 --~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~  366 (727)
T KOG0498|consen  289 --YSLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQ  366 (727)
T ss_pred             --hhHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHH
Confidence              566779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHhhCCCChHHHHhcCChhHHHHHHHHHHH-HhhhhhhcccCCHHHHHHHHHHcceee
Q 005497          461 WMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKKVRIFALMDEPILDAICERLRQKT  539 (693)
Q Consensus       461 ym~~~~Lp~~Lq~rV~~y~~y~~~~~~~~~e~~iL~~Lp~~Lr~~I~~~~~~-~l~~i~~F~~ls~~~l~~L~~~l~~~~  539 (693)
                      ||++++||++||+||++|++|+|..++|+||+++|++||++||++|.+|+|. +++++|+|+.+|++++++|+.+++...
T Consensus       367 ~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~  446 (727)
T KOG0498|consen  367 WMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEY  446 (727)
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhc
Confidence            9999999999999999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             eCCCCEEEccCCccCeEEEEEeeEEEEEecCC----eEEEcCCCCeEehhhhhhhccccccccccccccCCCCcccceeE
Q 005497          540 YISGSKILYRGGLIEKMVFIVRGKMESIGEDG----IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRT  615 (693)
Q Consensus       540 y~~ge~I~~~G~~~~~~yfI~~G~v~v~~~~g----~~~~l~~Gd~fGe~~ll~~~~~~~~~~~~~~~~~p~~~~~~~~t  615 (693)
                      |.|||+|++|||++++||||.+|.+++...+|    +...|++||+|||+.+.++++            .     |+++|
T Consensus       447 f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~------------~-----p~t~T  509 (727)
T KOG0498|consen  447 FTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLD------------L-----PQTRT  509 (727)
T ss_pred             cCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhc------------C-----CCCce
Confidence            99999999999999999999999999998664    899999999999777776531            2     46899


Q ss_pred             EEEcceEEEEEeeHHHHHHHHHHhHhhccChhhhhhhhhcCchhhhHHHHHHHHHHHHHHHHhhhcccCC
Q 005497          616 VRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWRYRKKRLNRADTSH  685 (693)
Q Consensus       616 v~Alt~~~l~~L~~~df~~ll~~~p~~l~~p~~~~~~r~~s~~~~~~a~~~~q~~~~~~~~r~~~~~~~~  685 (693)
                      |+|+|.|+++.|+++||.+++++|| .+++..+++.+++++.+||.++++.+|++|+++.+|+...+.+.
T Consensus       510 Vralt~~el~~L~~~dL~~V~~~f~-~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~~l~~  578 (727)
T KOG0498|consen  510 VRALTYCELFRLSADDLKEVLQQFR-RLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEEELAL  578 (727)
T ss_pred             eehhhhhhHHhccHHHHHHHHHHhH-HHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccchhhh
Confidence            9999999999999999999999997 77788899999999999999999999999999999986665544

>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09392 ftrB transcriptional activator FtrB; Provisional Back     alignment and domain information
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional Back     alignment and domain information
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] Back     alignment and domain information
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional Back     alignment and domain information
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] Back     alignment and domain information
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02868 acyl-CoA thioesterase family protein Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial Back     alignment and domain information
>PRK09391 fixK transcriptional regulator FixK; Provisional Back     alignment and domain information
>PRK13918 CRP/FNR family transcriptional regulator; Provisional Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11832 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query693
1wgp_A137 Solution Structure Of The Cnmp-Binding Domain From 2e-18
3ukn_A212 Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN 2e-09
3u0z_A210 Tetramerization Dynamics Of The C-Terminus Underlie 4e-06
3etq_A204 X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 4e-06
3u10_A210 Tetramerization Dynamics Of The C-Terminus Underlie 1e-05
1q3e_A207 Hcn2j 443-645 In The Presence Of Cgmp Length = 207 2e-05
2q0a_A200 Structure And Rearrangements In The Carboxy-Termina 2e-05
3ffq_A202 Hcn2i 443-640 Apo-State Length = 202 2e-05
2ptm_A198 Structure And Rearrangements In The Carboxy-Termina 2e-05
3u11_A210 Tetramerization Dynamics Of The C-Terminus Underlie 2e-05
3otf_A220 Structural Basis For The Camp-Dependent Gating In H 3e-05
3bpz_A202 Hcn2-I 443-460 E502k In The Presence Of Camp Length 5e-05
4hbn_A205 Crystal Structure Of The Human Hcn4 Channel C-termi 1e-04
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 Back     alignment and structure 
Iteration: 1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/134 (40%), Positives = 78/134 (58%), Gaps = 16/134 (11%)
Query: 514 VKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG-- 571
           V++V +F  MDE +LDAICERL+   +   S ++  G  + +M+FI+RG++ES+  DG  
Sbjct: 8   VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 572 ----IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSL 627
                   L EGD CG+ELLTW L+  S +       +P       RTV+ LT VEAF+L
Sbjct: 68  SGFYNRSLLKEGDFCGDELLTWALDPKSGS------NLPSS----TRTVKALTEVEAFAL 117
Query: 628 RAADIEEVTSLFAR 641
            A +++ V S F R
Sbjct: 118 IADELKFVASQFRR 131
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2 21 SPACE Group Length = 212 Back     alignment and structure
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204 Back     alignment and structure
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207 Back     alignment and structure
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200 Back     alignment and structure
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202 Back     alignment and structure
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198 Back     alignment and structure
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 Back     alignment and structure
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human Hcn4 Channel Length = 220 Back     alignment and structure
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202 Back     alignment and structure
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query693
3ukn_A212 Novel protein similar to vertebrate potassium VOL 5e-61
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 6e-47
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 3e-46
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 1e-33
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 2e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 8e-08
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 8e-07
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 2e-05
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 5e-06
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 5e-06
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 1e-05
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 3e-05
4din_B381 CAMP-dependent protein kinase type I-beta regulat 3e-05
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 4e-05
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 4e-05
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 4e-04
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 5e-04
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 7e-04
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 Back     alignment and structure
 Score =  202 bits (516), Expect = 5e-61
 Identities = 42/205 (20%), Positives = 90/205 (43%), Gaps = 17/205 (8%)

Query: 441 LQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPE 500
            Q +  RR     R +D++ ++R  RLP+ L +++ E  +  W+   G++   L  + P+
Sbjct: 4   DQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPD 63

Query: 501 DLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIV 560
           +L+ +I  HL K + ++ +F       L ++   ++      G  ++ +G  ++ + F+ 
Sbjct: 64  ELRADIAMHLNKELLQLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVC 123

Query: 561 RGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLT 620
            G ME + ++ +   L +GD  G + LT         +  K           N  V+ LT
Sbjct: 124 SGSMEVLKDNTVLAILGKGDLIGSDSLTK-------EQVIKT----------NANVKALT 166

Query: 621 NVEAFSLRAADIEEVTSLFARFLRS 645
             +   +    + EV  L+  + + 
Sbjct: 167 YCDLQYISLKGLREVLRLYPEYAQK 191
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 693
d1wgpa_137 b.82.3.2 (A:) Probable cyclic nucleotide-gated ion 5e-15
d1q3ea_193 b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu 4e-11
d1o7fa2155 b.82.3.2 (A:13-167) Regulatory domain of Epac2, do 5e-05
d1lnqa280 f.14.1.1 (A:19-98) Potassium channel-related prote 1e-04
d1cx4a2147 b.82.3.2 (A:266-412) Regulatory subunit of Protein 2e-04
d1ne6a2132 b.82.3.2 (A:245-376) Regulatory subunit of Protein 2e-04
d1r3jc_103 f.14.1.1 (C:) Potassium channel protein {Streptomy 0.004
d1vp6a_133 b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo 0.004
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 70.4 bits (171), Expect = 5e-15
 Identities = 53/135 (39%), Positives = 76/135 (56%), Gaps = 16/135 (11%)

Query: 513 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG- 571
            V++V +F  MDE +LDAICERL+   +   S ++  G  + +M+FI+RG++ES+  DG 
Sbjct: 7   GVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGG 66

Query: 572 -----IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFS 626
                    L EGD CG+ELLTW L+  S +                RTV+ LT VEAF+
Sbjct: 67  RSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPS----------STRTVKALTEVEAFA 116

Query: 627 LRAADIEEVTSLFAR 641
           L A +++ V S F R
Sbjct: 117 LIADELKFVASQFRR 131
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query693
d1q3ea_193 HCN pacemaker channel {Mouse (Mus musculus) [TaxId 99.98
d1wgpa_137 Probable cyclic nucleotide-gated ion channel 6 {Th 99.72
d1o7fa2155 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.66
d1ne6a1136 Regulatory subunit of Protein kinase A {Cow (Bos t 99.66
d1cx4a2147 Regulatory subunit of Protein kinase A {Rat (Rattu 99.63
d1cx4a1136 Regulatory subunit of Protein kinase A {Rat (Rattu 99.62
d1vp6a_133 Putative ion channel CnbD {Mesorhizobium loti [Tax 99.6
d1ne6a2132 Regulatory subunit of Protein kinase A {Cow (Bos t 99.59
d1o7fa3124 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.57
d1zyba2147 Probable transcription regulator BT4300, N-termina 99.55
d2gaua2142 Transcriptional regulator PG0396, N-terminal domai 99.47
d1i5za2132 Catabolite gene activator protein, N-terminal doma 99.4
d2oz6a2134 Cyclic AMP receptor-like protein Vfr {Pseudomonas 99.36
d3e5ua2139 Chlorophenol reduction protein CprK {Desulfitobact 99.27
d1ft9a2132 CO-sensing protein CooA, N-terminal domain {Rhodos 99.26
d1o5la1129 CRP-like transcriptional regulator TM1171, N-termi 99.24
d2zcwa2112 Transcriptional regulator TTHA1359, N-terminal dom 99.01
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 98.98
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 98.71
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 98.65
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 98.18
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 96.4
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 88.61
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=2.5e-30  Score=224.41  Aligned_cols=183  Identities=23%  Similarity=0.363  Sum_probs=171.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHH-HHHHHHHCCCC
Q ss_conf             99999999999999999997699988999999999999996179975778740995689999999998-86431100049
Q 005497          445 VKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKKVRIFALM  523 (693)
Q Consensus       445 ~~~~~~~~~~~~~v~~yM~~~~Lp~~Lr~rV~~Y~~y~w~~~k~~~e~~iL~~Lp~~Lr~eI~~~~~~-~l~~i~~F~~~  523 (693)
                      ++++.+|++++..+++||+.+++|.+|+.||++||+|.| +.++.+++++++.||+.|+.++..+++. +++++|+|.++
T Consensus         1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~-~~~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~   79 (193)
T d1q3ea_           1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRY-QGKMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANA   79 (193)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-TTCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTS
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             925899999999999999984999999999999999986-5036659999987992234899999999998202477761


Q ss_pred             CHHHHHHHHHHCCEEEECCCCEEECCCCCCCEEEEEEEEEEEEEECCCEEEECCCCCEEEHHHHHHHCCCCCCCCCCCCC
Q ss_conf             99899999977423463799889815880476999993279999338738984799967103553101235654344234
Q 005497          524 DEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRY  603 (693)
Q Consensus       524 s~~~l~~L~~~lk~~~y~~ge~I~~~Gd~~~~lYfI~~G~v~v~~~~g~~~~l~~G~~fGe~~ll~~l~~~~~~~~~~~~  603 (693)
                      ++.++..|+..++...|.||++|+++|+.++++|||.+|.|+++..++....+.+|++|||.+++.+             
T Consensus        80 ~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~~~~~l~~G~~fGe~~~~~~-------------  146 (193)
T d1q3ea_          80 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTR-------------  146 (193)
T ss_dssp             CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CCCEEEECTTCEECHHHHHHC-------------
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEEEEEEEEECCCCCEEEECCCEEEEEEECCCC-------------
T ss_conf             2999999999978876226843103588775005751205776217862146506536554202477-------------


Q ss_pred             CCCCCCCCCEEEEEECCEEEEEEEEHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             57897433101899856499999619899999998385205944563564
Q 005497          604 RIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIR  653 (693)
Q Consensus       604 ~~p~~r~~~~~tv~a~t~~el~~L~~~df~~ll~~~~~~l~~p~~~~~~r  653 (693)
                          .  ++.++++|.++|+++.|++++|.++++.|      |.+...+.
T Consensus       147 ----~--~~~~~~~a~~~~~l~~l~~~~f~~ll~~~------p~~~~~~~  184 (193)
T d1q3ea_         147 ----G--RRTASVRADTYCRLYSLSVDNFNEVLEEY------PMMRRAFE  184 (193)
T ss_dssp             ----S--BCSSEEEESSCEEEEEEEHHHHHHHHHHS------GGGHHHHH
T ss_pred             ----C--CCCCCCEECCCEEEEEEEHHHHHHHHHHC------HHHHHHHH
T ss_conf             ----7--42124224574699997699999999879------99999999
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Back     information, alignment and structure
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure