Citrus Sinensis ID: 005501
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 693 | 2.2.26 [Sep-21-2011] | |||||||
| Q84P17 | 727 | Probable acyl-activating | yes | no | 0.992 | 0.946 | 0.694 | 0.0 | |
| F4KBF3 | 721 | Probable acyl-activating | no | no | 0.978 | 0.940 | 0.502 | 0.0 | |
| A8FUF1 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.777 | 0.829 | 0.258 | 2e-35 | |
| A1U2S9 | 649 | Acetyl-coenzyme A synthet | yes | no | 0.789 | 0.842 | 0.256 | 2e-35 | |
| Q88EH6 | 653 | Acetyl-coenzyme A synthet | yes | no | 0.780 | 0.828 | 0.257 | 4e-35 | |
| A9KY56 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.780 | 0.832 | 0.247 | 1e-34 | |
| Q8Z1R0 | 652 | Acetyl-coenzyme A synthet | N/A | no | 0.721 | 0.766 | 0.270 | 2e-34 | |
| A6WM52 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.780 | 0.832 | 0.247 | 3e-34 | |
| A3D3E8 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.780 | 0.832 | 0.247 | 3e-34 | |
| A4Y7Y7 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.780 | 0.832 | 0.244 | 3e-34 |
| >sp|Q84P17|AEE18_ARATH Probable acyl-activating enzyme 18, peroxisomal OS=Arabidopsis thaliana GN=AAE18 PE=2 SV=1 | Back alignment and function desciption |
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Score = 1009 bits (2608), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/693 (69%), Positives = 571/693 (82%), Gaps = 5/693 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
M K+I E+ +D +K GL LE+A+EFDK++ VI+ + D R+ W+ LV VLKPWHP
Sbjct: 1 MWKSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
H LHQL+YYSVY++WD+S+ GPPLYWFPSL QSK TNLG +E HGP+LLG +YK+P+ S
Sbjct: 61 HPLHQLLYYSVYSNWDSSVHGPPLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLES 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LF++F+VEHPE YW + E+S+VF P+CIL+ KSK GTWLP +VLNIAECCL
Sbjct: 121 FELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCILN---KSKPEGTWLPDAVLNIAECCL 177
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
+PS+H +KED++VA+VWR + D+S VN MT KELREQVMLVANA+ F KGD IAIDM
Sbjct: 178 MPSSHPKKEDDSVAVVWRNEGFDDSPVNRMTIKELREQVMLVANAISGSFEKGDTIAIDM 237
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAIILAG +VVSIADSFAA+EIATRL++SKAKGIFTQD+ILRGGR+FPLY
Sbjct: 238 PMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGGRRFPLY 297
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-PNYYSPVYNPVDAVV 359
S+V+ AAP K IVLPA G ++ + LREQD+SW DFLS+ H NYY P+Y PV++V+
Sbjct: 298 SRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYLPVESVI 357
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQLS IR +GWAH+D++VG YCWPTNLGWVMGP ++FS F
Sbjct: 358 NILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPTLMFSCF 417
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L GATLALY GSPL R FGKFVQDAGVTVLGTVPSLVK W+ TNC+EGL+WTKI+ FA+T
Sbjct: 418 LTGATLALYSGSPLGRGFGKFVQDAGVTVLGTVPSLVKTWKRTNCMEGLNWTKIKFFATT 477
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SNVDD LWLSSKA Y +IE CGGTEL+S+YI GS LQPQAFGAFST +MT ++I
Sbjct: 478 GEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMTTRIIIF 537
Query: 540 DECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
DE GVPYPDDQPC GEVGLFP +LGA+DRLLNA+H+EVYF+GMPMYK LRRHGDI+KR
Sbjct: 538 DENGVPYPDDQPCTGEVGLFPQHLGATDRLLNANHDEVYFKGMPMYKETRLRRHGDIVKR 597
Query: 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659
TVGGY VQGRADDTMNLGGIKTSS+EIERVCDQADE I ETAA++++P GGPE+LVIF
Sbjct: 598 TVGGYYNVQGRADDTMNLGGIKTSSIEIERVCDQADECISETAAVTLTPPNGGPELLVIF 657
Query: 660 VVLKKGFTSQP-DKLKMIFSKAIQSKLNPLFKV 691
VLK+GF Q ++LKM FS+ IQ LNPLFKV
Sbjct: 658 AVLKEGFKQQSGEELKMKFSRTIQKDLNPLFKV 690
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May be involved in the peroxisomal activation of 2,4-dichlorophenoxybutyric acid (2,4-DB), a precursor of active auxins that inhibit root growth. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: - |
| >sp|F4KBF3|AAE17_ARATH Probable acyl-activating enzyme 17, peroxisomal OS=Arabidopsis thaliana GN=AAE17 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/694 (50%), Positives = 457/694 (65%), Gaps = 16/694 (2%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K++ + D+ +G+ + +E+ + L+ +I S E W + ++R++L P P
Sbjct: 4 KSLNSITKSDIEALGISGDVSEKLLRDLEDIIHGSS--TPPETWIQ-ISRRILHPNLPFS 60
Query: 63 LHQLVYYSVYNDWDASIKGPPL-YWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSF 121
HQ++YY Y D+ GP L W P + LTN+G LE G + LG YK+P++SF
Sbjct: 61 FHQMMYYGCYKDF-----GPDLPAWIPDPKVASLTNVGKLLEKRGKEFLGGNYKNPVSSF 115
Query: 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDR-TDKSKHGGTWLPGSVLNIAECCL 180
FQ+F+V +PE YW+ L E++++F PKCIL++ T GG WLPG+ LN A CL
Sbjct: 116 SSFQEFSVSNPEVYWKTVLDELNILFSVPPKCILEKDTSGDNPGGKWLPGAYLNPARNCL 175
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
RR +D + I WR++ D+ VN MT ELR QV L A+AL + + AIA+D
Sbjct: 176 TNGFKRRLDD--IVIRWRDEGSDDLPVNTMTLLELRSQVWLAAHALSALGLEEESAIAVD 233
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM V +VIIYLAI+LAG+VVVSIADSF+ REI+TRL++SKAK IFTQD I+RG + PL
Sbjct: 234 MPMNVESVIIYLAIVLAGHVVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGDKSIPL 293
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
Y +V+ A AIV+PA G+ + LRE+DLSW +FL + + R Y P A
Sbjct: 294 YRRVVDAEAPLAIVVPARGSSCRMKLREKDLSWNNFLGNA-RNLRGVEYVAAEKPAGAYT 352
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWT +S ++ A+ W H+D++ GDV WPTNLGW+MGP ++++S
Sbjct: 353 NILFSSGTTGEPKAIPWTNISPLKSAADAWCHLDVQRGDVVAWPTNLGWMMGPWLVYASL 412
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
+NGA + LY GSPL +F KFVQDA V+VLG +PS+V+ W+N+N G DW++IR F ST
Sbjct: 413 INGACMGLYNGSPLGPTFAKFVQDAEVSVLGVIPSIVRTWQNSNSTSGYDWSRIRCFGST 472
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SN+D+ LWL +A Y +IE CGGTE+ ++I GSLLQPQ+ AFSTA M L IL
Sbjct: 473 GEASNIDEYLWLMGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAAMGCKLFIL 532
Query: 540 DECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
DE P P VGE+ L P GAS LLN +H +VYF+GMP ++G LRRHGD+ +R
Sbjct: 533 DEDSNPIPPYAAGVGELALCPHMFGASSTLLNGNHFKVYFQGMPTFQGQILRRHGDLFER 592
Query: 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659
T GY GRADDTMNLGGIK S+EIERVC+ D+S+LETAAI V P GGPE LVI
Sbjct: 593 TSKGYYRAHGRADDTMNLGGIKVGSIEIERVCNSVDDSVLETAAIGVPPPSGGPEQLVIA 652
Query: 660 VVLKKGFTSQPD--KLKMIFSKAIQSKLNPLFKV 691
VV K S PD LK F+ IQ KLNPLFKV
Sbjct: 653 VVFKSPEFSNPDLNLLKKSFNSEIQKKLNPLFKV 686
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May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|A8FUF1|ACSA_SHESH Acetyl-coenzyme A synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=acsA PE=3 SV=1 | Back alignment and function description |
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Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 153/593 (25%), Positives = 254/593 (42%), Gaps = 54/593 (9%)
Query: 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAECC 179
+++Q+ ++ +PE +W + I + P + +T H + W LN + C
Sbjct: 26 KMYQE-SIVNPEGFWREHGQRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASANC 81
Query: 180 LLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAI 238
L H K+ + VAI+W D D +TY EL V ANAL + +GD + +
Sbjct: 82 L--DRHLEKDSDKVAIIWEGD--DAKDQRTITYGELHSDVCKFANALRSQGVRRGDIVTV 137
Query: 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFP 298
MPM A ++ LA G V + F+ IA+R+ K+K I T D +RGGR P
Sbjct: 138 YMPMVPEAAVVMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITADEGVRGGRIIP 197
Query: 299 LYSKVLGAAPL-------KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
L + + A K IVL G DV + +D+ W+ + + H P
Sbjct: 198 LKANIDEALSHPDVDCVEKVIVLERTGGDVNW-VEGRDIKWESLMDTASEHCIPEEMG-- 254
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVM 410
+ + +L++SG+TG PK + T + A ++ D K G+VY ++GW+
Sbjct: 255 ---AEDPLFLLYTSGSTGNPKGVLHTTGGYMVYAAMTHEYVFDYKDGEVYWCTADVGWIT 311
Query: 411 G-PVILFSSFLNGATLALYQG---SPLERSFGKFVQDAGVTVLGTVPSLVKAW--RNTNC 464
G +++ NGAT+ +++G P G+ V V +L T P+L++A
Sbjct: 312 GHSYMVYGPLANGATVLIHEGVPNYPTPARLGEMVDRHKVNILYTAPTLIRALMAEGKEQ 371
Query: 465 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQPQ 522
D + +R S GE ++ + W WYN +I E C + G +L
Sbjct: 372 FADFDGSSLRIMGSVGEP--INPEAW----RWYNEVIGHEHCPIVDTWWQTETGGILISP 425
Query: 523 AFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHE 575
GA T +A ++D G D G + + + G R + DH+
Sbjct: 426 LPGATDTKPGSATRPFFGVQPALVDNMGNII--DGATEGNLVILDSWPGQM-RTVFGDHD 482
Query: 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD 635
++GM GD KR GY + GR DD +N+ G + + E+E A
Sbjct: 483 RFALTYFKTFRGMYFT--GDGAKRDEDGYYWITGRVDDVINVSGHRLGTAEVESAL-VAH 539
Query: 636 ESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 688
E + E A + P + + +V L KG T + ++L+ K ++ ++ L
Sbjct: 540 EHVAEAAVVGY-PHDIKGQGIYAYVTLTKG-TIETEELRQELRKWVRKEIGAL 590
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Shewanella sediminis (strain HAW-EB3) (taxid: 425104) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A1U2S9|ACSA_MARAV Acetyl-coenzyme A synthetase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=acsA PE=3 SV=1 | Back alignment and function description |
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Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 158/616 (25%), Positives = 261/616 (42%), Gaps = 69/616 (11%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVV--FREAPKCILDRTDKSKHG 164
P++ RA + ++++ +VE P +W K I + F + D + S
Sbjct: 11 PEVAERALVNKSQYEEMYRQ-SVEDPNTFWGEHGKRIDWIKPFTKVKNSTYDYNNLSIK- 68
Query: 165 GTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVAN 224
W VLN + CL H + + AI++ D D S +TY+EL E+ AN
Sbjct: 69 --WFEDGVLNASANCL--DRHLEQRGDQTAIIFEGD--DPSVSRNVTYRELYEETCKFAN 122
Query: 225 AL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKG 283
L D KGD + I MPM V + LA G + + F+ +A R+ K++
Sbjct: 123 VLKDQGVKKGDVVTIYMPMIVETAVAMLACARIGAIHSVVFGGFSPEALAARIVNGKSRF 182
Query: 284 IFTQDFILRGGRKFPLYSKVLGAAPL-------KAIVLPAIGNDVGIPLRE-QDLSWKDF 335
+ T D LRGGR PL V A K IV+ GND +P E +DL ++D
Sbjct: 183 VITADEGLRGGRAIPLKKNVDSALKHEDDAKVDKVIVVSRTGNDQ-VPWTEGRDLRYEDL 241
Query: 336 L--SSVDYHPRP-NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI 392
+ +S + P P N P++ +L++SG+TG PK + T + + ++
Sbjct: 242 MKNASAECQPEPMNAEDPLF--------MLYTSGSTGAPKGVLHTTGGYMVYASMTHQYV 293
Query: 393 -DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPL---ERSFGKFVQDAGVT 447
D GDVY + GWV G IL+ NGA L++G P G+ V V
Sbjct: 294 FDYHDGDVYWCTADFGWVTGHSYILYGPLANGAITLLFEGVPNYPDSSRMGQVVDKHKVN 353
Query: 448 VLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505
+L T P+ ++A + +C++G ++ S GE ++ + W WY+ +I +
Sbjct: 354 ILYTAPTAIRALMAQGESCMDGTTRGSLKLLGSVGEP--INPEAW----EWYHRVIGN-- 405
Query: 506 GTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV------------ 553
S I + Q + G + A + +P+ QP +
Sbjct: 406 ----SKCPIVDTWWQTETGGILISPLPGAVDLKPGSATLPFFGVQPALVDNEGNILEGKT 461
Query: 554 -GEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRAD 612
G + + + G R + DHE YKGM GD +R GY + GR D
Sbjct: 462 EGNLVILDSWPGQM-RTIYGDHERFVQTYFSTYKGMYFT--GDGARRDEDGYYWITGRVD 518
Query: 613 DTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDK 672
D +N+ G + + E+E D+ + AA+ P + + ++V L +G D+
Sbjct: 519 DVLNVSGHRLGTAEVESALVAHDK--VAEAAVVGYPHDIKGQGIYVYVTLVQG-EEPSDE 575
Query: 673 LKMIFSKAIQSKLNPL 688
LK + ++ ++ P+
Sbjct: 576 LKKELVQWVRKEIGPI 591
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Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) (taxid: 351348) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q88EH6|ACSA1_PSEPK Acetyl-coenzyme A synthetase 1 OS=Pseudomonas putida (strain KT2440) GN=acsA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 160/621 (25%), Positives = 266/621 (42%), Gaps = 80/621 (12%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGG- 165
P++ D T ++Q+ +V +P+ +W + I + P + +T H
Sbjct: 11 PEVAATTLTDEATYKAMYQQ-SVINPDGFWREQAQRIDWI---KPFTKVKQTSFDDHHVD 66
Query: 166 -TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVAN 224
W LN++ CL H + + +AI+W D D S +TY+EL EQV AN
Sbjct: 67 IKWFADGTLNVSSNCL--DRHLEERGDQLAIIWEGD--DPSEHRNITYRELHEQVCKFAN 122
Query: 225 ALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKG 283
AL +GD + I MPM AV+ LA G + + F+ +A R+ K+K
Sbjct: 123 ALRGQDVHRGDVVTIYMPMIPEAVVAMLACARIGAIHSVVFGGFSPEALAGRIIDCKSKV 182
Query: 284 IFTQDFILRGGRKFPLYSKV-------LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL 336
+ T D +RGGR+ PL + V ++ K IV G D+ + +D+ ++D +
Sbjct: 183 VITADEGVRGGRRTPLKANVDLALTNPETSSVQKIIVCKRTGGDIAW-HQHRDIWYEDLM 241
Query: 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLK 395
H P + + IL++SG+TG+PK + T + A + D +
Sbjct: 242 KVASSHCAPKEMG-----AEEALFILYTSGSTGKPKGVLHTTGGYLVYAALTHERVFDYR 296
Query: 396 VGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSP----LERSFGKFVQDAGVTVLG 450
G+VY ++GWV G I++ NGAT L++G P + R K V V +L
Sbjct: 297 PGEVYWCTADVGWVTGHSYIVYGPLANGATTLLFEGVPNYPDITR-VSKIVDKHKVNILY 355
Query: 451 TVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESC-- 504
T P+ ++A +EG D + +R S GE ++ + W WY + E C
Sbjct: 356 TAPTAIRAMMAEGQAAVEGADGSSLRLLGSVGEP--INPEAW----NWYYKTVGKERCPI 409
Query: 505 ---------GGTELS-----SAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQ 550
GG +S + GS +P FG G +I D
Sbjct: 410 VDTWWQTETGGILISPLPGATGLKPGSATRP-FFGVVPALVDNLGNLI----------DG 458
Query: 551 PCVGEVGLFPLYLGASDRLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 607
G + + + G S R L DH+ + YF+ ++GM GD +R GY +
Sbjct: 459 AAEGNLVILDSWPGQS-RSLYGDHDRFVDTYFK---TFRGMYFT--GDGARRDEDGYYWI 512
Query: 608 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 667
GR DD +N+ G + + EIE A + E A + V P + + ++V L G
Sbjct: 513 TGRVDDVLNVSGHRMGTAEIESAM-VAHSKVAEAAVVGV-PHDIKGQGIYVYVTLNAGIE 570
Query: 668 SQPDKLKMIFSKAIQSKLNPL 688
+ ++L++ ++ ++ P+
Sbjct: 571 AS-EQLRLELKNWVRKEIGPI 590
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Pseudomonas putida (strain KT2440) (taxid: 160488) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A9KY56|ACSA_SHEB9 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS195) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 147/594 (24%), Positives = 252/594 (42%), Gaps = 53/594 (8%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAEC 178
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 24 YKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASAN 80
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
CL H + + VAI+W D E +TY EL +V ANAL + +GD +
Sbjct: 81 CL--DRHLAEHSDRVAIIWEGDNASEQ--RKITYGELHAEVCKFANALRSQGVRRGDIVT 136
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I MPM A + LA G V + F+ IA+R+ K+K I T D +RGGR
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITSDEGMRGGRAI 196
Query: 298 PLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + A K IVL G V + ++D+ W + + Y P
Sbjct: 197 PLKRNIDDALKNPDVTTVEKVIVLKRTGGIVDW-VEDRDVWWHSLMETAS-----EYCQP 250
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWV 409
+A + +L++SG+TG PK + T + + ++ D K G+VY ++GW+
Sbjct: 251 EEMDAEAPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGWI 310
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTN 463
G +++ NGAT+ +++G P S G+ + V++L T P+L++A
Sbjct: 311 TGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVSILYTAPTLIRALMAEGKQ 370
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQP 521
+ D + +R S GE ++ + W WY+ +I E C + G +L
Sbjct: 371 HFDKFDGSSLRIMGSVGEP--INPEAW----RWYHEVIGHEHCPIVDTWWQTETGGILIT 424
Query: 522 QAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADH 574
GA T +A ++D G + G + L + G R + DH
Sbjct: 425 PLPGATDTKPGSATRPFFGVQPALVDNMGNILEGENE--GNLVLLDSWPGQM-RTVYGDH 481
Query: 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQA 634
E ++GM GD +R GY + GR DD +N+ G + + E+E
Sbjct: 482 ERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVESAL--V 537
Query: 635 DESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 688
++ AA+ P + + +V L +G T + ++L+ + ++ ++ L
Sbjct: 538 SHELVAEAAVVGYPHDIKGQGIYAYVTLTRG-TEETEELRQELRQWVRKEIGAL 590
|
Shewanella baltica (strain OS195) (taxid: 399599) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q8Z1R0|ACSA_SALTI Acetyl-coenzyme A synthetase OS=Salmonella typhi GN=acs PE=3 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 147/544 (27%), Positives = 224/544 (41%), Gaps = 44/544 (8%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DASQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ IA R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAIAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R GR PL V A + IVL GND+ +DL W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGNDIDW-QEGRDLWWRDLIEK 243
Query: 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVG 397
P + N D + IL++SG+TG+PK + T + A + ++ D G
Sbjct: 244 AS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPG 298
Query: 398 DVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVP 453
D+Y ++GWV G +L+ GAT +++G P + V V +L T P
Sbjct: 299 DIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP 358
Query: 454 SLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511
+ ++A +EG D + +R S GE N + W W E C +
Sbjct: 359 TAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWW 414
Query: 512 AYIQGSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLG 564
G + GA +A ++D G +P + G + + + G
Sbjct: 415 QTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPG 472
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624
+ R L DHE +K M GD +R GY + GR DD +N+ G + +
Sbjct: 473 QA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGT 529
Query: 625 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK 684
EIE A I E A + + A G + + +V L G P+ L ++ +
Sbjct: 530 AEIESAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVRKE 586
Query: 685 LNPL 688
+ PL
Sbjct: 587 IGPL 590
|
Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis. Salmonella typhi (taxid: 90370) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A6WM52|ACSA_SHEB8 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS185) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 147/594 (24%), Positives = 250/594 (42%), Gaps = 53/594 (8%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAEC 178
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 24 YKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASAN 80
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
CL H + + VAI+W D E +TY EL V ANAL + +GD +
Sbjct: 81 CL--DRHLAEHSDRVAIIWEGDNASEQ--RKITYGELHADVCKFANALRSQGVRRGDIVT 136
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I MPM A + LA G V + F+ IA+R+ K+K I T D +RGGR
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITSDEGMRGGRAI 196
Query: 298 PLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + A K IVL G V + +D+ W + + Y P
Sbjct: 197 PLKRNIDDALKNPDVTTVEKVIVLKRTGGKVDW-VEGRDVWWHSLMETAS-----EYCQP 250
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWV 409
+A + +L++SG+TG PK + T + + ++ D K G+VY ++GW+
Sbjct: 251 EEMDAEAPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGWI 310
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTN 463
G +++ NGAT+ +++G P S G+ + V++L T P+L++A
Sbjct: 311 TGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVSILYTAPTLIRALMAEGKQ 370
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQP 521
+ D + +R S GE ++ + W WY+ +I E C + G +L
Sbjct: 371 HFDKFDGSSLRIMGSVGEP--INPEAW----RWYHEVIGHEHCPIVDTWWQTETGGILIT 424
Query: 522 QAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADH 574
GA T +A ++D G + G + L + G R + DH
Sbjct: 425 PLPGATDTKPGSATRPFFGVQPALVDNMGNILEGENE--GNLVLLDSWPGQM-RTVYGDH 481
Query: 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQA 634
E ++GM GD +R GY + GR DD +N+ G + + E+E
Sbjct: 482 ERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVESAL--V 537
Query: 635 DESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 688
++ AA+ P + + +V L +G T + ++L+ + ++ ++ L
Sbjct: 538 SHELVAEAAVVGYPHDIKGQGIYAYVTLTRG-TEETEELRQELRQWVRKEIGAL 590
|
Shewanella baltica (strain OS185) (taxid: 402882) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A3D3E8|ACSA_SHEB5 Acetyl-coenzyme A synthetase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 147/594 (24%), Positives = 250/594 (42%), Gaps = 53/594 (8%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAEC 178
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 24 YKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASAN 80
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
CL H + + VAI+W D E +TY EL V ANAL + +GD +
Sbjct: 81 CL--DRHLAEHSDRVAIIWEGDNASEQ--RKITYGELHADVCKFANALRSQGVRRGDIVT 136
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I MPM A + LA G V + F+ IA+R+ K+K I T D +RGGR
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVIITSDEGMRGGRAI 196
Query: 298 PLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + A K IVL G V + +D+ W + + Y P
Sbjct: 197 PLKRNIDDALKNPDVTTVEKVIVLKRTGGKVDW-VEGRDVWWHSLMETAS-----EYCQP 250
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWV 409
+A + +L++SG+TG PK + T + + ++ D K G+VY ++GW+
Sbjct: 251 EEMDAEAPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGWI 310
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTN 463
G +++ NGAT+ +++G P S G+ + V++L T P+L++A
Sbjct: 311 TGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVSILYTAPTLIRALMAEGKQ 370
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQP 521
+ D + +R S GE ++ + W WY+ +I E C + G +L
Sbjct: 371 HFDKFDGSSLRIMGSVGEP--INPEAW----RWYHEVIGHEHCPIVDTWWQTETGGILIT 424
Query: 522 QAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADH 574
GA T +A ++D G + G + L + G R + DH
Sbjct: 425 PLPGATDTKPGSATRPFFGVQPALVDNMGNILEGENE--GNLVLLDSWPGQM-RTVYGDH 481
Query: 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQA 634
E ++GM GD +R GY + GR DD +N+ G + + E+E
Sbjct: 482 ERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVESAL--V 537
Query: 635 DESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 688
++ AA+ P + + +V L +G T + ++L+ + ++ ++ L
Sbjct: 538 SHELVAEAAVVGYPHDIKGQGIYAYVTLTRG-TEETEELRQELRQWVRKEIGAL 590
|
Shewanella baltica (strain OS155 / ATCC BAA-1091) (taxid: 325240) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A4Y7Y7|ACSA_SHEPC Acetyl-coenzyme A synthetase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 145/594 (24%), Positives = 250/594 (42%), Gaps = 53/594 (8%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAEC 178
++ + ++ +PE +W K I + P + +T H + W LN +
Sbjct: 24 YKTMYQESIVNPEGFWREHGKRIDWI---KPYTKIKKTSFDDHNLSINWFYDGTLNASAN 80
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
CL H + + VAI+W D E +TY EL V ANAL + +GD +
Sbjct: 81 CL--DRHLSEHSDRVAIIWEGDNASEQ--RKITYGELHADVCKFANALRSQGVRRGDIVT 136
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I MPM A + LA G V + F+ IA+R+ K+K + T D +RGGR
Sbjct: 137 IYMPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKVVITSDEGMRGGRAI 196
Query: 298 PLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + A + K IVL G + + +D+ W L + H +P
Sbjct: 197 PLKRNIDDALNHPDVTSVEKVIVLKRTGGKIDW-VEGRDVWWHSLLETASEHCQPEEMG- 254
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWV 409
+ + +L++SG+TG PK + T + + ++ D K G+VY ++GW+
Sbjct: 255 ----AEDPLFLLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKAGEVYWCTADVGWI 310
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTN 463
G +++ NGAT+ +++G P S G+ + V +L T P+L++A
Sbjct: 311 TGHSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVNILYTAPTLIRALMAEGKQ 370
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQP 521
+ D + +R S GE ++ + W WY+ +I E C + G +L
Sbjct: 371 HFDQFDGSTLRIMGSVGEP--INPEAW----RWYHEVIGHEHCPIVDTWWQTETGGILIT 424
Query: 522 QAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADH 574
GA T +A ++D G + G + L + G R + DH
Sbjct: 425 PLPGATDTKPGSATRPFFGVQPALVDNMGNILEGENE--GNLVLLDSWPGQM-RTVYGDH 481
Query: 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQA 634
E ++GM GD +R GY + GR DD +N+ G + + E+E
Sbjct: 482 ERFVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVESAL--V 537
Query: 635 DESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 688
++ AA+ P + + +V L +G T + ++L+ + ++ ++ L
Sbjct: 538 SHELVAEAAVVGYPHDIKGQGIYAYVTLTRG-TEESEELRQELRQWVRKEIGAL 590
|
Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) (taxid: 319224) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 693 | ||||||
| 225435726 | 727 | PREDICTED: acetyl-coenzyme A synthetase | 0.997 | 0.950 | 0.751 | 0.0 | |
| 380042388 | 727 | acyl-activating enzyme 14 [Cannabis sati | 0.991 | 0.944 | 0.755 | 0.0 | |
| 380042368 | 723 | acyl-activating enzyme 4, partial [Canna | 0.989 | 0.948 | 0.730 | 0.0 | |
| 380042386 | 715 | acyl-activating enzyme 13 [Cannabis sati | 0.975 | 0.945 | 0.722 | 0.0 | |
| 449503439 | 725 | PREDICTED: probable acyl-activating enzy | 0.994 | 0.950 | 0.694 | 0.0 | |
| 449503441 | 725 | PREDICTED: probable acyl-activating enzy | 0.994 | 0.950 | 0.687 | 0.0 | |
| 449448834 | 725 | PREDICTED: probable acyl-activating enzy | 0.994 | 0.950 | 0.694 | 0.0 | |
| 449448832 | 725 | PREDICTED: probable acyl-activating enzy | 0.994 | 0.950 | 0.685 | 0.0 | |
| 297746452 | 685 | unnamed protein product [Vitis vinifera] | 0.936 | 0.947 | 0.698 | 0.0 | |
| 145336784 | 727 | acyl-activating enzyme 18 [Arabidopsis t | 0.992 | 0.946 | 0.694 | 0.0 |
| >gi|225435726|ref|XP_002285701.1| PREDICTED: acetyl-coenzyme A synthetase [Vitis vinifera] gi|297746451|emb|CBI16507.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1108 bits (2866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/691 (75%), Positives = 603/691 (87%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MG + EVGV +L+K GL +EEA+EF++ILK + ++G D E+WRE+VAR+VL P HP
Sbjct: 1 MGMRVAEVGVGELVKAGLSMEEAQEFERILKAAVGGARGSDPSEVWREVVARRVLSPSHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
HGLH+LV++SVY +WD SI+GPPLYWFPSL +S TNLG +E +GP+LLG +YKDPITS
Sbjct: 61 HGLHRLVFHSVYAEWDESIRGPPLYWFPSLYESMHTNLGRLMETYGPRLLGLSYKDPITS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
+ LFQKF+V++ E YW + LKE+SV+F AP+CILD TDKSKHGGTWLPG+VLNIAECCL
Sbjct: 121 YSLFQKFSVQNLEVYWSMVLKELSVLFHRAPRCILDTTDKSKHGGTWLPGAVLNIAECCL 180
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
LP ++ RK DN++A+VWR++ D+S VN +T KELREQVM+VAN LD FSKGDAIAIDM
Sbjct: 181 LPVSYPRKHDNSLAVVWRDEGNDDSPVNRLTLKELREQVMMVANVLDATFSKGDAIAIDM 240
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAI+LAG+VVVSIADSFAA+EIATRL VSKAKGIFTQDFI+RGGRKFPLY
Sbjct: 241 PMTVHAVIIYLAIVLAGFVVVSIADSFAAKEIATRLHVSKAKGIFTQDFIVRGGRKFPLY 300
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ AAP K IVLPAIG DV + LREQDLSWKDFLS D+ PRPN YSPVY P+DAV N
Sbjct: 301 SRVVEAAPHKVIVLPAIGTDVDVQLREQDLSWKDFLSHADHLPRPNNYSPVYQPIDAVTN 360
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTG+PKAIPWTQ+S IR +A+ WA I+++VGDV+CWPTNLGWVMGP IL++SFL
Sbjct: 361 ILFSSGTTGDPKAIPWTQVSPIRSSADAWAQINIQVGDVFCWPTNLGWVMGPTILYASFL 420
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GA LALY GSPL+R FGKFVQDAGVTVLGTVPSLVK W+NT C+EGLDWTKI+SFASTG
Sbjct: 421 TGAALALYHGSPLDRGFGKFVQDAGVTVLGTVPSLVKTWKNTGCMEGLDWTKIKSFASTG 480
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+A+Y IIE CGGTEL+S+YIQGS+LQPQAFG FSTA MT G VILD
Sbjct: 481 ETSNVDDDLWLSSRAYYKPIIECCGGTELASSYIQGSVLQPQAFGTFSTAAMTTGFVILD 540
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E GVPYPDDQPCVGEVGLFPL +GA+D LLNADHEEVYF+GMPMYKGM LRRHGDIIKRT
Sbjct: 541 ENGVPYPDDQPCVGEVGLFPLIMGATDWLLNADHEEVYFKGMPMYKGMHLRRHGDIIKRT 600
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
VGGY +VQGRADDTMNLGGIKTSSVEIERVCD+ADES+LE+AAIS +P GGPE+LV+FV
Sbjct: 601 VGGYFVVQGRADDTMNLGGIKTSSVEIERVCDKADESVLESAAISTAPLNGGPELLVVFV 660
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 691
VLKKG+ +P++LKM FSKAIQ LNPLFKV
Sbjct: 661 VLKKGYDCEPNELKMKFSKAIQRNLNPLFKV 691
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042388|gb|AFD33358.1| acyl-activating enzyme 14 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 1094 bits (2830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/690 (75%), Positives = 594/690 (86%), Gaps = 3/690 (0%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K+I EVGVEDL++ GL EEA F ++LK +SC+KG D E+WR LVAR+VLKPWHPHG
Sbjct: 4 KSISEVGVEDLVQAGLTTEEATGFQRVLKDSLSCTKGSDPSEVWRHLVARRVLKPWHPHG 63
Query: 63 LHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFR 122
LHQLVYYSVY WD S KGPP YWFPSL +SK TN+G +E HG LLG YKDPITS+
Sbjct: 64 LHQLVYYSVYAHWDVSSKGPPPYWFPSLYESKHTNMGGIMEKHGSSLLGPLYKDPITSYS 123
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTD-KSKHGGTWLPGSVLNIAECCLL 181
LFQKF+ +HPEAYW I LKE+SV F+E PKCILDR+D KSKHGG+WLPGSVLNIAECCLL
Sbjct: 124 LFQKFSAQHPEAYWSIVLKELSVSFQEEPKCILDRSDLKSKHGGSWLPGSVLNIAECCLL 183
Query: 182 PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMP 241
P+ + RK+D+++AIVWR++ CD+S +N++T K+LREQV+ VA ALD MFSKGDAIAIDMP
Sbjct: 184 PTAYPRKDDDSLAIVWRDEGCDDSGINIITLKQLREQVISVAKALDAMFSKGDAIAIDMP 243
Query: 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS 301
MT AVIIYLAIIL+G VVVSIADSFA +EI+ RLRVS+AK IFTQDFILRG RKFPLYS
Sbjct: 244 MTANAVIIYLAIILSGLVVVSIADSFAPKEISIRLRVSQAKAIFTQDFILRGSRKFPLYS 303
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI 361
+V+ AAP K IVLPAIG++VGI LREQD+SW DFLSSV R YSP Y PVD ++NI
Sbjct: 304 RVVEAAPDKVIVLPAIGSNVGIQLREQDMSWGDFLSSVG--TRSRNYSPCYQPVDTLINI 361
Query: 362 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421
LFSSGTTGEPKAIPWTQLS IRC AE WAH+D++VGDV+CWPTNLGWVMGP+++FSSFL+
Sbjct: 362 LFSSGTTGEPKAIPWTQLSPIRCAAESWAHMDMQVGDVFCWPTNLGWVMGPILIFSSFLS 421
Query: 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481
GATLALY GSPL FGKFVQDAGVT LGTVPSLVKAW+NT C+ GLDWTKI+ FASTGE
Sbjct: 422 GATLALYHGSPLGYGFGKFVQDAGVTKLGTVPSLVKAWKNTQCMNGLDWTKIKCFASTGE 481
Query: 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE 541
TSNVDDDLWLSS+A+Y +IE CGGTELSS+YIQGSLLQPQAFGAFST +MT LVILDE
Sbjct: 482 TSNVDDDLWLSSRAYYKPVIECCGGTELSSSYIQGSLLQPQAFGAFSTTSMTTSLVILDE 541
Query: 542 CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV 601
G P+PDDQ C+GEVGLFPLYLGA+DRLLNADHEEVYF+GMP+YKGM LRRHGDIIKRTV
Sbjct: 542 HGNPFPDDQACIGEVGLFPLYLGATDRLLNADHEEVYFKGMPLYKGMRLRRHGDIIKRTV 601
Query: 602 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV 661
GGY IVQGRADDTMNLGGIKTSSVEIERVCD+ADESI+ETAA+SVSP GGPE LV+FVV
Sbjct: 602 GGYFIVQGRADDTMNLGGIKTSSVEIERVCDRADESIVETAAVSVSPVDGGPEQLVMFVV 661
Query: 662 LKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 691
LK G+ S+ + L+ FSKAIQS LNPLFKV
Sbjct: 662 LKNGYNSEAENLRTKFSKAIQSNLNPLFKV 691
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042368|gb|AFD33348.1| acyl-activating enzyme 4, partial [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 1051 bits (2717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/690 (73%), Positives = 578/690 (83%), Gaps = 4/690 (0%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
+I EVGVEDL++ GL EEA F ++LK +SC+KG D E+WR LVAR+ LKPWHPHG
Sbjct: 1 NSISEVGVEDLVQAGLTTEEATGFQRVLKDSLSCTKGSDPSEVWRHLVARRALKPWHPHG 60
Query: 63 LHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFR 122
LHQLVYYSVY WD S KGPP YWFPSL +SK TN+G +E HG LLG YKDPITS+
Sbjct: 61 LHQLVYYSVYAHWDVSSKGPPPYWFPSLYESKHTNMGGIMEKHGSSLLGPLYKDPITSYS 120
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTD-KSKHGGTWLPGSVLNIAECCLL 181
LFQKF+ +HPEAYW I LKE+SV F+E PKCILDR+D KSKHGG+WLPGSVLN+AECCLL
Sbjct: 121 LFQKFSAQHPEAYWSIVLKELSVSFQEEPKCILDRSDLKSKHGGSWLPGSVLNVAECCLL 180
Query: 182 PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMP 241
P+ + RK+D+++AIVWR++ CD+S +N++T K+LREQV+ VA ALD MFSKGDAIAIDMP
Sbjct: 181 PTAYPRKDDDSLAIVWRDEGCDDSGINIITLKQLREQVISVAKALDAMFSKGDAIAIDMP 240
Query: 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS 301
MT AVIIYLAIIL+G VVVSIADSFA +EI+ RLRVS+AK IFTQDFILRG RKFPLYS
Sbjct: 241 MTANAVIIYLAIILSGLVVVSIADSFAPKEISIRLRVSQAKAIFTQDFILRGSRKFPLYS 300
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI 361
+V+ AAP K IVLPAIG++VGI LREQD+SW DFLSSV R YSP Y PVD ++NI
Sbjct: 301 RVVEAAPDKVIVLPAIGSNVGIQLREQDMSWGDFLSSVG--TRSRNYSPCYQPVDTLINI 358
Query: 362 LFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421
LFSSGTTGEPKAIPWTQLS IRC AE WAH+D++VGDV+CWPTNLGWVMGP+++FSSFL+
Sbjct: 359 LFSSGTTGEPKAIPWTQLSPIRCAAESWAHMDMQVGDVFCWPTNLGWVMGPILIFSSFLS 418
Query: 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481
GATLALY GSPL FGKFVQDAGVT LGTVPSLVKAW+NT C+ GLDWTKI+ FASTGE
Sbjct: 419 GATLALYHGSPLGYGFGKFVQDAGVTKLGTVPSLVKAWKNTQCMNGLDWTKIKCFASTGE 478
Query: 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE 541
TSNVDDDLWLSS+A+Y +IE CGGTELSS+YIQGSLLQPQAFGAFST +MT LVILDE
Sbjct: 479 TSNVDDDLWLSSRAYYKPVIECCGGTELSSSYIQGSLLQPQAFGAFSTTSMTTSLVILDE 538
Query: 542 CGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV 601
G P+PDDQ C+GEVGLFPLYLGA+DRLLNADHEEVYF+ Y C +RTV
Sbjct: 539 HGNPFPDDQACIGEVGLFPLYLGATDRLLNADHEEVYFKEC-HYTKECASETWRYYQRTV 597
Query: 602 GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV 661
GGY IVQGRADDTMNLGGIKTSSVEIERVCD+ADESI+ETAA+SVSP GGPE LV+FVV
Sbjct: 598 GGYFIVQGRADDTMNLGGIKTSSVEIERVCDRADESIVETAAVSVSPVDGGPEQLVMFVV 657
Query: 662 LKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 691
LK G+ S+ + L+ FSKAIQS LNPLFKV
Sbjct: 658 LKNGYNSEAENLRTKFSKAIQSNLNPLFKV 687
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042386|gb|AFD33357.1| acyl-activating enzyme 13 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 1040 bits (2688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/689 (72%), Positives = 578/689 (83%), Gaps = 13/689 (1%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K+I EVGV+DL++ GL EEA F ++LK +SC+KG D E+WR LVAR+VLKPW
Sbjct: 4 KSISEVGVDDLVQAGLTTEEATGFQRVLKDSLSCTKGSDPSEVWRHLVARRVLKPW---- 59
Query: 63 LHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFR 122
SVY WD S KGPP YWFPSL SK TNLG +E HGP LLG YKDPITS+
Sbjct: 60 -------SVYAHWDVSSKGPPPYWFPSLYHSKDTNLGRLMEKHGPSLLGPLYKDPITSYS 112
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLP 182
LFQKF+VEHPE YW IALKE+SV F+E PKCILD++DKSKHGG+WLPG+VLNIAECCLLP
Sbjct: 113 LFQKFSVEHPEVYWSIALKELSVSFQEEPKCILDKSDKSKHGGSWLPGAVLNIAECCLLP 172
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPM 242
+++ RK+D+++AIVWR++ D+S+VNL+T K+LREQV+ VA +LD MFSKGDAIA+DMPM
Sbjct: 173 TSYPRKDDDSLAIVWRDEGSDDSSVNLITLKQLREQVISVAKSLDAMFSKGDAIAMDMPM 232
Query: 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK 302
T AVIIYLAIIL+G VVVSIADSFA +EIA+RL VS+AK IFTQDFILRGGRKFPLYS+
Sbjct: 233 TANAVIIYLAIILSGLVVVSIADSFAPKEIASRLHVSQAKAIFTQDFILRGGRKFPLYSR 292
Query: 303 VLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
V+ AAP + IVLPA G+++GI LREQD+SW DFLSSV R YSP Y PVD+++NIL
Sbjct: 293 VVEAAPDRVIVLPATGSNIGIQLREQDMSWGDFLSSVGTRSRK--YSPCYQPVDSLINIL 350
Query: 363 FSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422
FSSGTTGEPKAIPWT LS IRC+++ WA++D+KVGDV CWPTNLGW +GP ILF+ FL+G
Sbjct: 351 FSSGTTGEPKAIPWTHLSPIRCSSDFWAYMDIKVGDVVCWPTNLGWALGPFILFTCFLSG 410
Query: 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGET 482
A LALY GSPL R FGKFVQDA VT LGTVPSLVK W+NT C++GLDWTKI+SFASTGET
Sbjct: 411 AVLALYHGSPLGRGFGKFVQDASVTKLGTVPSLVKTWKNTQCMKGLDWTKIKSFASTGET 470
Query: 483 SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC 542
SNVDDDLWLSS+A+Y +IE CGGTEL+S+YIQGSLLQPQAFGAF+TATMT VI+DE
Sbjct: 471 SNVDDDLWLSSQAYYKPVIECCGGTELASSYIQGSLLQPQAFGAFNTATMTTSFVIIDEH 530
Query: 543 GVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG 602
G PYPDDQ C GEVGL PLYLGASDRLLNADHEEVYF+GMP+YKGM LRRHGDII RTVG
Sbjct: 531 GNPYPDDQACTGEVGLIPLYLGASDRLLNADHEEVYFKGMPLYKGMRLRRHGDIINRTVG 590
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 662
GY IVQGRADDTMNLGGIKTSS EIE VCD+AD+SILETAA+SVSP GGGPE LV+FVVL
Sbjct: 591 GYFIVQGRADDTMNLGGIKTSSFEIEHVCDRADDSILETAAVSVSPIGGGPEQLVMFVVL 650
Query: 663 KKGFTSQPDKLKMIFSKAIQSKLNPLFKV 691
K G+ ++ + L+ FSKAIQS LNPLFKV
Sbjct: 651 KNGYDAEAENLRTKFSKAIQSNLNPLFKV 679
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449503439|ref|XP_004162003.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1021 bits (2640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/691 (69%), Positives = 572/691 (82%), Gaps = 2/691 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK++ E+ +EDL+K GL L EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSVWELDIEDLVKTGLNLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH L+YYSVY +W+ S GPP YWFPS++QSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHHLLYYSVYANWNISSNGPPPYWFPSINQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQK + + PE YW I L E+SV F++ P+CILDRT+KS WLP S+LNIAECCL
Sbjct: 121 FSLFQKLSYQSPEIYWSIVLHELSVTFQKPPRCILDRTEKSN--VRWLPDSILNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
LPS+ K+DN+ AIVWR + CD S VN MT K+LRE+V LVANALD FSKGDAIAIDM
Sbjct: 179 LPSSRPLKDDNSSAIVWRNEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDAIAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RLR+SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLRISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++FLS+ PR N YSPVY+ D V N
Sbjct: 299 SRVIQGGSCKAIVIPATGNRLDVDLREQDLSWEEFLSTAKEFPRSNRYSPVYHSSDGVTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQLS IRC A+ WAH+D++ GDV+CWPTNLGWVMGPV ++SS L
Sbjct: 359 ILFSSGTTGEPKAIPWTQLSPIRCAADSWAHMDVQPGDVFCWPTNLGWVMGPVSVYSSLL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 AGATLALYHGSPLGHGFGKFVQDAGVTLLGTVPSLVKTWKDTRCMEGLNWTKIRHFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y I E CGGTEL+S+YI G+ LQPQAFGAF+TA+MT VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPIFEFCGGTELASSYINGTPLQPQAFGAFTTASMTTEFVILD 538
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E G+PYP+DQPC+GE+GLFP+YLGAS+ LLNADH++VYF+GMP+Y GM LRRHGDIIKRT
Sbjct: 539 EHGIPYPEDQPCIGEIGLFPIYLGASNELLNADHDKVYFKGMPIYNGMQLRRHGDIIKRT 598
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
VGGY +VQGRADDTMNLGGIKTSSVEIER+CD DESILETAA+S+SP GGPE LVI V
Sbjct: 599 VGGYFVVQGRADDTMNLGGIKTSSVEIERICDHVDESILETAAVSLSPIEGGPEQLVILV 658
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 691
VL+K + P +LK+ FSKAIQ LNPLFKV
Sbjct: 659 VLRKEYERSPQELKVKFSKAIQKNLNPLFKV 689
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449503441|ref|XP_004162004.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1020 bits (2638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/691 (68%), Positives = 579/691 (83%), Gaps = 2/691 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK+I E+G+EDL+K GLKL EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSIWELGIEDLVKTGLKLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH+L+YYSVY +W+ S GPP YWFPS+DQSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHRLLYYSVYANWNISSNGPPPYWFPSIDQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQKF++++PE YW I L+E+S+ F++AP+CILDRT+K G WLP S+LNIAECCL
Sbjct: 121 FSLFQKFSIQNPEIYWSIVLQELSITFQKAPRCILDRTEKPN--GRWLPDSMLNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
S+ ++DN++AIVWR++ CD S VN MT K+LRE+V LVANALD FSKGD +AIDM
Sbjct: 179 RSSSRLLRDDNSLAIVWRDEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDVVAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RL +SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLLISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++F+S+ PR N YSP+Y+ +DA+ N
Sbjct: 299 SRVIEGGSCKAIVIPASGNRLEVDLREQDLSWEEFISTAKEFPRSNCYSPMYHSIDAMTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQ S IRC A+ WAH+D++ GDV+CWPTNLGW MGPV ++S+FL
Sbjct: 359 ILFSSGTTGEPKAIPWTQRSPIRCAADSWAHMDVQPGDVFCWPTNLGWAMGPVSVYSAFL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 TGATLALYHGSPLGYGFGKFVQDAGVTMLGTVPSLVKTWKDTRCMEGLNWTKIRYFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y + E CGGTEL S++I GS +QPQAFGAFSTA+MT G VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPLFECCGGTELGSSFIVGSPVQPQAFGAFSTASMTTGFVILD 538
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E G+P PDDQPC+GE+GLFP YLGAS LLNADH+EVYF+GMP+Y GM LRRHGDIIKRT
Sbjct: 539 EHGIPSPDDQPCIGEIGLFPTYLGASSELLNADHDEVYFKGMPIYNGMQLRRHGDIIKRT 598
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
VGGY++VQGRADDTMNLGGIKTSSVE+ER+CD DES+LETAA++VSP GGPE LVI V
Sbjct: 599 VGGYLVVQGRADDTMNLGGIKTSSVELERICDHVDESLLETAAVAVSPIQGGPEQLVILV 658
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 691
VL++G+ P +LK+ FSKAIQS LNPLFKV
Sbjct: 659 VLREGYKKSPQELKIKFSKAIQSNLNPLFKV 689
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448834|ref|XP_004142170.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1020 bits (2637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/691 (69%), Positives = 573/691 (82%), Gaps = 2/691 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK++ E+ +EDL+K GL L EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSVWELDIEDLVKTGLNLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH+L+YYSVY +W+ S GPP YWFPS+DQSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHRLLYYSVYANWNISSNGPPPYWFPSIDQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQK + + PE YW I L E+SV F++ P+CILDRT+KS WLP S+LNIAECCL
Sbjct: 121 FSLFQKLSYQSPEIYWSIVLHELSVTFQKPPRCILDRTEKSNV--RWLPDSILNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
LPS+ K+DN+ AIVWR + CD S VN MT K+LRE+V LVANALD FSKGDAIAIDM
Sbjct: 179 LPSSRPLKDDNSSAIVWRNEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDAIAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RLR+SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLRISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++FLS+ PR N YSPVY+ D V N
Sbjct: 299 SRVIQGGSCKAIVIPATGNRLDVDLREQDLSWEEFLSTAKEFPRSNRYSPVYHSSDGVTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQ S IRC A+ WAH+D++ GDV+CWPTNLGWVMGPV ++SS L
Sbjct: 359 ILFSSGTTGEPKAIPWTQRSPIRCAADSWAHMDVQPGDVFCWPTNLGWVMGPVSVYSSLL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 AGATLALYHGSPLGYGFGKFVQDAGVTLLGTVPSLVKTWKDTRCMEGLNWTKIRHFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y I E CGGTEL+S+YI G+ LQPQAFGAF+TA+MT VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPIFEFCGGTELASSYINGTPLQPQAFGAFTTASMTTEFVILD 538
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E G+PYP+DQPC+GE+GLFP+YLGAS+ LLNADH++VYF+GMP+Y GM LRRHGDIIKRT
Sbjct: 539 EHGIPYPEDQPCIGEIGLFPIYLGASNELLNADHDKVYFKGMPIYNGMQLRRHGDIIKRT 598
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
VGGY++VQGRADDTMNLGGIKTSSVEIER+CD DESILETAA+S+SP GGPE LVI V
Sbjct: 599 VGGYLVVQGRADDTMNLGGIKTSSVEIERICDHVDESILETAAVSLSPIEGGPEQLVILV 658
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 691
VL+K + P +LK+ FSKAIQ LNPLFKV
Sbjct: 659 VLRKEYERSPQELKVKFSKAIQKNLNPLFKV 689
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448832|ref|XP_004142169.1| PREDICTED: probable acyl-activating enzyme 18, peroxisomal-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1019 bits (2634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/691 (68%), Positives = 578/691 (83%), Gaps = 2/691 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MGK+I E+G+EDL+K GL L EA EF++IL+ V+S ++ E+WREL+AR+ LKP HP
Sbjct: 1 MGKSIWELGIEDLVKTGLNLHEAVEFNRILQNVLSTAQRSKPTEVWRELMARRALKPTHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
+ LH+L+YYSVY +W+ S GPP YWFPS+DQSKLTNLG +E+HGPKLLG +YKDPI+S
Sbjct: 61 YELHRLLYYSVYANWNISSNGPPPYWFPSIDQSKLTNLGKIMELHGPKLLGASYKDPISS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LFQKF++++PE YW I L+E+S+ F++AP+CILDRT+K G WLP S+LNIAECCL
Sbjct: 121 FSLFQKFSIQNPEIYWSIVLQELSITFQKAPRCILDRTEKPN--GRWLPDSMLNIAECCL 178
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
S+ ++DN++AIVWR++ CD S VN MT K+LRE+V LVANALD FSKGD +AIDM
Sbjct: 179 RSSSRLLRDDNSLAIVWRDEGCDNSNVNHMTLKQLREKVTLVANALDATFSKGDVVAIDM 238
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
P+TV AV+IYLAI+LAG VVVSIADSFAA E+A RL +SKAKGIFTQDFILRGG+K+PLY
Sbjct: 239 PLTVDAVVIYLAIVLAGLVVVSIADSFAANEVAVRLLISKAKGIFTQDFILRGGKKYPLY 298
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ KAIV+PA GN + + LREQDLSW++F+S+ PR N YSP+Y+ +DA+ N
Sbjct: 299 SRVIEGGSCKAIVIPASGNRLEVDLREQDLSWEEFISTAKEFPRSNCYSPMYHSIDAMTN 358
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTGEPKAIPWTQ S IRC A+ WAH+D++ GDV+CWPTNLGW MGPV ++S+FL
Sbjct: 359 ILFSSGTTGEPKAIPWTQRSPIRCAADSWAHMDVQPGDVFCWPTNLGWAMGPVSVYSAFL 418
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GATLALY GSPL FGKFVQDAGVT+LGTVPSLVK W++T C+EGL+WTKIR FASTG
Sbjct: 419 TGATLALYHGSPLGYGFGKFVQDAGVTMLGTVPSLVKTWKDTRCMEGLNWTKIRYFASTG 478
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+++Y + E CGGTEL S++I GS +QPQAFGAFSTA+MT G VILD
Sbjct: 479 ETSNVDDDLWLSSRSYYKPLFECCGGTELGSSFIVGSPVQPQAFGAFSTASMTTGFVILD 538
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E G+P PDDQPC+GE+GLFP YLGAS LLNADH+EVYF+GMP+Y GM LRRHGDIIKRT
Sbjct: 539 EHGIPSPDDQPCIGEIGLFPTYLGASSELLNADHDEVYFKGMPIYNGMQLRRHGDIIKRT 598
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
VGGY++VQGRADDTMNLGGIKTSSVE+ER+CD DES+LETAA++VSP GGPE LVI V
Sbjct: 599 VGGYLVVQGRADDTMNLGGIKTSSVELERICDHVDESLLETAAVAVSPIQGGPEQLVILV 658
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 691
VL++G+ P +LK+ FSKAIQS LNPLFKV
Sbjct: 659 VLREGYKKSPQELKIKFSKAIQSNLNPLFKV 689
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297746452|emb|CBI16508.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1009 bits (2610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/691 (69%), Positives = 560/691 (81%), Gaps = 42/691 (6%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
MG + EVGV +L+K GL +EEA+EF +ILK + ++G D E+W E+VAR+VL P HP
Sbjct: 1 MGMRVAEVGVGELVKAGLSMEEAQEFKRILKAAVGGARGSDPSEVWCEVVARRVLSPSHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
HGLHQLV++SVY +WD S +GPPLYWFPSL +SK TNLG +E +GP+LLG +YKDPITS
Sbjct: 61 HGLHQLVFHSVYAEWDESTRGPPLYWFPSLYESKHTNLGRLMETYGPRLLGLSYKDPITS 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
LFQKF+V++PE YW + LKE+S
Sbjct: 121 HSLFQKFSVQNPEVYWSMVLKELS------------------------------------ 144
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
+K DN++A+VWR+ D+S VN MT KELREQVMLVANALD F+KGDAIAIDM
Sbjct: 145 ------KKHDNSLAVVWRDKGNDDSPVNQMTLKELREQVMLVANALDATFTKGDAIAIDM 198
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAI+LAG+VVVSIADSFAA+EI TRLRVSKAKGIFTQDFI+R GRKFPLY
Sbjct: 199 PMTVYAVIIYLAIVLAGFVVVSIADSFAAKEITTRLRVSKAKGIFTQDFIVRRGRKFPLY 258
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
S+V+ AAP K I+LPAIG DV + LREQDLSWKDFLS D+ PRPNYYSPVY P+DAV N
Sbjct: 259 SRVVEAAPHKVILLPAIGKDVNVQLREQDLSWKDFLSRADHLPRPNYYSPVYQPIDAVTN 318
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
ILFSSGTTG+PKAIPWTQ+S IR A+ WA +++VGDV CWPTNLGW+MGP I+++SFL
Sbjct: 319 ILFSSGTTGDPKAIPWTQVSPIRSAADAWAQSNIQVGDVLCWPTNLGWMMGPFIIYASFL 378
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
GA LALY GSPL+R FGKFVQDAGVT+LGTVPSLVK W+NT C+EGLDWTKI+SFASTG
Sbjct: 379 TGAALALYHGSPLDRGFGKFVQDAGVTILGTVPSLVKTWKNTGCMEGLDWTKIKSFASTG 438
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 540
ETSNVDDDLWLSS+A Y IIE CGGTEL+S+YIQGS+ QPQAFGAFS+ MT G VILD
Sbjct: 439 ETSNVDDDLWLSSRAHYKPIIECCGGTELASSYIQGSMFQPQAFGAFSSTAMTTGFVILD 498
Query: 541 ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600
E GVPYPDDQPCVGEVGLFPL +GA+DRLLNADHEEVYF+GMP+YKGM LR+HGDIIKRT
Sbjct: 499 ENGVPYPDDQPCVGEVGLFPLIMGATDRLLNADHEEVYFKGMPIYKGMHLRKHGDIIKRT 558
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
VGGY +VQGRADDTMNLGGIKTSSVEIERVCD+ADESILE+AAIS +P GGPE+LV+FV
Sbjct: 559 VGGYFVVQGRADDTMNLGGIKTSSVEIERVCDKADESILESAAISTAPLNGGPEMLVVFV 618
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 691
VLKKG+ +PD+LKM FSKAIQ LNPLFKV
Sbjct: 619 VLKKGYNCEPDELKMKFSKAIQRNLNPLFKV 649
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145336784|ref|NP_175929.3| acyl-activating enzyme 18 [Arabidopsis thaliana] gi|75297963|sp|Q84P17.1|AEE18_ARATH RecName: Full=Probable acyl-activating enzyme 18, peroxisomal gi|29893268|gb|AAP03028.1| acyl-activating enzyme 18 [Arabidopsis thaliana] gi|332195104|gb|AEE33225.1| acyl-activating enzyme 18 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1009 bits (2608), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/693 (69%), Positives = 571/693 (82%), Gaps = 5/693 (0%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
M K+I E+ +D +K GL LE+A+EFDK++ VI+ + D R+ W+ LV VLKPWHP
Sbjct: 1 MWKSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
H LHQL+YYSVY++WD+S+ GPPLYWFPSL QSK TNLG +E HGP+LLG +YK+P+ S
Sbjct: 61 HPLHQLLYYSVYSNWDSSVHGPPLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLES 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LF++F+VEHPE YW + E+S+VF P+CIL+ KSK GTWLP +VLNIAECCL
Sbjct: 121 FELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCILN---KSKPEGTWLPDAVLNIAECCL 177
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
+PS+H +KED++VA+VWR + D+S VN MT KELREQVMLVANA+ F KGD IAIDM
Sbjct: 178 MPSSHPKKEDDSVAVVWRNEGFDDSPVNRMTIKELREQVMLVANAISGSFEKGDTIAIDM 237
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAIILAG +VVSIADSFAA+EIATRL++SKAKGIFTQD+ILRGGR+FPLY
Sbjct: 238 PMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGGRRFPLY 297
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-PNYYSPVYNPVDAVV 359
S+V+ AAP K IVLPA G ++ + LREQD+SW DFLS+ H NYY P+Y PV++V+
Sbjct: 298 SRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYLPVESVI 357
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQLS IR +GWAH+D++VG YCWPTNLGWVMGP ++FS F
Sbjct: 358 NILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPTLMFSCF 417
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L GATLALY GSPL R FGKFVQDAGVTVLGTVPSLVK W+ TNC+EGL+WTKI+ FA+T
Sbjct: 418 LTGATLALYSGSPLGRGFGKFVQDAGVTVLGTVPSLVKTWKRTNCMEGLNWTKIKFFATT 477
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SNVDD LWLSSKA Y +IE CGGTEL+S+YI GS LQPQAFGAFST +MT ++I
Sbjct: 478 GEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMTTRIIIF 537
Query: 540 DECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
DE GVPYPDDQPC GEVGLFP +LGA+DRLLNA+H+EVYF+GMPMYK LRRHGDI+KR
Sbjct: 538 DENGVPYPDDQPCTGEVGLFPQHLGATDRLLNANHDEVYFKGMPMYKETRLRRHGDIVKR 597
Query: 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659
TVGGY VQGRADDTMNLGGIKTSS+EIERVCDQADE I ETAA++++P GGPE+LVIF
Sbjct: 598 TVGGYYNVQGRADDTMNLGGIKTSSIEIERVCDQADECISETAAVTLTPPNGGPELLVIF 657
Query: 660 VVLKKGFTSQP-DKLKMIFSKAIQSKLNPLFKV 691
VLK+GF Q ++LKM FS+ IQ LNPLFKV
Sbjct: 658 AVLKEGFKQQSGEELKMKFSRTIQKDLNPLFKV 690
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 693 | ||||||
| TAIR|locus:2035721 | 727 | AAE18 "acyl-activating enzyme | 0.992 | 0.946 | 0.694 | 6.1e-268 | |
| TAIR|locus:2178277 | 721 | AAE17 "acyl-activating enzyme | 0.976 | 0.938 | 0.506 | 1e-178 | |
| TIGR_CMR|BA_2553 | 646 | BA_2553 "acetoacetyl-CoA synth | 0.808 | 0.866 | 0.276 | 1e-43 | |
| DICTYBASE|DDB_G0277815 | 674 | acsA "acetyl-CoA synthetase" [ | 0.809 | 0.832 | 0.253 | 2.3e-34 | |
| TIGR_CMR|CPS_3955 | 648 | CPS_3955 "acetyl-CoA synthetas | 0.806 | 0.862 | 0.252 | 3.7e-32 | |
| TIGR_CMR|SO_2743 | 650 | SO_2743 "acetyl-coenzyme A syn | 0.776 | 0.827 | 0.25 | 3.7e-32 | |
| UNIPROTKB|P27550 | 652 | acs [Escherichia coli K-12 (ta | 0.724 | 0.769 | 0.263 | 3e-31 | |
| MGI|MGI:1915988 | 682 | Acss1 "acyl-CoA synthetase sho | 0.743 | 0.755 | 0.262 | 6.1e-31 | |
| UNIPROTKB|F1SAS2 | 672 | ACSS1 "Uncharacterized protein | 0.799 | 0.824 | 0.264 | 1.2e-30 | |
| ZFIN|ZDB-GENE-050320-139 | 693 | acss1 "acyl-CoA synthetase sho | 0.787 | 0.787 | 0.255 | 1.8e-30 |
| TAIR|locus:2035721 AAE18 "acyl-activating enzyme 18" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2577 (912.2 bits), Expect = 6.1e-268, P = 6.1e-268
Identities = 481/693 (69%), Positives = 571/693 (82%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
M K+I E+ +D +K GL LE+A+EFDK++ VI+ + D R+ W+ LV VLKPWHP
Sbjct: 1 MWKSIGELSCDDYVKAGLTLEDAKEFDKLVSDVITKAIETDPRDQWKALVDESVLKPWHP 60
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
H LHQL+YYSVY++WD+S+ GPPLYWFPSL QSK TNLG +E HGP+LLG +YK+P+ S
Sbjct: 61 HPLHQLLYYSVYSNWDSSVHGPPLYWFPSLSQSKSTNLGKLMEYHGPRLLGPSYKNPLES 120
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F LF++F+VEHPE YW + E+S+VF P+CIL+ KSK GTWLP +VLNIAECCL
Sbjct: 121 FELFRRFSVEHPEVYWSFVIDELSLVFHTPPRCILN---KSKPEGTWLPDAVLNIAECCL 177
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
+PS+H +KED++VA+VWR + D+S VN MT KELREQVMLVANA+ F KGD IAIDM
Sbjct: 178 MPSSHPKKEDDSVAVVWRNEGFDDSPVNRMTIKELREQVMLVANAISGSFEKGDTIAIDM 237
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLY 300
PMTV AVIIYLAIILAG +VVSIADSFAA+EIATRL++SKAKGIFTQD+ILRGGR+FPLY
Sbjct: 238 PMTVDAVIIYLAIILAGCIVVSIADSFAAKEIATRLKISKAKGIFTQDYILRGGRRFPLY 297
Query: 301 SKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR-PNYYSPVYNPVDAVV 359
S+V+ AAP K IVLPA G ++ + LREQD+SW DFLS+ H NYY P+Y PV++V+
Sbjct: 298 SRVVEAAPSKVIVLPASGTELHVQLREQDVSWMDFLSNAKPHSSGENYYRPIYLPVESVI 357
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQLS IR +GWAH+D++VG YCWPTNLGWVMGP ++FS F
Sbjct: 358 NILFSSGTTGEPKAIPWTQLSPIRSACDGWAHLDVQVGHTYCWPTNLGWVMGPTLMFSCF 417
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L GATLALY GSPL R FGKFVQDAGVTVLGTVPSLVK W+ TNC+EGL+WTKI+ FA+T
Sbjct: 418 LTGATLALYSGSPLGRGFGKFVQDAGVTVLGTVPSLVKTWKRTNCMEGLNWTKIKFFATT 477
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE SNVDD LWLSSKA Y +IE CGGTEL+S+YI GS LQPQAFGAFST +MT ++I
Sbjct: 478 GEASNVDDVLWLSSKADYKPVIECCGGTELASSYIIGSPLQPQAFGAFSTPSMTTRIIIF 537
Query: 540 DECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
DE GVPYPDDQPC GEVGLFP +LGA+DRLLNA+H+EVYF+GMPMYK LRRHGDI+KR
Sbjct: 538 DENGVPYPDDQPCTGEVGLFPQHLGATDRLLNANHDEVYFKGMPMYKETRLRRHGDIVKR 597
Query: 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659
TVGGY VQGRADDTMNLGGIKTSS+EIERVCDQADE I ETAA++++P GGPE+LVIF
Sbjct: 598 TVGGYYNVQGRADDTMNLGGIKTSSIEIERVCDQADECISETAAVTLTPPNGGPELLVIF 657
Query: 660 VVLKKGFTSQP-DKLKMIFSKAIQSKLNPLFKV 691
VLK+GF Q ++LKM FS+ IQ LNPLFKV
Sbjct: 658 AVLKEGFKQQSGEELKMKFSRTIQKDLNPLFKV 690
|
|
| TAIR|locus:2178277 AAE17 "acyl-activating enzyme 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1735 (615.8 bits), Expect = 1.0e-178, P = 1.0e-178
Identities = 352/695 (50%), Positives = 460/695 (66%)
Query: 3 KNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHG 62
K++ + D+ +G+ + +E+ + L+ +I S E W + ++R++L P P
Sbjct: 4 KSLNSITKSDIEALGISGDVSEKLLRDLEDIIHGSS--TPPETWIQ-ISRRILHPNLPFS 60
Query: 63 LHQLVYYSVYNDWDASIKGPPL-YWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSF 121
HQ++YY Y D+ GP L W P + LTN+G LE G + LG YK+P++SF
Sbjct: 61 FHQMMYYGCYKDF-----GPDLPAWIPDPKVASLTNVGKLLEKRGKEFLGGNYKNPVSSF 115
Query: 122 RLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDR-TDKSKHGGTWLPGSVLNIAECCL 180
FQ+F+V +PE YW+ L E++++F PKCIL++ T GG WLPG+ LN A CL
Sbjct: 116 SSFQEFSVSNPEVYWKTVLDELNILFSVPPKCILEKDTSGDNPGGKWLPGAYLNPARNCL 175
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
RR +D + I WR++ D+ VN MT ELR QV L A+AL + + AIA+D
Sbjct: 176 TNGFKRRLDD--IVIRWRDEGSDDLPVNTMTLLELRSQVWLAAHALSALGLEEESAIAVD 233
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM V +VIIYLAI+LAG+VVVSIADSF+ REI+TRL++SKAK IFTQD I+RG + PL
Sbjct: 234 MPMNVESVIIYLAIVLAGHVVVSIADSFSPREISTRLKISKAKAIFTQDVIIRGDKSIPL 293
Query: 300 YSKVLGA-APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV 358
Y +V+ A APL AIV+PA G+ + LRE+DLSW +FL + + R Y P A
Sbjct: 294 YRRVVDAEAPL-AIVVPARGSSCRMKLREKDLSWNNFLGNAR-NLRGVEYVAAEKPAGAY 351
Query: 359 VNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418
NILFSSGTTGEPKAIPWT +S ++ A+ W H+D++ GDV WPTNLGW+MGP ++++S
Sbjct: 352 TNILFSSGTTGEPKAIPWTNISPLKSAADAWCHLDVQRGDVVAWPTNLGWMMGPWLVYAS 411
Query: 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
+NGA + LY GSPL +F KFVQDA V+VLG +PS+V+ W+N+N G DW++IR F S
Sbjct: 412 LINGACMGLYNGSPLGPTFAKFVQDAEVSVLGVIPSIVRTWQNSNSTSGYDWSRIRCFGS 471
Query: 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVI 538
TGE SN+D+ LWL +A Y +IE CGGTE+ ++I GSLLQPQ+ AFSTA M L I
Sbjct: 472 TGEASNIDEYLWLMGRAHYKPVIEYCGGTEIGGSFISGSLLQPQSLAAFSTAAMGCKLFI 531
Query: 539 LDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIK 598
LDE P P VGE+ L P GAS LLN +H +VYF+GMP ++G LRRHGD+ +
Sbjct: 532 LDEDSNPIPPYAAGVGELALCPHMFGASSTLLNGNHFKVYFQGMPTFQGQILRRHGDLFE 591
Query: 599 RTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658
RT GY GRADDTMNLGGIK S+EIERVC+ D+S+LETAAI V P GGPE LVI
Sbjct: 592 RTSKGYYRAHGRADDTMNLGGIKVGSIEIERVCNSVDDSVLETAAIGVPPPSGGPEQLVI 651
Query: 659 FVVLKKGFTSQPDK--LKMIFSKAIQSKLNPLFKV 691
VV K S PD LK F+ IQ KLNPLFKV
Sbjct: 652 AVVFKSPEFSNPDLNLLKKSFNSEIQKKLNPLFKV 686
|
|
| TIGR_CMR|BA_2553 BA_2553 "acetoacetyl-CoA synthase, putative" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 168/608 (27%), Positives = 276/608 (45%)
Query: 86 WFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISV 145
WFP+ + + T L + K LG Y+D + F ++E +W A K +
Sbjct: 6 WFPTEEYKEKTRLYGWM-----KSLG--YED----YETFYNKSIEETAWFWGEAEKVVGY 54
Query: 146 VFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDES 205
+ + +LD + + W G N+ E L + +D T + +
Sbjct: 55 QWMKPYTEVLDLQNGTPFA-QWYNGGTCNVVESVL---SRWLADDETRTQPALQYEGENG 110
Query: 206 AVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264
TY+EL V AN L KGD + I MPM V+ LA++ G ++ I
Sbjct: 111 TSKSFTYEELDSWVSRAANGLKHAGIEKGDRVTIYMPMIPETVVAMLAVMKIGAIISPIF 170
Query: 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PL--KAIVLPAIGN 319
FA+ + TR++ + +K I T D R G+ L +V A P K +++ GN
Sbjct: 171 SGFASDAVMTRVQAAGSKMIITADGFSRRGKIVSLKDEVDKACEHCPTVEKVVIVRHAGN 230
Query: 320 DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQL 379
D P D SW S+++ +P ++ + D ++ ++++SGTTG+PK T
Sbjct: 231 DF-TP-HNYDFSW----STLEKE-KPFVHAEEMHSDDPLM-LIYTSGTTGKPKGTVHTHA 282
Query: 380 S-SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP----LE 434
++ + +++K GD W T++GW+MGP +LF S +NGAT+ +Y+G P +
Sbjct: 283 GFPLKAAFDAGFGMNIKQGDRVLWVTDMGWMMGPFLLFGSLINGATMVMYEGVPDFPKAD 342
Query: 435 RSFGKFVQDAGVTVLGTVPSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLS 492
R + + V +T LG P+L++A + + + FASTGE N D +WL
Sbjct: 343 RLW-ETVDKYEITHLGISPTLIRALMAKGDEYVNKHSLKSLEVFASTGEPWNPDPWMWLF 401
Query: 493 SKAWYN--AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQ 550
+ I GGTE+S L++P A +F+ + V+LD+ G P D+
Sbjct: 402 ETVGKSNVPICNYSGGTEISGGIFGNVLIKPIAPISFNASLPGMAAVVLDDQGNPIRDE- 460
Query: 551 PCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGR 610
VGE+ L ++G + D E ++ + HGD + YII GR
Sbjct: 461 --VGELCLEKPWVGMTKSFWE-DDERYVNTYWSRFENKWV--HGDWVVYDGEQYIIT-GR 514
Query: 611 ADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP 670
+DDT+N+ G + E E + + ++ ++E AAI V G EV FVVL+ T
Sbjct: 515 SDDTLNIAGKRIGPAEYESILVKHND-VIEAAAIGVPDDVKG-EVCHCFVVLRDNVTFTG 572
Query: 671 DKLKMIFS 678
+ K + S
Sbjct: 573 ELKKELMS 580
|
|
| DICTYBASE|DDB_G0277815 acsA "acetyl-CoA synthetase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 2.3e-34, P = 2.3e-34
Identities = 154/608 (25%), Positives = 264/608 (43%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT 166
P + + + + K ++E P +W+ KE F + + K +
Sbjct: 21 PSFSTKCHISSVEQYNEMYKESIESPNQFWDKKAKEFLTWFSDYTT--VQHGSFEKGDIS 78
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W +N++ C+ H ++ + VAI++ D +E+ V +TY+E+ E+V ++N L
Sbjct: 79 WFLNGKINVSYNCI--DRHLKENADKVAILFEGD--EETMVKKVTYREMFEEVCRLSNLL 134
Query: 227 DTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
++ KGD +AI +P T A+ LA G + I F I +R+ +K + I
Sbjct: 135 ISLGVGKGDTVAIYLPNTPTAIYSMLACARIGAIHSVIFAGFGYESIVSRVHDAKCRVII 194
Query: 286 TQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLS---WKDFLSSVDY 341
T D LRGGR PL K+ K + + + G P + S W D + +D+
Sbjct: 195 TADEGLRGGRYIPLKEKIDQVVQHCKLVQHVLVFKNTGRPTITFNPSIDIWADE-AMLDH 253
Query: 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVY 400
P Y PV+ + + IL++SG+TG PK + TQ + A ++ D DVY
Sbjct: 254 RP---YCPPVWLDSEDPLFILYTSGSTGTPKGLVHTQAGYLLYAAMTHRYVFDYHDSDVY 310
Query: 401 CWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLV 456
++GW+ G I++ NGAT +++G+PL + + + VQ +T T P+ +
Sbjct: 311 ACMADVGWITGHSYIVYGPLANGATTFIFEGTPLYPTPARYWEMVQRHKITQFYTAPTAI 370
Query: 457 KAWRN--TNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSA 512
++ + + D + +R S GE N + W ++ AI+++ TE
Sbjct: 371 RSLMKFPISFTQQSDKSSLRVLGSVGEPINPEAWRWFNTNVGEGRCAIVDTYWQTESG-- 428
Query: 513 YIQGSLLQPQAFGAFSTATMTA-----G--LVILD-ECGVP-Y--PDDQPCVGEVGLFPL 561
G L+ P G ST +A G L +LD + G Y PD C G+ +
Sbjct: 429 ---GHLITPLP-GVTSTKPGSATKPFFGIELQVLDSKTGERLYINPDINGCKEISGVLAI 484
Query: 562 YLG--ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
R + H M YKG GD +K GY ++GR DD +N+ G
Sbjct: 485 SKPWPGIARSVYRSHGRYLQTYMTQYKGHYFT--GDGVKLDSDGYYWIEGRVDDVINVSG 542
Query: 620 IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK 679
+ + E+E SI AA+ P + ++ F LK+G+ + M+ K
Sbjct: 543 HRLGTAELESALVGC--SICAEAAVVGYPHDIKGQGILAFCTLKEGYQEDESNVIMMLKK 600
Query: 680 AIQSKLNP 687
+++ + P
Sbjct: 601 EVRNVIGP 608
|
|
| TIGR_CMR|CPS_3955 CPS_3955 "acetyl-CoA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 379 (138.5 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 152/602 (25%), Positives = 248/602 (41%)
Query: 108 KLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTW 167
K + D T +++K ++E P+ +W KE ++ P + + D W
Sbjct: 13 KAKAHTHIDAATYDAMYKK-SIEQPDEFWGEQAKEFIDWYK--PWDSVSKVDLKNSEINW 69
Query: 168 LPGSVLNIAECCLLPSNHRRKEDNTVAIVWR-EDRCDESAVNLMTYKELREQVMLVANAL 226
G LN++ C+ H + N AI++ +D D+S V TY+EL + V AN L
Sbjct: 70 FSGGKLNVSYNCI--DRHLATKANDTAIIFEGDDPNDDSKV---TYQELHDHVCRFANLL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
+ KGD + I MPM LA G + + F+ I R+ + K +
Sbjct: 125 KERGVKKGDRVCIYMPMIPEVGYAMLACARIGAIHSVVFGGFSTESIKARVLDADCKVVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345
T D LRGG++ PL S V A I P + + + + D++W D + ++Y
Sbjct: 185 TADQSLRGGKRIPLKSNVDAAV----IDCPNVHSVIVVARTGGDVAWNDKVD-INYEEAV 239
Query: 346 NYYSPVYNP--VDAV--VNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVY 400
S + P +DA + +L++SG+TG PK + T I A ++ D K G+VY
Sbjct: 240 AKQSAICEPEVMDAEDPLFVLYTSGSTGTPKGVVHTCGGYILYAAMTHKYVFDYKEGEVY 299
Query: 401 CWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQDAG---VTVLGTVPSLV 456
+ GW+ G I + NGAT +++G P G+F Q V V T P+ +
Sbjct: 300 WCTADAGWITGHSYIFYGPLANGATTLVFEGVPTYPDAGRFWQVCEKHKVNVFYTAPTAI 359
Query: 457 KAWRNT--NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSA 512
+A + + + D + +R + GE N + W WY ++ +C +
Sbjct: 360 RALMSIGDDLVNQADLSSLRLLGTVGEPIN--PEAW----HWYYEVVGKSNCPIVDTWWQ 413
Query: 513 YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV-GE-VGLFPLYLGASDRL- 569
G +L GA AG + D + GE GL + +L
Sbjct: 414 TETGGILITSLPGAVDMKPGCAGKPFFGVQPALFDKDGNTLEGENAGLLVMTASWPGQLR 473
Query: 570 -LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 628
+ DH Y + Y G GD KR GY + GR DD +N+ G + + EIE
Sbjct: 474 TVYGDHNRFYQTYLGQYPGNYFT--GDGAKRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 531
Query: 629 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 688
++ E A + G V +V L G ++ D+L + + + +L
Sbjct: 532 SAL-VLHPAVAEAAVVGYPHEIKGQGVYC-YVTLM-GNATESDELNVELREFVAKELGRF 588
Query: 689 FK 690
K
Sbjct: 589 AK 590
|
|
| TIGR_CMR|SO_2743 SO_2743 "acetyl-coenzyme A synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 379 (138.5 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 148/592 (25%), Positives = 253/592 (42%)
Query: 123 LFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT--WLPGSVLNIAECCL 180
++Q+ ++ +PE +W K I + P + +T H + W LN + CL
Sbjct: 27 MYQE-SIVNPEGFWREHGKRIDWI---KPYTKIKKTTFDDHNLSINWFYDGTLNASANCL 82
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
H + VAI+W D +E +TY EL QV ANAL + +GD + I
Sbjct: 83 --DRHLAAHSDRVAIIWEGDNANEQ--RKITYGELHTQVCKFANALRSQGVRRGDIVTIY 138
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM A + LA G V + F+ IA+R+ K+K + T D +RGGR PL
Sbjct: 139 MPMVPEAAVAMLACARIGAVHSVVFGGFSPDSIASRVIDGKSKIVITSDEGMRGGRAIPL 198
Query: 300 YSKVLGAA--P-----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352
+ A P K IVL G + + +D+ W + + H
Sbjct: 199 KRNIDDALKHPDVTSVEKVIVLKRTGGKIDW-VEGRDVWWHSLVETASEHCAVEEMG-AE 256
Query: 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG 411
+P+ +L++SG+TG PK + T + + ++ D K G++Y ++GW+ G
Sbjct: 257 DPLF----LLYTSGSTGNPKGVLHTTGGYMVYASMTHEYVFDYKPGEIYWCTADVGWITG 312
Query: 412 -PVILFSSFLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAW--RNTNCL 465
+++ NGAT+ +++G P S G+ + V +L T P+L++A
Sbjct: 313 HSYMVYGPLANGATVLIHEGVPNHPSPARLGEMIDRHKVNILYTAPTLIRALMAEGKQHF 372
Query: 466 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII--ESCGGTELSSAYIQGSLLQPQA 523
+ + + +R S GE N + W WY+ +I E C + G +L
Sbjct: 373 DKYNGSSLRIMGSVGEPIN--PEAW----RWYHEVIGHEHCPIVDTWWQTETGGILITPL 426
Query: 524 FGAFSTATMTA-----GL--VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEE 576
GA T +A G+ ++D G + G + L + G R + DHE
Sbjct: 427 PGATDTKPGSATRPFFGVQPALVDNMGNIL--EGATEGNLVLLDSWPGQM-RTVYGDHER 483
Query: 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADE 636
++GM GD +R GY + GR DD +N+ G + + E+E + E
Sbjct: 484 FVLTYFKTFRGMYFT--GDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVESAL-VSHE 540
Query: 637 SILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 688
+ E A + P + + +V L +G T + ++L+ + ++ ++ L
Sbjct: 541 LVAEAAVVGY-PHDIKGQGIYAYVTLTRG-TEESEELRQELRQWVRKEIGAL 590
|
|
| UNIPROTKB|P27550 acs [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 3.0e-31, P = 3.0e-31
Identities = 143/542 (26%), Positives = 224/542 (41%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W LN+A CL H ++ + AI+W D D S ++YKEL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DASQSKHISYKELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
+ KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LELGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVLGAA--PL-----KAIVLPAIGNDVGIPLREQDLSWKDFLSS 338
T D +R GR PL V A P +VL G + +DL W D +
Sbjct: 185 TSDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQ-EGRDLWWHDLVEQ 243
Query: 339 V-DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKV 396
D H N D + IL++SG+TG+PK + T + A + ++ D
Sbjct: 244 ASDQHQAEEM-----NAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHP 297
Query: 397 GDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSP---LERSFGKFVQDAGVTVLGTV 452
GD+Y ++GWV G +L+ GAT +++G P + V V +L T
Sbjct: 298 GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTA 357
Query: 453 PSLVKAW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA--IIESCGGTE 508
P+ ++A +EG D + +R S GE N + W K ++++ TE
Sbjct: 358 PTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTE 417
Query: 509 LSSAYIQGSLLQPQAFGAFSTATMTAGL--VILDECGVPYPDDQPCVGEVGLFPLYLGAS 566
+ ++ L A S G+ ++D G P + G + + + G +
Sbjct: 418 -TGGFMITPLPGATELKAGSATRPFFGVQPALVDNEGNPL--EGATEGSLVITDSWPGQA 474
Query: 567 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE 626
R L DHE +K M GD +R GY + GR DD +N+ G + + E
Sbjct: 475 -RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAE 531
Query: 627 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN 686
IE A I E A + + P + + +V L G P+ + ++ ++
Sbjct: 532 IESAL-VAHPKIAEAAVVGI-PHNIKGQAIYAYVTLNHGEEPSPELYAEV-RNWVRKEIG 588
Query: 687 PL 688
PL
Sbjct: 589 PL 590
|
|
| MGI|MGI:1915988 Acss1 "acyl-CoA synthetase short-chain family member 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 369 (135.0 bits), Expect = 6.1e-31, P = 6.1e-31
Identities = 148/564 (26%), Positives = 248/564 (43%)
Query: 130 EHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189
+ P A+W ++ ++V+ + D ++ G W G LN++ CL H +K
Sbjct: 60 QEPAAFWGPLARD-TLVWDTPYHTVWDCDFRTGKIG-WFLGGQLNVSVNCL--DQHVQKS 115
Query: 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVI 248
T+A++W D + V + TY+EL E +AN L +GD +AI MP++ AV
Sbjct: 116 PETIALIWERDE-PGTEVRI-TYRELLETTCRLANTLKRHGVHRGDRVAIYMPVSPLAVA 173
Query: 249 IYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA- 307
LA G + + F+A +A R+ +K K + T + LRGGR L K++ A
Sbjct: 174 AMLACARIGAIHTVVFAGFSAESLAGRINDAKCKAVITFNQGLRGGRVVEL-KKIVDEAV 232
Query: 308 ---PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFS 364
P VL A D +P+ D+ + ++ P +P + ++ +L++
Sbjct: 233 KSCPTVQHVLVAHRTDTKVPMGSLDIPLEQEMAK----EAP-VCTPESMSSEDMLFMLYT 287
Query: 365 SGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNG 422
SG+TG PK + TQ + A + D + GDV+ ++GW+ G +++ NG
Sbjct: 288 SGSTGTPKGLVHTQAGYLLYAAMTHKLVFDYQPGDVFGCVADIGWITGHSYVVYGPLCNG 347
Query: 423 ATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKIRSFA 477
AT L++ +P+ G++ VQ + P+ V+ ++ D + +R+
Sbjct: 348 ATTVLFESTPVYPDAGRYWETVQRLKINQFYGAPTAVRLLLKYGDAWVKKYDRSSLRTLG 407
Query: 478 STGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA- 534
S GE N + WL ++++ TE I +P GA M
Sbjct: 408 SVGEPINHEAWEWLHKVVGDGRCTLVDTWWQTETGGICIAP---RPSEDGAEILPGMAMR 464
Query: 535 ---GLV--ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHE---EVYFRGMPMYK 586
G+V ++DE G + G + + + G + R + DH+ + YFR P Y
Sbjct: 465 PFFGIVPVLMDEKGNVL-EGGDVSGALCISQAWPGMA-RTIYGDHQRFVDAYFRAYPGYY 522
Query: 587 GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADE-SILETAAIS 645
GD RT GGY + GR DD +N+ G + + EIE AD ++ ETA I
Sbjct: 523 FT-----GDGAHRTEGGYYQITGRMDDVINISGHRLGTAEIEDA--MADHPAVPETAVIG 575
Query: 646 VSPAGGGPEVLVIFVVLKKGFTSQ 669
P E F+VLK + +
Sbjct: 576 Y-PHDIKGEAAFAFIVLKDNISDE 598
|
|
| UNIPROTKB|F1SAS2 ACSS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 366 (133.9 bits), Expect = 1.2e-30, P = 1.2e-30
Identities = 159/602 (26%), Positives = 261/602 (43%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGT 166
P+L A P ++ P A+W K++ +V+ + D +S G
Sbjct: 28 PRLWSSAPAAPPGFYQERIALAAREPAAFWGPLAKDV-LVWDTPYHTVSDCDFRSGKIG- 85
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
W G LN++ CL H +K +VA++W D +AV + TY+EL E +AN L
Sbjct: 86 WFLGGQLNVSVNCL--DQHVQKSPESVALIWERDE-PGTAVRI-TYRELLETTCRLANTL 141
Query: 227 DTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
+GD +AI MP++ AV LA G V I F+A +A R+ +K K +
Sbjct: 142 KRHGVCRGDRVAIYMPVSPMAVAAMLACARIGAVHTVIFAGFSAGSLAGRINDAKCKVLI 201
Query: 286 TQDFILRGGRKFPLYSKVLGAAPL-KAI--VLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342
T + LRGGR L V A L +I VL A D +P+ D+ + ++ +
Sbjct: 202 TFNQGLRGGRVVELKRIVDEAVKLCPSIQHVLVAHRTDNKVPMGNLDIPLEQEMAKEE-- 259
Query: 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 401
P +P + + +L++SG+TG+PK + TQ + A + D + GD++
Sbjct: 260 --P-VCAPESMGSEDTLFLLYTSGSTGKPKGLVHTQAGYLLYAALTHRLVFDYRPGDIFG 316
Query: 402 WPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVK 457
++GW+ G +++ NGAT L++ +P+ G++ VQ + P+ +
Sbjct: 317 CMADIGWITGHSYVVYGPLCNGATSVLFESTPVYPDAGRYWETVQRLKINQFYGAPTAFR 376
Query: 458 AWR--NTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAY 513
+ + ++ D + +R+ S GE N + WL ++++ TE
Sbjct: 377 LLLKYSDSWVKKYDRSSLRTLGSVGEPINHEAWEWLHQVVGDGRCTLVDTWWQTETGGIC 436
Query: 514 IQGSLLQPQAFGAFSTATMTA----GLV--ILDECGVPYPDDQPCVGEVGLFPLYLGASD 567
I +P GA M G+V ++DE G + G + L + G +
Sbjct: 437 ISP---RPSEEGANILPCMAMRPLFGIVPVLMDEKGKVL-EGGDVSGALCLSQAWPGMA- 491
Query: 568 RLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624
R + DH+ + YF+ P Y GD RT GY + GR DD +N+ G + +
Sbjct: 492 RTIYGDHQRFIDAYFKAFPGYYFT-----GDGAYRTEEGYYQITGRMDDVINISGHRLGT 546
Query: 625 VEIERVCDQADE-SILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS 683
EIE AD ++ ETA I P E F+VLK G T D + +
Sbjct: 547 AEIEDA--MADHPAVPETAVIGY-PHDIKGEAAFAFIVLKDG-TGDVDVVVKELRSVVAD 602
Query: 684 KL 685
K+
Sbjct: 603 KI 604
|
|
| ZFIN|ZDB-GENE-050320-139 acss1 "acyl-CoA synthetase short-chain family member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 152/595 (25%), Positives = 272/595 (45%)
Query: 89 SLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFR 148
SL +S ++ L H L GR Y D L++ +V+ PE +W KE + +
Sbjct: 40 SLSRSSISAAQLDLSSH---LSGRNYAD------LYE-LSVKDPENFWGSIAKE-RLAWT 88
Query: 149 EAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVN 208
+ + D D S W G LN++ CL H + + VA++W +D +
Sbjct: 89 KPFDQVSD-CDISSGKINWFLGGQLNVSVNCL--DVHVANDPSRVALIWEKD--EPGTEE 143
Query: 209 LMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF 267
+TY+EL E +AN L + +G+ +AI MP++ AV LA G V + F
Sbjct: 144 RITYRELLEMTCRLANTLKSHGVQRGERVAIYMPVSPMAVAAMLACARIGAVHTVVFAGF 203
Query: 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS---KVLGAAPLKAIVLPAIGNDVGIP 324
++ +A R++ ++ K + T + +RGGR F L S K + + P V A + +P
Sbjct: 204 SSEALAGRIQDAQCKFVITCNQGVRGGRVFDLKSTVDKAVKSCPSVRHVFVAKRTNNSVP 263
Query: 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC 384
+ + D+ ++ ++ P P+ + + ++ +L++SG+TG+PK I TQ +
Sbjct: 264 MGKLDIPLEEVMAGQSSECAPE---PMES--EEMLFMLYTSGSTGKPKGIVHTQAGYLLY 318
Query: 385 TAEGWAHI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF-- 440
+ ++ D GDV+ ++GW+ G +++ NGAT L++ +P+ + G++
Sbjct: 319 ASLTHQYVFDYTPGDVFGCVADIGWITGHSYVVYGPLCNGATSVLFESTPVYPNPGRYWE 378
Query: 441 -VQDAGVTVLGTVPSLVKAWRN--TNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497
VQ + P+ ++ + ++ D + +++ AS GE N + W +
Sbjct: 379 TVQRLRINQFYGAPTAIRLLLKYEESWVKKYDRSSLKTLASVGEPINHEAWDWFHNVVGD 438
Query: 498 NA--IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLV--ILDECGVPYPDDQPC 552
++++ TE I +P A + A G+ +L E G +
Sbjct: 439 GRCPLVDTWWQTETGGVCIAPLPAEPGAEIRPAMAMRPFFGIKPELLGEKGQIITGND-V 497
Query: 553 VGEVGLFPLYLGASDRLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQG 609
G + + + G + R + DH+ + YF+ P Y+G GD RT GY + G
Sbjct: 498 NGALCISQPWPGMA-RTIFGDHQRFVDAYFK--P-YQGQYFT--GDGAYRTEDGYYQITG 551
Query: 610 RADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 664
R DD +N+ G + + EIE D+ + + ETA I + G EV FVVLK+
Sbjct: 552 RMDDVINISGHRLGTAEIEDALDEHPD-VPETAVIGIPHEIKG-EVPFAFVVLKE 604
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q84P17 | AEE18_ARATH | 6, ., 2, ., 1, ., - | 0.6940 | 0.9927 | 0.9463 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 693 | |||
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 0.0 | |
| PLN03051 | 499 | PLN03051, PLN03051, acyl-activating enzyme; Provis | 0.0 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 2e-65 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 2e-63 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 1e-57 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 2e-53 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 3e-46 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 2e-44 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 4e-42 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 6e-42 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 2e-37 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 8e-35 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 8e-33 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 8e-29 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 5e-26 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 2e-25 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 4e-20 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 3e-19 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 3e-18 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 5e-18 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 7e-17 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 9e-17 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 2e-16 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 3e-16 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 5e-15 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 1e-14 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 2e-14 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 2e-14 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 3e-14 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 4e-13 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 5e-13 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 6e-13 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 7e-13 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 9e-13 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 7e-12 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 7e-12 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 2e-11 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 2e-11 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 3e-11 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 1e-10 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 3e-10 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 4e-10 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 4e-10 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 5e-10 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 7e-10 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 1e-09 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 2e-09 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 2e-09 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 2e-09 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 1e-08 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 4e-08 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 5e-08 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 6e-08 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 6e-08 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 1e-07 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 2e-07 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 2e-07 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 2e-07 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 3e-07 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 3e-07 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 3e-07 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 5e-07 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 6e-07 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 7e-07 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 7e-07 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-06 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 1e-06 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 1e-06 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 1e-06 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 2e-06 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 2e-06 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 3e-06 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 4e-06 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 7e-06 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 1e-05 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 2e-05 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 2e-05 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 3e-05 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 3e-05 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 3e-05 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 7e-05 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 9e-05 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 1e-04 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 1e-04 | |
| PRK12582 | 624 | PRK12582, PRK12582, acyl-CoA synthetase; Provision | 1e-04 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-04 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 2e-04 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 2e-04 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 3e-04 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 3e-04 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 5e-04 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 5e-04 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 5e-04 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 6e-04 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 7e-04 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 0.001 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 0.001 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 0.001 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 0.001 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 0.001 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 0.002 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 0.002 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 0.002 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 0.002 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 0.002 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 0.003 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 0.003 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 0.003 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 0.004 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 0.004 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 1194 bits (3090), Expect = 0.0
Identities = 429/694 (61%), Positives = 513/694 (73%), Gaps = 7/694 (1%)
Query: 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHP 60
GK++ E+ V DL GL EEAE+F K L+ +++ + G IWR +++ +L P HP
Sbjct: 4 AGKSVDEITVGDLEAAGLSPEEAEKFFKELQVILTRA-GASPPSIWRR-ISQSLLTPSHP 61
Query: 61 HGLHQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITS 120
LHQL+YYS Y +WD+ GPP WFPS + +KLTNLG LE G +LLG YKDPI+S
Sbjct: 62 FALHQLMYYSCYKNWDSDTLGPPPAWFPSPEIAKLTNLGRLLEARGKELLGSKYKDPISS 121
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL 180
F FQ+F+VE+PE YW I L E+S+VF P+CILD +D+S GG WLPG+VLN+AECCL
Sbjct: 122 FSEFQRFSVENPEVYWSIVLDELSLVFSVPPRCILDTSDESNPGGQWLPGAVLNVAECCL 181
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239
P + D+++AI+WR++ D+ VN MT ELR QV VANALD + F KGDAIAID
Sbjct: 182 TPKPSKT--DDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAID 239
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM V AVIIYLAIILAG VVVSIADSFA EIATRL++SKAK IFTQD I+RGG+ PL
Sbjct: 240 MPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPL 299
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
YS+V+ A KAIVLPA G V + LRE D+SW DFL+ + RP+ Y V PV+A
Sbjct: 300 YSRVVEAKAPKAIVLPADGKSVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFT 359
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419
NILFSSGTTGEPKAIPWTQL+ +R A+ WAH+D++ GD+ CWPTNLGW+MGP ++++S
Sbjct: 360 NILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDIVCWPTNLGWMMGPWLVYASL 419
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
LNGATLALY GSPL R F KFVQDA VT+LGTVPS+VK W+NTNC+ GLDW+ IR F ST
Sbjct: 420 LNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGST 479
Query: 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL 539
GE S+VDD LWL S+A Y IIE CGGTEL ++ GSLLQPQAF AFST M L IL
Sbjct: 480 GEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFIL 539
Query: 540 DECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599
D+ G PYPDD PC GE+ LFPL GAS LLNADH +VYF+GMP++ G LRRHGDI +R
Sbjct: 540 DDSGNPYPDDAPCTGELALFPLMFGASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFER 599
Query: 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659
T GGY GRADDTMNLGGIK SSVEIERVC+ ADES+LETAAI V P GGGPE LVI
Sbjct: 600 TSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIA 659
Query: 660 VVLK--KGFTSQPDKLKMIFSKAIQSKLNPLFKV 691
VLK G ++LK IF+ AIQ KLNPLFKV
Sbjct: 660 AVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKV 693
|
Length = 728 |
| >gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 775 bits (2002), Expect = 0.0
Identities = 320/463 (69%), Positives = 373/463 (80%), Gaps = 11/463 (2%)
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPMTV AVIIYLAI+LAG VVVS+ADSF+A+EIATRL +S AKG+FTQD +LRGGR PL
Sbjct: 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPL 60
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL--SSVDYHPRPNYYSPVYNPVDA 357
YSKV+ AAP KAIVLPA G V +PLREQDLSW DFL ++ N YSPVY PV++
Sbjct: 61 YSKVVEAAPAKAIVLPAAGEPVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVES 120
Query: 358 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417
V NILFSSGTTGEPKAIPWT LS +RC ++GWAH+D++ GDV CWPTNLGW+MGP +L+S
Sbjct: 121 VTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPGDVVCWPTNLGWMMGPWLLYS 180
Query: 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRS 475
+FLNGATLALY G+PL R FGKFVQDAGVTVLG VPS+VKAWR+T +EGLDW+K+R
Sbjct: 181 AFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRV 240
Query: 476 FASTGETSNVDDDLWLSS-KAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA 534
FASTGE S VDD LWLSS + +Y +IE CGGTEL+S YI +LLQPQA GAFSTA++
Sbjct: 241 FASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGT 300
Query: 535 GLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMY--KGMCLRR 592
V+L++ GVPYPDDQPCVGEV L P LGASDRLLNADH++VY++GMPMY KGM LRR
Sbjct: 301 RFVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADHDKVYYKGMPMYGSKGMPLRR 360
Query: 593 HGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652
HGDI+KRT GGY VQGRADDTMNLGGIKTSSVEIER CD+A I ETAA+ V+P GG
Sbjct: 361 HGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGG 420
Query: 653 PEVLVIFV---VLKKGFTSQ-PDKLKMIFSKAIQSKLNPLFKV 691
PE+LVIF+ KKGF P+ L+ F +AIQ+ LNPLFKV
Sbjct: 421 PELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKV 463
|
Length = 499 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 224 bits (574), Expect = 2e-65
Identities = 137/548 (25%), Positives = 217/548 (39%), Gaps = 78/548 (14%)
Query: 166 TWLPGSVLNIAECCLLPSNHRRKE---DNTVAIVWREDRCDESAVNLMTYKELREQVMLV 222
W G LN+A L R E + AI++ + +TY +LR +V +
Sbjct: 1 KWFEGGTLNLALNAL----DRHLEADRPDDTAIIFDGEDGLFRE---LTYGDLRREVARL 53
Query: 223 ANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKA 281
ANAL D KGD +AI MP + AVI LA G + ++ +A +A R+
Sbjct: 54 ANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGP 113
Query: 282 KGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341
K + D R G++ L +V L + + +
Sbjct: 114 KVLIADDGTFRNGKEIALLEDADAVLSSVVVV------------PRLGLWYDEAVEKASE 161
Query: 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGD 398
+ P D + +L++SGTTG+PK I + L R TA+ H DL GD
Sbjct: 162 K-----FEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAK--FHGDLLPGD 214
Query: 399 VYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLE--RSFGKFVQDAGVTVLGTVPSL 455
+ ++ GW+ G +FS +GAT LY G P + ++ VT+ GT P+
Sbjct: 215 RFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTF 274
Query: 456 VKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSS 511
++ E D + +R S GE N + W +Y+A I++ G TE
Sbjct: 275 LRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEW-----FYSALGVWILDIYGQTETGM 329
Query: 512 AYIQG--SLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV-------GLFPLY 562
+I G + + + +D+ G P P P VGE+ G+ Y
Sbjct: 330 GFIAGRPPVKNGSSGLPLPGYAV----RRVDDEGNPVP---PGVGELVVRLPWPGMALTY 382
Query: 563 LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT 622
+R A Y GD +R GY + GR+DD + + G +
Sbjct: 383 WNDPERYKEAYFGRWYR-------------TGDWAERDEDGYFWLHGRSDDVIKVSGKRI 429
Query: 623 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ 682
+EIE V A ++ E A + V P G ++++ FVVL G P++L + +
Sbjct: 430 GPLEIESVL-LAHPAVAEAAVVGV-PDPGKGQIVLAFVVLAAGVE--PNELAEEIRRHVA 485
Query: 683 SKLNPLFK 690
+ P
Sbjct: 486 RNIGPHAI 493
|
Length = 528 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 217 bits (556), Expect = 2e-63
Identities = 138/482 (28%), Positives = 207/482 (42%), Gaps = 88/482 (18%)
Query: 203 DESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVV 261
++ +V TY EL +V +A+ L + KGD + I MPM AV+ LAI G + V
Sbjct: 1 EDGSVRTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAV 60
Query: 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDV 321
I F +ATRL+ ++AK + T D LR G++
Sbjct: 61 PIFSGFGPDAVATRLQDAEAKVLITADGFLRRGKR------------------------- 95
Query: 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS 381
+ L++ I+++SGTTG+PK T
Sbjct: 96 -VDLKDDPAM-----------------------------IIYTSGTTGKPKGTVHTHAGF 125
Query: 382 -IRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS---PLERSF 437
++ + DLK GD W T++GW+MGP ++ L GAT+ LY+G+ P
Sbjct: 126 PVKAAKDIGFCFDLKPGDRLLWITDMGWMMGPWLVLGGLLLGATIVLYEGAPDYPDPDRL 185
Query: 438 GKFVQDAGVTVLGTVPSLVKAWR--NTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSK- 494
+ V+ VT LG P+L++A R +EG D + +R STGE + + LWL +
Sbjct: 186 WRIVERHKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFERV 245
Query: 495 -AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV 553
II GGTE+S + ++P +F+ + ++DE G P V
Sbjct: 246 GGGRAPIINYSGGTEISGGILGNVPIRPIKPCSFNGPSPGMDADVVDEDGRPVR---GEV 302
Query: 554 GE-------VGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYII 606
GE G+ + +R + E Y+ P G+ HGD GY
Sbjct: 303 GELVVRAPWPGMTRGFWRDPER-----YLETYWSRFP---GVW--VHGDWALVDEDGYWY 352
Query: 607 VQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKG 665
+ GR+DDT+ + G + EIE V + + E AAI V P G E +V FVVLK G
Sbjct: 353 ILGRSDDTIKVAGKRVGPAEIESVLNSHPA-VAEAAAIGVPDPVKG--EAIVCFVVLKPG 409
Query: 666 FT 667
T
Sbjct: 410 VT 411
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 1e-57
Identities = 160/605 (26%), Positives = 254/605 (41%), Gaps = 76/605 (12%)
Query: 117 PITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIA 176
+ + +++VE A+WE V+ + +LD G W PG+ LN A
Sbjct: 4 SLADYHALWRWSVEDLAAFWESVWDFFDVIGSKGYVVVLDGDIMP--GARWFPGARLNYA 61
Query: 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235
E L R +++ AI + + +++ ELR QV +A AL + GD
Sbjct: 62 ENLL-----RHADNDPAAIYAAGE---DGERREISWAELRSQVARLAAALRDLGVKPGDR 113
Query: 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 295
+A +P AVI LA G + S + F + R + K +F D + G+
Sbjct: 114 VAGYLPNVPEAVIAMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNGK 173
Query: 296 KFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
+ K+ L+A+V+ + P + + S P + +
Sbjct: 174 EHDRREKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDRAAPLEFERL 233
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQ----LSSIRCTAEGWAHIDLKVGDVYCWPTNLG 407
P D + IL+SSGTTG PK I L ++ E H DL+ GD + T G
Sbjct: 234 --PFDHPLWILYSSGTTGLPKCIVHGAGGTLLQHLK---EHGLHCDLRPGDRLFYYTTTG 288
Query: 408 WVMGPVILFSSFLNGATLALYQGSPL---ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC 464
W+M L S L+GATL LY GSPL + G+T+ GT + A
Sbjct: 289 WMMWN-WLVSGLLSGATLVLYDGSPLYPDPDVLWRLAAKLGITIFGTSAKYLDALEKAGI 347
Query: 465 --LEGLDWTKIRSFASTG-----ET-----SNVDDDLWLSSKAWYNAIIESCGGTELSSA 512
D + +R+ STG E S+V D+WL+S + GGT++
Sbjct: 348 EPGRTHDLSSLRTILSTGSPLPPEGFDWVYSHVKSDVWLASIS---------GGTDICGC 398
Query: 513 YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF---------PLY- 562
++ G+ P G + + DE + +P +GEVG PLY
Sbjct: 399 FVGGNPTLPVYRGEIQCRGLGMAVEAFDE------EGKPVIGEVGELVCTKPFPSMPLYF 452
Query: 563 LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT 622
D + + + YF + G+ RHGD IK T G +I+ GR+D T+N GG++
Sbjct: 453 WNDPD---GSRYRDAYFD---TFPGVW--RHGDWIKITPHGGVIIYGRSDATLNPGGVRI 504
Query: 623 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ 682
+ EI RV ++ E + ++ + G E + +FV L++G T +K I AI+
Sbjct: 505 GTAEIYRVVEKIPE-VEDSLVVGQEVDDGD-ERMPLFVKLREGVTLDDALVKRI-RSAIR 561
Query: 683 SKLNP 687
+ L+P
Sbjct: 562 AALSP 566
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 194 bits (495), Expect = 2e-53
Identities = 176/636 (27%), Positives = 258/636 (40%), Gaps = 112/636 (17%)
Query: 81 GPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIAL 140
G PL W PS ++ + + + L + +++VE EA+W+
Sbjct: 2 GDPL-WTPSAERIAASRMTAFIR-----WLAARRGLSFDDYAALWRWSVEDLEAFWQSVW 55
Query: 141 KEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIV-WRE 199
V+ +L + G W PG+ LN AE L R + D+ AI+ E
Sbjct: 56 DFFGVIGSTPYTVVLA--GRRMPGARWFPGARLNYAENLL-----RHRRDDRPAIIFRGE 108
Query: 200 DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGY 258
D +++ ELR QV +A AL + GD +A +P V+ LA G
Sbjct: 109 DGPRRE----LSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGA 164
Query: 259 VVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAP--LKAIV 313
+ S + F + + R + K + D GG+ F +KV A P +V
Sbjct: 165 IWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVV 224
Query: 314 LPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKA 373
+P +G L W+DFL+ + PV P D + IL+SSGTTG PK
Sbjct: 225 VPYLGPAAAAAALPGALLWEDFLA--PAEAAELEFEPV--PFDHPLWILYSSGTTGLPKC 280
Query: 374 IP-------WTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLA 426
I L + H DL GD + W T GW+M L S L GATL
Sbjct: 281 IVHGHGGILLEHLKELGL------HCDLGPGDRFFWYTTCGWMMWN-WLVSGLLVGATLV 333
Query: 427 LYQGSP----LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL-------EGLDWTKIRS 475
LY GSP + + GVTV GT + A C E D + +R+
Sbjct: 334 LYDGSPFYPDPNVLW-DLAAEEGVTVFGTSAKYLDA-----CEKAGLVPGETHDLSALRT 387
Query: 476 FASTGE----------TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFG 525
STG +V D+WL+S I GGT++ S ++ G+ L P G
Sbjct: 388 IGSTGSPLPPEGFDWVYEHVKADVWLAS-------I--SGGTDICSCFVGGNPLLPVYRG 438
Query: 526 AFSTATMTAGLVILDECGVPYPDDQPCVGEVG-L--------FPLYL-----GASDRLLN 571
+ + DE G +P VGEVG L PL G+ R +
Sbjct: 439 EIQCRGLGMAVEAWDEDG------RPVVGEVGELVCTKPFPSMPLGFWNDPDGS--RYRD 490
Query: 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC 631
A YF + G + RHGD I+ T G +++ GR+D T+N GG++ + EI R
Sbjct: 491 A-----YFD---TFPG--VWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQV 540
Query: 632 DQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 667
+ E +L++ I G + +FVVL +G T
Sbjct: 541 EALPE-VLDSLVIGQEWPDGDVRM-PLFVVLAEGVT 574
|
Length = 655 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 3e-46
Identities = 104/434 (23%), Positives = 163/434 (37%), Gaps = 48/434 (11%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY+EL E+ +A AL + GD +AI +P + V+ LA++ AG V + S A
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 329
+A L S+AK + T D L K+L ++L I +
Sbjct: 61 ERLAYILEDSEAKVLITDD---------ELLPKLLEVLLKLLVLLALIIVGDDGEGLDLL 111
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 389
+S + P P D + I+++SGTTG+PK + T + + A
Sbjct: 112 DDELLAGASAEPPAPPV--DP-----DDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLA 164
Query: 390 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTV 448
L GD L + +F L G TL L L+ ++ VTV
Sbjct: 165 ERFGLTPGDRVLLLLPLHFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTV 224
Query: 449 LGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 508
L VP+L++ + D + +R S GE + L + ++ G TE
Sbjct: 225 LYGVPTLLRLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTE 284
Query: 509 LSSAYIQGSLLQPQAFGAFSTATMTAG-------LVILDECGVPYPDDQPCVGEV----- 556
+ G + G + +LDE G P P VGE+
Sbjct: 285 TTVVATA------NLPGDPEVKPGSIGRPLPGVEVKVLDEEGEPVPPG--EVGELCIRGP 336
Query: 557 GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN 616
G+ YL + E + G + R GD+ + GY+ + GR DD +
Sbjct: 337 GVARGYLNDPEL-----TAERFVED-----GWGMYRTGDLGRWDEDGYLEILGRKDDQVK 386
Query: 617 LGGIKTSSVEIERV 630
+ G + EIE V
Sbjct: 387 IRGERIEPGEIEAV 400
|
Length = 412 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 2e-44
Identities = 161/587 (27%), Positives = 245/587 (41%), Gaps = 55/587 (9%)
Query: 124 FQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPS 183
+++V+ + +W+ + V F ++D D++ G W PG+ LN AE
Sbjct: 40 LHRWSVDELDTFWKAVWEWFDVRFSTPCARVVD--DRTMPGAQWFPGARLNYAE------ 91
Query: 184 NHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM 242
N R A+++ D E A +T+ ELR QV +A AL + GD ++ +P
Sbjct: 92 NLLRAAGTEPALLYV-DETHEPAP--VTWAELRRQVASLAAALRALGVRPGDRVSGYLPN 148
Query: 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK 302
+AV+ LA G + S + F AR + R + + K +FT D G++ K
Sbjct: 149 IPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDK 208
Query: 303 VL----GAAPLKAIVL-PAIGNDVGI-PLREQDLSWKDFLSSVDYHPRPNYYSPVYN--P 354
V L+A+V P +G P + L +DF ++ V+ P
Sbjct: 209 VAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAE------LVFEQLP 262
Query: 355 VDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV 413
D + ILFSSGTTG PK I + + ++ E H DL GD + T GW+M
Sbjct: 263 FDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWN- 321
Query: 414 ILFSSFLNGATLALYQGSPL---ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGL 468
L S GATL LY GSP + G T+ GT V A R
Sbjct: 322 WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTH 381
Query: 469 DWTKIRSFASTGETSNVDDDLWL----SSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF 524
D + ++ ASTG D W+ + W +I GGT++ S + + P
Sbjct: 382 DLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASI---SGGTDICSCFAGANPTLPVHI 438
Query: 525 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLN----ADHEEVYFR 580
G + + D G P + VGE+ R N + + + YF
Sbjct: 439 GEIQAPGLGTAVQSWDPEGKPVTGE---VGELVCTNPMPSMPIRFWNDPDGSKYRDAYFD 495
Query: 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 640
P + RHGD I T G I++ GR+D T+N G++ S EI ++ DE + E
Sbjct: 496 TYPG-----VWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDE-VRE 549
Query: 641 TAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 687
+ I GG +V+FV L G T L I + I++ L+P
Sbjct: 550 SLCIGQEQPDGG-YRVVLFVHLAPGATLDDALLDRI-KRTIRAGLSP 594
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 4e-42
Identities = 162/618 (26%), Positives = 266/618 (43%), Gaps = 107/618 (17%)
Query: 118 ITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPK-CILDRTDKSKHGGTWLPGSVLNIA 176
+ ++ + ++E P+ +W +E+ F+ K K W G LN++
Sbjct: 4 LEQYKELYEESIEDPDKFWAKLARELLDWFKPFTKVLDWSFPPFYK----WFVGGELNVS 59
Query: 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235
C+ H + VAI+W D + V +TY+EL +V AN L ++ KGD
Sbjct: 60 YNCV--DRHLEARPDKVAIIWEGD--EPGEVRKITYRELHREVCRFANVLKSLGVKKGDR 115
Query: 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 295
+AI MPM A I LA G + + F+A +A R+ + AK + T D LRGG+
Sbjct: 116 VAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGK 175
Query: 296 KFPLYSKV---LGAAPL---KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 349
PL + V L P+ +V+ GN V + +D+ W D ++ Y
Sbjct: 176 VIPLKAIVDEALEKCPVSVEHVLVVRRTGNPV-PWVEGRDVWWHDLMAKA-----SAYCE 229
Query: 350 PVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHI------DLKVGD 398
P P+D+ + IL++SG+TG+PK + + T G +A + D+K GD
Sbjct: 230 P--EPMDSEDPLFILYTSGSTGKPKGV-------LHTTG-GYLLYAAMTMKYVFDIKDGD 279
Query: 399 VYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVP 453
++ W T ++GW+ G I++ NGAT +++G+P G+F ++ VT+ T P
Sbjct: 280 IF-WCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAP 338
Query: 454 SLVKAWRNTNCLEGLDWTK------IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507
+ ++A G +W K +R S GE N + W+ WY ++ G
Sbjct: 339 TAIRALMR----LGDEWVKKHDLSSLRLLGSVGEPIN--PEAWM----WYYKVV---GKE 385
Query: 508 E--LSSAYIQ---GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGE 555
+ + Q G ++ GA T +A L ++DE G + GE
Sbjct: 386 RCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEG----NPVEGPGE 441
Query: 556 VGLFPLYLGASD------RLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYII 606
G YL R + DHE + YF + G GD +R GYI
Sbjct: 442 GG----YLVIKQPWPGMLRTIYGDHERFVDTYF---SPFPGYYFT--GDGARRDKDGYIW 492
Query: 607 VQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF 666
+ GR DD +N+ G + + EIE + ++ E A + + G + + FV LK G+
Sbjct: 493 ITGRVDDVINVSGHRLGTAEIESAL-VSHPAVAEAAVVGIPDDIKG-QAIYAFVTLKDGY 550
Query: 667 TSQPD---KLKMIFSKAI 681
+ +L+ K I
Sbjct: 551 EPDDELRKELRKHVRKEI 568
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 159 bits (405), Expect = 6e-42
Identities = 114/487 (23%), Positives = 174/487 (35%), Gaps = 67/487 (13%)
Query: 210 MTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY+EL + +A AL + GD +AI +P + +I +LA + AG V V +
Sbjct: 39 LTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLT 98
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+A L + AK + T L V A P+ +VL D +P+ +
Sbjct: 99 PRELAYILNDAGAKVLITSA------EFAALLEAVAEALPVVLVVLLVGDADDRLPITLE 152
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA-- 386
L P P+ + +P D +L++SGTTG PK + T + + A
Sbjct: 153 AL--------AAEGPGPDADARPVDPDDLAF-LLYTSGTTGLPKGVVLTHRNLLANAAGI 203
Query: 387 EGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLE-RSFGKFVQDA 444
L DV L + G V L + L G TL L P + ++
Sbjct: 204 AAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKY 263
Query: 445 GVTVLGTVPSLVKAWRNT-NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503
VTVL VP+ ++ + + + +R S G + + AI+E
Sbjct: 264 KVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEG 323
Query: 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP----------DDQPCV 553
G TE S + L G P P +
Sbjct: 324 YGLTETS--------------PVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP 369
Query: 554 GEVG--------LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 605
GEVG + Y + A E+ + R GD+ GY+
Sbjct: 370 GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRT------------GDLGYVDEDGYL 417
Query: 606 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG 665
+ GR D + GG EIE V + + E A + V G E +V VVLK G
Sbjct: 418 YIVGRLKDLIISGGENIYPEEIEAVLAEHPA-VAEAAVVGVPDERWG-ERVVAVVVLKPG 475
Query: 666 FTSQPDK 672
++
Sbjct: 476 GDAELTA 482
|
Length = 534 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 2e-37
Identities = 173/628 (27%), Positives = 264/628 (42%), Gaps = 135/628 (21%)
Query: 126 KFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCL---LP 182
K ++E PE +W +E+ F+ K +LD + W G LN + CL L
Sbjct: 2 KESIEDPEEFWAEQAEELDW-FKPWDK-VLD--WSNPPFAKWFVGGKLNASYNCLDRHLK 57
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF-SKGDAIAIDMP 241
+ N VAI+W + DES +TY+EL +V AN L ++ KGD +AI MP
Sbjct: 58 AGRG----NKVAIIWEGEPGDESRT--ITYRELYREVCRFANVLKSLGVKKGDRVAIYMP 111
Query: 242 MTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILR 292
M I LA ++ AG F+A +A R+ +K+K + T D R
Sbjct: 112 MIPELPIAMLACARIGAIHSVVFAG---------FSAEALADRINDAKSKLLITADGGYR 162
Query: 293 GGRKFPLYSKV---LGAAPL--KAIVLPAIGNDVGIPLRE-QDLSWKDFLSSVDYHPRPN 346
GG+ PL V L P K IV+ G +V P+ E +D+ W D ++
Sbjct: 163 GGKVIPLKEIVDEALEKCPSVEKVIVVKRTGGEV--PMVEGRDVWWHDLMAKA-----SP 215
Query: 347 YYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAH------IDLK 395
Y P P+DA + IL++SG+TG+PK + T L +A D+
Sbjct: 216 YCEPE--PMDAEDPLFILYTSGSTGKPKGVVHTTGGYLV--------YAATTFKYVFDIH 265
Query: 396 VGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLG 450
DVY W T ++GW+ G I++ NGAT +Y+G+P G++ V+ VT+
Sbjct: 266 PDDVY-WCTADIGWITGHSYIVYGPLANGATTVMYEGAPDYPDPGRWWEIVEKYKVTIFY 324
Query: 451 TVPSLVKAWRNTNCLEGLDWTK------IRSFASTGETSNVDDDLWLSSKAWYNAII--E 502
T P+ ++ G +W K +R S GE N + W+ WY +I E
Sbjct: 325 TAPTAIRMLMR----FGDEWPKKHDLSSLRLLGSVGEPINPE--AWM----WYYEVIGKE 374
Query: 503 SCGGTELSSAYIQ----GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQP 551
C + + Q G ++ P GA +A I+DE G
Sbjct: 375 RC---PIVDTWWQTETGGHMITPLP-GATPLKPGSATRPFPGVEPAIVDEEGNEVEG--- 427
Query: 552 CVGEVGLFPLYLGASD------RLLNADHE---EVYFRGMPMYKGMCLRRHGDIIKRTVG 602
G G YL R + DHE + YF + G GD +R
Sbjct: 428 --GVEG----YLVIKRPWPGMLRTIYGDHERYVKTYFS---KFPGYYFT--GDGARRDED 476
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIER--VCDQADESILETAAISVSPAGGGPEVLVIFV 660
GY + GR DD +N+ G + + E+E V + ++ E A + G E + FV
Sbjct: 477 GYYWILGRVDDVINVSGHRLGTAEVESALV---SHPAVAEAAVVGKPDEVKG-EAIYAFV 532
Query: 661 VLKKGFTSQPDKLKMIFSKAIQSKLNPL 688
LK G D+L+ K ++ ++ P+
Sbjct: 533 TLKDGVEP-SDELRKELKKHVRKEIGPI 559
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 8e-35
Identities = 88/330 (26%), Positives = 131/330 (39%), Gaps = 43/330 (13%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSF 419
IL++SGTTG+PK + + + + I L GDV L V+G L +
Sbjct: 5 ILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGLLGAL 64
Query: 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479
L G T+ LY+G P SF + ++ VTVL VP+L A G D + +R S
Sbjct: 65 LAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSLRLLISG 124
Query: 480 GETSNVDDDLWLSSKAWYNA-----IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA 534
GE L + I+E G TE S + + G T
Sbjct: 125 GEP------LSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPG-------TV 171
Query: 535 GLVILD-ECGVPYPDDQPC-VGEVG--------LFPLYLGASDRLLNADHEEVYFRGMPM 584
G + E V + +P GEVG + Y A E+ ++R
Sbjct: 172 GRPVPGVEVRVVDEEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYR---- 227
Query: 585 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644
GD+ GY+ + GR+ D + +GG E+E V Q ++ E A +
Sbjct: 228 --------TGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQH-PAVAEAAVV 278
Query: 645 SVSPAGGGPEVLVIFVVLKKGFTSQPDKLK 674
V P E +V FVVL+ G + ++LK
Sbjct: 279 GV-PDEDRGERIVAFVVLRPGADALAEELK 307
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 8e-33
Identities = 153/582 (26%), Positives = 250/582 (42%), Gaps = 77/582 (13%)
Query: 130 EHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKE 189
+ PEA+W I + + + +LD ++ W G LN+ + R E
Sbjct: 1 KEPEAFWAEQANLID--WYKPWEKVLDNSNPPFT--RWFVGGRLNLCYNAV----DRHIE 52
Query: 190 D---NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245
D + +A+++ D TY EL ++V +A L + KGD + I MPM
Sbjct: 53 DGRGDQIALIY--DSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPE 110
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG 305
AVI LA G + + FA++E+A+R+ +K K I T F + GR P Y +L
Sbjct: 111 AVIAMLACARIGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVP-YKPLLD 169
Query: 306 AA-------PLKAIVLPAIGNDVGIPLR-EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA 357
A P K ++L V PL+ +DL W + ++ V PV++
Sbjct: 170 KALELSQHKPHKVLILNR--GQVPAPLKPGRDLDWAELMAKARPVD------CV--PVES 219
Query: 358 V--VNILFSSGTTGEPKAIPWTQLSSIR-----CTAEGWA--HI-DLKVGDVYCWPTNLG 407
+ IL++SGTTG+PK + +R A W+ +I +K GDV+ +++G
Sbjct: 220 TDPLYILYTSGTTGKPKGV-------VRDTGGYAVALKWSMRNIYGIKPGDVFWAASDVG 272
Query: 408 WVMG-PVILFSSFLNGATLALYQGSPLER----SFGKFVQDAGVTVLGTVPSLVKAWR-- 460
WV+G I++ L+GAT LY+G P+ ++ + +++ GV L T P+ ++A R
Sbjct: 273 WVVGHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAIRKQ 332
Query: 461 --NTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI---Q 515
+ ++ D + +R+ GE + W+ K +I+ TE
Sbjct: 333 DPDGEYIKKYDLSSLRALFLAGERLDSPTLEWIE-KTLGVPVIDHWWQTETGWPITANCV 391
Query: 516 GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADH 574
G L P G+ + +LDE G +G + + PL G L D
Sbjct: 392 GLELLPIKPGSPGKPVPGYDVQVLDETGEELGPG--ELGNIVIKLPLPPGCLLTLWG-DD 448
Query: 575 E---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC 631
E ++Y P Y GD + GY+ V GR DD +N+ G + S+ E+E
Sbjct: 449 ERFKKLYLNKFPGY-----YDTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESV 503
Query: 632 DQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKL 673
+ E A + V G +V + VVLK D+L
Sbjct: 504 -LKHPDVAECAVVGVRDELKG-QVPLGLVVLKDDCKIDADQL 543
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 8e-29
Identities = 176/637 (27%), Positives = 253/637 (39%), Gaps = 169/637 (26%)
Query: 112 RAYKDPITSFRLFQKFTVEHPEAYW-EIALKEIS------VVFREAPKCILDRTDKSKHG 164
A D L+Q+ +VE PE +W E A K + V I
Sbjct: 11 NALIDMEQYKALYQE-SVEDPEGFWAEQA-KRLDWFKPFDTVLDWNAPFI---------- 58
Query: 165 GTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVAN 224
W LN++ CL H + + VAI+W D +S +TY+EL +V AN
Sbjct: 59 -KWFEDGELNVSYNCL--DRHLKTRGDKVAIIWEGDDPGDSRK--ITYRELHREVCRFAN 113
Query: 225 ALDTM-FSKGDAIAIDMPMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIAT 274
AL ++ KGD +AI MPM A + LA ++ G F+A +A
Sbjct: 114 ALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGG---------FSAEALAD 164
Query: 275 RLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAPL--KAIVLPAIGNDVGIPLRE-Q 328
R+ + AK + T D +RGG+ PL + V L P K IV+ G DV E +
Sbjct: 165 RIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDV--DWVEGR 222
Query: 329 DLSWKDFLSSV-DYHPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCT 385
DL W + ++ D P P+DA + IL++SG+TG+PK + T T
Sbjct: 223 DLWWHELVAGASDECE------PE--PMDAEDPLFILYTSGSTGKPKGVLHT-------T 267
Query: 386 AEG---WAHI------DLKVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQG---S 431
G +A + D K GDVY W T ++GWV G I++ NGAT +++G
Sbjct: 268 G-GYLVYAAMTMKYVFDYKDGDVY-WCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNY 325
Query: 432 PLERSFGKFVQDAGVTVLGTVP----SLVKAWRNTNCLEGLDWTKIRSFAS------TGE 481
P F + + VT+ T P +L+K EG + K +S GE
Sbjct: 326 PDPGRFWEVIDKHKVTIFYTAPTAIRALMK--------EGDEHPKKYDLSSLRLLGSVGE 377
Query: 482 TSNVDDDLWLSSKAWYNAII--ESC-----------GGTELSSAYIQGSLLQPQAFGAFS 528
N + W WY ++ E C GG ++ P GA
Sbjct: 378 PIN--PEAWE----WYYKVVGGERCPIVDTWWQTETGGIMITPL--------P---GATP 420
Query: 529 TATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASD------RLLNADHE 575
+A ++DE G P GE G L D R + DHE
Sbjct: 421 LKPGSATRPLPGIQPAVVDEEGNPLEG-----GEGG----NLVIKDPWPGMMRTIYGDHE 471
Query: 576 ---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER--V 630
+ YF +KGM GD +R GY + GR DD +N+ G + + EIE V
Sbjct: 472 RFVKTYF---STFKGMYFT--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV 526
Query: 631 CDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 667
A + E A + G + + FV LK G
Sbjct: 527 ---AHPKVAEAAVVGRPDDIKG-QGIYAFVTLKGGEE 559
|
Length = 637 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 5e-26
Identities = 144/591 (24%), Positives = 245/591 (41%), Gaps = 57/591 (9%)
Query: 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECC 179
+ F + ++E PEA+W + I ++ P+ ILD + W G N+ C
Sbjct: 2 RYEEFYQRSIEQPEAFWAEQARRID--WQTPPQRILD--YSNPPFARWFAGGRTNL--CH 55
Query: 180 LLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAI 238
H + +A+V + +TY++L +V + A+AL + +GD + I
Sbjct: 56 NALDRHLDERGEQLALVTVSSETGQERT--LTYRQLHREVNVFASALRALGVGRGDRVLI 113
Query: 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFP 298
MPM AV LA G + + FA+ +A R+ + K I + D +RGG+ P
Sbjct: 114 YMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIP 173
Query: 299 LYSKVLGAAPLKAIVLPA--IGNDVGI-PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPV 355
Y +L AA +A P + D G+ P+R + +D VDY + PV
Sbjct: 174 -YKPLLDAAIAEAQHPPPHVLLVDRGLAPMRL--IPGRD----VDYAALRTQHEDAQVPV 226
Query: 356 DAVVN-----ILFSSGTTGEPKAIPW-TQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 409
+ + + IL++SGTTG+PK + ++ WA ++ G V +++GWV
Sbjct: 227 EWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWV 286
Query: 410 MG-PVILFSSFLNGATLALYQGSPLERSFG---KFVQDAGVTVLGTVPSLVKAWR--NTN 463
+G I+++ L GA LY+G P G V+ GV + + P+ ++ + +
Sbjct: 287 VGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAA 346
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELS---SAYIQGSLLQ 520
L D + + GE + W++ +I++ TE A + G L+
Sbjct: 347 WLRKHDLSSLHWLFLAGEPLDEPTAHWITD-GLGKPVIDNYWQTETGWPVLAIMPGLDLK 405
Query: 521 PQAFGAFSTATMTAGLVILDECGVPYPDDQPC-VGEVGLF----PLYLGASDRLLNADHE 575
P G+ L +LDE +PC E G+ PL G + D
Sbjct: 406 PVKLGSPGLPMYGYHLRVLDEA-----TGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDAR 460
Query: 576 EV--YFRGM--PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC 631
+ Y+ P+Y D R GY + GR DD +N+ G + + EIE
Sbjct: 461 FLKTYWSHFKRPLYSSF------DWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESV 514
Query: 632 DQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ 682
+ S+ E A + V G +V V+F +LK+ ++ +
Sbjct: 515 -SSHPSVAEVAVVGVHDELKG-QVAVVFAILKESDSAGDAHDPHAVETGMM 563
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 2e-25
Identities = 151/567 (26%), Positives = 225/567 (39%), Gaps = 105/567 (18%)
Query: 121 FRLFQKFTVEHPEAYWEIALKEISVVF------REAPKCI--LDRTDKSKHGGTWLPGSV 172
+ K +V+ P +W +I+ F C LD K W G
Sbjct: 32 YMEMYKRSVDDPAGFWS----DIASQFYWKQKWEGDEVCSENLDVR-KGPISIEWFKGGK 86
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
NI CL N + +AI W + + +TY EL ++V +AN L +
Sbjct: 87 TNICYNCL-DRNVEAGNGDKIAIYWEGN--EPGFDASLTYSELLDRVCQLANYLKDVGVK 143
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
KGDA+ I +PM + I LA G V + F+A +A R+ K K + T + +
Sbjct: 144 KGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVK 203
Query: 292 RGGRKFPLYSKVLGAAPLKAIVLPAI------GNDVGIPL---------RE-------QD 329
RG K + LK IV A+ G VGI L RE +D
Sbjct: 204 RG-------PKTI---NLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRD 253
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAV-----VNILFSSGTTGEPKAIPWTQLSSIRC 384
+ W+D + PNY P V+ V + +L++SG+TG+PK + T +
Sbjct: 254 VWWQDVV--------PNY--PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVY 303
Query: 385 TAEGWAH-IDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGK--- 439
TA + + D K DVY + GW+ G + + LNGAT+ +++G+P G+
Sbjct: 304 TATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWD 363
Query: 440 FVQDAGVTVLGTVPSLVKAWR--NTNCLEGLDWTKIRSFASTGETSN----------VDD 487
V VT+ T P+LV++ + +R S GE N V D
Sbjct: 364 IVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGD 423
Query: 488 DLWLSSKAWYNAIIESCGG---TELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGV 544
S W+ GG T L A+ PQ G+ + VI+DE G
Sbjct: 424 SRCPISDTWWQT---ETGGFMITPLPGAW-------PQKPGSATFPFFGVQPVIVDEKGK 473
Query: 545 PYPDDQPCVGEVGLFPLYLGASDRLLNADH---EEVYFRGMPMYKGMCLRRHGDIIKRTV 601
+ C G + + + GA R L DH E YF+ Y GD R
Sbjct: 474 EI--EGECSGYLCVKKSWPGAF-RTLYGDHERYETTYFKPFAGY-----YFSGDGCSRDK 525
Query: 602 GGYIIVQGRADDTMNLGGIKTSSVEIE 628
GY + GR DD +N+ G + + E+E
Sbjct: 526 DGYYWLTGRVDDVINVSGHRIGTAEVE 552
|
Length = 666 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 4e-20
Identities = 83/302 (27%), Positives = 121/302 (40%), Gaps = 57/302 (18%)
Query: 168 LPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD 227
LP + A RR D A V+ + R +TY EL +V A AL
Sbjct: 7 LPELLARAA---------RRFGDKE-AYVFGDQR--------LTYAELNARVRRAAAALA 48
Query: 228 TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 286
+ KGD +AI P + VI L + AG VVV + + A E A L AK +F
Sbjct: 49 ALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFV 108
Query: 287 QDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345
L + P L+ +V+ D P E+ ++ DFL++ D P
Sbjct: 109 LGLFL------GVDYSATTRLPALEHVVICETEEDD--PHTEKMKTFTDFLAAGD----P 156
Query: 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGD------ 398
+P +P D V +ILF+SGTTG PK T + A WA L GD
Sbjct: 157 AERAPEVDP-DDVADILFTSGTTGRPKGAMLTHRQLLS-NAADWAEYLGLTEGDRYLAAN 214
Query: 399 ----VYCWPTNLGWVMGPVILFSSFLNGAT-LALYQGSPLERSFGKFVQDAGVTVLGTVP 453
V+ + + + + GAT L L P + F + ++ +TVL P
Sbjct: 215 PFFHVFGY---------KAGVNAPLMRGATILPLPVFDP-DEVF-RLIETERITVLPGPP 263
Query: 454 SL 455
++
Sbjct: 264 TM 265
|
Length = 513 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 3e-19
Identities = 103/487 (21%), Positives = 171/487 (35%), Gaps = 78/487 (16%)
Query: 210 MTYKELREQVMLVANALDTMFS-KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ +L ++ + +A L + +GD +A+ P ++ ++L + AG +V + S+
Sbjct: 11 LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYT 70
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-----KAIVLPAIGNDVGI 323
E+A +L++SK K IF KV AA + IVL + + V
Sbjct: 71 PDELAHQLKISKPKLIFCDP---------DELDKVKEAAKELGPVVRIIVLDSAPDGVLR 121
Query: 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR 383
+D L +P+ + D +L+SSGTTG PK + LS
Sbjct: 122 I--------EDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGV---MLSHKN 170
Query: 384 CTA------EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSF 437
A + DV G +S L GAT+ + E +F
Sbjct: 171 IIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLASLLCGATVIIMPKFDSE-TF 229
Query: 438 GKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497
K ++ VT L VP + A + ++ D + +R S + + L +
Sbjct: 230 LKLIEKYKVTSLFLVPPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPN 289
Query: 498 NAIIESCGGTELSSAYIQGSLLQPQAFGAF-STATMTAGLV--ILDECGVPYPDDQPCVG 554
I + G TE A + L P S + + I+DE G
Sbjct: 290 TTIKQGYGMTETGPA----TTLTPPGDEKPGSVGRLVPNVEAKIVDEDG----GKSLGPN 341
Query: 555 EVGLFPLYLGASDRLLNADHEEVYFRG---MPMY-------KGMCLR----RHGDIIKRT 600
E G E+ +G M Y K GDI
Sbjct: 342 ERG------------------ELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFD 383
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
G + R + + G + E+E V + + + + A I + G E+ +V
Sbjct: 384 EDGNFYIVDRKKELIKYKGYQVPPAELEAVLLEHPK-VADAAVIGIPDEVAG-ELPRAYV 441
Query: 661 VLKKGFT 667
VLK G
Sbjct: 442 VLKPGSK 448
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 3e-18
Identities = 111/495 (22%), Positives = 166/495 (33%), Gaps = 131/495 (26%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL E A L KGD +A+ +P + I Y I+ AG VVV + +
Sbjct: 25 LTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYT 84
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ +L S AK +
Sbjct: 85 PRELEHQLNDSGAKVLIV------------------------------------------ 102
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ--LSSIRCTA 386
+S++D L+S P PV D + + ++ GTTG PK T L +
Sbjct: 103 AISFEDALASGAPLP-----LPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQI 157
Query: 387 EGWAHIDLKVGD----------VYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERS 436
W + D ++ N + GAT L + +
Sbjct: 158 AAWVKDLREGEDRFLTALPLFHIFGLTVN---------MLLGLRLGATNVLVP-NFRPIN 207
Query: 437 FGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW 496
K ++ T+ VP+L A N + D++ +R S G V+ ++ +
Sbjct: 208 VLKEIKRYRFTIFPGVPTLYNALLNHPEFKKYDFSSLRLCISGGAPLPVE-----VAERF 262
Query: 497 ---YNA-IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLV-------ILDECGVP 545
A ++E G TE S L + G + GL I+D+ G
Sbjct: 263 EEKTGAPLVEGYGLTETSPVTTVNPLDGERKPG-------SIGLPLPGTEVKIVDDEGNE 315
Query: 546 YPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG---MPMYKGM------CLR----R 592
P GEVG E+ RG M Y L R
Sbjct: 316 LPP-----GEVG------------------ELVVRGPQVMKGYWNRPEETAEVLTDGWLR 352
Query: 593 HGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652
GDI GY + R D + +GG EIE V + ++LE A + V P
Sbjct: 353 TGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVL-YSHPAVLEAAVVGV-PDPYR 410
Query: 653 PEVLVIFVVLKKGFT 667
E + FVVLK+G +
Sbjct: 411 GEAVKAFVVLKEGAS 425
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 5e-18
Identities = 105/469 (22%), Positives = 147/469 (31%), Gaps = 152/469 (32%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY+EL V +A L + GD + + +P VI+Y A+ G + V +
Sbjct: 41 LTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPAHR 100
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A EI R S+AK D
Sbjct: 101 AHEIGHFARQSEAKAYIIAD---------------------------------------- 120
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 385
+ F DY + + V S GTTG PK IP T L S R +
Sbjct: 121 --RFSGF----DYAA---LARELLEELPDVALFQLSGGTTGLPKLIPRTHNDYLYSARAS 171
Query: 386 AEGWAHIDLKVGDVYCWPTNLG--WVMGPVILFSSFLNGATLALYQ-GSPLERSFGKFVQ 442
AE +D G VY + + L + L G T+ L+ SP ++
Sbjct: 172 AE-ACGLD--PGTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDV--AFPLIE 226
Query: 443 DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502
VT VP+L+ W + D + +R
Sbjct: 227 REKVTHTALVPALLNLWLEAAEWDQADLSSLRVIQV------------------------ 262
Query: 503 SCGGTELSSAYIQ------GSLLQPQAFGAFSTATMTAGLV------------------- 537
GG LS + G LQ Q FG M GLV
Sbjct: 263 --GGAPLSPELARRVEERLGCPLQ-QVFG------MAEGLVNYTRLDDPPDVIMRTQGRP 313
Query: 538 --------ILDECGVPYPDDQPCVGEVG--------LFPLYLGASDRLLNADHEEVYFRG 581
I+D+ G P P GEVG Y A + A ++ ++R
Sbjct: 314 ISPADEIRIVDDQGEPVPP-----GEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRT 368
Query: 582 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERV 630
GD+++ GY V GR D +N GG K S EIE +
Sbjct: 369 ------------GDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENL 405
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 7e-17
Identities = 89/449 (19%), Positives = 145/449 (32%), Gaps = 81/449 (18%)
Query: 211 TYKELREQVMLVANALDTMFS--KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY+EL E+ +A L GD +A+ + + V+ LA++ AG V + ++
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A +A L + A+ + T A A ++ + + L
Sbjct: 61 AERLAFILEDAGARLLLTDS----------------ALASRLAGLVLPVILLDPLELAAL 104
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 388
D + P Y ++++SG+TG PK + T S + A
Sbjct: 105 DDAPAPPPPDAPSGPDDLAY------------VIYTSGSTGRPKGVVVTHRSLVNLLAWL 152
Query: 389 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDA---- 444
L D +L + +F + L GATL + ER +
Sbjct: 153 ARRYGLDPDDRVLQFASLSFDASVEEIFGALLAGATLVVPPED-EERDDAALLAALIAEH 211
Query: 445 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRS---FASTGETSNVDDDLWLSSKAWYNAII 501
VTVL PSL+ L + S GE L+ +
Sbjct: 212 PVTVLNLTPSLLAL------LAAALPPALASLRLVILGGE--------ALTPAL-VDRWR 256
Query: 502 ESCGGTELSSAY------IQGSLLQPQAFGAFSTATMTAG-------LVILDECGVPYPD 548
G L + Y + + A + + G L +LD+ P P
Sbjct: 257 ARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANTRLYVLDDDLRPVPV 316
Query: 549 DQP---CVGEVGLFPLYLGASDRLLNA----DHEEVYFRGMPMYKGMCLRRHGDIIKRTV 601
+G G+ YL L A G +Y R GD+++
Sbjct: 317 GVVGELYIGGPGVARGYLN--RPELTAERFVPDPFAGGDGARLY------RTGDLVRYLP 368
Query: 602 GGYIIVQGRADDTMNLGGIKTSSVEIERV 630
G + GR DD + + G + EIE
Sbjct: 369 DGNLEFLGRIDDQVKIRGYRIELGEIEAA 397
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 9e-17
Identities = 142/607 (23%), Positives = 238/607 (39%), Gaps = 121/607 (19%)
Query: 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK--SKHGGTWLPGSVLNIA 176
S+ F + +++ PEA+W + I ++ +LD ++ ++ W G N+
Sbjct: 2 MSYSEFYQRSIDDPEAFWAEQARRID--WQTPFTQVLDYSNPPFAR----WFVGGRTNLC 55
Query: 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDA 235
+ H K +A++ DE T+++L ++V +A L ++ +GD
Sbjct: 56 HNAV--DRHLAKRPEQLALIAVSTETDEERT--YTFRQLHDEVNRMAAMLRSLGVQRGDR 111
Query: 236 IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGR 295
+ I MPM A LA G + + FA+ +A R+ +K I + D RGG+
Sbjct: 112 VLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGK 171
Query: 296 KFPLYSKVLGAAPLKAIVLPA---------------IGNDVGI-PLREQDLSWK---DFL 336
P Y +L A A P G DV LR Q L + ++L
Sbjct: 172 VVP-YKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYATLRAQHLGARVPVEWL 230
Query: 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA------ 390
S + P+Y IL++SGTTG+PK + R T G+A
Sbjct: 231 ESNE----PSY-------------ILYTSGTTGKPKGVQ-------RDTG-GYAVALATS 265
Query: 391 --HI-DLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFG---KFVQD 443
I K G+ + +++GWV+G I+++ L G +Y+G P G + V+
Sbjct: 266 MDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEK 325
Query: 444 AGVTVLGTVPSLVKAWR--NTNCLEGLDWTKIRSFASTGE-----TSN---------VDD 487
V + + P+ ++ + + L D + +R+ GE T++ V D
Sbjct: 326 YKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEALGVPVID 385
Query: 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP 547
+ W + W I+ G E +P G+ + +L+E
Sbjct: 386 NYWQTETGW--PILAIARGVE----------DRPTRLGSPGVPMYGYNVKLLNEV----- 428
Query: 548 DDQPC-VGEVGLF----PLYLGASDRLLNADHEEV--YFR--GMPMYKGMCLRRHGDIIK 598
+PC E G+ PL G + D V Y+ G +Y D
Sbjct: 429 TGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTF------DWGI 482
Query: 599 RTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658
R GY + GR DD +N+ G + + EIE + ++ E A + V A G +V V
Sbjct: 483 RDADGYYFILGRTDDVINVAGHRLGTREIEE-SISSHPAVAEVAVVGVKDALKG-QVAVA 540
Query: 659 FVVLKKG 665
FVV K
Sbjct: 541 FVVPKDS 547
|
Length = 629 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-16
Identities = 104/492 (21%), Positives = 161/492 (32%), Gaps = 135/492 (27%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL + +A AL + GD +A +P V++YLA G V+ I +
Sbjct: 2 LTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYR 61
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ LR ++A+ + +P
Sbjct: 62 ERELGFILRQARAR----------------------------VLFVPD------------ 81
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCT 385
++ F DY P D V +L++SGTTGEPK + T L+ +R
Sbjct: 82 --EFRGF----DYAAMP----------DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSY 125
Query: 386 AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL-------ERSFG 438
E L DV P+ L + G FL G L L G+ +
Sbjct: 126 VERLG---LTPDDVVLMPSPLAHITG-------FLYGLELPLLLGATVVLQDRWDPARAL 175
Query: 439 KFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498
+ +++ GVT + G D +R F G V +L
Sbjct: 176 ELIREHGVTFTMGATPFLADLLAAADAAGPDLPSLRVFLCGGAP--VPREL--------- 224
Query: 499 AIIESC---GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP-------- 547
G ++ AY G P G P P
Sbjct: 225 --ARRAAEALGAKVVRAY--GMTEVPLVTVGTPDD---PDDKRAATDGRPVPGVEVRIVD 277
Query: 548 -DDQP----CVGEV-----GLFPLYLGASDRLLNADH--EEVYFRGMPMYKGMCLRRHGD 595
D GE+ LF LG D N + ++ +FR GD
Sbjct: 278 DDGNDVPPGEEGELQVRGPQLF---LGYLDPPDNTEAFTDDGWFRT------------GD 322
Query: 596 IIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655
+ + GY+ + GR D + GG S+ EIE + + ++ E A +++ G E
Sbjct: 323 LGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHP-AVAEVAVVAMPDERLG-ER 380
Query: 656 LVIFVVLKKGFT 667
+ VV G +
Sbjct: 381 VCAVVVPAPGAS 392
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 3e-16
Identities = 92/339 (27%), Positives = 143/339 (42%), Gaps = 57/339 (16%)
Query: 166 TWLPGSVLNIAECCL---LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLV 222
+WL +NIA + + K VA+ + D S TYKEL+E
Sbjct: 35 SWLETGKVNIAYEAIDRHADGGRKDK----VALRYL----DASRKEKYTYKELKELSNKF 86
Query: 223 ANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKA 281
AN L + KGD + I MP L + G +V + ++F + RL S+A
Sbjct: 87 ANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEA 146
Query: 282 KGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVD 340
K + T +L K P LK ++L +G DV +D
Sbjct: 147 KVLITTPALLE--------RKPADDLPSLKHVLL--VGEDVEEGPGT-----------LD 185
Query: 341 YHPRPNYYSPVYNPV-----DAVVNIL-FSSGTTGEPKAIPWTQLSSIRCTAEG-WAHID 393
++ S ++ D IL ++SG+TG+PK + + ++ G + +D
Sbjct: 186 FNALMEQASDEFDIEWTDREDGA--ILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYV-LD 242
Query: 394 LKVGDVYCWPT-NLGWVMGPVI-LFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVL 449
L DVY W T + GWV G +F+ +LNGAT + G SP ER + ++D VTV
Sbjct: 243 LHEDDVY-WCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSP-ERWYR-ILEDYKVTVW 299
Query: 450 GTVPS----LVKAWRNTNCLEGLDWTKIRSFASTGETSN 484
T P+ L+ A + ++ D + +R S GE N
Sbjct: 300 YTAPTAIRMLMGA--GDDLVKKYDLSSLRHILSVGEPLN 336
|
Length = 570 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 5e-15
Identities = 56/261 (21%), Positives = 96/261 (36%), Gaps = 43/261 (16%)
Query: 210 MTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL V +A L KGD + + P ++ +++LA++ AG VV+ A+
Sbjct: 33 LTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAG-AVVTTANPLY 91
Query: 269 -AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLRE 327
EIA +++ S AK T L K+ A ++L + +
Sbjct: 92 TPAEIAKQVKDSGAKLAITTS---------ELAEKLASLALEPVVLLDSADDGSA----- 137
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRC 384
+ + + P V D + +SSGTTG K + T ++++
Sbjct: 138 -------AIDDLLFADEPEPPVVVIKQDDVAA-LPYSSGTTGRSKGVMLTHRNLIANVAQ 189
Query: 385 TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL----ERSFGKF 440
G + DV + + G + L L G+ + KF
Sbjct: 190 LVAGEG-PNFDREDVTLCVLPMFHIYG----LTVILLA---LLRLGATVVVMPRFDLEKF 241
Query: 441 ---VQDAGVTVLGTVPSLVKA 458
++ VT L VP +V A
Sbjct: 242 LAAIEKYKVTHLPVVPPIVLA 262
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 1e-14
Identities = 106/518 (20%), Positives = 193/518 (37%), Gaps = 107/518 (20%)
Query: 210 MTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
+TY++L + ++ + + +G+ I I +P +V + LA++LAG V V + +
Sbjct: 8 LTYRKLLTASLALSRLIKKLTKEGENIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGE 67
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI--PLRE 327
+ + + + K + T R F L L+ +V+ G + LR
Sbjct: 68 EGLRSACKQAGIKTVIT-------SRAF------LEKLKLEGLVVLLEGVRIVYLEDLRA 114
Query: 328 QDLSWKD----FLSSVDYHPRPNYYSPVYNP-VDAVVNILFSSGTTGEPKAIPWTQ---L 379
+ +S D FL++ P + D ILF+SG+ G PK + + L
Sbjct: 115 K-ISKADKLKAFLAA--KLPPALLRLFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLL 171
Query: 380 SSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF-LNGATL--------ALYQG 430
++I A A IDL DV ++G + LF +F L L +Y
Sbjct: 172 ANIDQIA---AVIDLNTEDV---------LLGALPLFHAFGLTVTLLLPLLTGLRVVYYP 219
Query: 431 SPLE-RSFGKFVQDAGVTVLGTVPSLVKAW-RNTNCLEGLDWTKIRSFASTGETSNVDDD 488
+PL+ + + ++D T+L P+ ++ + RN + D++ +R G + +
Sbjct: 220 NPLDAKKIAELIRDYKATILCGTPTFLRGYARNAH---PEDFSSLR-LVVAG-AEKLPEA 274
Query: 489 LWLSSKAWYN----AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATM----TAGLVI-- 538
+ + I+E G TE S P + +T T G +
Sbjct: 275 T---RELFEEKFGIRILEGYGATECS----------PVI--SVNTPMGNKPGTVGRPLPG 319
Query: 539 LDECGVPYPDDQPC-VGEVGL--------FPLYLGASDR--LLNADHEEVYFRGMPMYKG 587
++ V + +GE GL YL ++ + + Y
Sbjct: 320 IEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWY--------- 370
Query: 588 MCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647
GDI K G++ + GR +GG S +E + + AA+ V
Sbjct: 371 ----DTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHAAVEVP 426
Query: 648 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL 685
G E +V+ + P++L I +A L
Sbjct: 427 DEKKG-EKIVLLTTTEDL---DPEELNAILREAGLPNL 460
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 2e-14
Identities = 109/517 (21%), Positives = 176/517 (34%), Gaps = 124/517 (23%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYL 251
+A+V+ + +TY EL E+ +A L GD +A+ + + V+ L
Sbjct: 4 IALVYGDRS--------LTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAIL 55
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA 311
AI+ AG V + ++ A +A L S A+ + T +
Sbjct: 56 AILKAGAAYVPLDPAYPAERLAFMLEDSGARVLLTDE----------------------- 92
Query: 312 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA--VVNILFSSGTTG 369
L + + L ++ P VDA + ++++SG+TG
Sbjct: 93 ------------SLAPLARADQLPLVILEEELDAEDAGPPAPAVDADDLAYVMYTSGSTG 140
Query: 370 EPKAIPWTQLSSIR-CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-------LFSSFLN 421
PK + +R + I L D + + P+ ++ + LN
Sbjct: 141 RPKGVAVPHRGVVRLVRNTNY--IALDPDDRFL-------QLSPLSFDASTFEIWGALLN 191
Query: 422 GATLALYQGSPLERS--FGKFVQDAGVTVLGTVPSLVK--AWRNTNCLEGLDWTKIRSFA 477
G L L L + + + GVTVL +L + L GL R
Sbjct: 192 GGRLVLIDKETLLDPDRLARLIAEQGVTVLWLTAALFNQLVDEDPEALAGL-----RQLL 246
Query: 478 STGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA-TMTAG- 535
G+ + A ++ +C G L + Y G P FST +T
Sbjct: 247 VGGDVLSP---------AHVRRVLAACPGLRLINGY--G----PTENTTFSTCHVITRLD 291
Query: 536 ----------------LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNA---- 572
+ ILDE G P P P VG GL YL + L A
Sbjct: 292 EAADSIPIGRPIPNTTVYILDEEGQPVPIGVPGELYVGGDGLALGYLNRPE--LTAERFV 349
Query: 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632
+ G +Y R GD+ + G I GR D + + G + EIE+
Sbjct: 350 PDP--FGPGERLY------RTGDLARWRPDGNIEFLGRIDRQVKIRGFRIELGEIEQALL 401
Query: 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ 669
Q + AA+ V G + LV +VV + +
Sbjct: 402 QHPG--VREAAVLVREDAAGDKRLVAYVVARGALDAA 436
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 2e-14
Identities = 109/483 (22%), Positives = 176/483 (36%), Gaps = 104/483 (21%)
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPM 242
H + N +AI + +TYK+ E V VAN L+ SK IAI +
Sbjct: 8 KKHASLQPNKIAIKENDRV--------LTYKDWFESVCKVANWLNEKESKNKTIAILLEN 59
Query: 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK 302
+ + ++ +AG+ V + + E+ RL +S A I T+ + L
Sbjct: 60 RIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLN---------- 109
Query: 303 VLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
L I D WK + Y P Y+P+ N +A +
Sbjct: 110 -----DLPDEEGRVIEID----------EWKRMIE--KYLPT---YAPIENVQNAPFYMG 149
Query: 363 FSSGTTGEPKAIPWTQLS---SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS- 418
F+SG+TG+PKA Q S S C D + + V+ L S
Sbjct: 150 FTSGSTGKPKAFLRAQQSWLHSFDCNVH----------DFHMKREDS--VLIAGTLVHSL 197
Query: 419 FLNGATLALYQGSP--LERSFGKF-----VQDAGVTVLGTVPSLVKAWRNTNCL------ 465
FL GA LY G L R F ++ ++V+ TVP+++++ N +
Sbjct: 198 FLYGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENRVIENKMK 257
Query: 466 ---EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELS---SAYIQGSLL 519
G W + + N+ + +K + E G +ELS + + S
Sbjct: 258 IISSGAKWEAE----AKEKIKNI----FPYAKLY-----EFYGASELSFVTALVDEESER 304
Query: 520 QPQAFG-AFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVY 578
+P + G F V + C + Q GE+G +Y+ + + V
Sbjct: 305 RPNSVGRPFHN-------VQVRICNEAGEEVQK--GEIGT--VYVKSPQFFMGYIIGGVL 353
Query: 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERV---CDQAD 635
R + M +R G + G+I + GR + + GGI EIE V D
Sbjct: 354 ARELNADGWMTVRDVGYEDEE---GFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVD 410
Query: 636 ESI 638
E +
Sbjct: 411 EIV 413
|
Length = 487 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 3e-14
Identities = 108/483 (22%), Positives = 171/483 (35%), Gaps = 74/483 (15%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL+E+V NAL + + + + + + T + I G V V I
Sbjct: 32 TYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTP 91
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LK-AIVLPAIGNDVGIPLRE 327
+ L S+A+ + + + + L P L+ IV+ G
Sbjct: 92 DDYRYYLNDSRARVLVISEELW------EVLKPALQKDPHLRHVIVVGGAGPGA------ 139
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE 387
LS+ +++ S D + L+SSG+TG PK + + TAE
Sbjct: 140 --LSYAQLIATAAEELEAAATSA-----DDMAFWLYSSGSTGRPKGVVHLH-HDMLVTAE 191
Query: 388 GWAHIDLKV--GDVYCWPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQDA 444
+A L + DV L + G L+ GAT L P + ++
Sbjct: 192 AYAKNVLGITEDDVVFSAAKLFFAYGLGNGLYFPLSVGATTVLMPERPTPDAVFATIERY 251
Query: 445 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIES 503
TV VP+L A D + +R S GE + ++ K + I++
Sbjct: 252 KPTVFFGVPTLYAAMLAAPEKPERDLSSLRLCVSAGEA--LPAEIGYRWKELFGLEILDG 309
Query: 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAG--LVILDECGVPYPDDQPCVGEVGLFPL 561
G TE+ ++ +P A ++ G + ++DE G D GE+G
Sbjct: 310 IGSTEMLHIFLSN---RPGAVKYGTSGKPVPGYEVKLVDEDGEEVAD-----GEIG---- 357
Query: 562 YLGASDRLLNADHEEVYFRG---MPMY-----------KGMCLRRHGDIIKRTVGGYIIV 607
E++ RG Y G R GD R GY
Sbjct: 358 --------------ELWVRGDSSAAGYWNRREKTRETFVGEWTRT-GDKYYRDEDGYYWY 402
Query: 608 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 667
GR+DD + + GI S E+E ++LE A + G FVVLK G+
Sbjct: 403 CGRSDDMLKVSGIWVSPFEVED-ALLQHPAVLEAAVVGA-EDEDGLTKPKAFVVLKDGYQ 460
Query: 668 SQP 670
P
Sbjct: 461 PSP 463
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 4e-13
Identities = 102/500 (20%), Positives = 179/500 (35%), Gaps = 89/500 (17%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVR 245
+ + VA++++E +TY+EL E+V +A+ L GD +AI
Sbjct: 27 KDRPDGVALMYKEL----GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPE 82
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD------FILRGGRKFPL 299
I LAI+ G V V I + ++A L S++K IF ++ + +
Sbjct: 83 WAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKV 142
Query: 300 YSKVLGAAPLKAIVLP-----AIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNP 354
++ ++ V + D GI L D S R P
Sbjct: 143 VDLIVIIDLVREAVEAKALVLEVFPDEGISLFLID--------SAGLEGRIAPPKP---- 190
Query: 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-LKVGDVY-CW-PTNLGWVMG 411
D + I+++SGTTG PK + T + + A + + GD + P L +
Sbjct: 191 -DDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLP--LAHIFE 247
Query: 412 PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSL------------VKAW 459
L G L++ P R+ + +++ TV+ VP + KA
Sbjct: 248 RAFEGGLALYGGVTVLFKEDP--RTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAP 305
Query: 460 RNTNCL-EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL 518
L + + L ++ + + I ++ GG + A G+
Sbjct: 306 AVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGG-RIRYALSGGAP 364
Query: 519 LQPQAFGAFSTA-----------TMTAGLVILDECGVPYPDDQPCVGEVG-LFPLYLGAS 566
L P+ F + T T+ +V ++ P D+ +G VG P G
Sbjct: 365 LSPEL-LHFFRSLGIPILEGYGLTETSAVVSVN------PPDRFVLGTVGKPLP---GIE 414
Query: 567 DRLLNADHEEVYFRGMPMYKGMCLR--------------RHGDIIKRTVGGYIIVQGRAD 612
++ AD E+ RG + KG R GD+ + GY+++ GR
Sbjct: 415 VKI--ADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKK 472
Query: 613 DTMNL-GGIKTSSVEIERVC 631
+ + L G + IE
Sbjct: 473 ELIKLSNGKNIAPEPIESKL 492
|
Length = 613 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 5e-13
Identities = 80/328 (24%), Positives = 124/328 (37%), Gaps = 38/328 (11%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDV-YCWPT-NLGWVMG 411
D + L++SGTTG+PK + + AE +A + L+ GD + + +G
Sbjct: 91 DDIAYWLYTSGTTGKPKGVMHRHRDPL-TFAEAFARELLGLQPGDRIFSSSKLFFAYGLG 149
Query: 412 PVILFSSFLNGATLALYQGSPL-ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDW 470
+LF F GA+ L G P E + TVL VP+L +A + +
Sbjct: 150 NSLLFPLFS-GASAVLLPGWPTPEAVLDLLAR-HRPTVLFGVPALYRALLESGAGSAPLF 207
Query: 471 TKIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFST 529
+R S GE + L I++ G TE+ +I P A +T
Sbjct: 208 RSVRLCVSAGE--ALPAGLAERWAEATGIEILDGIGSTEVLHIFISNR---PGAARPGTT 262
Query: 530 ATMTAG--LVILDECGVPYPDDQPCVGEV-----GLFPLYLGASDRLLNADHEEVYFRGM 582
G ++DE G P G++ L P Y ++ +
Sbjct: 263 GRPVPGYEARLVDESGREVPAGTV--GDLWVRGPSLAPGYWNLPEKTQRTLRDGWL---- 316
Query: 583 PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETA 642
R GD R G+ QGRADD + + G S +E+E + ++ E A
Sbjct: 317 ---------RTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGE-HPAVAEAA 366
Query: 643 AISVSPAGGGPEVLVIFVVLKKGFTSQP 670
++V P G L FVV + G Q
Sbjct: 367 VVAV-PDEDGLVRLKAFVVPRPGEAIQQ 393
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 6e-13
Identities = 76/331 (22%), Positives = 124/331 (37%), Gaps = 36/331 (10%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH----IDLKVGDVYCWPT-NLGWVM 410
D + +++SGTTG PK +P + A +A+ IDL+ DV+ W + GW
Sbjct: 88 DDLFAQMYTSGTTGLPKGVPV----PLNALAAFYAYMRYAIDLRDDDVF-WNIADPGWAY 142
Query: 411 G-PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 469
G + G T +G + ++ GVT P+ +
Sbjct: 143 GLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADAAAR 202
Query: 470 WT-KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA-FGAF 527
K+R +S GE N + W + I + G TE L + G+
Sbjct: 203 IKLKLRVASSAGEPLNPEVVRWFQA-NLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSM 261
Query: 528 STATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGM---PM 584
+ +LD+ G P D GE G + + +S L +F G P
Sbjct: 262 GLPLPGYRIAVLDDDGQPLAD-----GEPGQLAIDVASSPLL--------WFSGYWDDPE 308
Query: 585 YKGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 640
+ GD+++R GY GRADD + G + ++E ++ E
Sbjct: 309 KTAELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVES-ALLEHPAVAE 367
Query: 641 TAAISVSPAGGGPEVLVIFVVLKKGFTSQPD 671
A + V G E++ FVVLK+G+ +
Sbjct: 368 AAVVGVPDPLRG-EIVKAFVVLKEGYAGSDE 397
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 7e-13
Identities = 102/412 (24%), Positives = 158/412 (38%), Gaps = 67/412 (16%)
Query: 298 PLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDA 357
L+ +L A L A+V+PA L DL +D S P+ D
Sbjct: 37 ELWEAMLAAIKLGAVVIPATTL-----LTPADL--RDRFS--RGKPKAIVADETR--ADD 85
Query: 358 VVNILFSSGTTGEPKAIPWTQLS---SIRCTAEGWAHIDLKVGDVYCWPTNLGWV-MGPV 413
+ + F+SGTTG PK + T +S T W I L+ GD++ ++ GW
Sbjct: 86 PILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMY-W--IGLQPGDIHLNISSPGWAKHAWS 142
Query: 414 ILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVPSLVKAWRN--TNCLEGLDW 470
F+ + GAT+ + R + ++ GVT P+ WR L D
Sbjct: 143 SFFAPWNAGATVFGINYPRFDARRYLGALEKFGVTTFCAPPT---VWRMFIQQDLAQYD- 198
Query: 471 TKIRSFASTGETSNVD-DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 529
++R S GE N + + KAW I + G TE ++A I S Q G+
Sbjct: 199 VRLREAVSAGEPLNPEVIERV--KKAWGLTIRDGYGQTE-TTAMIGNSPGQKVKPGSMGR 255
Query: 530 ATMTAGLVILDECGVPYPDDQPCVGEV---------GLFPLYLGASDRLLNADHEEVYFR 580
+V+LD+ G P GE+ GL Y+G ++ A Y
Sbjct: 256 PLPGYRVVLLDDEGKEIPVT---EGEIALDLGDRPIGLMLGYMGDPEKTAAAFRGGYY-- 310
Query: 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 640
R GD R GY+ GRADD + S E+E +LE
Sbjct: 311 -----------RTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESA-------LLE 352
Query: 641 TAAISVSPAGGGPE-----VLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 687
A++ + P+ V ++VLK G+ + +F+ ++ +L P
Sbjct: 353 HPAVAEAAVVPSPDPIRLAVPKAYIVLKPGYEPSRELALELFAH-VRERLAP 403
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 9e-13
Identities = 80/329 (24%), Positives = 132/329 (40%), Gaps = 41/329 (12%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVYCWPTNLGWV--MG 411
D V I F+SGTTG PK I + + L+ DV+ L + +G
Sbjct: 147 DDVALIGFTSGTTGLPKGTMHFH-RDILAICDAFPRHVLQPTPDDVFIGSPPLAFTFGLG 205
Query: 412 PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRN-TNCLEGLDW 470
++LF + + L Q +P K +Q+ T+L T P+ A+R ++ D
Sbjct: 206 GLVLFPLRFGASAVLLEQATP--PLLLKAIQEHRATILFTAPT---AYRAMLIKVKAFDI 260
Query: 471 TKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAYIQGS--LLQPQAF 524
+ +R S GET + +W + WY II+ G TE+ +I + +P A
Sbjct: 261 SSLRKCVSAGET--LPAKVW---QDWYERTGLKIIDGIGATEMLHIFISANEENAKPGAT 315
Query: 525 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPM 584
G A I+D+ G P GE G + R L+ + ++ Y R
Sbjct: 316 G-KPVPGYEA--RIVDDQGNEVPR-----GEAGRLAVRGPTGCRYLDDERQQEYVRDGWN 367
Query: 585 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644
GDI ++ GY R+DD + G ++ E+E + E A I
Sbjct: 368 VT-------GDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLT-HPDVAECAVI 419
Query: 645 SVSPAGGGPEVLVIFVVLKKGFTSQPDKL 673
V P +++ +VL+ G ++ +L
Sbjct: 420 GV-PDEERGQIVCAHIVLRDG--TKATEL 445
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 7e-12
Identities = 74/360 (20%), Positives = 127/360 (35%), Gaps = 69/360 (19%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL----- 415
++++SG+TG+PK + T +I C + LG G +L
Sbjct: 104 VIYTSGSTGKPKGVVITH-RNI-CNF------------LRAEGAILGIRPGDRVLQFASI 149
Query: 416 ---------FSSFLNGATLALYQGSPLERS--FGKFVQDAGVTVLGTVPSLVKAWRNTNC 464
F++ L G TL + R +F+ VTV PSL+ +
Sbjct: 150 AFDVSILEIFTTLLAGGTLVI--PPEELRLEDLAEFLNRLRVTVAHLTPSLLALLDPEDV 207
Query: 465 LEGLDWTKIRSFASTGET-SNVDDDLWLSSKAWYNAIIESCGGTE--LSSAYIQGSLLQP 521
+R+ GE D W + N G TE +++ + + +P
Sbjct: 208 ------PSLRTLILGGEACPQALVDRWSKPRRLLNT----YGPTEATVTATASRLTPGKP 257
Query: 522 QAFG-AFSTATMTAGLVILDECGVPYPDDQPCV--GEVGLFPLYLG----ASDRLLNADH 574
G T +LD PD +P V G VG L +G A L +
Sbjct: 258 VNIGRPLPNYTC----WVLD------PDLEPLVPIGAVG--ELCIGGPGVARGYLNRPEL 305
Query: 575 -EEVYFRG--MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC 631
E + G + R GD+++ G + GR DD + + G + EIE V
Sbjct: 306 TAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVL 365
Query: 632 DQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 691
++ + + GG + LV F+ + +P + + ++ + P + V
Sbjct: 366 RALPGVVVAAVVLLLDDPGG--KQLVAFLAVDGAAGGEPADVDIALLRSALRERLPSYMV 423
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 7e-12
Identities = 112/535 (20%), Positives = 193/535 (36%), Gaps = 95/535 (17%)
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
L I + + RK + A+ + R TY EL E+V +ANAL +
Sbjct: 6 LTIGR---ILRHGARKHPDKEAVYFDGRR--------TTYAELDERVNRLANALRALGVK 54
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QDFI 290
KGD +A+ + + Y A+ G V+ I EIA L ++ + + +F+
Sbjct: 55 KGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFV 114
Query: 291 LRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350
PL + +L P V+ G+ PL + +++ L++ + P
Sbjct: 115 -------PLLAAILPQLPTVRTVI-VEGDGPAAPLAPEVGEYEELLAA---AS-DTFDFP 162
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWT--QLSSIRCTAEGWAHIDLKVGDVY-----CWP 403
+ DA +L++SGTTG PK + + L W + L DVY +
Sbjct: 163 DIDENDAAA-MLYTSGTTGHPKGVVLSHRNLFLHSLAVCAW--LKLSRDDVYLVIVPMFH 219
Query: 404 TN-LGWVMGPVILFSSFLNGATLAL---YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAW 459
+ G P + + + GA + + L ++ VT VP++ +
Sbjct: 220 VHAWGL---PYL---ALMAGAKQVIPRRFDPENLL----DLIETERVTFFFAVPTIWQML 269
Query: 460 RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSL 518
+D++ +R G + + L K + +++ G TE S +
Sbjct: 270 LKAPRAYFVDFSSLRLVIYGG--AALPPALLREFKEKFGIDLVQGYGMTETSPV-VSVLP 326
Query: 519 LQPQAFGAFSTATMTAGLV-------ILDECGVPYPDDQPCVGEV---------GLFPLY 562
+ Q G ++ +AG I+D+ G P D VGE+ G Y
Sbjct: 327 PEDQLPGQWTKRR-SAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQG----Y 381
Query: 563 LG---ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 619
A+ ++ L GD+ GY+ + R D + GG
Sbjct: 382 WNRPEATAETIDGGW---------------LHT-GDVGYIDEDGYLYITDRIKDVIISGG 425
Query: 620 IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLK 674
E+E ++ E A I V G + VVLK G T +L+
Sbjct: 426 ENIYPRELEDALY-GHPAVAEVAVIGVPDEKWGERPVA-VVVLKPGATLDAKELR 478
|
Length = 521 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 2e-11
Identities = 94/451 (20%), Positives = 151/451 (33%), Gaps = 70/451 (15%)
Query: 199 EDRCDESAVNL----MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAI 253
D A+ +TY EL + +A L G+ +AI ++ V+ LA+
Sbjct: 238 ATTPDAVALVRGGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAV 297
Query: 254 ILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV 313
+ AG V + + A +A L S+ + TQ
Sbjct: 298 LKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQA------------------------- 332
Query: 314 LPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKA 373
+DVG+P D + + + P DA+ I+++SG+TG+PK
Sbjct: 333 -HLRVDDVGLPGLALDDALSEIPDTDP--------IPQALLGDALAYIIYTSGSTGQPKG 383
Query: 374 IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLAL----YQ 429
+ + + A L D +L + +F + L GA L L Q
Sbjct: 384 VRIEHRALANLLNDAGARFGLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQ 443
Query: 430 GSPLERSFGKFVQDAGVTVLGTVPSLVK--AWRNTNCLEGLDWTKIRSFASTGETSNVDD 487
P + ++ G+TVL VP L++ ++R S GE +
Sbjct: 444 VDPAA--LLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLAL 501
Query: 488 DLWLSSKAWYNAIIESCGG-----TELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC 542
L A + + G + S I L G T L ILD+
Sbjct: 502 VQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQ---LYILDQ- 557
Query: 543 GVPYPDDQPC--VGEVGLFPLYLGASDRLLNADH-EEVYFRGMPMYKGMCLRRHGDIIKR 599
P GE+ + L L A L D E + +Y R GD+ +
Sbjct: 558 ---GLRPLPLGVPGELYIAGLGL-ALGYLNRPDLTAERFIAL-RLY------RTGDLARP 606
Query: 600 TVGGYIIVQGRADDTMNLGGIKTSSVEIERV 630
G + GR D + + G + EIE
Sbjct: 607 LADGALEYLGRKDSQVKIRGFRIELGEIEAA 637
|
Length = 642 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 85/342 (24%), Positives = 131/342 (38%), Gaps = 61/342 (17%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPT-NLGWVMGPVI-LFSS 418
+ F+SGTTG+PK + + + A +DL+ DVY W T + GWV G + +
Sbjct: 94 LHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVY-WCTADPGWVTGTSYGIIAP 152
Query: 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKIRSF 476
LNG TL + +G + +++ VTV T P+ ++ D + +R
Sbjct: 153 LLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTALRMLMRAGPELAARYDLSSLRHI 212
Query: 477 ASTGETSNVDDDLWLSSK-------AWYN----AI-IESCGGTELSSAYIQGSLLQPQAF 524
AS GE N + +W W+ AI I + G + GS+ +P
Sbjct: 213 ASVGEPLNPEVVVWGEKVLGMPIHDTWWQTETGAIMIANYPGIPVKP----GSMGRP--L 266
Query: 525 GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-------FPLYLGASDRLLNADHEEV 577
A + D Q VGE+ L F YLG +R
Sbjct: 267 PGIEAAVIERD---GDGLTPVTGPGQ--VGELALKPGWPSMFRGYLGNEERY------AS 315
Query: 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADES 637
F Y GD+ R GY GRADD + G E+E
Sbjct: 316 SFVD-GWY------LTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESA------- 361
Query: 638 ILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKLK 674
++E A++ + G P E++ FV L+ GF ++L+
Sbjct: 362 LMEHPAVAEAGVIGKPDPVAGEIVKAFVSLRPGFEP-SEELR 402
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 3e-11
Identities = 108/489 (22%), Positives = 187/489 (38%), Gaps = 72/489 (14%)
Query: 211 TYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+++EL AN L +GD +A+ +P ++ +A I G V +
Sbjct: 43 SFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLT 102
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A++I RL+ SKAK I T D + A + +I + L
Sbjct: 103 AKDILYRLQASKAKCIVTSDEL---------------APAVDSIASEC--PSLKTKLLVS 145
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVN----ILFSSGTTGEPKAIPWTQLS-SIR 383
+ S +L ++ S + V I F+SGTTG PK + S +
Sbjct: 146 EHSRDGWL---NFKELLKEASTEHTCVKTKSQEPMAIYFTSGTTGFPKMAEHSHSSLGLG 202
Query: 384 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLE-RSFGKFV 441
G +DL D+ ++ GW+ + LFS ++ GA + ++ + + + +
Sbjct: 203 LKVNGRYWLDLTPSDIMWNMSDTGWIKAAIWSLFSPWIQGACVFVHHLPRFDPKVILQTL 262
Query: 442 QDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-- 499
+T + P++ + + L + +R + GE N + + W
Sbjct: 263 SKYPITTFCSAPTVYRMLVQQD-LTSYKFKSLRHCVTGGEPLNPEV-----LEQWKAQTG 316
Query: 500 --IIESCGGTE--LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE 555
+ E G TE L A +G ++P G+ A+ + I+D+ G P G+
Sbjct: 317 LDLYEGYGQTETGLICANFKGMKIKP---GSMGKASPPYDVQIIDDNGNVLPPGTE--GD 371
Query: 556 VG----------LFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 605
+G LF Y+ ++ + Y G D GY
Sbjct: 372 IGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYITG-------------DRGIMDEDGYF 418
Query: 606 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG 665
GRADD +N G + E+E + +++E+A +S SP EV+ FVVL
Sbjct: 419 WFVGRADDVINSSGYRIGPFEVESALIE-HPAVVESAVVS-SPDPIRGEVVKAFVVLAPQ 476
Query: 666 FTSQ-PDKL 673
F S P++L
Sbjct: 477 FLSHDPEQL 485
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 86/353 (24%), Positives = 137/353 (38%), Gaps = 43/353 (12%)
Query: 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQ--LSSIRCTAEGWAHIDLKVGDVYCWPTNLGW 408
V + D + + F+SGTTG PK + T T W +DL+ D++ + GW
Sbjct: 77 VTSADDPAL-LYFTSGTTGLPKMVLHTHSYPLGHLVTGAYW--LDLRPDDLHWTIADPGW 133
Query: 409 VMGPVI-LFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL 465
G LF+ +L GA + +Y G ER+ ++ GVT P+ + + L
Sbjct: 134 AKGAWSSLFAPWLLGAAVFVYHGRRFDAERTLEL-LERYGVTTFCAPPTAYRMLLQQD-L 191
Query: 466 EGLDWTKIRSFASTGETSNVDD-DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAF 524
D++ +R S GE N + D W A I + G TE + +
Sbjct: 192 SSYDFSHLRHVVSAGEPLNPEVIDWWR--AATGLPIRDGYGQTE-TGLLVANFPGMEVKP 248
Query: 525 GAFSTATMTAGLVILDECGVPYPDDQPCVGEV---------GLFPLYLGASDRLLNADHE 575
G+ + I+D+ G P + G++ GLF YL + +
Sbjct: 249 GSMGRPAPGYRVAIIDDEGNELPPGEE--GDIAVRVKPRPPGLFRGYLK------DPEKT 300
Query: 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD 635
E RG Y GD + GY GRADD + G + E+E +
Sbjct: 301 EATIRG-DWY------LTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHP 353
Query: 636 ESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 687
+ E A + P G EV+ FVVL G+ ++L + ++ + P
Sbjct: 354 A-VAEAAVVGSPDPVRG--EVVKAFVVLAPGYQP-SEELAKELQEHVKKRTAP 402
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 3e-10
Identities = 51/214 (23%), Positives = 88/214 (41%), Gaps = 25/214 (11%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251
A+V+ + R TY+E ++ +A+AL + KGD +A+ P T + +
Sbjct: 21 TAVVYGDRR--------YTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHF 72
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAPLK 310
+ +AG V+V + A +IA L S+AK +F Q+F L + L K
Sbjct: 73 GVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEF-------LSLAEEALALLSTK 125
Query: 311 AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVD--AVVNILFSSGTT 368
I+ I ++ ++D L+ D P P D +++ ++SGTT
Sbjct: 126 EIIDTEIIVISPAAEDSEEGDYEDLLAGGDPDP------LPIPPDDEWDPISLNYTSGTT 179
Query: 369 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCW 402
G PK + +T + + VY W
Sbjct: 180 GNPKGVVYTHRGAYLNALGNVIEWGMPDRPVYLW 213
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 4e-10
Identities = 82/342 (23%), Positives = 126/342 (36%), Gaps = 29/342 (8%)
Query: 356 DAVVNILFSSGTTGEPK--AIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV 413
D + ++++SG+TG+PK AI L++ C + L D + + +G
Sbjct: 656 DNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAER--LQLAADDSMLMVSTFAFDLGVT 713
Query: 414 ILFSSFLNGATLAL--YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 471
LF + +GATL L + +F + D GVTVL VPS ++A + +
Sbjct: 714 ELFGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRVALP--R 771
Query: 472 KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTA 530
R+ GE VD + + +I G TE + L + + FG
Sbjct: 772 PQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEERDFGNVPIG 831
Query: 531 TMTA--GLVILDECGVPYPDDQPCVGEVGLFPLYLG----ASDRLLNADHEEVYFRGMPM 584
A GL ILD P P VGE LY+G A F P
Sbjct: 832 QPLANLGLYILDHYLNPVP--VGVVGE-----LYIGGAGLARGYHRRPALTAERFVPDPF 884
Query: 585 -YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAA 643
G L R GD+ + G I GR D + + G + EIE A + E
Sbjct: 885 GADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIE-ARLLAQPGVREAVV 943
Query: 644 ISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKL 685
++ G LV ++V ++++L
Sbjct: 944 LAQPGDAG--LQLVAYLVPAAVADGAE---HQATRDELKAQL 980
|
Length = 3956 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 4e-10
Identities = 113/491 (23%), Positives = 189/491 (38%), Gaps = 55/491 (11%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
++Y EL QV + AL + + + + + M V I +L I AG V V++
Sbjct: 31 LSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVALNTLLT 90
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLRE 327
A + A L S+A+ +F +L P+ LG +P L+ V+ E
Sbjct: 91 ADDYAYMLEDSRARVVFVSGELL------PVIKAALGKSPHLEHRVVVG-----RPEAGE 139
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE 387
L+ + L++ + P D L+SSG+TG PK + T S+ TAE
Sbjct: 140 VQLA--ELLAT-----ESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTH-SNPYWTAE 191
Query: 388 GWAH--IDLKVGDVYCWPTNL--GWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQD 443
+A + ++ DV L + +G + F + GAT L P + ++
Sbjct: 192 LYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSV-GATTVLMGERPTPDAVFDRLRR 250
Query: 444 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIE 502
T+ VP+L A L D ++R S GE + ++ +A + I++
Sbjct: 251 HQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEA--LPAEVGQRWQARFGVDIVD 308
Query: 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAG--LVILDECGVPYPDDQPCVGEVGLFP 560
G TE+ ++ P ++ G L ++ + G GE G
Sbjct: 309 GIGSTEMLHIFLSN---LPGDVRYGTSGKPVPGYRLRLVGDGGQDVAA-----GEPGELL 360
Query: 561 LYLGASDRLL--NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 618
+ +S + N F+G R GD R G GR DD + +
Sbjct: 361 ISGPSSATMYWNNRAKTRDTFQGE-------WTRSGDKYVRNDDGSYTYAGRTDDMLKVS 413
Query: 619 GIKTSSVEIERVCDQADESILETAAISVSPAGG--GPEVLVIFVVLKKGFTSQPDKLKMI 676
GI S EIE ++LE A + V G P+ F+VL+ G L+
Sbjct: 414 GIYVSPFEIESAL-IQHPAVLEAAVVGVEDEDGLIKPKA---FIVLRPGQDI-DTALETE 468
Query: 677 FSKAIQSKLNP 687
+ ++ +L P
Sbjct: 469 LKEHVKDRLAP 479
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 5e-10
Identities = 76/328 (23%), Positives = 116/328 (35%), Gaps = 32/328 (9%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420
I+++SG+TGEPK + + + +++L D + G L ++F
Sbjct: 7 IIYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYGLSQLLTAFR 66
Query: 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480
G TL L R K + +T VP+ + L D+ +R + G
Sbjct: 67 VGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFPSLRYLTNAG 126
Query: 481 ETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQGSLL--QPQAFGAFSTATMTAGLV 537
L L + G TE S Y+ L +P + G A L
Sbjct: 127 GALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTYLPPEELDRRPDSIG---KAIPNVELW 183
Query: 538 ILDECGVPYPDDQPC-VGEVGLF----PL----YLGASDRLLNADHEEVYFRGMPMYKGM 588
++DE D C GEVG Y + E R P+ +
Sbjct: 184 VVDE------DGNRCAPGEVGELVHRGANVMKGYWNDPEAT-----AER-LRPGPLPGEI 231
Query: 589 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS- 647
L GD+++ GY+ GR DD + G + S EIE V + E A I V
Sbjct: 232 VLYT-GDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVICAHPL-VAEAAVIGVPD 289
Query: 648 PAGGGPEVLVIFVVLKKGFTSQPDKLKM 675
P G + +V VV G + +L
Sbjct: 290 PLLG--QAIVAVVVSADGESLDEKELLK 315
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 7e-10
Identities = 110/487 (22%), Positives = 165/487 (33%), Gaps = 109/487 (22%)
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMP 241
++H + + +A++ E R ++Y EL ++ +A L + GD + + +P
Sbjct: 35 TDHAARYPDRIAVIDGERR--------LSYAELDQRADRLAAGLRRLGIKPGDTVLVQLP 86
Query: 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS 301
I + A++ G V S A E+ +A + G P
Sbjct: 87 NVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQH-SGFDYRPFAR 145
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNI 361
+++ P V+ + + P + HP + V
Sbjct: 146 ELVAKHPTLRHVI--VAGEAEHPSVLEAAL---------CHPAGLFTPAPPADAGEVAFF 194
Query: 362 LFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVY--CWPTNLGWVMGPVILF 416
S GTTG PK IP T S+R +AE VY P + +
Sbjct: 195 QLSGGTTGTPKLIPRTHNDYYYSVRASAEICG---FDQQTVYLCALPAAHNFPLSSPGAL 251
Query: 417 SSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSF 476
FL G T+ L E F ++ GVTV VP L
Sbjct: 252 GVFLAGGTVVLAPDPSPELCF-PLIERHGVTVTALVPPLAS------------------- 291
Query: 477 ASTGETSNVDDDLWLSSKAWYNAIIES-----CGGTELSSAYIQ------GSLLQPQAFG 525
LWL + W A + S GG LS+ + G LQ Q FG
Sbjct: 292 ------------LWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVLGCQLQ-QVFG 338
Query: 526 AFSTATMTAGLV-----------ILDECGVPY-PDDQPCVGEVGLFPLYLGASDRLL--- 570
M GLV I+ G P PDD+ V + P+ G LL
Sbjct: 339 ------MAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEVGELLTRG 392
Query: 571 --------NAD-HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
A H F Y R GD+++R GY++V+GR D +N GG K
Sbjct: 393 PYTIRGYYRAPEHNARAFDADGFY------RSGDLVRRDPDGYLVVEGRVKDQINRGGEK 446
Query: 622 TSSVEIE 628
++ E+E
Sbjct: 447 IAAEEVE 453
|
Length = 542 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 77/350 (22%), Positives = 117/350 (33%), Gaps = 88/350 (25%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-------- 412
IL++SGTTG PK + T + + L+ DV P
Sbjct: 86 ILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVL-------LTPLPLFHINAQA 138
Query: 413 VILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTV---LGTVPSLV-----KAWRNTN 463
++++ L GATL L S F V+ G TV LG + +++ +
Sbjct: 139 YSVYAALLVGATLVLLPRFSA--SRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDRDH 196
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN----AIIESCGGTELSSAYIQGSLL 519
L + + +W A+ ++E G TE I
Sbjct: 197 PL-----RFVFGAP-------LPAAIW---PAFEERFGVKLVEGYGMTETGVPIIAP--G 239
Query: 520 QPQAFGAFSTATMTAGLV-------ILDECGVPYPDDQPCVGEV--------GLFPLYLG 564
P G + G I+DE G P + GE+ +F Y G
Sbjct: 240 DPAPPG-------SCGRPRPGVEVRIVDEDGREVPPGEV--GELVVRPRRPWAMFKGYYG 290
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRH-GDIIKRTVGGYIIVQGRADDTMNLGGIKTS 623
+ A +R H GD +R G++ R D + G S
Sbjct: 291 MPEATAKA------WRN--------GWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENIS 336
Query: 624 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKL 673
S E+E A ++ E A ++V G EV VVL+ G T P+ L
Sbjct: 337 SYEVEAAI-LAHPAVAEAAVVAVPSELGEDEVKA-VVVLRPGETLDPEAL 384
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 2e-09
Identities = 107/499 (21%), Positives = 193/499 (38%), Gaps = 70/499 (14%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ ++V AN L + KGD +AI +P +AVI Y +LAG +VV +
Sbjct: 50 ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYT 109
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ +L S AK I D + FP + V A ++ +++ I + + P +
Sbjct: 110 ERELEYQLHDSGAKVILCLDLV------FPRVTNVQSATKIEHVIVTRIADFLPFP---K 160
Query: 329 DLSW-------KDFLSSVDYHPRPNYYSPVYNPVDAVVNIL-----------FSSGTTGE 370
+L + + + V + ++ V V+ V + ++ GTTG
Sbjct: 161 NLLYPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGF 220
Query: 371 PKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLAL 427
PK + T + + T G W + + +V V G ++ S + G + L
Sbjct: 221 PKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVL 280
Query: 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 487
++ F + ++ VT+ P++ A N+ L+ D + IR+ S V+
Sbjct: 281 IPKFDMKMVF-EAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEV 339
Query: 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP 547
+ ++E G TE S L + + G+ GVP+P
Sbjct: 340 QEKFETVTG-GKLVEGYGLTESSPVTHSNFLWEKRVPGSI---------------GVPWP 383
Query: 548 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLR-------------RHG 594
D + + + L + L + E+ +G + KG + G
Sbjct: 384 DTEAMI-------MSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTG 436
Query: 595 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654
D+ G+ V+ R D + G E+E V + ++ + E I V G E
Sbjct: 437 DVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEK-VQEVVTIGVPDPYRG-E 494
Query: 655 VLVIFVVLKKGFTSQPDKL 673
+ FVVLK+G ++L
Sbjct: 495 TVKAFVVLKEGTECSEEEL 513
|
Length = 563 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 112/534 (20%), Positives = 172/534 (32%), Gaps = 169/534 (31%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVR 245
K + A+V D +TY EL+E+ +A L + GD +A+ +
Sbjct: 2 AKHPDRPALVVGGDT--------LTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPD 53
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG 305
A LA + AG V + S A R+ K+L
Sbjct: 54 AYAAILACLKAGAAYVPLDPSQPA----ERIA------------------------KILE 85
Query: 306 AAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS 365
AA A+V P Y ILF+S
Sbjct: 86 AAGPAALV---------------------------ADPDDLAY------------ILFTS 106
Query: 366 GTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-------- 414
G+TG+PK + + S + W D + + G V
Sbjct: 107 GSTGKPKGVQISHANLASFL-----DWMVEDFDLTE------------GDVFSNQAPFSF 149
Query: 415 ------LFSSFLNGATLAL----YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC 464
LF + +GATL + PL +F+++ G+TV +VPS +
Sbjct: 150 DLSVFDLFPALASGATLYVIPKEQIADPLA--LFEFLKEHGLTVWVSVPSFASLLLLSRE 207
Query: 465 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA-----IIESCGGTELSSA--YIQGS 517
L +R+F GE +KA II G TE + A + +
Sbjct: 208 LNPESLPSLRTFLFCGEVLPKKL-----AKALRRRFPNARIINLYGPTEATVAVTAYEVT 262
Query: 518 LLQPQAFG------AFSTATMTAGLVILDECGVPYPDDQP---CVGEVGLFPLYLGASDR 568
+ILDE G P P + + + P YL ++
Sbjct: 263 PEPLSRNEPLPIGYPKPGLR----ALILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPEK 318
Query: 569 LLNADHEEVYFR--GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE 626
+ +F+ G Y R GD++ G ++ GR D + L G + +E
Sbjct: 319 -----TAKAFFQDEGQRWY------RTGDLVYLEDDGLLVYLGRKDFQIKLHGYR---IE 364
Query: 627 IERVCDQADESIL------ETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLK 674
+E + E+ L E A + P G LV FVV K+G LK
Sbjct: 365 LEEI-----EAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGALD-TKALK 412
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 49/205 (23%), Positives = 73/205 (35%), Gaps = 29/205 (14%)
Query: 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTV 244
R+ + A+V+ + TY EL V VA AL D KGD +A +
Sbjct: 21 ARRYPDKTALVFGDRS--------WTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSD 72
Query: 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL 304
+++LA AG V V + E+A L S A+ + P L
Sbjct: 73 AYALLWLACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALA------PTAEAAL 126
Query: 305 GAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFS 364
P+ ++L + + RE W DF V D + IL++
Sbjct: 127 ALLPVDTLILSLV-----LGGREAPGGWLDFAD--WAEAGSVAEPDVELADDDLAQILYT 179
Query: 365 SGTTGEPK-------AIPWTQLSSI 382
SGT PK A+ +S I
Sbjct: 180 SGTESLPKGAMLTHRALIAEYVSCI 204
|
Length = 523 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 88/352 (25%), Positives = 120/352 (34%), Gaps = 93/352 (26%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNL----GWVM 410
D I ++SGTTG PK T + + A L GD P L G V+
Sbjct: 2 DDPALIQYTSGTTGRPKGAMLTHRNVLN-NGYSIARRLGLTEGDRTLVPVPLFHVFGLVL 60
Query: 411 GPVILFSSFLNGATLALYQGSPLERSFGKF--------VQDAGVTVLGTVPSLVKAWRNT 462
G + +S GATL L + KF ++ +T L VP++ A
Sbjct: 61 G---VLASLTAGATLVLME---------KFDPGAALRLIERERITALHGVPTMFIA---- 104
Query: 463 NCLEGLDWTK-----IRSFASTGETSNVDDDLWLSSKAWYN--AIIESCGGTELSSAYIQ 515
LE D+ K +R+ S G + V +L + + I G TE S Q
Sbjct: 105 -LLEHPDFDKFDLSSLRTGISGG--APVPPELVRRIREEFPMAEITTGYGMTETSGVGTQ 161
Query: 516 GSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPC-VGEVGLFPLYLGASDRLLNAD 573
S P + T G + E + PD GEVG
Sbjct: 162 TSGDDP-----YEDRPGTVGRPLPGVEVKIVDPDGGEVPPGEVG---------------- 200
Query: 574 HEEVYFRGMPMYKG---------------MCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 618
E+ RG + KG L GD+ GY+ + GR D + G
Sbjct: 201 --EICVRGYSVMKGYYNDPEATAEAIDADGWLHT-GDLGYMDEDGYLRIVGRIKDMIIRG 257
Query: 619 GIKTSSVEIERVCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKG 665
G EIE + E A + V P EV+ FVVLK G
Sbjct: 258 GENIYPAEIEEALLTHPA-VAEAAVVGV------PDERLGEVVAAFVVLKPG 302
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 4e-08
Identities = 77/353 (21%), Positives = 119/353 (33%), Gaps = 79/353 (22%)
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLG-----WVMGPVIL 415
++++SG+TG PK + + A L GD + W +
Sbjct: 98 VIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVLQFASFSFDASVWE-----I 152
Query: 416 FSSFLNGATLALY----QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 471
F L+GATL L P + +++ +TVL VPSL++A + L
Sbjct: 153 FPPLLSGATLVLAPPEVLRDPEA--LAELLREHRITVLHLVPSLLRALLDALEPAAL--P 208
Query: 472 KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY------IQGSLLQPQAFG 525
+R GE E G L +AY + + +
Sbjct: 209 SLRLVIVGGEA---------LPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDP-D 258
Query: 526 AFSTATMTAG-------LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNADHE 575
++ G + +LDE P P P +G G+ YL + L A+
Sbjct: 259 DLDGGSVPIGRPIANTRVYVLDEDLRPVPVGVPGELYIGGAGVARGYLNRPE--LTAER- 315
Query: 576 EVYF-------RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD-------TMNLGGIK 621
F G +Y R GD+ + G + GRADD + LG
Sbjct: 316 ---FVPDPFGGPGERLY------RTGDLARWLPDGNLEFLGRADDQVKIRGYRIELG--- 363
Query: 622 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLK 674
EIE A + E A + G G + LV +VV G +L+
Sbjct: 364 ----EIEAAL-LAHPGVRE-AVVVAREDGAGEKRLVAYVVPAAGAELDAAELR 410
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 5e-08
Identities = 125/672 (18%), Positives = 210/672 (31%), Gaps = 94/672 (13%)
Query: 26 FDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPPLY 85
F +L QV + G A + + L+P H ++ +YN L
Sbjct: 2903 FRDLLGQVKEQALGAQAHQDLPFEQLVEALQPERSLS-HSPLFQVMYNHQSGERAAAQL- 2960
Query: 86 WFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFR----LFQKFTVEHPEAYWEIALK 141
P L G A + + + S LF TVE +W+ L+
Sbjct: 2961 --PGLHIESFAWDGAATQFDLALDTWESAEGLGASLTYATDLFDARTVERLARHWQNLLR 3018
Query: 142 EISVVFREAPKCI-----LDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKED------ 190
+ + + LD ++ + W + E + HR E+
Sbjct: 3019 GMV---ENPQRSVDELAMLDAEERGQLLEAWNATAAEYPLERGV----HRLFEEQVERTP 3071
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDA-IAIDMPMTVRAVII 249
+ VA+ + E R ++Y EL + +A+ L D + + + ++ V+
Sbjct: 3072 DAVALAFGEQR--------LSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVG 3123
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
LAI+ AG V + + +A L S A+ + +Q + + PL V
Sbjct: 3124 LLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHL-----RLPLAQGV------ 3172
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
Q L + P + + ++++SG+TG
Sbjct: 3173 ------------------QVLDLDRGDENYAEANPAIRTMP-----ENLAYVIYTSGSTG 3209
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429
+PK + + L VGD T + + LF ++GA + L
Sbjct: 3210 KPKGVGIRHSALSNHLCWMQQAYGLGVGDRVLQFTTFSFDVFVEELFWPLMSGARVVL-A 3268
Query: 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL-DWTKIRSFASTGETSNVD-D 487
G R V+ + + + + E T ++ GE D
Sbjct: 3269 GPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPADLQ 3328
Query: 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAF-STATMTAGLVILDECGVPY 546
+ YN G TE + ++ ILD P
Sbjct: 3329 QQVFAGLPLYNLY----GPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILDGSLEPV 3384
Query: 547 PDDQPCVGEVGLFPLYLG----ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG 602
P VG +G LYLG A F P G L R GD+ +
Sbjct: 3385 P-----VGALG--ELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRAD 3437
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVL 662
G I GR D + + G + EIE + E ++V LV +VV
Sbjct: 3438 GVIEYIGRVDHQVKIRGFRIELGEIE-ARLLEHPWVREAVVLAVD-----GRQLVAYVVP 3491
Query: 663 KKGFTSQPDKLK 674
+ + LK
Sbjct: 3492 EDEAGDLREALK 3503
|
Length = 5163 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 6e-08
Identities = 123/520 (23%), Positives = 183/520 (35%), Gaps = 89/520 (17%)
Query: 200 DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGY 258
D D TY EL V AN L ++ GD +A +P AG
Sbjct: 51 DPLDRPET--WTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG- 107
Query: 259 VVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV---LGAAP-LKAIVL 314
+ I +IA LR + AK + T L ++ KV L A P L+ +V
Sbjct: 108 IANPINPLLEPEQIAELLRAAGAKVLVT----LGPFPGTDIWQKVAEVLAALPELRTVVE 163
Query: 315 PAIGNDVGIPLREQDLSWK--------DFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366
+ + P R + DF + + P +S D V + G
Sbjct: 164 VDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGG 223
Query: 367 TTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422
TTG PK T + + A W + L GD L V V + G
Sbjct: 224 TTGMPKLAQHTHGNEV---ANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLARG 280
Query: 423 ATLAL-----YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFA 477
A + L Y+G + +F K V+ + L VP++ A +G D + +R +A
Sbjct: 281 AHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-DGHDISSLR-YA 338
Query: 478 STGET---SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA----FSTA 530
G V ++ I+E G TE + + G+
Sbjct: 339 LCGAAPLPVEVFRRFEAATGV---RIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQ 395
Query: 531 TMTAGLVILDECGVPYPDDQPCVGEVGL--------FPLYLGASDRLLNADHEEVYFRGM 582
+ VILD+ G Y D V EVG+ F Y L A H
Sbjct: 396 RVRV--VILDDAG-RYLRDCA-VDEVGVLCIAGPNVFSGY-------LEAAHN------- 437
Query: 583 PMYKGMCLRRH----GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 638
KG+ L GD+ + GY + GRA D + GG IE E++
Sbjct: 438 ---KGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIE-------EAL 487
Query: 639 LETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKL 673
L A++++ A G P E+ V +V LK G ++ +L
Sbjct: 488 LRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAEL 527
|
Length = 632 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 6e-08
Identities = 78/329 (23%), Positives = 129/329 (39%), Gaps = 43/329 (13%)
Query: 361 ILFSSGTTGEPKA-----------IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWV 409
++++SGTTG PK +P +L + + GDV+ P + W+
Sbjct: 93 LIYTSGTTGPPKGALHGHRVLLGHLPGVELY--------FEL-APRPGDVFWTPADWAWI 143
Query: 410 MGPV-ILFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE 466
G + +L + G + Y+ ER+F ++ GVT P+ +K R
Sbjct: 144 GGLLDVLLPALYFGVPVVAYRMQRFDPERAF-ALMRRYGVTNAFLPPTALKMMRRVGSER 202
Query: 467 GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGA 526
++R+ AS GE+ + W + + E G TE + + L P G+
Sbjct: 203 ARYDLRLRAVASGGESLGEELLEW-ARDELGLTVNEFYGQTEANLVVGNCAALGPARPGS 261
Query: 527 FSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL----NADHEEVYFRGM 582
+ ++D+ G P P GEVG + L N + F G
Sbjct: 262 MGKPVPGHEVAVVDDAGRPVP-----PGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGD 316
Query: 583 PMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETA 642
+ GD+ +R GY+ +GRADD + G + EIE C ++LE A
Sbjct: 317 WL-------LTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEE-CLLKHPAVLEAA 368
Query: 643 AISVSPAGGGPEVLVIFVVLKKGFTSQPD 671
+ V G E++ FVVL +G +
Sbjct: 369 VVGVPDPERG-EIVKAFVVLAEGVEPSDE 396
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 105/470 (22%), Positives = 182/470 (38%), Gaps = 82/470 (17%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLA---------IILAGYV 259
+TY +L E+V + L + SK D + I M T+ +I L+ ++ GY
Sbjct: 93 LTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYS 152
Query: 260 VVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAI----VLP 315
V S+ D I +L ++ GI + I F + A L V+
Sbjct: 153 VKSLIDRI--ETITPKLIITTNYGILNDEII-----TFT--PNLKEAIELSTFKPSNVIT 203
Query: 316 AIGNDV----------GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV--VNILF 363
ND+ IP LSW D + + + + +Y Y PV++ + IL+
Sbjct: 204 LFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYE--YVPVESSHPLYILY 261
Query: 364 SSGTTGEPKAIPWTQLSSIRCTAEGW-AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422
+SGTTG KA+ + + W + I+ + V +++GWV L+ S G
Sbjct: 262 TSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSLG 321
Query: 423 ATLALYQG-----SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFA 477
T +++G +E ++ VT T+P ++ T+ + T IR
Sbjct: 322 NTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDP----EATIIR--- 374
Query: 478 STGETSNVDDDLWLSSKAWYNAI---IES---------CGGTELSSAYIQGSLLQPQAFG 525
S + SN+ ++W + +I IE+ G TE+ Y+ +G
Sbjct: 375 SKYDLSNL-KEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYC-------YG 426
Query: 526 AFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVY 578
+ G+ IL E G ++ +GEV F L + S ++E +
Sbjct: 427 HINIPYNATGVPSIFIKPSILSEDGKELNVNE--IGEVA-FKLPMPPSFATTFYKNDEKF 483
Query: 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 628
+ + G GD+ + GY + R+DD + + G K IE
Sbjct: 484 KQLFSKFPGY--YNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIE 531
|
Length = 647 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 47/223 (21%), Positives = 79/223 (35%), Gaps = 41/223 (18%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
T+++L + +A AL G +A+ ++ V++ A +L G + +
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 329
E +L + + T L K A L I E
Sbjct: 61 NERTNQLEDLDVQLLLTDS---------LLEEKDFQADSLDRIEAAG--------RYETS 103
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 389
LS +D + ++F+SGTTG+PKA+P T + +A G
Sbjct: 104 LS-------------------ASFNMDQIATLMFTSGTTGKPKAVPHT-FRNHYASAVGS 143
Query: 390 AHIDLKVGDVYCWPTNLGW--VMGPVILFSSFLNGATLALYQG 430
+L + W +L + G ILF + GATL +
Sbjct: 144 KE-NLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDK 185
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 94/412 (22%), Positives = 151/412 (36%), Gaps = 89/412 (21%)
Query: 304 LGAAPLKAIVLPA-----IGNDVGIPLREQDLSWKDFLSSVDYH---PRPNYYSPVYNPV 355
L A+ L A++ A +G+D R F++S D P P
Sbjct: 81 LSASELDALLQDAEPRLLLGDDAVAAGRTDVEDLAAFIASADALEPADTP------SIPP 134
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL 415
+ V ILF+SGT+G+PK + ++ +++ TA N G V+G V
Sbjct: 135 ERVSLILFTSGTSGQPKGVMLSE-RNLQQTA-----------------HNFG-VLGRVDA 175
Query: 416 FSSFL--------------------NGATLALYQGSPLERSFGKFV-QDAGVTVLGTVPS 454
SSFL G ++ + G +R+ G+ G+T VP
Sbjct: 176 HSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQ 235
Query: 455 LVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSA-- 512
+ +A+R + + + + G +D L W + I G +S A
Sbjct: 236 MAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILG-----WLDDGIPMVDGFGMSEAGT 290
Query: 513 ----YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV-----GLFPLYL 563
+ +++ +A GA T T ++D+ G P P GE+ L P Y
Sbjct: 291 VFGMSVDCDVIRAKA-GAAGIPTPTVQTRVVDDQGNDCPAGVP--GELLLRGPNLSPGYW 347
Query: 564 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS 623
A + +FR GDI +R G+ V R D GG
Sbjct: 348 RRPQATARAFTGDGWFRT------------GDIARRDADGFFWVVDRKKDMFISGGENVY 395
Query: 624 SVEIERVCDQADE-SILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLK 674
EIE V AD I E A + ++ A G EV + +V G ++++
Sbjct: 396 PAEIEAVL--ADHPGIRECAVVGMADAQWG-EVGYLAIVPADGAPLDLERIR 444
|
Length = 488 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 79/337 (23%), Positives = 119/337 (35%), Gaps = 67/337 (19%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL 415
D IL++SGTTG PK + T + + A +DL GDVY L + P L
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVY-----L--LAAP--L 51
Query: 416 FSSFLNGATL-ALYQGSP--LERSFG-----KFVQDAGVTVLGTVPSLVKAWRNTNCLEG 467
+ + L AL G L F ++ VT VP++ +
Sbjct: 52 YHAAGGLFLLPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFAR 111
Query: 468 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAF-- 524
D + +R + + +L + W+ + + G TE +LL P+ +
Sbjct: 112 YDLSSLRLIIYGA--APMPAELKRAMIEWFGPVFVQGYGMTETGPT---TTLLSPEDWLR 166
Query: 525 --GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG- 581
G+ + I+DE G P GEVG E+ RG
Sbjct: 167 KLGSVGRPVPGVEVRIVDEDGRELP-----PGEVG------------------EIVVRGP 203
Query: 582 --MPMYKGM------CLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 629
M Y LR GD+ GY+ + R D + GG E+E
Sbjct: 204 AVMAGYWNRPEATAEALRDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVEN 263
Query: 630 VCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKG 665
V ++ + A I V G E +V VVL+ G
Sbjct: 264 VLLA-HPAVADVAVIGVPDEEWG--EAVVAVVVLRPG 297
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-07
Identities = 45/183 (24%), Positives = 72/183 (39%), Gaps = 26/183 (14%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL E A L GD +A+ +P + I++ I+ G V V ++ F
Sbjct: 60 TYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFRE 119
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAI-------VLPAIGNDVG 322
E++ L + A+ + D + P+ +V L+ + VLPA
Sbjct: 120 HELSYELNDAGAEVLLALDQLA------PVVEQVRAETSLRHVIVTSLADVLPAEPT--- 170
Query: 323 IPL-------REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIP 375
+PL R D L ++ P P +DA+ + ++ GTTG PK
Sbjct: 171 LPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPA--LDALAALNYTGGTTGMPKGCE 228
Query: 376 WTQ 378
TQ
Sbjct: 229 HTQ 231
|
Length = 567 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 77/324 (23%), Positives = 104/324 (32%), Gaps = 106/324 (32%)
Query: 354 PVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCW-------- 402
D V S G+TG PK IP T S+R + E CW
Sbjct: 180 KSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVE------------ICWLTQQTRYL 227
Query: 403 ---PTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAW 459
P + + F G + L F ++ VTV VP V
Sbjct: 228 CALPAAHNYPLSSPGALGVFYAGGCVVLAPDPSPTDCF-PLIERHKVTVTALVPPAVA-- 284
Query: 460 RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES-----CGGTELSSAYI 514
LW+ + + A + S GG + S+A
Sbjct: 285 -----------------------------LWMQAASKSRADLSSLKLLQVGGAKFSAAAA 315
Query: 515 Q------GSLLQPQAFGAFSTATMTAGLV-----------ILDECGVPY-PDDQPCVGEV 556
+ G LQ Q FG M GLV I G P PDD+ V +
Sbjct: 316 RRVPAVFGCQLQ-QVFG------MAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDD 368
Query: 557 GLFPLYLGASDRLL------------NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 604
P+ G + LL +H F Y GD+++ T GY
Sbjct: 369 HGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFY------YTGDLVRLTPEGY 422
Query: 605 IIVQGRADDTMNLGGIKTSSVEIE 628
I+V GRA D +N GG K ++ EIE
Sbjct: 423 IVVVGRAKDQINRGGEKIAAEEIE 446
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 81/350 (23%), Positives = 124/350 (35%), Gaps = 74/350 (21%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDV-YCWPTNLGWVMG 411
D IL +SGTTG PK +P T L+S R A+ L D VM
Sbjct: 2 DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHK---LTPSDRCLN-------VMP 51
Query: 412 P-------VILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRN 461
V L ++ L G ++ P + S KF + VT VP++ +
Sbjct: 52 LFHIHGLIVSLLATLLAGGSVVC----PPKFSASKFWDDIAKYRVTWYSAVPTIHQILLK 107
Query: 462 T-NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI------ 514
T G ++R F + L K + ++E+ G TE +
Sbjct: 108 TAKPNPGKPPPRLR-FIRSASAPLPPAVLDRLEKRFGVPVLEAYGMTEAAHQIASNPLPP 166
Query: 515 ----QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGA 565
GS+ +P + ILD+ G P P Q GE+ + YL
Sbjct: 167 LVRKPGSVGRPAG----------VEVAILDDDGRPLPPGQ--EGEIVIRGPNVTAGYLNN 214
Query: 566 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV 625
+ A + +FR GD+ GY+ + GR + +N GG K S
Sbjct: 215 PEANREAFRDG-WFRT------------GDLGYLDEDGYLFLTGRIKELINRGGEKISPR 261
Query: 626 EIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLK 674
E+E V + + E V G E + VVL+ ++L+
Sbjct: 262 EVEEVLLRHPA-VAEAVVFGVPDELYG--EEVAAAVVLRADSKVTIEELR 308
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 107/481 (22%), Positives = 176/481 (36%), Gaps = 62/481 (12%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY + +V +ANAL+++ GD +A T R + +Y A+ G V+ ++ +
Sbjct: 27 TYADFYRRVRRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTLNPRLSP 86
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQ 328
+IA + ++ K IF D L PL + P +KA+V+ + L
Sbjct: 87 EQIAYIINHAEDKVIFVDDDFL------PLLEAIAPRLPTVKAVVVYDDADMPETSL-PN 139
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-----R 383
++++ L P Y P + A + ++SGTTG PK + ++ S +
Sbjct: 140 VYAYEELLEEES----PEYEWPELDENTAAG-LCYTSGTTGNPKGVVYSHRSLVLHTLAS 194
Query: 384 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQD 443
+ L D + V + +++ + GA L L S +++
Sbjct: 195 ALPDSLG---LSESDTVLPVVPMFHVNAWGLPYAATMVGAKLVLPGRYLDPASLLDLIEE 251
Query: 444 AGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAII 501
VTV VP++ N G D + +R G L K +I
Sbjct: 252 EKVTVSAGVPTIWLGLLNYLEANGKDLSSLRRVVVGGSAL----PRSLIEKLEERGVEVI 307
Query: 502 ESCGGTELS----SAYIQGSLLQPQAFGAFSTATMTAGLV-------ILDECGVPYPDDQ 550
+ G TE S + ++ L+ G I+D+ G P D
Sbjct: 308 HAWGMTETSPLGTVSRLKPHLVDLPEEEKLE-LRAKQGRPVPGVELRIVDDEGNELPWDG 366
Query: 551 PCVGEV-----GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYI 605
VGE+ + Y + + E R R GD+ GYI
Sbjct: 367 KTVGELVVRGPWVTGSYYK------DPEKTEELTRDGWF-------RTGDVAVIDEDGYI 413
Query: 606 IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKK 664
+ RA D + GG SSVE+E ++ E A + V G E + VVLK
Sbjct: 414 QITDRAKDVIKSGGEWISSVELENALMAH-PAVAEAAVVGVPHEKWG--ERPLAVVVLKP 470
Query: 665 G 665
G
Sbjct: 471 G 471
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 68/283 (24%), Positives = 112/283 (39%), Gaps = 35/283 (12%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY L E+V+ +A+ L + ++G+ +AI + + V LAG V V I
Sbjct: 26 LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINPLLK 85
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFP-----LYSKVLGAAPLKAIVLPAIGNDVGI 323
A ++A L + + T L L + ++ P A
Sbjct: 86 AEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVGDPAHASEGHPGEEPA-- 143
Query: 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR 383
SW L+ D P PV + A IL++SG+TG PK + + ++
Sbjct: 144 -------SWPKLLALGDADPPH----PVIDSDMAA--ILYTSGSTGRPKGVVLSH-RNLV 189
Query: 384 CTAEGWAH-IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ 442
A+ A ++ + D L + G L ++F GAT+ L+ L R K ++
Sbjct: 190 AGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHD-YLLPRDVLKALE 248
Query: 443 DAGVTVLGTVPSLVKAWRNTNCLEGLDWTK-----IRSFASTG 480
G+T L VP L W L LDW + +R ++G
Sbjct: 249 KHGITGLAAVPPL---WAQ---LAQLDWPESAAPSLRYLTNSG 285
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 7e-07
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ EL E+V +A L + GD +AI VI LAI+ AG V V I + +
Sbjct: 6 ITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTSS 65
Query: 269 AREIATRLRVSKAKGIFTQD 288
E+A L S A+ +F +D
Sbjct: 66 PEEVAYILNDSGARVVFVED 85
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 7e-07
Identities = 120/511 (23%), Positives = 176/511 (34%), Gaps = 135/511 (26%)
Query: 211 TYKELREQVMLVAN-ALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY L +AN L GD +A +P IIYLA + G V V + S+
Sbjct: 51 TYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWRE 110
Query: 270 REIATRLRVSKAKGIFT---------QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND 320
E+ L +AK F D IL + P +++G L PA
Sbjct: 111 AELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLA----PAT--- 163
Query: 321 VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPV----DAVVNILFSSGTTGEPKAIPW 376
LS ++ Y P+ + D + +LF+SGT G PK +
Sbjct: 164 -------SSLSLSQIIAD---------YEPLTTAITTHGDELAAVLFTSGTEGLPKGVML 207
Query: 377 TQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL 433
T L+S R YC NL W V + + L AT L+
Sbjct: 208 THNNILASER---------------AYCARLNLTW--QDVFMMPAPLGHATGFLH----- 245
Query: 434 ERSFGKFVQDAGVT---VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLW 490
GVT ++G L+ + CL L+ + R G T + D L
Sbjct: 246 -----------GVTAPFLIGARSVLLDIFTPDACLALLE--QQRCTCMLGATPFIYDLLN 292
Query: 491 LSSKAWYNAIIES-----CGGTELSSAYIQ-----GSLLQPQAFGAFSTATMTAGLVILD 540
L K + + + CGGT + + G L +G ST + +V LD
Sbjct: 293 LLEKQPAD--LSALRFFLCGGTTIPKKVARECQQRGIKLL-SVYG--STESSPHAVVNLD 347
Query: 541 EC--------GVPYP-------DDQ----PCVGEVG--------LFPLYLGASDRLLNAD 573
+ G D+ P G G +F YL + A
Sbjct: 348 DPLSRFMHTDGYAAAGVEIKVVDEARKTLPP-GCEGEEASRGPNVFMGYLDEPELTARAL 406
Query: 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633
EE ++ Y GD+ + GYI + GR D + GG SS E+E + Q
Sbjct: 407 DEEGWY-----YS-------GDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQ 454
Query: 634 ADESILETAAISVSPAGGGPEVLVIFVVLKK 664
I + +++ G E +VVLK
Sbjct: 455 H-PKIHDACVVAMPDERLG-ERSCAYVVLKA 483
|
Length = 547 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 109/516 (21%), Positives = 176/516 (34%), Gaps = 108/516 (20%)
Query: 185 HRRKED------NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDA-IA 237
H+ ED VA+V+ E +TY EL + +A+ L + + +
Sbjct: 1577 HQLIEDQAAATPEAVALVFGEQE--------LTYGELNRRANRLAHRLIALGVGPEVLVG 1628
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
I + ++ V+ LAI+ AG V + + +A + S + + TQ + +
Sbjct: 1629 IAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQA---RL 1685
Query: 298 PLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNP-VD 356
PL L+++VL +Q+ W ++ + N P N
Sbjct: 1686 PL------PDGLRSLVL------------DQEDDW------LEGYSDSN---PAVNLAPQ 1718
Query: 357 AVVNILFSSGTTGEPKA-----------IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTN 405
+ ++++SG+TG PK + TQ + A+ DV W
Sbjct: 1719 NLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVVLQFTSFAFDVSVWE-- 1776
Query: 406 LGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVKAW--- 459
LF +NGA L + R + +Q VT L VPS+++
Sbjct: 1777 ---------LFWPLINGARLVIAPPG-AHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQM 1826
Query: 460 --RNTNCLEGLDWTKIRSFASTGETSNVDD-DLWLSSKAWYNAIIESCGGTE--LSSAYI 514
+ + +R GE V+ WL + G TE + +
Sbjct: 1827 DEQVEHP------LSLRRVVCGGEALEVEALRPWLERLPD-TGLFNLYGPTETAVDVTHW 1879
Query: 515 QGSLLQPQAFGAFSTATMTA--GLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNA 572
+ + A ILD P P GE LYLG L
Sbjct: 1880 TCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVP--IGVAGE-----LYLGG-VGLARG 1931
Query: 573 DHEEV-----YFRGMPMYK-GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE 626
F P G L R GD+ + G I GR D + + G + E
Sbjct: 1932 YLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGE 1991
Query: 627 IE-RVCDQADESILETAAISVSPAGGGPEVLVIFVV 661
IE R+ +Q + E I+ A G + LV +VV
Sbjct: 1992 IEARLREQGG--VREAVVIAQDGANG--KQLVAYVV 2023
|
Length = 3956 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 116/547 (21%), Positives = 191/547 (34%), Gaps = 86/547 (15%)
Query: 151 PKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLM 210
+ R SK G W ++ + + + D +R+ AV
Sbjct: 3 AVLLAPRRAASKAAGLWRDRTINDHFDAAV-----ANCPDKPALTAYRDG---HGAVRRF 54
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
+Y+EL +V +A L + +GD ++ +P +YLA G V+ + F
Sbjct: 55 SYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFRE 114
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGI----- 323
RE++ L + +K +F + RG + ++ P L+ +V+ D
Sbjct: 115 RELSFMLNHADSK-VFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLM 173
Query: 324 -PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---L 379
P R+ L+ PRP SP D V ++++SGTTGEPK + T
Sbjct: 174 TPERDDTPDAAAILAG----PRP---SP-----DDVTQLIYTSGTTGEPKGVMHTANTLF 221
Query: 380 SSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGK 439
S+I AE ++L GDV + P+ + F+ G + L
Sbjct: 222 SNIHPYAE---RLELGGGDVILMAS-------PMAHQTGFMYGLMMPL------------ 259
Query: 440 FVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIR-SFASTGETSNVDDDLWLSSKAWYN 498
+L L W E + T + + AST +++ + S +
Sbjct: 260 --------ILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPS 311
Query: 499 AIIESCGGTELSSAYIQGS-----LLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCV 553
C G + ++ + L A+G +T D +P
Sbjct: 312 LFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLP 371
Query: 554 G-EVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRH------------GDIIKRT 600
G EV + +L + + RG + G R H GD+ +
Sbjct: 372 GVEVKVID---ANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNSTDAEGWFDTGDLAFQD 428
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
GYI + GR+ D + GG VEIE + Q + AI P E V
Sbjct: 429 AEGYIRINGRSKDVIIRGGENIPVVEIENLLYQ--HPAVAQVAIVAYPDERLGERACAVV 486
Query: 661 VLKKGFT 667
V K G T
Sbjct: 487 VPKPGCT 493
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 65/289 (22%), Positives = 102/289 (35%), Gaps = 62/289 (21%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY ++ VA L + +GD + + +P V+ +L G V + +
Sbjct: 51 YTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYT 110
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + + S AK I TQ K+ G A + + I + L
Sbjct: 111 PAEIAKQAKASGAKLIITQS---------CYVDKLKGLAEDDGVTVVTIDDPPEGCLHFS 161
Query: 329 DLSWKDF--LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA 386
+L+ D L V+ P D VV + +SSGTTG PK + T + A
Sbjct: 162 ELTQADENELPEVEISP------------DDVVALPYSSGTTGLPKGVMLTHKGLVTSVA 209
Query: 387 EGWAHID-------LKVGDV----------YCWPTNLGWVMGPVILFSSFLNGATLALYQ 429
+ +D DV Y + +L GA + +
Sbjct: 210 Q---QVDGENPNLYFHSDDVILCVLPMFHIYSLNS---------VLLCGLRVGAAILIMP 257
Query: 430 ----GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIR 474
G+ LE +Q VT+ VP +V A + +E D + IR
Sbjct: 258 KFEIGALLE-----LIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIR 301
|
Length = 537 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 109/478 (22%), Positives = 165/478 (34%), Gaps = 62/478 (12%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY ELR +V VA L +A+ P +V AVI LA+ G V +
Sbjct: 29 LTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRLK 88
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + I RG + + V+ A V+ AI G +R
Sbjct: 89 PAEIA--------------ELIKRG----EMTAAVIAVD---AQVMDAI-FQSGSGVRVL 126
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKA--IPWTQLSS---IR 383
L L P P P + ++SGTTG PK IP S
Sbjct: 127 ALGDLVGLG-EPESAGPPIEDPPREPEQPAF-VFYTSGTTGLPKGAVIPQRAAESRVLFM 184
Query: 384 CTAEGWAHIDLKVGDVYCWPTNLGWVMG--PVILFSSFLNGATLALYQGSPLERSFGKFV 441
T G H +V L V+G V++ + L+G + + + P + K +
Sbjct: 185 STQAGLRHGR---HNVVLGLMPLYHVIGFFAVLVAALALDGTYVVVEEFDPADAL--KLI 239
Query: 442 QDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501
+ VT L P+ + A L + G T D L ++ +
Sbjct: 240 EQERVTSLFATPTHLDALAAAAEGAPLKLDSLEHVTFAGATMP-DAVLERVNQHLPGEKV 298
Query: 502 ESCGGTE-LSSAYI----QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV 556
G TE ++S Y+ G+ ++P G FS + DE + + V
Sbjct: 299 NIYGTTEAMNSLYMRDPRTGTEMRP---GFFSEVRIVRIGGSPDEALPNGEEGELVVAAA 355
Query: 557 -GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTM 615
F YL + Y R D+ G + + GR DD +
Sbjct: 356 DATFTGYLNQPQATAEKLQDGWY-------------RTSDVAVVDPSGTVRILGRVDDMI 402
Query: 616 NLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKL 673
GG E+ERV +A + E I + G + + VV ++G T D L
Sbjct: 403 ISGGENIHPSEVERVLGRA-PGVTEVVVIGLPDERWG-QSVTACVVPREGETLSADAL 458
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL E +A L + +KG +AI MP ++ + A++ AGYVVV++ +
Sbjct: 49 ITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVNPLYT 108
Query: 269 AREIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI 323
RE+ +L+ S A+ I ++F +VL +K +V+ ++G+ +G
Sbjct: 109 PRELEHQLKDSGAEAIVVLENFA-------TTVQQVLAKTAVKHVVVASMGDLLGF 157
|
Length = 557 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 123/561 (21%), Positives = 199/561 (35%), Gaps = 128/561 (22%)
Query: 156 DRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKEL 215
R S G W ++ + + C+ D T R A TY+EL
Sbjct: 10 PRRAASIAAGHWHDRTINDDLDACV-----ASCPDKTAVTAVRLGT---GAPRRFTYREL 61
Query: 216 REQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIAT 274
V VA L + +GD ++ +P ++YLA G V+ + F RE++
Sbjct: 62 AALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSF 121
Query: 275 RLRVSKAKG-IFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWK 333
L+ +++K + + F R F + P LPA+ + V + + S++
Sbjct: 122 MLKHAESKVLVVPKTF-----RGFDHAAMARRLRPE----LPALRHVVVVG-GDGADSFE 171
Query: 334 DFLSSVDYHPRPNYYSPVYNP---VDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAE 387
L + + P+ + + D V ++++SGTTGEPK + T +++I AE
Sbjct: 172 ALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAE 231
Query: 388 GWAHIDLKVGDVYCWPTNLGWVMG-------PVILFSSFLNGATLALYQGSPLERSFGKF 440
+ L DV + + G PV+L GAT A+ Q +
Sbjct: 232 ---RLGLGADDVILMASPMAHQTGFMYGLMMPVML------GAT-AVLQDIWDPARAAEL 281
Query: 441 VQDAGVT-VLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499
++ GVT + + P L R G + +R+F
Sbjct: 282 IRTEGVTFTMASTPFLTDLTRAVK-ESGRPVSSLRTFL---------------------- 318
Query: 500 IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA------GLVIL-------------D 540
C G A I G+L++ +A A ++A G V L D
Sbjct: 319 ----CAG-----APIPGALVE-RARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTD 368
Query: 541 ECGVPY-------PDDQPC-VGEVG--------LFPLYLGASDRLLNADHEEVYFRGMPM 584
C +P D P G++G F YL LN + +F
Sbjct: 369 GCPLPGVEVRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQ--LNGTDADGWFDT--- 423
Query: 585 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644
GD+ + GYI + GR+ D + GG VEIE + + + AI
Sbjct: 424 ---------GDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPA--IAQVAI 472
Query: 645 SVSPAGGGPEVLVIFVVLKKG 665
P E FVV + G
Sbjct: 473 VAYPDERLGERACAFVVPRPG 493
|
Length = 547 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 61/288 (21%), Positives = 97/288 (33%), Gaps = 83/288 (28%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
+ A++ +TY EL + +A AL + GD +A+ MP ++
Sbjct: 2 DATAVIDGAGT--------LTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVA 53
Query: 250 YLAIILAGYVVVSI-ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP 308
L I+LAG V I D A R A L + A+ + T
Sbjct: 54 VLGILLAGAAYVPIDPDQPAER-RAAILARAGARAVLTDP------------------GL 94
Query: 309 LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 368
+ P + D + P D + ++F+SG+T
Sbjct: 95 AQPEEAPDLLVVA-------DDAAAA---------ESPAPPPPRVDPDDLAYVIFTSGST 138
Query: 369 GEPKAIPWTQ---LSSIRCTAEGWA-------------HIDLKVGDVYCWPTNLGWVMGP 412
GEPK + T +++I + H DL V D++
Sbjct: 139 GEPKGVMITHRAAVNTILDVNRRFGVGPADRVLALSALHFDLSVYDIFG----------- 187
Query: 413 VILFSSFLNGATLALYQGSPLER----SFGKFVQDAGVTVLGTVPSLV 456
S+ GA L L R + + VQ GVTV +VP+L+
Sbjct: 188 --ALSA---GAALVL--PDEARRRDPDHWAELVQRHGVTVWNSVPALM 228
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 53/205 (25%), Positives = 81/205 (39%), Gaps = 41/205 (20%)
Query: 211 TYKELREQVMLVANALDTMFS--KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+Y+EL E+ +A L KGD + + M + + VI Y AI+ A VVV +
Sbjct: 37 SYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVNPMNR 96
Query: 269 AREIATRLRVSKAK-GIFTQDFILRGGRKFPLYSKVL---GAAPLK-AIV------LPAI 317
E+A + S A+ I + L KV G L+ IV LPA
Sbjct: 97 EEELAHYVTDSGARVAIVGSE----------LAPKVAPAVGNLRLRHVIVAQYSDYLPAE 146
Query: 318 GND-------VGIPLR----EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366
PL+ ++WK+ L++ P P+ P D + + ++SG
Sbjct: 147 PEIAVPAWLRAEPPLQALAPGGVVAWKEALAA-GLAPPPHTAGP-----DDLAVLPYTSG 200
Query: 367 TTGEPKAIPWTQLSSIRCTAEGWAH 391
TTG PK T ++ A G
Sbjct: 201 TTGVPKGCMHTH-RTVMANAVGSVL 224
|
Length = 546 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 97/485 (20%), Positives = 172/485 (35%), Gaps = 94/485 (19%)
Query: 209 LMTYKELREQVMLVANAL--DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266
MTYK+L E V VA L + KG+ IAI ++ +++ AI + V +
Sbjct: 27 EMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIR 86
Query: 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLR 326
E+ +L+ S +F + + + + + V I
Sbjct: 87 LTENELIFQLKDSGTTVLFVE----------KTFQNMALSMQKVSYVQRVI--------- 127
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA 386
L ++ N+ A I ++SGTTG+PK TQ +
Sbjct: 128 -----SITSLKEIEDRKIDNFVEK---NESASFIICYTSGTTGKPKGAVLTQENMFWNAL 179
Query: 387 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFS--SFLNGATLALYQGSPLERSFGKFVQDA 444
IDL + D L + +G + LF+ + G + + + ++ ++
Sbjct: 180 NNTFAIDLTMHDRSIVLLPL-FHIGGIGLFAFPTLFAGGVIIVPRKFEPTKAL-SMIEKH 237
Query: 445 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504
VTV+ VP++ +A N + E + +R F + G
Sbjct: 238 KVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPE------------------- 278
Query: 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVG---LFPL 561
EL +I L Q FG T T ++ +E D + VG +G LF
Sbjct: 279 ---ELMREFIDRGFLFGQGFGM--TETSPTVFMLSEE------DARRKVGSIGKPVLFCD 327
Query: 562 YLGASDRLLNADHE--------EVYFRGMPMYKGMCLRRH-------------GDIIKRT 600
Y L++ + E+ RG + K R GD+ +
Sbjct: 328 Y-----ELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVD 382
Query: 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
G++ + GR + + GG +E+E+V ++ + E A + G E+ + F+
Sbjct: 383 EDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLS-DVYEVAVVGRQHVKWG-EIPIAFI 440
Query: 661 VLKKG 665
V K
Sbjct: 441 VKKSS 445
|
Length = 496 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 116/523 (22%), Positives = 198/523 (37%), Gaps = 104/523 (19%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245
+E + +A++W +D +E + T+ +L++ AN + KGD + +T++
Sbjct: 28 DEEPDKLALIWCDDDGEEK---IFTFGDLKDYSNKAANFFKALGIGKGDTVM----LTLK 80
Query: 246 AVIIYLAIILA----GYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS 301
+ +LA G + + A++I R+ + K I + G P +
Sbjct: 81 RRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMI-----VCIGEDGVPEH- 134
Query: 302 KVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVD----YHPRPNYYSPVYNPVDA 357
+ AAP + VG P+ E W DF ++ RP D
Sbjct: 135 -IDEAAPECGSPTLLV--LVGDPVPE---GWIDFDKEIENASPDFERPT--GNDATCNDD 186
Query: 358 VVNILFSSGTTGEPKAIPWTQLSSIR--CTAEGWAHIDLKVGDVYCWPTNLGW---VMGP 412
++ + F+SGTTG PK + + TA+ W ++K G ++ + GW V G
Sbjct: 187 ILLVYFTSGTTGMPKMVEHDHTYPLGHIVTAKYWQ--NVKEGGLHLTVADTGWGKAVWGK 244
Query: 413 VILFSSFLNGATLALYQGSPLERSFGKFVQDA--------GVTVLGTVPS----LVKAWR 460
L+ ++ GA + +Y + KF GVT P+ L+K
Sbjct: 245 --LYGQWIAGAAVFVY-------DYDKFDPKNLLEKIEKYGVTTFCAPPTIYRFLIKE-- 293
Query: 461 NTNCLEGLDWTKIRSFASTGETSNVDD-DLWLSSKAWYNAIIESCGGTELSSAYIQGSLL 519
L D + +R + GE N + + + ++E G TE + +
Sbjct: 294 ---DLSKYDLSSLRYCTTAGEPLNPEVFNTFKEKTGI--KLMEGFGQTETTLTIATFPWM 348
Query: 520 QPQAFGAFSTATMTAGLVILDECGVPYPDDQPC-VGE-------------VGLFPLYLGA 565
+P+ G+ + + I+D PD + C VGE +GLF Y
Sbjct: 349 EPKP-GSMGKPSPGYDIDIID------PDGKSCEVGEEGEIVIRTSDGKPLGLFMGYYRD 401
Query: 566 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV 625
+R H+ Y GD GY+ GRADD + G +
Sbjct: 402 PERTAEVWHDGYYHT-------------GDTAWMDEDGYLWFVGRADDLIKSSGYRIGPF 448
Query: 626 EIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFT 667
E+E Q ++LE A V P G +V+ +VL KG+
Sbjct: 449 EVESALIQ-HPAVLECAVTGVPDPIRG--QVVKATIVLTKGYE 488
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 211 TYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
T+ EL+E+ AN L D +GD +A+ +P + L I G V +
Sbjct: 2 TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61
Query: 270 REIATRLRVSKAKGIFTQD 288
++I RL + A+ I T
Sbjct: 62 KDIRYRLERAGARAIVTSA 80
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 118/533 (22%), Positives = 187/533 (35%), Gaps = 130/533 (24%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY EL +QV A L + GD +AI +P + ++ + A++ G VVV +
Sbjct: 58 TTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHNPLYT 117
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV-------LPAIGN-D 320
A E+ A+ D + P ++ PL+ IV +P +
Sbjct: 118 AHELEHPFEDHGARVAIVWD------KVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLA 171
Query: 321 VGIPL------REQ-------DLSWKDFLSS-------VDYHPRPNYYSPVYNPVDAVVN 360
+ +P+ R + W+ + + HPRP A+
Sbjct: 172 LRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDV------AL-- 223
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLG----WVMGPVILF 416
IL++SGTTG+PK T + A+G A W LG V+ + +F
Sbjct: 224 ILYTSGTTGKPKGAQLTHRNLFANAAQGKA-----------WVPGLGDGPERVLAALPMF 272
Query: 417 SSF---LNGATLALYQGSPLERSFGKF----VQDA----GVTVLGTVPSLVKAWRNTNCL 465
++ L TLA+ G L + DA T L VP L +
Sbjct: 273 HAYGLTLCL-TLAVSIGGELVL-LPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEE 330
Query: 466 EGLDWTKIR---SFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQ 522
G+D + +R S A S V +LW ++E G TE S P
Sbjct: 331 RGVDLSGVRNAFSGAMALPVSTV--ELWEKLTGGL--LVEGYGLTETS----------PI 376
Query: 523 AFGAFSTATMTAGLVILDECGVPYPD-------------DQPCVGEVG--------LFPL 561
G + G V GVP+PD P GE G +F
Sbjct: 377 IVGNPMSDDRRPGYV-----GVPFPDTEVRIVDPEDPDETMP-DGEEGELLVRGPQVFKG 430
Query: 562 YLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
Y + + + + R GD++ G+I + R + + GG
Sbjct: 431 YWNRPEETAKSFLDGWF-------------RTGDVVVMEEDGFIRIVDRIKELIITGGFN 477
Query: 622 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLK 674
E+E V + + + A + + P G E +V VVL+ G P+ L+
Sbjct: 478 VYPAEVEEVLREHP-GVEDAAVVGL-PREDGSEEVVAAVVLEPGAALDPEGLR 528
|
Length = 573 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 27/182 (14%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
T+++L + V +A L + GD + I P ++ A G ++V+I ++
Sbjct: 46 YTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYR 105
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-----------------LKA 311
A E+ L S + + D + ++ + P L+
Sbjct: 106 ASELEYALGQSGVRWVICAD----AFKTSDYHAMLQELLPGLAEGQPGALACERLPELRG 161
Query: 312 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP 371
+V A G + + + +S R D +NI ++SGTTG P
Sbjct: 162 VVSLAPAPPPGFLAWHELQARGETVSREALAERQASLDR-----DDPINIQYTSGTTGFP 216
Query: 372 KA 373
K
Sbjct: 217 KG 218
|
Length = 558 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 105/458 (22%), Positives = 160/458 (34%), Gaps = 77/458 (16%)
Query: 233 GDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILR 292
GD +A+ M V+ LA A VVV + + E R + + A+ + D
Sbjct: 68 GDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLI-DADGP 126
Query: 293 GGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV- 351
R P PL V G G D P P +P
Sbjct: 127 HDRAEPTTR----WWPLTVNVGGDSGPSGGTLSVHLD---------AATEPTPATSTPEG 173
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGD--VYCWPTNL 406
P DA+ I+F+ GTTG PK +PWT SS+R G+ L D V P
Sbjct: 174 LRPDDAM--IMFTGGTTGLPKMVPWTHANIASSVRAIITGY---RLSPRDATVAVMPLYH 228
Query: 407 GWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE 466
G + +L + GA L +G +F ++ G T VP++ + E
Sbjct: 229 GHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATE 288
Query: 467 GLDWTK-----IRSFAS--TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL 519
IRS ++ T ET+ + + ++ + G TE A Q +
Sbjct: 289 PSGRKPAALRFIRSCSAPLTAETAQALQTEFAA------PVVCAFGMTE---ATHQVTTT 339
Query: 520 QPQAFGAFSTATMTAGLVILD---ECGVPYPDDQPC-VGEVGLFPLYLGASDRLLNADHE 575
Q + G ++ GLV + + D P G VG
Sbjct: 340 QIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVG------------------ 381
Query: 576 EVYFRGMPMYKGMC-------------LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT 622
EV+ RG + +G R GD+ + G + ++GR + +N GG K
Sbjct: 382 EVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKI 441
Query: 623 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFV 660
S +E V +++E A V G V + V
Sbjct: 442 SPERVEGVLASHP-NVMEAAVFGVPDQLYGEAVAAVIV 478
|
Length = 534 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 79/346 (22%), Positives = 119/346 (34%), Gaps = 77/346 (22%)
Query: 366 GTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLN 421
GTTG PK + + + A W L GDV L V G ++ +
Sbjct: 12 GTTGAPKLARHSHRNEV---ANAWMAALLSGLGPGDVLLNGLPLFHVGGAIVTGLAPLAR 68
Query: 422 GATLAL-----YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSF 476
GAT+ L ++ + +F K V+ VT+L VP+++ A L D + +R +
Sbjct: 69 GATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVP-LGDADISSLR-Y 126
Query: 477 ASTGET---SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMT 533
A TG V + ++E G TE + S
Sbjct: 127 ALTGAAPLPVEVARRFEAVTGV---PVVEGYGMTEGTGV---------------SAINPR 168
Query: 534 AGLVILDECGVPYP--------------DDQPC-VGEVG--------LFPLYLGASDRLL 570
G G+ P + C GEVG +FP YL +
Sbjct: 169 GGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLNDAH--- 225
Query: 571 NADH--EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 628
NA E+ + GD+ + GY+ + GRA D + GG IE
Sbjct: 226 NAGARLEDGWLNT------------GDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIE 273
Query: 629 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLK 674
++ AA+ A G E+ V +V LK G T +L
Sbjct: 274 EAL-LRHPAVALAAAVGRPDAYAG-ELPVAYVQLKPGATVTEGELL 317
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
T++EL ++V +A AL GD + I M V LA + G + V +
Sbjct: 43 TTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFRLT 102
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + A + T+ + P+ + V PL + V+ A G +
Sbjct: 103 PPEIAFLVSDCGAHVVVTEAALA------PVATAVRDIVPLLSTVVVA-----GGSSDDS 151
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK 372
L ++D L+ +PV P D+ I+++SGTTG PK
Sbjct: 152 VLGYEDLLAEAGPAH-----APVDIPNDSPALIMYTSGTTGRPK 190
|
Length = 542 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 9e-05
Identities = 36/173 (20%), Positives = 60/173 (34%), Gaps = 34/173 (19%)
Query: 210 MTYKELREQVMLVANALDTMF-----SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264
+TY EL + +N L +GD +AI + +Y A +G I
Sbjct: 12 VTYGELEAR----SNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPIN 67
Query: 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIP 324
A EIA + S AK + +++ P +L + V
Sbjct: 68 WHLTAAEIAYIVDDSGAKVLIVS------AALADTAAELAAELPAGVPLLLVVAGPVP-- 119
Query: 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV---NILFSSGTTGEPKAI 374
++ + ++ P P+ ++L+SSGTTG PK I
Sbjct: 120 ------GFRSYEEALAAQPDT--------PIADETAGADMLYSSGTTGRPKGI 158
|
Length = 502 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 19/177 (10%)
Query: 203 DESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVV 260
D S ++Y EL+ V +A L + +GD + + +P +V +I+LA++ G +V
Sbjct: 60 DSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIV 119
Query: 261 VSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND 320
++ S + EI R+ FT P + L + I +P +
Sbjct: 120 TTMNPSSSLGEIKKRVVDCSVGLAFTS----------PENVEKLSPLGVPVIGVPENYDF 169
Query: 321 VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT 377
+ D+ P+P + D V I++SSGTTG K + T
Sbjct: 170 DSKRIEFPKFYEL-IKEDFDFVPKP----VIKQ--DDVAAIMYSSGTTGASKGVVLT 219
|
Length = 560 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 41/200 (20%), Positives = 71/200 (35%), Gaps = 32/200 (16%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA---D 265
+TY EL EQ +A L + GD +A+ + R + LA+ AG V I
Sbjct: 75 LTYAELDEQSNALARGLLALGVRAGDGVAV-LARNHRGFV--LALYAAGKVGARIILLNT 131
Query: 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPL 325
F+ ++A K + D ++ +L A P L A G +
Sbjct: 132 GFSGPQLAEVAAREGVKALVYDD----------EFTDLLSALPPDLGRLRAWGGNP-DDD 180
Query: 326 REQDLSWKDFLSSVDYH-----PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS 380
+ + + P+P + ++ +SGTTG PK P + S
Sbjct: 181 EPSGSTDETLDDLIAGSSTAPLPKPPKPGGI---------VILTSGTTGTPKGAPRPEPS 231
Query: 381 SIRCTAEGWAHIDLKVGDVY 400
+ A + + + G+
Sbjct: 232 PLAPLAGLLSRVPFRAGETT 251
|
Length = 549 |
| >gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 64/267 (23%), Positives = 98/267 (36%), Gaps = 46/267 (17%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVV--VSIADS 266
+TY E + V +A AL D G + I ++ ++ LA + AG VS A S
Sbjct: 81 VTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYS 140
Query: 267 FAAREIATRLR----VSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA----IVLPAIG 318
+ + A +L+ + K + +F Q +++ L A L V
Sbjct: 141 LMSHDHA-KLKHLFDLVKPRVVFAQSG--------APFARALAALDLLDVTVVHVTGPGE 191
Query: 319 NDVGIPLREQDLSWKDFLSSVDY-HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT 377
I DL+ ++V D V LF+SG+TG PKA+ T
Sbjct: 192 GIASIAFA--DLAATPPTAAVAAAIAAITP--------DTVAKYLFTSGSTGMPKAVINT 241
Query: 378 Q--LSSIRCTAEGWAHIDLKVGDVYCWPTNLGW-----VMGPVILFSSFL-NGATLALYQ 429
Q + + E P +L W MG F+ L G TL +
Sbjct: 242 QRMMCANIAMQEQ-LRPREPDPPP---PVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDD 297
Query: 430 GSPLERSFGKFVQ---DAGVTVLGTVP 453
G PL F + ++ + TV G VP
Sbjct: 298 GKPLPGMFEETIRNLREISPTVYGNVP 324
|
Length = 624 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 112/481 (23%), Positives = 183/481 (38%), Gaps = 68/481 (14%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+ Y EL + +A+AL + + M ++ V+ LAI+ AG V + +
Sbjct: 537 LDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEYP 596
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A +A L S + + +Q + GRK PL AA ++ + L
Sbjct: 597 AERLAYMLEDSGVQLLLSQSHL---GRKLPL------AAGVQVLDLDRPA---------- 637
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK--AIPWTQLSSIRCTA 386
+W + S + N + Y ++++SG+TG+PK LS+ C
Sbjct: 638 --AWLEGYSEENPGTELNPENLAY--------VIYTSGSTGKPKGAGNRHRALSNRLC-- 685
Query: 387 EGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQ-- 442
W L VGD T + + F ++GA L + R K V+
Sbjct: 686 --WMQQAYGLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVV-AAPGDHRDPAKLVELI 742
Query: 443 -DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501
GV L VPS+++A+ + T +R +GE D + +K +
Sbjct: 743 NREGVDTLHFVPSMLQAFLQDEDVA--SCTSLRRIVCSGEALPADAQEQVFAKLPQAGLY 800
Query: 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL--VILDECGVPYPDDQPCVGEV--- 556
G TE + + ++ + + A L ILD P P +GE+
Sbjct: 801 NLYGPTEAAIDVTHWTCVE-EGGDSVPIGRPIANLACYILDANLEPVP--VGVLGELYLA 857
Query: 557 --GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDT 614
GL Y G L A+ F P G + R GD+ + G I GR D
Sbjct: 858 GRGLARGYHGRPG--LTAER----FVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQ 911
Query: 615 MNLGGIKTSSVEIE-RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKL 673
+ L G++ EIE R+ + + E A ++V G + LV +VVL+ + L
Sbjct: 912 VKLRGLRIELGEIEARLLEH--PWVREAAVLAV----DGKQ-LVGYVVLESEGGDWREAL 964
Query: 674 K 674
K
Sbjct: 965 K 965
|
Length = 5163 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 628
GD++ GYI V GR D +N GG K ++ EIE
Sbjct: 414 GDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIE 448
|
Length = 536 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 592 RHGDIIKRTVGGYIIVQGRA-DDTMNLGGIKTSSVEIERVCDQADESILETAAISV-SPA 649
+ GD+ GY + GR DD + GG K S++EIE + E A I V P
Sbjct: 317 KTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEALL-EHPGVAEVAVIGVPDPD 375
Query: 650 GGGPEVLVIFVVLKKG 665
G E +V VV + G
Sbjct: 376 WG--EAVVAVVVPEAG 389
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 30/191 (15%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYL 251
VA+V + R +TY EL E+ +A+ L GD + I + V L
Sbjct: 20 VALVCGDRR--------LTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAML 71
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF-PLYSKVLGAAP-L 309
A V V++ + E+ L S A + + R+F P ++VL P L
Sbjct: 72 GAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYE-------REFAPRVAEVLPRLPKL 124
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP--VYNPVDAVVNILFSSGT 367
+ +V + + G L + ++D L++ SP +Y +L++ GT
Sbjct: 125 RTLV--VVEDGSGNDLLPGAVDYEDALAAGSPERDFGERSPDDLY--------LLYTGGT 174
Query: 368 TGEPKAIPWTQ 378
TG PK + W Q
Sbjct: 175 TGMPKGVMWRQ 185
|
Length = 533 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 24/166 (14%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
T+ ++ +Q +A AL ++ GD IAI +I LAI +AG+V V + + A
Sbjct: 8 TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTA 67
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV---LPAIGNDVGIPLR 326
I L S AK +F K+ +KA V LP I L+
Sbjct: 68 ETIRYVLEHSDAKALFV--------------GKLDDWDAMKAGVPEGLPTIILFPYSTLK 113
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK 372
+ W D L++ P P+ P + + I+++SGTTG+PK
Sbjct: 114 DHY-KWDDLLAA----TEPLQGRPLPEP-EDLATIVYTSGTTGQPK 153
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 609 GRADDTMNLGGIKTSSVEIERVCDQADESILE---TAAISVSPAGGGPEVLVIFVVLKKG 665
GR D + + G+ + EIE +Q +E TAA +V AG G + L +F V +
Sbjct: 448 GREKDMIIINGVNYYNHEIEAAVEQVP--GVEPSFTAACAVRDAGSGTDELAVFFVPRYD 505
Query: 666 FTSQPDKLKMIFSKAIQSKL 685
+ L +AI++ +
Sbjct: 506 LDDRLAAL----LRAIRTHV 521
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 31/192 (16%)
Query: 202 CDESAVNLMTYKELREQVMLVANALDTMFSK--GDAIAIDMPMTVRAVIIYLAIILAGYV 259
C + + ++Y ++R+ V+ AL T SK I I MP + A I Y A +L+G +
Sbjct: 38 CWDEQLGKLSYNQVRKAVI----ALATKVSKYPDQHIGIMMPASAGAYIAYFATLLSGKI 93
Query: 260 VVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PLKAIVLPA 316
V I S RE+ + + T +++ + G P I +
Sbjct: 94 PVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLA------QTHGEDAEYPFSLIYMEE 147
Query: 317 IGNDVGIPLREQDLSWKD-----FLSSVDYHPRPNYY-SPVYNPVDAVVNILFSSGTTGE 370
+ ++LS+ + S+ + ++ +P D V ILF+SGT
Sbjct: 148 V---------RKELSFWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAV-ILFTSGTEKL 197
Query: 371 PKAIPWTQLSSI 382
PK +P T + +
Sbjct: 198 PKGVPLTHANLL 209
|
Length = 539 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 5e-04
Identities = 79/347 (22%), Positives = 134/347 (38%), Gaps = 65/347 (18%)
Query: 356 DAVVNILFSSGTTGEPK--AIP---------WTQLSSIRCTAEGWAHI--------DLKV 396
D + ++++SG+TG PK AI W +AE A + DL V
Sbjct: 105 DDLAYVIYTSGSTGRPKGVAIEHRNAAALLQWAAAV---FSAEELAGVLAATSICFDLSV 161
Query: 397 GDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLV 456
+++ P + G G V+L + L A L + E VT++ TVPS
Sbjct: 162 FEIFV-PLSTG---GRVVLADNAL--ALPDLP--AKAE-----------VTLINTVPSAA 202
Query: 457 KAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQG 516
+ + L + +R+ GE + L + + G +E + Y
Sbjct: 203 RELLRHDALP----SSVRTVNLAGEPLPQELVQRLYALPQVERVYNLYGPSE-DTTYSTY 257
Query: 517 SLLQPQAFGAFSTATMTAG--LVILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLN 571
+ ++P A S AG +LD P P P +G G+ YLG + L
Sbjct: 258 AEVEPGASRTPSIGRPLAGTQAYVLDAHLQPVPVGVPGELYIGGAGVARGYLGRPE--LT 315
Query: 572 AD----HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627
A+ + G +Y R GD+++R G + GR DD + + G + EI
Sbjct: 316 AERFLPNPFAGSPGERLY------RTGDLVRRRADGQLEYLGRIDDQVKVRGFRIELGEI 369
Query: 628 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLK 674
E ++ + E +++ A G + LV ++V G + L+
Sbjct: 370 EA-ALRSIPGVAEAVVVAIGDAAGDRQ-LVAYIVADPGAAIDIEDLR 414
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 45/192 (23%), Positives = 70/192 (36%), Gaps = 21/192 (10%)
Query: 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244
T I E V +Y EL E++ AN ++ KGD +A+ +
Sbjct: 18 DVYGHKTALIF--ESS--GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCP 73
Query: 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL 304
+ + + G ++V I E A L+ S+A + T P+Y ++
Sbjct: 74 EFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFY------PMYRQIQ 127
Query: 305 --GAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
A PL+ I L + D F P Y+P + D IL
Sbjct: 128 QEDATPLRHICLTRVALP-------ADDGVSSFTQLKAQQPATLCYAPPLS-TDDTAEIL 179
Query: 363 FSSGTTGEPKAI 374
F+SGTT PK +
Sbjct: 180 FTSGTTSRPKGV 191
|
Length = 517 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 211 TYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL + +A AL GD +A+ P + V++YLAI AG V V + S+ A
Sbjct: 13 TYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPSYPA 72
Query: 270 REIA 273
E+A
Sbjct: 73 AELA 76
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.001
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF-SKGDAIAIDMPMTVRAVII 249
+ VA+V+ + +TY+EL E+ +A+ L GD +AI + + V+
Sbjct: 2 DAVAVVFGDQS--------LTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVA 53
Query: 250 YLAIILAG--YVVVSIADSFAAREIATRLRVSKAKGIFTQ 287
LA++ AG YV + A A R +A L S AK + T
Sbjct: 54 ILAVLKAGAAYVPLDPAYP-AER-LAYMLEDSGAKLLLTD 91
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 107/503 (21%), Positives = 179/503 (35%), Gaps = 80/503 (15%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
++Y EL + +A+ L +AI + V+ LA++ AG V + ++
Sbjct: 2029 LSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDPNYP 2088
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
A +A L S A + TQ +L PL A V +PL ++
Sbjct: 2089 AERLAYMLEDSGAALLLTQ-------------RHLLERLPLPAGV-------ARLPL-DR 2127
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK--AIPWTQLSSIRCTA 386
D W D+ + P + + ++++SG+TG PK A+ L + C A
Sbjct: 2128 DAEWADYPDT---APAVQLAG------ENLAYVIYTSGSTGLPKGVAVSHGALVA-HCQA 2177
Query: 387 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDA 444
G + +L D + + F LNGA + + E+ + + ++
Sbjct: 2178 AGERY-ELSPADCELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDE-MERH 2235
Query: 445 GVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD-DLW---LSSKAWYNAI 500
GVT+L P ++ +G +R + GE L L +N
Sbjct: 2236 GVTILDFPPVYLQQLAEHAERDG-RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGY 2294
Query: 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAG-------LVILDECGVPYPDDQPCV 553
G TE A + L + + A + G ILD
Sbjct: 2295 ----GPTE---AVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLLA--PGMA 2345
Query: 554 GEVGLFPLYLGAS-------DR-LLNADHEEVYFRGMPM-YKGMCLRRHGDIIKRTVGGY 604
GE LYLG +R L A+ F P G L R GD+ + G
Sbjct: 2346 GE-----LYLGGEGLARGYLNRPGLTAER----FVPDPFSASGERLYRTGDLARYRADGV 2396
Query: 605 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 664
+ GR D + + G + EIE QA ++ E ++ A G + LV +VV
Sbjct: 2397 VEYLGRIDHQVKIRGFRIELGEIE-ARLQAHPAVREAVVVAQDGASG--KQLVAYVVPDD 2453
Query: 665 GFTSQPDKLKMIFSKAIQSKLNP 687
+L+ + + + + P
Sbjct: 2454 AAEDLLAELRAWLAARLPAYMVP 2476
|
Length = 5163 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 44/169 (26%), Positives = 64/169 (37%), Gaps = 20/169 (11%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY E+ A AL ++ KG + + +P I+ L I+ AG V +
Sbjct: 57 TYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALE 116
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD 329
EI + + AK I T D Y KV G L IVL E
Sbjct: 117 SEIKKQAEAAGAKLIVTNDT---------NYGKVKGLG-LPVIVLGEEKI-------EGA 159
Query: 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ 378
++WK+ L + D + + + + FSSGTTG K + T
Sbjct: 160 VNWKELLEAADRAGDTSDNEEILQ--TDLCALPFSSGTTGISKGVMLTH 206
|
Length = 546 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 25/178 (14%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAG--YVVVSIADS 266
+TY E E+V +A AL S + I ++ ++ LA + AG Y VS A S
Sbjct: 70 LTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPAYS 129
Query: 267 FAAREIATRLR----VSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG 322
+++ +LR + +F D +++ L A + + A+ V
Sbjct: 130 LVSQDFG-KLRHVLELLTPGLVFADDG--------AAFARALAAVVPADVEVVAVRGAVP 180
Query: 323 IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPV--DAVVNILFSSGTTGEPKAIPWTQ 378
+ L++ P + V D + LF+SG+TG PKA+ T
Sbjct: 181 GR---AATPFAALLAT----PPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTH 231
|
Length = 614 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 64/270 (23%), Positives = 105/270 (38%), Gaps = 45/270 (16%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAG--YVVVSIADS 266
+TY E QV +A AL + S + I ++ ++ LA + AG VS A S
Sbjct: 26 VTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYS 85
Query: 267 FAAREIATRLR----VSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG 322
+++ A +LR + +F +D +++ L A L + + A+ G
Sbjct: 86 LLSKDFA-KLRHIFDLLTPGAVFAEDG--------AAFARALAALGLAGVPVVAVRGAPG 136
Query: 323 IP--LREQDLSWKDFLSSVDYHPRPNYYSPVYNPV--DAVVNILFSSGTTGEPKAIPWTQ 378
P L+ P + V D V LF+SG+TG PKA+ T
Sbjct: 137 GPAIAFAALLA----------TPPTAAVDAAFAAVGPDTVAKYLFTSGSTGLPKAVINTH 186
Query: 379 L---SSIRCTAEGWAHIDLKVGDVYCWPTNLGW--VMGPVILFSSFL-NGATLALYQGSP 432
++ A+ W + + + W L W G F+ L NG TL + G P
Sbjct: 187 RMLCANQAMIAQCWPFLTEEPPVLVDW---LPWNHTFGGNHNFNMVLYNGGTLYIDDGKP 243
Query: 433 LERSFGKFVQ---DAGVTVLGTVPSLVKAW 459
+ F + ++ + TV VP K +
Sbjct: 244 VPGLFEETLRNLREVSPTVYFNVP---KGF 270
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAA 269
TY EL E+V +A L + GD +A+ + + + A+ G V V I +
Sbjct: 5 TYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRG 64
Query: 270 REIATRLRVSKAKGIFT 286
E+A L S A+ I
Sbjct: 65 EELAHILDHSGARLIVV 81
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 65/303 (21%), Positives = 107/303 (35%), Gaps = 69/303 (22%)
Query: 356 DAVVNILFSSGTTGEPKAIPWTQLS--SIRCTAEGWA-HIDLKVGDVY-CW-PTNLGWVM 410
D + ++++SGTTG PK + L+ ++ A I L GD + P L V
Sbjct: 88 DDLATLIYTSGTTGNPKGV---MLTHRNLLAQAAALLEVIPLSPGDRVLSFLP--LAHVF 142
Query: 411 GPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 469
+ + +GA + + SP + + +++ TV VP +
Sbjct: 143 EQRLGEYLPLSSGARVN-FAESP--ETLLEDLREVRPTVFFAVPRV-------------- 185
Query: 470 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 529
W KI + + V L K + A+ GG L A G+ L P+ F
Sbjct: 186 WEKIYAGIE----AKVAAAGPLKRKLFRWAL----GGGRLRFAVSGGAPLPPEVLEFFR- 236
Query: 530 ATMTAGLVILD-----ECGVPY---PDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG 581
G+ IL+ E +G VG G R+ A+ E+ RG
Sbjct: 237 ---ALGIPILEGYGLTETSGVATVNRPGDIRIGTVG--KPLPGVEVRI--AEDGEILVRG 289
Query: 582 MPMYKGMCLR---------------RHGDIIKRTVGGYIIVQGRADDTM-NLGGIKTSSV 625
+ KG + GDI + G++++ R D + GG +
Sbjct: 290 PNVMKGY-YKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQ 348
Query: 626 EIE 628
IE
Sbjct: 349 PIE 351
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 121/511 (23%), Positives = 182/511 (35%), Gaps = 100/511 (19%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDA-IAIDMPMTVRAVIIYL 251
+A+VW D Y EL Q +A+ L D +AI + + ++ L
Sbjct: 1148 IALVWDGGSLD--------YAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLL 1199
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA 311
AI+ AG V + + A +A L S + + TQ S +L
Sbjct: 1200 AILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQ-------------SHLLER----- 1241
Query: 312 IVLPAIGNDVGIPLREQDL-SWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGE 370
LP I L L SW + H D + ++++SG+TG+
Sbjct: 1242 --LPQAEGVSAIALDSLHLDSWPSQAPGLHLHG------------DNLAYVIYTSGSTGQ 1287
Query: 371 PKAIPWTQLSSIRCTAE--GW--AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLA 426
PK + T AE W A L DV + + + F + G L
Sbjct: 1288 PKGVGNTH----AALAERLQWMQATYALDDSDVLMQKAPISFDVSVWECFWPLITGCRLV 1343
Query: 427 LYQGSPLE----RSFGKFVQDAGVTVLGTVPSLVKAW----RNTNCLEGLDWTKIRSFAS 478
L P E + + VQ GVT L VP L++ + C T +R S
Sbjct: 1344 L--AGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPLAAAC------TSLRRLFS 1395
Query: 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY------IQGSLLQPQAF-GAFSTAT 531
GE L + N +++ +L + Y I + Q QA G S
Sbjct: 1396 GGEA--------LPA-ELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIG 1446
Query: 532 MTAGLV---ILDECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNADHEEVYFRGMPM- 584
G V +LD P C+G GL YLG L A+ F P+
Sbjct: 1447 RPLGNVLCRVLDAELNLLPPGVAGELCIGGAGLARGYLGRPA--LTAER----FVPDPLG 1500
Query: 585 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE-RVCDQADESILETAA 643
G L R GD + G + GR D + L G + EI+ R+ Q + AA
Sbjct: 1501 EDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPG---VAQAA 1557
Query: 644 ISVSPAGGGPEVLVIFVVLKKGFTSQPDKLK 674
+ V G + LV + + G ++ ++LK
Sbjct: 1558 VLVREGAAGAQ-LVGYYTGEAGQEAEAERLK 1587
|
Length = 4334 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 113/491 (23%), Positives = 172/491 (35%), Gaps = 100/491 (20%)
Query: 210 MTYKELREQVMLVANALDTMFSK-GDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+Y+E+REQV+ +AN L K GD++A+ +P +V + AI+ AG + + +
Sbjct: 484 FSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYP 543
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
+ L ++ + T L P ++ V L A PL+
Sbjct: 544 DDRLKMMLEDARPSLLITTADQL------PRFADVPDLTSLCYNAPLAPQG--AAPLQL- 594
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPK-------AIP----WT 377
+P+ Y I+F+SG+TG PK AI W
Sbjct: 595 --------------SQPH--HTAY--------IIFTSGSTGRPKGVMVGQTAIVNRLLWM 630
Query: 378 QLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY----QGSPL 433
Q H L DV T + + F F+ GA L + PL
Sbjct: 631 Q-----------NHYPLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPL 679
Query: 434 ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI---RSFASTGETSNVD-DDL 489
+F + GVT VPS++ A+ + EG + + F S GE D
Sbjct: 680 A--MQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCS-GEALPADLCRE 736
Query: 490 WLSSKAWYNAIIESC-GGTELS---SAYIQGSLLQPQAFGAFSTATM-------TAGLVI 538
W + A + + G TE + S Y + A +++ GL I
Sbjct: 737 W---QQLTGAPLHNLYGPTEAAVDVSWYPAF----GEELAAVRGSSVPIGYPVWNTGLRI 789
Query: 539 LDECGVPYPDDQPCVGEVGLFPLYLG----ASDRLLNADHEEVYFRGMPMYKGMCLRRHG 594
LD P P G G LYL A L D F P G + R G
Sbjct: 790 LDARMRPVP-----PGVAG--DLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTG 842
Query: 595 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC----DQADESILETAAISVSPAG 650
D+ + G + GR+DD + + G + EI+R D + G
Sbjct: 843 DVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATG 902
Query: 651 GGPEVLVIFVV 661
G LV ++V
Sbjct: 903 GDARQLVGYLV 913
|
Length = 1296 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 29/146 (19%)
Query: 538 ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMC-------- 589
++DE PD +P GE+ LL AD + G Y GM
Sbjct: 356 VVDEHDQELPDGEP--GEL------------LLRADEPFAFATG---YFGMPEKTVEAWR 398
Query: 590 -LRRH-GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647
L H GD + R G+ R D + G SS E+E+V + ++ A V
Sbjct: 399 NLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVL-LSHPAVAAAAVFPVP 457
Query: 648 PAGGGPEVLVIFVVLKKGFTSQPDKL 673
G EV+ VVL+ G +P L
Sbjct: 458 SELGEDEVMAA-VVLRDGTALEPVAL 482
|
Length = 542 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 210 MTYKELREQVMLVANAL-DTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY EL E V +A L + KGD +A+ M + + VI Y AI+ AG VVV +
Sbjct: 2 ITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNR 61
Query: 269 AREIATRLRVSKAKGIFTQD 288
E+ L S A+ +
Sbjct: 62 EAELEHILNDSGARVLIVGS 81
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 47/190 (24%)
Query: 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245
+ + + A + ++ +TY +L+E +A +D++ I + M+
Sbjct: 13 QTQPDFPAYDYLGEK--------LTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPE 64
Query: 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYS---K 302
+ +L + AG+ + + S A I + V+K I + + PL
Sbjct: 65 MLATFLGAVKAGHAYIPVDVSSPAERIEMIIEVAKPSLIIATE-------ELPLEILGIP 117
Query: 303 VLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNIL 362
V+ LK I D ++ D NYY I+
Sbjct: 118 VITLDELKDIFATGNPYDFDHAVKGDD----------------NYY------------II 149
Query: 363 FSSGTTGEPK 372
F+SGTTG+PK
Sbjct: 150 FTSGTTGKPK 159
|
Length = 503 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 12/168 (7%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
++ EL ++ A L + GD +A+ M A + G V + F
Sbjct: 12 RSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFK 71
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRK-FPLYSKVLGAAPLKAIVLPAIG-NDVGIPLR 326
EIA L S A+ + +L G P VL + P + A + +
Sbjct: 72 PEEIAYILEDSGARVLIAHADLLHGLASALPAGVTVL-SVPTPPEIAAAYRISPALLTPP 130
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAI 374
+ W+ +L+ + Y P PV +++++SGTTG PK +
Sbjct: 131 AGAIDWEGWLAQ-----QEPYDGP---PVPQPQSMIYTSGTTGHPKGV 170
|
Length = 509 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.004
Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 33/198 (16%)
Query: 221 LVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSK 280
L A+ + +K D +++ P T ++ A+ +AG V+ I A IA LR +K
Sbjct: 52 LAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAK 111
Query: 281 AKGIFTQDFILRGGRKF-PLYSKVLGAAPLKAIVLPAIGNDVGIP---LREQDLSWKDFL 336
K +F R F PL +VL +L + +++ +P + E D +
Sbjct: 112 PKILFVD-------RSFEPLAREVLH-------LLSSEDSNLNLPVIFIHEIDFPKRPSS 157
Query: 337 SSVDY-------HPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAE 387
+DY P P+ + ++ D +++ ++SGTT +PK + + + T
Sbjct: 158 EELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLS 217
Query: 388 ---GWAHIDLKVGDVYCW 402
GW ++ VY W
Sbjct: 218 AIIGW---EMGTCPVYLW 232
|
Length = 579 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKVGDVYCWPTNLGW----- 408
+D I+F+SG+TG+PKA+ T + +A G A ++ L D W L
Sbjct: 76 LDRPATIIFTSGSTGKPKAVVHT-WGNHLASARGSAENLGLTPDD--NW---LLSLPLFH 129
Query: 409 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVP 453
V G I+ S L G L L E + +++ GVT + VP
Sbjct: 130 VSGLAIVMRSLLAGGALVLPDKFDAEAI-AEALENHGVTHISLVP 173
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 693 | |||
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 100.0 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.96 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.94 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.93 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.89 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.67 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.65 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.34 | |
| PF13745 | 91 | HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A. | 99.2 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.94 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 98.85 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.41 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.77 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.52 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.46 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 94.88 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 90.22 |
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-92 Score=813.63 Aligned_cols=688 Identities=61% Similarity=1.049 Sum_probs=578.5
Q ss_pred CCCcccccChhHHHHcCCCchhhHHHHHHHHHHHhhccCCChhhHHHHHHHhHhcCCCCCCCCchhhhHHHhhhcccCCC
Q 005501 1 MGKNIREVGVEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIK 80 (693)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~ 80 (693)
|||++.++.++||.++|+..++++.|.+.|+++...+.. +-..++-.. ..+.|+|..+.++|++.++.+.-++.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (728)
T PLN03052 4 AGKSVDEITVGDLEAAGLSPEEAEKFFKELQVILTRAGA-SPPSIWRRI-SQSLLTPSHPFALHQLMYYSCYKNWDSDTL 81 (728)
T ss_pred ccCChhhcCHHHHHHcCCChHHHHHHHHHHHHHHHhhcC-CchHHHHHH-HHHhcCCCCCccHHHHhhhhcccCCCcccc
Confidence 799999999999999999999999999999999977763 567777777 889999999999999988899888877766
Q ss_pred CCCccccCCcccccccchHHHHHHhCCcccccccCCCCCCHHHHHHHHhhCHHHHHHHHHhhcccceeccceeeccCCCC
Q 005501 81 GPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK 160 (693)
Q Consensus 81 ~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 160 (693)
+++..|.|.++...+++|..+++..+.......|...+.+|+.|++++++++..||..+++.+.+.+.+++.++++....
T Consensus 82 ~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~sv~~~~~fw~~~~~~~~~~~~~~~~~v~~~~~~ 161 (728)
T PLN03052 82 GPPPAWFPSPEIAKLTNLGRLLEARGKELLGSKYKDPISSFSEFQRFSVENPEVYWSIVLDELSLVFSVPPRCILDTSDE 161 (728)
T ss_pred CCCCCCCCChhhcccchHHHHHHHhhhhhhHHhhCCChhhHHHHHHHHhhCHHHHHHHHHHhcCCCccCCCceeecCCCC
Confidence 67788999998888899999988865443334377777899999999999999999999999988999999999875333
Q ss_pred CCCCCCcCCCCccchhhhhccCcccCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEE
Q 005501 161 SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239 (693)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~ 239 (693)
..+..+||.++.+|+++++++++. +++|+++|+++.+++.+++..+++||+||.++++++|++|++. +++||+|+++
T Consensus 162 ~~~~~~wf~g~~ln~~~~~l~~~~--~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~ 239 (728)
T PLN03052 162 SNPGGQWLPGAVLNVAECCLTPKP--SKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAID 239 (728)
T ss_pred CCCCCEECCCCEeEHHHHHHHHHh--ccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 445679999999999999998754 4689999999987532233567899999999999999999999 9999999999
Q ss_pred cCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCC
Q 005501 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN 319 (693)
Q Consensus 240 ~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (693)
++|++++++++|||+++|++++|++|.++.+++.+++++++|+++|+++.+.++++.++....+.+.....++++.....
T Consensus 240 ~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~ 319 (728)
T PLN03052 240 MPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGK 319 (728)
T ss_pred eCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999998877777777777766655556666654321
Q ss_pred CCCCCCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCE
Q 005501 320 DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDV 399 (693)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~ 399 (693)
........+..+|+++..................++++++||+|||||||+||||+++|+++++.+......++++++|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~~l~~~d~ 399 (728)
T PLN03052 320 SVRVKLREGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHLDIRKGDI 399 (728)
T ss_pred ccccccccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhcCCCCCcE
Confidence 11111122356788876543210001112222335689999999999999999999999998877766666788999999
Q ss_pred EEEeCCccccchhHHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEee
Q 005501 400 YCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (693)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~g 479 (693)
++++++++|+++.+.++.+|+.|++++++++.+++..+++++++++||++.++|++++.|.+.......++++||.+++|
T Consensus 400 ~~~~~~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~ 479 (728)
T PLN03052 400 VCWPTNLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGST 479 (728)
T ss_pred EEECCCcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEec
Confidence 99999999999998899999999999999977777889999999999999999999999988754456788999999999
Q ss_pred cCCCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEEe
Q 005501 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF 559 (693)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v~ 559 (693)
||+++++...|+...++..+++|.||+||++++++...+..+...+++|+|++|++++|+|++|+++|.|++++|||++.
T Consensus 480 Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~GEL~v~ 559 (728)
T PLN03052 480 GEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELALF 559 (728)
T ss_pred CCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEECCCCCCCCCCCCceEEEEEe
Confidence 99999999888887665567999999999987665554444556678999999999999999999999987557999998
Q ss_pred cccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccc
Q 005501 560 PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL 639 (693)
Q Consensus 560 ~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~ 639 (693)
+.+++...+|++.+.+..||..+|..+|++||+|||++++++||+++|+||+||+||++|+||++.|||++|+..||+|.
T Consensus 560 ~~~~~~~~~~~~~~~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~ 639 (728)
T PLN03052 560 PLMFGASSTLLNADHYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVL 639 (728)
T ss_pred CCCCCCCccccCchhhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcc
Confidence 88887777777887788899888888888999999999999999999999999999999999999999999854799999
Q ss_pred eeEEEeecCCCCCceEEEEEEEec--CCCCCChHHHHHHHHHHHHh----hcCCCceec
Q 005501 640 ETAAISVSPAGGGPEVLVIFVVLK--KGFTSQPDKLKMIFSKAIQS----KLNPLFKVW 692 (693)
Q Consensus 640 ~a~Vv~~~~~~~g~~~l~a~vv~~--~~~~~~~~~l~~~l~~~L~~----~m~P~~~v~ 692 (693)
||+|++++++..|++.+++|||++ ++...+.++|+++++++|+. +++|..++.
T Consensus 640 eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~ 698 (728)
T PLN03052 640 ETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVI 698 (728)
T ss_pred eEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCCccCCCEEEE
Confidence 999999998766558999999998 56556767888876655554 566665554
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-83 Score=847.46 Aligned_cols=621 Identities=19% Similarity=0.192 Sum_probs=508.2
Q ss_pred HcCCCchhhHHHHHHHHHHHhhccCC-ChhhHHHHHHHhHhcCCCCCCCCchhhhHHHhhhcccCCCCC-----Ccc--c
Q 005501 15 KVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP-----PLY--W 86 (693)
Q Consensus 15 ~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~-----~~~--~ 86 (693)
++++++++..+|.++|+++++...++ +||++||++ |++.|++.|+.+ +.||||+||++|+..... ... .
T Consensus 1408 plR~~~~~~~t~~~~l~~v~~~~~~a~~hq~~p~~~-i~~~l~~~r~~~--~~pLFq~~~~~~~~~~~~~~~~~~~~~~~ 1484 (3956)
T PRK12467 1408 VLRAEVDGQASFQQLLQQVKQAALEAQAHQDLPFEQ-LVEALQPERSLS--HSPLFQVMFNHQRDDHQAQAQLPGLSVES 1484 (3956)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHhccCCCHHH-HHHHhcccccCC--CCCceeEEEEeecccccccccCCCceeEe
Confidence 45677888899999999999999888 999999999 999999999855 445699999999754322 111 1
Q ss_pred cCCcccccccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcccceeccceee--ccCCCCCCC
Q 005501 87 FPSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKH 163 (693)
Q Consensus 87 ~~~~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~ 163 (693)
.......++|||++.+.+.++++.+.+ |++ ++|++.++++|.++|.++|+++..+++.+...+ +...+....
T Consensus 1485 ~~~~~~~~~~dL~l~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~l~~~~~~~~~~~ 1559 (3956)
T PRK12467 1485 LSWESQTAQFDLTLDTYESSEGLQASLTYAT-----DLFEASTIERLAGHWLNLLQGLVADPERRLGELDLLDEAERRQI 1559 (3956)
T ss_pred eecCCcccccceEEEEEecCCeEEEEEEEeC-----CcCCHHHHHHHHHHHHHHHHHHhhCccCceeeccccchHHhhhh
Confidence 111235678999999888888898889 999 999999999999999999999988887776664 444333344
Q ss_pred CCCcCCCCccchhhhhccC--cccCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEc
Q 005501 164 GGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDM 240 (693)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~ 240 (693)
...|+.+........+++. ..+|+++|+++|+++.++ ++||+||+++++++|++|+++ +++|++|+|++
T Consensus 1560 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~ 1631 (3956)
T PRK12467 1560 LEGWNATHTGYPLARLVHQLIEDQAAATPEAVALVFGEQ--------ELTYGELNRRANRLAHRLIALGVGPEVLVGIAV 1631 (3956)
T ss_pred HHhhcCCccCCCccccHHHHHHHHHHhCCCCeEEEeCCc--------EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence 4567765443332333332 346689999999999877 999999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCC
Q 005501 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND 320 (693)
Q Consensus 241 ~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (693)
+||+++++++|||+|+|++|+|+||.+|.+|+.+++++++++++|++....... ........+.++..
T Consensus 1632 ~~s~~~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~--- 1699 (3956)
T PRK12467 1632 ERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARL---------PLPDGLRSLVLDQE--- 1699 (3956)
T ss_pred cCCHHHHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhC---------ccccCCcEEEeccc---
Confidence 999999999999999999999999999999999999999999999987532110 00001112222110
Q ss_pred CCCCCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEE
Q 005501 321 VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVY 400 (693)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~ 400 (693)
.++..... ...+.....++++|||+|||||||+||||+++|+++.+.+.+....++++++|++
T Consensus 1700 ------------~~~~~~~~-----~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~~~~~~d~~ 1762 (3956)
T PRK12467 1700 ------------DDWLEGYS-----DSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSAADVV 1762 (3956)
T ss_pred ------------cchhccCC-----CCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHHHHHHHHHHHhcCCCcccEE
Confidence 00001000 1112233467999999999999999999999999999999999889999999999
Q ss_pred EEeCCccccchhHHHHHHHHcCCEEEEecCC--CChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEe
Q 005501 401 CWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478 (693)
Q Consensus 401 l~~~~~~~~~~~~~~~~~L~~G~~lvi~~~~--~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~ 478 (693)
++++|++|+++++++|.+|++|+++++++.. .++..+++.|+++++|++.++|++++.|.+... ....+++||.+++
T Consensus 1763 l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~~~lr~v~~ 1841 (3956)
T PRK12467 1763 LQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLLQMDE-QVEHPLSLRRVVC 1841 (3956)
T ss_pred EEecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCeEEECCHHHHHHHHhhcc-ccccCCCceEEEE
Confidence 9999999999999999999999999998743 368899999999999999999999999987422 2345789999999
Q ss_pred ecCCCCcchHHHHHhhCCCCceecccccccccceeccCCcC----CCCccCccCCCCCCceEEEECCCCCCCCCCCCcee
Q 005501 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVG 554 (693)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giG 554 (693)
|||++++++.+.|.+.+++..++|.||+||+++.++..... ......+||+|++|++++|+|++++++|.|++ |
T Consensus 1842 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~--G 1919 (3956)
T PRK12467 1842 GGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVPIGVA--G 1919 (3956)
T ss_pred ccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEECCCCCCCCCCCc--e
Confidence 99999999999888887778899999999999765543221 11234689999999999999999999999995 9
Q ss_pred eEEE-----ecccCCCcccccccccccccccccccC-CCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHH
Q 005501 555 EVGL-----FPLYLGASDRLLNADHEEVYFRGMPMY-KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 628 (693)
Q Consensus 555 el~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~-~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE 628 (693)
||+| ++||++ +++.|+++|+.+|+. +|.|||||||+|+|++||+|+|+||+|+|||++|+||+|+|||
T Consensus 1920 El~i~G~~v~~GYl~------~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE 1993 (3956)
T PRK12467 1920 ELYLGGVGLARGYLN------RPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIE 1993 (3956)
T ss_pred EEEeccccccccccC------ChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCceEEeCeEEechHHHH
Confidence 9998 578888 556899999999985 4789999999999999999999999999999999999999999
Q ss_pred HHHhccCcccceeEEEeecCCCCCceEEEEEEEecCCCCC--------ChHHHHHHHHHHHHhhcCCCceec
Q 005501 629 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS--------QPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 629 ~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~--------~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
++|. +||+|.+|+|++.+ ..++ +.++|||++.++... ..++++++++++||+||+|.+++.
T Consensus 1994 ~~l~-~~p~V~~a~vv~~~-~~~~-~~lva~vv~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~ 2062 (3956)
T PRK12467 1994 ARLR-EQGGVREAVVIAQD-GANG-KQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLVF 2062 (3956)
T ss_pred HHHH-hCCCcceEEEEEec-CCCC-cEEEEEEEecCcccccccccccccHHHHHHHHHhhCchhhCchhhhh
Confidence 9995 99999999999986 3344 899999998754321 346799999999999999998875
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-83 Score=841.50 Aligned_cols=614 Identities=15% Similarity=0.139 Sum_probs=503.4
Q ss_pred HcCCCchhhHHHHHHHHHHHhhccCC-ChhhHHHHHHHhHhcCCCCCCCCchhhhHHHhhhcccCCCCC--------Ccc
Q 005501 15 KVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP--------PLY 85 (693)
Q Consensus 15 ~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~--------~~~ 85 (693)
++++.+.+..+|.++|+++++...++ +||++||++ |++.++.. .+ ||||+||++||..... ...
T Consensus 2932 p~r~~~~~~~~~~~~l~~v~~~~~~~~~h~~~~~~~-i~~~~~~~----~~--~lf~~~~~~~~~~~~~~~~~~~~~~~~ 3004 (3956)
T PRK12467 2932 PVIASPRAEQTVSDWLQQVQAQNLALREFEHTPLAD-IQRWAGQG----GE--ALFDSILVFENYPISEALKQGAPSGLR 3004 (3956)
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHHHHhccCCCHHH-HHHhhccC----CC--CCcceEEEeecCCchhhhhccCCCCce
Confidence 44678888999999999999998888 999999999 99998632 23 5699999999864221 111
Q ss_pred ccC-CcccccccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcccceeccceee--ccCCCCC
Q 005501 86 WFP-SLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKS 161 (693)
Q Consensus 86 ~~~-~~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~ 161 (693)
..+ .....++|+|++.+.. ++++.+.+ |++ ++|++.++++|.++|.++|+++..+++.+...+ +...+..
T Consensus 3005 ~~~~~~~~~~~~~l~l~~~~-~~~~~~~~~y~~-----~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~l~~l~~~~~~ 3078 (3956)
T PRK12467 3005 FGAVSSREQTNYPLTLAVGL-GDTLELEFSYDR-----QHFDAAAIERLAESFDRLLQAMLNNPAARLGELPTLAAHERR 3078 (3956)
T ss_pred eecccccccccCceEEEecc-CcceeEEEEech-----hhCCHHHHHHHHHHHHHHHHHHHhCcCCchhhccCCCHHHHH
Confidence 111 1134478888888765 56788888 998 999999999999999999999987777765553 2222222
Q ss_pred CCCCCcCCCCccchhhhhccC--cccCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEE
Q 005501 162 KHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAI 238 (693)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i 238 (693)
.....|+..........+++. ..+++++||++|+++.++ ++||+||+++++++|++|+++ +++|++|+|
T Consensus 3079 ~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l 3150 (3956)
T PRK12467 3079 QVLHAWNATAAAYPSERLVHQLIEAQVARTPEAPALVFGDQ--------QLSYAELNRRANRLAHRLIAIGVGPDVLVGV 3150 (3956)
T ss_pred HHHHhhccCCCCCCccccHHHHHHHHHHhCCCcceEeeCCc--------ccCHHHHHHHHHHHHHHHHHcCCCCCCeEEE
Confidence 334568765544333333332 346789999999999887 999999999999999999999 999999999
Q ss_pred EcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCC
Q 005501 239 DMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIG 318 (693)
Q Consensus 239 ~~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (693)
+++||+++++++|||+|+|++|||+||.+|.+|+.+++++++++++|++....... ........+.++.
T Consensus 3151 ~~~~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~---------~~~~~~~~~~~~~-- 3219 (3956)
T PRK12467 3151 AVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQL---------PAPAGDTALTLDR-- 3219 (3956)
T ss_pred EeCCCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhc---------ccccCCceeeecc--
Confidence 99999999999999999999999999999999999999999999999987532110 0000111111110
Q ss_pred CCCCCCCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCC
Q 005501 319 NDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGD 398 (693)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d 398 (693)
...... ....+.....++++|||+|||||||+||||+++|+++.+.+.+....++++++|
T Consensus 3220 ----------------~~~~~~----~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d 3279 (3956)
T PRK12467 3220 ----------------LDLNGY----SENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDAND 3279 (3956)
T ss_pred ----------------hhhccc----CCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhcCCCcCC
Confidence 000000 011122345689999999999999999999999999999999998999999999
Q ss_pred EEEEeCCccccchhHHHHHHHHcCCEEEEecC-CCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEE
Q 005501 399 VYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFA 477 (693)
Q Consensus 399 ~~l~~~~~~~~~~~~~~~~~L~~G~~lvi~~~-~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~ 477 (693)
++++++|++|+.+++++|.+|+.|+++++++. ..++..+++.|++++||++.++|++++.|++.. ...++++||.++
T Consensus 3280 ~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~--~~~~~~~lr~~~ 3357 (3956)
T PRK12467 3280 RVLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA--GGADCASLDIYV 3357 (3956)
T ss_pred EEEEecCccHhHHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc--cccCCCCceEEE
Confidence 99999999999999999999999999999883 257889999999999999999999999998653 234578999999
Q ss_pred eecCCCCcchHHHHHhhCCCCceecccccccccceeccCCcCC----CCccCccCCCCCCceEEEECCCCCCCCCCCCce
Q 005501 478 STGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----PQAFGAFSTATMTAGLVILDECGVPYPDDQPCV 553 (693)
Q Consensus 478 ~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~gi 553 (693)
+|||++++++.+++.+.++++.++|.||+||+++.++...... .....+||+|++|++++|+|++++++|.|++
T Consensus 3358 ~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~vp~G~~-- 3435 (3956)
T PRK12467 3358 FGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLNPVPVGVA-- 3435 (3956)
T ss_pred EecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEECCCCCCCCCCCC--
Confidence 9999999999998888877889999999999987655432211 1234689999999999999999999999995
Q ss_pred eeEEE-----ecccCCCccccccccccccccccccc-CCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHH
Q 005501 554 GEVGL-----FPLYLGASDRLLNADHEEVYFRGMPM-YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627 (693)
Q Consensus 554 Gel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~-~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eI 627 (693)
|||+| ++||++ ++++|+++|+.+|+ .+|.|||||||+|+|++||+|+|+||+|+|||+||+||+|+||
T Consensus 3436 GEL~i~G~~v~~GY~~------~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EI 3509 (3956)
T PRK12467 3436 GELYIGGVGLARGYHQ------RPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEI 3509 (3956)
T ss_pred ceEEEcchhhhhhccC------CcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHH
Confidence 99998 678888 56699999999998 6788999999999999999999999999999999999999999
Q ss_pred HHHHhccCcccceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceecC
Q 005501 628 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 628 E~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~~ 693 (693)
|++|. +||+|.+|+|++.++ ..+ +.++|||++.++...+.++++++++++||.||+|.+++.+
T Consensus 3510 E~~l~-~~p~V~~a~v~~~~~-~~~-~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~~~~l 3572 (3956)
T PRK12467 3510 EARLL-QHPSVREAVVLARDG-AGG-KQLVAYVVPADPQGDWRETLRDHLAASLPDYMVPAQLLVL 3572 (3956)
T ss_pred HHHHh-hCcccceEEEEEecC-CCC-cEEEEEEeCCCCCcccHHHHHHHHhccCChhhCCCeeeee
Confidence 99995 999999999998754 345 8999999988755566789999999999999999998753
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-80 Score=831.74 Aligned_cols=611 Identities=18% Similarity=0.208 Sum_probs=504.8
Q ss_pred HHcCCCchhhHHHHHHHHHHHhhccCC-ChhhHHHHHHHhHhcCCCCCCCCchhhhHHHhhhcccCCCCCC----ccc--
Q 005501 14 MKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPP----LYW-- 86 (693)
Q Consensus 14 ~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~~----~~~-- 86 (693)
++++++++...+|.++|+++++...++ +||++||++ |++.+++.|+.+. .|+||+||++++...... ...
T Consensus 2891 lPlrv~l~~~~t~~~ll~~v~~~~~~~~~hq~~p~~~-iv~~l~~~r~~~~--~plf~~~~~~~~~~~~~~~~~~~~~~~ 2967 (5163)
T PRK12316 2891 QVLRAQVDAQLAFRDLLGQVKEQALGAQAHQDLPFEQ-LVEALQPERSLSH--SPLFQVMYNHQSGERAAAQLPGLHIES 2967 (5163)
T ss_pred eeEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHhccccccCC--CCceeEEEeeeccccccccCCCceeEe
Confidence 455678888999999999999999888 999999999 9999999988554 455999999998653321 111
Q ss_pred cCCcccccccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcccceeccceee--ccCCCCCCC
Q 005501 87 FPSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKH 163 (693)
Q Consensus 87 ~~~~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~ 163 (693)
.......+++||.+.+.+.++++...+ |+. ++|+++++++|.++|.++|+++...++.+...+ +...+....
T Consensus 2968 ~~~~~~~~~~dL~l~v~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~f~~lL~~l~~~p~~~i~~l~~~~~~~~~~~ 3042 (5163)
T PRK12316 2968 FAWDGAATQFDLALDTWESAEGLGASLTYAT-----DLFDARTVERLARHWQNLLRGMVENPQRSVDELAMLDAEERGQL 3042 (5163)
T ss_pred eeccCCccceeeEEEEEecCCcEEEEEEECc-----CCCCHHHHHHHHHHHHHHHHHHHhCCCCchhhccCCCHHHHHHH
Confidence 111234578999999888888898889 999 999999999999999999999987776665553 222222222
Q ss_pred CCCcCCCCccchhhhhccC--cccCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEc
Q 005501 164 GGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDM 240 (693)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~ 240 (693)
...|+..........+++. ..+|+++|+++|+++.++ .+||+||+++++++|++|++. +++|++|+|++
T Consensus 3043 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~~~~lA~~L~~~gv~~~~~V~l~~ 3114 (5163)
T PRK12316 3043 LEAWNATAAEYPLERGVHRLFEEQVERTPDAVALAFGEQ--------RLSYAELNRRANRLAHRLIERGVGPDVLVGVAV 3114 (5163)
T ss_pred HHHhCCCCcCCCCcCCHHHHHHHHHHhCCCCeeEeeCCe--------EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence 3457655443333333332 446789999999999887 999999999999999999999 99999999999
Q ss_pred CCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCC
Q 005501 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND 320 (693)
Q Consensus 241 ~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (693)
+||+++++++|||+|+|++|||+||.+|.+|+.+++++++++++|++.... .+ ......++.++...
T Consensus 3115 ~~s~~~iv~~lail~aGa~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~-----~~------~~~~~~~~~~~~~~-- 3181 (5163)
T PRK12316 3115 ERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHLR-----LP------LAQGVQVLDLDRGD-- 3181 (5163)
T ss_pred cCCHHHHHHHHHHHHhCceeeecCCCCcHHHHHHHHHhcCCCEEEeCcccc-----CC------ccCCccEEEecccc--
Confidence 999999999999999999999999999999999999999999999986430 00 00011122221100
Q ss_pred CCCCCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEE
Q 005501 321 VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVY 400 (693)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~ 400 (693)
.. .....+.....++++|||+|||||||+||||+++|+++.+.+.+....++++++|++
T Consensus 3182 ----------------~~-----~~~~~~~~~~~~~~~ayii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~ 3240 (5163)
T PRK12316 3182 ----------------EN-----YAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVGDRV 3240 (5163)
T ss_pred ----------------cc-----ccccCCCCCCCCCCeEEEEeCCCCCCCCCEEEEccHHHHHHHHHHHHhhCCCcccEE
Confidence 00 001112233567899999999999999999999999999999999899999999999
Q ss_pred EEeCCccccchhHHHHHHHHcCCEEEEecCC--CChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEe
Q 005501 401 CWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478 (693)
Q Consensus 401 l~~~~~~~~~~~~~~~~~L~~G~~lvi~~~~--~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~ 478 (693)
++++|++||.+++++|.+|++|+++++.+.. .++..+.+.++++++|++.++|+++..+++.. ....+++||.+++
T Consensus 3241 l~~~~~~fd~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ps~~~~l~~~~--~~~~~~~lr~~~~ 3318 (5163)
T PRK12316 3241 LQFTTFSFDVFVEELFWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEE--DAHRCTSLKRIVC 3318 (5163)
T ss_pred EeecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHHHHHHHHcCCcEEEcCHHHHHHHHhcc--ccccCCcceEEEE
Confidence 9999999999999999999999999998643 36788999999999999999999999988653 2334678999999
Q ss_pred ecCCCCcchHHHHHhhCCCCceecccccccccceeccCCc-CCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEE
Q 005501 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVG 557 (693)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~ 557 (693)
|||++++++.++|.. +.+++|.|||||+++.++.... .......+||+|++|++++|+|++++++|.|++ |||+
T Consensus 3319 gGe~l~~~~~~~~~~---~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~--GEl~ 3393 (5163)
T PRK12316 3319 GGEALPADLQQQVFA---GLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILDGSLEPVPVGAL--GELY 3393 (5163)
T ss_pred ccccCCHHHHHHHHh---CCcEeeccCCCccEeeEeEEeccCCCCCCCccceecCCCEEEEECCCCCCCCCCCC--ceEE
Confidence 999999999888872 5679999999999986654433 222345789999999999999999999999995 9999
Q ss_pred E-----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHh
Q 005501 558 L-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (693)
Q Consensus 558 v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~ 632 (693)
| ++||++ ++++|+++|+.+|+.+|.|||||||+|||++||.|+|+||+|+|||++|+||+|+|||++|.
T Consensus 3394 i~G~~v~~GY~~------~~~~t~~~f~~~p~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~qvKi~G~rIel~eIE~~l~ 3467 (5163)
T PRK12316 3394 LGGEGLARGYHN------RPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRGFRIELGEIEARLL 3467 (5163)
T ss_pred ecccccchhcCC------ChhhchhhCCCCCCCCCCeeEecCceEEECCCCCEEEecccCCeEeeCcEeeChHHHHHHHH
Confidence 8 678888 56699999999999889999999999999999999999999999999999999999999995
Q ss_pred ccCcccceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceecC
Q 005501 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 633 ~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~~ 693 (693)
+||+|.+|+|++.+ + ++++|||++..+.....++++++|+++||.||+|..++.+
T Consensus 3468 -~~~~V~~a~v~~~~----~-~~l~a~vv~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~ 3522 (5163)
T PRK12316 3468 -EHPWVREAVVLAVD----G-RQLVAYVVPEDEAGDLREALKAHLKASLPEYMVPAHLLFL 3522 (5163)
T ss_pred -hCCCcceEEEEEcc----C-CeEEEEEEcCCcCcccHHHHHHHHHhhCCcccCcceeeeH
Confidence 99999999999865 3 7899999987655555688999999999999999988753
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-80 Score=830.64 Aligned_cols=618 Identities=19% Similarity=0.195 Sum_probs=507.4
Q ss_pred HHcCCCchhhHHHHHHHHHHHhhccCC-ChhhHHHHHHHhHhcCCCCCCCCchhhhHHHhhhcccCCCCC-------C--
Q 005501 14 MKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP-------P-- 83 (693)
Q Consensus 14 ~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~-------~-- 83 (693)
+++++.+.+..+|.++|+++++...++ +||++||++ |++.|++.|+.+ ..|+||+||++|+..... .
T Consensus 342 lplr~~~~~~~tf~~~l~~v~~~~~~a~~hq~~p~~~-iv~~l~~~r~~~--~~plf~~~~~~~~~~~~~~~~~~~~~~~ 418 (5163)
T PRK12316 342 QVLRSVFDGRTRVATLLAGVKDTVLGAQAHQDLPFER-LVEALKVERSLS--HSPLFQVMYNHQPLVADIEALDTVAGLE 418 (5163)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHhccCCHHH-HHHHhCCCCCCC--CCCcEEEEEEeecccccccccccCCCce
Confidence 466788888899999999999999888 999999999 999999999855 455699999999732211 1
Q ss_pred ccccCCcccccccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcccceeccceee--ccCCCC
Q 005501 84 LYWFPSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDK 160 (693)
Q Consensus 84 ~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~ 160 (693)
....+......+|||.+.+.+.++++.+.+ |+. ++|++++++++.++|.++|+++..+++.+...+ +...+.
T Consensus 419 ~~~~~~~~~~~~~dL~l~v~~~~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~i~~~p~~~i~~l~~~~~~~~ 493 (5163)
T PRK12316 419 FGQLEWKSRTTQFDLTLDTYEKGGRLHAALTYAT-----DLFEARTVERMARHWQNLLRGMVENPQARVDELPMLDAEER 493 (5163)
T ss_pred EEeeccCCCccceeEEEEEEEcCCcEEEEEEEch-----hhCCHHHHHHHHHHHHHHHHHHHhccccccccCCCCCHHHH
Confidence 111122235578999999888888999999 999 999999999999999999999988777776664 333222
Q ss_pred CCCCCCcCCCCccchhhhhccC--cccCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEE
Q 005501 161 SKHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237 (693)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~ 237 (693)
......|+..........+++. ..+++++|+++|+++.++ ++||+||+++++++|+.|++. +++|++|+
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~A~~~~~~--------~~TY~eL~~~~~~lA~~L~~~gv~~g~~V~ 565 (5163)
T PRK12316 494 GQLVEGWNATAAEYPLQRGVHRLFEEQVERTPEAPALAFGEE--------TLDYAELNRRANRLAHALIERGVGPDVLVG 565 (5163)
T ss_pred HHHHHHhcCccccCCCCCCHHHHHHHHHHHCCCCeEEEeCCc--------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 2223345543322211222221 345689999999998777 999999999999999999999 99999999
Q ss_pred EEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCC
Q 005501 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAI 317 (693)
Q Consensus 238 i~~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (693)
|+++|++++++++|||+|+|++|||+||.+|.+++.+++++++++++|++....... + ......++.++..
T Consensus 566 l~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~---~------~~~~~~~~~~~~~ 636 (5163)
T PRK12316 566 VAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKL---P------LAAGVQVLDLDRP 636 (5163)
T ss_pred EEeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhC---C------cccCceEEEecCc
Confidence 999999999999999999999999999999999999999999999999987532110 0 0001111222110
Q ss_pred CCCCCCCCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCC
Q 005501 318 GNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG 397 (693)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 397 (693)
. ....... ...+.....++++|||+|||||||+||||+++|+++.+.+.+....++++++
T Consensus 637 ~---------------~~~~~~~-----~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~ 696 (5163)
T PRK12316 637 A---------------AWLEGYS-----EENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVG 696 (5163)
T ss_pred c---------------hhhccCC-----CCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhcCCCCC
Confidence 0 0000000 1111223467899999999999999999999999999999999999999999
Q ss_pred CEEEEeCCccccchhHHHHHHHHcCCEEEEecC--CCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccE
Q 005501 398 DVYCWPTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRS 475 (693)
Q Consensus 398 d~~l~~~~~~~~~~~~~~~~~L~~G~~lvi~~~--~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~ 475 (693)
|++++++|++|+++++++|.+|++|+++++++. ..++..+++.|++++||++.++|++++.|++... ..++++||.
T Consensus 697 d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~ 774 (5163)
T PRK12316 697 DTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--VASCTSLRR 774 (5163)
T ss_pred CEEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--cccCCCccE
Confidence 999999999999999999999999999999864 3578899999999999999999999999987532 335789999
Q ss_pred EEeecCCCCcchHHHHHhhCCCCceecccccccccceeccCCc-CCCCccCccCCCCCCceEEEECCCCCCCCCCCCcee
Q 005501 476 FASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVG 554 (693)
Q Consensus 476 v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giG 554 (693)
+++|||++++++.+.+.+.+++++++|.||+||+++.++.... .......++|+|++|++++|+|++++++|.|+. |
T Consensus 775 ~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~--G 852 (5163)
T PRK12316 775 IVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPVPVGVL--G 852 (5163)
T ss_pred EEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEECCCCCCCCCCCc--e
Confidence 9999999999999998888788899999999999864433222 223345689999999999999999999999995 9
Q ss_pred eEEE-----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHH
Q 005501 555 EVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 629 (693)
Q Consensus 555 el~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~ 629 (693)
||+| +.||++ +++.|+++|..+|+.+|.+||+|||+|++++||+|+|+||+|+|||++|+||+|+|||+
T Consensus 853 El~i~G~~v~~GYl~------~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~ 926 (5163)
T PRK12316 853 ELYLAGRGLARGYHG------RPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEA 926 (5163)
T ss_pred EEEecccccChhhCC------ChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHH
Confidence 9998 568887 56689999999998888999999999999999999999999999999999999999999
Q ss_pred HHhccCcccceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 630 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 630 ~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
+|. +||+|++|+|++.+ + +.++|||++.++...+.++++++++++||+||+|..++.
T Consensus 927 ~l~-~~p~V~~a~V~~~~----~-~~lva~vv~~~~~~~~~~~l~~~l~~~Lp~y~vP~~i~~ 983 (5163)
T PRK12316 927 RLL-EHPWVREAAVLAVD----G-KQLVGYVVLESEGGDWREALKAHLAASLPEYMVPAQWLA 983 (5163)
T ss_pred HHH-hCCCcceEEEEEcC----C-CeEEEEEEccCCCCCCHHHHHHHHHhhCCCccCCCeEEE
Confidence 995 99999999999875 4 799999999876666778999999999999999998875
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-79 Score=759.56 Aligned_cols=617 Identities=18% Similarity=0.164 Sum_probs=486.7
Q ss_pred HHcCCCchhhHHHHHHHHHHHhhccCC-ChhhHHHHHHHhHhcCCCCCCCCchhhhHHHhhhcccCCCCCCcccc----C
Q 005501 14 MKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPPLYWF----P 88 (693)
Q Consensus 14 ~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~~~~~~----~ 88 (693)
++++++.....+|.++|+++++...++ +||+|||++ |++.++..+ +..|+||++|++++.......... .
T Consensus 297 lplr~~~~~~~tf~~~l~~~~~~~~~~~~h~~~p~~~-i~~~l~~~~----~~~~lf~~~~~~~~~~~~~~~~~~~~~~~ 371 (1296)
T PRK10252 297 LPLRVHIAAQETLPELATRLAAQLKKMRRHQRYDAEQ-IVRDSGRAA----GDEPLFGPVLNIKVFDYQLDFPGVQAQTH 371 (1296)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHhhcCCCHHH-HHHHhcCcc----CCCCceeEEEEeeecccccCcCCccceee
Confidence 345677778889999999999999888 999999999 999997433 344669999999875432111000 0
Q ss_pred CcccccccchHHHHH-HhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcccceeccceee--ccCCCCCCCC
Q 005501 89 SLDQSKLTNLGNALE-IHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKHG 164 (693)
Q Consensus 89 ~~~~~~~~dl~~~~~-~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~~ 164 (693)
.......+||++.+. +.++++...+ |++ ++|++.+++++.++|..+|+++..+++.+...+ +...+... .
T Consensus 372 ~~~~~~~~dl~l~~~~~~~~~l~~~~~y~~-----~~f~~~~i~~l~~~~~~ll~~~~~~p~~~i~~~~~~~~~~~~~-~ 445 (1296)
T PRK10252 372 TLATGPVNDLELALFPDEHGGLSIEILANP-----QRYDEATLIAHAERLKALIAQFAADPALLCGDVDILLPGEYAQ-L 445 (1296)
T ss_pred ecCCCccCCeEEEEEECCCCcEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHhCCCCChhhcCCCCHHHHHH-H
Confidence 001112347776665 3356777888 998 999999999999999999999987776665443 22211111 2
Q ss_pred CCcCCCCccchhhhhcc-CcccCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC
Q 005501 165 GTWLPGSVLNIAECCLL-PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM 242 (693)
Q Consensus 165 ~~~~~~~~~~~~~~~l~-~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~ 242 (693)
..|+..........+.+ ...+++++|+++|+++.+. ++||+||+++++++|++|.+. +++|++|+|+++|
T Consensus 446 ~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~ 517 (1296)
T PRK10252 446 AQVNATAVEIPETTLSALVAQQAAKTPDAPALADARY--------QFSYREMREQVVALANLLRERGVKPGDSVAVALPR 517 (1296)
T ss_pred HHhcCCCCCCCcCCHHHHHHHHHHhCCCCeEEEcCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCC
Confidence 33443322211111111 1234578999999998877 999999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCC
Q 005501 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG 322 (693)
Q Consensus 243 s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (693)
++++++++|||+++|++|+|+||.+|.+++.+++++++++++|++......... .+. ....
T Consensus 518 ~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~----------~~~-~~~~-------- 578 (1296)
T PRK10252 518 SVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFAD----------VPD-LTSL-------- 578 (1296)
T ss_pred CHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhccc----------CCC-ceee--------
Confidence 999999999999999999999999999999999999999999998753211100 000 0000
Q ss_pred CCCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEE
Q 005501 323 IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCW 402 (693)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~ 402 (693)
.+........ ........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++
T Consensus 579 --------~~~~~~~~~~------~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~~~~~~d~~l~ 644 (1296)
T PRK10252 579 --------CYNAPLAPQG------AAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTADDVVLQ 644 (1296)
T ss_pred --------eccccccccc------CCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 0000000000 00111235789999999999999999999999999999999999999999999999
Q ss_pred eCCccccchhHHHHHHHHcCCEEEEecC--CCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCC--CCCCccccEEEe
Q 005501 403 PTNLGWVMGPVILFSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFAS 478 (693)
Q Consensus 403 ~~~~~~~~~~~~~~~~L~~G~~lvi~~~--~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~~lr~v~~ 478 (693)
.+|++|+++++++|.+|+.|+++++.+. ..++..+++.|++++||++.++|+++..+++..... ...++++|.+++
T Consensus 645 ~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~ 724 (1296)
T PRK10252 645 KTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFC 724 (1296)
T ss_pred eCCcchhhhHHHHHHHHhCCCEEEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEE
Confidence 9999999999999999999999999864 347889999999999999999999999988653222 234678999999
Q ss_pred ecCCCCcchHHHHHhhCCCCceecccccccccceeccCCcCC------CCccCccCCCCCCceEEEECCCCCCCCCCCCc
Q 005501 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ------PQAFGAFSTATMTAGLVILDECGVPYPDDQPC 552 (693)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~------~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~g 552 (693)
|||++++++.+.+.+.+ +++++|.||+||+++.++...... .....++|+|++|++++|+|++++++|.|++
T Consensus 725 gGe~l~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~g~~- 802 (1296)
T PRK10252 725 SGEALPADLCREWQQLT-GAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARMRPVPPGVA- 802 (1296)
T ss_pred ecCCCCHHHHHHHHhcC-CCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEECCCCCCCCCCCc-
Confidence 99999999998887764 688999999999987655433221 2234689999999999999999999999995
Q ss_pred eeeEEE-----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHH
Q 005501 553 VGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627 (693)
Q Consensus 553 iGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eI 627 (693)
|||+| +.||++ +++.|+++|..+|+.+|.+||+|||+|++++||+++|+||+|+|||++|+||+|.||
T Consensus 803 -Gel~i~g~~~~~GY~~------~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eI 875 (1296)
T PRK10252 803 -GDLYLTGIQLAQGYLG------RPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEI 875 (1296)
T ss_pred -eEEEecccccchhhCC------CcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHH
Confidence 99998 568887 556899999999988889999999999999999999999999999999999999999
Q ss_pred HHHHhccCcccceeEEEeec----CCC-CCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 628 ERVCDQADESILETAAISVS----PAG-GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 628 E~~L~~~~p~V~~a~Vv~~~----~~~-~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
|++|. +||+|.+|+|++.. +.. ++...+++||+...+...+.++|+++++++||.||+|..++.
T Consensus 876 E~~l~-~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~~~~P~~~~~ 944 (1296)
T PRK10252 876 DRAMQ-ALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQAQLRERLPPHMVPVVLLQ 944 (1296)
T ss_pred HHHHH-hCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCCCCHHHHHHHHHhhCchhcCCcEEEE
Confidence 99995 99999999887652 111 222589999999877666788999999999999999998875
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-79 Score=818.16 Aligned_cols=624 Identities=16% Similarity=0.163 Sum_probs=498.6
Q ss_pred CCcccccChhHHHHcCCCchhh---HHHHHHHHHHHhhccCC-ChhhHHHHHHHhHhcCCCCCCCCchhhhHHHhhhccc
Q 005501 2 GKNIREVGVEDLMKVGLKLEEA---EEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDA 77 (693)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~---~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~ 77 (693)
|-.||.+| .+++..+. .++.++|+++++...++ +||++||++ |++..+..+. . ||||++|++||
T Consensus 3547 G~fiNtlp------~Rv~~~~~~~~~t~~~~L~~v~~~~~~~~~~q~~~l~~-i~~~~~~~~~---~--~LF~t~~v~~n 3614 (4334)
T PRK05691 3547 GLFINSIA------LRVQLPAAGQRCSVRQWLQGLLDSNMELREYEYLPLVA-IQECSELPKG---Q--PLFDSLFVFEN 3614 (4334)
T ss_pred cccccccc------eEEeeCCccCCCcHHHHHHHHHHHHHHHhhccCCCHHH-HHHHhcCCCC---C--CCccEEEEeec
Confidence 44455554 45565543 69999999999998888 999999999 9988765332 3 56999999998
Q ss_pred CCCCCCc------cc--cCCcccccccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhccccee
Q 005501 78 SIKGPPL------YW--FPSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFR 148 (693)
Q Consensus 78 ~~~~~~~------~~--~~~~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~ 148 (693)
....... .. .......++|+|++.+.. ++.+...+ |++ ++|++.++++|.++|.++|+++...+.
T Consensus 3615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~l~~~l~y~~-----~~~~~~~~~~l~~~f~~~L~~l~~~~~ 3688 (4334)
T PRK05691 3615 APVEVSVLDRAQSLNASSDSGRTHTNFPLTAVCYP-GDDLGLHLSYDQ-----RYFDAPTVERLLGEFKRLLLALVQGFH 3688 (4334)
T ss_pred CCcchhhhcccccccccccccccccCCCeEEEEec-CCceEEEEEEch-----hhCCHHHHHHHHHHHHHHHHHHHhCcC
Confidence 7533210 00 011124467778775543 45677777 998 999999999999999999999987777
Q ss_pred ccceee--ccCCCCCCCCCCcCCCCccchhhhhccC--cccCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHH
Q 005501 149 EAPKCI--LDRTDKSKHGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVAN 224 (693)
Q Consensus 149 ~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~ 224 (693)
.+...+ +...+.......|+..........+++. +.|++++||++|+++.+. ++||+||+++++++|+
T Consensus 3689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Av~~~~~--------~~tY~eL~~~~~~la~ 3760 (4334)
T PRK05691 3689 GDLSELPLLGEQERDFLLDGCNRSERDYPLEQSYVRLFEAQVAAHPQRIAASCLDQ--------QWSYAELNRAANRLGH 3760 (4334)
T ss_pred CChhhcCCCCHHHHHHHHHhhCCccCCCccccCHHHHHHHHHHhCCCceEEEcCCC--------cccHHHHHHHHHHHHH
Confidence 766554 2322222334467665444444444443 457789999999999888 9999999999999999
Q ss_pred HHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhH
Q 005501 225 ALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303 (693)
Q Consensus 225 ~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~ 303 (693)
+|++. +++|++|+|++++|+++++++|||+|+|++||||||++|.+|+.+++++++++++|++....... ..+
T Consensus 3761 ~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~------~~~ 3834 (4334)
T PRK05691 3761 ALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQA------RAL 3834 (4334)
T ss_pred HHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchh------hhh
Confidence 99999 99999999999999999999999999999999999999999999999999999999998643211 111
Q ss_pred hhcCC----CceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecch
Q 005501 304 LGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQL 379 (693)
Q Consensus 304 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~ 379 (693)
.+... ..+++. ++...... ....+.....++++|||+|||||||+||||+++|+
T Consensus 3835 ~~~~~~~~~~~~~~~------------------~~~~~~~~----~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~ 3892 (4334)
T PRK05691 3835 LDELGCANRPRLLVW------------------EEVQAGEV----ASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQR 3892 (4334)
T ss_pred hcccccccccceeee------------------cccccccc----cccCCCCCCCCCceEEEEECCCCCCCCCEEEeehH
Confidence 11110 011111 11100000 01112234567999999999999999999999999
Q ss_pred hHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHcCCEEEEecCC--CChhhHHHHHHHcCCcEEeechHHHH
Q 005501 380 SSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVK 457 (693)
Q Consensus 380 ~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvi~~~~--~~~~~~~~~i~~~~vt~l~~~P~~l~ 457 (693)
++++.+.+....++++++|+++++++++||.+++++|.+|+.|+++++++.. .++..+++.+++++||++.++|++++
T Consensus 3893 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~ 3972 (4334)
T PRK05691 3893 GMLNNQLSKVPYLALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQ 3972 (4334)
T ss_pred HHHHHHHHHHHhcCCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHH
Confidence 9999999998999999999999999999999999999999999999998753 36789999999999999999999999
Q ss_pred HHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceecccccccccceeccCCcC---CCCccCccCCCCCCc
Q 005501 458 AWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTA 534 (693)
Q Consensus 458 ~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~ 534 (693)
.++... ...+++||.+++|||++++++.+.|.+..++++++|.||+|||++.++..... ......+||+|++|+
T Consensus 3973 ~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~ 4049 (4334)
T PRK05691 3973 GMLAED---RQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNN 4049 (4334)
T ss_pred HHHhhc---cccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCC
Confidence 987643 23478999999999999999998888888889999999999999765543321 122346899999999
Q ss_pred eEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccccccccccccccC-CCceeeeecceEEEecCCcEEEE
Q 005501 535 GLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMY-KGMCLRRHGDIIKRTVGGYIIVQ 608 (693)
Q Consensus 535 ~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~-~g~~~yrTGDl~~~~~dG~l~~~ 608 (693)
+++|+|++++++|.|.+ |||+| ++||++ ++++|+++|+.+|+. +|.|||||||+|+|++||+|+|+
T Consensus 4050 ~~~v~d~~~~~~p~g~~--GEL~i~G~~v~~GY~~------~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~ 4121 (4334)
T PRK05691 4050 RLYLLDEALELVPLGAV--GELCVAGTGVGRGYVG------DPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYV 4121 (4334)
T ss_pred EEEEECCCCCCCCCCCc--eEEEEecccccccccC------CcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEe
Confidence 99999999999999995 99998 678888 666999999999984 57899999999999999999999
Q ss_pred eecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecCCCCC---ChHHHHHHHHHHHHhhc
Q 005501 609 GRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS---QPDKLKMIFSKAIQSKL 685 (693)
Q Consensus 609 GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~---~~~~l~~~l~~~L~~~m 685 (693)
||+|+|||+||+||+++|||++|. ++|+|.+|+|+... ...+ +.++||++...+... ..++++++|+++||.||
T Consensus 4122 GR~d~qvki~G~riel~eIE~~l~-~~~~v~~a~v~~~~-~~~~-~~l~a~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ym 4198 (4334)
T PRK05691 4122 GRIDHQVKIRGYRIELGEIEARLH-EQAEVREAAVAVQE-GVNG-KHLVGYLVPHQTVLAQGALLERIKQRLRAELPDYM 4198 (4334)
T ss_pred cccCCcEEeceEEecHHHHHHHHH-hCCCccEEEEEEec-CCCC-cEEEEEEeCCcccccchHHHHHHHHHHHhhCChhh
Confidence 999999999999999999999995 99999999887654 3445 799999998764322 23679999999999999
Q ss_pred CCCceecC
Q 005501 686 NPLFKVWC 693 (693)
Q Consensus 686 ~P~~~v~~ 693 (693)
+|.+++.+
T Consensus 4199 vP~~~~~~ 4206 (4334)
T PRK05691 4199 VPLHWLWL 4206 (4334)
T ss_pred cCcceeec
Confidence 99998753
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-77 Score=642.96 Aligned_cols=478 Identities=27% Similarity=0.421 Sum_probs=407.7
Q ss_pred CcCCCCccchhhhhccCcccCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCC
Q 005501 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMT 243 (693)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i~~~~s 243 (693)
+|+.++.+|.++++++++... ..+|++|+++.++. .+. +++||+||.+.++++|+.|++. + +||||+|++|++
T Consensus 1 ~wf~~~~lN~~~n~~dr~~~~-~~~~~~aii~~~e~--~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~ 75 (528)
T COG0365 1 KWFEGGTLNLALNALDRHLEA-DRPDDTAIIFDGED--GLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNS 75 (528)
T ss_pred CCcCCceeechhhhhhhhhhc-cCCCceEEEEEcCC--CCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCC
Confidence 599999999999999987532 34899999999762 122 6999999999999999999975 7 999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCC
Q 005501 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI 323 (693)
Q Consensus 244 ~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (693)
++.+++||||+|+||+++|+.+.++++.++++++++++++||+++...+.++..+....+.+.... ++++....
T Consensus 76 pe~~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~-~iv~~r~~----- 149 (528)
T COG0365 76 PEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSS-VVVVPRLG----- 149 (528)
T ss_pred HHHHHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcc-eEEecccc-----
Confidence 999999999999999999999999999999999999999999999999888888877766665544 44443221
Q ss_pred CCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHH-HHhchhcCCCCCCEEEE
Q 005501 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT-AEGWAHIDLKVGDVYCW 402 (693)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~ 402 (693)
.+|.+....... .......+++|+++|+|||||||+||||+++|++++... ......+++.++|++++
T Consensus 150 ------~~~~~~~~~~~~-----~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~ 218 (528)
T COG0365 150 ------LWYDEAVEKASE-----KFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWN 218 (528)
T ss_pred ------ccHHHHhhccCC-----CCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEe
Confidence 567777665432 233344788999999999999999999999999865444 44445788889999999
Q ss_pred eCCccccchhHH-HHHHHHcCCEEEEecCCCC--hhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEee
Q 005501 403 PTNLGWVMGPVI-LFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAST 479 (693)
Q Consensus 403 ~~~~~~~~~~~~-~~~~L~~G~~lvi~~~~~~--~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~g 479 (693)
.++++|.++.+. ++++|++|++++++++.++ +..++++|+++++|.++++|+.+++|.+.+....+++++||.+.++
T Consensus 219 ~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~Sa 298 (528)
T COG0365 219 SSDPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSA 298 (528)
T ss_pred CCCchhhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeecc
Confidence 999999999965 8999999999999987665 7899999999999999999999999999876667889999999999
Q ss_pred cCCCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEEe
Q 005501 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF 559 (693)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v~ 559 (693)
||+|+++.++|+.+.+ +++|.+.||+||+++++....+ +...++.|+|+||+++.|+|++|+++++|+ |+|++.
T Consensus 299 GEPLnpe~~~w~~~~~-g~~i~d~~gqTEtg~~~~~~~~--~~~~g~~g~p~pG~~~~vvdd~g~~~~~~~---G~Lvi~ 372 (528)
T COG0365 299 GEPLNPEAFEWFYSAL-GVWILDIYGQTETGMGFIAGRP--PVKNGSSGLPLPGYAVRRVDDEGNPVPPGV---GELVVR 372 (528)
T ss_pred CCCCCHHHHHHHHHHh-CCCEeccccccccCccccCCCC--CcCCCCCCCCCCCceeEEECCCCCcCCCCc---eEEEEe
Confidence 9999999999999887 4999999999999977666655 444555599999999999999999999997 899993
Q ss_pred c-------ccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHh
Q 005501 560 P-------LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (693)
Q Consensus 560 ~-------gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~ 632 (693)
. +|++ +++.+.+.|.. . ||.|||.+++|+||+++|+||.||+||+.|+||.+.|||++|.
T Consensus 373 ~~~p~~~~~~w~------d~er~~~~y~~------~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~ 439 (528)
T COG0365 373 LPWPGMALTYWN------DPERYKEAYFG------R-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLL 439 (528)
T ss_pred CCCchhhhhhhC------CHHHHHHHHhh------c-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHH
Confidence 2 4555 33344333321 1 9999999999999999999999999999999999999999997
Q ss_pred ccCcccceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCC
Q 005501 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 688 (693)
Q Consensus 633 ~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~ 688 (693)
+||+|.||+||+++|+..| +.++|||++++|...+ +|++.|++++.+.+.|.
T Consensus 440 -~hP~VaEaAvVg~pd~~kg-~~v~afVvL~~g~~~~--~L~~ei~~~vr~~~~~~ 491 (528)
T COG0365 440 -AHPAVAEAAVVGVPDPGKG-QIVLAFVVLAAGVEPN--ELAEEIRRHVARNIGPH 491 (528)
T ss_pred -hCcceeeeEEEeccCCCCC-cEEEEEEEecCCCChH--HHHHHHHHHHHhccCcc
Confidence 9999999999999999888 9999999999987665 77777777666555553
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-79 Score=757.63 Aligned_cols=640 Identities=16% Similarity=0.122 Sum_probs=490.1
Q ss_pred HHHcCCCchhhHHHHHHHHHHHhhccCC-ChhhHHHHHHHhHhcCCCCCCCCchhhhHHHhhhcccCCCCCCccccCCcc
Q 005501 13 LMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPPLYWFPSLD 91 (693)
Q Consensus 13 ~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~~~~~~~~~~ 91 (693)
.+++++++++..+|.++|+++++...++ +||++||++ |++.+++.|+.++++ |+||++|..+...... ...
T Consensus 81 ~lplr~~~~~~~t~~~~l~~~~~~~~~~~~h~~~p~~~-i~~~l~~~~~~~~~p-~lf~~~~~~~~~~~~~------~~~ 152 (1389)
T TIGR03443 81 PFVLRLNITPELSFLQLYAKVSEEEKEGASDIGVPFDE-LSEHIQAAKKLERTP-PLFRLAFQDAPDNQQT------TYS 152 (1389)
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHHhcccCCHHH-HHHHhccccCCCCCC-ccEEEEeecCCccccc------ccc
Confidence 4578889999999999999999999888 999999999 999999988866555 4799776543321111 113
Q ss_pred cccccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcccceeccceee--ccCCCCCCC-----
Q 005501 92 QSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSKH----- 163 (693)
Q Consensus 92 ~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~~----- 163 (693)
..+++||.+.+.+.++++...+ |+. ++|++++++++.++|..+|+++...++.+...+ +...+....
T Consensus 153 ~~~~~dl~~~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~f~~lL~~~~~~p~~~l~~l~~~~~~~~~~~~~~~~ 227 (1389)
T TIGR03443 153 TGSTTDLTVFLTPSSPELELSIYYNS-----LLFSSDRITIVADQLAQLLSAASSNPDEPIGKVSLITPSQKSLLPDPTK 227 (1389)
T ss_pred cCCccceEEEEEecCCcEEEEEEEch-----hcCCHHHHHHHHHHHHHHHHHHHhCcCCceecccCCCHHHHhhhhcccc
Confidence 4578899999888888899999 999 999999999999999999999987777776553 222211110
Q ss_pred CCCcCCCCccchhhhhccCcccCCCCCCcEEEEEecCCC-CCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcC
Q 005501 164 GGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRC-DESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMP 241 (693)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~-~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~ 241 (693)
...|... . ......+. .+|+++|+++|+++..... .....+++||+||+++++++|++|++. +++|++|+|+++
T Consensus 228 ~~~~~~~-~-~~l~~~~~--~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~ 303 (1389)
T TIGR03443 228 DLDWSGF-R-GAIHDIFA--DNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAY 303 (1389)
T ss_pred ccCcCcc-c-CcHHHHHH--HHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEec
Confidence 1123211 0 11122232 3457899999998742210 011234899999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCC-----CceEEEcC
Q 005501 242 MTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-----LKAIVLPA 316 (693)
Q Consensus 242 ~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 316 (693)
|++++++++|||+++|++|+|+||.+|.+++.+++++++++++|++..... ............. ...+.+..
T Consensus 304 ~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1389)
T TIGR03443 304 RGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGT---LDQLVRDYIDKELELRTEIPALALQD 380 (1389)
T ss_pred CCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccc---cchhhhhhhhcccccccccceEEecc
Confidence 999999999999999999999999999999999999999999998764210 0011111110000 00111110
Q ss_pred CCCCCCCCCCCCccc--HHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCC
Q 005501 317 IGNDVGIPLREQDLS--WKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDL 394 (693)
Q Consensus 317 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~ 394 (693)
.... ..+... ..+....... ...........++++|||+|||||||+||||+++|+++.+.+.+....+++
T Consensus 381 ~~~~-----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~ 453 (1389)
T TIGR03443 381 DGSL-----VGGSLEGGETDVLAPYQA--LKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRFGL 453 (1389)
T ss_pred cccc-----cccccccccccccccccc--cccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhcCC
Confidence 0000 000000 0011100000 000011123457899999999999999999999999999999888888999
Q ss_pred CCCCEEEEeCCccccchhHHHHHHHHcCCEEEEecCC--CChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCcc
Q 005501 395 KVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472 (693)
Q Consensus 395 ~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvi~~~~--~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~ 472 (693)
.++|+++++++++|+.+++++|.+|+.|+++++++.. .++..+++.|++++||++.++|++++.|.... ...+++
T Consensus 454 ~~~d~~~~~~~~~~d~~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~ 530 (1389)
T TIGR03443 454 SENDKFTMLSGIAHDPIQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPS 530 (1389)
T ss_pred CCCCEEEEecCceecchHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCC
Confidence 9999999999999999999999999999999998643 25778999999999999999999999987542 234789
Q ss_pred ccEEEeecCCCCcchHHHHHhhCCCCceecccccccccceeccCCcCC----------CCccCccCCCCCCceEEEECCC
Q 005501 473 IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLVILDEC 542 (693)
Q Consensus 473 lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~ild~~ 542 (693)
||.+++|||++++...+++....++++++|.||+||++...+...... .....++|+|++|++++|+|++
T Consensus 531 lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~ 610 (1389)
T TIGR03443 531 LHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRN 610 (1389)
T ss_pred ccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCc
Confidence 999999999999999888887777889999999999987554322110 0124689999999999999965
Q ss_pred --CCCCCCCCCceeeEEE-----ecccCCCcccccccccccccccccccC----------------------CCceeeee
Q 005501 543 --GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMY----------------------KGMCLRRH 593 (693)
Q Consensus 543 --~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~----------------------~g~~~yrT 593 (693)
++++|.|++ |||+| +.||++ +++.|+++|..+++. ++.+||+|
T Consensus 611 ~~~~~~~~G~~--GEL~i~G~~v~~GY~~------~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~T 682 (1389)
T TIGR03443 611 DRTQTCGVGEV--GEIYVRAGGLAEGYLG------LPELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRT 682 (1389)
T ss_pred cCCCcCCCCCc--eEEEecccccchhcCC------ChhHhhhhccCCcccCcccccccccccccccccccCCCccceeec
Confidence 578999995 99998 578887 566899999876541 24689999
Q ss_pred cceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecCCC-CC----
Q 005501 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF-TS---- 668 (693)
Q Consensus 594 GDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~-~~---- 668 (693)
||+|++++||+|+|+||.|||||++|+||+|.|||++|. +||+|.+++|++.++...+ +.++|||++..+. ..
T Consensus 683 GDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~-~~p~V~~a~v~~~~~~~~~-~~lva~vv~~~~~~~~~~~~ 760 (1389)
T TIGR03443 683 GDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLS-QHPLVRENVTLVRRDKDEE-PTLVSYIVPQDKSDELEEFK 760 (1389)
T ss_pred CCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHH-hCcchheeEEEEeeCCCCC-eEEEEEEeccCccccccccc
Confidence 999999999999999999999999999999999999995 9999999999998877666 8999999986321 10
Q ss_pred ---------------------ChHHHHHHHHHHHHhhcCCCceec
Q 005501 669 ---------------------QPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 669 ---------------------~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
...+++++++++||.||+|..++.
T Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~ 805 (1389)
T TIGR03443 761 SEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTVIVP 805 (1389)
T ss_pred cccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCCceEEE
Confidence 135799999999999999998764
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-78 Score=807.49 Aligned_cols=622 Identities=14% Similarity=0.140 Sum_probs=497.8
Q ss_pred HHcCCCchhhHHHHHHHHHHHhhccCC-ChhhHHHHHHHhHhcCCCCCCCCchhhhHHHhhhcccCCCCC-----Cc--c
Q 005501 14 MKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP-----PL--Y 85 (693)
Q Consensus 14 ~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~-----~~--~ 85 (693)
+++++++++..+|.++|+++++...++ +||++||++ |++.|++.|+.+.++ |||+||++++..... .. .
T Consensus 2021 lPlrv~~~~~~t~~~ll~~v~~~~~~~~~hq~~p~~~-iv~~l~~~r~~~~~p--lf~~~~~~~~~~~~~~~~~~~~~~~ 2097 (4334)
T PRK05691 2021 QVLRCQLDGQMSVSELLEQVRQTVIEGQSHQDLPFDH-LVEALQPPRSAAYNP--LFQVMCNVQRWEFQQSRQLAGMTVE 2097 (4334)
T ss_pred eeEEeecCCCCCHHHHHHHHHHHHHHHHhcccCCHHH-HHHHhccccccCCCC--ceEEEEEeeccccccccCCCCceeE
Confidence 456788888999999999999999888 999999999 999999999866555 599999998753211 11 1
Q ss_pred ccCCcccccccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcccceeccceee--ccCCCCCC
Q 005501 86 WFPSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSK 162 (693)
Q Consensus 86 ~~~~~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~ 162 (693)
........++|||.+.+.+.++++...+ |+. ++|++++++++.++|.++|+++...++.+...+ +...+...
T Consensus 2098 ~~~~~~~~~~~dL~l~v~~~~~~l~l~~~y~~-----~lf~~~~i~~l~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 2172 (4334)
T PRK05691 2098 YLVNDARATKFDLNLEVTDLDGRLGCCLTYSR-----DLFDEPRIARMAEHWQNLLEALLGDPQQRLAELPLLAAAEQQQ 2172 (4334)
T ss_pred eecccCCccccceEEEEEecCCcEEEEEEECc-----ccCCHHHHHHHHHHHHHHHHHHHhhhcCChhhccCCcHHHHHH
Confidence 1112234678999998888788888888 999 999999999999999999999977766665443 22222111
Q ss_pred CCCCcCCCCccchhhhhccC--cccCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEE
Q 005501 163 HGGTWLPGSVLNIAECCLLP--SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239 (693)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~--~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~ 239 (693)
....|+..........+++. ..+++++|+++|+++.++ ++||+||+++++++|++|++. +++|++|+++
T Consensus 2173 l~~~~~~~~~~~~~~~~l~~~~~~~a~~~p~~~Av~~~~~--------~lTY~eL~~~~~~lA~~L~~~Gv~~g~~V~l~ 2244 (4334)
T PRK05691 2173 LLDSLAGEAGEARLDQTLHGLFAAQAARTPQAPALTFAGQ--------TLSYAELDARANRLARALRERGVGPQVRVGLA 2244 (4334)
T ss_pred HHHHhCCCCcCCCcccchHHHHHHHHHHCCCCeEEEeCCe--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 12233333222222223332 346689999999999877 999999999999999999999 9999999999
Q ss_pred cCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCc--eEEEcCC
Q 005501 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAI 317 (693)
Q Consensus 240 ~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 317 (693)
++||+++++++|||+|+|++|||+||.+|.+|+.+++++++++++|++....... ...... .+.+...
T Consensus 2245 ~~~s~~~vv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~ 2314 (4334)
T PRK05691 2245 LERSLEMVVGLLAILKAGGAYVPLDPEYPLERLHYMIEDSGIGLLLSDRALFEAL----------GELPAGVARWCLEDD 2314 (4334)
T ss_pred eCCCHHHHHHHHHHHHhCcEeecCCCCChHHHHHHHHHhcCCCEEEeChhhhhhh----------ccccccceeEEeccc
Confidence 9999999999999999999999999999999999999999999999987532111 000000 1111000
Q ss_pred CCCCCCCCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCC
Q 005501 318 GNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG 397 (693)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 397 (693)
...+ .... .........++++|||+|||||||+||||+++|+++.+.+.+....++++++
T Consensus 2315 --------------~~~~-~~~~-----~~~~~~~~~~~~~a~ii~TSGSTG~PKGV~~~h~~l~~~~~~~~~~~~~~~~ 2374 (4334)
T PRK05691 2315 --------------AAAL-AAYS-----DAPLPFLSLPQHQAYLIYTSGSTGKPKGVVVSHGEIAMHCQAVIERFGMRAD 2374 (4334)
T ss_pred --------------hhhh-hcCC-----CCCCCCCCCCCCcEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCcc
Confidence 0000 0000 0011122356899999999999999999999999999999988889999999
Q ss_pred CEEEEeCCccccchhHHHHHHHHcCCEEEEecC-CCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEE
Q 005501 398 DVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSF 476 (693)
Q Consensus 398 d~~l~~~~~~~~~~~~~~~~~L~~G~~lvi~~~-~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v 476 (693)
|+++++++++|+.+++++|.+|+.|+++++.+. ..++..+++.|+++++|++.++|++++.|...... .....+||.+
T Consensus 2375 d~~l~~~~~~fd~~~~~i~~~L~~G~~lvl~~~~~~~~~~l~~~i~~~~vt~~~~tPs~~~~l~~~~~~-~~~~~~lr~i 2453 (4334)
T PRK05691 2375 DCELHFYSINFDAASERLLVPLLCGARVVLRAQGQWGAEEICQLIREQQVSILGFTPSYGSQLAQWLAG-QGEQLPVRMC 2453 (4334)
T ss_pred cEEEEecCccHHHHHHHHHHHHhCCCEEEECCcccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHHhhhc-cccCCCceEE
Confidence 999999999999999999999999999999764 34788999999999999999999999999765322 2345679999
Q ss_pred EeecCCCCcchHHHHHhhCCCCceecccccccccceeccCCcC----CCCccCccCCCCCCceEEEECCCCCCCCCCCCc
Q 005501 477 ASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 552 (693)
Q Consensus 477 ~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~g 552 (693)
++|||++++++.+++.+.++...++|.||+||+++..+.+... ......++|+|++|+.++|+|++++++|.|++
T Consensus 2454 ~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~pi~~~~~~i~d~~~~~vp~G~~- 2532 (4334)
T PRK05691 2454 ITGGEALTGEHLQRIRQAFAPQLFFNAYGPTETVVMPLACLAPEQLEEGAASVPIGRVVGARVAYILDADLALVPQGAT- 2532 (4334)
T ss_pred EEccccCCHHHHHHHHHhCCCceEEeCcCCCcceEEEEEeecccccccCCCCCccccccCCCEEEEECCCCCCCCCCCc-
Confidence 9999999999999998887777899999999998654332211 11223579999999999999999999999995
Q ss_pred eeeEEE-----ecccCCCcccccccccccccccccccC-CCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHH
Q 005501 553 VGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMY-KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE 626 (693)
Q Consensus 553 iGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~-~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~e 626 (693)
|||+| +.||++ +++.|+++|+.+|+. .|.|||+|||+|++++||+++|+||+|+|||++|+||+|+|
T Consensus 2533 -GEL~i~G~~v~~GY~~------~~~~t~~~F~~~p~~~~~~r~y~TGDl~~~~~dG~l~~~GR~d~qvki~G~rIe~~E 2605 (4334)
T PRK05691 2533 -GELYVGGAGLAQGYHD------RPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGE 2605 (4334)
T ss_pred -eEEEecccccCccccC------ChhhhhhhccCCCCCCCCCceEeccceEEEcCCCCEEEeecccCeEEeeeEEechHH
Confidence 99998 578887 566899999999885 47789999999999999999999999999999999999999
Q ss_pred HHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecCC------CCCChHHHHHHHHHHHHhhcCCCceecC
Q 005501 627 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG------FTSQPDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 627 IE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~------~~~~~~~l~~~l~~~L~~~m~P~~~v~~ 693 (693)
||++|. +||+|.+|+|++.+++ .+ +.++||++.... .....++++++++++||.||+|..++.+
T Consensus 2606 IE~~l~-~~p~V~~a~V~~~~~~-~~-~~lva~vv~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~v 2675 (4334)
T PRK05691 2606 IESRLL-EHPAVREAVVLALDTP-SG-KQLAGYLVSAVAGQDDEAQAALREALKAHLKQQLPDYMVPAHLILL 2675 (4334)
T ss_pred HHHHHH-hCCCcceEEEEEeeCC-CC-cEEEEEEEecccccccccccccHHHHHHHHHhhCccccCChhheee
Confidence 999995 9999999999988543 44 789999997432 1223478999999999999999988753
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-74 Score=661.51 Aligned_cols=553 Identities=20% Similarity=0.252 Sum_probs=436.1
Q ss_pred CCCHHHHHHHHhhCHHHHHHHHHhhcccceeccceeeccCCCCCCCCCCcCCCCccchhhhhccCcccCCCCCCcEEEEE
Q 005501 118 ITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVW 197 (693)
Q Consensus 118 ~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~ 197 (693)
+++|+.+++++++++..||..+.+.+ .+|.++++++++.. ....+||.++.+|.+.++++++.....+|+++|+++
T Consensus 7 ~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~---~~~~~wf~~~~~n~~~~~l~~~~~~~~~~~~~A~~~ 82 (647)
T PTZ00237 7 PFDYENDSNYANSNPESFWDEVAKKY-VHWDKMYDKVYSGD---EIYPDWFKGGELNTCYNVLDIHVKNPLKRDQDALIY 82 (647)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHhc-CeeeCCcccccCCC---CCchhhCCCCeeeHHHHHHHHhhcccCCCCceEEEE
Confidence 35688999999999999999999997 68999999998641 223799999999999999988642223799999998
Q ss_pred ecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHH
Q 005501 198 REDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRL 276 (693)
Q Consensus 198 ~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l 276 (693)
.... .+..+++||+||.++++++|+.|+++ |++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++
T Consensus 83 ~~~~--~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l 160 (647)
T PTZ00237 83 ECPY--LKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRI 160 (647)
T ss_pred EcCC--CCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHH
Confidence 6431 12235899999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhcCeeEEEeecceeeCCccccchhhHhhcC------CCceEEEcCCCC--CC------CCCCCCCcccHHHHhcccCCC
Q 005501 277 RVSKAKGIFTQDFILRGGRKFPLYSKVLGAA------PLKAIVLPAIGN--DV------GIPLREQDLSWKDFLSSVDYH 342 (693)
Q Consensus 277 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~ 342 (693)
++++|++||+++...+..+..+....+.+.. ..+++++..... .. ..........|++++......
T Consensus 161 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (647)
T PTZ00237 161 ETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKIKEN 240 (647)
T ss_pred HhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCcccccccccccccCCCcccccHHHHHhhhccc
Confidence 9999999999876655555444433332211 123443322110 00 000011235577765432110
Q ss_pred CCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchh-HHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHc
Q 005501 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS-SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (693)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~-l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~ 421 (693)
............++|++||+|||||||+||||+++|++ +.+........+....++++++.++++|+++...++.+|+.
T Consensus 241 ~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~~~~~~~l~~ 320 (647)
T PTZ00237 241 NQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGSLSL 320 (647)
T ss_pred cCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeHHHHHHHHhC
Confidence 00111222345679999999999999999999999998 44433333445667788999999999999887778899999
Q ss_pred CCEEEEecCCC-C----hhhHHHHHHHcCCcEEeechHHHHHHHhcCc-----CCCCCCccccEEEeecCCCCcchHHHH
Q 005501 422 GATLALYQGSP-L----ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC-----LEGLDWTKIRSFASTGETSNVDDDLWL 491 (693)
Q Consensus 422 G~~lvi~~~~~-~----~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~-----~~~~~l~~lr~v~~gGe~l~~~~~~~~ 491 (693)
|++++++++.. . +..+++.|++++||++.++|++++.|++... ....++++||.+++|||++++++.+++
T Consensus 321 G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~ 400 (647)
T PTZ00237 321 GNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYI 400 (647)
T ss_pred CcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccCCHHHHHHH
Confidence 99999987532 2 5689999999999999999999999987532 134568999999999999999999999
Q ss_pred HhhCCCCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEEe--------cccC
Q 005501 492 SSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF--------PLYL 563 (693)
Q Consensus 492 ~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v~--------~gy~ 563 (693)
++.+ +++++|.||+||++++++..........+++|+|++|++++|+|++|++++.|+. |||++. .||+
T Consensus 401 ~~~~-g~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~ge~--GEl~v~~p~~p~~~~gy~ 477 (647)
T PTZ00237 401 ENKL-KIKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKELNVNEI--GEVAFKLPMPPSFATTFY 477 (647)
T ss_pred HHhc-CCCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEECCCCCCCCCCCc--eEEEEeccCCchhhCcee
Confidence 8876 5899999999999865443333222334789999999999999999999999984 999984 2444
Q ss_pred CCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEE
Q 005501 564 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAA 643 (693)
Q Consensus 564 ~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~V 643 (693)
+ +++.++++|...+ | ||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|
T Consensus 478 ~------~~~~~~~~f~~~~---g--~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~-~~p~V~eaav 545 (647)
T PTZ00237 478 K------NDEKFKQLFSKFP---G--YYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSIL-KHPLVLECCS 545 (647)
T ss_pred C------CHHHHHHHHhCCC---C--EEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHH-hCCCceeeEE
Confidence 4 4456666775322 3 9999999999999999999999999999999999999999996 9999999999
Q ss_pred EeecCCCCCceEEEEEEEecCCC---CCCh----HHHHHHHHHHHHhhcCCCceec
Q 005501 644 ISVSPAGGGPEVLVIFVVLKKGF---TSQP----DKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 644 v~~~~~~~g~~~l~a~vv~~~~~---~~~~----~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
++++++..| +.++|||+++++. ..+. ++|+++++++|+.++.|..++.
T Consensus 546 vg~~~~~~g-~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~ 600 (647)
T PTZ00237 546 IGIYDPDCY-NVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIII 600 (647)
T ss_pred EeeEcCCCC-CEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEEE
Confidence 999998888 8999999998532 2343 3567788888999999988765
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-73 Score=654.19 Aligned_cols=555 Identities=23% Similarity=0.318 Sum_probs=434.6
Q ss_pred CCHHHHHHHHhhCHHHHHHHHHhhcccceeccce--eeccCCCC---CCCCCCcCCCCccchhhhhccCcccCCCCCCcE
Q 005501 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPK--CILDRTDK---SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTV 193 (693)
Q Consensus 119 ~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~--~~l~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~ 193 (693)
.+|+.+++++++++..||..+.+.+ .|.+++. ++++.... .....+||.++.+|.++++++++. ++.+|+++
T Consensus 30 ~~y~~~~~~s~~~~~~fw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~wf~g~~~N~~~~~l~~~~-~~~~~~~~ 106 (666)
T PLN02654 30 QQYMEMYKRSVDDPAGFWSDIASQF--YWKQKWEGDEVCSENLDVRKGPISIEWFKGGKTNICYNCLDRNV-EAGNGDKI 106 (666)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhC--CeecCCCcceEeccCCCcccCCccccccCCCEeeHHHHHHHHhh-ccCCCCCE
Confidence 3578999999999999999999985 4666653 55532111 123579999999999999998864 12589999
Q ss_pred EEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHH
Q 005501 194 AIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (693)
Q Consensus 194 Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l 272 (693)
|+++.+. +.+..+++||+||.++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+++.++.+++
T Consensus 107 Al~~~~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l 184 (666)
T PLN02654 107 AIYWEGN--EPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESL 184 (666)
T ss_pred EEEEEcC--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHH
Confidence 9998543 123346899999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeeEEEeecceeeCCccccchhhHhhcCC---------CceEEEcCCCC--CCCCC-CCCCcccHHHHhcccC
Q 005501 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---------LKAIVLPAIGN--DVGIP-LREQDLSWKDFLSSVD 340 (693)
Q Consensus 273 ~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~ 340 (693)
.+++++++|+++|+++.+.+..+.......+.+... ..++....... ..... .......|+++.....
T Consensus 185 ~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (666)
T PLN02654 185 AQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQEGRDVWWQDVVPNYP 264 (666)
T ss_pred HHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccccccCCcccHHHHhhcCC
Confidence 999999999999999887666655544333322111 01111111100 00000 0112334555543211
Q ss_pred CCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHH-HHHHhchhcCCCCCCEEEEeCCccccchh-HHHHHH
Q 005501 341 YHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR-CTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (693)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (693)
...+.....++|++||+|||||||+||||+++|++++. ........++++++|++++.++++|.++. +.++.+
T Consensus 265 -----~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~ 339 (666)
T PLN02654 265 -----TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGP 339 (666)
T ss_pred -----CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhhhhHHHHHHH
Confidence 11122335679999999999999999999999999754 44445567889999999999999999987 568899
Q ss_pred HHcCCEEEEecCC---CChhhHHHHHHHcCCcEEeechHHHHHHHhcCc--CCCCCCccccEEEeecCCCCcchHHHHHh
Q 005501 419 FLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (693)
Q Consensus 419 L~~G~~lvi~~~~---~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gGe~l~~~~~~~~~~ 493 (693)
|+.|++++++++. +++..++++|++++||++.++|++++.|.+... ....++++||.++++||+++++..+++.+
T Consensus 340 L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~ 419 (666)
T PLN02654 340 MLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFN 419 (666)
T ss_pred HHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCCHHHHHHHHH
Confidence 9999999999753 467899999999999999999999999987643 23457889999999999999999999988
Q ss_pred hCCC--CceecccccccccceeccCCcC-CCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEEecccCCCccccc
Q 005501 494 KAWY--NAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL 570 (693)
Q Consensus 494 ~~~~--~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v~~gy~~~~~~~~ 570 (693)
.++. +++.+.||+||+++..+...+. .+...+++|+|++|++++|+|++|++++.|+ +|||++..++.+...+|+
T Consensus 420 ~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~g~~~~~~~--~Gel~v~~~~p~~~~gy~ 497 (666)
T PLN02654 420 VVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKEIEGEC--SGYLCVKKSWPGAFRTLY 497 (666)
T ss_pred HhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEECCCCCCCCCCC--ceEEEEcCCCchhhhhhc
Confidence 8753 6899999999998755443331 2445678999999999999999999999887 499999432222222222
Q ss_pred -ccccccccc-cccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecC
Q 005501 571 -NADHEEVYF-RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (693)
Q Consensus 571 -~~~~t~~~f-~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~ 648 (693)
+++.+.+.| ... +| ||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|+++++
T Consensus 498 ~~~~~~~~~~~~~~---~g--~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~-~~p~V~eaaVvg~~d 571 (666)
T PLN02654 498 GDHERYETTYFKPF---AG--YYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALV-SHPQCAEAAVVGIEH 571 (666)
T ss_pred CChHHHHHhhhhcC---CC--EEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHH-hCCCeeeEEEEeeEc
Confidence 333444333 221 23 9999999999999999999999999999999999999999996 999999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCCh---HHHHHHHHHHHHhhcCCCceec
Q 005501 649 AGGGPEVLVIFVVLKKGFTSQP---DKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~---~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
+..| +.+++||+++++...+. ++|+++++++|+.|++|..+++
T Consensus 572 ~~~g-e~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~ 617 (666)
T PLN02654 572 EVKG-QGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHW 617 (666)
T ss_pred CCCC-eEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCCEEEE
Confidence 8888 99999999998765553 3688888999999999998765
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-73 Score=650.46 Aligned_cols=549 Identities=22% Similarity=0.346 Sum_probs=436.1
Q ss_pred CHHHHHHHHhhCHHHHHHHHHhhcccceeccceeeccCCCCCCCCCCcCCCCccchhhhhccCcccCCCCCCcEEEEEec
Q 005501 120 SFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWRE 199 (693)
Q Consensus 120 ~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~ 199 (693)
+|+.+++++++++..||..+++. +.|.+++.++++.. ..+..+||.++.+|.+.++++++. +.+|+++|+++.+
T Consensus 2 ~~~~~~~~s~~~~~~fw~~~~~~--~~~~~~~~~~~~~~--~~~~~~wf~~~~~n~~~~~l~~~~--~~~p~~~Al~~~~ 75 (628)
T TIGR02316 2 RYEEFYQRSIEQPEAFWAEQARR--IDWQTPPQRILDYS--NPPFARWFAGGRTNLCHNALDRHL--DERGEQLALVTVS 75 (628)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHh--CCeecCCcccccCC--CCCcCccCCCCEeeHHHHHHHHHh--CcCCCCeEEEEEc
Confidence 46888999999999999999997 47899999987542 235679999999999999998754 6789999999853
Q ss_pred CCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHh
Q 005501 200 DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRV 278 (693)
Q Consensus 200 ~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~ 278 (693)
. +++..+++||+||.++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++
T Consensus 76 ~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~ 153 (628)
T TIGR02316 76 S--ETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDD 153 (628)
T ss_pred C--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHh
Confidence 2 123345899999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCeeEEEeecceeeCCccccchhhHhh---c---CCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCCCCCCCcc
Q 005501 279 SKAKGIFTQDFILRGGRKFPLYSKVLG---A---APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (693)
Q Consensus 279 ~~~~~il~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (693)
++++++|+++...+.++.++....+.+ . ....+++++...... ........+|.++...... ...+...
T Consensus 154 ~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~ 228 (628)
T TIGR02316 154 ATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM-RLIPGRDVDYAALRTQHED----AQVPVEW 228 (628)
T ss_pred cCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc-CcccCccccHHHHhhcccc----CCCCcee
Confidence 999999998876655555544333322 1 123444444221110 0111123456665543211 1112223
Q ss_pred CCCCCeEEEEeccCCCCCcceEEecchhHH-HHHHHhchhcCCCCCCEEEEeCCccccchh-HHHHHHHHcCCEEEEecC
Q 005501 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSI-RCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQG 430 (693)
Q Consensus 353 ~~~~~~a~il~TSGSTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvi~~~ 430 (693)
..+++++||+|||||||+||||+++|++++ +........++++++|++++.++++|+++. +.++.+|+.|++++++++
T Consensus 229 ~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~ 308 (628)
T TIGR02316 229 LESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEG 308 (628)
T ss_pred cCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCC
Confidence 467999999999999999999999999975 444455566889999999999999999996 678899999999999875
Q ss_pred C---CChhhHHHHHHHcCCcEEeechHHHHHHHhcCc--CCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceecccc
Q 005501 431 S---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (693)
Q Consensus 431 ~---~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (693)
. +++..++++|+++++|++.++|++++.|.+... ....++++||.+++|||++++++.+++...+ +..++|.||
T Consensus 309 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~-~~~~~~~yG 387 (628)
T TIGR02316 309 LPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGL-GKPVIDNYW 387 (628)
T ss_pred CCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHh-CCCEEeccc
Confidence 3 367889999999999999999999999987642 2345689999999999999999999888765 578999999
Q ss_pred cccccceeccCCcC---CCCccCccCCCCCCceEEEECC-CCCCCCCCCCceeeEEEe-c---ccCCCcccccc-ccccc
Q 005501 506 GTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLF-P---LYLGASDRLLN-ADHEE 576 (693)
Q Consensus 506 ~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~ild~-~~~~~p~G~~giGel~v~-~---gy~~~~~~~~~-~~~t~ 576 (693)
+||++..++..... .....+++|+|++|++++|+|+ +|+++|.|+. |||++. | ||+. +|++ ++.+.
T Consensus 388 ~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~--Gel~v~gp~~~g~~~---~~~~~~~~~~ 462 (628)
T TIGR02316 388 QTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEK--GVLTVVPPLPPGCLS---TVWGDDARFL 462 (628)
T ss_pred ccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCc--EEEEEecCCCccccc---cccCChHHHH
Confidence 99998544333221 2234578899999999999998 7999999985 999993 3 3432 2222 22222
Q ss_pred ccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEE
Q 005501 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 656 (693)
Q Consensus 577 ~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l 656 (693)
..|.. ..+++||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| +.+
T Consensus 463 ~~~~~---~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~-~~p~V~ea~Vvg~~d~~~g-~~~ 537 (628)
T TIGR02316 463 KTYWS---HFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVS-SHPSVAEVAVVGVHDELKG-QVA 537 (628)
T ss_pred Hhhhh---cCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHH-hCCCcceEEEEeeecCCCC-eEE
Confidence 22211 113459999999999999999999999999999999999999999996 9999999999999998888 999
Q ss_pred EEEEEecCCCCC--------ChHHHHHHHHHHHHhhcCCCceec
Q 005501 657 VIFVVLKKGFTS--------QPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 657 ~a~vv~~~~~~~--------~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
++||+++++... ..++|+++++++|+.|++|..++.
T Consensus 538 ~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~ 581 (628)
T TIGR02316 538 VVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYF 581 (628)
T ss_pred EEEEEEcCCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEE
Confidence 999998875432 236799999999999999998765
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-73 Score=649.57 Aligned_cols=579 Identities=27% Similarity=0.412 Sum_probs=453.6
Q ss_pred cccCCcccccccchHHHHHHhCCcccccccCCCCCCHHHHHHHHhhCHHHHHHHHHhhcccceeccceeeccCCCCCCCC
Q 005501 85 YWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHG 164 (693)
Q Consensus 85 ~~~~~~~~~~~~dl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 164 (693)
.|.|.++....++|..+....... |+..+.+|+.++++++++...||..+++...+.+.++++.+++.. ..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~--~~~~ 77 (655)
T PRK03584 5 LWTPSAERIAASRMTAFIRWLAAR-----RGLSFDDYAALWRWSVEDLEAFWQSVWDFFGVIGSTPYTVVLAGR--RMPG 77 (655)
T ss_pred CCCCChhhcccchHHHHHHHHHHH-----hCCChHhHHHHHHHHHhCHHHHHHHHHHhcCceecCCCcEeecCC--CCCC
Confidence 677766656677777665443321 333446789999999999999999999887678888888886542 2345
Q ss_pred CCcCCCCccchhhhhccCcccCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCC
Q 005501 165 GTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243 (693)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s 243 (693)
.+||.++.+|++++++++ .+|+++|+++.+. .+..+++||+||.++++++|++|++. +++||+|+|+++|+
T Consensus 78 ~~wf~~~~~n~~~~~~~~-----~~~~~~Al~~~~~---~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~ 149 (655)
T PRK03584 78 ARWFPGARLNYAENLLRH-----RRDDRPAIIFRGE---DGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNI 149 (655)
T ss_pred CeeCCCCEeeHHHHhhcc-----CCCCCeEEEEECC---CCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC
Confidence 799999999999999863 4699999998754 13456899999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHh---hcCCC--ceEEEcCCC
Q 005501 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL---GAAPL--KAIVLPAIG 318 (693)
Q Consensus 244 ~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~ 318 (693)
+++++++|||+++|++++|++|.++.+++.+++++++++++|+++......+..+....+. ...+. .+++++...
T Consensus 150 ~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 229 (655)
T PRK03584 150 PETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLG 229 (655)
T ss_pred HHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCC
Confidence 9999999999999999999999999999999999999999999987665555544443332 22222 344443222
Q ss_pred CCCCCCCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHH-HHHHHhchhcCCCCC
Q 005501 319 NDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-RCTAEGWAHIDLKVG 397 (693)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~~ 397 (693)
.............|+++...... .........+++++||+|||||||+||||+++|++++ +.+......++++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~ 305 (655)
T PRK03584 230 PAAAAAALPGALLWEDFLAPAEA----AELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPG 305 (655)
T ss_pred CcccccccCCcccHHHHhhcccc----CCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCC
Confidence 11111112234567777652211 1122234567999999999999999999999999875 455566667889999
Q ss_pred CEEEEeCCccccchhHHHHHHHHcCCEEEEecCC---CChhhHHHHHHHcCCcEEeechHHHHHHHhcCc--CCCCCCcc
Q 005501 398 DVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTK 472 (693)
Q Consensus 398 d~~l~~~~~~~~~~~~~~~~~L~~G~~lvi~~~~---~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~ 472 (693)
|+++++++++|+++. .++.+|+.|++++++++. +++..++++++++++|++.++|++++.+.+... ....++++
T Consensus 306 d~~~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~s 384 (655)
T PRK03584 306 DRFFWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSA 384 (655)
T ss_pred CEEEEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhh
Confidence 999999999998654 366899999999998753 467899999999999999999999999986532 23457889
Q ss_pred ccEEEeecCCCCcchHHHHHhhCC-CCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCC
Q 005501 473 IRSFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQP 551 (693)
Q Consensus 473 lr~v~~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~ 551 (693)
||.+++|||++++++.+++.+.++ +..+.+.||+||++..+....+..+...+++|.|++|++++|+|++|+++ .|+
T Consensus 385 Lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd~~g~~~-~g~- 462 (655)
T PRK03584 385 LRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDEDGRPV-VGE- 462 (655)
T ss_pred eEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEECCCCCCC-CCC-
Confidence 999999999999999999988773 67899999999987654443333445567899999999999999999999 677
Q ss_pred ceeeEEEecccCCCccccccc-ccc---cccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHH
Q 005501 552 CVGEVGLFPLYLGASDRLLNA-DHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627 (693)
Q Consensus 552 giGel~v~~gy~~~~~~~~~~-~~t---~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eI 627 (693)
+|||+|...+.+...+|++. +.+ ..+|... +| ||+|||+|++|+||+++|+||+||+||++|+||+|.||
T Consensus 463 -~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~---~g--~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EI 536 (655)
T PRK03584 463 -VGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTF---PG--VWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEI 536 (655)
T ss_pred -ceEEEEccCCCCCcceeeCCCccchHHHhhhccC---CC--EeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHH
Confidence 49999942111112222222 221 2233221 23 89999999999999999999999999999999999999
Q ss_pred HHHHhccCcccceeEEEeecCCCCCceEEEEEEEecCCCCCCh---HHHHHHHHHHHHhhcCCCceecC
Q 005501 628 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP---DKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 628 E~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~---~~l~~~l~~~L~~~m~P~~~v~~ 693 (693)
|++|. +||+|.+|+|++++++..+ +.+++||+++++...+. ++|+++++++|+.|++|.+++.+
T Consensus 537 E~~l~-~~p~V~ea~vvg~~~~~~g-~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v 603 (655)
T PRK03584 537 YRQVE-ALPEVLDSLVIGQEWPDGD-VRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAV 603 (655)
T ss_pred HHHHH-hCCCcceEEEEeeEcCCCC-EEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCCCEEEEC
Confidence 99996 9999999999999998777 99999999988755553 57999999999999999988753
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-73 Score=648.39 Aligned_cols=554 Identities=25% Similarity=0.397 Sum_probs=442.2
Q ss_pred CCCHHHHHHHHhhCHHHHHHHHHhhcccceeccceeeccCCCCCCCCCCcCCCCccchhhhhccCcccCCCCCCcEEEEE
Q 005501 118 ITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVW 197 (693)
Q Consensus 118 ~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~ 197 (693)
+.+|+.+++++++++..||..+.+. ...+.+++.++++.. .....+||.++.+|.+++++++++ +.+|+++|+++
T Consensus 4 ~~~y~~~~~~s~~~~~~fw~~~~~~-~~~~~~~~~~~~~~~--~~~~~~wf~~~~~n~~~~~l~~~~--~~~p~~~Al~~ 78 (625)
T TIGR02188 4 LEQYKELYEESIEDPDKFWAKLARE-LLDWFKPFTKVLDWS--FPPFYKWFVGGELNVSYNCVDRHL--EARPDKVAIIW 78 (625)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHh-cCceecCCceeecCC--CCCCCeeCCCCEEEHHHHHHHHhh--ccCCCCeEEEE
Confidence 3467899999999999999999987 457899999887653 234689999999999999998754 67999999998
Q ss_pred ecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHH
Q 005501 198 REDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRL 276 (693)
Q Consensus 198 ~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l 276 (693)
.++ +.+..+++||+||.++++++|++|+++ +++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++
T Consensus 79 ~~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l 156 (625)
T TIGR02188 79 EGD--EPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRI 156 (625)
T ss_pred EcC--CCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHH
Confidence 654 223456899999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhcCeeEEEeecceeeCCccccchhhHhh---cCC---CceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCCCCCCC
Q 005501 277 RVSKAKGIFTQDFILRGGRKFPLYSKVLG---AAP---LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 350 (693)
Q Consensus 277 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (693)
++++++++|+++...+.++..+....+.+ ..+ ..++++........ ........|+++...... ....
T Consensus 157 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~ 230 (625)
T TIGR02188 157 NDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVP-WVEGRDVWWHDLMAKASA-----YCEP 230 (625)
T ss_pred HhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcC-ccccccccHHHHHhhcCC-----CCCc
Confidence 99999999999877666655544333322 222 12333332221110 011123456666543221 1223
Q ss_pred ccCCCCCeEEEEeccCCCCCcceEEecchhHHHHH-HHhchhcCCCCCCEEEEeCCccccchh-HHHHHHHHcCCEEEEe
Q 005501 351 VYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT-AEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALY 428 (693)
Q Consensus 351 ~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvi~ 428 (693)
....+++++||+|||||||+||||+++|++++... ......++++++|++++.++++|.++. +.++.+|+.|++++++
T Consensus 231 ~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~ 310 (625)
T TIGR02188 231 EPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMF 310 (625)
T ss_pred eecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEE
Confidence 34567999999999999999999999999975433 334456788999999999999999886 6688999999999998
Q ss_pred cCC---CChhhHHHHHHHcCCcEEeechHHHHHHHhcCcC--CCCCCccccEEEeecCCCCcchHHHHHhhCC--CCcee
Q 005501 429 QGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAII 501 (693)
Q Consensus 429 ~~~---~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~--~~~l~ 501 (693)
++. +++..+++.|+++++|++.++|++++.|.+.... ...++++||.+++|||++++++.+++.+.++ +++++
T Consensus 311 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~ 390 (625)
T TIGR02188 311 EGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIV 390 (625)
T ss_pred CCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceE
Confidence 753 3678999999999999999999999999876432 3356889999999999999999999988765 37899
Q ss_pred cccccccccceeccCCcC-CCCccCccCCCCCCceEEEECCCCCCCC-CCCCceeeEEEecccCCCcccccc-ccccccc
Q 005501 502 ESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYP-DDQPCVGEVGLFPLYLGASDRLLN-ADHEEVY 578 (693)
Q Consensus 502 n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~ild~~~~~~p-~G~~giGel~v~~gy~~~~~~~~~-~~~t~~~ 578 (693)
|.||+||+++.++...+. .+...+++|+|++|++++|+|++|++++ .|+ .|||++...+.+...+|++ ++.+.+.
T Consensus 391 ~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~g~~~~~~g~--~GeL~v~~p~p~~~~gy~~~~~~~~~~ 468 (625)
T TIGR02188 391 DTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGE--GGYLVIKQPWPGMLRTIYGDHERFVDT 468 (625)
T ss_pred ecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEECCCCCCCCCCCC--eEEEEEccCCCcccccccCChHHHHHH
Confidence 999999998765443322 2345678999999999999999999999 888 4999984322222222333 3333333
Q ss_pred ccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEE
Q 005501 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658 (693)
Q Consensus 579 f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a 658 (693)
|.. ..+| ||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| +.++|
T Consensus 469 ~~~--~~~g--~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~-~~p~V~e~~vvg~~~~~~g-~~~~a 542 (625)
T TIGR02188 469 YFS--PFPG--YYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALV-SHPAVAEAAVVGIPDDIKG-QAIYA 542 (625)
T ss_pred Hhc--cCCC--EEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHH-hCCCcceEEEEeeEcCCCC-eEEEE
Confidence 321 1123 9999999999999999999999999999999999999999996 9999999999999998887 99999
Q ss_pred EEEecCCCCCC---hHHHHHHHHHHHHhhcCCCceec
Q 005501 659 FVVLKKGFTSQ---PDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 659 ~vv~~~~~~~~---~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
||+++++...+ .++|+++++++|+.+++|..++.
T Consensus 543 ~vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~ 579 (625)
T TIGR02188 543 FVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRF 579 (625)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHhhcCCCccCcEEEE
Confidence 99998876544 26799999999999999998765
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-72 Score=644.74 Aligned_cols=579 Identities=26% Similarity=0.374 Sum_probs=452.2
Q ss_pred ccccCCcccccccchHHHHHHhCCcccccccCCCCCCHHHHHHHHhhCHHHHHHHHHhhcccceeccceeeccCCCCCCC
Q 005501 84 LYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKH 163 (693)
Q Consensus 84 ~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 163 (693)
..|.|.......++|..+.+..+.. |...+.+|+.+++++++++..||..+++...+.+.++++++++... ..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~--~~ 77 (652)
T TIGR01217 5 PLWQPDAQRIAQARMTRFQAWAGEH-----HGAAEGGYDALHRWSVDELDTFWKAVWEWFDVRFSTPCARVVDDRT--MP 77 (652)
T ss_pred CCCCCChhhcccchHHHHHHHHHHh-----hCCChhhHHHHHHHHHhCHHHHHHHHHHhCCcceeCCCceeeeCCC--CC
Confidence 4787776666677777665554322 3444567899999999999999999999987899999999986522 34
Q ss_pred CCCcCCCCccchhhhhccCcccCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC
Q 005501 164 GGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPM 242 (693)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~ 242 (693)
...||.++.+|.++++++. .++++|+++.+.. +..+++||+||.++++++|+.|+++ +++||+|+++++|
T Consensus 78 ~~~wf~~~~~n~~~~~~~~------~~~~~a~~~~~~~---~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n 148 (652)
T TIGR01217 78 GAQWFPGARLNYAENLLRA------AGTEPALLYVDET---HEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPN 148 (652)
T ss_pred CCEECCCCeeeHHHHHhcc------CCCCeEEEEECCC---CCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC
Confidence 5789999999999999862 3689999987542 3456899999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhh---cCC--CceEEEcCC
Q 005501 243 TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG---AAP--LKAIVLPAI 317 (693)
Q Consensus 243 s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~ 317 (693)
++++++++|||+++|++++|++|.++.+++.+++++++|+++|+++.+.++++..+....+.+ ..+ ..+++++..
T Consensus 149 ~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~ 228 (652)
T TIGR01217 149 IPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYL 228 (652)
T ss_pred CHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCC
Confidence 999999999999999999999999999999999999999999999887766666555444332 222 224444322
Q ss_pred CCC-CCCCCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHH-HHHHHhchhcCCC
Q 005501 318 GND-VGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-RCTAEGWAHIDLK 395 (693)
Q Consensus 318 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~-~~~~~~~~~~~~~ 395 (693)
... .......+...|+++...... .........++++++|+|||||||+||||+++|++++ +........++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~ 304 (652)
T TIGR01217 229 GPRETEAPKIDGALDLEDFTAAAQA----AELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLG 304 (652)
T ss_pred CCcccccccccCcccHHHHHhcccC----CCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCC
Confidence 110 000001134567777543211 1111233456899999999999999999999999864 4455555668899
Q ss_pred CCCEEEEeCCccccchhHHHHHHHHcCCEEEEecCC---CChhhHHHHHHHcCCcEEeechHHHHHHHhcCc--CCCCCC
Q 005501 396 VGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDW 470 (693)
Q Consensus 396 ~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvi~~~~---~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l 470 (693)
++|+++++++++|+++.+ ++.+|+.|++++++++. +++..++++++++++|++.++|++++.+..... ....++
T Consensus 305 ~~d~~~~~~~~~~~~~~~-~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l 383 (652)
T TIGR01217 305 PGDRLFYYTTTGWMMWNW-LVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDL 383 (652)
T ss_pred CCcEEEEeCCcchhhhHH-HHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCCh
Confidence 999999999999987544 55899999999999753 367789999999999999999998888765422 234678
Q ss_pred ccccEEEeecCCCCcchHHHHHhhCC-CCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCC
Q 005501 471 TKIRSFASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDD 549 (693)
Q Consensus 471 ~~lr~v~~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G 549 (693)
++||.+++|||++++++.+++.+.++ +..+.+.||+||+++++....+..+...+++|.|.+|++++|+|++|++++ |
T Consensus 384 ~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd~~g~~~~-g 462 (652)
T TIGR01217 384 SALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWDPEGKPVT-G 462 (652)
T ss_pred hheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCceEEECCCCCCCC-C
Confidence 99999999999999999999887764 356789999999865444333334445678999999999999999999995 7
Q ss_pred CCceeeEEEecccCCCccccccc-ccc---cccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehH
Q 005501 550 QPCVGEVGLFPLYLGASDRLLNA-DHE---EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV 625 (693)
Q Consensus 550 ~~giGel~v~~gy~~~~~~~~~~-~~t---~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~ 625 (693)
+ .|||++...+.+.+.+|++. +.+ +.+|.. ..+||+|||+|++|+||+|+|+||+||+||++|+||+|.
T Consensus 463 ~--~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~-----~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~ 535 (652)
T TIGR01217 463 E--VGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDT-----YPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSA 535 (652)
T ss_pred C--ccEEEEecCCCccccceeCCCccchhHHhhhcC-----CCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHH
Confidence 7 49999942221222223332 222 133332 123899999999999999999999999999999999999
Q ss_pred HHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecCCCCCCh---HHHHHHHHHHHHhhcCCCceecC
Q 005501 626 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP---DKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 626 eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~---~~l~~~l~~~L~~~m~P~~~v~~ 693 (693)
|||++|. +||+|.+|+|++++++.+| +.++|||+++++...+. ++|+++|+++|+.|++|..++++
T Consensus 536 EIE~~l~-~~p~V~eaavvg~~~~~~g-e~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v 604 (652)
T TIGR01217 536 EIYNAVE-RLDEVRESLCIGQEQPDGG-YRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEV 604 (652)
T ss_pred HHHHHHH-hCCCcceEEEEeeecCCCC-EEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCCcCCCEEEEC
Confidence 9999996 9999999999999998887 99999999998765553 47999999999999999987753
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-72 Score=640.65 Aligned_cols=552 Identities=26% Similarity=0.380 Sum_probs=435.1
Q ss_pred CCHHHHHHHHhhCHHHHHHHHHhhcccceeccceeeccCCCCCCCCCCcCCCCccchhhhhccCcccCCCCCCcEEEEEe
Q 005501 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (693)
Q Consensus 119 ~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~ 198 (693)
.+|..+.+++++++..||..+.+. ..+.+++.++++. .....+|+.++.+|.++++++++. +++|+++|+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~~~---~~~~~~w~~~~~~n~~~~~l~~~~--~~~p~~~Al~~~ 89 (637)
T PRK00174 17 EQYKALYQESVEDPEGFWAEQAKR--LDWFKPFDTVLDW---NAPFIKWFEDGELNVSYNCLDRHL--KTRGDKVAIIWE 89 (637)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHh--cCeecCCcccccC---CCCCCccCCCCEeEHHHHHHHHhh--ccCCCCeEEEEE
Confidence 456888899999999999999877 4677888887654 345689999999999999998754 678999999986
Q ss_pred cCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHH
Q 005501 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (693)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~ 277 (693)
+. +.+..+++||+||.++++++|++|+++ +++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++
T Consensus 90 ~~--~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~ 167 (637)
T PRK00174 90 GD--DPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRII 167 (637)
T ss_pred CC--CCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHH
Confidence 53 112346899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCeeEEEeecceeeCCccccchhhHhh---cCC--CceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCCCCCCCcc
Q 005501 278 VSKAKGIFTQDFILRGGRKFPLYSKVLG---AAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (693)
Q Consensus 278 ~~~~~~il~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (693)
+++++++|+++......+..+....+.+ ..+ ..++++........ ........|+++...... ......
T Consensus 168 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~ 241 (637)
T PRK00174 168 DAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVD-WVEGRDLWWHELVAGASD-----ECEPEP 241 (637)
T ss_pred hcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcC-cCCCCcccHHHHHhhcCC-----CCCccc
Confidence 9999999998876544444433333222 122 12333332211110 011123456666543221 122234
Q ss_pred CCCCCeEEEEeccCCCCCcceEEecchhHHHHH-HHhchhcCCCCCCEEEEeCCccccchh-HHHHHHHHcCCEEEEecC
Q 005501 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT-AEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQG 430 (693)
Q Consensus 353 ~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvi~~~ 430 (693)
..+++++||+|||||||+||||+++|++++... ......++++++|++++.++++|..+. +.++.+|++|++++++++
T Consensus 242 ~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~ 321 (637)
T PRK00174 242 MDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEG 321 (637)
T ss_pred cCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECC
Confidence 567899999999999999999999999976543 334455788999999999999999887 578899999999999874
Q ss_pred C---CChhhHHHHHHHcCCcEEeechHHHHHHHhcCcC--CCCCCccccEEEeecCCCCcchHHHHHhhCC--CCceecc
Q 005501 431 S---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAIIES 503 (693)
Q Consensus 431 ~---~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~--~~~l~n~ 503 (693)
. +++..+++.|+++++|++.++|++++.|++.... ...++++||.+++|||++++++.+++.+.++ .++++|.
T Consensus 322 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~ 401 (637)
T PRK00174 322 VPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDT 401 (637)
T ss_pred CCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEec
Confidence 3 3678999999999999999999999999876432 2356789999999999999999998887764 3789999
Q ss_pred cccccccceeccCCcC-CCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEEecccCCCccccc-ccccccccccc
Q 005501 504 CGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL-NADHEEVYFRG 581 (693)
Q Consensus 504 YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v~~gy~~~~~~~~-~~~~t~~~f~~ 581 (693)
||+||++...+...+. .....+++|+|++|++++|+|++|+++|.|+. |||++...+.+...+|+ +++.+.+.|
T Consensus 402 YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d~~g~~~~~g~~--Gel~v~g~~p~~~~gy~~~~~~~~~~~-- 477 (637)
T PRK00174 402 WWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEG--GNLVIKDPWPGMMRTIYGDHERFVKTY-- 477 (637)
T ss_pred ccccccCCceEecCCCCCCcCCCcccCCCCCceEEEECCCCCCCCCCCc--EEEEEcCCCCcccccccCCHHHHHHhh--
Confidence 9999998755433221 22345789999999999999999999999985 99998421111111222 233333222
Q ss_pred cccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEE
Q 005501 582 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV 661 (693)
Q Consensus 582 ~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv 661 (693)
+....+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| +.++|||+
T Consensus 478 --~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~~~V~~~~Vvg~~~~~~g-~~~~a~vv 553 (637)
T PRK00174 478 --FSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKVAEAAVVGRPDDIKG-QGIYAFVT 553 (637)
T ss_pred --hcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHH-hCCCcceEEEEeeEcCCCC-eEEEEEEE
Confidence 1112349999999999999999999999999999999999999999996 9999999999999998887 99999999
Q ss_pred ecCCCCCC---hHHHHHHHHHHHHhhcCCCceecC
Q 005501 662 LKKGFTSQ---PDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 662 ~~~~~~~~---~~~l~~~l~~~L~~~m~P~~~v~~ 693 (693)
+.++...+ .++|+++|+++|+.|+.|..++.+
T Consensus 554 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v 588 (637)
T PRK00174 554 LKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFA 588 (637)
T ss_pred ECCCCCCCHHHHHHHHHHHHhhcCCccCCCEEEEc
Confidence 98875544 468999999999999999988754
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-71 Score=635.78 Aligned_cols=549 Identities=20% Similarity=0.317 Sum_probs=434.3
Q ss_pred CCHHHHHHHHhhCHHHHHHHHHhhcccceeccceeeccCCCCCCCCCCcCCCCccchhhhhccCcccCCCCCCcEEEEEe
Q 005501 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWR 198 (693)
Q Consensus 119 ~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~ 198 (693)
.+|+.+++++++++..||..+.+. ..|.++++++++.. ..+..+||.++.+|.+.++++++. +.+|+++|+++.
T Consensus 2 ~~~~~~~~~s~~~~~~fw~~~~~~--~~~~~~~~~~~~~~--~~~~~~wf~~~~~n~~~~~l~~~~--~~~p~~~A~~~~ 75 (629)
T PRK10524 2 MSYSEFYQRSIDDPEAFWAEQARR--IDWQTPFTQVLDYS--NPPFARWFVGGRTNLCHNAVDRHL--AKRPEQLALIAV 75 (629)
T ss_pred hhHHHHHHHHhcCHHHHHHHHHHh--CCcccCchhhccCC--CCCcCccCCCcEeeHHHHHHHHhh--ccCCCCeEEEEE
Confidence 468999999999999999999996 47899999987542 234578999999999999998754 678999999985
Q ss_pred cCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHH
Q 005501 199 EDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLR 277 (693)
Q Consensus 199 ~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~ 277 (693)
+. +++..+++||+||.++++++|++|+++ +++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++
T Consensus 76 ~~--~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~ 153 (629)
T PRK10524 76 ST--ETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARID 153 (629)
T ss_pred cC--CCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHH
Confidence 42 122346899999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCeeEEEeecceeeCCccccchhhHh---hc---CCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCCCCCCCc
Q 005501 278 VSKAKGIFTQDFILRGGRKFPLYSKVL---GA---APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351 (693)
Q Consensus 278 ~~~~~~il~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (693)
+++++++|+++...+.++..+....+. +. ....++++....... .........|.++...... ...+..
T Consensus 154 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~ 228 (629)
T PRK10524 154 DAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM-ARVAGRDVDYATLRAQHLG----ARVPVE 228 (629)
T ss_pred hcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc-CcccCCcccHHHHHhcCCC----CCCCce
Confidence 999999999887665555544333322 21 122344443211110 0111223456665443221 111122
Q ss_pred cCCCCCeEEEEeccCCCCCcceEEecchhHHH-HHHHhchhcCCCCCCEEEEeCCccccchh-HHHHHHHHcCCEEEEec
Q 005501 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR-CTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQ 429 (693)
Q Consensus 352 ~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvi~~ 429 (693)
...+++++||+|||||||+||||+++|++++. ........++++++|++++.++++|+++. +.++.+|+.|+++++++
T Consensus 229 ~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~ 308 (629)
T PRK10524 229 WLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYE 308 (629)
T ss_pred eeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEEC
Confidence 34578999999999999999999999999754 33334456788999999999999999886 67889999999999987
Q ss_pred CC---CChhhHHHHHHHcCCcEEeechHHHHHHHhcCc--CCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceeccc
Q 005501 430 GS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (693)
Q Consensus 430 ~~---~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (693)
+. +++..++++|+++++|++.++|++++.|.+... ....++++||.+++|||++++++.+++.+.+ +++++|.|
T Consensus 309 g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~-~~~v~~~Y 387 (629)
T PRK10524 309 GLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEAL-GVPVIDNY 387 (629)
T ss_pred CCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHHHHhc-CCCeEecc
Confidence 53 367889999999999999999999999887542 2345688999999999999999999988776 57899999
Q ss_pred ccccccceeccCCc---CCCCccCccCCCCCCceEEEECC-CCCCCCCCCCceeeEEEe-c---ccCCCccccc-ccccc
Q 005501 505 GGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLF-P---LYLGASDRLL-NADHE 575 (693)
Q Consensus 505 G~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~ild~-~~~~~p~G~~giGel~v~-~---gy~~~~~~~~-~~~~t 575 (693)
|+||++..++.... ......+++|+|++|++++|+|+ +|+++|.|+. |||++. + +|+.+ |+ +++.+
T Consensus 388 G~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~--Gel~i~gp~~~~~~~~---~~~~~~~~ 462 (629)
T PRK10524 388 WQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEK--GVLVIEGPLPPGCMQT---VWGDDDRF 462 (629)
T ss_pred ccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCc--EEEEEcCCCChhhcCC---ccCChHHH
Confidence 99999843332222 12334578999999999999998 9999999985 999993 2 34332 22 22222
Q ss_pred c-ccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCce
Q 005501 576 E-VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (693)
Q Consensus 576 ~-~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~ 654 (693)
. .+|... +.+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| +
T Consensus 463 ~~~~~~~~----~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~-~~p~V~e~~vvg~~d~~~g-~ 536 (629)
T PRK10524 463 VKTYWSLF----GRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESIS-SHPAVAEVAVVGVKDALKG-Q 536 (629)
T ss_pred HHhhhccC----CCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHH-hCCCcceEEEEccccCCCC-e
Confidence 2 222211 3459999999999999999999999999999999999999999996 9999999999999998877 9
Q ss_pred EEEEEEEecCCCCCC--------hHHHHHHHHHHHHhhcCCCceec
Q 005501 655 VLVIFVVLKKGFTSQ--------PDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 655 ~l~a~vv~~~~~~~~--------~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
.+++||+++++...+ .++|+++++++|+.|+.|..++.
T Consensus 537 ~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~ 582 (629)
T PRK10524 537 VAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWF 582 (629)
T ss_pred EEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEE
Confidence 999999998754332 35789999999999999988865
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-70 Score=591.27 Aligned_cols=472 Identities=26% Similarity=0.284 Sum_probs=400.1
Q ss_pred CCCCc-EEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh---cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 188 KEDNT-VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM---FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 188 ~~pd~-~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~---v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
..+++ +++++.... .+.+||+|+.+++.|+|.+|.++ +++||+|++++||+++++.++|||+.+|+++.|+
T Consensus 28 ~~~~~~~~~i~~~~~-----g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~ 102 (537)
T KOG1176|consen 28 VYLDRNTSLVYQDSD-----GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPL 102 (537)
T ss_pred ccccCcceEEEecCC-----CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcccccc
Confidence 33444 777777630 12999999999999999999975 7889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCccc-HHHHhcccCCC
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLS-WKDFLSSVDYH 342 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 342 (693)
+|.+.+.++...+++++++++|++.... +...........+++++................+ +.++......
T Consensus 103 Np~~~~~ei~~~~~~s~~kiif~d~~~~------~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 175 (537)
T KOG1176|consen 103 NPRLTASEIAKQLKDSKPKLIFVDEDFY------DKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLP- 175 (537)
T ss_pred CcccCHHHHHHHHHhcCCeEEEEcCchH------HHHHHHHhhcCCceEEEecccCccccccccccccchhhccccCCC-
Confidence 9999999999999999999999998643 3333333333455555544311111111111112 3333322221
Q ss_pred CCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHcC
Q 005501 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (693)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G 422 (693)
. . ......+|++.|+|||||||.||||++||+++............+...|+.++..|++|..|++.++.+++.|
T Consensus 176 ---~-~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~ 250 (537)
T KOG1176|consen 176 ---D-G-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAG 250 (537)
T ss_pred ---c-c-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhC
Confidence 1 1 3456679999999999999999999999999988877666677778899999999999999999988888888
Q ss_pred CEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceec
Q 005501 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (693)
Q Consensus 423 ~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (693)
++.++....++++.+++.|++|+||++.++|.++..|++.......+++++|.+.+||.++++++.+.++++++...+.+
T Consensus 251 ~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q 330 (537)
T KOG1176|consen 251 GTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQ 330 (537)
T ss_pred CceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEE
Confidence 88777777789999999999999999999999999999987667788999999999999999999999999998789999
Q ss_pred ccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccccccc
Q 005501 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (693)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~ 577 (693)
+||+||+++..+.+........+++|+++++++..|.++.|+.+++++. ||||+ ..||++ |++.|++
T Consensus 331 ~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~e~g~~l~~~~~--GEI~vrg~~imkGY~~------NpeaT~~ 402 (537)
T KOG1176|consen 331 GYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLDETGVSLGPNQT--GEICVRGPQVMKGYLK------NPEATKE 402 (537)
T ss_pred eeccccccCceeecCCCccCcccccCccccceEEEeeCCCCCCCCCCCc--eEEEEECcccchhhcC------ChHHHHh
Confidence 9999999976655544333578899999999999999999999999995 99998 578888 7778998
Q ss_pred cccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEE
Q 005501 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (693)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 657 (693)
.|..+ .||+|||+|++|+||+|++.+|++|+||.+|+.|+|.|||++|. .||.|.||||++++|+..| +.++
T Consensus 403 ~~~~~------GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~-~hP~V~eaaVvgipDe~~G-e~p~ 474 (537)
T KOG1176|consen 403 AFDDD------GWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLL-THPDVLEAAVVGIPDEVWG-ETPA 474 (537)
T ss_pred hcccC------CccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHH-hCCCccEEEEEcccccccC-Ccce
Confidence 88753 39999999999999999999999999999999999999999996 9999999999999999999 9999
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
||||.++|..++++++.++++++|+.|+.|..+++
T Consensus 475 A~VV~k~g~~lte~di~~~v~k~l~~y~~~~~V~F 509 (537)
T KOG1176|consen 475 AFVVLKKGSTLTEKDIIEYVRKKLPAYKLPGGVVF 509 (537)
T ss_pred EEEEecCCCcCCHHHHHHHHHhhCChhhccCeEEE
Confidence 99999999899999999999999999999987765
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-69 Score=579.28 Aligned_cols=560 Identities=31% Similarity=0.451 Sum_probs=464.2
Q ss_pred cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcccceeccceeeccCCCCCCCCCCcCCCCccchhhhhccCcccCCCCCCcE
Q 005501 114 YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTV 193 (693)
Q Consensus 114 y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~ 193 (693)
|...+.+|..|++.++++.+.||...++.+....... .............+|+.+..+|.+++|++++.... .++.+
T Consensus 6 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~w~~g~~ln~~~n~~~~~~~~~-~~~~~ 82 (626)
T KOG1175|consen 6 YKNSLSSYREFYRFSVEDPERFWGEVAKELHWKFPWP--RCNKDENKGNPFTKWFPGAFLNACYNCLDRHIKEK-GGDKV 82 (626)
T ss_pred cCCCHHHHHHHHhhcccCHHHHHHHhhhhhhcccCcc--ccccccccCCCCccccccchhhhhHhhhhhhhhhc-CCCCc
Confidence 5667778999999999999999999999874332222 22222334567789999999999999999976455 79999
Q ss_pred EEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHH
Q 005501 194 AIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (693)
Q Consensus 194 Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l 272 (693)
|+++.+.. ++....+||.||.+++.++|..|.+. +++||+|++++|+.+++++++|||.++|++.+++-..+++..+
T Consensus 83 a~~~~~~~--~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l 160 (626)
T KOG1175|consen 83 AIIFEGNE--GGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKEL 160 (626)
T ss_pred EEEEEecC--CCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHH
Confidence 99998653 23333499999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCCCCCCCcc
Q 005501 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (693)
Q Consensus 273 ~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (693)
...++++++++|++.+...+..+.+.....+.+................-......+..|+++...... ..++..
T Consensus 161 ~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~-----~~~~~~ 235 (626)
T KOG1175|consen 161 LDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFWSLELKKASP-----EHPCVP 235 (626)
T ss_pred HHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccHHHHhhhcCC-----CCCcee
Confidence 999999999999999999999988887776666543322111110000001111235677777665543 223667
Q ss_pred CCCCCeEEEEeccCCCCCcceEEecchh-HHHHHHHhchhcCCCCCCEEEEeCCccccchhH-HHHHHHHcCCEEEEecC
Q 005501 353 NPVDAVVNILFSSGTTGEPKAIPWTQLS-SIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQG 430 (693)
Q Consensus 353 ~~~~~~a~il~TSGSTG~PKgV~~sh~~-l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~L~~G~~lvi~~~ 430 (693)
.+.+|+.+|+|||||||.|||+.+++.+ ++..+.....+++++++|++.+++.++|+++.+ ..+++|++|++++++++
T Consensus 236 ~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g 315 (626)
T KOG1175|consen 236 VKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVLYEG 315 (626)
T ss_pred cCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEEEcC
Confidence 7889999999999999999999999987 466666777789999999999999999999985 47789999999999987
Q ss_pred CC-ChhhHHHHHHHcCCcEEeechHHHHHHHhcCcC--CCCCCccccEEEeecCCCCcchHHHHHhhCCCCceecccccc
Q 005501 431 SP-LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507 (693)
Q Consensus 431 ~~-~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 507 (693)
.+ ++..+++.+.+++||++++.|+.++.|.+.... ..++.++||.+.++||++.++..+|+.+.+...+|++.||+|
T Consensus 316 ~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qt 395 (626)
T KOG1175|consen 316 PPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQT 395 (626)
T ss_pred CCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeee
Confidence 76 889999999999999999999999988876543 334447799999999999999999999887544799999999
Q ss_pred cccceeccCCcCC-CCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEEecccC-CCccccccc-c-cccccccccc
Q 005501 508 ELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYL-GASDRLLNA-D-HEEVYFRGMP 583 (693)
Q Consensus 508 E~~~~~~~~~~~~-~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v~~gy~-~~~~~~~~~-~-~t~~~f~~~p 583 (693)
|+|+.++.+.... +..+++.|+|.+|+.+.|+|++|++++.+. |.|+|++.+... +.+..++++ + ....||.+.|
T Consensus 396 EtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~~~~~~~-~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~p 474 (626)
T KOG1175|consen 396 ETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGNELPPST-GNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFP 474 (626)
T ss_pred ccCceeeeccCCCCCcCccccCCCCCCcceEEECCCCCCcCCCC-ceeEEEEeCCCCccccccccCCHHHhhhhhcccCC
Confidence 9999888877766 888999999999999999999999999875 579999955444 433344333 2 3344555433
Q ss_pred cCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEec
Q 005501 584 MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK 663 (693)
Q Consensus 584 ~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~ 663 (693)
| +|+|||.+++|+||+++++||.||+|+++|+||++.|||++|. .||.|.|++||+.+++..| +.++|||+++
T Consensus 475 ---g--~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~-~hp~VaEsAvVg~p~~~~g-e~v~aFvvl~ 547 (626)
T KOG1175|consen 475 ---G--YYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALV-EHPAVAESAVVGSPDPIKG-EVVLAFVVLK 547 (626)
T ss_pred ---c--eEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHh-hCcchhheeeecCCCCCCC-eEEEEEEEEc
Confidence 3 9999999999999999999999999999999999999999996 9999999999999999988 9999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 664 KGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 664 ~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
++. .+.++|++.|+.+++..+.|.+.+.
T Consensus 548 ~g~-~~~~~L~kel~~~VR~~igp~a~P~ 575 (626)
T KOG1175|consen 548 SGS-HDPEQLTKELVKHVRSVIGPYAVPR 575 (626)
T ss_pred CCC-CChHHHHHHHHHHHHhhcCcccccc
Confidence 984 4558999999999999998888763
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=527.93 Aligned_cols=481 Identities=19% Similarity=0.222 Sum_probs=399.8
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
+++.||+.|+++...+ .++||+|+.+.++++|+.|..+ +++||||+|..||+.+|+..+|||.++|.+.+++|
T Consensus 60 t~~v~dkea~Vf~~eg------~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~N 133 (596)
T KOG1177|consen 60 TERVPDKEAAVFDHEG------IRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLN 133 (596)
T ss_pred hhccCcceEEEEeecc------chhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHhceEEeccC
Confidence 3678999999987663 3799999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCC---ccccchhhHhhc---------CCCceEEEcCCCCCCCCCCCCCcccH
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGG---RKFPLYSKVLGA---------APLKAIVLPAIGNDVGIPLREQDLSW 332 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (693)
|.|+.+++++.|+..+++++|+...+.... -..+...++... ++....++-..++ ..-.+...+
T Consensus 134 P~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed----~~~~Ga~~~ 209 (596)
T KOG1177|consen 134 PAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADED----HPLPGAFLL 209 (596)
T ss_pred cccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCC----CcCCCceeh
Confidence 999999999999999999999987542110 000111111111 1222222221111 112356677
Q ss_pred HHHhcccCCCCCC-CCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccch
Q 005501 333 KDFLSSVDYHPRP-NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 411 (693)
Q Consensus 333 ~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 411 (693)
+|++......... ...-.....|||++.|.|||||||.|||+.+||-+++|+......++++...++++...|+.|.++
T Consensus 210 sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~g~~e~~~i~~~~Pl~H~~G 289 (596)
T KOG1177|consen 210 SEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARAGYNEKHRICIPNPLYHCFG 289 (596)
T ss_pred HHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHhCcCcceEEEecCchHHHHH
Confidence 8877665431111 011123456899999999999999999999999999999999999999999999999999999999
Q ss_pred h-HHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHH
Q 005501 412 P-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLW 490 (693)
Q Consensus 412 ~-~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~ 490 (693)
. ..++.+|+.|+|+|+++..+++.+.++.|.++++|.++.+|+++..|++.......+++++|..+.||+++|+++.+.
T Consensus 290 ~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa~~s~eLlk~ 369 (596)
T KOG1177|consen 290 CVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGAPVSPELLKL 369 (596)
T ss_pred HHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCCCCCHHHHHH
Confidence 5 778999999999999999999999999999999999999999999999988888889999999999999999999988
Q ss_pred HHhhCCCCceecccccccccceeccCCcCC--CCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccC
Q 005501 491 LSSKAWYNAIIESCGGTELSSAYIQGSLLQ--PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYL 563 (693)
Q Consensus 491 ~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~ 563 (693)
+.....=..+...||+||++...+.....+ .+...++|+.+++.+..|+|.+|.++|.|++ |||++ +.||+
T Consensus 370 iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~~~g~~v~~~~~--Gel~iRGY~tMl~Yw 447 (596)
T KOG1177|consen 370 IVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVDKDGSEVPLGTK--GELLIRGYSTMLGYW 447 (596)
T ss_pred HHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhcccccccccccCCCCccccCCC--ceEEEEechhheeec
Confidence 876543234788999999997555444322 2345689999999999999999999999997 99998 45667
Q ss_pred CCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEE
Q 005501 564 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAA 643 (693)
Q Consensus 564 ~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~V 643 (693)
+ +++.|.+.. ..+|||+|||.+++|++|+++++||+||+|+.+|++|+|.|||..|. +||.|.++.|
T Consensus 448 g------~~~kT~eti------~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~-~hp~V~~a~V 514 (596)
T KOG1177|consen 448 G------EEEKTKETI------GNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLN-KHPLVKEAHV 514 (596)
T ss_pred C------Ccccchhhc------ccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHh-hCCCeeeEEE
Confidence 6 333454433 34679999999999999999999999999999999999999999996 9999999999
Q ss_pred EeecCCCCCceEEEEEEEecCCCC--CChHHHHHHHHHHHHhhcCCCceec
Q 005501 644 ISVSPAGGGPEVLVIFVVLKKGFT--SQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 644 v~~~~~~~g~~~l~a~vv~~~~~~--~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
|+++|+..| +.+||+|-++.+.. .+.++|+.+|+.+|..+.+|.++++
T Consensus 515 VGV~D~R~G-E~VCA~vRLqe~~e~~~t~E~lKa~Ck~klaHFKiPky~vf 564 (596)
T KOG1177|consen 515 VGVPDERLG-EEVCACVRLQEGAEGKTTAETLKAMCKGKLAHFKIPKYFVF 564 (596)
T ss_pred EccCCCccc-ceEEEEEEeeccccccccHHHHHHHHhcccccccCCcEEEE
Confidence 999999999 99999999998764 5889999999999999999999875
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-66 Score=578.41 Aligned_cols=468 Identities=24% Similarity=0.272 Sum_probs=386.5
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++.+|+++|+++.+... ++||+||.++++++|++|++. |++||+|+|+++|+++++++++||+++|++++|++
T Consensus 21 a~~~~~~~a~~~~~~~~------~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~Gav~vpln 94 (534)
T COG0318 21 ARRNPDRPALIFLGRGG------RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLN 94 (534)
T ss_pred HHhCCCceEEEEcCCCc------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeecC
Confidence 46899999999988720 399999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCc-ccHHHHhcccCCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD-LSWKDFLSSVDYHP 343 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 343 (693)
|.+..+++.++++++++++++++..+. +....+....+....+....... ... ..+++.......
T Consensus 95 ~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-- 160 (534)
T COG0318 95 PRLTPRELAYILNDAGAKVLITSAEFA------ALLEAVAEALPVVLVVLLVGDAD------DRLPITLEALAAEGPG-- 160 (534)
T ss_pred cccCHHHHHHHHHhcCCeEEEEcccch------hHHHHHhccCCcceEEEeccccc------ccccccHHHHhhccCC--
Confidence 999999999999999999999997521 12222222222211111111100 000 245555332211
Q ss_pred CCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcC--CCCCCEEEEeCCccccchhHH-HHHHHH
Q 005501 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID--LKVGDVYCWPTNLGWVMGPVI-LFSSFL 420 (693)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~~~~~~~~~~~-~~~~L~ 420 (693)
.........++|+|+|+|||||||.||||++||+++..+.......++ ++++|+++..+|++|++++.. ++.+++
T Consensus 161 --~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~ 238 (534)
T COG0318 161 --PDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLL 238 (534)
T ss_pred --cccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHH
Confidence 111111257899999999999999999999999999988888878888 899999999999999999965 445588
Q ss_pred cCCEEEEecC-CCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCcc-ccEEEeecCCCCcchHHHHHhhCCCC
Q 005501 421 NGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK-IRSFASTGETSNVDDDLWLSSKAWYN 498 (693)
Q Consensus 421 ~G~~lvi~~~-~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~-lr~v~~gGe~l~~~~~~~~~~~~~~~ 498 (693)
.|+++++.++ .+++..++..+.++++|++.++|+++..|+........++.+ ||.+++||+++++++.+.+.++++..
T Consensus 239 ~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~ 318 (534)
T COG0318 239 GGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPI 318 (534)
T ss_pred cCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCCC
Confidence 9999998875 578889999999999999999999999999886665555565 99999999999999999999998766
Q ss_pred ceecccccccccceeccCCcCC-CCccCccCCCCCCceEEEECCCCC-CCCCCCCceeeEEE-----ecccCCCcccccc
Q 005501 499 AIIESCGGTELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGV-PYPDDQPCVGEVGL-----FPLYLGASDRLLN 571 (693)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~~~ild~~~~-~~p~G~~giGel~v-----~~gy~~~~~~~~~ 571 (693)
++++.||+||++..++...... ....+.+|+|+||++++|+|+++. ++| |. +|||++ ..||++ +
T Consensus 319 ~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~--vGei~irgp~v~~GY~~------~ 389 (534)
T COG0318 319 AILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GE--VGEIWVRGPNVMKGYWN------R 389 (534)
T ss_pred ceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CC--ceEEEEECchhhhhhcC------C
Confidence 8999999999997666655544 235667799999999999997765 666 77 599998 567777 4
Q ss_pred cccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCC
Q 005501 572 ADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 651 (693)
Q Consensus 572 ~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~ 651 (693)
++.|++.|.. ++||+|||+|++|+||+++|.||.+|+||++|++|+|.|||.+|. +||+|.+|+|++++++..
T Consensus 390 pe~t~~~f~~------~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~-~~~~V~~aavvgvpd~~~ 462 (534)
T COG0318 390 PEATAEAFDE------DGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLA-EHPAVAEAAVVGVPDERW 462 (534)
T ss_pred hHHHHHhhcc------CCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHH-hCCCcceEEEEeCCCCcc
Confidence 4577766654 349999999999999999999999999999999999999999995 999999999999999999
Q ss_pred CceEEEEEEEecCC--CCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 652 GPEVLVIFVVLKKG--FTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 652 g~~~l~a~vv~~~~--~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
| +.++|+|+++++ ...+.++++++|+++|+.|.+|..++.
T Consensus 463 G-e~~~a~v~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~v~~ 504 (534)
T COG0318 463 G-ERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRIVVF 504 (534)
T ss_pred C-ceEEEEEEEcCCCCCCCCHHHHHHHHHhhhhcccCCeEEEE
Confidence 8 999999999986 345789999999999999999998875
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-66 Score=584.18 Aligned_cols=462 Identities=20% Similarity=0.207 Sum_probs=381.6
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
+++++||++|+++.++ ++||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 58 ~a~~~pd~~Al~~~~~--------~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~l 129 (549)
T PRK07788 58 AARRAPDRAALIDERG--------TLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILL 129 (549)
T ss_pred HHHHCCCceEEEECCC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEe
Confidence 4578999999998766 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC-ceEEEcCCCCCCCCCCCCCcccHHHHhcccCCC
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (693)
++.++.+++.+++++++++++|+++.... .+..+....+. ..+........ ....+...++++......
T Consensus 130 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~- 199 (549)
T PRK07788 130 NTGFSGPQLAEVAAREGVKALVYDDEFTD------LLSALPPDLGRLRAWGGNPDDDE---PSGSTDETLDDLIAGSST- 199 (549)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhHH------HHHhhccccccceEEEEecCccc---cCCcCcccHHHHhcCCCC-
Confidence 99999999999999999999999875321 11111111111 11111111100 111234567776654322
Q ss_pred CCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHcC
Q 005501 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (693)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G 422 (693)
...+...++.++|+|||||||+||||+++|+++.+.+......+++.++|+++...|++|..++..++.++..|
T Consensus 200 ------~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G 273 (549)
T PRK07788 200 ------APLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMALG 273 (549)
T ss_pred ------CCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhCCCCcCCeEEEccchHHHHHHHHHHHHHHhC
Confidence 11123457889999999999999999999999998888777788899999999999999999988888899999
Q ss_pred CEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcC--CCCCCccccEEEeecCCCCcchHHHHHhhCCCCce
Q 005501 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (693)
Q Consensus 423 ~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (693)
+++++.. ..++..+++.++++++|++.++|+++..|++.... ...++++||.+++|||++++++.+++.+.+ +..+
T Consensus 274 ~~~v~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~l 351 (549)
T PRK07788 274 STVVLRR-RFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAF-GPVL 351 (549)
T ss_pred CEEEECC-CCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHh-Cccc
Confidence 9998875 56889999999999999999999999999876543 455678999999999999999999988776 4689
Q ss_pred ecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEEe-----cccCCCcccccccccc
Q 005501 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHE 575 (693)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v~-----~gy~~~~~~~~~~~~t 575 (693)
+|.||+||++...+..........+++|+|++|++++|+|+++++++.|+. |||++. .||++.+. .
T Consensus 352 ~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~gY~~~~~------~- 422 (549)
T PRK07788 352 YNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVV--GRIFVGNGFPFEGYTDGRD------K- 422 (549)
T ss_pred eeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEEECCCcCCCCCCCe--EEEEEeCCCccccccCCCc------c-
Confidence 999999999865443322223345789999999999999999999999984 999993 45554321 1
Q ss_pred cccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceE
Q 005501 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (693)
Q Consensus 576 ~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~ 655 (693)
.. . ++||+|||+|++++||+++|.||+||+||++|++|+|.|||++|. +||+|.+|+|++.+++..+ +.
T Consensus 423 -~~------~--~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~-~~~~V~~~~v~~~~~~~~g-~~ 491 (549)
T PRK07788 423 -QI------I--DGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLA-GHPDVVEAAVIGVDDEEFG-QR 491 (549)
T ss_pred -cc------c--CCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHH-hCCCeeEEEEECCcCcccc-cE
Confidence 11 1 239999999999999999999999999999999999999999995 9999999999999988877 89
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
++|||+++++...+.++++++++++||.|++|..++.
T Consensus 492 ~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~ 528 (549)
T PRK07788 492 LRAFVVKAPGAALDEDAIKDYVRDNLARYKVPRDVVF 528 (549)
T ss_pred EEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCCcEEEE
Confidence 9999999887778889999999999999999998875
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-64 Score=570.52 Aligned_cols=486 Identities=22% Similarity=0.309 Sum_probs=399.5
Q ss_pred CcCCCCccchhhhhccCcccCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH
Q 005501 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (693)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~ 244 (693)
.|+.+...|....++++++ +..+|+++|+++.+.. ..+++||+||.++++++|++|.+. +++||+|+++++|++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~----~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~ 109 (570)
T PRK04319 35 SWLETGKVNIAYEAIDRHA-DGGRKDKVALRYLDAS----RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIP 109 (570)
T ss_pred ccCCCCceeHHHHHHHHhh-ccCCCCceEEEEECCC----CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCH
Confidence 6888888999988887654 1357999999986531 234899999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCCC
Q 005501 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVG 322 (693)
Q Consensus 245 ~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 322 (693)
++++++|||+++|++++|+++.++.+++.+++++++++++|++......... ...+. .++++.....
T Consensus 110 ~~~~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~--- 178 (570)
T PRK04319 110 ELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPA--------DDLPSLKHVLLVGEDVE--- 178 (570)
T ss_pred HHHHHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccch--------hcCCCceEEEEECCCcC---
Confidence 9999999999999999999999999999999999999999998754321110 01111 2222221110
Q ss_pred CCCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEE
Q 005501 323 IPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCW 402 (693)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~ 402 (693)
...+..++.++...... ........++++++|+|||||||.||||+++|+++++.+......++++++|++++
T Consensus 179 --~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~d~~~~ 251 (570)
T PRK04319 179 --EGPGTLDFNALMEQASD-----EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDDVYWC 251 (570)
T ss_pred --CCcCccCHHHHHhhcCC-----cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhcCCCCCceEEe
Confidence 11233456665543322 11223345789999999999999999999999999888877777888999999999
Q ss_pred eCCccccchh-HHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCc--CCCCCCccccEEEee
Q 005501 403 PTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFAST 479 (693)
Q Consensus 403 ~~~~~~~~~~-~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~g 479 (693)
..++.|.++. +.++.+++.|+++++.+...++..+++.|+++++|++.++|++++.|.+... ....++++||.+++|
T Consensus 252 ~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~g 331 (570)
T PRK04319 252 TADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSV 331 (570)
T ss_pred cCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEc
Confidence 9999999886 6788999999999998777789999999999999999999999999987542 234567899999999
Q ss_pred cCCCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEEe
Q 005501 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF 559 (693)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v~ 559 (693)
|+++++++.+++.+.+ +.++++.||+||++..++..........+++|+|++|++++|+|++++++|.|+. |||++.
T Consensus 332 G~~l~~~~~~~~~~~~-g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~g~~--Gel~i~ 408 (570)
T PRK04319 332 GEPLNPEVVRWGMKVF-GLPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVDDQGNELPPNRM--GNLAIK 408 (570)
T ss_pred ccCCCHHHHHHHHHHh-CCCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEECCCCCCCCCCCc--eEEEEc
Confidence 9999999999888765 5789999999999875544333333456789999999999999999999999985 999984
Q ss_pred -------cccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHh
Q 005501 560 -------PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (693)
Q Consensus 560 -------~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~ 632 (693)
.||++ +++.++++|. +| ||+|||+|++++||+++++||.||+||++|++|+|.|||++|.
T Consensus 409 ~~~~~~~~GY~~------~~~~~~~~~~-----~g--w~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~ 475 (570)
T PRK04319 409 KGWPSMMRGIWN------NPEKYESYFA-----GD--WYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLM 475 (570)
T ss_pred CCCChHHhHhcC------CHHHhhhhhc-----CC--ceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHh
Confidence 26666 4446666664 13 9999999999999999999999999999999999999999996
Q ss_pred ccCcccceeEEEeecCCCCCceEEEEEEEecCCCCCCh---HHHHHHHHHHHHhhcCCCceec
Q 005501 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP---DKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 633 ~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~---~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
+||+|.+++|++.+++..| +.+++|+++.++...+. ++++++++++|+.|+.|..++.
T Consensus 476 -~~~~V~~~~v~g~~~~~~g-~~~~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~ 536 (570)
T PRK04319 476 -EHPAVAEAGVIGKPDPVRG-EIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPREIEF 536 (570)
T ss_pred -hCCCeeecceecccCcCCc-eEEEEEEEECCCCCCCHHHHHHHHHHHHHhcccccCCcEEEE
Confidence 9999999999999998888 99999999987654332 5799999999999999998865
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-64 Score=585.99 Aligned_cols=441 Identities=17% Similarity=0.178 Sum_probs=364.6
Q ss_pred CCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCC
Q 005501 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (693)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~ 266 (693)
.+||++|+++ +. .+||+||+++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|+||.
T Consensus 18 ~~pd~~a~~~-~~--------~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG~~~vpi~p~ 88 (705)
T PRK06060 18 GWYDRPAFYA-AD--------VVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPE 88 (705)
T ss_pred cCCCceEEEe-cC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEecCCC
Confidence 3799999985 34 799999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCCC
Q 005501 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN 346 (693)
Q Consensus 267 ~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (693)
++.+++.+++++++++++|++......... .. ...+.++...... ..
T Consensus 89 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~------------~~------------------~~~~~~~~~~~~~---~~ 135 (705)
T PRK06060 89 LHRDDHALAARNTEPALVVTSDALRDRFQP------------SR------------------VAEAAELMSEAAR---VA 135 (705)
T ss_pred CCHHHHHHHHhcCCCcEEEEchHHhhhhcc------------cc------------------cchhhhhhhhccc---cC
Confidence 999999999999999999998643211000 00 0001111111000 00
Q ss_pred CCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhc-hhcCCCCCCEEEEeCCccccchh-HHHHHHHHcCCE
Q 005501 347 YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW-AHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGAT 424 (693)
Q Consensus 347 ~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~ 424 (693)
........++++|||+|||||||+||||+++|+++.+.+.+.. ..++++++|++++.+++.|++++ ..++.+|..|++
T Consensus 136 ~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~ 215 (705)
T PRK06060 136 PGGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGS 215 (705)
T ss_pred CCCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCE
Confidence 0011223568999999999999999999999999988776553 45788899999999999999887 668899999999
Q ss_pred EEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceeccc
Q 005501 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (693)
Q Consensus 425 lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (693)
+++.+...++..+..+++++++|+++++|+++..|++... ..++++||.+++|||++++++.+++.+.+++++++|.|
T Consensus 216 ~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~Y 293 (705)
T PRK06060 216 AVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGI 293 (705)
T ss_pred EEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeee
Confidence 9998766677888999999999999999999999987532 33578999999999999999999998888778999999
Q ss_pred ccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccccccccc
Q 005501 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYF 579 (693)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f 579 (693)
|+||++..+.... ......+++|+|+++++++|+|++++++|.|+. |||+| +.||++.++ .+ +
T Consensus 294 G~tE~~~~~~~~~-~~~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~~--GEl~i~g~~v~~GY~~~~~------~~---~ 361 (705)
T PRK06060 294 GSTEVGQTFVSNR-VDEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVE--GDLWVRGPAIAKGYWNRPD------SP---V 361 (705)
T ss_pred eccccCceEEecc-CCCCCcCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEccchhhhhhhCCCc------cc---c
Confidence 9999986543332 223345789999999999999999999999995 99999 457877443 21 1
Q ss_pred cccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEE
Q 005501 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659 (693)
Q Consensus 580 ~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~ 659 (693)
.+.+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. +||+|.+++|+++++...+ +.+++|
T Consensus 362 ------~~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~~~V~~a~vv~~~~~~~~-~~~~a~ 433 (705)
T PRK06060 362 ------ANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLII-EDEAVAEAAVVAVRESTGA-STLQAF 433 (705)
T ss_pred ------cCCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeecCccCC-eeEEEE
Confidence 13459999999999999999999999999999999999999999996 9999999999999987776 899999
Q ss_pred EEecCCCCCCh---HHHHHHHHHHHHhhcCCCceec
Q 005501 660 VVLKKGFTSQP---DKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 660 vv~~~~~~~~~---~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
|++.++...+. .+++++|+++||.||+|..++.
T Consensus 434 vv~~~~~~~~~~~~~~i~~~l~~~L~~~~~P~~i~~ 469 (705)
T PRK06060 434 LVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAV 469 (705)
T ss_pred EEeccccCcChHHHHHHHHHHHHhCCCCcCCcEEEE
Confidence 99876544443 4788999999999999998875
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-64 Score=573.36 Aligned_cols=487 Identities=21% Similarity=0.195 Sum_probs=380.4
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
|+++|+++|+++..........+++||+||.++++++|++|++. +++||+|+++++|++++++++|||+++| +++|++
T Consensus 35 a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~~~G-i~~pi~ 113 (632)
T PRK07529 35 AARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGEAAG-IANPIN 113 (632)
T ss_pred HHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC-EEEeCC
Confidence 47899999999753321222345999999999999999999999 9999999999999999999999999999 569999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCCC---C-------CCCCCcccH
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVG---I-------PLREQDLSW 332 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~-------~~~~~~~~~ 332 (693)
|.++++++.+++++++++++|++..+... .............+. .++.++....... . ....+..+|
T Consensus 114 ~~~~~~~i~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (632)
T PRK07529 114 PLLEPEQIAELLRAAGAKVLVTLGPFPGT-DIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDF 192 (632)
T ss_pred CcCCHHHHHHHHHhcCCcEEEEeCCCCCc-hHHHHHHHHHhcCCcceeEEEecCcccccccccccccccccccccccCCH
Confidence 99999999999999999999998753210 001111111222222 1222221110000 0 011223455
Q ss_pred HHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchh
Q 005501 333 KDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP 412 (693)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 412 (693)
.+.+..... ..........++++++++|||||||.||||+++|+++.+........+++.++|++++..|++|..+.
T Consensus 193 ~~~~~~~~~---~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~ 269 (632)
T PRK07529 193 DAELARQPG---DRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFHVNAL 269 (632)
T ss_pred HHHHhcCCC---ccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhcCCCCCCEEEEecCchhhhHH
Confidence 555443321 11111223467999999999999999999999999998887777677888999999999999998887
Q ss_pred -HHHHHHHHcCCEEEEecCC-C-C---hhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcc
Q 005501 413 -VILFSSFLNGATLALYQGS-P-L---ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVD 486 (693)
Q Consensus 413 -~~~~~~L~~G~~lvi~~~~-~-~---~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~ 486 (693)
..++.+|..|+++++.+.. . + ...++++++++++|++.++|+++..|++... ...++++||.+++||++++++
T Consensus 270 ~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~~slr~v~~gg~~l~~~ 348 (632)
T PRK07529 270 LVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV-DGHDISSLRYALCGAAPLPVE 348 (632)
T ss_pred HHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-cCCCccceEEEEEcCCCCCHH
Confidence 5688999999999997632 1 2 2578899999999999999999999987643 234688999999999999999
Q ss_pred hHHHHHhhCCCCceecccccccccceeccCCcCCCCccCccCCCCCCceEEE--ECCCC---CCCCCCCCceeeEEE-ec
Q 005501 487 DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVI--LDECG---VPYPDDQPCVGEVGL-FP 560 (693)
Q Consensus 487 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i--ld~~~---~~~p~G~~giGel~v-~~ 560 (693)
+.+++++.+ +++++|.||+||++..............+++|+|+|++.++| +|++| +++|.|+. |||+| ++
T Consensus 349 l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~--Gel~v~gp 425 (632)
T PRK07529 349 VFRRFEAAT-GVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEV--GVLCIAGP 425 (632)
T ss_pred HHHHHHHHh-CCcEeeeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCc--eEEEEECC
Confidence 999988775 689999999999987555443333446789999999999888 47777 88999984 99998 22
Q ss_pred ccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccce
Q 005501 561 LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 640 (693)
Q Consensus 561 gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~ 640 (693)
+.+. +|++++.+...|. +.+||+|||+|++++||+++|.||+||+||++|++|+|.|||++|. +||+|.+
T Consensus 426 ~v~~---GY~~~~~~~~~~~------~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~-~~p~V~~ 495 (632)
T PRK07529 426 NVFS---GYLEAAHNKGLWL------EDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALL-RHPAVAL 495 (632)
T ss_pred Cccc---cccCCcccccccc------CCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHH-hCCCeeE
Confidence 2222 1334444444443 2459999999999999999999999999999999999999999996 9999999
Q ss_pred eEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHh-hcCCCceec
Q 005501 641 TAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVW 692 (693)
Q Consensus 641 a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~-~m~P~~~v~ 692 (693)
|+|++.+++..| +.++|||++.++...+.++++++++++|++ +++|..++.
T Consensus 496 a~vvg~~d~~~g-e~~~a~v~l~~~~~~~~~~l~~~~~~~l~~~~~~P~~i~~ 547 (632)
T PRK07529 496 AAAVGRPDAHAG-ELPVAYVQLKPGASATEAELLAFARDHIAERAAVPKHVRI 547 (632)
T ss_pred EEEEeccCCCCC-ceeEEEEEEcCCCCCCHHHHHHHHHHhcchhccCCcEEEE
Confidence 999999998887 999999999988778889999999999975 799988765
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=568.58 Aligned_cols=463 Identities=18% Similarity=0.184 Sum_probs=364.3
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
.++++|+++|+++.+.+ ++||+||.++++++|++|.+. +||+|+|+++|++++++++|||+++|++++|++
T Consensus 28 ~~~~~p~~~a~~~~~~~-------~~Ty~el~~~~~~lA~~L~~~--~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl~ 98 (539)
T PRK06334 28 LCSEMTTATVCWDEQLG-------KLSYNQVRKAVIALATKVSKY--PDQHIGIMMPASAGAYIAYFATLLSGKIPVMIN 98 (539)
T ss_pred HHHhCCCceEEEeCCCC-------cccHHHHHHHHHHHHHHHhhc--cCCeEEEEcCCchHHHHHHHHHHhcCCeeEecC
Confidence 44789999999876532 899999999999999999874 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhc---CCCceEEEcCCCCCCCCCCCCCcccHHHHhcccC-
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVD- 340 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 340 (693)
|.++.+++.+++++++++++|++..... .+...... .+..++.++.... ...+.+......
T Consensus 99 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~ 163 (539)
T PRK06334 99 WSQGLREVTACANLVGVTHVLTSKQLMQ------HLAQTHGEDAEYPFSLIYMEEVRK---------ELSFWEKCRIGIY 163 (539)
T ss_pred cccchHHHHHHHHHcCCCEEEehHHHHH------HHhhhhhccccccccEEEEehhhh---------hccHHHhhhhhhh
Confidence 9999999999999999999999865321 11111110 1122232221100 001111100000
Q ss_pred -CCCCC---CCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchh-HHH
Q 005501 341 -YHPRP---NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VIL 415 (693)
Q Consensus 341 -~~~~~---~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~ 415 (693)
..+.. .........++++++|+|||||||.||||+++|+++.+...+....++++++|++++++|++|.+++ ..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~ 243 (539)
T PRK06334 164 MSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCT 243 (539)
T ss_pred hcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCCCceEEEecchHhhhhhHHHH
Confidence 00000 0011123467999999999999999999999999998887777777889999999999999999987 457
Q ss_pred HHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhC
Q 005501 416 FSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (693)
Q Consensus 416 ~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~ 495 (693)
+.++..|+++++.....++..+++.|+++++|++.++|++++.|++.......++++||.+++||+++++++.+++.+.+
T Consensus 244 ~~~l~~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~ 323 (539)
T PRK06334 244 LFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTF 323 (539)
T ss_pred HHHHHcCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHHC
Confidence 88999999999876556889999999999999999999999999876544456688999999999999999999998888
Q ss_pred CCCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECC-CCCCCCCCCCceeeEEE-----ecccCCCcccc
Q 005501 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGL-----FPLYLGASDRL 569 (693)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~-~~~~~p~G~~giGel~v-----~~gy~~~~~~~ 569 (693)
+++.++|.||+||++..++...........++|+|++|++++|+|+ .++++|.|+. |||++ +.||++.++
T Consensus 324 ~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~--Gel~v~g~~~~~GY~~~~~-- 399 (539)
T PRK06334 324 PHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGET--GLVLTRGTSLFSGYLGEDF-- 399 (539)
T ss_pred CCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccCCCCce--EEEEEecCcccccccCCcc--
Confidence 7889999999999987655443333334568999999999999995 5889999984 99998 457776432
Q ss_pred cccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccce------eEE
Q 005501 570 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE------TAA 643 (693)
Q Consensus 570 ~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~------a~V 643 (693)
.+ .|.. .++++||+|||+|++++||+|+|.||.||+||++|++|+|.|||++|. +||+|.+ ++|
T Consensus 400 ----~~--~~~~---~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~~~v~~~~~~~~~~v 469 (539)
T PRK06334 400 ----GQ--GFVE---LGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILM-EGFGQNAADHAGPLVV 469 (539)
T ss_pred ----cc--ccee---eCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHH-HccCCccccccCceEE
Confidence 22 2321 135569999999999999999999999999999999999999999996 9999998 777
Q ss_pred EeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHH-HHhhcCCCceec
Q 005501 644 ISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA-IQSKLNPLFKVW 692 (693)
Q Consensus 644 v~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~-L~~~m~P~~~v~ 692 (693)
++.+++ . ..+++|++.. .+.++++++|+++ ++.||.|..+..
T Consensus 470 ~~~~~~--~-~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~P~~i~~ 512 (539)
T PRK06334 470 CGLPGE--K-VRLCLFTTFP----TSISEVNDILKNSKTSSILKISYHHQ 512 (539)
T ss_pred EcCCCC--c-eEEEEEEecc----CChHHHHHHHHhcCCcccccchheee
Confidence 777642 1 4677777643 3457899999996 789999987654
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-64 Score=567.76 Aligned_cols=466 Identities=18% Similarity=0.148 Sum_probs=368.8
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
+++++|+++|+++.++ ++||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 16 ~~~~~p~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~Gav~vpl 87 (563)
T PLN02860 16 LATLRGNAVVTISGNR--------RRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPL 87 (563)
T ss_pred HHHhcCCceEEecCCc--------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhccEEEEeC
Confidence 4578999999998665 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHh-hcCCC-c-eEEEcCCCCCCCCCCCCCcccHHHHhcccC
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL-GAAPL-K-AIVLPAIGNDVGIPLREQDLSWKDFLSSVD 340 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~-~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (693)
++.++.+++.+++++++++++++++.... ....+. ...+. . .++......... ........++++.....
T Consensus 88 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 160 (563)
T PLN02860 88 NYRWSFEEAKSAMLLVRPVMLVTDETCSS------WYEELQNDRLPSLMWQVFLESPSSSVF-IFLNSFLTTEMLKQRAL 160 (563)
T ss_pred CcccCHHHHHHHHHhcCceEEEEecccch------HHHHHhhccCCceeEEEEecCcccccc-cchhhccccchhccCcc
Confidence 99999999999999999999999875321 111111 11111 1 111111100000 00000111111111100
Q ss_pred CCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHH
Q 005501 341 YHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420 (693)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~ 420 (693)
. .........++++++|+|||||||+||||+++|+++..........++++++|+++..+|++|+.++..++.++.
T Consensus 161 ~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~ 236 (563)
T PLN02860 161 G----TTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLM 236 (563)
T ss_pred c----cccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhcCCCCCCEEEEecCchhhccHHHHHHHHH
Confidence 0 000111235789999999999999999999999999877666666788999999999999999999988899999
Q ss_pred cCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcC--CCCCCccccEEEeecCCCCcchHHHHHhhCCCC
Q 005501 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (693)
Q Consensus 421 ~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~ 498 (693)
.|+++++.+ ..++..+++.|+++++|++.++|+++..|++.... ....+++||.+++||+++++++.+++.+.+++.
T Consensus 237 ~G~~~v~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~ 315 (563)
T PLN02860 237 VGACHVLLP-KFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNA 315 (563)
T ss_pred cCceEEecC-CCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCC
Confidence 999999986 56888999999999999999999999999875322 224578999999999999999999998888888
Q ss_pred ceecccccccccceeccCCcCC----------------------CCccCccCCCCCCceEEEECCCCCCCCCCCCceeeE
Q 005501 499 AIIESCGGTELSSAYIQGSLLQ----------------------PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV 556 (693)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~~----------------------~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel 556 (693)
+++|.||+||+++.++...... .....++|+|+++++++|+|++ .|+ +|||
T Consensus 316 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~-----~g~--~Gel 388 (563)
T PLN02860 316 KLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE-----SSR--VGRI 388 (563)
T ss_pred ceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCC-----CCc--eeEE
Confidence 9999999999976443222111 0112378999999999999976 466 5999
Q ss_pred EE-----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHH
Q 005501 557 GL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVC 631 (693)
Q Consensus 557 ~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L 631 (693)
++ ..||++ +++.|++.|.. ++||+|||+|++++||+++|+||+||+||++|++|+|.|||++|
T Consensus 389 ~v~g~~~~~GY~~------~~~~t~~~~~~------~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l 456 (563)
T PLN02860 389 LTRGPHVMLGYWG------QNSETASVLSN------DGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVL 456 (563)
T ss_pred EEecCcccccccC------CccccchhccC------CCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHH
Confidence 98 457776 44466666643 24999999999999999999999999999999999999999999
Q ss_pred hccCcccceeEEEeecCCCCCceEEEEEEEecCCC--------------CCChHHHHHHHHH-HHHhhcCCCcee
Q 005501 632 DQADESILETAAISVSPAGGGPEVLVIFVVLKKGF--------------TSQPDKLKMIFSK-AIQSKLNPLFKV 691 (693)
Q Consensus 632 ~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~--------------~~~~~~l~~~l~~-~L~~~m~P~~~v 691 (693)
. +||+|.+|+|++++++..+ +.++|||+++++. ..+.+++++++++ +|+.|++|..++
T Consensus 457 ~-~~p~V~~~~v~~~~~~~~~-~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~~~~ 529 (563)
T PLN02860 457 S-QHPGVASVVVVGVPDSRLT-EMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFV 529 (563)
T ss_pred H-hCCCcceeEEEEEecCcCC-ceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccceEEE
Confidence 5 9999999999999998877 9999999988652 3556789999998 599999998875
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=553.47 Aligned_cols=451 Identities=69% Similarity=1.141 Sum_probs=339.9
Q ss_pred cCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCC
Q 005501 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN 319 (693)
Q Consensus 240 ~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (693)
++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++......+..+...++........+++...+.
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE 80 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence 58999999999999999999999999999999999999999999999875422212222223322222223333321111
Q ss_pred CCCCCCCCCcccHHHHhcccCCC--CCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCC
Q 005501 320 DVGIPLREQDLSWKDFLSSVDYH--PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG 397 (693)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~ 397 (693)
...........+|+++....... ............++++++|+|||||||.||||+++|++++.........++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~ 160 (499)
T PLN03051 81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHMDIQPG 160 (499)
T ss_pred ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhcCCCCC
Confidence 00000011234566665321100 0000111112356899999999999999999999999987766555566788999
Q ss_pred CEEEEeCCccccchhHHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCc--CCCCCCccccE
Q 005501 398 DVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRS 475 (693)
Q Consensus 398 d~~l~~~~~~~~~~~~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~ 475 (693)
|++++.+|++|+.+.+.++.+|+.|+++++.+...++..+++.|+++++|++.++|+++..|++... ....++++||.
T Consensus 161 d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr~ 240 (499)
T PLN03051 161 DVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRV 240 (499)
T ss_pred CEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhheE
Confidence 9999999999999988888999999999998765677899999999999999999999999987542 23456889999
Q ss_pred EEeecCCCCcchHHHHHhhCC-CCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCcee
Q 005501 476 FASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVG 554 (693)
Q Consensus 476 v~~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giG 554 (693)
+++|||+++++..+++.+..+ ++.++|.||+||++..++..........+++|+|++|++++|+|++|+++|.|+..+|
T Consensus 241 i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~g~~~~~g~~~~G 320 (499)
T PLN03051 241 FASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLNDNGVPYPDDQPCVG 320 (499)
T ss_pred EEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEECCCCCCCCCCCCcce
Confidence 999999999998887766332 3689999999998754433322233345789999999999999999999999852259
Q ss_pred eEEEecccCCCcccccccccccccccccccC--CCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHh
Q 005501 555 EVGLFPLYLGASDRLLNADHEEVYFRGMPMY--KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (693)
Q Consensus 555 el~v~~gy~~~~~~~~~~~~t~~~f~~~p~~--~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~ 632 (693)
||++...+++...+|++++.++.+|...|+. ++.+||+|||+|++|+||+|+|+||.||+||++|+||+|.|||++|.
T Consensus 321 el~v~g~~~~~~~gy~~~~~~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~ 400 (499)
T PLN03051 321 EVALAPPMLGASDRLLNADHDKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACD 400 (499)
T ss_pred EEEEecCcCCCCccccCCcccceeeecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHH
Confidence 9999655554445566665555555544543 56789999999999999999999999999999999999999999995
Q ss_pred cc-CcccceeEEEeecCCCCCceEEEEEE---EecCCC-CCChHHHHHHHHHHHH----hhcCCCcee
Q 005501 633 QA-DESILETAAISVSPAGGGPEVLVIFV---VLKKGF-TSQPDKLKMIFSKAIQ----SKLNPLFKV 691 (693)
Q Consensus 633 ~~-~p~V~~a~Vv~~~~~~~g~~~l~a~v---v~~~~~-~~~~~~l~~~l~~~L~----~~m~P~~~v 691 (693)
+ ||+|.+|+|++++++..|.+.++||| +++++. ..+.++++++|+++|. .|+.|..+.
T Consensus 401 -~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~i~ 467 (499)
T PLN03051 401 -RAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSRVK 467 (499)
T ss_pred -hcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHHhhcCCccCCceEE
Confidence 5 99999999999999887756899999 877764 4667888888776654 444454443
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-63 Score=557.61 Aligned_cols=460 Identities=17% Similarity=0.154 Sum_probs=374.8
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
+++++||++|+++.++ ++||+||+++++++|++|.++ +++|++|+++++|++++++++|||+++|++++|+
T Consensus 52 ~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 123 (537)
T PRK13382 52 AAQRCPDRPGLIDELG--------TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLL 123 (537)
T ss_pred HHHhCCCCeEEEeCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCcEEEec
Confidence 4578999999998765 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCCCCCCCCCcccHHHHhcccCC
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (693)
+|.++.+++.+++++++++++|++.... ..+.......+. ..+.++.. .....++++......
T Consensus 124 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 188 (537)
T PRK13382 124 NTSFAGPALAEVVTREGVDTVIYDEEFS------ATVDRALADCPQATRIVAWTDE---------DHDLTVEVLIAAHAG 188 (537)
T ss_pred CcccCHHHHHHHHHhcCCCEEEEchhhH------HHHHHHHhhccccceEEEecCC---------cccccHHHHhhccCc
Confidence 9999999999999999999999987532 111111111111 11111110 012234444332211
Q ss_pred CCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHc
Q 005501 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (693)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~ 421 (693)
. .....+++.++++|||||||+||||+++|+++..........+.+..+++++...|++|+.++..++.++..
T Consensus 189 ------~-~~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~ 261 (537)
T PRK13382 189 ------Q-RPEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVIVAPMFHAWGFSQLVLAASL 261 (537)
T ss_pred ------C-CCCCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhhCCCCCCeEEEecChHhhhHHHHHHHHHhc
Confidence 0 111246889999999999999999999999988877777777888899999999999999998888999999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcC--CCCCCccccEEEeecCCCCcchHHHHHhhCCCCc
Q 005501 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (693)
Q Consensus 422 G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (693)
|+++++.+ ..++..+++.|+++++|++..+|++++.|++.... ...+++++|.+++|||++++++.+.+.+.++ .+
T Consensus 262 g~~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~-~~ 339 (537)
T PRK13382 262 ACTIVTRR-RFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFG-DV 339 (537)
T ss_pred CcEEEECC-CcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcC-Cc
Confidence 99988865 56789999999999999999999999999875421 2345678999999999999999988888774 67
Q ss_pred eecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-ecccCCCccccccccccccc
Q 005501 500 IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVY 578 (693)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-~~gy~~~~~~~~~~~~t~~~ 578 (693)
++|.||+||++...+..........+++|+|++|+.++|+|++++++|.|+. |||++ +++.+. +|. ++.++.
T Consensus 340 i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~---gY~-~~~~~~- 412 (537)
T PRK13382 340 IYNNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVPTGEV--GTIFVRNDTQFD---GYT-SGSTKD- 412 (537)
T ss_pred EEecccccccCcceecChhHhccCCCCccccCcCcEEEEECCCCCCCCCCCe--eEEEEEcCCccc---Ccc-ccchhh-
Confidence 9999999999875543332223456789999999999999999999999984 99998 332222 122 223322
Q ss_pred ccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEE
Q 005501 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658 (693)
Q Consensus 579 f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a 658 (693)
| .+| ||+|||++++++||+++|.||+||+||++|++|+|.|||++|. .||+|.+++|++++++..| +.+++
T Consensus 413 ~-----~~g--~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~~~V~~~~v~~~~~~~~g-~~~~a 483 (537)
T PRK13382 413 F-----HDG--FMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLA-THPDVAEAAVIGVDDEQYG-QRLAA 483 (537)
T ss_pred c-----cCC--CEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHH-hCCCEeeEEEEccCccccC-CEEEE
Confidence 2 123 9999999999999999999999999999999999999999995 9999999999999988777 89999
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 659 FVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 659 ~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
||++.++...+.++++++++++|+.|++|..++.
T Consensus 484 ~vv~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~ 517 (537)
T PRK13382 484 FVVLKPGASATPETLKQHVRDNLANYKVPRDIVV 517 (537)
T ss_pred EEEECCCCCCCHHHHHHHHHHhccCCCCCcEEEE
Confidence 9999877667778999999999999999998865
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-62 Score=551.55 Aligned_cols=473 Identities=20% Similarity=0.222 Sum_probs=381.4
Q ss_pred CCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 005501 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (693)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p 265 (693)
+.+|+++|+++.+.+ .+.++.+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|
T Consensus 35 ~~~p~~~A~~~~~~~--~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~G~~~vpl~~ 112 (547)
T PRK13295 35 ASCPDKTAVTAVRLG--TGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVLNPLMP 112 (547)
T ss_pred HHCCCceEEEecCCC--ccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhcCcEEecccc
Confidence 678999999986521 12345999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCCCCCCCCCcccHHHHhcccCCC-
Q 005501 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH- 342 (693)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 342 (693)
.++.+++.+++++++++++|+++.+.. .+.......+....+. .++.+... ...++.++.......
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 181 (547)
T PRK13295 113 IFRERELSFMLKHAESKVLVVPKTFRG-FDHAAMARRLRPELPALRHVVVVGGD----------GADSFEALLITPAWEQ 181 (547)
T ss_pred ccCHHHHHHHHHhcCceEEEEeccccC-cchHHHHHHHhhhCCCcceEEEecCC----------CccCHHHHhhCCcccc
Confidence 999999999999999999999875421 0001111112111221 12222111 112344443221100
Q ss_pred --CCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchh-HHHHHHH
Q 005501 343 --PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSF 419 (693)
Q Consensus 343 --~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L 419 (693)
............++++++|+|||||||.||||+++|+++...+......++++++++++++.|++|..++ +.++.++
T Consensus 182 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~~l 261 (547)
T PRK13295 182 EPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPV 261 (547)
T ss_pred ccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHhCCCCCCeEEEecCchhhhhHHHHHHHHH
Confidence 0001111223457899999999999999999999999998888887778889999999999999999876 6788999
Q ss_pred HcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCc
Q 005501 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (693)
Q Consensus 420 ~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (693)
..|+++++.+ ..++..+++.++++++|++.++|+++..|.........++++||.+++||+++++++.+++.+.+ +++
T Consensus 262 ~~G~~~~~~~-~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~ 339 (547)
T PRK13295 262 MLGATAVLQD-IWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAAL-GAK 339 (547)
T ss_pred HcCCeEEeCC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHHHHh-CCC
Confidence 9999999876 46788999999999999999999999999876555556788999999999999999999888776 689
Q ss_pred eecccccccccceeccCCcC-CCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccc
Q 005501 500 IIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (693)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~ 573 (693)
++|.||+||++...+..... ......++|+|+++++++|+|++++++|.|+. |||++ ..||+++ ++
T Consensus 340 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~g~~--Gel~v~g~~~~~gY~~~------~~ 411 (547)
T PRK13295 340 IVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPLPAGQI--GRLQVRGCSNFGGYLKR------PQ 411 (547)
T ss_pred eEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECCCCCCCCCCCC--CeEEEEcCcccccccCC------cc
Confidence 99999999998654433221 12234688999999999999999999999985 99998 4566663 33
Q ss_pred cccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCc
Q 005501 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (693)
Q Consensus 574 ~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~ 653 (693)
.|+.. .+| ||+|||+|++++||++++.||.||+||++|++|+|.|||++|. +||+|.+++|+++++...+
T Consensus 412 ~t~~~------~~g--~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~-~~~~v~~~~v~~~~~~~~g- 481 (547)
T PRK13295 412 LNGTD------ADG--WFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLY-RHPAIAQVAIVAYPDERLG- 481 (547)
T ss_pred ccccC------CCC--CeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHH-hCCCeeeEEEEeeecCCCC-
Confidence 44432 123 9999999999999999999999999999999999999999995 9999999999999988777
Q ss_pred eEEEEEEEecCCCCCChHHHHHHHHH-HHHhhcCCCceec
Q 005501 654 EVLVIFVVLKKGFTSQPDKLKMIFSK-AIQSKLNPLFKVW 692 (693)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~l~~~l~~-~L~~~m~P~~~v~ 692 (693)
+.++++|++.++...+.+++++++++ +|+.||+|..++.
T Consensus 482 ~~~~~~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~ 521 (547)
T PRK13295 482 ERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPERLVV 521 (547)
T ss_pred cEEEEEEEeCCCCCCCHHHHHHHHHhccCccccCCcEEEE
Confidence 89999999987766777899999997 7999999998875
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=554.53 Aligned_cols=466 Identities=19% Similarity=0.200 Sum_probs=374.5
Q ss_pred CCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
+.+|+++|+++...+ .++||+||+++++++|++|++ . +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 50 ~~~~~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~ 123 (560)
T PLN02574 50 HNHNGDTALIDSSTG------FSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMN 123 (560)
T ss_pred cccCCCCEEEECCCC------CcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcC
Confidence 468999999975442 279999999999999999999 8 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (693)
|.++.+++.++++++++++++++.... ..+.. ....++.+..... ... .......|.++......
T Consensus 124 p~~~~~~l~~~l~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~--- 188 (560)
T PLN02574 124 PSSSLGEIKKRVVDCSVGLAFTSPENV---------EKLSP-LGVPVIGVPENYD-FDS-KRIEFPKFYELIKEDFD--- 188 (560)
T ss_pred cccCHHHHHHHHHhcCCEEEEECHHHH---------HHHHh-cCCcEEecCcccc-ccc-CccCcccHHHHhhcCCc---
Confidence 999999999999999999999987432 11111 1112222211000 000 00112345554433221
Q ss_pred CCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhch----hcCC-CCCCEEEEeCCccccchh-HHHHHH
Q 005501 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDL-KVGDVYCWPTNLGWVMGP-VILFSS 418 (693)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~-~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (693)
........++++++|+|||||||.||||+++|+++...+..... .+.. ..+++++..+|++|.+++ ..++.+
T Consensus 189 --~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~ 266 (560)
T PLN02574 189 --FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGL 266 (560)
T ss_pred --ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHH
Confidence 11122345789999999999999999999999998876654432 2222 356788999999999987 456678
Q ss_pred HHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcC-CCCCCccccEEEeecCCCCcchHHHHHhhCCC
Q 005501 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL-EGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497 (693)
Q Consensus 419 L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~-~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~ 497 (693)
+..|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.... ...++++||.+++||++++++..+++.+.+++
T Consensus 267 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~ 345 (560)
T PLN02574 267 LSLGSTIVVMR-RFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPH 345 (560)
T ss_pred HhcCCEEEEec-CCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHHHHHHHHHHCCC
Confidence 88999999886 46789999999999999999999999999876432 34568899999999999999999998888878
Q ss_pred CceecccccccccceeccCCc-CCCCccCccCCCCCCceEEEEC-CCCCCCCCCCCceeeEEE-----ecccCCCccccc
Q 005501 498 NAIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLL 570 (693)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~ild-~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~ 570 (693)
+.+++.||+||++...+.... ......+++|+|+++++++|+| ++|+++|.|+. |||++ ..||++
T Consensus 346 ~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~--Gei~v~g~~~~~GY~~------ 417 (560)
T PLN02574 346 VDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNC--GELWIQGPGVMKGYLN------ 417 (560)
T ss_pred CcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCC--eEEEEECcchhhhhcC------
Confidence 899999999999865433222 2224457899999999999999 68999999995 99999 456766
Q ss_pred ccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCC
Q 005501 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 650 (693)
Q Consensus 571 ~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~ 650 (693)
+++.|++.|.. ++||+|||+|++++||+++++||+||+||++|++|++.|||++|. .||+|.+++|++++++.
T Consensus 418 ~~~~t~~~~~~------~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~V~~~~v~~~~~~~ 490 (560)
T PLN02574 418 NPKATQSTIDK------DGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLI-SHPEIIDAAVTAVPDKE 490 (560)
T ss_pred ChhHhhhhccC------CCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHH-hCCCcceEEEEccccCC
Confidence 55567666643 239999999999999999999999999999999999999999996 99999999999999887
Q ss_pred CCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 651 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 651 ~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
.+ +.+++||+.+++...+.++++++++++|+.|+.|..+++
T Consensus 491 ~g-~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~v~~ 531 (560)
T PLN02574 491 CG-EIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRKVVF 531 (560)
T ss_pred CC-cceEEEEEeCCCCCCCHHHHHHHHHHhccCcccCcEEEE
Confidence 77 889999998877667778999999999999999987654
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-62 Score=549.16 Aligned_cols=464 Identities=20% Similarity=0.234 Sum_probs=378.7
Q ss_pred CCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 005501 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (693)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p 265 (693)
+++|+++|+++.+.+ +++||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++|
T Consensus 34 ~~~~~~~a~~~~~~~------~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 107 (537)
T PLN02246 34 SEFSDRPCLIDGATG------RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANP 107 (537)
T ss_pred HhCCCCeEEEecCCC------ceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcCEEEecCCC
Confidence 578999999875321 2899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCC
Q 005501 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (693)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (693)
.++.+++..++++++++++|+++... ..+..+.......++.++... .....+.++......
T Consensus 108 ~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~---- 169 (537)
T PLN02246 108 FYTPAEIAKQAKASGAKLIITQSCYV------DKLKGLAEDDGVTVVTIDDPP--------EGCLHFSELTQADEN---- 169 (537)
T ss_pred CCCHHHHHHHHHhcCCcEEEEccchH------HHHHHHhhcCCceEEEeCCCC--------CCceeHHHHhcCCCC----
Confidence 99999999999999999999987532 111122111111222222110 122334444332211
Q ss_pred CCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhch----hcCCCCCCEEEEeCCccccchh-HHHHHHHH
Q 005501 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----HIDLKVGDVYCWPTNLGWVMGP-VILFSSFL 420 (693)
Q Consensus 346 ~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~ 420 (693)
..+.....+++++|++|||||||.||||+++|+++.+.+.+... .++++++|+++..+|++|++++ ..++.++.
T Consensus 170 -~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~ 248 (537)
T PLN02246 170 -ELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLR 248 (537)
T ss_pred -CCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHh
Confidence 11223346799999999999999999999999999877654432 5678999999999999999987 45778899
Q ss_pred cCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCce
Q 005501 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (693)
Q Consensus 421 ~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (693)
.|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||+++++++.+++.++++++.+
T Consensus 249 ~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 327 (537)
T PLN02246 249 VGAAILIMP-KFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVL 327 (537)
T ss_pred cCCEEEEeC-CCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHHHHHHcCCCeE
Confidence 999999987 4678899999999999999999999999987654445567899999999999999999999998888889
Q ss_pred ecccccccccceeccCCc----CCCCccCccCCCCCCceEEEEC-CCCCCCCCCCCceeeEEE-----ecccCCCccccc
Q 005501 501 IESCGGTELSSAYIQGSL----LQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLL 570 (693)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~~~ild-~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~ 570 (693)
++.||+||++.+++.... ......+++|+|+++++++|+| ++++++|.|+. |||++ +.||++
T Consensus 328 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--Gel~v~g~~~~~GY~~------ 399 (537)
T PLN02246 328 GQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQP--GEICIRGPQIMKGYLN------ 399 (537)
T ss_pred eccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCc--eEEEEECCchhccccC------
Confidence 999999999865433211 1123346799999999999999 57899999985 99998 456766
Q ss_pred ccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCC
Q 005501 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 650 (693)
Q Consensus 571 ~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~ 650 (693)
+++.++.+|.. ++||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. .||+|.+|+|++.++..
T Consensus 400 ~~~~~~~~~~~------~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~-~~~~v~~~~v~~~~~~~ 472 (537)
T PLN02246 400 DPEATANTIDK------DGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-SHPSIADAAVVPMKDEV 472 (537)
T ss_pred CchhhhhcccC------CCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHH-hCCCeeEEEEEcccCcc
Confidence 44456655542 349999999999999999999999999999999999999999995 99999999999998887
Q ss_pred CCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 651 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 651 ~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
.+ +.++++++..++...+.++++++|+++|+.|+.|..++.
T Consensus 473 ~~-~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~ 513 (537)
T PLN02246 473 AG-EVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRIHKVFF 513 (537)
T ss_pred CC-ceeEEEEEeCCCCCCCHHHHHHHHHhhCcCccccceEEE
Confidence 77 899999999877667778999999999999999987754
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-63 Score=565.56 Aligned_cols=444 Identities=16% Similarity=0.165 Sum_probs=339.0
Q ss_pred cCCCCCCcEEEEEecC-CCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 005501 185 HRRKEDNTVAIVWRED-RCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~-~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vp 262 (693)
+++++||++|+.+.+. .+..+.+..+||+||+++++++|++|+++ +++||+|+|+++|+++|++++|||+++|+++||
T Consensus 54 ~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~~~~Gav~vp 133 (666)
T PLN02614 54 SVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEACNAHGLYCVP 133 (666)
T ss_pred HHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEE
Confidence 3478999999986421 00112345689999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCC------CceEEEcCCCCCCC---CCCCCCcccHH
Q 005501 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP------LKAIVLPAIGNDVG---IPLREQDLSWK 333 (693)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~~~ 333 (693)
+++.++.+++.+++++++++++|+++... ..+....+ ..++.+........ ........+++
T Consensus 134 l~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 204 (666)
T PLN02614 134 LYDTLGAGAVEFIISHSEVSIVFVEEKKI---------SELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWD 204 (666)
T ss_pred ecCCCCHHHHHHHHhccCCCEEEECHHHH---------HHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHH
Confidence 99999999999999999999999986421 11211111 12222321100000 00001124566
Q ss_pred HHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhc-----CCCCCCEEEEeCCccc
Q 005501 334 DFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-----DLKVGDVYCWPTNLGW 408 (693)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~~~~~ 408 (693)
++....... ........++|+|+|+|||||||.||||++||+++++.+.+....+ +++++|++++++|++|
T Consensus 205 ~~~~~~~~~----~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H 280 (666)
T PLN02614 205 EFLKLGEGK----QYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAH 280 (666)
T ss_pred HHHhhcccC----CCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccHHH
Confidence 665432210 0111223579999999999999999999999999988776544332 5788999999999999
Q ss_pred cchhHHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcC-----------------------
Q 005501 409 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL----------------------- 465 (693)
Q Consensus 409 ~~~~~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~----------------------- 465 (693)
.++....+.+++.|+++++.+ .++..+++.|+++++|++.++|++++.+......
T Consensus 281 ~~~~~~~~~~l~~G~~v~~~~--~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 358 (666)
T PLN02614 281 IFDRVIEECFIQHGAAIGFWR--GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGN 358 (666)
T ss_pred HHHHHHHHHHHHhCCEEEEeC--CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 988755667788999998875 3678999999999999999999999987642100
Q ss_pred --------CCC-------------CC-ccccEEEeecCCCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCc
Q 005501 466 --------EGL-------------DW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA 523 (693)
Q Consensus 466 --------~~~-------------~l-~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 523 (693)
... .+ ++||.+++||+++++.+ ..+...+++++++|+||+||+++..+...+.....
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~ 437 (666)
T PLN02614 359 MKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDM 437 (666)
T ss_pred HHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeeeccccCCc
Confidence 000 01 58999999999999865 45555665689999999999976443333322234
Q ss_pred cCccCCCCCCceEEEEC-CC--CCCCCCCCCceeeEEE-----ecccCCCcccccccccccccccccccCCCceeeeecc
Q 005501 524 FGAFSTATMTAGLVILD-EC--GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGD 595 (693)
Q Consensus 524 ~~~iG~p~~~~~~~ild-~~--~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGD 595 (693)
.+++|+|+||++++|+| ++ +++++.|+. |||+| +.||++ +++.|++.|. + | ||+|||
T Consensus 438 ~gsvG~p~pg~evki~d~~~~~~~~~~~g~~--GEl~vrGp~v~~GY~~------~pe~T~~~f~-d----G--w~~TGD 502 (666)
T PLN02614 438 LGTVGPPVPNVDIRLESVPEMEYDALASTPR--GEICIRGKTLFSGYYK------REDLTKEVLI-D----G--WLHTGD 502 (666)
T ss_pred CCcccCcCCceEEEEeeecccCcccCCCCCC--ceEEEcCCcccccccC------CHHHhhhhhc-c----C--Ccccce
Confidence 67999999999999998 33 478899985 99998 457776 5668888884 1 3 999999
Q ss_pred eEEEecCCcEEEEeecCCcccc-CCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecC
Q 005501 596 IIKRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 664 (693)
Q Consensus 596 l~~~~~dG~l~~~GR~dd~ik~-~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~ 664 (693)
+|++|+||+|+|+||+||+||+ +|++|+|.|||++|. +||+|.+|+|++.... ..++|+|+++.
T Consensus 503 lg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~-~~p~V~~~~V~g~~~~----~~l~alvv~~~ 567 (666)
T PLN02614 503 VGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYG-EVQAVDSVWVYGNSFE----SFLVAIANPNQ 567 (666)
T ss_pred EEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHh-cCCCeeEEEEEecCCc----ceEEEEEeCCH
Confidence 9999999999999999999996 699999999999995 9999999999985421 57999999864
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-62 Score=550.55 Aligned_cols=471 Identities=20% Similarity=0.215 Sum_probs=375.7
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
++++|+++|+++.++ .+||+||.++++++|++|.+ . +++||+|+++++|++++++++|||+++|++++|+
T Consensus 34 a~~~p~~~al~~~~~--------~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~Ga~~v~l 105 (562)
T PRK05677 34 CQRFADKPAFSNLGK--------TLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVVNT 105 (562)
T ss_pred HHhCCCCeeEEECCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEeec
Confidence 467999999998765 99999999999999999997 6 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCC-------------------CC
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG-------------------IP 324 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~ 324 (693)
+|.++.+++..++++++++++|++..... ...++......+.+++........ ..
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (562)
T PRK05677 106 NPLYTAREMEHQFNDSGAKALVCLANMAH------LAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAY 179 (562)
T ss_pred CCCCCHHHHHHHHhccCceEEEEecchhh------hHHHhhhccCcceeEEecccccccchhhhhcccchhhcccccccc
Confidence 99999999999999999999999764321 111211111111122211000000 00
Q ss_pred CCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcC--CCC-CCEEE
Q 005501 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID--LKV-GDVYC 401 (693)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~-~d~~l 401 (693)
...+...+.+.+..... .........++++++|+|||||||+||||+++|+++...+......+. +.. .++++
T Consensus 180 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 255 (562)
T PRK05677 180 HLPQAVKFNDALAKGAG----QPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILI 255 (562)
T ss_pred CCcccccHHHHHhcCCC----CCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEE
Confidence 00112234444332221 111122346799999999999999999999999999776655444333 333 36788
Q ss_pred EeCCccccchh-HHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeec
Q 005501 402 WPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480 (693)
Q Consensus 402 ~~~~~~~~~~~-~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG 480 (693)
+..|+.|..++ +.++.++..|++.++.+...++..+++.|+++++|.+..+|+++..+.........+++++|.+++||
T Consensus 256 ~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG 335 (562)
T PRK05677 256 APLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGG 335 (562)
T ss_pred EcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcC
Confidence 89999999887 56778888999888877556788999999999999999999999999876544445578999999999
Q ss_pred CCCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE--
Q 005501 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-- 558 (693)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-- 558 (693)
+++++++.+++.+.+ ++++++.||+||++.+...... .....+++|+|+++++++|+|++++++|.|+. |||++
T Consensus 336 ~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~-~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~--Gel~v~g 411 (562)
T PRK05677 336 MALQLATAERWKEVT-GCAICEGYGMTETSPVVSVNPS-QAIQVGTIGIPVPSTLCKVIDDDGNELPLGEV--GELCVKG 411 (562)
T ss_pred ccCCHHHHHHHHHHc-CCCeeccCCccccCcceeecCc-cCCCCCccCccCCCCEEEEECCCCCCCCCCCC--eEEEEec
Confidence 999999988888765 6899999999998865543332 23345789999999999999999999999985 99998
Q ss_pred ---ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccC
Q 005501 559 ---FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD 635 (693)
Q Consensus 559 ---~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~ 635 (693)
.+||++ +++.|++.|..+ +||+|||+|++++||+++|.||+||+||++|++|+|.|||++|. .|
T Consensus 412 ~~~~~gY~~------~~~~t~~~~~~~------g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~-~~ 478 (562)
T PRK05677 412 PQVMKGYWQ------RPEATDEILDSD------GWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLA-AL 478 (562)
T ss_pred CccchhhcC------CchhhhhccCCC------CcccccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHH-hC
Confidence 457776 555777777532 39999999999999999999999999999999999999999995 99
Q ss_pred cccceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 636 ESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 636 p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
|+|.+++|++++++..+ +.+++||+++++...+.++++++++++|+.|++|..++.
T Consensus 479 ~~v~~~~v~g~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~ 534 (562)
T PRK05677 479 PGVLQCAAIGVPDEKSG-EAIKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVEF 534 (562)
T ss_pred CCccEEEEEeccCccCC-ceEEEEEEeCCCCCCCHHHHHHHHHHhhhhccCCcEEEE
Confidence 99999999999988777 899999998877667889999999999999999998875
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-63 Score=567.63 Aligned_cols=448 Identities=17% Similarity=0.136 Sum_probs=345.5
Q ss_pred CCCCCCcEEEEEec-CCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 186 RRKEDNTVAIVWRE-DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 186 a~~~pd~~Al~~~~-~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
++++|+++|+.+.. ..+..+.++.+||+||.++++++|++|+++ +++||+|+|+++|+++|++++|||+++|+++||+
T Consensus 54 a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl 133 (651)
T PLN02736 54 VETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPL 133 (651)
T ss_pred HHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEe
Confidence 47899999996421 111223456799999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC-c-eEEEcCCCCCC-C--CCCCCCcccHHHHhcc
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-K-AIVLPAIGNDV-G--IPLREQDLSWKDFLSS 338 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~ 338 (693)
++.++.+++.+++++++++++|++.... +.+.......+. . ++++....... . ........+|+++...
T Consensus 134 ~~~~~~~~l~~il~~~~~~~l~~~~~~~------~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (651)
T PLN02736 134 YDTLGPDAVKFIVNHAEVAAIFCVPQTL------NTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQ 207 (651)
T ss_pred ecCCCHHHHHHHHhccCCCEEEECHHHH------HHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHh
Confidence 9999999999999999999999986432 112222222222 1 22221110000 0 0001123467776654
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHH
Q 005501 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (693)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 418 (693)
.... ........++|+|+|+|||||||.||||++||+++...+.+....+++.++|++++++|++|+++.+.++.+
T Consensus 208 ~~~~----~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~ 283 (651)
T PLN02736 208 GRSS----PQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAHIYERVNQIVM 283 (651)
T ss_pred cccC----CCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhccCCCCCCEEEEeCCHHHHHHHHHHHHH
Confidence 3220 111223467999999999999999999999999999888888778889999999999999999999888899
Q ss_pred HHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCc-----------------------------CCCC-
Q 005501 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC-----------------------------LEGL- 468 (693)
Q Consensus 419 L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~-----------------------------~~~~- 468 (693)
|+.|+++++.+. ++..+++.|+++++|++..+|++++.+.+... ....
T Consensus 284 l~~G~~i~~~~~--~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (651)
T PLN02736 284 LHYGVAVGFYQG--DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPM 361 (651)
T ss_pred HHcCCEEEEeCC--CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCch
Confidence 999999998764 56789999999999999999999988754310 0000
Q ss_pred -----------CC-ccccEEEeecCCCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCccCccCCCCCCceE
Q 005501 469 -----------DW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGL 536 (693)
Q Consensus 469 -----------~l-~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~ 536 (693)
.+ +++|.+++||+++++++.+++...+ ++++++.||+||+++..+.... .....+++|+|+||+++
T Consensus 362 ~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~~-~~~~~~~vG~p~pg~~v 439 (651)
T PLN02736 362 WDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICF-GGRVLEGYGMTETSCVISGMDE-GDNLSGHVGSPNPACEV 439 (651)
T ss_pred HHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHh-CCCeEEEechHHhchheeccCC-CCCCCCccCCccCceEE
Confidence 01 4799999999999999999887665 5789999999999865443332 23456789999999999
Q ss_pred EEECC-CCCCCCCCCCc-eeeEEE-----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEe
Q 005501 537 VILDE-CGVPYPDDQPC-VGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQG 609 (693)
Q Consensus 537 ~ild~-~~~~~p~G~~g-iGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~G 609 (693)
+|+|. ++.....+.++ .|||++ +.||++ +++.|++.|..+ +||+|||+|++|+||+|+|+|
T Consensus 440 ~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~------~~~~t~~~~~~d------gw~~TGDlg~~d~dG~l~i~G 507 (651)
T PLN02736 440 KLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYK------DEVQTREVIDED------GWLHTGDIGLWLPGGRLKIID 507 (651)
T ss_pred EEEEccccCcccCCCCCCCceEEecCCcccccccc------CHHHHHhhhccC------CCeeccceEEEcCCCcEEEEE
Confidence 99983 32211111111 489988 567776 556787777532 399999999999999999999
Q ss_pred ecCCcccc-CCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecC
Q 005501 610 RADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 664 (693)
Q Consensus 610 R~dd~ik~-~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~ 664 (693)
|+||+||+ +|++|+|.|||++|. .||+|.+|+|++. ..+ +.++|+||+++
T Consensus 508 R~kd~ik~~~G~~V~p~eIE~~l~-~~p~V~~a~V~g~---~~~-~~~~A~vv~~~ 558 (651)
T PLN02736 508 RKKNIFKLAQGEYIAPEKIENVYA-KCKFVAQCFVYGD---SLN-SSLVAVVVVDP 558 (651)
T ss_pred echhheEcCCCcEechHHHHHHHh-cCCCeeEEEEEec---CCC-ceeEEEEEeCH
Confidence 99999997 699999999999995 9999999999982 234 79999999875
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-62 Score=548.60 Aligned_cols=472 Identities=20% Similarity=0.219 Sum_probs=384.8
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
++++|+++|+++.+. ++||+||.++++++|..|.+. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 20 a~~~~~~~a~~~~~~--------~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 91 (546)
T PRK08314 20 ARRYPDKTAIVFYGR--------AISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPV 91 (546)
T ss_pred HHHcCCCcceeecCc--------eecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHHcCcEEeec
Confidence 468999999998877 999999999999999999986 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCc-eEEEcCCCC---CCC--------------CCC
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGN---DVG--------------IPL 325 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~--------------~~~ 325 (693)
+|..+.+++..+++++++++++++..... .+.......... +++...... ... ...
T Consensus 92 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (546)
T PRK08314 92 NPMNREEELAHYVTDSGARVAIVGSELAP------KVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALA 165 (546)
T ss_pred CcCcCHHHHHHHHHhCCCeEEEEccchhh------hHHHHhhccCcceEEEecchhhcccccccCccccccccccccccc
Confidence 99999999999999999999999875321 111111111111 111110000 000 000
Q ss_pred CCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCC
Q 005501 326 REQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTN 405 (693)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~ 405 (693)
..+...|++....... .......++++|+|+|||||||.||||+++|+++++.+......+++..+|++++..|
T Consensus 166 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p 239 (546)
T PRK08314 166 PGGVVAWKEALAAGLA------PPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWSNSTPESVVLAVLP 239 (546)
T ss_pred ccccccHHHHhcccCC------CCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCceEEEEcC
Confidence 1123456655443211 1223346789999999999999999999999999998888777888999999999999
Q ss_pred ccccchh-HHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCC
Q 005501 406 LGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSN 484 (693)
Q Consensus 406 ~~~~~~~-~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~ 484 (693)
++|..++ +.++.++.+|+++++.+ ..++..++++++++++|++.++|+++..++........+++++|.+++||++++
T Consensus 240 ~~~~~g~~~~~~~~l~~G~~i~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~ 318 (546)
T PRK08314 240 LFHVTGMVHSMNAPIYAGATVVLMP-RWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMP 318 (546)
T ss_pred chHHHHHHHHHHHHHHcCCeEEecC-CCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCC
Confidence 9999987 66789999999999987 457889999999999999999999999998765445566789999999999999
Q ss_pred cchHHHHHhhCCCCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECC-CCCCCCCCCCceeeEEE-----
Q 005501 485 VDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGL----- 558 (693)
Q Consensus 485 ~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~-~~~~~p~G~~giGel~v----- 558 (693)
+++.+++.+.+ +.++++.||+||++......... .....++|+|++|++++|+|+ ++++++.|.. |||++
T Consensus 319 ~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~--Gel~v~g~~~ 394 (546)
T PRK08314 319 EAVAERLKELT-GLDYVEGYGLTETMAQTHSNPPD-RPKLQCLGIPTFGVDARVIDPETLEELPPGEV--GEIVVHGPQV 394 (546)
T ss_pred HHHHHHHHHHc-CCcEEecccccccccceecCCCc-CCCCCccCcccCCeEEEEEeCCCCcCCCCCCc--eEEEEECCch
Confidence 99999988776 57899999999998654433222 234568999999999999994 6899999984 99998
Q ss_pred ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCccc
Q 005501 559 FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 638 (693)
Q Consensus 559 ~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V 638 (693)
..||++ +++.|++.|..+ +|.+||+|||+|++++||++++.||+||+||++|++|+|.|||++|. ++|+|
T Consensus 395 ~~gY~~------~~~~t~~~f~~~---~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~-~~~~v 464 (546)
T PRK08314 395 FKGYWN------RPEATAEAFIEI---DGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLY-KHPAI 464 (546)
T ss_pred hccccC------ChhHhhhhhhhc---CCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHH-hCcch
Confidence 456666 444666666543 35669999999999999999999999999999999999999999995 99999
Q ss_pred ceeEEEeecCCCCCceEEEEEEEecCCC--CCChHHHHHHHHHHHHhhcCCCceecC
Q 005501 639 LETAAISVSPAGGGPEVLVIFVVLKKGF--TSQPDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 639 ~~a~Vv~~~~~~~g~~~l~a~vv~~~~~--~~~~~~l~~~l~~~L~~~m~P~~~v~~ 693 (693)
.+++|++.++...+ +.+++||+++++. ..+.++++++++++|+.|++|..++.+
T Consensus 465 ~~~~v~~~~~~~~~-~~~~a~v~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v 520 (546)
T PRK08314 465 QEACVIATPDPRRG-ETVKAVVVLRPEARGKTTEEEIIAWAREHMAAYKYPRIVEFV 520 (546)
T ss_pred heEEEEeCCCcccC-ceeEEEEEECCCCCCCCCHHHHHHHHHHhcccCCCCcEEEEe
Confidence 99999999988777 8999999998753 345689999999999999999988753
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-61 Score=540.74 Aligned_cols=468 Identities=24% Similarity=0.270 Sum_probs=387.5
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++.+|+++|+++.+. ++||+||.+++.++|+.|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 15 ~~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~ 86 (513)
T PRK07656 15 ARRFGDKEAYVFGDQ--------RLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLN 86 (513)
T ss_pred HHHCCCCeEEEeCCC--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecC
Confidence 468999999999776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCCCCCCCCCcccHHHHhcccCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (693)
+.++.+++..++++++++++++++... ..........+. .++........ .......+|+++......
T Consensus 87 ~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~- 156 (513)
T PRK07656 87 TRYTADEAAYILARGDAKALFVLGLFL------GVDYSATTRLPALEHVVICETEEDD---PHTEKMKTFTDFLAAGDP- 156 (513)
T ss_pred cccCHHHHHHHHhhcCceEEEEchhhH------HHHHHHHhccCCccEEEEEcCcccc---cCccccccHHHHHhcCCC-
Confidence 999999999999999999999987532 111111112211 12222211110 001123456766543221
Q ss_pred CCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchh-HHHHHHHHc
Q 005501 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLN 421 (693)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~ 421 (693)
........++++++|+|||||||.||+|.++|+++.+.+......++++++|++++.+|+.|++++ ..++.++..
T Consensus 157 ----~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (513)
T PRK07656 157 ----AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMR 232 (513)
T ss_pred ----CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHc
Confidence 112234567899999999999999999999999999888888788899999999999999999987 458899999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCcee
Q 005501 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (693)
Q Consensus 422 G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (693)
|+++++.+ ..++..+++.|+++++|++.++|+++..|.+........++++|.+++||+++++++.+++.+.++...++
T Consensus 233 G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~ 311 (513)
T PRK07656 233 GATILPLP-VFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGVDIVL 311 (513)
T ss_pred CceEEecC-cCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcCCCceE
Confidence 99998865 46788999999999999999999999999987655556788999999999999999999998877533899
Q ss_pred cccccccccceeccCCcCCCCc--cCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCccccccccc
Q 005501 502 ESCGGTELSSAYIQGSLLQPQA--FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADH 574 (693)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~--~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~ 574 (693)
|.||+||+++..+.+....... .+++|+|+++++++|+|+++++++.|.. |||++ ..||++ ++..
T Consensus 312 ~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~------~~~~ 383 (513)
T PRK07656 312 TGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEV--GELLVRGPNVMKGYYD------DPEA 383 (513)
T ss_pred eEEccccCCCceeecCccccccccCCCccccCCCcEEEEECCCCCCCCCCCc--eEEEEEcchhhhhhcC------CHHH
Confidence 9999999987665554332222 5789999999999999999999999985 99998 456766 3335
Q ss_pred ccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCce
Q 005501 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (693)
Q Consensus 575 t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~ 654 (693)
+...|.. +.||+|||+|++++||+++++||.||+||++|.+|+|.|||++|. ++|+|.+++|++.+++..| +
T Consensus 384 ~~~~~~~------~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~i~~~~v~~~~~~~~g-~ 455 (513)
T PRK07656 384 TAAAIDA------DGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLY-EHPAVAEAAVIGVPDERLG-E 455 (513)
T ss_pred Hhhhhcc------CCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHH-hCCCeeEEEEEecCCcccC-c
Confidence 5555532 239999999999999999999999999999999999999999995 9999999999999888777 8
Q ss_pred EEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 655 VLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
.+++||+.+++...+.++++++++++||.+++|..++.
T Consensus 456 ~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 493 (513)
T PRK07656 456 VGKAYVVLKPGAELTEEELIAYCREHLAKYKVPRSIEF 493 (513)
T ss_pred eEEEEEEECCCCCCCHHHHHHHHHhhcccccCCCEEEE
Confidence 99999999876667888999999999999999988764
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-61 Score=537.89 Aligned_cols=472 Identities=21% Similarity=0.227 Sum_probs=389.0
Q ss_pred CCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 005501 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (693)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p 265 (693)
+++|+++|+.+.++ ++||+||.++++++|++|++. +++|++|+++++|++++++++|||+++|++++|+++
T Consensus 11 ~~~p~~~a~~~~~~--------~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~ 82 (515)
T TIGR03098 11 ARLPDATALVHHDR--------TLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINP 82 (515)
T ss_pred HHCCCCeEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEEEEeCCC
Confidence 67999999998776 999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCC
Q 005501 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (693)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (693)
..+.+++..+++++++++++++.... ..+.......+. .++.+...... .........|+++......
T Consensus 83 ~~~~~~~~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-- 152 (515)
T TIGR03098 83 LLKAEQVAHILADCNVRLLVTSSERL------DLLHPALPGCHDLRTLILVGEPAHA--SEGGGESPSWPKLLALGDA-- 152 (515)
T ss_pred CCCHHHHHHHHHcCCCeEEEEccchh------hhhHhhhhcccccceEEEecCcccc--cCCccccccHHHhhccccc--
Confidence 99999999999999999999986432 111111111111 22233221110 0011233456665443221
Q ss_pred CCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHcCC
Q 005501 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (693)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~ 423 (693)
........+++++|+|||||||.||||+++|+++...+......+++..+|++++..|++|++++..++.++..|+
T Consensus 153 ----~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 228 (515)
T TIGR03098 153 ----DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGA 228 (515)
T ss_pred ----cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHhCCCcccEEEEECchhhHhHHHHHHHHHHcCC
Confidence 1222345689999999999999999999999999888887777788999999999999999999988999999999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceecc
Q 005501 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (693)
Q Consensus 424 ~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (693)
++++.+ ..+++.+++.++++++|++.++|+++..|.+... ...+++++|.+++||+++++.+.+.+.+.++++.+++.
T Consensus 229 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~ 306 (515)
T TIGR03098 229 TVVLHD-YLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLM 306 (515)
T ss_pred EEEEcC-CCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeee
Confidence 999886 4678999999999999999999999999987532 22356899999999999999999999988878899999
Q ss_pred cccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCccccccccccccc
Q 005501 504 CGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVY 578 (693)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~ 578 (693)
||+||++..............+++|+|++|++++|+|+++++++.|+. ||+++ ..||++ +++.+++.
T Consensus 307 YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~~--Gel~v~g~~~~~gy~~------~~~~~~~~ 378 (515)
T TIGR03098 307 YGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLREDGSECAPGEE--GELVHRGALVAMGYWN------DPEKTAER 378 (515)
T ss_pred eccccccceEecccccccCCCCCcceecCCCEEEEECCCCCCCCCCCc--eEEEEcCchhhccccC------Cchhhhhh
Confidence 999999764433222223456789999999999999999999999985 99998 567777 44466667
Q ss_pred cccccc-----CCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCc
Q 005501 579 FRGMPM-----YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (693)
Q Consensus 579 f~~~p~-----~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~ 653 (693)
|.+.+. ..+.+||+|||+|++++||++++.||.||+||++|.+|+|.|||++|. .||.|.+|+|++++++..|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g- 456 (515)
T TIGR03098 379 FRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAY-ATGLVAEAVAFGVPDPTLG- 456 (515)
T ss_pred hhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHh-cCCCeeEEEEEeccCcccC-
Confidence 765432 223468999999999999999999999999999999999999999996 9999999999999988877
Q ss_pred eEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
+.++++++..++...+..+++++++++|+.++.|..++.
T Consensus 457 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~ 495 (515)
T TIGR03098 457 QAIVLVVTPPGGEELDRAALLAECRARLPNYMVPALIHV 495 (515)
T ss_pred ceEEEEEEeCCCCCCCHHHHHHHHHhhCccccCCCEEEE
Confidence 899999997766667888999999999999999998775
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-61 Score=534.66 Aligned_cols=453 Identities=20% Similarity=0.211 Sum_probs=375.0
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vp 262 (693)
+|+.+||++|+++.+. .+||+||.++++++|++|++ . +++|++|+++++|++++++++|||+++|++++|
T Consensus 11 ~a~~~p~~~a~~~~~~--------~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~ 82 (496)
T PRK06839 11 RAYLHPDRIAIITEEE--------EMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVP 82 (496)
T ss_pred HHHHCCCCeEEEECCc--------eEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEe
Confidence 3478999999998766 99999999999999999986 5 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCC-CceEEEcCCCCCCCCCCCCCcccHHHHhcccCC
Q 005501 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (693)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (693)
+++.++.+++..++++++++++++++... +....+..... ...+.+. ++.++......
T Consensus 83 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~ 141 (496)
T PRK06839 83 LNIRLTENELIFQLKDSGTTVLFVEKTFQ------NMALSMQKVSYVQRVISIT---------------SLKEIEDRKID 141 (496)
T ss_pred cCcccCHHHHHHHHHhcCceEEEEcHHHH------HHHHHhhhccCcceEEEec---------------chHhhhccCCC
Confidence 99999999999999999999999987532 11111111111 1111111 12222221111
Q ss_pred CCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchh-HHHHHHHH
Q 005501 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFL 420 (693)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~ 420 (693)
......++++++|+|||||||.||+|+++|+++..........++++.+|+++...|+.|..++ +.++.++.
T Consensus 142 -------~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~ 214 (496)
T PRK06839 142 -------NFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLF 214 (496)
T ss_pred -------CCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHh
Confidence 1123456899999999999999999999999987666666667788999999999999999887 45678899
Q ss_pred cCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCce
Q 005501 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (693)
Q Consensus 421 ~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (693)
.|+++++.+ ..++..+++.++++++|++.++|++++.|+........+++++|.+++||+++++.+.+++.+. ++++
T Consensus 215 ~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~ 291 (496)
T PRK06839 215 AGGVIIVPR-KFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR--GFLF 291 (496)
T ss_pred cCcEEEEcc-CCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh--CCee
Confidence 999998865 5688999999999999999999999999998765555678899999999999999999888775 6899
Q ss_pred ecccccccccceeccCCc-CCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCccccccccc
Q 005501 501 IESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADH 574 (693)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~ 574 (693)
.+.||+||++...+.... ......+++|+|+++++++|+|+++++++.|+. |||+| .+||++ +++.
T Consensus 292 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~------~~~~ 363 (496)
T PRK06839 292 GQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEV--GELLIRGPNVMKEYWN------RPDA 363 (496)
T ss_pred EeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECCCcCCCCCCCc--eEEEEECCCcchhhcC------ChHH
Confidence 999999999864433322 223456789999999999999999999999985 99998 356665 3345
Q ss_pred ccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCce
Q 005501 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (693)
Q Consensus 575 t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~ 654 (693)
++..|. +| ||+|||++++++||++++.||.||+||++|.+|+|.|||++|. .+|+|.+|+|++.+++..+ +
T Consensus 364 ~~~~~~-----~g--~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~-~~~~v~~~~v~~~~~~~~g-~ 434 (496)
T PRK06839 364 TEETIQ-----DG--WLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVIN-KLSDVYEVAVVGRQHVKWG-E 434 (496)
T ss_pred HHHHHc-----CC--CeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccccccC-c
Confidence 544442 23 9999999999999999999999999999999999999999996 9999999999999988877 8
Q ss_pred EEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceecC
Q 005501 655 VLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~~ 693 (693)
.++++|+++++...+.++++++++++|+.+++|..++.+
T Consensus 435 ~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~v 473 (496)
T PRK06839 435 IPIAFIVKKSSSVLIEKDVIEHCRLFLAKYKIPKEIVFL 473 (496)
T ss_pred eEEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCcEEEEe
Confidence 999999998877777789999999999999999988753
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-61 Score=553.03 Aligned_cols=467 Identities=17% Similarity=0.173 Sum_probs=362.4
Q ss_pred CCCCCCcEEEEEecCC-CCCCcceeecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec-
Q 005501 186 RRKEDNTVAIVWREDR-CDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI- 263 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl- 263 (693)
++.+|+++|+++.+.. ...+..+.+||+||.++++++|++|.+.+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 31 a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~~~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~ 110 (631)
T PRK07769 31 AKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQVTKPGDRVAILAPQNLDYLIAFFGALYAGRIAVPLF 110 (631)
T ss_pred HHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEeeC
Confidence 3678999999975421 01123458999999999999999998669999999999999999999999999999999999
Q ss_pred CCCCC--HHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCC----CceEEEcCCCCCCCCCCCCCcccHHHHhc
Q 005501 264 ADSFA--AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (693)
Q Consensus 264 ~p~~~--~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (693)
++..+ .+++.+++++++++++|+++... +.........+ ..++.++... +..
T Consensus 111 ~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~- 168 (631)
T PRK07769 111 DPAEPGHVGRLHAVLDDCTPSAILTTTDSA------EGVRKFFRARPAKERPRVIAVDAVP---------------DEV- 168 (631)
T ss_pred CCCccchHHHHHHHHHhCCCCEEEEChHHH------HHHHHHHhhccccccceEEEccccc---------------ccc-
Confidence 56665 68999999999999999987532 11111111111 1111111000 000
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHH
Q 005501 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417 (693)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (693)
. .........++++++|+|||||||+||||+++|+++...+......+++.++|++++++|++|++++..++.
T Consensus 169 --~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~~~~~ 241 (631)
T PRK07769 169 --G-----ATWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGVSWLPFFHDMGLITVLL 241 (631)
T ss_pred --c-----cccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHcCCCCcceEEEeCCCcCchhhHHHHH
Confidence 0 001111345789999999999999999999999999888877777888999999999999999999988888
Q ss_pred HHHcCCEEEEecC-CC--ChhhHHHHHHHcCC---cEEeechHHHHHHHhcC---c--CCCCCCccccEEEeecCCCCcc
Q 005501 418 SFLNGATLALYQG-SP--LERSFGKFVQDAGV---TVLGTVPSLVKAWRNTN---C--LEGLDWTKIRSFASTGETSNVD 486 (693)
Q Consensus 418 ~L~~G~~lvi~~~-~~--~~~~~~~~i~~~~v---t~l~~~P~~l~~l~~~~---~--~~~~~l~~lr~v~~gGe~l~~~ 486 (693)
+++.|++++++++ .. ++..+++.++++++ +++..+|+++..+.... . ....++++||.+++||++++++
T Consensus 242 ~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~ 321 (631)
T PRK07769 242 PALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPA 321 (631)
T ss_pred HHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHH
Confidence 8899999998864 23 77889999999886 78999999887766431 1 1145688999999999999999
Q ss_pred hHHHHHhhCC-----CCceecccccccccceeccCCcCCC--------------------------CccCccCCCCCCce
Q 005501 487 DDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP--------------------------QAFGAFSTATMTAG 535 (693)
Q Consensus 487 ~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~--------------------------~~~~~iG~p~~~~~ 535 (693)
+.+++.+.+. ...++|.||+||++..++....... ....++|+|+++++
T Consensus 322 ~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~ 401 (631)
T PRK07769 322 SMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEW 401 (631)
T ss_pred HHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcE
Confidence 9988887652 2469999999999765443221110 01247899999999
Q ss_pred EEEEC-CCCCCCCCCCCceeeEEE-----ecccCCCccccccccccccccccccc-----------CCCceeeeecceEE
Q 005501 536 LVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPM-----------YKGMCLRRHGDIIK 598 (693)
Q Consensus 536 ~~ild-~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~-----------~~g~~~yrTGDl~~ 598 (693)
++|+| ++|+++|.|+ +|||++ +.||++ +++.|++.|...+. ..+.+||||||+|+
T Consensus 402 ~~ivd~~~g~~~~~ge--~GEl~v~gp~v~~GY~~------~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~ 473 (631)
T PRK07769 402 AVIVDPETASELPDGQ--IGEIWLHGNNIGTGYWG------KPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGV 473 (631)
T ss_pred EEEEcCCCCcCCCCCC--EEEEEecCCCccccccC------ChhHHHHHHhhhcccccccccccCcccCCCeeecccccc
Confidence 99999 5799999999 599998 467776 55578888864211 12346999999999
Q ss_pred EecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccce--eEEEeecC-------------------CCCCceEEE
Q 005501 599 RTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE--TAAISVSP-------------------AGGGPEVLV 657 (693)
Q Consensus 599 ~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~--a~Vv~~~~-------------------~~~g~~~l~ 657 (693)
++ ||+|+|+||.||+||++|+||+|.|||++|.+.||+|.+ ++|+++++ +..+ +.++
T Consensus 474 ~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~g-e~~~ 551 (631)
T PRK07769 474 YF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTS-EQLV 551 (631)
T ss_pred EE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCC-ccEE
Confidence 95 999999999999999999999999999999624899998 99999988 4456 8999
Q ss_pred EEEEecCCC-CCChHHHHHHHHHHHHh-hc-CCCcee
Q 005501 658 IFVVLKKGF-TSQPDKLKMIFSKAIQS-KL-NPLFKV 691 (693)
Q Consensus 658 a~vv~~~~~-~~~~~~l~~~l~~~L~~-~m-~P~~~v 691 (693)
++|+++++. ..+.++|+++++++|.. +. .|..+.
T Consensus 552 a~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~~~ 588 (631)
T PRK07769 552 IVAERAPGAHKLDPQPIADDIRAAIAVRHGVTVRDVL 588 (631)
T ss_pred EEEEecCccccccHHHHHHHHHHHHHHHcCCCccEEE
Confidence 999998763 56778999999999996 45 476543
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-61 Score=534.11 Aligned_cols=444 Identities=21% Similarity=0.226 Sum_probs=365.9
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
+|+++|+++|+++.+. ++||+||.++++++|++|.+...+|++|+|+++|++++++++|||+++|++++|++
T Consensus 10 ~a~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~ 81 (487)
T PRK07638 10 HASLQPNKIAIKENDR--------VLTYKDWFESVCKVANWLNEKESKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLD 81 (487)
T ss_pred HHHhCCCCeEEecCCc--------EeeHHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecC
Confidence 3478999999998776 99999999999999999998833799999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (693)
+.++.+++..++++++++++|++........ . ....++.+. .+.+.......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~---------~-~~~~~~~~~---------------~~~~~~~~~~~--- 133 (487)
T PRK07638 82 IKWKQDELKERLAISNADMIVTERYKLNDLP---------D-EEGRVIEID---------------EWKRMIEKYLP--- 133 (487)
T ss_pred ccCCHHHHHHHHHhCCCCEEEEecccccchh---------h-ccceEEEeh---------------hhhhhhhhccc---
Confidence 9999999999999999999999875321110 0 001111111 11111111110
Q ss_pred CCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHcCCE
Q 005501 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (693)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~ 424 (693)
.........+++++|+|||||||.||||+++|++++..+......++++++|+++...++.|+.+++.++.++..|++
T Consensus 134 --~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~ 211 (487)
T PRK07638 134 --TYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSLFLYGAISTLYVGQT 211 (487)
T ss_pred --cccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCcCCCCEEEEeecchHHHHHHHHHHHHccCcE
Confidence 011112235778999999999999999999999998888877778889999999999999999988888999999999
Q ss_pred EEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceeccc
Q 005501 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (693)
Q Consensus 425 lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (693)
+++.+ ..++..+++.|+++++|++.++|+++..|.+... . ..+.+.++++|++++.+..+++.+.+++++++|.|
T Consensus 212 ~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~-~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~Y 286 (487)
T PRK07638 212 VHLMR-KFIPNQVLDKLETENISVMYTVPTMLESLYKENR---V-IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFY 286 (487)
T ss_pred EEEcC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC---c-CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEe
Confidence 99886 5788999999999999999999999999987632 1 34556677889999999999999888889999999
Q ss_pred ccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccccccccc
Q 005501 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYF 579 (693)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f 579 (693)
|+||++..+............++|+|++|+.++|+|++|+++|.|+. |||++ ..||+++ ++.+.+.+
T Consensus 287 G~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--Gel~v~~~~~~~gy~~~------~~~~~~~~ 358 (487)
T PRK07638 287 GASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAGEEVQKGEI--GTVYVKSPQFFMGYIIG------GVLARELN 358 (487)
T ss_pred cCCccCceEEecccccCCCCCCCCcccCCcEEEEECCCCCCCCCCCC--eEEEEecccceeeecCC------HHHHhhhc
Confidence 99999876554443334456789999999999999999999999985 99998 3466553 22333322
Q ss_pred cccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEE
Q 005501 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659 (693)
Q Consensus 580 ~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~ 659 (693)
.++||+|||+|++++||+++++||+||+||++|++|+|.|||++|. +||+|.+|+|++.+++..| +.++++
T Consensus 359 -------~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~ 429 (487)
T PRK07638 359 -------ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLH-EHPAVDEIVVIGVPDSYWG-EKPVAI 429 (487)
T ss_pred -------cCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHH-hCCCeeeEEEEecCchhcC-CeeEEE
Confidence 2239999999999999999999999999999999999999999996 9999999999999988777 889998
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 660 VVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 660 vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
|+. ..+.++++++++++|+.|++|..++.
T Consensus 430 v~~----~~~~~~l~~~~~~~l~~~~~p~~i~~ 458 (487)
T PRK07638 430 IKG----SATKQQLKSFCLQRLSSFKIPKEWHF 458 (487)
T ss_pred EEC----CCCHHHHHHHHHHHhhcccCCcEEEE
Confidence 874 24568999999999999999988765
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-61 Score=543.75 Aligned_cols=464 Identities=15% Similarity=0.144 Sum_probs=361.6
Q ss_pred CCCCCCcEEEEEecCCC--CCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 005501 186 RRKEDNTVAIVWREDRC--DESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~--~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vp 262 (693)
++++|+++|+++.+.+. ....++++||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|
T Consensus 16 a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~~~~G~~~v~ 95 (552)
T PRK09274 16 AQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVL 95 (552)
T ss_pred HHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCeEEEE
Confidence 46799999999865411 011234799999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcC---CCceEEEcCCCCCCCCCCCCCcccHHHHhccc
Q 005501 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (693)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (693)
++|.++.+++.+++++++++++|+++... ....+.... ....+.+... .......+.++....
T Consensus 96 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~ 161 (552)
T PRK09274 96 VDPGMGIKNLKQCLAEAQPDAFIGIPKAH-------LARRLFGWGKPSVRRLVTVGGR-------LLWGGTTLATLLRDG 161 (552)
T ss_pred cCCCccHHHHHHHHHhcCCCEEEeccHHH-------HHHHHhccCccchhheeccccc-------cccCCccHHHhcccC
Confidence 99999999999999999999999865210 001110000 0011111100 001122455544221
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHH
Q 005501 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419 (693)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L 419 (693)
.. .........++++++|+|||||||.||||+++|+++.+.+.+....+++.++|++++..|+.+.. .+
T Consensus 162 ~~----~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~pl~~~~-------~~ 230 (552)
T PRK09274 162 AA----APFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYGIEPGEIDLPTFPLFALF-------GP 230 (552)
T ss_pred cc----ccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHhCCCCCceeeeccCHHHhh-------hh
Confidence 11 11222334678999999999999999999999999999888887888999999998887765432 34
Q ss_pred HcCCEEEEecC------CCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHh
Q 005501 420 LNGATLALYQG------SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (693)
Q Consensus 420 ~~G~~lvi~~~------~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~ 493 (693)
..|+++++.+. ..++..+++.|+++++|++.++|++++.|.+.......++++||.+++||+++++++.+++.+
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~ 310 (552)
T PRK09274 231 ALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRA 310 (552)
T ss_pred hhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHHHHHHH
Confidence 56888887652 246789999999999999999999999998765445567899999999999999999999998
Q ss_pred hCC-CCceecccccccccceeccCCcC---------CCCccCccCCCCCCceEEEECC---------CCCCCCCCCCcee
Q 005501 494 KAW-YNAIIESCGGTELSSAYIQGSLL---------QPQAFGAFSTATMTAGLVILDE---------CGVPYPDDQPCVG 554 (693)
Q Consensus 494 ~~~-~~~l~n~YG~TE~~~~~~~~~~~---------~~~~~~~iG~p~~~~~~~ild~---------~~~~~p~G~~giG 554 (693)
.++ +++++|.||+||++...+..... ......++|+|+++++++|+|+ ++++++.|+ +|
T Consensus 311 ~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~--~G 388 (552)
T PRK09274 311 MLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGE--IG 388 (552)
T ss_pred HcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCC--ee
Confidence 876 47999999999998654432211 1112347899999999999994 567899998 49
Q ss_pred eEEE-----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHH
Q 005501 555 EVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 629 (693)
Q Consensus 555 el~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~ 629 (693)
||++ +.||++ +++.|...|..++ .|.+||+|||+|++++||+|+|+||.||+||++|++|+|.|||+
T Consensus 389 el~v~g~~~~~GY~~------~~~~t~~~~~~~~--~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~ 460 (552)
T PRK09274 389 EIVVAGPMVTRSYYN------RPEATRLAKIPDG--QGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCER 460 (552)
T ss_pred EEEEecCcccccccC------ChHHhhhhhcccC--CCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHH
Confidence 9998 467777 4456666554332 23469999999999999999999999999999999999999999
Q ss_pred HHhccCcccceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCC
Q 005501 630 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 687 (693)
Q Consensus 630 ~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P 687 (693)
+|. +||+|.+|+|++++++. + +.++++|++.++...+.++++++|++.+..+..|
T Consensus 461 ~l~-~~p~V~~~~v~~~~~~~-~-~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~~ 515 (552)
T PRK09274 461 IFN-THPGVKRSALVGVGVPG-A-QRPVLCVELEPGVACSKSALYQELRALAAAHPHT 515 (552)
T ss_pred HHH-hCcccceeEEEEeCCCC-C-ceEEEEEEccCccccchHHHhhhhHHHHHhcCCC
Confidence 995 99999999999998753 4 7899999998876666677889998888887544
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-62 Score=478.37 Aligned_cols=469 Identities=19% Similarity=0.239 Sum_probs=395.2
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
+|+++||++|++++++ .+||+||+++++++|..|++. +++||+|.+.+||..+++++++|.+|+|+++|.-
T Consensus 37 ~A~~~pdriAv~d~~~--------~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrlGv~PVlA 108 (542)
T COG1021 37 HAARYPDRIAVIDGER--------RLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAPVLA 108 (542)
T ss_pred HHhhcCCceEEecCcc--------cccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHcCcchhhc
Confidence 3589999999999988 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCc-eEEEcCCCCCCCCCCCCCcccHHHHhcccCCC
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (693)
-|.+...+|.+....+.|+++|.+... ..+...+++..+....+.. .+.+...... ....+..+.....
T Consensus 109 LpsHr~~Ei~~f~~~~e~~~~i~~~~~-~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~-------~~~~~~~~~~~a~-- 178 (542)
T COG1021 109 LPSHRASELGAFASQIEAALLIVARQH-SGFDYRPFARELVAKHPTLRHVIVAGEAEH-------PSVLEAALCHPAG-- 178 (542)
T ss_pred cchhhHHHHHHHHHhhcchheeechhh-cccCcHHHHHHHHhhCCcceEEEEccCCCC-------cchhhhhhhCccc--
Confidence 899999999999999999999998753 3445555666566555553 3333211110 0111222222211
Q ss_pred CCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchh--HHHHHHHH
Q 005501 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP--VILFSSFL 420 (693)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~--~~~~~~L~ 420 (693)
...+..+.+++++||...+.||||.||-|..+|....-+++...+.+++++.+++++..|..|.+.+ -.+++.++
T Consensus 179 ---~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~ 255 (542)
T COG1021 179 ---LFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFL 255 (542)
T ss_pred ---cCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhhCcCccceEEEecccccCCCCCCcchhheee
Confidence 1122345577899999999999999999999999988888878888999999999999999988776 45889999
Q ss_pred cCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCce
Q 005501 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (693)
Q Consensus 421 ~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (693)
.|+++|+.+ ++++..-..+|++++||+..++|.+...|++.......+|+|||.+-+||..+++.+.++....+ +|.+
T Consensus 256 agG~VVla~-~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~l-gC~L 333 (542)
T COG1021 256 AGGTVVLAP-DPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVL-GCQL 333 (542)
T ss_pred eccEEEECC-CCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhh-CchH
Confidence 999999977 67888999999999999999999999999999888889999999999999999999999888766 7999
Q ss_pred ecccccccccceeccCCcCCCCccCccCCCC-CCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCccccccccc
Q 005501 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADH 574 (693)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~ 574 (693)
-+.+||.|.-++++-.......-..+-|+|+ |.-+++|+|.+|++|++|++ |+|.. .+||+. .++.
T Consensus 334 QQVFGMAEGLvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE~--G~LltRGPYTirGYyr------ap~H 405 (542)
T COG1021 334 QQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEV--GELLTRGPYTIRGYYR------APEH 405 (542)
T ss_pred HHHhhhhhhhhcccccCCchHheeecCCCcCCCcceeEEecCCCCCCCCCCc--ceeeecCCeeeeeecc------Cchh
Confidence 9999999987766544333333345789998 67899999999999999995 99987 355655 4457
Q ss_pred ccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCce
Q 005501 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (693)
Q Consensus 575 t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~ 654 (693)
++..|..+. +|+|||++++++||+|.+.||.||||+.+|++|..+|||+.|+ .||.|.+|++|+.+|+-.| +
T Consensus 406 Na~aF~a~G------FYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL-~HP~V~~AAlVampDelLG-E 477 (542)
T COG1021 406 NARAFDADG------FYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLL-RHPAVHDAALVAMPDELLG-E 477 (542)
T ss_pred hhhccCcCC------ceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHh-hCchhhhhhhhcCchhhcC-c
Confidence 777888655 7999999999999999999999999999999999999999997 9999999999999999999 9
Q ss_pred EEEEEEEecCCCCCChHHHHHHHHHH-HHhhcCCCceecC
Q 005501 655 VLVIFVVLKKGFTSQPDKLKMIFSKA-IQSKLNPLFKVWC 693 (693)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~l~~~l~~~-L~~~m~P~~~v~~ 693 (693)
+.|||||.++. +++..+|+++|++. |.+|.+|..+.+|
T Consensus 478 ksCAfiv~~~~-~~~~~qlr~~L~~~GlAa~K~PDrie~v 516 (542)
T COG1021 478 KSCAFIVVKEP-PLRAAQLRRFLRERGLAAFKLPDRIEFV 516 (542)
T ss_pred ceeEEEEecCC-CCCHHHHHHHHHHcchhhhcCCcceeec
Confidence 99999999874 47889999999886 8889999877653
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-60 Score=535.31 Aligned_cols=474 Identities=19% Similarity=0.202 Sum_probs=376.6
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++.+|+++|+++.+. ..+..+.+||+||.++++++|.+|++. +++|++|+++++|++++++++|||+++|++++|++
T Consensus 32 ~~~~p~~~a~~~~~~--~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~ 109 (538)
T TIGR03208 32 VANCPDKPALTAYRD--GHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLM 109 (538)
T ss_pred HHHCCCceEEEeecc--cCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCEEEeccC
Confidence 367999999986422 112234899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCCCCCCCCCcccHHHHhcccCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (693)
|.++.+++.+++++++++++++++.+. ...............+. .+++.+.. ....|+.++......
T Consensus 110 ~~~~~~~l~~~l~~~~~~~li~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 178 (538)
T TIGR03208 110 PIFRERELSFMLNHADSKVFVVPSVFR-GFDHAAMARELQSKLPALRQVVVIDGD----------GDDSFDRVLMTPERD 178 (538)
T ss_pred cccCHHHHHHHHHhcCCeEEEEccccc-cccHHHHHHHHhccCCcceEEEEecCC----------CCcCHHHHhhccccc
Confidence 999999999999999999999987532 11111111111122221 22222211 112333333211100
Q ss_pred CCCC---CCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchh-HHHHHH
Q 005501 343 PRPN---YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (693)
Q Consensus 343 ~~~~---~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (693)
..+. ........++++++|+|||||||.||||+++|+++...+......++++.+|++++++|++|..+. +.++.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~ 258 (538)
T TIGR03208 179 DTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERLELGGGDVILMASPMAHQTGFMYGLMMP 258 (538)
T ss_pred cccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhcCCCCCCeEEEeCCchhHHHHHHHHHHH
Confidence 0000 011123467999999999999999999999999999888887788889999999999999998876 668899
Q ss_pred HHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCC
Q 005501 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (693)
Q Consensus 419 L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~ 498 (693)
+..|+++++.+ ..++..+++.++++++|++.++|+++..+.........+++++|.+++||+++++++.+++.+.+ ++
T Consensus 259 l~~g~~~~~~~-~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~ 336 (538)
T TIGR03208 259 LILNATAVLQD-IWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELL-GA 336 (538)
T ss_pred HHcCCEEEecC-ccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHHHc-CC
Confidence 99999998876 56789999999999999999999999988765433345678999999999999999988887766 58
Q ss_pred ceecccccccccceeccCCcCC-CCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCccccccc
Q 005501 499 AIIESCGGTELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNA 572 (693)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~ 572 (693)
+++|.||+||++...+...... .....++|+|++|++++|+|+++++++.|+. |||++ ..||+++ +
T Consensus 337 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~~~~~g~~--Gel~v~g~~~~~gy~~~------~ 408 (538)
T TIGR03208 337 LIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQGET--GRLLVRGCSNFGGYLKR------P 408 (538)
T ss_pred eEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEECCCCCCCcCCCC--cEEEEecCcccccccCC------c
Confidence 8999999999986544332221 1223578999999999999999999999985 99998 3456653 2
Q ss_pred ccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCC
Q 005501 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652 (693)
Q Consensus 573 ~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g 652 (693)
+.++ + .+.+||+|||+|++++||+++++||.||+||++|++|+|.|||++|. .||+|.+++|++.++...+
T Consensus 409 ~~~~--~------~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~-~~~~v~~~~v~~~~~~~~g 479 (538)
T TIGR03208 409 HLNS--T------DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLY-QHPAVAQVAIVAYPDERLG 479 (538)
T ss_pred cccc--c------cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHh-cCcceeeEEEEeccCCCCC
Confidence 2332 1 13459999999999999999999999999999999999999999995 9999999999999988777
Q ss_pred ceEEEEEEEecCCCCCChHHHHHHHHH-HHHhhcCCCceec
Q 005501 653 PEVLVIFVVLKKGFTSQPDKLKMIFSK-AIQSKLNPLFKVW 692 (693)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~l~~~l~~-~L~~~m~P~~~v~ 692 (693)
+.++++|++.++...+.+++++++++ +|+.|++|.+++.
T Consensus 480 -~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~ 519 (538)
T TIGR03208 480 -ERACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIPERLEV 519 (538)
T ss_pred -ceEEEEEEECCCCCCCHHHHHHHHHhcchhhccCCcEEEE
Confidence 89999999987767788899999996 7999999998765
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=540.85 Aligned_cols=479 Identities=20% Similarity=0.212 Sum_probs=385.3
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
+++++|+++|+++.+.+ +.+||+||.++++++|+.|.+. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 25 ~~~~~~~~~ai~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l 98 (559)
T PRK08315 25 TAARYPDREALVYRDQG------LRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTI 98 (559)
T ss_pred HHHHCCCCeEEEEcCCC------eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCeEEEec
Confidence 34789999999985432 3899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcC-------------CC--ceEEEcCCCCCCCCCCCCC
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-------------PL--KAIVLPAIGNDVGIPLREQ 328 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~~~~~~~~ 328 (693)
+|.++.+++..+++.++++++++++..... .....+....... +. ..+.+... ...+
T Consensus 99 ~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 170 (559)
T PRK08315 99 NPAYRLSELEYALNQSGCKALIAADGFKDS-DYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDE-------KHPG 170 (559)
T ss_pred CccCCHHHHHHHHHhcCCCEEEEecccccc-chHHHHHHhhhhhhcccccccccccCCCceeEEeeccc-------CCcc
Confidence 999999999999999999999998753211 0000011110000 00 11111110 0112
Q ss_pred cccHHHHhcccCCCC-CCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCcc
Q 005501 329 DLSWKDFLSSVDYHP-RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLG 407 (693)
Q Consensus 329 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 407 (693)
...|.++........ ...........+++++|++|||||||.||||.++|+++.+.+......++++++|+++...|+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~ 250 (559)
T PRK08315 171 MLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPVPLY 250 (559)
T ss_pred cccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhcCCCCCceEEEecCcH
Confidence 244555543321100 0001112234578899999999999999999999999998888887888999999999999999
Q ss_pred ccchh-HHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcc
Q 005501 408 WVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVD 486 (693)
Q Consensus 408 ~~~~~-~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~ 486 (693)
|..+. +.++.++..|+++++.....++..+++.++++++|++.++|+++..++........++++||.+++||++++..
T Consensus 251 ~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~~~~~~ 330 (559)
T PRK08315 251 HCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGSPCPIE 330 (559)
T ss_pred HHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEecCCCCCHH
Confidence 98887 56889999999999776667889999999999999999999999988876554556788999999999999999
Q ss_pred hHHHHHhhCCCCceecccccccccceeccCCcCC--CCccCccCCCCCCceEEEECCC-CCCCCCCCCceeeEEE-----
Q 005501 487 DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ--PQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGL----- 558 (693)
Q Consensus 487 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~iG~p~~~~~~~ild~~-~~~~p~G~~giGel~v----- 558 (693)
+.+.+.+.++..+++|.||+||++..++...... .....++|+|++|++++|+|++ +++++.|+. |||++
T Consensus 331 ~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~--GEl~v~g~~~ 408 (559)
T PRK08315 331 VMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQ--GELCTRGYSV 408 (559)
T ss_pred HHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCc--eEEEEECchh
Confidence 9988888876667999999999987544333221 2345789999999999999988 999999995 99998
Q ss_pred ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCccc
Q 005501 559 FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 638 (693)
Q Consensus 559 ~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V 638 (693)
..||++ +++.++..|.. .+||+|||+|++++||.++|+||.|++||++|++|++.|||++|. .+|+|
T Consensus 409 ~~gy~~------~~~~~~~~~~~------~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~-~~~~v 475 (559)
T PRK08315 409 MKGYWN------DPEKTAEAIDA------DGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLY-THPKI 475 (559)
T ss_pred hhhhcC------ChhHHhhcCCC------CCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHH-hCCCc
Confidence 457776 44455555532 339999999999999999999999999999999999999999996 99999
Q ss_pred ceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceecC
Q 005501 639 LETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 639 ~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~~ 693 (693)
.+++|++++++..+ +.+++||++.++...+.++++++++++||.|++|..++.+
T Consensus 476 ~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v 529 (559)
T PRK08315 476 QDVQVVGVPDEKYG-EEVCAWIILRPGATLTEEDVRDFCRGKIAHYKIPRYIRFV 529 (559)
T ss_pred eEEEEEecCCCCCC-eEEEEEEEeCCCCCCCHHHHHHHHHhhcccccCCcEEEEc
Confidence 99999999887766 8899999988766677889999999999999999988753
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-61 Score=553.20 Aligned_cols=444 Identities=19% Similarity=0.161 Sum_probs=335.7
Q ss_pred CCCCCCcEEEEEecC-CCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 186 RRKEDNTVAIVWRED-RCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 186 a~~~pd~~Al~~~~~-~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
++++|+++|+.+... ....+.++.+||+||.++++++|++|+++ +++||+|+|+++|+++|++++|||+++|+++||+
T Consensus 53 ~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~G~v~vpl 132 (660)
T PLN02861 53 VKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPL 132 (660)
T ss_pred HHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEe
Confidence 478999999975310 00123456899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCC---CceEEEcCCCCCC--C-CCCCCCcccHHHHhc
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---LKAIVLPAIGNDV--G-IPLREQDLSWKDFLS 337 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~ 337 (693)
++.++.+++.+++++++++++|+++... +.+.......+ ..++.+....... . ........+|.++..
T Consensus 133 ~~~~~~~~l~~il~~s~~~~v~~~~~~~------~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (660)
T PLN02861 133 YDTLGANAVEFIINHAEVSIAFVQESKI------SSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSL 206 (660)
T ss_pred cCCCCHHHHHHHHHcCCCCEEEECHHHH------HHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHH
Confidence 9999999999999999999999976421 11111111111 1223332111000 0 000011245666654
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcC-----CCCCCEEEEeCCccccchh
Q 005501 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-----LKVGDVYCWPTNLGWVMGP 412 (693)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-----~~~~d~~l~~~~~~~~~~~ 412 (693)
.... . .......++|+|+|+|||||||.||||++||++++..+......++ +.++|++++++|++|.++.
T Consensus 207 ~~~~---~--~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~~ 281 (660)
T PLN02861 207 MGSL---D--CELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYDQ 281 (660)
T ss_pred hCcc---c--CCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcHHHHHHH
Confidence 3221 0 1112345799999999999999999999999999887765544433 4788999999999999987
Q ss_pred HHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcC-----------------------------
Q 005501 413 VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN----------------------------- 463 (693)
Q Consensus 413 ~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~----------------------------- 463 (693)
...+.+++.|+++++.+ .++..+++.|+++++|++.++|++++.|....
T Consensus 282 ~~~~~~l~~G~~v~~~~--~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~ 359 (660)
T PLN02861 282 VIETYCISKGASIGFWQ--GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKG 359 (660)
T ss_pred HHHHHHHHhCCEEEEeC--CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcC
Confidence 55566899999998874 46789999999999999999999999886410
Q ss_pred cC----CC-C----------CC-ccccEEEeecCCCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCccCcc
Q 005501 464 CL----EG-L----------DW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAF 527 (693)
Q Consensus 464 ~~----~~-~----------~l-~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~i 527 (693)
.. .+ . .+ .++|.+++||+++++++.+ +...++...++|+||+||+++.++..........+++
T Consensus 360 ~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsv 438 (660)
T PLN02861 360 LKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTV 438 (660)
T ss_pred CCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhhhhceeecccccCCCCCCc
Confidence 00 00 0 01 4799999999999998755 4445544579999999999764443322222346799
Q ss_pred CCCCCCceEEEEC--CCC-CCCCCCCCceeeEEE-----ecccCCCcccccccccccccccccccCCCceeeeecceEEE
Q 005501 528 STATMTAGLVILD--ECG-VPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR 599 (693)
Q Consensus 528 G~p~~~~~~~ild--~~~-~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~ 599 (693)
|+|+++++++|+| ++| ..++.+. .|||++ +.||++ +++.|++.|. +| ||+|||+|++
T Consensus 439 G~p~p~~ev~i~d~~~~g~~~~~~~~--~GEi~vrGp~v~~GY~~------~pe~T~~~f~-----dG--w~~TGDlg~~ 503 (660)
T PLN02861 439 GVPMTTIEARLESVPEMGYDALSDVP--RGEICLRGNTLFSGYHK------RQDLTEEVLI-----DG--WFHTGDIGEW 503 (660)
T ss_pred cCccCceEEEEEEccccCcccCCCCC--ceeEEEcCCcccccccC------CHHHHHhhhh-----cc--CcccCceEEE
Confidence 9999999999998 334 2334444 499988 567776 5668888884 13 9999999999
Q ss_pred ecCCcEEEEeecCCcccc-CCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEec
Q 005501 600 TVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK 663 (693)
Q Consensus 600 ~~dG~l~~~GR~dd~ik~-~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~ 663 (693)
|+||+|+|+||+||+||+ +|++|+|.|||++|. +||.|.+|+|++.+ .+ +.++|+||++
T Consensus 504 d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~-~~p~V~~a~V~G~~---~~-~~~~A~vv~~ 563 (660)
T PLN02861 504 QPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYS-RCPLIASIWVYGNS---FE-SFLVAVVVPD 563 (660)
T ss_pred CCCCcEEEEeccccceEcCCCeEEcHHHHHHHHh-cCCCeeEEEEEecC---Cc-ceeEEEEEcC
Confidence 999999999999999997 799999999999995 99999999999965 23 7899999986
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-60 Score=535.89 Aligned_cols=465 Identities=18% Similarity=0.184 Sum_probs=372.0
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++.+|+++|+++...+ +.+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 38 a~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 111 (546)
T PLN02330 38 AELYADKVAFVEAVTG------KAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGAN 111 (546)
T ss_pred hhcCCCccEEEecCCC------CcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEeccCC
Confidence 4689999999875321 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (693)
+.++.+++.+++++++++++|+++...... +.....++.+.... ......|.++...... .
T Consensus 112 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~----------~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~--~ 172 (546)
T PLN02330 112 PTALESEIKKQAEAAGAKLIVTNDTNYGKV----------KGLGLPVIVLGEEK-------IEGAVNWKELLEAADR--A 172 (546)
T ss_pred ccCCHHHHHHHHHhcCCeEEEEccchhhhH----------hhcCCcEEEecCCC-------CCCcccHHHHHhhccc--c
Confidence 999999999999999999999997643211 11122233332111 1123456666554322 1
Q ss_pred CCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcC--CCCCCEEEEeCCccccchhH-HHHHHHHc
Q 005501 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID--LKVGDVYCWPTNLGWVMGPV-ILFSSFLN 421 (693)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~~~~~~~~~~-~~~~~L~~ 421 (693)
..........++++++|+|||||||.||||+++|+++...+......++ ....++++...|++|.+++. .++.+|..
T Consensus 173 ~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~ 252 (546)
T PLN02330 173 GDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRN 252 (546)
T ss_pred CcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhhc
Confidence 1111122345689999999999999999999999998776543221111 22346788889999988874 56788999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCc--cccEEEeecCCCCcchHHHHHhhCCCCc
Q 005501 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT--KIRSFASTGETSNVDDDLWLSSKAWYNA 499 (693)
Q Consensus 422 G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~--~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (693)
|+++++.+ ..++..+++.++++++|.+.++|+++..|+........+++ ++|.+++||+++++++.+++.+.+++++
T Consensus 253 g~~~~~~~-~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~ 331 (546)
T PLN02330 253 KGKVVVMS-RFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQ 331 (546)
T ss_pred CCEEEEec-ccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHHHcCCCe
Confidence 99999886 56788999999999999999999999999876443333444 4789999999999999999998888899
Q ss_pred eecccccccccceeccCCcCC----CCccCccCCCCCCceEEEEC-CCCCCCCCCCCceeeEEE-----ecccCCCcccc
Q 005501 500 IIESCGGTELSSAYIQGSLLQ----PQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRL 569 (693)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~~~ild-~~~~~~p~G~~giGel~v-----~~gy~~~~~~~ 569 (693)
+++.||+||++.......... .....++|+|++|++++|+| ++++++|.|+. |||++ ..||++
T Consensus 332 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~--Gel~v~g~~~~~gy~~----- 404 (546)
T PLN02330 332 VQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTP--GELCVRSQCVMQGYYN----- 404 (546)
T ss_pred EEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCc--eEEEEecchhhhhhcc-----
Confidence 999999999976443321111 12345899999999999999 57899999985 99998 456776
Q ss_pred cccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCC
Q 005501 570 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 649 (693)
Q Consensus 570 ~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~ 649 (693)
+++.++..|. .++||+|||+|++++||+++|+||.||+||++|++|+|.|||++|. ++|+|.+++|++++++
T Consensus 405 -~~~~~~~~~~------~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~ 476 (546)
T PLN02330 405 -NKEETDRTID------EDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILL-THPSVEDAAVVPLPDE 476 (546)
T ss_pred -Cccchhhhcc------CCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHH-hCCchheEEEEecccc
Confidence 3445555553 2349999999999999999999999999999999999999999995 9999999999999988
Q ss_pred CCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 650 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 650 ~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
..+ +.++++|++.++...+.++++++++++|+.|+.|..++.
T Consensus 477 ~~g-~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~~~~ 518 (546)
T PLN02330 477 EAG-EIPAACVVINPKAKESEEDILNFVAANVAHYKKVRVVQF 518 (546)
T ss_pred ccC-ceeEEEEEECCCCCCCHHHHHHHHHHhcccccCceEEEE
Confidence 777 899999999876666778999999999999999997764
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-62 Score=564.36 Aligned_cols=550 Identities=20% Similarity=0.198 Sum_probs=436.5
Q ss_pred HHcCCCchhhHHHHHHHHHHHhhccCC-ChhhHHHHHHHhHhcCCCCCCCCchhhhHHHhhhcccCCCCCC-c------c
Q 005501 14 MKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGPP-L------Y 85 (693)
Q Consensus 14 ~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~~-~------~ 85 (693)
.++++......+|.++++++++....+ +||++||+. +++.+.+.|+.+ .|+|+++|++++...... . .
T Consensus 68 ~~lr~~~~~~~~~~~~~~~~~~~~~~~~~h~~~p~~~-l~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~ 143 (642)
T COG1020 68 LPLRLDISGRVTFAELLARLRELALGALEHQDLPGEQ-LVERLGRERSLS---EPLFDVVFVLQNGPTAGLKLPGLRVEE 143 (642)
T ss_pred eeeeeccCCCCCHHHHHHHHHHHHHHHhhccCCCHHH-HHHHHhhhccCC---CCceeeEEEecCccccccccccccccc
Confidence 345677777889999999999998888 999999999 999999999855 566999999998654431 1 1
Q ss_pred ccCCcccccccchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcccceeccceee--ccCCCCCC
Q 005501 86 WFPSLDQSKLTNLGNALEIHGPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI--LDRTDKSK 162 (693)
Q Consensus 86 ~~~~~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~~~~~~~ 162 (693)
+... ....++|+.+.+.+. ++...+ |.. ++|++.+++++..+|..++..+..++......+ +...++
T Consensus 144 ~~~~-~~~~~~d~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ll~~~e~-- 213 (642)
T COG1020 144 LGIE-TPAAKLDLALAVVEG--GLRLSFDYAR-----ELFDAETIERELRHFLQLLAALADAPRTSLSALPLLLPSER-- 213 (642)
T ss_pred cccc-CcccccceEEEEEeC--ceEEEEEeec-----ccCCHHHHHHHHHHHHHHHHHHHhCcccCcccCCCCCHHHH--
Confidence 1111 345677888877665 677777 888 999999999999999999999877666333332 222222
Q ss_pred CCCCcCCCCccchhhhhcc--CcccCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEE
Q 005501 163 HGGTWLPGSVLNIAECCLL--PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAID 239 (693)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~--~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~ 239 (693)
..|+..........+++ +..+++.+|+++|+++.+. ++||+||+.+++++|+.|.+. ++++++|+++
T Consensus 214 --~~~~~~~~~~~~~~~i~~~f~~~a~~~p~~~a~~~~~~--------~lty~el~~~a~~la~~l~~~g~~~~~~V~i~ 283 (642)
T COG1020 214 --EVWNALAAPIPLRLTIHLLFEEQAATTPDAVALVRGGQ--------QLTYAELDARANRLARLLISLGVGPGETVAIL 283 (642)
T ss_pred --hhccccccCCCccchHHHHHHHHHHhCCCceeEecCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCeEEEE
Confidence 33662222222122222 2456789999999998866 999999999999999999999 9999999999
Q ss_pred cCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCC
Q 005501 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGN 319 (693)
Q Consensus 240 ~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (693)
++++++++++++|++|+|++|+|+||.+|.+|+.+++++++++.+++...........+.
T Consensus 284 ~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------------------- 343 (642)
T COG1020 284 ADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG-------------------- 343 (642)
T ss_pred cCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCc--------------------
Confidence 999999999999999999999999999999999999999999999998542211000000
Q ss_pred CCCCCCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCE
Q 005501 320 DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDV 399 (693)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~ 399 (693)
+..+........ .........+++++|++|||||||+||||+++|+++.+.+.+....+.++.+|+
T Consensus 344 ----------~~~~~~~~~~~~----~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~~~~~~d~ 409 (642)
T COG1020 344 ----------LALDDALSEIPD----TDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDR 409 (642)
T ss_pred ----------cccccccccCCc----cCcccccCCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhcCCCcccE
Confidence 000000000000 000012345689999999999999999999999999998888888899999999
Q ss_pred EEEeCCccccchhHHHHHHHHcCCEEEEecCC--CChhhHHHHHHHcCCcEEeechHHHHHHHhcCcC--CCCCCccccE
Q 005501 400 YCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRS 475 (693)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~~L~~G~~lvi~~~~--~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~lr~ 475 (693)
+++..+++||.+.+++|.++++|+++++.+.. .++..+.+.++++++|++..+|+++..+...... .......+|.
T Consensus 410 ~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~ 489 (642)
T COG1020 410 VLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQ 489 (642)
T ss_pred EeecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccE
Confidence 99999999999999999999999999998753 3778999999999999999999999999876221 1122235999
Q ss_pred EEeecCCCCcchHHHHHhhCC-CCceecccccccccceeccCCcCCCCc-cCccCCCCCCceEEEECCCCCCCCCCCCce
Q 005501 476 FASTGETSNVDDDLWLSSKAW-YNAIIESCGGTELSSAYIQGSLLQPQA-FGAFSTATMTAGLVILDECGVPYPDDQPCV 553 (693)
Q Consensus 476 v~~gGe~l~~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~-~~~iG~p~~~~~~~ild~~~~~~p~G~~gi 553 (693)
+++|||+++..+...+....+ ...+.|.||+||++...+......... ..+||+|++|+.++|+|..++++|.|++
T Consensus 490 ~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild~~~~~~p~gv~-- 567 (642)
T COG1020 490 LLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVP-- 567 (642)
T ss_pred EEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEECCCCCcCCCCCC--
Confidence 999999999999887766544 468999999999776444333221111 5699999999999999999999999996
Q ss_pred eeEEE-----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHH
Q 005501 554 GEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 628 (693)
Q Consensus 554 Gel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE 628 (693)
||+++ +.||++ ++++|+++|..+ ++|+|||++|+.+||.++|+||.|+|||++|+||+++|||
T Consensus 568 gel~i~g~~~a~gy~~------~p~lt~~~f~~~------~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel~eie 635 (642)
T COG1020 568 GELYIAGLGLALGYLN------RPDLTAERFIAL------RLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIE 635 (642)
T ss_pred eeeEECCcchhhhhcC------ChhhhHHHhhhc------cCccCCCeeeECCCCeEEEeccccceeEeceEecCcHHHH
Confidence 88887 677777 555999999876 4999999999999999999999999999999999999999
Q ss_pred HHHhccCc
Q 005501 629 RVCDQADE 636 (693)
Q Consensus 629 ~~L~~~~p 636 (693)
+.+. ++|
T Consensus 636 ~~l~-~~~ 642 (642)
T COG1020 636 AALA-EQP 642 (642)
T ss_pred HHHh-cCC
Confidence 9994 765
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-60 Score=543.05 Aligned_cols=475 Identities=17% Similarity=0.135 Sum_probs=364.4
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++++|+++|+++.++ .+||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 47 a~~~p~~~Ai~~~~~--------~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~G~~~v~l~ 118 (600)
T PRK08279 47 AARHPDRPALLFEDQ--------SISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLN 118 (600)
T ss_pred HHhCCCCcEEEeCCC--------cccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecC
Confidence 368999999999776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC-ceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (693)
+.++.+++.+++++++++++|++++.. +....+...... ..+.+...... .....|.++.......+
T Consensus 119 ~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 186 (600)
T PRK08279 119 TQQRGAVLAHSLNLVDAKHLIVGEELV------EAFEEARADLARPPRLWVAGGDTL------DDPEGYEDLAAAAAGAP 186 (600)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHhhhhcccceEEEecCccc------cccccHHHHhhhcccCC
Confidence 999999999999999999999987532 112222221111 12222111100 00223444433222111
Q ss_pred CCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHH-HHHHHHcC
Q 005501 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNG 422 (693)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~L~~G 422 (693)
...........++++++|+|||||||.||||+++|+++.+.+.+....++++++|++++++|++|.+++.. ++.++..|
T Consensus 187 ~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G 266 (600)
T PRK08279 187 TTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAG 266 (600)
T ss_pred ccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcC
Confidence 11111223345789999999999999999999999999999988888899999999999999999999854 45567777
Q ss_pred CEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceec
Q 005501 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (693)
Q Consensus 423 ~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (693)
+++++.+ ..++..+++.++++++|++.++|++++.++...........++|.+ +|+.+++++.+++.+.++...++|
T Consensus 267 ~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~ 343 (600)
T PRK08279 267 ATLALRR-KFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILE 343 (600)
T ss_pred cEEEEcC-CCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEE--ecCCCCHHHHHHHHHHhCcceeee
Confidence 7777765 5678899999999999999999999999887644333344567754 477899999999988887667999
Q ss_pred ccccccccceeccCCcCCCCccCccCCCCC----Cce---------EEEECCCC--CCCCCCCCceeeEEE---ecccCC
Q 005501 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATM----TAG---------LVILDECG--VPYPDDQPCVGEVGL---FPLYLG 564 (693)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~----~~~---------~~ild~~~--~~~p~G~~giGel~v---~~gy~~ 564 (693)
.||+||++..++.. ....+++|++.+ +.. ..|.|.++ .+++.|+. ||+++ .++.+.
T Consensus 344 ~YG~tE~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~--Gel~~~i~~~~~~~ 417 (600)
T PRK08279 344 FYAASEGNVGFINV----FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEV--GLLIGRITDRGPFD 417 (600)
T ss_pred eecccccceeeccc----CCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCc--eeEEEEecCccccc
Confidence 99999998643321 123345666555 332 23444333 35788884 99874 222222
Q ss_pred CcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEE
Q 005501 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644 (693)
Q Consensus 565 ~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv 644 (693)
+|.++..|+..|..+++..+.+||+|||+|++++||+++|+||.||+||++|+||+|.|||++|. +||+|.+|+|+
T Consensus 418 ---GY~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~-~~p~V~~a~v~ 493 (600)
T PRK08279 418 ---GYTDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALS-GFPGVEEAVVY 493 (600)
T ss_pred ---ccCCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHh-cCCCcceEEEE
Confidence 22366677778877666667789999999999999999999999999999999999999999996 89999999999
Q ss_pred eecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceecC
Q 005501 645 SVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 645 ~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~~ 693 (693)
+++++..+....+++++..++...+.++++++|+++||.||+|..++.+
T Consensus 494 gv~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v 542 (600)
T PRK08279 494 GVEVPGTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPLFVRLV 542 (600)
T ss_pred EeecCCCCCccceeEEEecCCccCCHHHHHHHHHhhCccccCCeEEEee
Confidence 9987653325566777766555678899999999999999999988753
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-60 Score=537.90 Aligned_cols=474 Identities=21% Similarity=0.246 Sum_probs=377.4
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++++|+++|+++.+. .+||+||.++++++|+.|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 42 ~~~~p~~~a~~~~~~--------~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~ 113 (573)
T PRK05605 42 VARFGDRPALDFFGA--------TTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVEHN 113 (573)
T ss_pred HHHCCCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEeecC
Confidence 468999999998766 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC-ceEEEcCCCCCC--------------------CC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDV--------------------GI 323 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------------------~~ 323 (693)
|.++.+++.+++++++++++|+++... .....+.+.... .++.+....... ..
T Consensus 114 ~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (573)
T PRK05605 114 PLYTAHELEHPFEDHGARVAIVWDKVA------PTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAALT 187 (573)
T ss_pred cCCCHHHHHHHHhccCCcEEEechhhH------HHHHhhhhccccceeEeeecccccccccccccccccccccccccccc
Confidence 999999999999999999999976432 111111111111 111111000000 00
Q ss_pred CCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcC-C-CCCCEEE
Q 005501 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-L-KVGDVYC 401 (693)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-~-~~~d~~l 401 (693)
....+..+|.++......... .........++++++++|||||||.||+|+++|+++...+......+. + ..+++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 266 (573)
T PRK05605 188 GPAPGTVPWETLVDAAIGGDG-SDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVL 266 (573)
T ss_pred cCCCcceeHHHHhhccccccc-cccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcEEE
Confidence 001233456665543221000 001122346789999999999999999999999998877654433322 2 3468999
Q ss_pred EeCCccccchh-HHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeec
Q 005501 402 WPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480 (693)
Q Consensus 402 ~~~~~~~~~~~-~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG 480 (693)
+..|+.|.+++ ..++.++..|+++++.+ ..+++.+++.++++++|++.++|++++.|.+.......++++||.+++||
T Consensus 267 ~~~p~~~~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg 345 (573)
T PRK05605 267 AALPMFHAYGLTLCLTLAVSIGGELVLLP-APDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGA 345 (573)
T ss_pred EecChHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEECC
Confidence 99999998887 45677899999999986 46788999999999999999999999999987655566788999999999
Q ss_pred CCCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCC--CCCCCCCCCceeeEEE
Q 005501 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC--GVPYPDDQPCVGEVGL 558 (693)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~--~~~~p~G~~giGel~v 558 (693)
+++++++.+.+.+.+ +.++++.||+||+++.+...........+++|+|++|+.++|+|++ +++++.|.. |||++
T Consensus 346 ~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~--Gel~v 422 (573)
T PRK05605 346 MALPVSTVELWEKLT-GGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEE--GELLV 422 (573)
T ss_pred CcCCHHHHHHHHHHh-CCCeecccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCe--eEEEE
Confidence 999999988887665 5789999999999876554433333446789999999999999976 589999984 99998
Q ss_pred -----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhc
Q 005501 559 -----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633 (693)
Q Consensus 559 -----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~ 633 (693)
..||++ +++.+++.|. .| ||+|||+|+++++|+++++||.||+||++|++|+|.|||++|.
T Consensus 423 ~~~~~~~gy~~------~~~~~~~~~~-----~g--~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~- 488 (573)
T PRK05605 423 RGPQVFKGYWN------RPEETAKSFL-----DG--WFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLR- 488 (573)
T ss_pred ecCchhhhhcC------ChhHhhhccc-----CC--CcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHH-
Confidence 345655 4445665654 23 9999999999999999999999999999999999999999996
Q ss_pred cCcccceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceecC
Q 005501 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 634 ~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~~ 693 (693)
.||.|.+++|++.++...+ +.++++++++++...+.++|+++++++|+.+++|..++.+
T Consensus 489 ~~~~i~~~~v~~~~~~~~~-~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~~ 547 (573)
T PRK05605 489 EHPGVEDAAVVGLPREDGS-EEVVAAVVLEPGAALDPEGLRAYCREHLTRYKVPRRFYHV 547 (573)
T ss_pred hCcccceEEEEeeecccCC-eEEEEEEEECCCCCCCHHHHHHHHHHhCccccCCcEEEEe
Confidence 9999999999999988777 8999999998876778899999999999999999887653
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-60 Score=534.34 Aligned_cols=479 Identities=19% Similarity=0.204 Sum_probs=382.8
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++++|+++|+++.+.+ +.+||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 28 ~~~~p~~~a~~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G~~~v~l~ 101 (558)
T PRK12583 28 VARFPDREALVVRHQA------LRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNIN 101 (558)
T ss_pred HHHCCCCeEEEecCCC------cEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhCCEEEecC
Confidence 3689999999885432 3899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhc-------------CCCceEEEcCCCCCCCCCCCCCccc
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-------------APLKAIVLPAIGNDVGIPLREQDLS 331 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (693)
+.++.+++..++++++++++|+++..... +....+...... .+.....+..... .......
T Consensus 102 ~~~~~~~~~~~l~~~~~~~ii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 175 (558)
T PRK12583 102 PAYRASELEYALGQSGVRWVICADAFKTS-DYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPA-----PPPGFLA 175 (558)
T ss_pred CCCCHHHHHHHHHhcCCcEEEEecccccc-chhHHHHHHhhhhccccccccccccCCcceEEEEecCC-----CCccccc
Confidence 99999999999999999999998753211 111111111110 0110011111000 0112234
Q ss_pred HHHHhcccCCCCC-CCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccc
Q 005501 332 WKDFLSSVDYHPR-PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVM 410 (693)
Q Consensus 332 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~ 410 (693)
|++.......... ..........++++++++|||||||.||||.++|+++.+.+......++++++|+++...|++|.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 255 (558)
T PRK12583 176 WHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVPVPLYHCF 255 (558)
T ss_pred hHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHhCCCCCCeEEEecCchhhh
Confidence 5544332211000 000111234578899999999999999999999999988888777788999999999999999999
Q ss_pred hh-HHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHH
Q 005501 411 GP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDL 489 (693)
Q Consensus 411 ~~-~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~ 489 (693)
+. +.++.++..|++++++....++..+++.++++++|++.++|+++..++........+++++|.+++||+++++.+.+
T Consensus 256 g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~ 335 (558)
T PRK12583 256 GMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPIEVMR 335 (558)
T ss_pred hHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecCCCCCHHHHH
Confidence 87 66788899999998876667888999999999999999999999888876544556688999999999999999999
Q ss_pred HHHhhCCCCceecccccccccceeccCCcC--CCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----eccc
Q 005501 490 WLSSKAWYNAIIESCGGTELSSAYIQGSLL--QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLY 562 (693)
Q Consensus 490 ~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy 562 (693)
++.+.++...+++.||+||++.+.+..... ......++|+|++++.++|+|+++++++.|+. |||++ ..||
T Consensus 336 ~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~gy 413 (558)
T PRK12583 336 RVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDGATVPRGEI--GELCTRGYSVMKGY 413 (558)
T ss_pred HHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCCCCCCCCCCe--eEEEEEeCccchhh
Confidence 998888777899999999999765543321 12345789999999999999999999999984 99998 3566
Q ss_pred CCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeE
Q 005501 563 LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETA 642 (693)
Q Consensus 563 ~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~ 642 (693)
++ +++.+...|.. .+||+|||+|++++||++++.||+||+||++|.+|+|.|||++|. .||+|.+++
T Consensus 414 ~~------~~~~~~~~~~~------~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~-~~~~v~~~~ 480 (558)
T PRK12583 414 WN------NPEATAESIDE------DGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLF-THPAVADVQ 480 (558)
T ss_pred cC------ChHHHHhhcCC------CCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHH-hCCCeeEEE
Confidence 65 33455544532 349999999999999999999999999999999999999999996 899999999
Q ss_pred EEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 643 AISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 643 Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
|++++++..+ +.++++++..++...+..+++++++++||.++.|..++.
T Consensus 481 v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~i~~~~~~~L~~~~~P~~i~~ 529 (558)
T PRK12583 481 VFGVPDEKYG-EEIVAWVRLHPGHAASEEELREFCKARIAHFKVPRYFRF 529 (558)
T ss_pred EEeeecCCCC-cEEEEEEEECCCCCCCHHHHHHHHHhhcccCcCCcEEEE
Confidence 9999987776 899999998876667778999999999999999998764
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-60 Score=526.88 Aligned_cols=455 Identities=19% Similarity=0.173 Sum_probs=377.2
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++++|+++|+++.+. .+||.||.++++++|.+|.+. +++|++|+++++|++++++++|||+++|++++|++
T Consensus 12 ~~~~~~~~a~~~~~~--------~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~l~ 83 (497)
T PRK06145 12 ARRTPDRAALVYRDQ--------EISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPIN 83 (497)
T ss_pred HHHCCCceEEEECCc--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecc
Confidence 468999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (693)
+.++.+++..+++++++++++++...... .. .....+.++.... ..+..+......
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~----------~~-~~~~~~~~~~~~~----------~~~~~~~~~~~~--- 139 (497)
T PRK06145 84 YRLAADEVAYILGDAGAKLLLVDEEFDAI----------VA-LETPKIVIDAAAQ----------ADSRRLAQGGLE--- 139 (497)
T ss_pred cccCHHHHHHHHHhcCCcEEEEccchhhh----------hh-cccceEEecCccc----------chhHHHhccCCC---
Confidence 99999999999999999999998753211 00 0111122211000 011111111000
Q ss_pred CCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchh-HHHHHHHHcCC
Q 005501 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGA 423 (693)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~ 423 (693)
........++++++++|||||||.||||+++|+++..........+++..+++++...|+.|.+++ +..+.+++.|+
T Consensus 140 --~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~ 217 (497)
T PRK06145 140 --IPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGG 217 (497)
T ss_pred --CCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccC
Confidence 011123467899999999999999999999999988766666677889999999999999999887 44577899999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceecc
Q 005501 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (693)
Q Consensus 424 ~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (693)
++++.+ ..++..+++.++++++|++.++|+++..++........+++++|.+++|||+++..+.+++.+.+++.++++.
T Consensus 218 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~ 296 (497)
T PRK06145 218 TLRIHR-EFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDA 296 (497)
T ss_pred EEEECC-cCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEe
Confidence 998876 4678899999999999999999999999987755555667899999999999999999999988888899999
Q ss_pred cccccccceeccCCc-CCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccccccc
Q 005501 504 CGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (693)
Q Consensus 504 YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~ 577 (693)
||+||++...+.... ......+++|+|+++++++|+|++++++|.|+. |||++ ..||++ +++.+++
T Consensus 297 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~--Gel~v~g~~~~~Gy~~------~~~~~~~ 368 (497)
T PRK06145 297 YGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLPPNMK--GEICMRGPKVTKGYWK------DPEKTAE 368 (497)
T ss_pred ecCcccCCcceeccCccccccCCCcccCCCCceEEEECCCCCCCCCCCc--eEEEEECcchhhhhcC------ChHHHHH
Confidence 999999875443322 122345689999999999999999999999984 99998 457776 4456666
Q ss_pred cccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEE
Q 005501 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (693)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 657 (693)
.|.. .||+|||+|++++||+++++||+||+||++|++|+|.|||++|. .+|+|.+++|++.+++..+ +.++
T Consensus 369 ~~~~-------~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~ 439 (497)
T PRK06145 369 AFYG-------DWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIY-ELPEVAEAAVIGVHDDRWG-ERIT 439 (497)
T ss_pred HHhC-------CCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHH-hCCCeeEEEEEecCCCccC-ceEE
Confidence 6642 39999999999999999999999999999999999999999995 9999999999999888777 8899
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
+++++.++...+.++|+++++++|+.|+.|..++.
T Consensus 440 ~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 474 (497)
T PRK06145 440 AVVVLNPGATLTLEALDRHCRQRLASFKVPRQLKV 474 (497)
T ss_pred EEEEECCCCCCCHHHHHHHHHHhhhcCCCCCEEEE
Confidence 99999876667788999999999999999988765
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-60 Score=532.39 Aligned_cols=486 Identities=19% Similarity=0.199 Sum_probs=375.9
Q ss_pred CCcCCCCccchhhhhccCcccCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCC
Q 005501 165 GTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243 (693)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s 243 (693)
++|......+....++... ++++|+++|+++.+.. +.+||+||.++++++|++|.+. +++||+|+|+++|+
T Consensus 7 ~~~~~~~~~~~l~~~l~~~--a~~~p~~~ai~~~~~~------~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~ 78 (534)
T PRK05852 7 AAPMASDFGPRIADLVEVA--ATRLPEAPALVVTADR------IAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSN 78 (534)
T ss_pred ccchhhhhcccHHHHHHHH--HHhCCCCcEEEecCCC------CcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCc
Confidence 3454444444344445443 3689999999875431 3799999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCC
Q 005501 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI 323 (693)
Q Consensus 244 ~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (693)
+++++++|||+++|++++|++|.++.+++.+++++++++++|++........ .. ... .....+.+......
T Consensus 79 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-~~----~~~-~~~~~~~~~~~~~~--- 149 (534)
T PRK05852 79 AEFVVALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRA-EP----TTR-WWPLTVNVGGDSGP--- 149 (534)
T ss_pred HHHHHHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhc-cc----ccc-ccceeeeecccccc---
Confidence 9999999999999999999999999999999999999999999864221000 00 000 00011111110000
Q ss_pred CCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEe
Q 005501 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWP 403 (693)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~ 403 (693)
....... ........ . ..........+++++|+|||||||.||||+++|+++.+.+......+++..+|+++++
T Consensus 150 --~~~~~~~-~~~~~~~~--~-~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 223 (534)
T PRK05852 150 --SGGTLSV-HLDAATEP--T-PATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAV 223 (534)
T ss_pred --ccccccc-ccccccCC--C-ccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCcceEEEe
Confidence 0000000 00000000 0 0001111224778999999999999999999999999888888788899999999999
Q ss_pred CCccccchh-HHHHHHHHcCCEEEEecC-CCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCC--CCCCccccEEEee
Q 005501 404 TNLGWVMGP-VILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE--GLDWTKIRSFAST 479 (693)
Q Consensus 404 ~~~~~~~~~-~~~~~~L~~G~~lvi~~~-~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~~lr~v~~g 479 (693)
.|+.|..++ ..++.+++.|+++++.+. ..++..+++.|+++++|.+.++|+++..|.+..... ..+++++|.++++
T Consensus 224 ~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~ 303 (534)
T PRK05852 224 MPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSC 303 (534)
T ss_pred cCcchhHHHHHHHHHHHhcCCeEEeCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEEC
Confidence 999999988 457888899999888653 456789999999999999999999999998754321 2346799999999
Q ss_pred cCCCCcchHHHHHhhCCCCceecccccccccceeccCCcC-------CCCccCccCCCCCCceEEEECCCCCCCCCCCCc
Q 005501 480 GETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-------QPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 552 (693)
Q Consensus 480 Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~-------~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~g 552 (693)
|+++++.+.+++.+.+ +.++++.||+||++...+..... .....+..|+ .+|++++|+|++|++++.|+.
T Consensus 304 G~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d~~g~~~~~g~~- 380 (534)
T PRK05852 304 SAPLTAETAQALQTEF-AAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVGSDGLPLPAGAV- 380 (534)
T ss_pred CCCCCHHHHHHHHHHh-CCChhhccCccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEECCCCCCCCCCCc-
Confidence 9999999999988776 58899999999998654432221 0112234444 799999999999999999985
Q ss_pred eeeEEE-----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHH
Q 005501 553 VGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627 (693)
Q Consensus 553 iGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eI 627 (693)
|||++ ..||++ +++.|++.|.. | ||+|||+|++|+||++++.||.||+||++|.+|+|.||
T Consensus 381 -Gel~v~g~~v~~gY~~------~~~~t~~~~~~-----g--~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~i 446 (534)
T PRK05852 381 -GEVWLRGTTVVRGYLG------DPTITAANFTD-----G--WLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERV 446 (534)
T ss_pred -eEEEEecCcccchhcC------CcccchhhhcC-----C--CcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHH
Confidence 99998 457776 45566666641 3 99999999999999999999999999999999999999
Q ss_pred HHHHhccCcccceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 628 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 628 E~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
|++|. .||+|.+|+|+++++...+ +.++++|+.+++...+.+++.++++++||.|++|..++.
T Consensus 447 E~~l~-~~~~V~~~~v~g~~~~~~g-~~~~~~vv~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~ 509 (534)
T PRK05852 447 EGVLA-SHPNVMEAAVFGVPDQLYG-EAVAAVIVPRESAPPTAEELVQFCRERLAAFEIPASFQE 509 (534)
T ss_pred HHHHH-hCCCeeeEEEEecCCcCcC-ceEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEE
Confidence 99995 9999999999999988777 899999998776557789999999999999999998765
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-60 Score=530.25 Aligned_cols=466 Identities=18% Similarity=0.207 Sum_probs=375.4
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++.+|+++|+++.+. ++||+||.++++++|.+|.+. +++|++|+++++|++++++++|||+++|+++++++
T Consensus 33 a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~ 104 (527)
T TIGR02275 33 AARYPDAIAIICGNR--------QWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKLGIAPVLAL 104 (527)
T ss_pred HHHCCCceEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHcCeEEeccc
Confidence 468999999998766 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC-ceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (693)
+.++.+++..+++.+++++++++..... .........+....+. ..+.+..... ..............
T Consensus 105 ~~~~~~~~~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-- 173 (527)
T TIGR02275 105 FSHRKSELTAYAQQIEPALYIIDRAHSL-FDYDAFARQLQSKLPTLRNIIVAGQTR--------VEAELFLWLESPAE-- 173 (527)
T ss_pred cccCHHHHHHHHHhcCCcEEEEcCcccc-cchHHHHHHHHhhCCcceEEEEecCCC--------CcchhhHHhhCcCc--
Confidence 9999999999999999999999865310 0000011111111111 1111111000 00011111111111
Q ss_pred CCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhH--HHHHHHHc
Q 005501 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLN 421 (693)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~L~~ 421 (693)
........++++|+|+|||||||.||||+++|+++...+......+.++.+|++++.+|++|.+++. .++.++..
T Consensus 174 ---~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~ 250 (527)
T TIGR02275 174 ---PVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYA 250 (527)
T ss_pred ---cccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhc
Confidence 1112244678999999999999999999999999998888777788899999999999999988874 47889999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCcee
Q 005501 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (693)
Q Consensus 422 G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (693)
|+++++.+ ..++..+++.++++++|++.++|+++..|.+.......+++++|.+++||++++.++.+++.+.+ +.+++
T Consensus 251 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~ 328 (527)
T TIGR02275 251 GGCVVLAP-DPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVF-GCQLQ 328 (527)
T ss_pred CCeEEECC-CCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHh-CCeEE
Confidence 99998865 46788899999999999999999999999876555556688999999999999999999888776 58999
Q ss_pred cccccccccceeccCCcCCCCccCccCCCC-CCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccccc
Q 005501 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHE 575 (693)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t 575 (693)
+.||+||++.++...........+++|+|+ ++..++|+|++|++++.|+. |||++ ..||++ +++.+
T Consensus 329 ~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~--Gei~v~g~~~~~gY~~------~~~~~ 400 (527)
T TIGR02275 329 QVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGET--GMLLTRGPYTFRGYYK------APEHN 400 (527)
T ss_pred eeeccCccCccccCCCCccccccccCCCCCCCCceEEEECCCCCCCCCCCc--eEEEecCCccchhhcC------ChhHh
Confidence 999999976543322222223446889999 58999999999999999985 99998 456766 44466
Q ss_pred cccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceE
Q 005501 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (693)
Q Consensus 576 ~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~ 655 (693)
.+.|..+ +||+|||+|++++||++++.||.||+||++|++|+|.|||++|. .||+|.+|+|++.++...+ +.
T Consensus 401 ~~~~~~d------g~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~~-~~ 472 (527)
T TIGR02275 401 AAAFDAE------GFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLL-AHPAVHDAALVSMPDELLG-EK 472 (527)
T ss_pred HhhcCcC------CCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHH-hCCCceEEEEEecCCcccc-cE
Confidence 6666533 39999999999999999999999999999999999999999995 9999999999999988777 89
Q ss_pred EEEEEEecCCCCCChHHHHHHHHHH-HHhhcCCCceec
Q 005501 656 LVIFVVLKKGFTSQPDKLKMIFSKA-IQSKLNPLFKVW 692 (693)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~-L~~~m~P~~~v~ 692 (693)
+++||+++++ ..+..+|+++++++ |+.|+.|..++.
T Consensus 473 ~~a~vv~~~~-~~~~~~l~~~l~~~~l~~~~~P~~i~~ 509 (527)
T TIGR02275 473 SCAFIVVRDP-ALKAAQLRRFLRERGLAEYKLPDRVEF 509 (527)
T ss_pred EEEEEEECCC-CCCHHHHHHHHHhCCCccccCCCEEEE
Confidence 9999998765 46778999999985 999999988765
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=566.86 Aligned_cols=462 Identities=15% Similarity=0.108 Sum_probs=352.2
Q ss_pred ccCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 005501 184 NHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (693)
Q Consensus 184 ~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vp 262 (693)
.+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|
T Consensus 455 ~~a~~~pd~~Al~~~~~--------~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vp 526 (994)
T PRK07868 455 EQARDAPKGEFLLFDGR--------VHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVL 526 (994)
T ss_pred HHHHHCCCCeEEEeCCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEE
Confidence 35678999999998766 999999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCC--CCcccHHHHhcccC
Q 005501 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLR--EQDLSWKDFLSSVD 340 (693)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 340 (693)
+||. +++.++++++++++||++.... ..+.+ ....++++..... ...... .....+++......
T Consensus 527 l~p~---~~l~~il~~s~~~~li~~~~~~---------~~~~~-~~~~iiv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 592 (994)
T PRK07868 527 MPPD---TDLAAAVRLGGVTEIITDPTNL---------EAARQ-LPGRVLVLGGGES-RDLDLPDDADVIDMEKIDPDAV 592 (994)
T ss_pred eCCc---hhHHHHHhccCCeEEEEChHHH---------HHHHh-cCceEEEecCCcc-ccccCCcchhhhhhhhcCcccc
Confidence 9985 6899999999999999986432 11111 2233444432110 000000 00111111111000
Q ss_pred CCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHH
Q 005501 341 YHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420 (693)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~ 420 (693)
. .+.........++|+|||+|| ||||.||++.++|.+...........++++++|++++.+|++|+++++..+.+++
T Consensus 593 ~--~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l 669 (994)
T PRK07868 593 E--LPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAV 669 (994)
T ss_pred c--CCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHh
Confidence 0 000011112236899999999 5777788888888765444444445678899999999999999999977666666
Q ss_pred cCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCce
Q 005501 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (693)
Q Consensus 421 ~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (693)
.|++.+++....+++.+++.|++++||++.++|++++.|++.......++++||.++ |+.+++++.+++.+.++.+++
T Consensus 670 ~gG~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l 747 (994)
T PRK07868 670 VGGSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHV 747 (994)
T ss_pred ccceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEe--cCCCCHHHHHHHHHHhCchhe
Confidence 666655555567899999999999999999999999999876443444577899876 334899999999888877899
Q ss_pred ecccccccccceeccCCcCCCCccCccCCCCCCc-eEEEE-----------CCCC--CCCCCCCCceeeEEE-ecccCCC
Q 005501 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTA-GLVIL-----------DECG--VPYPDDQPCVGEVGL-FPLYLGA 565 (693)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~il-----------d~~~--~~~p~G~~giGel~v-~~gy~~~ 565 (693)
+|.||+||++.... .. .....+++|+|++|+ +++|. |++| ++++.|++ |||++ +++|++
T Consensus 748 ~~~YG~TE~~~~~~-~~--~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~--Gel~~~~~~~~~- 821 (994)
T PRK07868 748 VEFFATTDGQAVLA-NV--SGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEV--GVLLARARGPID- 821 (994)
T ss_pred eeeeeccccccccc-cc--CCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCc--eEEEEecCCCCC-
Confidence 99999999875432 21 123557899999998 56553 5566 66888885 99998 455542
Q ss_pred ccccccccc--ccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEE
Q 005501 566 SDRLLNADH--EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAA 643 (693)
Q Consensus 566 ~~~~~~~~~--t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~V 643 (693)
++. +..+|. ++++||+|||+|++|+||+|+|+||.|||||++|.+|+|.|||++|. +||+|.+|+|
T Consensus 822 ------p~~t~~~~~~~-----~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~-~hp~V~~aaV 889 (994)
T PRK07868 822 ------PTASVKRGVFA-----PADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALG-RIGGVDLAVT 889 (994)
T ss_pred ------hhhhhHhcccc-----cCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHh-cCCCeeEEEE
Confidence 222 223342 25679999999999999999999999999999999999999999995 9999999999
Q ss_pred EeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceecC
Q 005501 644 ISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 644 v~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~~ 693 (693)
++++++. + +.++|||+++++...+.++|+++|++ ||.||+|..++++
T Consensus 890 vg~~d~~-~-~~~~a~Vv~~~~~~~~~~~L~~~l~~-l~~y~vP~~i~~v 936 (994)
T PRK07868 890 YGVEVGG-R-QLAVAAVTLRPGAAITAADLTEALAS-LPVGLGPDIVHVV 936 (994)
T ss_pred EeecCCC-C-ceEEEEEEeCCCCcCCHHHHHHHHHh-CCCCcCCeEEEEe
Confidence 9998865 4 78999999988777888999999986 9999999988753
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=543.54 Aligned_cols=465 Identities=20% Similarity=0.187 Sum_probs=357.3
Q ss_pred CCCCCCcEEEEEecCCC-CCCcceeecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec-
Q 005501 186 RRKEDNTVAIVWREDRC-DESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI- 263 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~-~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl- 263 (693)
++++|+++|+++.+... ..+.++.+||+||.++++++|++|.+.+++||+|+++++|++++++++|||+++|++++|+
T Consensus 44 ~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~~~gd~V~l~~~n~~e~~~~~lA~~~aG~v~vpl~ 123 (612)
T PRK12476 44 IANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQVAGPGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLF 123 (612)
T ss_pred HHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCChhHHHHHHHHHHcCceeEecC
Confidence 36789999999754210 1123458999999999999999998769999999999999999999999999999999999
Q ss_pred CCCCC--HHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCC----CceEEEcCCCCCCCCCCCCCcccHHHHhc
Q 005501 264 ADSFA--AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (693)
Q Consensus 264 ~p~~~--~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (693)
++.++ .+++.+++++++++++|+++... +.+.......+ ..++.+.... .
T Consensus 124 ~~~~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~------------------~ 179 (612)
T PRK12476 124 APELPGHAERLDTALRDAEPTVVLTTTAAA------EAVEGFLRNLPRLRRPRVIAIDAIP------------------D 179 (612)
T ss_pred CCCcchhHHHHHHHHHhCCCCEEEEcHHHH------HHHHHHHhhcccccCceEEEecccc------------------c
Confidence 68877 88999999999999999986532 11111111111 1122221100 0
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcC-CCCCCEEEEeCCccccchhHHHH
Q 005501 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-LKVGDVYCWPTNLGWVMGPVILF 416 (693)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~d~~l~~~~~~~~~~~~~~~ 416 (693)
... .........+++++||+|||||||+||||+++|+++.+.+......++ +.+++++++++|++|+.++..++
T Consensus 180 ~~~-----~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~~ 254 (612)
T PRK12476 180 SAG-----ESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMIG 254 (612)
T ss_pred ccc-----ccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhccCCCCceEEEeCCcccccchHHHH
Confidence 000 011112345689999999999999999999999999877766666677 78899999999999999997777
Q ss_pred HHHHcCCEEEEecC-CC--ChhhHHHHHH--HcCCcEEeechHHHHHHHhcCc----CCCCCCccccEEEeecCCCCcch
Q 005501 417 SSFLNGATLALYQG-SP--LERSFGKFVQ--DAGVTVLGTVPSLVKAWRNTNC----LEGLDWTKIRSFASTGETSNVDD 487 (693)
Q Consensus 417 ~~L~~G~~lvi~~~-~~--~~~~~~~~i~--~~~vt~l~~~P~~l~~l~~~~~----~~~~~l~~lr~v~~gGe~l~~~~ 487 (693)
.+++.|+++++..+ .+ ++..+++.++ ++++|++..+|+++..++.... ....+++++| +++||+++++++
T Consensus 255 ~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~ 333 (612)
T PRK12476 255 FPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDA 333 (612)
T ss_pred HHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHH
Confidence 77777887777653 22 6788999995 5899999999999887775321 1234678999 999999999999
Q ss_pred HHHHHhhCC-----CCceecccccccccceeccCCcCCC--------------------------CccCccCCCCCCceE
Q 005501 488 DLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP--------------------------QAFGAFSTATMTAGL 536 (693)
Q Consensus 488 ~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~--------------------------~~~~~iG~p~~~~~~ 536 (693)
.+++.+.++ ...++|.||+||++..++...+... ...+++|+|++|+++
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v 413 (612)
T PRK12476 334 VTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWA 413 (612)
T ss_pred HHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEE
Confidence 888887652 2459999999998765433221100 012478999999999
Q ss_pred EEECCC-CCCCCCCCCceeeEEE-----ecccCCCccccccccccccccccccc------------CCCceeeeecceEE
Q 005501 537 VILDEC-GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPM------------YKGMCLRRHGDIIK 598 (693)
Q Consensus 537 ~ild~~-~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~------------~~g~~~yrTGDl~~ 598 (693)
+|+|++ |+++|.|+. |||++ +.||++ +++.|++.|...+. .++.+||+|||+|+
T Consensus 414 ~ivd~~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~ 485 (612)
T PRK12476 414 VIVDPDTGAELPDGEV--GEIWLHGDNIGRGYWG------RPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGV 485 (612)
T ss_pred EEEeCCCCcCCCCCCE--EEEEEcCCcccccccC------ChHHHHHHHhhhhccccccccccccccCCCCeeeccccce
Confidence 999988 999999994 99998 457776 55678888853110 12356999999999
Q ss_pred EecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccce--eEEEeecCCCCCceEEEEEEEecCCC-CCChHHHHH
Q 005501 599 RTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE--TAAISVSPAGGGPEVLVIFVVLKKGF-TSQPDKLKM 675 (693)
Q Consensus 599 ~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~--a~Vv~~~~~~~g~~~l~a~vv~~~~~-~~~~~~l~~ 675 (693)
++ ||+|+|+||+||+||++|+||+|.|||++|.+.||.|.+ ++|++++++. + +.++++|+++++. ..+.++|.+
T Consensus 486 ~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~l~~ 562 (612)
T PRK12476 486 YL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-N-ERLVIVAERAAGTSRADPAPAID 562 (612)
T ss_pred eE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-c-ceEEEEEEecCCcccccHHHHHH
Confidence 85 999999999999999999999999999999535899999 6777887776 5 8999999988764 357789999
Q ss_pred HHHHHHHh-hcC-CCcee
Q 005501 676 IFSKAIQS-KLN-PLFKV 691 (693)
Q Consensus 676 ~l~~~L~~-~m~-P~~~v 691 (693)
+++++|.. +++ |..+.
T Consensus 563 ~~~~~l~~~~~~~p~~v~ 580 (612)
T PRK12476 563 AIRAAVSRRHGLAVADVR 580 (612)
T ss_pred HHHHHHHHhhCCcceEEE
Confidence 99999995 776 55443
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-60 Score=530.77 Aligned_cols=461 Identities=19% Similarity=0.204 Sum_probs=373.3
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
+++.+|+++|+++.+. .+||+||.++++++|..|.+. +++|++|+++++|++++++++|||+++|++++|+
T Consensus 30 ~a~~~p~~~a~~~~~~--------~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G~~~vpl 101 (542)
T PRK06155 30 QAERYPDRPLLVFGGT--------RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPI 101 (542)
T ss_pred HHHHCCCCeEEEeCCc--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhCCEEEEe
Confidence 3478999999998776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcC-C-CceEEEcCCCCCCCCCCCCCcccHHHHhcccCC
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-P-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (693)
++.++.+++..+++++++++++++..... .+....... . ...+.++.... .. ....|.........
T Consensus 102 ~~~~~~~~l~~~l~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~ 169 (542)
T PRK06155 102 NTALRGPQLEHILRNSGARLLVVEAALLA------ALEAADPGDLPLPAVWLLDAPAS---VS---VPAGWSTAPLPPLD 169 (542)
T ss_pred ccccCHHHHHHHHHhcCceEEEEChhhHH------HHHHhcccccCcceEEEecCccc---cc---cccccchhhhcccC
Confidence 99999999999999999999999875321 111111111 1 12222221110 00 00111111000000
Q ss_pred CCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHc
Q 005501 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (693)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~ 421 (693)
.........++++++|+|||||||.||||+++|+++.+........+++++++++++..|++|..++..++.+++.
T Consensus 170 ----~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~~~~~~l~~ 245 (542)
T PRK06155 170 ----APAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLPLFHTNALNAFFQALLA 245 (542)
T ss_pred ----CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhcCCCCCCEEEEecCHHHHHHHHHHHHHHHc
Confidence 0111223457899999999999999999999999998877777778899999999999999999999888999999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCcee
Q 005501 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (693)
Q Consensus 422 G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (693)
|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.........+++|.++.|| +++.+.+++.+.+ +.+++
T Consensus 246 G~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~-~~~v~ 321 (542)
T PRK06155 246 GATYVLEP-RFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFRERF-GVDLL 321 (542)
T ss_pred CceEEeeC-CCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHHHHc-CCCEE
Confidence 99998876 46789999999999999999999999999877655555567899887666 4677777777765 57899
Q ss_pred cccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEEe--------cccCCCcccccccc
Q 005501 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF--------PLYLGASDRLLNAD 573 (693)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v~--------~gy~~~~~~~~~~~ 573 (693)
|.||+||++.++.... .....+++|.|+++++++|+|++++++|.|+. |||++. .||++ +++
T Consensus 322 ~~YG~tE~~~~~~~~~--~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gei~v~~~~~~~~~~GY~~------~~~ 391 (542)
T PRK06155 322 DGYGSTETNFVIAVTH--GSQRPGSMGRLAPGFEARVVDEHDQELPDGEP--GELLLRADEPFAFATGYFG------MPE 391 (542)
T ss_pred eeecccccCccccCCC--CCCCCCCcCccCCCceEEEECCCCCCCCCCCc--eEEEEecCCccccchhhcC------CHH
Confidence 9999999987654432 23456789999999999999999999999984 999883 34554 344
Q ss_pred cccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCc
Q 005501 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (693)
Q Consensus 574 ~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~ 653 (693)
.++..|. ..||+|||+|++++||+++|+||.||+||++|.+|+|.|||++|. +||+|.+++|+++++...+
T Consensus 392 ~~~~~~~-------~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~~~V~~~~v~~v~~~~~~- 462 (542)
T PRK06155 392 KTVEAWR-------NLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLL-SHPAVAAAAVFPVPSELGE- 462 (542)
T ss_pred HHHHhhc-------CCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHH-hCCCeeEEEEEeecccccC-
Confidence 5555553 239999999999999999999999999999999999999999995 9999999999999987776
Q ss_pred eEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
+.++++++++.+...+..+++++|+++|+.|++|..++.
T Consensus 463 ~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~ 501 (542)
T PRK06155 463 DEVMAAVVLRDGTALEPVALVRHCEPRLAYFAVPRYVEF 501 (542)
T ss_pred ceEEEEEEECCCCCCCHHHHHHHHHhhCcCccCCcEEEE
Confidence 889999998887778889999999999999999998764
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-60 Score=535.86 Aligned_cols=446 Identities=17% Similarity=0.132 Sum_probs=342.6
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p 265 (693)
++++|+++|+++.+. +.++++||+||.++++++|++|.++ ++||+|+|+++|++++++++|||+++|++++ ++|
T Consensus 12 ~~~~~~~~a~~~~~~----~~~~~~ty~el~~~~~~lA~~L~~~-~~g~~V~l~~~~~~e~~~~~la~~~~G~~~~-~~~ 85 (525)
T PRK05851 12 MTASGRDLVVLDRES----GLWRRHPWPEVHGRAENVAARLLDR-DRPGAVGLVGEPTVELVAAIQGAWLAGAAVS-ILP 85 (525)
T ss_pred hcCCCCceEEeCCCC----CcceeecHHHHHHHHHHHHHHHHhc-CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCc-CCC
Confidence 478999999998753 2356999999999999999999987 8999999999999999999999999999875 444
Q ss_pred C--------CCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhc
Q 005501 266 S--------FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (693)
Q Consensus 266 ~--------~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (693)
. ...+++.+++++++++++|++.... ..+.... .. +.+. .+.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~~-~~-~~~~---------------~~~~~~~ 139 (525)
T PRK05851 86 GPVRGADDGRWADATLTRFAGIGVRTVLSHGSHL---------ERLRAVD-SS-VTVH---------------DLATAAH 139 (525)
T ss_pred CCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHH---------HHHHHhh-cc-cccc---------------ccccccc
Confidence 2 2335666789999999999986421 1111100 00 0000 0000000
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCC-CCCEEEEeCCccccchhHHHH
Q 005501 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK-VGDVYCWPTNLGWVMGPVILF 416 (693)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~-~~d~~l~~~~~~~~~~~~~~~ 416 (693)
... .. ......+++++||+|||||||.||||+++|+++.+.+.+....++++ ++|++++++|++|+++++.++
T Consensus 140 ~~~----~~--~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~ 213 (525)
T PRK05851 140 TNR----SA--SLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAATDVGCSWLPLYHDMGLAFLL 213 (525)
T ss_pred ccc----cc--cCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHhCCCCCCCeEEEcCCCccCccHHHHH
Confidence 000 00 01123578999999999999999999999999999888887888898 899999999999999998899
Q ss_pred HHHHcCCEEEEecCC-C--ChhhHHHHHHHcCCcEEeechHHHHHHHhcCc-CCCCCCccccEEEeecCCCCcchHHHHH
Q 005501 417 SSFLNGATLALYQGS-P--LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC-LEGLDWTKIRSFASTGETSNVDDDLWLS 492 (693)
Q Consensus 417 ~~L~~G~~lvi~~~~-~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~-~~~~~l~~lr~v~~gGe~l~~~~~~~~~ 492 (693)
.+++.|+++++.+.. + ++..+++.++++++|++..+|.++..+.+... ....++++||.+++||+++++++.+++.
T Consensus 214 ~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~ 293 (525)
T PRK05851 214 TAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFA 293 (525)
T ss_pred HHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHH
Confidence 999999999997631 2 56789999999999988665555555543221 2344578999999999999999988877
Q ss_pred hhC-----CCCceecccccccccceeccCCcC--------------CCCccCccCCCCCCceEEEECCCC-CCCCCCCCc
Q 005501 493 SKA-----WYNAIIESCGGTELSSAYIQGSLL--------------QPQAFGAFSTATMTAGLVILDECG-VPYPDDQPC 552 (693)
Q Consensus 493 ~~~-----~~~~l~n~YG~TE~~~~~~~~~~~--------------~~~~~~~iG~p~~~~~~~ild~~~-~~~p~G~~g 552 (693)
+.+ +..+++|.||+||++..++...+. .....+++|+|++|++++|+|+++ .++|.|+
T Consensus 294 ~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~-- 371 (525)
T PRK05851 294 TAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGRE-- 371 (525)
T ss_pred HHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCC--
Confidence 542 224599999999998655433211 012346899999999999999876 4689998
Q ss_pred eeeEEE-----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHH
Q 005501 553 VGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627 (693)
Q Consensus 553 iGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eI 627 (693)
+|||++ +.||++++. . ..++||+|||+|+++ ||+|+|+||+||+||++|+||+|.||
T Consensus 372 ~GEl~v~g~~~~~GY~~~~~------~-----------~~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eI 433 (525)
T PRK05851 372 IGEIEIRGASMMSGYLGQAP------I-----------DPDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEI 433 (525)
T ss_pred eEEEEEecCchhhccccCCc------c-----------CCCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHH
Confidence 499998 356665321 1 123499999999996 89999999999999999999999999
Q ss_pred HHHHhccCcccceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhh--cCCCceec
Q 005501 628 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK--LNPLFKVW 692 (693)
Q Consensus 628 E~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~--m~P~~~v~ 692 (693)
|++|. +||+|.+|+|++++++..+ +.++++|+... ...+.++++++++++|+.+ |+|..+.+
T Consensus 434 E~~l~-~~p~V~~~~vv~~~~~~~~-~~~~~~v~~~~-~~~~~~~~~~~~~~~l~~~l~~~P~~~~~ 497 (525)
T PRK05851 434 ERVAA-QVRGVREGAVVAVGTGEGS-ARPGLVIAAEF-RGPDEAGARSEVVQRVASECGVVPSDVVF 497 (525)
T ss_pred HHHHH-hCCCcccceEEEEEecCCC-CceeEEEEEEe-cCcchHHHHHHHHHHHHHHhCCCccEEEE
Confidence 99995 9999999999999987776 67777776542 1245578999999999998 89987654
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-60 Score=528.74 Aligned_cols=467 Identities=21% Similarity=0.216 Sum_probs=390.4
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
+++.+|+++|+.+.++ .+||+||.++++++|+.|.+. +++|++|+++++|++++++++|||+++|++++|+
T Consensus 15 ~~~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~~ 86 (521)
T PRK06187 15 GARKHPDKEAVYFDGR--------RTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPI 86 (521)
T ss_pred HHHHCCCceEEEeCCc--------eEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEec
Confidence 4578999999999887 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCCCCCCCCCcccHHHHhcccCC
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (693)
++.++.+++..+++.+++++++++.... ..+..+.+..+. +++.+...... ........+.++......
T Consensus 87 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 157 (521)
T PRK06187 87 NIRLKPEEIAYILNDAEDRVVLVDSEFV------PLLAAILPQLPTVRTVIVEGDGPAA---PLAPEVGEYEELLAAASD 157 (521)
T ss_pred ccCCCHHHHHHHHHhcCCeEEEEcchHH------HHHHHHhhccCCccEEEEecCcccc---ccccccccHHHHhhcCCc
Confidence 9999999999999999999999997532 222333333322 23333222110 112234556666544322
Q ss_pred CCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHc
Q 005501 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (693)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~ 421 (693)
........++++++++|||||||.||+|.++|+++.+...+....++++++|++++.+|++|..++...+.++..
T Consensus 158 -----~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~ 232 (521)
T PRK06187 158 -----TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLPYLALMA 232 (521)
T ss_pred -----cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhhCCCCCCEEEEeCCchHHhhHHHHHHHHHh
Confidence 112234467899999999999999999999999999888888788999999999999999999998777779999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCcee
Q 005501 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (693)
Q Consensus 422 G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (693)
|+++++++.. ++..+++.++++++|.+.++|++++.|.........+++++|.+++|||+++.++.+++.+.+ +++++
T Consensus 233 G~~~v~~~~~-~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~ 310 (521)
T PRK06187 233 GAKQVIPRRF-DPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKF-GIDLV 310 (521)
T ss_pred CCEEEecCCC-CHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHh-Ccchh
Confidence 9999998864 888999999999999999999999999987665566788999999999999999999998877 78999
Q ss_pred cccccccccceeccCCcCCC-----CccCccCCCCCCceEEEECCCCCCCCC--CCCceeeEEE-----ecccCCCcccc
Q 005501 502 ESCGGTELSSAYIQGSLLQP-----QAFGAFSTATMTAGLVILDECGVPYPD--DQPCVGEVGL-----FPLYLGASDRL 569 (693)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~~-----~~~~~iG~p~~~~~~~ild~~~~~~p~--G~~giGel~v-----~~gy~~~~~~~ 569 (693)
|.||+||++........... ....++|+|++++.++|+|++++++|. |. .|||++ ..||++
T Consensus 311 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~--~Gel~v~~~~~~~~y~~----- 383 (521)
T PRK06187 311 QGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGE--VGEIIVRGPWLMQGYWN----- 383 (521)
T ss_pred eeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECCCCCCCCCCCCC--eeEEEEECcchhhhhcC-----
Confidence 99999999875554433222 256789999999999999999999998 77 499998 345555
Q ss_pred cccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCC
Q 005501 570 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 649 (693)
Q Consensus 570 ~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~ 649 (693)
+++.+...|. .+ ||+|||++++++||.+++.||.||+||++|.+|+|.+||++|. .+|+|.+++|++.+++
T Consensus 384 -~~~~~~~~~~-----~~--~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~ 454 (521)
T PRK06187 384 -RPEATAETID-----GG--WLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALY-GHPAVAEVAVIGVPDE 454 (521)
T ss_pred -CHHHHHHHhh-----CC--ceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHH-hCCCceEEEEEeccCC
Confidence 3334554553 23 9999999999999999999999999999999999999999995 9999999999999887
Q ss_pred CCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 650 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 650 ~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
..+ +.++++++++++...+..+++++++++|+.++.|..++.
T Consensus 455 ~~~-~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~ 496 (521)
T PRK06187 455 KWG-ERPVAVVVLKPGATLDAKELRAFLRGRLAKFKLPKRIAF 496 (521)
T ss_pred CcC-ceEEEEEEECCCCCCCHHHHHHHHHHhccCCCCceEEEE
Confidence 777 899999999887767889999999999999999998875
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=529.33 Aligned_cols=470 Identities=19% Similarity=0.216 Sum_probs=371.4
Q ss_pred CCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 005501 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (693)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p 265 (693)
..+|+.+++.+... +..+.+||.||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++|
T Consensus 21 ~~~~~~~~~~~~~~----~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~~~v~l~~ 96 (539)
T PRK07008 21 RHAGDTEIVSRRVE----GDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGAVCHTINP 96 (539)
T ss_pred hhCCCceEEEeecc----CcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeeccc
Confidence 57788888765322 1234899999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCC
Q 005501 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (693)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (693)
.++.+++..+++++++++++++..+. +....+...... .++.+..... .... .....+++++......
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~~~~~~-- 166 (539)
T PRK07008 97 RLFPEQIAYIVNHAEDRYVLFDLTFL------PLVDALAPQCPNVKGWVAMTDAAH-LPAG-STPLLCYETLVGAQDG-- 166 (539)
T ss_pred ccCHHHHHHHHhccCCcEEEEcchhH------HHHHHHHhhCCCceEEEEEccCCc-cccC-CcccccHHHHhcccCC--
Confidence 99999999999999999999987532 112222222221 1222221111 0000 1124556666543221
Q ss_pred CCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHH--HHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHc
Q 005501 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCT--AEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (693)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~ 421 (693)
........++++++++|||||||.||||+++|++++... ......+++.++|+++...|++|.++...++.++..
T Consensus 167 ---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~ 243 (539)
T PRK07008 167 ---DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPYSAPLT 243 (539)
T ss_pred ---CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHHHHHHHHhc
Confidence 111223456889999999999999999999999976432 233346778899999999999888777666788999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCcee
Q 005501 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (693)
Q Consensus 422 G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (693)
|+++++.+...++..+++.++++++|++.++|+++..|++.......++++||.+++||+++++.+.+++.+.+ +.+++
T Consensus 244 G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~l~ 322 (539)
T PRK07008 244 GAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEY-GVEVI 322 (539)
T ss_pred CceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHh-CCcee
Confidence 99999987667889999999999999999999999999876555556788999999999999999999887776 68999
Q ss_pred cccccccccceeccCCcC------CC----CccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEEe-----cccCCCc
Q 005501 502 ESCGGTELSSAYIQGSLL------QP----QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGAS 566 (693)
Q Consensus 502 n~YG~TE~~~~~~~~~~~------~~----~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v~-----~gy~~~~ 566 (693)
+.||+||++...+..... .. ....++|+|++|++++|+|++++++|.+...+|||++. .||++.+
T Consensus 323 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~ 402 (539)
T PRK07008 323 HAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGD 402 (539)
T ss_pred cccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECCCCCccCCCCCcceEEEEeCCccchhhcCCh
Confidence 999999998644332211 00 11357899999999999999999998643225999983 4566532
Q ss_pred ccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEee
Q 005501 567 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV 646 (693)
Q Consensus 567 ~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~ 646 (693)
. .++..| ||+|||+|++++||++++.||+||+||++|++|+|.|||++|. .||+|.+++|+++
T Consensus 403 ~--------------~~~~~g--~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~v~~~~v~~~ 465 (539)
T PRK07008 403 A--------------SPLVDG--WFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAV-AHPAVAEAACIAC 465 (539)
T ss_pred h--------------hhhcCC--CcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHH-hCCceeEEEEEec
Confidence 1 122223 9999999999999999999999999999999999999999995 9999999999999
Q ss_pred cCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 647 SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
++...+ +.++++|+..++...+.++++++++++|+.|+.|..++.
T Consensus 466 ~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~ 510 (539)
T PRK07008 466 AHPKWD-ERPLLVVVKRPGAEVTREELLAFYEGKVAKWWIPDDVVF 510 (539)
T ss_pred CCchhc-cceEEEEEeCCCCccCHHHHHHHHHhhcccccCCeEEEE
Confidence 987777 889999998876667788999999999999999998764
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-60 Score=530.37 Aligned_cols=461 Identities=21% Similarity=0.207 Sum_probs=373.2
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++++|+++|+++.+. ++||+||.++++++|+.|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 17 a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~v~l~ 88 (528)
T PRK07470 17 ARRFPDRIALVWGDR--------SWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTN 88 (528)
T ss_pred HHHCCCceEEEECCc--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCCeEEEecC
Confidence 368999999998766 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCCCCCCCCCcccHHHHhcccCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (693)
+.++.+++..+++++++++++++..... ....+.+.... .++.+... ....++.++......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~- 152 (528)
T PRK07470 89 FRQTPDEVAYLAEASGARAMICHADFPE------HAAAVRAASPDLTHVVAIGGA---------RAGLDYEALVARHLG- 152 (528)
T ss_pred ccCCHHHHHHHHHhcCceEEEEcchhHH------HHHHHHhhCCcCceEEEeCCC---------cccccHHHHHhcCCC-
Confidence 9999999999999999999999875321 11111111111 12222110 012355665543221
Q ss_pred CCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchh--cCCCCCCEEEEeCCccccchhHHHHHHHH
Q 005501 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWPTNLGWVMGPVILFSSFL 420 (693)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~L~ 420 (693)
.........++++++|+|||||||.||||+++|+++...+...... .+++.+|+++.+.|++|++++..++ .++
T Consensus 153 ---~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~-~~~ 228 (528)
T PRK07470 153 ---ARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLC-QVA 228 (528)
T ss_pred ---CCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHHH-HHh
Confidence 1112233467899999999999999999999999986554433222 2567889999999999999986654 678
Q ss_pred cCCEEEEecC-CCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCc
Q 005501 421 NGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (693)
Q Consensus 421 ~G~~lvi~~~-~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (693)
.|++.++++. ..+++.+++.|+++++|++.++|++++.+.+.......+++++|.+++||+++++....++.+.+ +..
T Consensus 229 ~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~ 307 (528)
T PRK07470 229 RGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKL-GKV 307 (528)
T ss_pred cCceEEEecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHh-CcH
Confidence 8888877753 45788999999999999999999999999877555556788999999999999999888877665 468
Q ss_pred eecccccccccceeccCCcC-------CCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcc
Q 005501 500 IIESCGGTELSSAYIQGSLL-------QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASD 567 (693)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~-------~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~ 567 (693)
+++.||+||++..++..... .....+++|+|++|++++|+|++|++++.|+. |||++ ..||++
T Consensus 308 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~--Gel~i~~~~~~~gy~~--- 382 (528)
T PRK07470 308 LVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGET--GEICVIGPAVFAGYYN--- 382 (528)
T ss_pred HHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECCCCCCCCCCCc--eEEEEeCCccchhhcC---
Confidence 99999999998755433221 12234688999999999999999999999984 99998 456766
Q ss_pred cccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeec
Q 005501 568 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647 (693)
Q Consensus 568 ~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~ 647 (693)
+++.++..|. +.||+|||+|++++||+++++||.||+||++|+||+|.|||++|. .+|+|.+|+|++.+
T Consensus 383 ---~~~~~~~~~~-------~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~ 451 (528)
T PRK07470 383 ---NPEANAKAFR-------DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLL-THPAVSEVAVLGVP 451 (528)
T ss_pred ---CHHHHHhhhc-------CCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHH-hCCCceEEEEEecc
Confidence 3445555553 239999999999999999999999999999999999999999995 99999999999999
Q ss_pred CCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 648 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 648 ~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
++..+ +.++++++..++...+.++++++|+++||.|++|..++.
T Consensus 452 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~P~~~~~ 495 (528)
T PRK07470 452 DPVWG-EVGVAVCVARDGAPVDEAELLAWLDGKVARYKLPKRFFF 495 (528)
T ss_pred CcccC-ceeEEEEEECCCCCCCHHHHHHHHHHhhhcCCCCcEEEE
Confidence 88777 889999998877667889999999999999999998764
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-59 Score=525.98 Aligned_cols=470 Identities=17% Similarity=0.183 Sum_probs=375.7
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++++|+++|+++.+. .+.++.+||+||.++++++|++|.++ +++||+|+++++|++++++++|||+++|++++|++
T Consensus 17 a~~~p~~~a~~~~~~---~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~G~~~v~l~ 93 (517)
T PRK08008 17 ADVYGHKTALIFESS---GGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPIN 93 (517)
T ss_pred HHHCCCceEEEcccC---CCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEEcC
Confidence 478999999998653 13345899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcC---CCceEEEcCCCCCCCCCCCCCcccHHHHhcccCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (693)
|.++.+++.++++++++++++++.... +.+..+.+.. ...+++..... .......++.+.......
T Consensus 94 ~~~~~~~l~~~l~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 162 (517)
T PRK08008 94 ARLLREESAWILQNSQASLLVTSAQFY------PMYRQIQQEDATPLRHICLTRVAL-----PADDGVSSFTQLKAQQPA 162 (517)
T ss_pred cccCHHHHHHHHHhcCceEEEEecchh------HHHHHHHhhccccCcEEEEecCCC-----cccccccCHHHHhccCCc
Confidence 999999999999999999999987532 2222222211 11222222110 011123345544332221
Q ss_pred CCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchh-HHHHHHHH
Q 005501 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFL 420 (693)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~ 420 (693)
.........++++++|+|||||||.||||+++|+++............+..++++++.+|+.|..+. ..++.++.
T Consensus 163 ----~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~ 238 (517)
T PRK08008 163 ----TLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFS 238 (517)
T ss_pred ----cccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHh
Confidence 0011223456899999999999999999999999987654433334567889999999999887655 66888999
Q ss_pred cCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCce
Q 005501 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (693)
Q Consensus 421 ~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (693)
.|+++++.+ ..++..+++.++++++|++.++|++++.+............+++.+.+++ +++......+.+.+ ++++
T Consensus 239 ~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~~ 315 (517)
T PRK08008 239 AGATFVLLE-KYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYL-NLSDQEKDAFEERF-GVRL 315 (517)
T ss_pred cCcEEEEcc-ccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEec-CCCHHHHHHHHHHh-CCeE
Confidence 999999987 56788999999999999999999999998866443333356788877754 67777777777665 6899
Q ss_pred ecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEEe--------cccCCCccccccc
Q 005501 501 IESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF--------PLYLGASDRLLNA 572 (693)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v~--------~gy~~~~~~~~~~ 572 (693)
++.||+||++..++...........++|+|+++++++|+|+++++++.|+. |||++. .||++ ++
T Consensus 316 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~~~~gy~~------~~ 387 (517)
T PRK08008 316 LTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEI--GEICIKGVPGKTIFKEYYL------DP 387 (517)
T ss_pred EeeccccccccccccCCccccccCCccccCCCCcEEEEECCCCCCCCCCCc--ceEEEeCCCCcchhhhHhC------Ch
Confidence 999999999865554444444456789999999999999999999999995 999983 25555 55
Q ss_pred ccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCC
Q 005501 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652 (693)
Q Consensus 573 ~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g 652 (693)
+.+++.|..+. ||+|||+|++++||+++|+||.||+||++|++|+|.|||++|. .||+|.+++|+++++...+
T Consensus 388 ~~~~~~~~~~g------~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~-~~~~v~~~~v~g~~~~~~~ 460 (517)
T PRK08008 388 KATAKVLEADG------WLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIA-THPKIQDIVVVGIKDSIRD 460 (517)
T ss_pred HHHhhcccCCC------CeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHH-hCCceeeEEEEccCCCCCC
Confidence 57777776432 9999999999999999999999999999999999999999995 9999999999999988776
Q ss_pred ceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
+.++++|+++++...+.++++++++++|+.|++|..++.
T Consensus 461 -~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~ 499 (517)
T PRK08008 461 -EAIKAFVVLNEGETLSEEEFFAFCEQNMAKFKVPSYLEI 499 (517)
T ss_pred -ceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCcEEEE
Confidence 899999999987667778999999999999999998765
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-60 Score=541.83 Aligned_cols=443 Identities=15% Similarity=0.138 Sum_probs=336.5
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHh---h-cCCC-----------CEEEEEcCCCHHHHHH
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT---M-FSKG-----------DAIAIDMPMTVRAVII 249 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~---~-v~~g-----------d~V~i~~~~s~~~vva 249 (693)
+++++|+++|+++... +..++.+||+||.++++++|++|.+ + +++| |+|+|+++|+++|+++
T Consensus 70 ~~~~~p~~~Al~~~~~---g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N~~ew~~~ 146 (746)
T PTZ00342 70 KYKLNNNKIAIVEHSC---GEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSNSINWLVA 146 (746)
T ss_pred HHhhcCCceeEeccCC---CCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCCCHHHHHH
Confidence 3478999999986422 1134689999999999999999996 6 9998 9999999999999999
Q ss_pred HHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCC------
Q 005501 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDV------ 321 (693)
Q Consensus 250 ~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------ 321 (693)
.+||+++|++.||+++.++.+++.++|+++++++|+++.... +.+..+....+. .+++++......
T Consensus 147 ~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~------~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~ 220 (746)
T PTZ00342 147 DLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLV------EGLLERKNELPHLKKLIILDTLIKSKEININK 220 (746)
T ss_pred HHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHH------HHHHHhhccCCCceEEEEECCCCccccccccc
Confidence 999999999999999999999999999999999999976432 122222222332 234443211000
Q ss_pred -----------CCCC-------------------------------------------CCCcccHHHHhcccCCCCCCCC
Q 005501 322 -----------GIPL-------------------------------------------REQDLSWKDFLSSVDYHPRPNY 347 (693)
Q Consensus 322 -----------~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 347 (693)
.... ......|+++..... ..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~ 295 (746)
T PTZ00342 221 EEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKT-----TN 295 (746)
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcc-----cC
Confidence 0000 000011222211110 11
Q ss_pred CCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhc--CCCCCCEEEEeCCccccchhHHHHHHHHcCCEE
Q 005501 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI--DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATL 425 (693)
Q Consensus 348 ~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~--~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~l 425 (693)
.......++|+|+|+|||||||.||||++||+|+++.+....... .....|++++++|++|.++....+.+++.|+++
T Consensus 296 ~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~i 375 (746)
T PTZ00342 296 YKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGTI 375 (746)
T ss_pred CCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCEE
Confidence 112334679999999999999999999999999988776543321 233568999999999999987777889999999
Q ss_pred EEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhc--------CcCCC------------------------------
Q 005501 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT--------NCLEG------------------------------ 467 (693)
Q Consensus 426 vi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~--------~~~~~------------------------------ 467 (693)
++.+. ++..+++.|+++++|++.++|.++..|... .....
T Consensus 376 ~~~~~--~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~ 453 (746)
T PTZ00342 376 NIWSK--DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISS 453 (746)
T ss_pred EEeCC--CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 99864 678999999999999999999999988652 10000
Q ss_pred ----CCCccccEEEeecCCCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCccCccCCCC-CCceEEEEC-C
Q 005501 468 ----LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILD-E 541 (693)
Q Consensus 468 ----~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~ild-~ 541 (693)
...++||.+++||+++++++.+++...+ +++++++||+||+++..+...+ .....+++|+|+ |+++++|+| +
T Consensus 454 kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt~~~~~~~~~-~~~~~gsvG~p~~pg~e~ki~d~~ 531 (746)
T PTZ00342 454 KIKDKVNPNLEVILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTETTGPIFVQHA-DDNNTESIGGPISPNTKYKVRTWE 531 (746)
T ss_pred HHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcccceeeeccC-CCCCcccccCcCCCcEEEEEeccc
Confidence 0025899999999999999999988765 6899999999999865544333 334568999998 999999998 4
Q ss_pred CCCCCCCCCCceeeEEE-----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccc
Q 005501 542 CGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN 616 (693)
Q Consensus 542 ~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik 616 (693)
++...+.+. .|||++ +.||++ +++.|++.|..+ +||+|||+|++|+||+|+|+||+||+||
T Consensus 532 ~~~~~~~~~--~GEl~vrGp~v~~GY~~------~pe~T~~~f~~d------GW~~TGDig~~d~dG~l~i~gR~kdlIk 597 (746)
T PTZ00342 532 TYKATDTLP--KGELLIKSDSIFSGYFL------EKEQTKNAFTED------GYFKTGDIVQINKNGSLTFLDRSKGLVK 597 (746)
T ss_pred ccccCCCCC--ceEEEEecCcccccccC------ChhhhhhhcCcC------CcccCCcEEEECCCCeEEEEccCCCeEE
Confidence 334434333 389988 456766 666898888643 2999999999999999999999999999
Q ss_pred c-CCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecC
Q 005501 617 L-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 664 (693)
Q Consensus 617 ~-~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~ 664 (693)
+ +|++|+|.|||++|. +||.|.+|+|++... . ..++|.|+++.
T Consensus 598 ls~Ge~I~p~eIE~~l~-~~p~V~~~~VvG~~~---~-~~~~Alvv~d~ 641 (746)
T PTZ00342 598 LSQGEYIETDMLNNLYS-QISFINFCVVYGDDS---M-DGPLAIISVDK 641 (746)
T ss_pred eCCCEEEchHHHHHHHh-cCCCccEEEEEccCC---c-cccEEEEECCH
Confidence 5 799999999999995 999999999998521 1 57999999763
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-59 Score=522.90 Aligned_cols=456 Identities=20% Similarity=0.213 Sum_probs=375.1
Q ss_pred CCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCC
Q 005501 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (693)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~ 266 (693)
.+|+++|+.+.+. +.+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+++.
T Consensus 14 ~~~~~~a~~~~~~-------~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G~~~v~l~~~ 86 (504)
T PRK07514 14 ADRDAPFIETPDG-------LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTA 86 (504)
T ss_pred hCCCCeEEEeCCC-------CEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEECCCC
Confidence 7899999987544 2899999999999999999999 9999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCc-eEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCC
Q 005501 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (693)
Q Consensus 267 ~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (693)
++.+++..+++.++++++++++... .....+....... ++.++... ...+.+......
T Consensus 87 ~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~----- 145 (504)
T PRK07514 87 YTLAELDYFIGDAEPALVVCDPANF------AWLSKIAAAAGAPHVETLDADG----------TGSLLEAAAAAP----- 145 (504)
T ss_pred CCHHHHHHHHHhCCCcEEEEccchh------HHHHHhhhccCCceEEEecCCC----------cccHHHhhhhcC-----
Confidence 9999999999999999999987532 1112221111111 22222110 111222221111
Q ss_pred CCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchh-HHHHHHHHcCCE
Q 005501 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGAT 424 (693)
Q Consensus 346 ~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~ 424 (693)
.........+++++||+|||||||.||||+++|+++.+.+......++++++|++++..|+.|..++ +.++.+++.|++
T Consensus 146 ~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~ 225 (504)
T PRK07514 146 DDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGAS 225 (504)
T ss_pred cccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcE
Confidence 1122234567999999999999999999999999999888877778889999999999999998887 567889999999
Q ss_pred EEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceeccc
Q 005501 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (693)
Q Consensus 425 lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (693)
+++.+ ..++..+++.+. ++|++..+|+++..++.........++++|.+++||+++++++.+++.+.+ +.++++.|
T Consensus 226 ~~~~~-~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~Y 301 (504)
T PRK07514 226 MIFLP-KFDPDAVLALMP--RATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERT-GHAILERY 301 (504)
T ss_pred EEECC-CCCHHHHHHHHH--hheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHh-CCcceeec
Confidence 99886 457888888883 799999999999999877555556678999999999999999998888775 57899999
Q ss_pred ccccccceeccCCcCCCCccCccCCCCCCceEEEEC-CCCCCCCCCCCceeeEEE-----ecccCCCccccccccccccc
Q 005501 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVY 578 (693)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild-~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~ 578 (693)
|+||++...+. .........++|.|+++++++|+| ++++++|.|+. |||++ ..||++ +++.+++.
T Consensus 302 G~tE~~~~~~~-~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~--Gel~i~~~~~~~gy~~------~~~~~~~~ 372 (504)
T PRK07514 302 GMTETNMNTSN-PYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEI--GMIEVKGPNVFKGYWR------MPEKTAEE 372 (504)
T ss_pred ccccccccccC-CccccccCcccccCCCCcEEEEEECCCCCCCCCCCc--eEEEEecCCccccccC------Cchhhhhh
Confidence 99998764332 222233456899999999999999 88999999985 99998 456766 45567777
Q ss_pred ccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEE
Q 005501 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVI 658 (693)
Q Consensus 579 f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a 658 (693)
|..++ ||+|||+|++++||+++++||+||+||++|++|+|.|||++|. .+++|.+++|+++++...+ +.+++
T Consensus 373 ~~~~~------~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~ 444 (504)
T PRK07514 373 FRADG------FFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEID-ELPGVVESAVIGVPHPDFG-EGVTA 444 (504)
T ss_pred cccCC------CeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHH-hCCCeeEEEEEeCCCCCcC-ceEEE
Confidence 76432 9999999999999999999999999999999999999999995 8999999999999887777 88999
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 659 FVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 659 ~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
+++..++...+.++++++++++|+.+++|..++.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 478 (504)
T PRK07514 445 VVVPKPGAALDEAAILAALKGRLARFKQPKRVFF 478 (504)
T ss_pred EEEECCCCCCCHHHHHHHHHhhcccCCCCcEEEE
Confidence 9999877667788999999999999999998764
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-60 Score=523.83 Aligned_cols=442 Identities=21% Similarity=0.247 Sum_probs=368.7
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
+|.++||++|+++.++ .+||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 11 ~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~i 82 (483)
T PRK03640 11 RAFLTPDRTAIEFEEK--------KVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLL 82 (483)
T ss_pred HHHhCCCceEEEeCCe--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCcEEEec
Confidence 3478999999998876 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCC
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (693)
++.++.+++..++++++++++++++..... .... ....++++......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~---------~~~~---------------------~~~~~~~~~~~~~~-- 130 (483)
T PRK03640 83 NTRLSREELLWQLDDAEVKCLITDDDFEAK---------LIPG---------------------ISVKFAELMNGPKE-- 130 (483)
T ss_pred CcCCCHHHHHHHHHhCCCCEEEEcchhhHH---------Hhhh---------------------ccccHHHHhhcccc--
Confidence 999999999999999999999998743210 0000 01123333322111
Q ss_pred CCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHcCC
Q 005501 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (693)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~ 423 (693)
.........++++++++|||||||.||+|+++|+++...+......++++++|++++..|++|..++..++.++..|+
T Consensus 131 --~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~ 208 (483)
T PRK03640 131 --EAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPIFHISGLSILMRSVIYGM 208 (483)
T ss_pred --cCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhcCCCcCcEEEEecCHHHHHHHHHHHHHHhcCC
Confidence 111122346789999999999999999999999998877776667789999999999999999999888899999999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceecc
Q 005501 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (693)
Q Consensus 424 ~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (693)
++++.+ ..++..+++.++++++|++.++|+++..|....... ....+||.+++||+++++...+++.+. ++++++.
T Consensus 209 ~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~ 284 (483)
T PRK03640 209 RVVLVE-KFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQS 284 (483)
T ss_pred EEEecC-CCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHh--CCCeeee
Confidence 999987 467899999999999999999999999998653322 234689999999999999998887764 6889999
Q ss_pred cccccccceeccCCcC-CCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccccccc
Q 005501 504 CGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (693)
Q Consensus 504 YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~ 577 (693)
||+||++..+...... .....+++|+|+++++++|+|+ ++++|.|+. |||++ +.||++ +++.+..
T Consensus 285 YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~-~~~~~~g~~--Gel~v~g~~~~~gy~~------~~~~~~~ 355 (483)
T PRK03640 285 YGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKD-GVVVPPFEE--GEIVVKGPNVTKGYLN------REDATRE 355 (483)
T ss_pred eccCcccccccccCcccccccCCCcccccCCcEEEEecC-CCcCCCCCc--eEEEEECcchhhhhcC------CHHHHHH
Confidence 9999987644333322 3345678999999999999986 489999995 99998 456766 3445555
Q ss_pred cccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEE
Q 005501 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (693)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 657 (693)
.|.. + ||+|||++++++||+++++||+||+||++|.+|++.|||+++. .+|+|.+++|++.+++..+ +.++
T Consensus 356 ~~~~-----~--~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~-~~~~v~~~~v~~~~~~~~~-~~~~ 426 (483)
T PRK03640 356 TFQD-----G--WFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLL-SHPGVAEAGVVGVPDDKWG-QVPV 426 (483)
T ss_pred HHhc-----C--CeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHH-hCCCeeEEEEEeCCCcccC-CceE
Confidence 5531 2 9999999999999999999999999999999999999999995 9999999999998887766 8899
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
+|++..+ ..+.++++++++++|+.|++|..++.
T Consensus 427 ~~~~~~~--~~~~~~l~~~~~~~l~~~~~p~~i~~ 459 (483)
T PRK03640 427 AFVVKSG--EVTEEELRHFCEEKLAKYKVPKRFYF 459 (483)
T ss_pred EEEEeCC--CCCHHHHHHHHHHhccCCCCCcEEEE
Confidence 9888654 56778999999999999999998764
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-59 Score=527.33 Aligned_cols=468 Identities=20% Similarity=0.182 Sum_probs=384.8
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++++|+++|+++.+. .+||+||.++++++|+.|.+. +++||+|+++++|+++++++++||+++|++++|++
T Consensus 21 a~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G~~~v~l~ 92 (523)
T PRK08316 21 ARRYPDKTALVFGDR--------SWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVN 92 (523)
T ss_pred HHHCCCCeEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCcEEEecc
Confidence 468899999998876 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (693)
+.++.+++..+++.+++++++++.... ..+....+......+....... ..........+.++......
T Consensus 93 ~~~~~~~i~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--- 161 (523)
T PRK08316 93 FMLTGEELAYILDHSGARAFLVDPALA------PTAEAALALLPVDTLILSLVLG--GREAPGGWLDFADWAEAGSV--- 161 (523)
T ss_pred cccCHHHHHHHHHhCCCCEEEEccchH------HHHHHHhhhcCccceeeeeccc--ccccccchhhHHHHHhcCCC---
Confidence 999999999999999999999987532 1111111111111111111100 01111223444444433221
Q ss_pred CCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhH-HHHHHHHcCC
Q 005501 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGA 423 (693)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~L~~G~ 423 (693)
.........+++++++|||||||.||+|.++|+++++.+......+++.++|+++...|+.|..++. .++.++..|+
T Consensus 162 --~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~ 239 (523)
T PRK08316 162 --AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGA 239 (523)
T ss_pred --ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCc
Confidence 1122345678999999999999999999999999988887777788999999999999999998874 4566788999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceecc
Q 005501 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (693)
Q Consensus 424 ~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (693)
++++.+ ..++..+++.++++++|++.++|+++..|.+.......+++++|.+++||++++.++.+.+.+.++++++++.
T Consensus 240 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 318 (523)
T PRK08316 240 TNVILD-APDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNC 318 (523)
T ss_pred eEEEec-CCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeee
Confidence 999986 4678899999999999999999999999988765556678899999999999999999999988878899999
Q ss_pred cccccccceeccCCcC-CCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccccccc
Q 005501 504 CGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (693)
Q Consensus 504 YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~ 577 (693)
||+||++.+.+..... .....+++|+|+++++++|+|+++++++.|+. ||+++ ..+|++ +++.++.
T Consensus 319 YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~--Gei~v~~~~~~~~y~~------~~~~~~~ 390 (523)
T PRK08316 319 YGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEV--GEIVHRSPQLMLGYWD------DPEKTAE 390 (523)
T ss_pred ecccccCccccccCccccccccCCcccCCCCcEEEEEcCCCCCCCCCCc--ceEEEECCchhhhhcC------CHHHHHH
Confidence 9999998755443322 22345789999999999999999999999985 99998 345665 4445665
Q ss_pred cccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEE
Q 005501 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (693)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 657 (693)
.|. .+||+|||+|++++||++++.||.||+||++|.+|+|.|||+.|. ++|+|.+++|++.+++..+ +.++
T Consensus 391 ~~~-------~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~ 461 (523)
T PRK08316 391 AFR-------GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALY-THPAVAEVAVIGLPDPKWI-EAVT 461 (523)
T ss_pred Hhh-------CCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHH-hCCChheEeEecccCcccC-CeEE
Confidence 553 239999999999999999999999999999999999999999995 9999999999999988777 8999
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
++++++++...+.++++++++++|+.++.|..++.
T Consensus 462 ~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 496 (523)
T PRK08316 462 AVVVPKAGATVTEDELIAHCRARLAGFKVPKRVIF 496 (523)
T ss_pred EEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEE
Confidence 99999877667778999999999999999998764
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-59 Score=531.30 Aligned_cols=470 Identities=20% Similarity=0.233 Sum_probs=359.6
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++.+|+++|+++.+. ++||+||+++++++|++|.++ +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 24 ~~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~~~vpl~ 95 (579)
T PLN03102 24 SECYPNRTSIIYGKT--------RFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPIN 95 (579)
T ss_pred HHhCCCCeEEEECCc--------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEeecc
Confidence 367999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcC-------CCceEEEcCCCCCCCCCCCCCcccHHHHhc
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-------PLKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (693)
|.++.+++.++++.++++++|++.+.. +....+.... ...++.++...... .......+|.++..
T Consensus 96 ~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 167 (579)
T PLN03102 96 TRLDATSIAAILRHAKPKILFVDRSFE------PLAREVLHLLSSEDSNLNLPVIFIHEIDFPK--RPSSEELDYECLIQ 167 (579)
T ss_pred ccCCHHHHHHHHhccCCeEEEEChhhH------HHHHHHHhhccccccccCceEEEeccccccc--CCcccccCHHHHHh
Confidence 999999999999999999999986532 1122221111 11233333211100 00112345666554
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHH
Q 005501 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417 (693)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (693)
.................++++++|+|||||||.||||+++|+++..........+.+...+++++..|++|..++...+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~ 247 (579)
T PLN03102 168 RGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPMFHCNGWTFTWG 247 (579)
T ss_pred ccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhcCCCCCCeEEecCChhhhcchhHHHH
Confidence 33221000000111235689999999999999999999999997544433434456677789999999999998877788
Q ss_pred HHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCC
Q 005501 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWY 497 (693)
Q Consensus 418 ~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~ 497 (693)
++..|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.........++++.+++||+++++.+.+++.. + +
T Consensus 248 ~~~~g~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~-g 324 (579)
T PLN03102 248 TAARGGTSVCMR-HVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR-L-G 324 (579)
T ss_pred HHHhcCcEEeec-cCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHH-c-C
Confidence 899999998886 356788999999999999999999999998764333334567888999999999988888764 3 6
Q ss_pred CceecccccccccceeccCCcCC-----C--------CccCccCCCCCCceEEEEC-CCCCCCCCC--CCceeeEEE---
Q 005501 498 NAIIESCGGTELSSAYIQGSLLQ-----P--------QAFGAFSTATMTAGLVILD-ECGVPYPDD--QPCVGEVGL--- 558 (693)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~~-----~--------~~~~~iG~p~~~~~~~ild-~~~~~~p~G--~~giGel~v--- 558 (693)
.++++.||+||+++.++...... + ...+..+.|++ .+.+.| +.++++|.+ + .|||++
T Consensus 325 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~--~GEl~v~g~ 400 (579)
T PLN03102 325 FQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKT--MGEIVIKGS 400 (579)
T ss_pred CeEEeecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEEeccccccccCCCCCC--ceEEEEECc
Confidence 78999999999986433221100 0 11222333444 455666 457777753 3 599998
Q ss_pred --ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCc
Q 005501 559 --FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADE 636 (693)
Q Consensus 559 --~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p 636 (693)
+.||++ +++.|++.|.. | ||+|||+|++|+||+++|.||.||+||++|++|+|.|||++|. +||
T Consensus 401 ~~~~GY~~------~~~~t~~~f~~-----g--w~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~p 466 (579)
T PLN03102 401 SIMKGYLK------NPKATSEAFKH-----G--WLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLY-KYP 466 (579)
T ss_pred chhhhhcC------ChhhhHhhhcc-----C--ceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHH-hCC
Confidence 467777 44567766642 3 9999999999999999999999999999999999999999996 999
Q ss_pred ccceeEEEeecCCCCCceEEEEEEEecCCCCC----------ChHHHHHHHHHHHHhhcCCCceecC
Q 005501 637 SILETAAISVSPAGGGPEVLVIFVVLKKGFTS----------QPDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 637 ~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~----------~~~~l~~~l~~~L~~~m~P~~~v~~ 693 (693)
.|.+++|++++++..+ +.++|+|++.++... +..+++++++++||.|+.|..++.+
T Consensus 467 ~V~~a~vv~~~~~~~~-~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~ 532 (579)
T PLN03102 467 KVLETAVVAMPHPTWG-ETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFL 532 (579)
T ss_pred CcceeEEEeccCcccc-ceeEEEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeEEEEc
Confidence 9999999999998877 899999998865432 3468999999999999999988753
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-59 Score=520.44 Aligned_cols=448 Identities=20% Similarity=0.226 Sum_probs=364.6
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
+++.+||++|+.+...+ +.+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 4 ~a~~~p~~~a~~~~~~~------~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~ 77 (488)
T PRK09088 4 HARLQPQRLAAVDLALG------RRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPL 77 (488)
T ss_pred hhhhCCCceEEEecCCC------cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEee
Confidence 34688999999873211 2899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCC
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (693)
++.++.+++.+++++++++++|+++...... .....++++......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~-- 123 (488)
T PRK09088 78 NWRLSASELDALLQDAEPRLLLGDDAVAAGR--------------------------------TDVEDLAAFIASADA-- 123 (488)
T ss_pred CccCCHHHHHHHHHhCCCCEEEEcchhhccc--------------------------------ccccchhhhhhhccc--
Confidence 9999999999999999999999986432100 001112222211111
Q ss_pred CCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhH-HHHHHHHcC
Q 005501 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNG 422 (693)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~L~~G 422 (693)
. .........++++++++|||||||.||+|+++|+++.+.+........+..+|++++..|+.|.+++. .++.++..|
T Consensus 124 ~-~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g 202 (488)
T PRK09088 124 L-EPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVG 202 (488)
T ss_pred c-ccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcC
Confidence 0 00111223568899999999999999999999999988777666667788999999999999999984 466788889
Q ss_pred CEEEEecCCCChhhHHHHHH--HcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCce
Q 005501 423 ATLALYQGSPLERSFGKFVQ--DAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (693)
Q Consensus 423 ~~lvi~~~~~~~~~~~~~i~--~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (693)
+++++.+ ..++..++..+. ++++|++..+|+++..+.+........+++||.+++||++++....+.+.+. ++++
T Consensus 203 ~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v 279 (488)
T PRK09088 203 GSILVSN-GFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPM 279 (488)
T ss_pred CEEEEcC-CCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh--CCce
Confidence 9998876 456777888776 4899999999999999987654444567899999999999998887766644 6889
Q ss_pred ecccccccccceeccCCc--CCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccc
Q 005501 501 IESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (693)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~ 573 (693)
++.||+||++..+..... ......+++|+|+++++++|+|+++++++.|++ |||++ ..||++ +++
T Consensus 280 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gY~~------~~~ 351 (488)
T PRK09088 280 VDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVP--GELLLRGPNLSPGYWR------RPQ 351 (488)
T ss_pred eeeecccccccccccCCCcccccccCCccccCCCCcEEEEECCCCCCCcCCCc--eEEEEECCccchhhcC------Chh
Confidence 999999999865432211 112345789999999999999999999999985 99998 356666 344
Q ss_pred cccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCc
Q 005501 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (693)
Q Consensus 574 ~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~ 653 (693)
.++..|.. ++||+|||+|++++||+++|.||.||+||++|++|+|.|||++|. .||+|.+++|++++++..|
T Consensus 352 ~~~~~~~~------~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~-~~~~v~~~~v~~~~~~~~g- 423 (488)
T PRK09088 352 ATARAFTG------DGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLA-DHPGIRECAVVGMADAQWG- 423 (488)
T ss_pred hhhhhhcC------CCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHH-hCCCcceEEEEeCCCccCC-
Confidence 56655542 349999999999999999999999999999999999999999995 9999999999999887767
Q ss_pred eEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 654 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
+..+++|+++++...+..+++++|+++|+.|+.|..+..
T Consensus 424 ~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 462 (488)
T PRK09088 424 EVGYLAIVPADGAPLDLERIRSHLSTRLAKYKVPKHLRL 462 (488)
T ss_pred ceeEEEEEECCCCCCCHHHHHHHHHhhCcCCCCCCEEEE
Confidence 789999998876556778999999999999999988764
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-60 Score=548.71 Aligned_cols=465 Identities=19% Similarity=0.214 Sum_probs=357.2
Q ss_pred cCCCCCC-cEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 185 HRRKEDN-TVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd-~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
+++++|+ ++|+.+.+. +++||+||.++++++|++|++.+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 213 ~~~~~p~~~~a~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~~~~gd~Val~~~n~~e~~~~~lA~~~~G~v~vpl 285 (718)
T PRK08043 213 AQYRYGAGKPCIEDVNF-------TPDSYRKLLKKTLFVGRILEKYSVEGERIGLMLPNATISAAVIFGASLRRRIPAMM 285 (718)
T ss_pred HHHHhCCCCcceEcCCC-------CcccHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCcHHHHHHHHHHHHcCCccccc
Confidence 3468897 688875331 28999999999999999998768999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC-ceEEEcCCCCCCCCCCCCCcccHHHH--h-ccc
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDF--L-SSV 339 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~ 339 (693)
++.++.+++.+++++++++++|++++.....+... .....+. ..+.+..... ...+.+. . ...
T Consensus 286 ~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~ 352 (718)
T PRK08043 286 NYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWH----LPEQLTQVRWVYLEDLKD---------DVTTADKLWIFAHL 352 (718)
T ss_pred ccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCC----hhhhhccccEEEhhhhhh---------hcchhHHHHHHHHH
Confidence 99999999999999999999999876432111000 0011111 1222111000 0011110 0 000
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchh-HHHHHH
Q 005501 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSS 418 (693)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~ 418 (693)
.. + ........++|+++|+|||||||.||||+++|+++.+.+.+....++++++|++++++|++|.+++ ..++.+
T Consensus 353 ~~---~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~ 428 (718)
T PRK08043 353 LM---P-RLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTP 428 (718)
T ss_pred hC---C-ccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHH
Confidence 00 0 001123457899999999999999999999999999888877777889999999999999999987 568899
Q ss_pred HHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCC
Q 005501 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYN 498 (693)
Q Consensus 419 L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~ 498 (693)
|..|+++++.+...++..+++.++++++|++..+|+++..+.+.. ...++++||.+++||+++++++.+.+.+.+ ++
T Consensus 429 l~~G~~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~-g~ 505 (718)
T PRK08043 429 LLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKF-GL 505 (718)
T ss_pred HHcCCEEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHc-CC
Confidence 999999999875456677889999999999999999998876642 334678999999999999999998888766 68
Q ss_pred ceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccc
Q 005501 499 AIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (693)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~ 573 (693)
++++.||+||++...+...+ .....+++|+|+||++++|+|+++. |+ .|||++ ..||++.. +++
T Consensus 506 ~l~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~~~i~d~~~~----~~--~Gel~v~g~~v~~GY~~~e----~~~ 574 (718)
T PRK08043 506 RILEGYGVTECAPVVSINVP-MAAKPGTVGRILPGMDARLLSVPGI----EQ--GGRLQLKGPNIMNGYLRVE----KPG 574 (718)
T ss_pred CeecccCcccccceEEecCC-cccCCCCCCCcCCCCeeEEecCCCC----CC--ceEEEEecCCccccccCCC----Ccc
Confidence 99999999999875544332 2345689999999999999997653 34 389987 45676521 111
Q ss_pred ccccccc-ccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCC
Q 005501 574 HEEVYFR-GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652 (693)
Q Consensus 574 ~t~~~f~-~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g 652 (693)
.+...+. ........+||+|||+|++|+||+++|.||+||+||++|++|+|.|||++|. +|+.+.+++|++.+++..+
T Consensus 575 ~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~-~~~~~~~~avv~~~~~~~g 653 (718)
T PRK08043 575 VLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLAL-GVSPDKQHATAIKSDASKG 653 (718)
T ss_pred cccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHH-hCCccceEEEEEccCCCCC
Confidence 1111111 0000112359999999999999999999999999999999999999999995 8988889999999888777
Q ss_pred ceEEEEEEEecCCCCCChHHHHHHHHHH-HHhhcCCCceec
Q 005501 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKA-IQSKLNPLFKVW 692 (693)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~l~~~l~~~-L~~~m~P~~~v~ 692 (693)
+.++++++ +...+.++++++++++ |+.|++|..+++
T Consensus 654 -e~~v~~~~---~~~~~~~~l~~~~~~~~l~~~~vP~~i~~ 690 (718)
T PRK08043 654 -EALVLFTT---DSELTREKLQQYAREHGVPELAVPRDIRY 690 (718)
T ss_pred -ceEEEEEc---CcccCHHHHHHHHHhcCCCcccCCceEEE
Confidence 88888875 2346778999999998 999999998765
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-59 Score=528.01 Aligned_cols=472 Identities=20% Similarity=0.221 Sum_probs=370.9
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vp 262 (693)
+++++|+++|+++.+. .+||+||.++++++|++|.+ . +++||+|+++++|++++++++|||+++|++++|
T Consensus 33 ~~~~~p~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~G~v~v~ 104 (562)
T PRK12492 33 SCKKFADRPAFSNLGV--------TLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVVN 104 (562)
T ss_pred HHHhCCCCeeEecCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEec
Confidence 3468999999987665 99999999999999999987 5 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEE---------------EcCCCCC----CCC
Q 005501 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV---------------LPAIGND----VGI 323 (693)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~----~~~ 323 (693)
++|.++.+++.+++++++++++++++.+... ...+.......... ....... ...
T Consensus 105 ~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (562)
T PRK12492 105 TNPLYTAREMRHQFKDSGARALVYLNMFGKL------VQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPA 178 (562)
T ss_pred cCccCCHHHHHHHHhccCceEEEeccccchH------HHHhhhccCceEEEeechhhccccccchhcccccccccccccc
Confidence 9999999999999999999999997643211 11111100000000 0000000 000
Q ss_pred CCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcC---------C
Q 005501 324 PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID---------L 394 (693)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~---------~ 394 (693)
........|+++...... ....+.....+++++|+|||||||.||||+++|+++...+......+. +
T Consensus 179 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 254 (562)
T PRK12492 179 YHLPQAVPFKQALRQGRG----LSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLM 254 (562)
T ss_pred cCCcccccHHHHHhccCC----CCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccc
Confidence 000122445555433221 111123346689999999999999999999999998776655443332 2
Q ss_pred CCC-CEEEEeCCccccchh-HHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCcc
Q 005501 395 KVG-DVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472 (693)
Q Consensus 395 ~~~-d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~ 472 (693)
..+ ++++...|+.|.++. +.++..+..|++.++.....++..+++.|+++++|++..+|+++..|++.......++++
T Consensus 255 ~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~ 334 (562)
T PRK12492 255 KEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSA 334 (562)
T ss_pred cCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccc
Confidence 333 567888999999887 456677888988887765557788999999999999999999999998775545566889
Q ss_pred ccEEEeecCCCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCc
Q 005501 473 IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 552 (693)
Q Consensus 473 lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~g 552 (693)
+|.+++||+++++.+.+++.+.+ ++++++.||+||++..++..........+++|+|+++++++|+|+++++++.|+.
T Consensus 335 lr~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~~~~~~~g~~- 412 (562)
T PRK12492 335 LKLTNSGGTALVKATAERWEQLT-GCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPLGER- 412 (562)
T ss_pred eeEEEeccccCCHHHHHHHHHHh-CCceeeccCccccCceeeecCCcccccCCccceecCCCEEEEECCCCCCCCCCCc-
Confidence 99999999999999988887654 6899999999999876554433333345789999999999999999999999985
Q ss_pred eeeEEE-----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHH
Q 005501 553 VGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627 (693)
Q Consensus 553 iGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eI 627 (693)
|||++ ..||++ +++.|.+.|.. ++||+|||+|++++||+++|.||.||+||++|++|+|.||
T Consensus 413 -Gel~v~g~~~~~gY~~------~~~~t~~~~~~------~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eI 479 (562)
T PRK12492 413 -GELCIKGPQVMKGYWQ------QPEATAEALDA------EGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEI 479 (562)
T ss_pred -eEEEEeCCcccccccc------CchhhhhcccC------CCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHH
Confidence 99998 356666 45566666642 2399999999999999999999999999999999999999
Q ss_pred HHHHhccCcccceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 628 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 628 E~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
|++|. +||+|.+++|++.++...+ +.+++|+++.++ ..+.++++++++++|+.|++|..+..
T Consensus 480 E~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~-~~~~~~i~~~~~~~l~~~~~P~~i~~ 541 (562)
T PRK12492 480 EDVVM-AHPKVANCAAIGVPDERSG-EAVKLFVVARDP-GLSVEELKAYCKENFTGYKVPKHIVL 541 (562)
T ss_pred HHHHH-hCCCeeEEEEEeccCCCCC-ceEEEEEEeCCC-CCCHHHHHHHHHHhcccccCCcEEEE
Confidence 99996 9999999999999887777 889999987654 35678999999999999999988764
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-59 Score=528.60 Aligned_cols=461 Identities=15% Similarity=0.198 Sum_probs=353.2
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
+|+++|+++|+++.+.. +.+||+||+++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 23 ~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~v~v~l 96 (540)
T PRK05857 23 QARQQPEAIALRRCDGT------SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMA 96 (540)
T ss_pred HHhhCCCcEEEeecCCC------ceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEec
Confidence 45789999999865431 2799999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCC
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (693)
++.++.+++.++++.++++++|+++........+. ..... ...+.++..... . . +.+....
T Consensus 97 ~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~-------~-~-~~~~~~~----- 157 (540)
T PRK05857 97 DGNLPIAAIERFCQITDPAAALVAPGSKMASSAVP---EALHS--IPVIAVDIAAVT-------R-E-SEHSLDA----- 157 (540)
T ss_pred CccCCHHHHHHHHHhcCCceEEEeccchhcccccc---ccccc--cceeEeeccccc-------c-c-ccccccc-----
Confidence 99999999999999999999999976431111110 00000 011122110000 0 0 0000000
Q ss_pred CCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhc----hhcCCCCCCEEEEeCCccccchhHHHHHHH
Q 005501 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW----AHIDLKVGDVYCWPTNLGWVMGPVILFSSF 419 (693)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~----~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L 419 (693)
..........+++++|++|||||||.||||+++|+++.+...... ..++...+++++...|+.|+.+++..+.++
T Consensus 158 -~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~~~~~~l 236 (540)
T PRK05857 158 -ASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLPATHIGGLWWILTCL 236 (540)
T ss_pred -cccccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCCccccchHHHHHHHh
Confidence 000111234678999999999999999999999999876544321 224566788999999999999998888999
Q ss_pred HcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCc
Q 005501 420 LNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (693)
Q Consensus 420 ~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (693)
+.|+++++.+ .++..+++.|+++++|++.++|++++.|++.......+++++|.+++||++++....+++. .+ +.+
T Consensus 237 ~~G~~~v~~~--~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~-~~-g~~ 312 (540)
T PRK05857 237 MHGGLCVTGG--ENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVRFIE-AT-GVR 312 (540)
T ss_pred hcceeEEecC--CChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHHHHH-Hh-CCe
Confidence 9999987643 4678899999999999999999999999876554556789999999999999887765543 43 689
Q ss_pred eecccccccccceeccCCcCC----CCccCccCCCCCCceEEEECCCCCC-C-----CCCCCceeeEEE-----ecccCC
Q 005501 500 IIESCGGTELSSAYIQGSLLQ----PQAFGAFSTATMTAGLVILDECGVP-Y-----PDDQPCVGEVGL-----FPLYLG 564 (693)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~~~ild~~~~~-~-----p~G~~giGel~v-----~~gy~~ 564 (693)
+++.||+||++...+...... ....+++|+|++|++++|+|++++. + +.|+ +|||++ ..||++
T Consensus 313 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~--~Gel~v~g~~~~~GY~~ 390 (540)
T PRK05857 313 TAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSAS--FGTLWIKSPANMLGYWN 390 (540)
T ss_pred eecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCC--cceEEEeCcchhhhhhC
Confidence 999999999985433222111 1235789999999999999987763 3 3455 599998 346666
Q ss_pred CcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEE
Q 005501 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644 (693)
Q Consensus 565 ~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv 644 (693)
+++.|++.|. +| ||+|||+|++++||+++|.||.||+||++|++|+|.|||++|. .||+|.+|+|+
T Consensus 391 ------~~~~t~~~~~-----~g--~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~-~~~~V~~~~v~ 456 (540)
T PRK05857 391 ------NPERTAEVLI-----DG--WVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAE-GVSGVREAACY 456 (540)
T ss_pred ------CccchhhhcC-----CC--ceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHH-hCCCeeEEEEE
Confidence 4556776664 23 9999999999999999999999999999999999999999995 99999999999
Q ss_pred eecCCCCCceEEEEEEEecCCCCC-ChH----HHHHHHHHHHHhhcCCCceec
Q 005501 645 SVSPAGGGPEVLVIFVVLKKGFTS-QPD----KLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 645 ~~~~~~~g~~~l~a~vv~~~~~~~-~~~----~l~~~l~~~L~~~m~P~~~v~ 692 (693)
++++...+ +.++++++..++... ..+ .++++++++|+.|++|..+..
T Consensus 457 ~~~~~~~~-~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~ 508 (540)
T PRK05857 457 EIPDEEFG-ALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPSTIVI 508 (540)
T ss_pred ecCccccc-cceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccccCCeEEEE
Confidence 99987766 788888887653211 123 344555677899999988764
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-59 Score=523.24 Aligned_cols=460 Identities=18% Similarity=0.213 Sum_probs=372.9
Q ss_pred CCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCC
Q 005501 190 DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268 (693)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~~~ 268 (693)
|+++|+++.+. ++||+||.++++++|++|.+. +++|++|+++++|++++++++|||+++|++++++++..+
T Consensus 37 p~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~G~v~v~~~~~~~ 108 (536)
T PRK10946 37 SDAIAVICGER--------QFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPVNALFSHQ 108 (536)
T ss_pred CCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHcCeEEecCCcccc
Confidence 99999998776 999999999999999999999 999999999999999999999999999998888777788
Q ss_pred HHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC-ceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCCCC
Q 005501 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (693)
Q Consensus 269 ~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (693)
..++..++++++++++++++.... ...-.....+.+..+. ..+.+... .....+.++...... .
T Consensus 109 ~~~~~~~~~~~~~~~li~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-----~ 173 (536)
T PRK10946 109 RSELNAYASQIEPALLIADRQHAL-FSDDDFLNTLVAEHSSLRVVLLLND---------DGEHSLDDAINHPAE-----D 173 (536)
T ss_pred HHHHHHHHhhcCCCEEEEeccccc-cchHHHHHHHHhhCCCceEEEEecC---------CCCccHHHHhhCccc-----c
Confidence 889999999999999999864210 0000111112221221 22222111 112234444433221 1
Q ss_pred CCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhH--HHHHHHHcCCEE
Q 005501 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV--ILFSSFLNGATL 425 (693)
Q Consensus 348 ~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~~~~~L~~G~~l 425 (693)
.......++++++++|||||||.||||+++|+++...+......++++++|++++..|++|.+++. .++.+|..|+++
T Consensus 174 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~g~~~ 253 (536)
T PRK10946 174 FTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTV 253 (536)
T ss_pred cccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhcCcEE
Confidence 112344678999999999999999999999999999888887888999999999999999987763 578899999999
Q ss_pred EEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhc--CcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceecc
Q 005501 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT--NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (693)
Q Consensus 426 vi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~--~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (693)
++.+ ..++..+++.++++++|++.++|+++..|+.. .......++++|.+++||+++++.+.+.+.+.+ ++++++.
T Consensus 254 ~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~-g~~~~~~ 331 (536)
T PRK10946 254 VLAP-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAEL-GCQLQQV 331 (536)
T ss_pred EECC-CCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhc-CCeEEEe
Confidence 8875 45778899999999999999999999999865 222334568999999999999999988887765 6899999
Q ss_pred cccccccceeccCCcCCCCccCccCCCC-CCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccccccc
Q 005501 504 CGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (693)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~ 577 (693)
||+||+++.++...........++|+|+ +++.++|+|+++++++.|+. |||++ +.||++ +++.|.+
T Consensus 332 YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~--Gel~v~g~~~~~GY~~------~~~~t~~ 403 (536)
T PRK10946 332 FGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEV--GRLMTRGPYTFRGYYK------SPQHNAS 403 (536)
T ss_pred ecccccceeeecCCCccccccccCCcccCCCceEEEECCCCCCCCCCCc--cEEEEecCccchhhcC------Ccccchh
Confidence 9999976544332222223457899999 79999999999999999995 99998 467776 4557777
Q ss_pred cccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEE
Q 005501 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (693)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 657 (693)
.|..+ +||+|||+|++++||++++.||.||+||++|++|+|.|||++|. +||+|.+++|++.++...| +.++
T Consensus 404 ~~~~d------~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~ 475 (536)
T PRK10946 404 AFDAN------GFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLL-RHPAVIHAALVSMEDELMG-EKSC 475 (536)
T ss_pred hcccC------CceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHH-hCCCcceEEEEcCCCcccC-ceEE
Confidence 77643 39999999999999999999999999999999999999999995 9999999999999988777 8999
Q ss_pred EEEEecCCCCCChHHHHHHHHHH-HHhhcCCCceec
Q 005501 658 IFVVLKKGFTSQPDKLKMIFSKA-IQSKLNPLFKVW 692 (693)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~-L~~~m~P~~~v~ 692 (693)
++|+++++ .+.+++++++++. |++|+.|..++.
T Consensus 476 a~vv~~~~--~~~~~l~~~~~~~~l~~~~~P~~~~~ 509 (536)
T PRK10946 476 AFLVVKEP--LKAVQLRRFLREQGIAEFKLPDRVEC 509 (536)
T ss_pred EEEEeCCC--CCHHHHHHHHHhCCccccccCcEEEE
Confidence 99998764 6778999999986 999999988764
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-59 Score=520.84 Aligned_cols=454 Identities=19% Similarity=0.200 Sum_probs=372.4
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
|+.+|+++|+.+.+. .+||+||.++++++|+.|.+. +++|++|+++++|+.++++++|||+++|++++|++
T Consensus 10 a~~~p~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~~~ 81 (502)
T TIGR01734 10 AETYPQTIAYRYQGQ--------ELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVD 81 (502)
T ss_pred HHHCCCceEEEcCCc--------EEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCEEeCCC
Confidence 467899999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (693)
+.++.+++..+++.+++++++++........ ....+.+. ...........
T Consensus 82 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~------------~~~~~~~~---------------~~~~~~~~~~~--- 131 (502)
T TIGR01734 82 TSIPSERIEMIIEAAGPELVIHTAELSIDAV------------GTQIITLS---------------ALEQAETSGGP--- 131 (502)
T ss_pred CcChHHHHHHHHHhcCCCEEEeccccccccc------------CCceEEch---------------HhhhhhhhcCC---
Confidence 9999999999999999999999875321100 00111110 00111111100
Q ss_pred CCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHcCCE
Q 005501 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (693)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~ 424 (693)
........++++++|+|||||||.||||+++|+++...+.+....+++..+++++...|++|+.+++.++.++..|++
T Consensus 132 --~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~ 209 (502)
T TIGR01734 132 --VSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAPFSFDLSVMDLYPCLASGGT 209 (502)
T ss_pred --ccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhCCCCCCceEEeecCceechhHHHHHHHHHCCCE
Confidence 001122356899999999999999999999999999888888888889999999999999999999999999999999
Q ss_pred EEEecCC--CChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceec
Q 005501 425 LALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (693)
Q Consensus 425 lvi~~~~--~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (693)
+++.+.. .++..+++.++++++|.+.++|+++..++.........+++++.++++|++++.+..+++.+.++++.+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 289 (502)
T TIGR01734 210 LHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYN 289 (502)
T ss_pred EEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEe
Confidence 9998753 36788999999999999999999998877654344556789999999999999999999998888899999
Q ss_pred ccccccccceeccCCc----CCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccc
Q 005501 503 SCGGTELSSAYIQGSL----LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNAD 573 (693)
Q Consensus 503 ~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~ 573 (693)
.||+||++++++.... .......++|+|++|++++|+|++++++|.|+ +|||++ .+||++ +++
T Consensus 290 ~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~--~Gel~v~g~~~~~gy~~------~~~ 361 (502)
T TIGR01734 290 TYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGE--KGEIVIVGPSVSKGYLN------NPE 361 (502)
T ss_pred CccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCCCCCCCCCC--eeEEEEccccccccccC------Ccc
Confidence 9999999865443221 12223457999999999999999999999998 499998 467776 444
Q ss_pred cccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeec-CCCCC
Q 005501 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS-PAGGG 652 (693)
Q Consensus 574 ~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~-~~~~g 652 (693)
.+...|... .|.+||+|||+|+++++ ++++.||.||+||++|++|+|.|||++|. ++|+|++|+|+++. +...+
T Consensus 362 ~~~~~~~~~---~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~-~~~~v~~~~vv~~~~~~~~~ 436 (502)
T TIGR01734 362 KTAEAFFSH---EGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLR-QSSYIESAVVVPKYNKDHKV 436 (502)
T ss_pred cchHhheeC---CCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHH-cCCCccEEEEEEEEcCCCCc
Confidence 555555432 36679999999999976 99999999999999999999999999995 99999999999976 33344
Q ss_pred ceEEEEEEEecCCCCCC---h-HHHHHHHHHHHHhhcCCCceecC
Q 005501 653 PEVLVIFVVLKKGFTSQ---P-DKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 653 ~~~l~a~vv~~~~~~~~---~-~~l~~~l~~~L~~~m~P~~~v~~ 693 (693)
+.++++|++.+....+ . .+++++++++||.++.|.+++++
T Consensus 437 -~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~~~~v 480 (502)
T TIGR01734 437 -EYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYR 480 (502)
T ss_pred -eEEEEEEEecccccccchhhHHHHHHHHhhhChhhcCCcEEEEc
Confidence 8899999987643221 1 67899999999999999988753
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-59 Score=525.85 Aligned_cols=474 Identities=21% Similarity=0.195 Sum_probs=383.8
Q ss_pred ccchhhhhccCcccCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHH
Q 005501 172 VLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIY 250 (693)
Q Consensus 172 ~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~ 250 (693)
+.|..+.+.. .++.+|+++|+++.+. .+||.||.++++++|++|.+. +++|++|+|+++|++++++++
T Consensus 16 ~~n~~~~~~~---~a~~~~~~~a~~~~~~--------~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~ 84 (542)
T PRK07786 16 RQNWVNQLAR---HALMQPDAPALRFLGN--------TTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESV 84 (542)
T ss_pred ccCHHHHHHH---HHHHCCCCeEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 3455544332 2367899999998877 999999999999999999999 999999999999999999999
Q ss_pred HHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCCCCCCCCC
Q 005501 251 LAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQ 328 (693)
Q Consensus 251 LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 328 (693)
+||+++|++++|+++.++.+++..+++++++++++++.... ..........+. ..+++... ...+
T Consensus 85 ~a~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 151 (542)
T PRK07786 85 LAANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALA------PVATAVRDIVPLLSTVVVAGGS-------SDDS 151 (542)
T ss_pred HHHHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchH------HHHHHhhhccCccceEEEecCC-------Cccc
Confidence 99999999999999999999999999999999999987432 111111111111 12222110 0112
Q ss_pred cccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCC-CCCCEEEEeCCcc
Q 005501 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDL-KVGDVYCWPTNLG 407 (693)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~d~~l~~~~~~ 407 (693)
..+++++...... .........+++++++|||||||.||||+++|+++.+.+......+++ ..++++++..|+.
T Consensus 152 ~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~ 226 (542)
T PRK07786 152 VLGYEDLLAEAGP-----AHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLF 226 (542)
T ss_pred ccCHHHHhhccCC-----CCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhcCCCCCCceEEEecchH
Confidence 3456666543322 111223456789999999999999999999999998887777666776 6778999999999
Q ss_pred ccchhHHHHHHHHcCCEEEEecC-CCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcc
Q 005501 408 WVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVD 486 (693)
Q Consensus 408 ~~~~~~~~~~~L~~G~~lvi~~~-~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~ 486 (693)
|.+++..++.++..|+++++.+. ..++..+++.|+++++|.++++|+++..|.......... .++|.+++||++++++
T Consensus 227 ~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~lr~i~~gg~~~~~~ 305 (542)
T PRK07786 227 HIAGIGSMLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LALRVLSWGAAPASDT 305 (542)
T ss_pred HHHHHHHHHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cceEEEEECCCCCCHH
Confidence 99999889999999999999753 457889999999999999999999999998765433332 3699999999999999
Q ss_pred hHHHHHhhCCCCceecccccccccceeccCCcC-CCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ec
Q 005501 487 DDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FP 560 (693)
Q Consensus 487 ~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~ 560 (693)
+.+++.+.+++.++++.||+||++...+..... ......++|+|++++.++|+|+++++++.|+ +|||++ ..
T Consensus 306 ~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~--~Gel~v~g~~~~~ 383 (542)
T PRK07786 306 LLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGE--VGEIVYRAPTLMS 383 (542)
T ss_pred HHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEECCCCCCCcCCC--ceEEEEEChhhhh
Confidence 999999988889999999999998644332221 1234578999999999999999999999998 499998 45
Q ss_pred ccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccce
Q 005501 561 LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 640 (693)
Q Consensus 561 gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~ 640 (693)
||++ +++.+...|. . .||+|||++++++||+++++||.||+||++|.+|++.|||++|. +||+|.+
T Consensus 384 gy~~------~~~~~~~~f~-----~--~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~-~~~~v~~ 449 (542)
T PRK07786 384 GYWN------NPEATAEAFA-----G--GWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLA-SHPDIVE 449 (542)
T ss_pred hhcC------CHHHHHHHhh-----C--CcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHH-hCCCccE
Confidence 6766 4445665663 1 39999999999999999999999999999999999999999995 9999999
Q ss_pred eEEEeecCCCCCceEEEEEEEecCCC-CCChHHHHHHHHHHHHhhcCCCceec
Q 005501 641 TAAISVSPAGGGPEVLVIFVVLKKGF-TSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 641 a~Vv~~~~~~~g~~~l~a~vv~~~~~-~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
++|++.+++..+ +.+++++++.++. ....++++++++++|+.|+.|..++.
T Consensus 450 ~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~ 501 (542)
T PRK07786 450 VAVIGRADEKWG-EVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPKALEI 501 (542)
T ss_pred EEEEeccCcccC-ceEEEEEEECCCCCCCCHHHHHHHHHhhccCCCCCCEEEE
Confidence 999999887777 8899999987643 35678999999999999999998765
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-59 Score=519.46 Aligned_cols=461 Identities=18% Similarity=0.154 Sum_probs=359.6
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
+|+++|+++|+++.+.+ +++||+||.++++++|++|.++ +++||+|+++++|++++++++|||+++|++++|+
T Consensus 6 ~a~~~p~~~a~~~~~~~------~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l 79 (501)
T PRK13390 6 HAQIAPDRPAVIVAETG------EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAI 79 (501)
T ss_pred hhhhCCCCcEEEecCCC------eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEecc
Confidence 45789999999875321 3899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCC
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (693)
++.++++++.+++++++++++++++... .......... ...+.+.. . ......+++.......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~-~~~~~~~~--~------~~~~~~~~~~~~~~~~-- 142 (501)
T PRK13390 80 NHHLTAPEADYIVGDSGARVLVASAALD------GLAAKVGADL-PLRLSFGG--E------IDGFGSFEAALAGAGP-- 142 (501)
T ss_pred ccCCCHHHHHHHHHhcCCcEEEEcchhh------hHHHHhhhcc-ceEEEecC--c------ccccccHHHHhcccCC--
Confidence 9999999999999999999999976431 0011110000 00111110 0 0011223332221100
Q ss_pred CCCCCCCccCCCCCeEEEEeccCCCCCcceEEe--cchhHHHH----HHHhchhcCCCCCCEEEEeCCccccchhHHHHH
Q 005501 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPW--TQLSSIRC----TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 417 (693)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~--sh~~l~~~----~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (693)
.....+++++|+|||||||.||||++ +|+++... .......++++.+|+++..+|++|+.++...+.
T Consensus 143 -------~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~~~ 215 (501)
T PRK13390 143 -------RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSM 215 (501)
T ss_pred -------CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHHHH
Confidence 01122357999999999999999995 55555432 112234567889999999999999988755556
Q ss_pred HHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCc--CCCCCCccccEEEeecCCCCcchHHHHHhhC
Q 005501 418 SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKA 495 (693)
Q Consensus 418 ~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~ 495 (693)
.+..|+++++.+ ..++..+++.|+++++|++.++|+++..|..... ....+++++|.+++||+++++++.+.+.+.+
T Consensus 216 ~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~ 294 (501)
T PRK13390 216 VHALGGTVVLAK-RFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL 294 (501)
T ss_pred HHhcCceEEEcC-CcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhc
Confidence 678899998876 4678899999999999999999999999886532 1334578999999999999999988887765
Q ss_pred CCCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCccccc
Q 005501 496 WYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLL 570 (693)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~ 570 (693)
+..+++.||+||++.++...........+++|+|+++ .++|+|+++++++.|++ |||++ ..||++
T Consensus 295 -~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~------ 364 (501)
T PRK13390 295 -GPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICDDDGNELPAGRI--GTVYFERDRLPFRYLN------ 364 (501)
T ss_pred -CCceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEECCCCCCCCCCCc--eEEEEecCCccccccC------
Confidence 5789999999999865433322222345789999999 79999999999999995 99998 345665
Q ss_pred ccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCC
Q 005501 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 650 (693)
Q Consensus 571 ~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~ 650 (693)
+++.|++.|... +..||+|||+|++++||+++|.||.|++||++|+||+|.|||++|. .||+|.+++|++++++.
T Consensus 365 ~~~~t~~~~~~~----~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~-~~~~v~~~~v~~~~~~~ 439 (501)
T PRK13390 365 DPEKTAAAQHPA----HPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALT-MHPAVHDVAVIGVPDPE 439 (501)
T ss_pred ChhhhHHhhccC----CCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHH-hCCCeeEEEEEeccCcc
Confidence 455666665421 2249999999999999999999999999999999999999999995 99999999999999887
Q ss_pred CCceEEEEEEEecCCCCCC---hHHHHHHHHHHHHhhcCCCceec
Q 005501 651 GGPEVLVIFVVLKKGFTSQ---PDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 651 ~g~~~l~a~vv~~~~~~~~---~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
.+ +.+++++++.++...+ .++++++++++|+.||.|..++.
T Consensus 440 ~~-e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~ 483 (501)
T PRK13390 440 MG-EQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPRSVEF 483 (501)
T ss_pred cC-ceeEEEEEecCCCCcchhhHHHHHHHHHHhcccCCCCcEEEE
Confidence 77 8999999987654333 35899999999999999998875
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=525.63 Aligned_cols=479 Identities=16% Similarity=0.184 Sum_probs=376.1
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
+..+|+++|+++.+. ..+.+||+||.++++++|++|.+ . +++||+|+++++|+++++++++||+++|++++|+
T Consensus 20 a~~~~~~~a~~~~~~-----~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~~G~~~v~l 94 (576)
T PRK05620 20 STVHGDTTVTTWGGA-----EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPL 94 (576)
T ss_pred HHhCCCceEEEEcCC-----ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcCCEEeec
Confidence 368999999987543 23599999999999999999987 6 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC-c-eEEEcCCCCC---CCCCCCCCcccHHHHhcc
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-K-AIVLPAIGND---VGIPLREQDLSWKDFLSS 338 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 338 (693)
+|.++.+++.++++.++++++|+++... ..+..+....+. + ++.+...... ..........+|.++...
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 168 (576)
T PRK05620 95 NKQLMNDQIVHIINHAEDEVIVADPRLA------EQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDG 168 (576)
T ss_pred ccccCHHHHHHHHhccCCcEEEEChhhH------HHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhhc
Confidence 9999999999999999999999987532 112222222221 1 2222211100 000011123457777653
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHh--chhcCCCCCCEEEEeCCccccchhHHHH
Q 005501 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG--WAHIDLKVGDVYCWPTNLGWVMGPVILF 416 (693)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 416 (693)
... ........++++++++|||||||.||||+++|+++....... ...+++..++++++.+|++|+++...++
T Consensus 169 ~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~ 243 (576)
T PRK05620 169 RST-----VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVPIYHVLSWGVPL 243 (576)
T ss_pred CCC-----cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCChHHhhhhHHHH
Confidence 221 112233567899999999999999999999999986544322 2357788999999999999999998888
Q ss_pred HHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCC
Q 005501 417 SSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW 496 (693)
Q Consensus 417 ~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~ 496 (693)
.++..|+++++.+...++..+++.|+++++|++..+|+++..++........+..+||.+++||+++++.+.+++.+.+
T Consensus 244 ~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~- 322 (576)
T PRK05620 244 AAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERY- 322 (576)
T ss_pred HHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHh-
Confidence 9999999999987667889999999999999999999999988765332333346899999999999999988887765
Q ss_pred CCceecccccccccceeccCCcCC-------CCccCccCCCCCCceEEEECCCCCCCC--CCCCceeeEEE-----eccc
Q 005501 497 YNAIIESCGGTELSSAYIQGSLLQ-------PQAFGAFSTATMTAGLVILDECGVPYP--DDQPCVGEVGL-----FPLY 562 (693)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~~-------~~~~~~iG~p~~~~~~~ild~~~~~~p--~G~~giGel~v-----~~gy 562 (693)
++++++.||+||++...+...+.. .....++|++.++++++|+|+ +++++ .|. +|||++ +.||
T Consensus 323 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-g~~~~~~~~~--~Gel~v~g~~~~~gY 399 (576)
T PRK05620 323 GVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND-GQVMESTDRN--EGEIQVRGNWVTASY 399 (576)
T ss_pred CCceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC-CccccCCCCC--ceEEEEEcCcccccc
Confidence 578999999999986544332211 012347899999999999998 77775 355 599998 4677
Q ss_pred CCCcccccccccc----cccccccccC------CCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHh
Q 005501 563 LGASDRLLNADHE----EVYFRGMPMY------KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (693)
Q Consensus 563 ~~~~~~~~~~~~t----~~~f~~~p~~------~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~ 632 (693)
++. ++.+ ...|..+++. ..++||+|||+|++++||+++|.||.||+||++|++|++.|||++|.
T Consensus 400 ~~~------~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~ 473 (576)
T PRK05620 400 YHS------PTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIM 473 (576)
T ss_pred cCC------ccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHh
Confidence 763 3344 5556544421 13459999999999999999999999999999999999999999996
Q ss_pred ccCcccceeEEEeecCCCCCceEEEEEEEecCCCC---CChHHHHHHHHHHHHhhcCCCceec
Q 005501 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFT---SQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 633 ~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~---~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
+||+|.+|+|++.+++..| +.++++++..++.. .+.++|+++|+++|+.|++|..++.
T Consensus 474 -~~p~v~~~~vv~~~~~~~g-~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~ 534 (576)
T PRK05620 474 -AAPEVVECAVIGYPDDKWG-ERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTF 534 (576)
T ss_pred -cCCCceEEEEEeccCCCcC-ceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCeEEEE
Confidence 9999999999999998877 88999999877643 3468999999999999999998875
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-59 Score=513.28 Aligned_cols=433 Identities=20% Similarity=0.188 Sum_probs=359.3
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p 265 (693)
+++.++++|+++.++ ++||+||.++++++|..|+ ++|+|+++++|++++++++|||+++|++++|++|
T Consensus 10 ~~~~~~~~a~~~~~~--------~~Ty~el~~~~~~~a~~L~----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~ 77 (471)
T PRK07787 10 AAAADIADAVRIGGR--------VLSRSDLAGAATAVAERVA----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPP 77 (471)
T ss_pred hcccCCceEEEeCCc--------EEEHHHHHHHHHHHHHHhc----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCC
Confidence 357799999999877 9999999999999999996 5799999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCC
Q 005501 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (693)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (693)
..+.+++..+++++++++++++.... . ...+...+.. ....|.
T Consensus 78 ~~~~~~l~~~l~~~~~~~il~~~~~~--~----------~~~~~~~~~~-------------~~~~~~------------ 120 (471)
T PRK07787 78 DSGVAERRHILADSGAQAWLGPAPDD--P----------AGLPHVPVRL-------------HARSWH------------ 120 (471)
T ss_pred CCChHHHHHHHHhcCCCEEEecCCcc--c----------ccccceeeec-------------cccccc------------
Confidence 99999999999999999999976310 0 0000000000 000000
Q ss_pred CCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchh-HHHHHHHHcCCE
Q 005501 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGAT 424 (693)
Q Consensus 346 ~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~ 424 (693)
......++++++|+|||||||.||||+++|+++...+......+++..+|++++.+|+.|..++ ..++.++..|++
T Consensus 121 ---~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~ 197 (471)
T PRK07787 121 ---RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNR 197 (471)
T ss_pred ---cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCE
Confidence 0112356899999999999999999999999999888877778889999999999999999887 568899999999
Q ss_pred EEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceeccc
Q 005501 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (693)
Q Consensus 425 lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (693)
+++.+ ..++..+++.|+ +++|++..+|+++..|.+... ....++++|.+++||+++++.+.+++.+.+ +.+++|.|
T Consensus 198 ~~~~~-~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~-~~~~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~Y 273 (471)
T PRK07787 198 FVHTG-RPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPE-AARALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERY 273 (471)
T ss_pred EEecC-CCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcc-ccccccceeEEEECCCCCCHHHHHHHHHHc-CCCeeccc
Confidence 98876 467889999999 999999999999999987532 234578999999999999999998888765 57899999
Q ss_pred ccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCC-CCCCceeeEEE-----ecccCCCccccccccccccc
Q 005501 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP-DDQPCVGEVGL-----FPLYLGASDRLLNADHEEVY 578 (693)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p-~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~ 578 (693)
|+||++...+.. .......+++|+|++|++++|+|+++++++ .|+. +|||++ ..||++ +++.|++.
T Consensus 274 G~tE~~~~~~~~-~~~~~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~~-~Gei~v~g~~~~~gy~~------~~~~t~~~ 345 (471)
T PRK07787 274 GMTETLITLSTR-ADGERRPGWVGLPLAGVETRLVDEDGGPVPHDGET-VGELQVRGPTLFDGYLN------RPDATAAA 345 (471)
T ss_pred CccccCcceecC-CCCcccCCcccccCCCcEEEEECCCCCCCCCCCCC-ceEEEEECcccchhhcC------Chhhchhc
Confidence 999998643332 223334568999999999999999999997 3431 599998 346665 44567767
Q ss_pred ccccccCCCceeeeecceEEEecCCcEEEEeec-CCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEE
Q 005501 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA-DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (693)
Q Consensus 579 f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~-dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 657 (693)
|..+ .||+|||+|++++||+++++||+ |++||++|++|+|.|||++|. .+|.|++++|++.++...+ +.++
T Consensus 346 ~~~~------~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~ 417 (471)
T PRK07787 346 FTAD------GWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALL-GHPGVREAAVVGVPDDDLG-QRIV 417 (471)
T ss_pred ccCC------CceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHH-hCCCcceEEEEcccccccC-eEEE
Confidence 7543 29999999999999999999996 899999999999999999995 9999999999999887766 8999
Q ss_pred EEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 658 IFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
+||+... ..+.++++++++++|++|+.|..++.
T Consensus 418 a~v~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~ 450 (471)
T PRK07787 418 AYVVGAD--DVAADELIDFVAQQLSVHKRPREVRF 450 (471)
T ss_pred EEEEeCC--CCCHHHHHHHHHhhcccccCCcEEEE
Confidence 9999843 45778999999999999999987764
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=520.87 Aligned_cols=469 Identities=22% Similarity=0.245 Sum_probs=375.3
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++++||++|+++.++ +++||+||+++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 33 ~~~~pd~~a~~~~~~-------~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~ 105 (547)
T PRK06087 33 ARAMPDKIAVVDNHG-------ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLL 105 (547)
T ss_pred HHHCCCceEEEcCCC-------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEeccc
Confidence 367999999997653 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCCCCCCCCCcccHHHHhcccCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (693)
|.++.+++.+++++++++++++++..... ...+.+..+....+. .++.+..... ......+.++......
T Consensus 106 ~~~~~~~l~~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~- 177 (547)
T PRK06087 106 PSWREAELVWVLNKCQAKMFFAPTLFKQT-RPVDLILPLQNQLPQLQQIVGVDKLAP------ATSSLSLSQIIADYEP- 177 (547)
T ss_pred hhcCHHHHHHHHHhcCCeEEEEecccccc-cHHHHHHHHHhhCCCCcEEEEeCCcCC------CcCccCHHHHhccCCc-
Confidence 99999999999999999999998643211 111111122222221 2333322111 0122345555443221
Q ss_pred CCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchh-HHHHHHHHc
Q 005501 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLN 421 (693)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~ 421 (693)
........++++++|+|||||||.||||+++|+++..........++++++|++++..|+.|.+++ ..++.+++.
T Consensus 178 ----~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~ 253 (547)
T PRK06087 178 ----LTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLI 253 (547)
T ss_pred ----ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhc
Confidence 011223467899999999999999999999999998877777777889999999999999999987 467888999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCcee
Q 005501 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (693)
Q Consensus 422 G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (693)
|+++++.+ ..++..+++.|+++++|++..+|+++..++........+++++|.+++||+++++++.+.+... +++++
T Consensus 254 g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~ 330 (547)
T PRK06087 254 GARSVLLD-IFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR--GIKLL 330 (547)
T ss_pred CCEEEecC-CCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc--CCcEE
Confidence 99999986 4678899999999999999988877777776544445567899999999999999988877654 68999
Q ss_pred cccccccccceeccCCcCC-CCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccccc
Q 005501 502 ESCGGTELSSAYIQGSLLQ-PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHE 575 (693)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t 575 (693)
+.||+||++.......... .....++|+|++++.++|+|++++++|.|+. ||+++ +.||++ +++.+
T Consensus 331 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~gy~~------~~~~~ 402 (547)
T PRK06087 331 SVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCE--GEEASRGPNVFMGYLD------EPELT 402 (547)
T ss_pred EEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCcCCCc--ceEEEecccccccccC------CHHHH
Confidence 9999999986544322211 1234578999999999999999999999985 99988 456776 44455
Q ss_pred cccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceE
Q 005501 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (693)
Q Consensus 576 ~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~ 655 (693)
...|.. +.||+|||++++++||+++++||.||+||++|++|+|.+||++|. .+|+|.+++|++.+++..| ++
T Consensus 403 ~~~~~~------~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~-~~~~v~~~~v~~~~~~~~g-~~ 474 (547)
T PRK06087 403 ARALDE------EGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILL-QHPKIHDACVVAMPDERLG-ER 474 (547)
T ss_pred HHHhCC------CCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHH-hCCCeeEEEEEecCCCCcC-ce
Confidence 555543 239999999999999999999999999999999999999999996 8999999999999888777 89
Q ss_pred EEEEEEecC-CCCCChHHHHHHHH-HHHHhhcCCCceec
Q 005501 656 LVIFVVLKK-GFTSQPDKLKMIFS-KAIQSKLNPLFKVW 692 (693)
Q Consensus 656 l~a~vv~~~-~~~~~~~~l~~~l~-~~L~~~m~P~~~v~ 692 (693)
++++|++.+ +...+.+++.+++. ++|+.+++|..+..
T Consensus 475 ~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~ 513 (547)
T PRK06087 475 SCAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYPEHIVV 513 (547)
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHhccccccCCCeEEEE
Confidence 999999876 44566788998885 57999999988765
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-58 Score=517.09 Aligned_cols=471 Identities=20% Similarity=0.178 Sum_probs=371.7
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
+++++|+++|+.+.++ .+||+||.++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 12 ~a~~~p~~~a~~~~~~--------~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~~~v~l 83 (533)
T PRK07798 12 VADAVPDRVALVCGDR--------RLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNV 83 (533)
T ss_pred HHHhCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCeEEEec
Confidence 3478999999999766 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCCCCCCCCCcccHHHHhcccCC
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (693)
++.++.+++.++++++++++++++.... .....+....+. .++.+..... .....+..+++++......
T Consensus 84 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 154 (533)
T PRK07798 84 NYRYVEDELRYLLDDSDAVALVYEREFA------PRVAEVLPRLPKLRTLVVVEDGSG---NDLLPGAVDYEDALAAGSP 154 (533)
T ss_pred CcCCCHHHHHHHHhhcCCCEEEEchhhH------HHHHHHhccCCCccEEEEecCCcc---cccCCccccHHHHHhccCC
Confidence 9999999999999999999999987432 112222222221 1222322111 1111134567776654322
Q ss_pred CCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchh---------cCC------CCCCEEEEeCCc
Q 005501 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---------IDL------KVGDVYCWPTNL 406 (693)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---------~~~------~~~d~~l~~~~~ 406 (693)
...... ..++.++|+|||||||.||||+++|+++.......... ..+ ..+++++..+|+
T Consensus 155 -----~~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 228 (533)
T PRK07798 155 -----ERDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPL 228 (533)
T ss_pred -----cCCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecch
Confidence 011111 23455799999999999999999999987654432211 111 567899999999
Q ss_pred cccchhHHHHHHHHcCCEEEEecC-CCChhhHHHHHHHcCCcEEeechHHHHH-HHhcCc-CCCCCCccccEEEeecCCC
Q 005501 407 GWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKA-WRNTNC-LEGLDWTKIRSFASTGETS 483 (693)
Q Consensus 407 ~~~~~~~~~~~~L~~G~~lvi~~~-~~~~~~~~~~i~~~~vt~l~~~P~~l~~-l~~~~~-~~~~~l~~lr~v~~gGe~l 483 (693)
.|+.+++.++.+|+.|+++++.+. ..++..+++.++++++|.+.++|+.+.. +..... ....+++++|.+++||+++
T Consensus 229 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~ 308 (533)
T PRK07798 229 MHGAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALF 308 (533)
T ss_pred hhhhhHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCC
Confidence 999999999999999999999873 4578899999999999999999866533 333221 2345678999999999999
Q ss_pred CcchHHHHHhhCCCCceecccccccccceeccCCcCCCCccCccC--CCCCCceEEEECCCCCCCCCCCCceeeEEEe--
Q 005501 484 NVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS--TATMTAGLVILDECGVPYPDDQPCVGEVGLF-- 559 (693)
Q Consensus 484 ~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG--~p~~~~~~~ild~~~~~~p~G~~giGel~v~-- 559 (693)
++.+.+++.+.+++..+++.||+||++.+........ ..+.| ++.++..++|+|+++++++.|..+.|+++.+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~---~~~~g~~~~~~~~~~~i~~~~~~~~~~g~~~~g~l~~~~~ 385 (533)
T PRK07798 309 SPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKG---AVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEIGWIARRGH 385 (533)
T ss_pred CHHHHHHHHHHcCCCeEEeeecccccccccccCCCCC---CccCCCCccCCCceEEEECCCCCCCCCCCCCeeEEEeecC
Confidence 9999999988887889999999999976443332211 12334 7889999999999999999998655777663
Q ss_pred --cccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcc
Q 005501 560 --PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADES 637 (693)
Q Consensus 560 --~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~ 637 (693)
.||++ +++.|+..|.. ..|.+||+|||++++++||++++.||.|++||++|++|+|.|||++|. ++|+
T Consensus 386 ~~~gy~~------~~~~t~~~f~~---~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~-~~~~ 455 (533)
T PRK07798 386 IPLGYYK------DPEKTAETFPT---IDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALK-AHPD 455 (533)
T ss_pred ccccccC------ChhhhHHhhcc---CCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHH-hCcc
Confidence 35555 45567777754 246679999999999999999999999999999999999999999995 9999
Q ss_pred cceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 638 ILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 638 V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
|.+++|++.++...+ +.++++++++++...+.++++++++++|+.|++|..++.
T Consensus 456 v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~ 509 (533)
T PRK07798 456 VADALVVGVPDERWG-QEVVAVVQLREGARPDLAELRAHCRSSLAGYKVPRAIWF 509 (533)
T ss_pred ceeEEEEeccCcccC-ceEEEEEEECCCCCCCHHHHHHHHhhhcccCCCCeEEEE
Confidence 999999999887767 889999999887667889999999999999999988764
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-58 Score=520.39 Aligned_cols=471 Identities=22% Similarity=0.241 Sum_probs=370.4
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++++|+++|+++.+. .+||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 33 a~~~p~~~a~~~~~~--------~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~~v~v~ 104 (557)
T PRK07059 33 FRQYADRPAFICMGK--------AITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVN 104 (557)
T ss_pred HHHcCCCceEEEcCc--------eeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcCeEEeccC
Confidence 468999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCc-eEEEcCCCCC-----------------CCCCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK-AIVLPAIGND-----------------VGIPLR 326 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------------~~~~~~ 326 (693)
|.++.+++.+++++++++++|+++.+. .....+....... +++....... ......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (557)
T PRK07059 105 PLYTPRELEHQLKDSGAEAIVVLENFA------TTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWSL 178 (557)
T ss_pred cccCHHHHHHHHHccCceEEEEchhhH------HHHHHhhcccCCceeEEecccccccccccccccccccccccccccCC
Confidence 999999999999999999999987532 1111111111111 1111100000 000011
Q ss_pred CCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchh----cCCC---CCCE
Q 005501 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH----IDLK---VGDV 399 (693)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~----~~~~---~~d~ 399 (693)
++...+.+....... .........++++|+|+|||||||.||||+++|++++.++...... +... ....
T Consensus 179 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (557)
T PRK07059 179 PGHVRFNDALAEGAR----QTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLN 254 (557)
T ss_pred CCcccHHHHhhccCC----CCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcE
Confidence 123345544433221 1112234567899999999999999999999999987655332211 1111 2346
Q ss_pred EEEeCCccccchh-HHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEe
Q 005501 400 YCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478 (693)
Q Consensus 400 ~l~~~~~~~~~~~-~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~ 478 (693)
++...|+.|.++. ...+.++..|++.++.+...++..+++.++++++|.+..+|+++..+.........+++++|.++.
T Consensus 255 ~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~ 334 (557)
T PRK07059 255 FVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANG 334 (557)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEe
Confidence 7788899988775 566788889999888775557888999999999999999999999998876555566789999999
Q ss_pred ecCCCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE
Q 005501 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL 558 (693)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v 558 (693)
||+++++.+.+.+.+.+ ++++++.||+||++..++...........++|+|++|++++|+|++++++|.|+. |||++
T Consensus 335 gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~g~~--Gel~v 411 (557)
T PRK07059 335 GGMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEP--GEICI 411 (557)
T ss_pred ccccCCHHHHHHHHHHh-CCCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEECCCCCCCCCCCc--eEEEE
Confidence 99999999888887665 6899999999999876544433323345789999999999999999999999985 99999
Q ss_pred -----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhc
Q 005501 559 -----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633 (693)
Q Consensus 559 -----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~ 633 (693)
..||++ +++.+...|..+ .||+|||+|++++||+++++||+||+||++|++|+|.|||++|.
T Consensus 412 ~g~~~~~gY~~------~~~~~~~~~~~~------g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~- 478 (557)
T PRK07059 412 RGPQVMAGYWN------RPDETAKVMTAD------GFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVA- 478 (557)
T ss_pred eCCccchhhhc------CHHHHhhhcccC------CceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHH-
Confidence 346665 444565555432 39999999999999999999999999999999999999999995
Q ss_pred cCcccceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 634 ~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
.||+|.+++|+++++...+ +.++++++..++ ..+.++++++++++|+.++.|..+.+
T Consensus 479 ~~~~V~~~~v~~~~~~~~g-e~~~~~v~~~~~-~~~~~~l~~~~~~~l~~~~~P~~i~~ 535 (557)
T PRK07059 479 SHPGVLEVAAVGVPDEHSG-EAVKLFVVKKDP-ALTEEDVKAFCKERLTNYKRPKFVEF 535 (557)
T ss_pred hCCceeEEEEEecccCCCC-eeEEEEEEeCCC-CCCHHHHHHHHHHhcccccCCcEEEE
Confidence 9999999999999888777 899999997653 45678999999999999999988765
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-58 Score=516.83 Aligned_cols=448 Identities=19% Similarity=0.202 Sum_probs=354.6
Q ss_pred CCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-c-CCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 005501 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-F-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (693)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v-~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p 265 (693)
.+|+++|+++.+. .+||+||.++++++|..|.+. + ++||+|+++++|++++++++|||+++|++++|+||
T Consensus 13 ~~p~~~Al~~~~~--------~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~Ga~~v~l~p 84 (540)
T PRK13388 13 AGDDTIAVRYGDR--------TWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALGGYVLVGLNT 84 (540)
T ss_pred ccCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhCCCEEEEecc
Confidence 4699999998766 999999999999999999999 9 89999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCC
Q 005501 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (693)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (693)
.++.+++..++++++++++|+++.... ....+. .....++.+. ...|.++......
T Consensus 85 ~~~~~~l~~~l~~~~~~~~i~~~~~~~------~~~~~~-~~~~~~i~~~-------------~~~~~~~~~~~~~---- 140 (540)
T PRK13388 85 TRRGAALAADIRRADCQLLVTDAEHRP------LLDGLD-LPGVRVLDVD-------------TPAYAELVAAAGA---- 140 (540)
T ss_pred cCChHHHHHHHHhcCCCEEEEChhhhH------HHHhhc-ccCceEEEcc-------------chhhhhhhccccC----
Confidence 999999999999999999999875321 111110 0011222221 0123333321111
Q ss_pred CCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHH-HHHHHHcCCE
Q 005501 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGAT 424 (693)
Q Consensus 346 ~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-~~~~L~~G~~ 424 (693)
..+.....++++++|+|||||||+||||+++|+++.+........++++++|+++..+|+.|..++.. ++.+|..|++
T Consensus 141 -~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~ 219 (540)
T PRK13388 141 -LTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAA 219 (540)
T ss_pred -cCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcE
Confidence 01112346799999999999999999999999999888887778889999999999999999998855 4457889999
Q ss_pred EEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceeccc
Q 005501 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (693)
Q Consensus 425 lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (693)
+++.+ ..++..+++.++++++|++..+|+.+..++...........+++.+ + |+++++.....+.+.+ +++++|.|
T Consensus 220 ~v~~~-~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~~-~-G~~~~~~~~~~~~~~~-~~~l~~~Y 295 (540)
T PRK13388 220 VALPA-KFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVA-F-GNEASPRDIAEFSRRF-GCQVEDGY 295 (540)
T ss_pred EEECC-CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEEE-E-CCCCCHHHHHHHHHHh-CCceeccc
Confidence 98875 4678899999999999999999999999886543222223456643 3 5566777777777665 58899999
Q ss_pred ccccccceeccCCcCCCCccCccCCCCCCceEE-----------EECCCCCCCC-CCCCceeeEEEe------cccCCCc
Q 005501 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLV-----------ILDECGVPYP-DDQPCVGEVGLF------PLYLGAS 566 (693)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~-----------ild~~~~~~p-~G~~giGel~v~------~gy~~~~ 566 (693)
|+||++.+++... ....+++|+|++|++++ ++|++|++++ .|. +|||++. .||++
T Consensus 296 G~tE~~~~~~~~~---~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~--~GEl~v~~g~~~~~gY~~-- 368 (540)
T PRK13388 296 GSSEGAVIVVREP---GTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEA--IGELVNTAGAGFFEGYYN-- 368 (540)
T ss_pred ccccccceeecCC---CCCCCCCCCCCCCcEEEcCCCCccccceeccCccccccCCCc--ceEEEEecCCcccccccC--
Confidence 9999987554321 12456899999998764 5566666664 344 5999984 35555
Q ss_pred ccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEee
Q 005501 567 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV 646 (693)
Q Consensus 567 ~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~ 646 (693)
+++.+++.|. .| ||+|||+|++++||+++++||+||+||++|++|+|.|||++|. .||+|.+|+|+++
T Consensus 369 ----~~~~t~~~~~-----~g--~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~~~V~~~~v~g~ 436 (540)
T PRK13388 369 ----NPEATAERMR-----HG--MYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILL-RHPAINRVAVYAV 436 (540)
T ss_pred ----ChHHHHHHhh-----cC--ceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHH-hCCCceEEEEEEc
Confidence 4556666663 13 9999999999999999999999999999999999999999995 9999999999999
Q ss_pred cCCCCCceEEEEEEEecCCCCCChHHHHHHHHHH--HHhhcCCCceec
Q 005501 647 SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA--IQSKLNPLFKVW 692 (693)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~--L~~~m~P~~~v~ 692 (693)
+++..| +.+++++++.++...+.++++++++.+ |+.|++|..++.
T Consensus 437 ~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~l~~~~~l~~~~~P~~~~~ 483 (540)
T PRK13388 437 PDERVG-DQVMAALVLRDGATFDPDAFAAFLAAQPDLGTKAWPRYVRI 483 (540)
T ss_pred cCCCCC-ceeEEEEEECCCCcCCHHHHHHHHHhhccCCcccCCcEEEE
Confidence 988777 788999988877677888999999875 999999998764
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-58 Score=516.91 Aligned_cols=472 Identities=18% Similarity=0.208 Sum_probs=372.3
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
|+++||+++++.... +..+++||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 20 a~~~~~~~~~~~~~~----~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~v~l~ 95 (542)
T PRK06018 20 ARIHGNREVVTRSVE----GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVN 95 (542)
T ss_pred HHhCCCceEEEeecc----CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhcCeEeeccc
Confidence 478999999985322 1235899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCCCCCCCCCcccHHHHhcccCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (693)
|.++.+++..+++.+++++++++..+. +.+.++....+. .++++........ ....+...|.++......
T Consensus 96 ~~~~~~~l~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 167 (542)
T PRK06018 96 PRLFPEQIAWIINHAEDRVVITDLTFV------PILEKIADKLPSVERYVVLTDAAHMPQ-TTLKNAVAYEEWIAEADG- 167 (542)
T ss_pred cccCHHHHHHHHhccCCCEEEEccccH------HHHHHHHhhCCCccEEEEecccccccc-cCccccccHHHHhccCCc-
Confidence 999999999999999999999987532 222222222221 2222221111000 011123356665543321
Q ss_pred CCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHH-H-HHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHH
Q 005501 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI-R-CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 420 (693)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~-~-~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~ 420 (693)
........++++++|+|||||||.||||+++|++.+ + ........++++.+|+++...|++|+.+....+.++.
T Consensus 168 ----~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~~~~~~~~ 243 (542)
T PRK06018 168 ----DFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAFSAPS 243 (542)
T ss_pred ----ccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhHHHHhhhh
Confidence 111223466889999999999999999999999742 2 2233345677889999999999999888876778899
Q ss_pred cCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCce
Q 005501 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (693)
Q Consensus 421 ~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (693)
.|+++++.....++..+++.++++++|++.++|+++..|.+.......++++||.+++|||++++++.+++++ + +.++
T Consensus 244 ~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~-~-~~~~ 321 (542)
T PRK06018 244 MGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED-M-GVEV 321 (542)
T ss_pred cCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH-h-CCCe
Confidence 9999998765667889999999999999999999999998765444556789999999999999999999887 4 7899
Q ss_pred ecccccccccceeccCCcCCC----------CccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEEe-----cccCCC
Q 005501 501 IESCGGTELSSAYIQGSLLQP----------QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGA 565 (693)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~----------~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v~-----~gy~~~ 565 (693)
++.||+||++.+.+.+..... ....++|+|.+|++++|+|++++++|.+....||+++. .||++.
T Consensus 322 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~ 401 (542)
T PRK06018 322 RHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYRV 401 (542)
T ss_pred EeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECCCCCCCCCCCCceeEEEEecCCcchhhhcC
Confidence 999999999875543321110 11357899999999999999999998642226999983 344431
Q ss_pred cccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEe
Q 005501 566 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAIS 645 (693)
Q Consensus 566 ~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~ 645 (693)
+...+. ..+||+|||++++++||++++.||.||+||++|++|++.|||++|. .||+|.+|+|++
T Consensus 402 ---------~~~~~~------~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~-~~~~v~~~~v~~ 465 (542)
T PRK06018 402 ---------DGEILD------DDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAV-GHPKVAEAAVIG 465 (542)
T ss_pred ---------cccEec------CCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHH-hCCcceeEEEEe
Confidence 111221 2349999999999999999999999999999999999999999995 899999999999
Q ss_pred ecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 646 VSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 646 ~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
.+++..+ +.++++|++.++...+.++++++++++|+.|+.|..++.
T Consensus 466 ~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~ 511 (542)
T PRK06018 466 VYHPKWD-ERPLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVAF 511 (542)
T ss_pred ccCCCcC-ceeEEEEEeCCCCCCCHHHHHHHHHhhCccccCCcEEEE
Confidence 9988777 899999999887777888999999999999999988764
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-58 Score=517.26 Aligned_cols=471 Identities=21% Similarity=0.204 Sum_probs=369.9
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++.+|+++|+++.+. .+||.||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 31 ~~~~p~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~ 102 (541)
T TIGR03205 31 AADYGPRPALEFRDR--------PITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVHLS 102 (541)
T ss_pred HHHcCCCceEEECCc--------EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcCeEEEecC
Confidence 368999999998766 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhc-CCCceEEEcCCCC-CC-----CCCCCCCcccHHHHhc
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-APLKAIVLPAIGN-DV-----GIPLREQDLSWKDFLS 337 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~ 337 (693)
|.++.+++.+++++++++++++++.. ...+...+.... ....++++..... .. .........++.++..
T Consensus 103 ~~~~~~~l~~~i~~~~~~~vi~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (541)
T TIGR03205 103 PLDGERALSHKLSDSGARLLITSDLA----ALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVK 178 (541)
T ss_pred CCCCHHHHHHHHhhcCceEEEEeCch----hhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccHHHHHh
Confidence 99999999999999999999998631 011111111111 1122222222110 00 0011122345666654
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhch-----hcCCCCCCEEEEeCCccccchh
Q 005501 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-----HIDLKVGDVYCWPTNLGWVMGP 412 (693)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~-----~~~~~~~d~~l~~~~~~~~~~~ 412 (693)
.... ........++++++++|||||||.||||+++|+++.+....... .......+++++..|++|.++.
T Consensus 179 ~~~~-----~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~ 253 (541)
T TIGR03205 179 GAAA-----PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYAL 253 (541)
T ss_pred cCCC-----CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccHHHHHHH
Confidence 3221 11112345789999999999999999999999998765432211 1122345789999999998876
Q ss_pred -HHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHH
Q 005501 413 -VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWL 491 (693)
Q Consensus 413 -~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~ 491 (693)
..++.++..|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||+++++++.+++
T Consensus 254 ~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~~ 332 (541)
T TIGR03205 254 TVILLRSLRRGDLISLHQ-RFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFF 332 (541)
T ss_pred HHHHHHHHhcCCEEEecC-CCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHHH
Confidence 45778899999988775 5678999999999999999999999999987543344567899999999999999998888
Q ss_pred HhhCCCCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEE--CCCCCCCCCCCCceeeEEE-----ecccCC
Q 005501 492 SSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL--DECGVPYPDDQPCVGEVGL-----FPLYLG 564 (693)
Q Consensus 492 ~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~il--d~~~~~~p~G~~giGel~v-----~~gy~~ 564 (693)
.+.+ +.++++.||+||++...+..........+++|+|++++.++|+ |+++++++.|+. |||++ ..||++
T Consensus 333 ~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~ 409 (541)
T TIGR03205 333 ERKT-GLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEV--GELRIRGPNVTRGYWN 409 (541)
T ss_pred HHHh-CCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCccCCCCCe--eEEEEecCCccccccC
Confidence 7655 5889999999999876554433333445789999999998875 677899999984 99998 345665
Q ss_pred CcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEE
Q 005501 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644 (693)
Q Consensus 565 ~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv 644 (693)
+++.+++.|.. + ||+|||++++++||+++++||.||+||++|++|+|.|||++|. +||+|.+++|+
T Consensus 410 ------~~~~~~~~~~~-----~--~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~-~~~~v~~~~v~ 475 (541)
T TIGR03205 410 ------RPEESAEAFVG-----D--RFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIY-EHPGVQEVIVI 475 (541)
T ss_pred ------ChhhhHhhhcc-----C--CcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHH-hCCCeeeEEEE
Confidence 44466666642 2 8999999999999999999999999999999999999999996 89999999999
Q ss_pred eecCCCCCceEEEEEEEecCCC-CCChHHHHHHHHHHHHhhcCCCceec
Q 005501 645 SVSPAGGGPEVLVIFVVLKKGF-TSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 645 ~~~~~~~g~~~l~a~vv~~~~~-~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
+++++..+ +.++++++++++. ..+.++++++++++|+.|++|..++.
T Consensus 476 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~ 523 (541)
T TIGR03205 476 GIPDQYRG-EAAKAFVKLRPGAKPFSLDELRAFLAGKLGKHELPVAVEF 523 (541)
T ss_pred ecCCcccC-ceEEEEEEECCCCCcCCHHHHHHHHHhhcccccCCcEEEE
Confidence 99987776 8899999988764 35778999999999999999988765
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-58 Score=518.82 Aligned_cols=470 Identities=18% Similarity=0.176 Sum_probs=368.4
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++.+|+++|++..+. ++||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 20 a~~~p~~~a~~~~~~--------~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G~~~v~l~ 91 (540)
T PRK06164 20 ARARPDAVALIDEDR--------PLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVN 91 (540)
T ss_pred HHhCCCCeEEecCCC--------cccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEecC
Confidence 478999999996555 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcC------CCceEEEcCCCCCCCCCCCCCcccHHHHhcc
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA------PLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (693)
+..+.+++.+++++++++++|+++++.. .+....+.... ...++.+......... .....+.+....
T Consensus 92 ~~~~~~~l~~~i~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 164 (540)
T PRK06164 92 TRYRSHEVAHILGRGRARWLVVWPGFKG----IDFAAILAAVPPDALPPLRAIAVVDDAADATPA---PAPGARVQLFAL 164 (540)
T ss_pred CCCCcHHHHHHHHhcCccEEEEcccccc----ccHHHHhhcccccccCCcceEEEeccCcccCCC---CCcccccccccc
Confidence 9999999999999999999999876421 11111111100 0122222211000000 000111111111
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHH
Q 005501 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (693)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 418 (693)
.... ...........++++++++|||||||+||||+++|+++.+.+......+++.+++++++++|++|.+++..++.+
T Consensus 165 ~~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~ 243 (540)
T PRK06164 165 PDPA-PPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAVLLAALPFCGVFGFSTLLGA 243 (540)
T ss_pred cccC-CcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHHH
Confidence 0000 000001122346899999999999999999999999999888888888899999999999999999999889999
Q ss_pred HHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeec-CCCCcchHHHHHhhCCC
Q 005501 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG-ETSNVDDDLWLSSKAWY 497 (693)
Q Consensus 419 L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG-e~l~~~~~~~~~~~~~~ 497 (693)
+..|+++++.+ ..++..+++.|+++++|++.++|+++..|.+.. ....+++++|.+.++| .+...+..+++... +
T Consensus 244 l~~G~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~ 319 (540)
T PRK06164 244 LAGGAPLVCEP-VFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFPSARLFGFASFAPALGELAALARAR--G 319 (540)
T ss_pred HhcCceEEecC-CCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCcceeeeeeccCCcchHHHHHHHhhc--C
Confidence 99999998876 567889999999999999999999999998762 3445688999887766 44445556666544 6
Q ss_pred CceecccccccccceeccCCcCC--CCccCccCCCC-CCceEEEEC-CCCCCCCCCCCceeeEEE-----ecccCCCccc
Q 005501 498 NAIIESCGGTELSSAYIQGSLLQ--PQAFGAFSTAT-MTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDR 568 (693)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~iG~p~-~~~~~~ild-~~~~~~p~G~~giGel~v-----~~gy~~~~~~ 568 (693)
+++++.||+||++..++...... .......|.|+ +++.++|+| +++++++.|+ +|||++ ..||++
T Consensus 320 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~--~Gel~v~g~~~~~gY~~---- 393 (540)
T PRK06164 320 VPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGE--SGEIEIRAPSLMRGYLD---- 393 (540)
T ss_pred CceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCC--eeEEEEecccccccccC----
Confidence 88999999999987655443322 12234567876 899999999 5689999998 499999 457776
Q ss_pred ccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecC
Q 005501 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (693)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~ 648 (693)
+++.|+..|..+ +||+|||+|++++||+++|.||.||+||++|++|+|.|||++|. .||+|.+++|++++.
T Consensus 394 --~~~~t~~~~~~~------~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~-~~~~v~~~~v~~~~~ 464 (540)
T PRK06164 394 --NPDATARALTDD------GYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALE-ALPGVAAAQVVGATR 464 (540)
T ss_pred --CchhhhhcccCC------CceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHH-hCCCceeEEEEecCC
Confidence 555777777543 39999999999999999999999999999999999999999995 999999999999884
Q ss_pred CCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 649 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
.++ +.+++++++.++...+.++++++|+++||.|++|..++.
T Consensus 465 -~~~-~~~~~~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~ 506 (540)
T PRK06164 465 -DGK-TVPVAFVIPTDGASPDEAGLMAACREALAGFKVPARVQV 506 (540)
T ss_pred -CCc-eeEEEEEEeCCCCCCCHHHHHHHHHhhcccCcCCcEEEE
Confidence 344 789999999887667889999999999999999987764
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-59 Score=538.57 Aligned_cols=445 Identities=17% Similarity=0.179 Sum_probs=331.4
Q ss_pred cCCCCCCcEEEEEecC-----------CCC--------CCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH
Q 005501 185 HRRKEDNTVAIVWRED-----------RCD--------ESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~-----------~~~--------~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~ 244 (693)
+++++||++|+.+... .+. .+..+.+||+||.++++++|++|+++ +++||+|+|+++|++
T Consensus 78 ~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~ 157 (700)
T PTZ00216 78 ICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRW 157 (700)
T ss_pred HHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCH
Confidence 4578999999998521 000 12457999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhc--CC-CceEEEcCCCCCC
Q 005501 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA--AP-LKAIVLPAIGNDV 321 (693)
Q Consensus 245 ~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~ 321 (693)
+|++++|||+++|++++|+++.++++++.+++++++++++|++.... ..+...... .+ ..++.++......
T Consensus 158 e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~------~~l~~~~~~~~~~~~~ii~~~~~~~~~ 231 (700)
T PTZ00216 158 EWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNV------PNLLRLMKSGGMPNTTIIYLDSLPASV 231 (700)
T ss_pred HHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHH------HHHHHhhhhccCCceEEEEECCCcccc
Confidence 99999999999999999999999999999999999999999986421 111111111 11 1233332211100
Q ss_pred CCCCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhc-----CCCC
Q 005501 322 GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-----DLKV 396 (693)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~ 396 (693)
........+|+++......... .........++|++||+|||||||.||||+++|+++++.+.+....+ .+++
T Consensus 232 -~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~ 309 (700)
T PTZ00216 232 -DTEGCRLVAWTDVVAKGHSAGS-HHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIGPPEE 309 (700)
T ss_pred -ccCCceEEEHHHHHHhCCcccc-ccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccCCCCC
Confidence 0011234567777654421000 11112334679999999999999999999999999988776654433 2478
Q ss_pred CCEEEEeCCccccchhHHHHHHHHcCCEEEEecCCCChhhHHH-------HHHHcCCcEEeechHHHHHHHhcCcC----
Q 005501 397 GDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGK-------FVQDAGVTVLGTVPSLVKAWRNTNCL---- 465 (693)
Q Consensus 397 ~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvi~~~~~~~~~~~~-------~i~~~~vt~l~~~P~~l~~l~~~~~~---- 465 (693)
+|++++++|++|.++.......+..|+++++.+ +..+.+ .++++++|++.++|++++.+.+....
T Consensus 310 ~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~~----~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~ 385 (700)
T PTZ00216 310 DETYCSYLPLAHIMEFGVTNIFLARGALIGFGS----PRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPP 385 (700)
T ss_pred CCEEEEEChHHHHHHHHHHHHHHHcCCEEEECC----HHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhc
Confidence 899999999999888755555677788776532 333433 68899999999999999887642100
Q ss_pred ---------------------CCCC----------------CccccEEEeecCCCCcchHHHHHhhCCCCceeccccccc
Q 005501 466 ---------------------EGLD----------------WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 508 (693)
Q Consensus 466 ---------------------~~~~----------------l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 508 (693)
...+ .+++|.+++||+++++++.++++..+ + +++|+||+||
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~-~-~l~~~YG~TE 463 (700)
T PTZ00216 386 VGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF-G-MVIQGWGLTE 463 (700)
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHh-h-hHhhccCccc
Confidence 0000 15799999999999999988776654 4 8999999999
Q ss_pred ccceeccCCcCCCCccCccCCCCCCceEEEECCCCC--CCCCCCCceeeEEE-----ecccCCCcccccccccccccccc
Q 005501 509 LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGV--PYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRG 581 (693)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~--~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f~~ 581 (693)
+++..+.... .....+++|+|++|++++|+|+++. ..+++. .|||+| +.||++ +++.|++.|..
T Consensus 464 t~~~~~~~~~-~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~--~GEL~vrG~~v~~GY~~------~pe~T~~~f~~ 534 (700)
T PTZ00216 464 TVCCGGIQRT-GDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEP--RGEILLRGPFLFKGYYK------QEELTREVLDE 534 (700)
T ss_pred ccccccccCC-CCCCCCCcCCcCCCeEEEEeechhhccCCCCCC--CceEEEcCCcccchhcC------ChhHhhhhccc
Confidence 9865443332 3345689999999999999997652 234444 489988 567777 56688888865
Q ss_pred cccCCCceeeeecceEEEecCCcEEEEeecCCccc-cCCeeeehHHHHHHHhccCccccee--EEEeecCCCCCceEEEE
Q 005501 582 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN-LGGIKTSSVEIERVCDQADESILET--AAISVSPAGGGPEVLVI 658 (693)
Q Consensus 582 ~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik-~~G~ri~~~eIE~~L~~~~p~V~~a--~Vv~~~~~~~g~~~l~a 658 (693)
++ ||+|||+|++++||+|+|+||+||+|| ++|++|+|+|||++|. +||.|.++ +|++.++ . ..++|
T Consensus 535 dG------w~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~-~~p~V~~~~~~v~~~~~---~-~~l~a 603 (700)
T PTZ00216 535 DG------WFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYG-QNELVVPNGVCVLVHPA---R-SYICA 603 (700)
T ss_pred cC------CeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHh-cCcCcccceEEEEEecC---C-ceEEE
Confidence 43 999999999999999999999999999 8999999999999995 99999973 4444322 2 78999
Q ss_pred EEEec
Q 005501 659 FVVLK 663 (693)
Q Consensus 659 ~vv~~ 663 (693)
+|+++
T Consensus 604 ~vv~~ 608 (700)
T PTZ00216 604 LVLTD 608 (700)
T ss_pred EEecC
Confidence 99975
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=515.66 Aligned_cols=444 Identities=17% Similarity=0.155 Sum_probs=358.7
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
+++.+|+++|+++.+. .+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 44 ~a~~~p~~~a~~~~~~--------~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G~v~vpl 115 (516)
T PRK13383 44 TAARWPGRTAIIDDDG--------ALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPI 115 (516)
T ss_pred HHHHCCCCcEEEeCCC--------cEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEEEc
Confidence 3468999999998665 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCC
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (693)
++.++.+++..++++++++++++++.+.. .+.. ....+..+... . ... ... .
T Consensus 116 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~-~~~~~~~~~~~-----------~---~~~-~~~-~-- 167 (516)
T PRK13383 116 STEFRSDALAAALRAHHISTVVADNEFAE---------RIAG-ADDAVAVIDPA-----------T---AGA-EES-G-- 167 (516)
T ss_pred CccCCHHHHHHHHhcCCCCEEEEchhHHH---------HHHh-hhcceEEeccc-----------h---hhh-hcC-C--
Confidence 99999999999999999999999875321 1111 11122222110 0 000 000 0
Q ss_pred CCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHH--HHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHc
Q 005501 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR--CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (693)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~--~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~ 421 (693)
..+...++.++|+|||||||+||||+++|+.... ........+++.++|+++...|++|.+++..++.++..
T Consensus 168 ------~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~~~~~~l~~ 241 (516)
T PRK13383 168 ------GRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLGMLMLTIAL 241 (516)
T ss_pred ------CCCCCCCCCcEEEECCCCCCCCCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHHHHHHHHhc
Confidence 0111235678999999999999999999974321 11222345678899999999999999999888889999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcC--CCCCCccccEEEeecCCCCcchHHHHHhhCCCCc
Q 005501 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA 499 (693)
Q Consensus 422 G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 499 (693)
|+++++.. ..+++.+++.++++++|.+.++|+++..|...... ...+++++|.+++||+++++++.+++.+.+ +..
T Consensus 242 G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~ 319 (516)
T PRK13383 242 GGTVLTHR-HFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTY-GDI 319 (516)
T ss_pred CCEEEECC-CCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHc-Cch
Confidence 99998765 56788999999999999999999999999865321 233578999999999999999999988876 478
Q ss_pred eecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEEe-----cccCCCccccccccc
Q 005501 500 IIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADH 574 (693)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v~-----~gy~~~~~~~~~~~~ 574 (693)
+++.||+||++..............+++|+|++|++++|+|+++++++.|+. |||++. .+|.+ ...
T Consensus 320 v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~g~~~~~~Y~~-------~~~ 390 (516)
T PRK13383 320 LYNGYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRVT--GRIFVGGELAGTRYTD-------GGG 390 (516)
T ss_pred hhhcccccccccceeccccccccCCCcccCCCCCcEEEEECCCCCCCCCCCc--eEEEEecCcccccccC-------Cch
Confidence 9999999999865443332223345789999999999999999999999985 999983 33332 110
Q ss_pred ccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCce
Q 005501 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (693)
Q Consensus 575 t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~ 654 (693)
..+ .+ .||+|||+|++++||++++.||.||+||++|++|+|.|||.+|. +||+|.+++|+++++...+ +
T Consensus 391 --~~~-----~~--g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~-~~~~v~~~~vv~~~~~~~g-~ 459 (516)
T PRK13383 391 --KAV-----VD--GMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALA-AHPAVADNAVIGVPDERFG-H 459 (516)
T ss_pred --hhe-----ec--CceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccccccC-c
Confidence 111 12 39999999999999999999999999999999999999999995 9999999999999988777 8
Q ss_pred EEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 655 VLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
.++++|+++++...+.++++++++++|+.++.|..+..
T Consensus 460 ~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 497 (516)
T PRK13383 460 RLAAFVVLHPGSGVDAAQLRDYLKDRVSRFEQPRDINI 497 (516)
T ss_pred eEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEE
Confidence 99999999876666778999999999999999987764
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-58 Score=520.48 Aligned_cols=471 Identities=19% Similarity=0.214 Sum_probs=370.7
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHH-hh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
++++|+++|+++.++ .+||+||.++++++|+.|. +. +++||+|+++++|++++++++|||+++|++++|+
T Consensus 35 ~~~~~~~~a~~~~~~--------~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 106 (560)
T PRK08751 35 VAKFADRPAYHSFGK--------TITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNV 106 (560)
T ss_pred HHhCCCCceEEECCc--------eeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhCeEEecc
Confidence 468999999998766 9999999999999999997 57 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCC-------------------CCCC
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGND-------------------VGIP 324 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~ 324 (693)
+|.++.+++..++++++++++++++... ..+.......+...++....... ....
T Consensus 107 ~p~~~~~~~~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (560)
T PRK08751 107 NPLYTPRELKHQLIDSGASVLVVIDNFG------TTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEY 180 (560)
T ss_pred CccCCHHHHHHHHHhcCCeEEEEcchhH------HHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhcccccc
Confidence 9999999999999999999999987532 11111111112111111100000 0000
Q ss_pred CCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcC----CCCC-CE
Q 005501 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID----LKVG-DV 399 (693)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~----~~~~-d~ 399 (693)
.......|.+....... .........++++++++|||||||+||||+++|+++...+.+....++ +.++ ++
T Consensus 181 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (560)
T PRK08751 181 RINGAIRFREALALGRK----HSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEV 256 (560)
T ss_pred CCCccccHHHHHhccCC----CCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccccCCCCce
Confidence 00122334443332211 111223346789999999999999999999999999887766554443 3344 56
Q ss_pred EEEeCCccccchh-HHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEe
Q 005501 400 YCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478 (693)
Q Consensus 400 ~l~~~~~~~~~~~-~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~ 478 (693)
++...++.|.+++ ...+.++..|++.++.....++..+++.++++++|++..+|+++..+.+.......++++||.+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~ 336 (560)
T PRK08751 257 VITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLG 336 (560)
T ss_pred EEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeee
Confidence 6777888888886 345677888988888765567889999999999999999999999998865545567889999999
Q ss_pred ecCCCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE
Q 005501 479 TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL 558 (693)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v 558 (693)
||+++++.+.+.+++.+ ++++++.||+||++..++..........+++|+|+++++++|+|+++++++.|+. |||++
T Consensus 337 gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~--Gel~v 413 (560)
T PRK08751 337 GGMAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAIGEI--GELCI 413 (560)
T ss_pred CCCCCCHHHHHHHHHHh-CCeEEEeeccccCCCceecccccccccCCCcCccCCCceEEEECCCCCCCCCCCc--eEEEE
Confidence 99999999988887765 6789999999999875544333223445789999999999999999999999984 99998
Q ss_pred -----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhc
Q 005501 559 -----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633 (693)
Q Consensus 559 -----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~ 633 (693)
..||++ +++.++.+|.. ++||+|||+|++++||++++.||.||+||++|++|+|.|||++|.
T Consensus 414 ~~~~~~~gy~~------~~~~~~~~~~~------~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~- 480 (560)
T PRK08751 414 KGPQVMKGYWK------RPEETAKVMDA------DGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIA- 480 (560)
T ss_pred ecCccchhhcC------Chhhhhhcccc------CCCccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHH-
Confidence 356666 45566666643 239999999999999999999999999999999999999999995
Q ss_pred cCcccceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 634 ~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
.||+|.+|+|+++++...| +.++++++... ...+.++++++++++|+.|+.|..+++
T Consensus 481 ~~~~v~~~~v~~~~~~~~g-e~~~~~v~~~~-~~~~~~~l~~~~~~~l~~~~~P~~v~~ 537 (560)
T PRK08751 481 MMPGVLEVAAVGVPDEKSG-EIVKVVIVKKD-PALTAEDVKAHARANLTGYKQPRIIEF 537 (560)
T ss_pred hCcCeeeeEEEecCCCCCC-ceEEEEEEcCC-CCCCHHHHHHHHHHhhhhccCCeEEEE
Confidence 9999999999999987777 78888887653 356778999999999999999998765
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-59 Score=531.11 Aligned_cols=463 Identities=15% Similarity=0.110 Sum_probs=352.6
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++++|+++|+++.+. .+.++++||+||.++++++|++|.+. +++||+|+++++|+++|++++|||+++|++++|++
T Consensus 49 a~~~p~~~a~~~~~~---~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~Gav~vpl~ 125 (614)
T PRK08180 49 AQEAPDRVFLAERGA---DGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVS 125 (614)
T ss_pred HHHCCCCceeeeccC---CCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeeec
Confidence 468999999987532 12245899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCC-----HHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhccc
Q 005501 265 DSFA-----AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (693)
Q Consensus 265 p~~~-----~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (693)
|.++ .+++.+++++++++++|+++.... ...+.... .....++...... ......+|.++....
T Consensus 126 ~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~-~~~~~~i~~~~~~------~~~~~~~~~~~~~~~ 194 (614)
T PRK08180 126 PAYSLVSQDFGKLRHVLELLTPGLVFADDGAAF----ARALAAVV-PADVEVVAVRGAV------PGRAATPFAALLATP 194 (614)
T ss_pred cccccccCCHHHHHHHHhcCCCcEEEEcCHHHH----HHHHhhhc-cCCceEEEecCCC------CCcccccHHHHhccc
Confidence 9998 799999999999999999753100 00000000 0111222221100 001124566665432
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCC--CCCEEEEeCCccccchh-HHHH
Q 005501 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLK--VGDVYCWPTNLGWVMGP-VILF 416 (693)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~--~~d~~l~~~~~~~~~~~-~~~~ 416 (693)
.. ...........++++++|+|||||||.||||++||+++.+.+......+++. .++++++++|++|.++. +.++
T Consensus 195 ~~--~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~ 272 (614)
T PRK08180 195 PT--AAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLG 272 (614)
T ss_pred cc--cchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHH
Confidence 11 0001111234578999999999999999999999999988877766666653 56899999999999887 5678
Q ss_pred HHHHcCCEEEEecCCCCh---hhHHHHHHHcCCcEEeechHHHHHHHhcCc----CCCCCCccccEEEeecCCCCcchHH
Q 005501 417 SSFLNGATLALYQGSPLE---RSFGKFVQDAGVTVLGTVPSLVKAWRNTNC----LEGLDWTKIRSFASTGETSNVDDDL 489 (693)
Q Consensus 417 ~~L~~G~~lvi~~~~~~~---~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~----~~~~~l~~lr~v~~gGe~l~~~~~~ 489 (693)
.+|+.|+++++.+..+++ ..+++.++++++|+++++|+++..|++... .....+++||.+++||+++++++.+
T Consensus 273 ~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~~ 352 (614)
T PRK08180 273 IVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVWD 352 (614)
T ss_pred HHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHHH
Confidence 899999999997644443 467888999999999999999999876421 1233578999999999999999988
Q ss_pred HHHhh----CC-CCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----e
Q 005501 490 WLSSK----AW-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----F 559 (693)
Q Consensus 490 ~~~~~----~~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~ 559 (693)
++.+. ++ ++++++.||+||++...+.... .....+++|+|++|++++|+|+. . .|||++ +
T Consensus 353 ~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~v~i~d~~-------~--~GEi~vrg~~v~ 422 (614)
T PRK08180 353 RLDRVAEATCGERIRMMTGLGMTETAPSATFTTG-PLSRAGNIGLPAPGCEVKLVPVG-------G--KLEVRVKGPNVT 422 (614)
T ss_pred HHHHHHHhhcCCCceeeeeecccccCCceEeccc-ccCCCCcccCccCCcEEEEecCC-------C--CcEEEEecCccc
Confidence 88764 22 3679999999999865443332 23456799999999999999853 2 389988 4
Q ss_pred cccCCCcccccccccccccccccccCCCceeeeecceEEE----ecCCcEEEEeecCCcccc-CCeeee--hHHHHHHHh
Q 005501 560 PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR----TVGGYIIVQGRADDTMNL-GGIKTS--SVEIERVCD 632 (693)
Q Consensus 560 ~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~----~~dG~l~~~GR~dd~ik~-~G~ri~--~~eIE~~L~ 632 (693)
.||++ +++.|++.|..+ +||+|||+|++ ++||+|+|+||+||+||+ +|++|+ +.|||.++.
T Consensus 423 ~GY~~------~p~~t~~~~~~d------gw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~ 490 (614)
T PRK08180 423 PGYWR------APELTAEAFDEE------GYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSA 490 (614)
T ss_pred hhhcC------ChhHhHhhcccC------CceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhh
Confidence 57776 455777777532 39999999999 468999999999999985 698776 788999985
Q ss_pred ccCcccceeEEEeecCCCCCceEEEEEEEecCCC---------------CCChHHHHHHHHHHHHhhc--------CCCc
Q 005501 633 QADESILETAAISVSPAGGGPEVLVIFVVLKKGF---------------TSQPDKLKMIFSKAIQSKL--------NPLF 689 (693)
Q Consensus 633 ~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~---------------~~~~~~l~~~l~~~L~~~m--------~P~~ 689 (693)
.||+|++|+|++.++ +.++|+|+++++. ..+.++|+++++++|..+. .|..
T Consensus 491 -~~p~V~~a~V~g~~~-----~~~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~p~~ 564 (614)
T PRK08180 491 -GAPLVQDVVITGHDR-----DEIGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQATGSSTRVAR 564 (614)
T ss_pred -cCchhheEEEEcCCC-----CceEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhccccHhheeE
Confidence 899999999999875 4688999987541 1355789999999999998 6766
Q ss_pred eec
Q 005501 690 KVW 692 (693)
Q Consensus 690 ~v~ 692 (693)
++.
T Consensus 565 ~~~ 567 (614)
T PRK08180 565 ALL 567 (614)
T ss_pred EEE
Confidence 653
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-58 Score=513.77 Aligned_cols=447 Identities=19% Similarity=0.204 Sum_probs=359.2
Q ss_pred CCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCC
Q 005501 189 EDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (693)
Q Consensus 189 ~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~ 266 (693)
.++++|+++.+. ++||+||.++++++|++|+++ ++++++|+++++|++++++++|||+++|++++|+++.
T Consensus 16 ~~~~~a~~~~~~--------~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~~v~l~~~ 87 (529)
T PRK07867 16 EDDDRGLYFEDS--------FTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALSGIVPVGLNPT 87 (529)
T ss_pred ccCCceEEECCc--------EEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhcCCEEEEecCC
Confidence 378999998766 999999999999999999996 8899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCCC
Q 005501 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN 346 (693)
Q Consensus 267 ~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (693)
++.+++.+++++++++++|+++.... ....+ .....++.. ....|.+++..... .
T Consensus 88 ~~~~~l~~~l~~~~~~~li~~~~~~~------~~~~~----~~~~~~~~~-----------~~~~~~~~l~~~~~----~ 142 (529)
T PRK07867 88 RRGAALARDIAHADCQLVLTESAHAE------LLDGL----DPGVRVINV-----------DSPAWADELAAHRD----A 142 (529)
T ss_pred CChHHHHHHHHhCCCeEEEECHhHHH------HHHhh----ccCceEEEe-----------ccccHHHHhcccCC----C
Confidence 99999999999999999999975421 11111 111111111 01124444332211 1
Q ss_pred CCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhH-HHHHHHHcCCEE
Q 005501 347 YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATL 425 (693)
Q Consensus 347 ~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~L~~G~~l 425 (693)
........++++++|+|||||||.||||+++|+++..........++++.+|+++..+|++|..+++ .++.++..|+++
T Consensus 143 ~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~ 222 (529)
T PRK07867 143 EPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASI 222 (529)
T ss_pred CCCcccCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceE
Confidence 1122234678999999999999999999999999988888887888999999999999999999884 466789999999
Q ss_pred EEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceecccc
Q 005501 426 ALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (693)
Q Consensus 426 vi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (693)
++.+ ..++..+++.++++++|++.++|+.+..++..........+++|. ++||+.+++.. .++.+.+ ++++++.||
T Consensus 223 ~~~~-~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~-~~gg~~~~~~~-~~~~~~~-g~~l~~~YG 298 (529)
T PRK07867 223 ALRR-KFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRI-VYGNEGAPGDI-ARFARRF-GCVVVDGFG 298 (529)
T ss_pred EecC-CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEE-EecCCCChHHH-HHHHHHh-CCcEEEeec
Confidence 8876 467889999999999999999999999988754332223457884 56888887665 4555555 688999999
Q ss_pred cccccceeccCCcCCCCccCccCCCCCCceEEEEC-CCCCCCCCCC----------CceeeEEE------ecccCCCccc
Q 005501 506 GTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQ----------PCVGEVGL------FPLYLGASDR 568 (693)
Q Consensus 506 ~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild-~~~~~~p~G~----------~giGel~v------~~gy~~~~~~ 568 (693)
+||++...... + ....+++|.|+++ ++|+| +++++++.|+ ..+|||++ ..||++
T Consensus 299 ~TE~~~~~~~~-~--~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~---- 369 (529)
T PRK07867 299 STEGGVAITRT-P--DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYN---- 369 (529)
T ss_pred ccccccccccC-C--CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccC----
Confidence 99998644322 1 1234678999999 67888 5688888887 00399987 356665
Q ss_pred ccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecC
Q 005501 569 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648 (693)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~ 648 (693)
+++.+++.|. .| ||+|||+|++++||+++|+||.||+||++|++|+|.|||++|. .||+|.+|+|+++++
T Consensus 370 --~~~~~~~~~~-----~g--~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~~~V~g~~~ 439 (529)
T PRK07867 370 --DPEADAERMR-----GG--VYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILL-RYPDATEVAVYAVPD 439 (529)
T ss_pred --ChHhhhhhhc-----CC--eEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHH-hCCCeeEEEEEeccC
Confidence 4445655553 13 9999999999999999999999999999999999999999996 999999999999999
Q ss_pred CCCCceEEEEEEEecCCCCCChHHHHHHHHHH--HHhhcCCCceec
Q 005501 649 AGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA--IQSKLNPLFKVW 692 (693)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~--L~~~m~P~~~v~ 692 (693)
+..| +++++++++.++...+.++++++++++ |+.|+.|..++.
T Consensus 440 ~~~g-~~~~a~vv~~~~~~~~~~~l~~~~~~~~~l~~~~~P~~i~~ 484 (529)
T PRK07867 440 PVVG-DQVMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSYVRV 484 (529)
T ss_pred CCCC-eeEEEEEEECCCCCCCHHHHHHHHHhhccCCcccCCeEEEE
Confidence 8887 899999999887778889999999886 999999998765
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-59 Score=535.34 Aligned_cols=453 Identities=17% Similarity=0.138 Sum_probs=339.6
Q ss_pred cCCCCCCcEEEEEe-----------cCC----CCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHH
Q 005501 185 HRRKEDNTVAIVWR-----------EDR----CDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVI 248 (693)
Q Consensus 185 ~a~~~pd~~Al~~~-----------~~~----~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vv 248 (693)
.++++||++|+.+. ++. ...+.+..+||+||.++++++|++|.++ +++||+|+|+++|+++|++
T Consensus 67 ~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~~~n~~e~~~ 146 (696)
T PLN02387 67 SCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLI 146 (696)
T ss_pred HHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHH
Confidence 34789999999542 110 0124566799999999999999999999 9999999999999999999
Q ss_pred HHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCCCC---
Q 005501 249 IYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGI--- 323 (693)
Q Consensus 249 a~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--- 323 (693)
++|||+++|+++||+++.++.+++.++|++++++++|++.... ..+..+....+. .++.++........
T Consensus 147 ~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~------~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~ 220 (696)
T PLN02387 147 ALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQL------KKLIDISSQLETVKRVIYMDDEGVDSDSSLS 220 (696)
T ss_pred HHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHH------HHHHHHhhccCCceEEEEECCCCchhhhhhh
Confidence 9999999999999999999999999999999999999986432 222222222222 23333321110000
Q ss_pred -CCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchh-cCCCCCCEEE
Q 005501 324 -PLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-IDLKVGDVYC 401 (693)
Q Consensus 324 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~d~~l 401 (693)
.......+|+++....... ........++|+++|+|||||||.||||++||++++..+...... .+++++|+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~d~~l 296 (696)
T PLN02387 221 GSSNWTVSSFSEVEKLGKEN----PVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYL 296 (696)
T ss_pred ccCCcEEEEHHHHHHhhccC----CCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCCCCEEE
Confidence 0011124566665543220 111223457999999999999999999999999998877765544 3578999999
Q ss_pred EeCCccccchhHHHHHHHHcCCEEEEecCCC-------ChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCC--------
Q 005501 402 WPTNLGWVMGPVILFSSFLNGATLALYQGSP-------LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE-------- 466 (693)
Q Consensus 402 ~~~~~~~~~~~~~~~~~L~~G~~lvi~~~~~-------~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~-------- 466 (693)
+++|++|.++....+..+..|+++....... .+..++..++++++|++.++|++++.+.+.....
T Consensus 297 ~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~ 376 (696)
T PLN02387 297 AYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLA 376 (696)
T ss_pred EECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHH
Confidence 9999999999866556677888776543211 1234567899999999999999999886431000
Q ss_pred -----------------------C--C-------------CC-ccccEEEeecCCCCcchHHHHHhhCCCCceecccccc
Q 005501 467 -----------------------G--L-------------DW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507 (693)
Q Consensus 467 -----------------------~--~-------------~l-~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 507 (693)
. . .+ +++|.+++||+++++++.+++...+ +++++++||+|
T Consensus 377 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~-g~~v~~~YG~T 455 (696)
T PLN02387 377 KKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICL-GAPIGQGYGLT 455 (696)
T ss_pred HHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHc-CCCeeEeechh
Confidence 0 0 01 5899999999999999987776555 68999999999
Q ss_pred cccceeccCCcCCCCccCccCCCCCCceEEEEC-CCCCCC---CCCCCceeeEEE-----ecccCCCccccccccccccc
Q 005501 508 ELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPY---PDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVY 578 (693)
Q Consensus 508 E~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild-~~~~~~---p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~ 578 (693)
|+++..+.... .....+++|+|+|+++++|+| +++... .++. .|||++ +.||++ +++.|++.
T Consensus 456 Et~~~~~~~~~-~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p--~GEi~vrGp~v~~GY~~------~pe~T~~~ 526 (696)
T PLN02387 456 ETCAGATFSEW-DDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMP--RGEIVIGGPSVTLGYFK------NQEKTDEV 526 (696)
T ss_pred hcccceeecCc-ccCCCCccCCCCCceEEEEeeccccCcccCCCCCC--CceEEeccCcccchhcC------CHHHHhhh
Confidence 99865544433 234567899999999999998 544322 1222 388887 567777 66688888
Q ss_pred ccccccCCCceeeeecceEEEecCCcEEEEeecCCcccc-CCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEE
Q 005501 579 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (693)
Q Consensus 579 f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~-~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 657 (693)
|..++ +|.+||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|. +||.|.+++|++.+. . ..++
T Consensus 527 f~~d~--~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~-~~p~V~~~~V~g~~~---~-~~~~ 599 (696)
T PLN02387 527 YKVDE--RGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALS-VSPYVDNIMVHADPF---H-SYCV 599 (696)
T ss_pred hcccc--CCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHh-cCCCeeEEEEEecCC---c-ceEE
Confidence 85432 35579999999999999999999999999997 599999999999995 999999999998542 2 6799
Q ss_pred EEEEecC
Q 005501 658 IFVVLKK 664 (693)
Q Consensus 658 a~vv~~~ 664 (693)
|+|++++
T Consensus 600 a~vv~~~ 606 (696)
T PLN02387 600 ALVVPSQ 606 (696)
T ss_pred EEEEeCH
Confidence 9999864
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-58 Score=511.07 Aligned_cols=473 Identities=23% Similarity=0.279 Sum_probs=380.7
Q ss_pred cchhhhhccCcccCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHH
Q 005501 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251 (693)
Q Consensus 173 ~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~L 251 (693)
+|.+++++.... ++.+||++|+++.+. .+||.||.++++++|++|.+. +++|++|+++++|+++++++++
T Consensus 3 ~~~~~~~~~~~~-~~~~p~~~a~~~~~~--------~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~ 73 (508)
T TIGR02262 3 YNAAEDLLDRNV-VEGRGGKTAFIDDIS--------SLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFL 73 (508)
T ss_pred chHHHHHHHHHH-hcccCCceEEEeCCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 466777777542 467999999998766 999999999999999999999 9999999999999999999999
Q ss_pred HHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCCCCCCCCCc
Q 005501 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQD 329 (693)
Q Consensus 252 A~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 329 (693)
||+++|++++|+++.++.+++.++++.++++++++++... +.+.......+. ..+..... ....
T Consensus 74 a~~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 139 (508)
T TIGR02262 74 GAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELL------PVIKAALGKSPHLEHRVVVGRP--------EAGE 139 (508)
T ss_pred HHHHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhH------HHHHHHHhcCCCccEEEEeCCC--------Cccc
Confidence 9999999999999999999999999999999999987532 111222222221 12222110 0112
Q ss_pred ccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHH-hchhcCCCCCCEEEEeCCccc
Q 005501 330 LSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE-GWAHIDLKVGDVYCWPTNLGW 408 (693)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~~l~~~~~~~ 408 (693)
..+.++...... ...+....++++++|+|||||||.||||+++|+++...+.. ....++++++|+++...|++|
T Consensus 140 ~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~ 214 (508)
T TIGR02262 140 VQLAELLATESE-----QFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAKLFF 214 (508)
T ss_pred ccHHHHhhcCCC-----ccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCchHH
Confidence 334444332211 11223345789999999999999999999999999876654 345678899999999999999
Q ss_pred cchh-HHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcch
Q 005501 409 VMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 487 (693)
Q Consensus 409 ~~~~-~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~ 487 (693)
++++ ..++.++..|+++++.++..++..+++.|+++++|.+.++|+++..++...........++|.+++||+++++++
T Consensus 215 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~ 294 (508)
T TIGR02262 215 AYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEV 294 (508)
T ss_pred HHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHH
Confidence 9988 557788999999999887678889999999999999999999999887654333344678999999999999999
Q ss_pred HHHHHhhCCCCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----eccc
Q 005501 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLY 562 (693)
Q Consensus 488 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy 562 (693)
.+.|.+.+ ++++++.||+||++.+...... .....+++|+|++|+.++|+|++++++|.|+. |||++ ..||
T Consensus 295 ~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~-~~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~~--Gel~i~~~~~~~gY 370 (508)
T TIGR02262 295 GQRWQARF-GVDIVDGIGSTEMLHIFLSNLP-GDVRYGTSGKPVPGYRLRLVGDGGQDVAAGEP--GELLISGPSSATMY 370 (508)
T ss_pred HHHHHHHh-CCchhhCccccccCceeecCCc-cCCCCCCcCCCCCCcEEEEECCCCCCCCCCCe--eEEEEecCcccccc
Confidence 88888776 5789999999999875544322 22345689999999999999999999999984 99998 3456
Q ss_pred CCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeE
Q 005501 563 LGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETA 642 (693)
Q Consensus 563 ~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~ 642 (693)
++ +++.++..|. .+||+|||++++++||.+++.||.||+||++|.+|+|.|||++|. .+|+|.+++
T Consensus 371 ~~------~~~~~~~~~~-------~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~-~~~~v~~~~ 436 (508)
T TIGR02262 371 WN------NRAKTRDTFQ-------GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALI-QHPAVLEAA 436 (508)
T ss_pred CC------CHHHhHhhhh-------cCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHH-hCCCeeEEE
Confidence 55 4445555553 239999999999999999999999999999999999999999995 999999999
Q ss_pred EEeecCCCCCceEEEEEEEecCCCC---CChHHHHHHHHHHHHhhcCCCceec
Q 005501 643 AISVSPAGGGPEVLVIFVVLKKGFT---SQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 643 Vv~~~~~~~g~~~l~a~vv~~~~~~---~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
+++.++...+ +++++|+++.++.. ...++++++++++|+.++.|..++.
T Consensus 437 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~ 488 (508)
T TIGR02262 437 VVGVEDEDGL-IKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIVF 488 (508)
T ss_pred EEeccccCCC-ceeEEEEEeCCCCccccccHHHHHHHHHHhcccCCCCceEEE
Confidence 9998877666 88999999876542 2357899999999999999987754
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-59 Score=568.65 Aligned_cols=476 Identities=17% Similarity=0.196 Sum_probs=376.9
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
+++++|+++|+++..+ +++||+||.++++++|++|++.+++||+|+++++|++++++++|||+++|++++|++
T Consensus 624 ~a~~~p~~~a~~~~~~-------~~~Ty~el~~~~~~~a~~L~~~~~~g~~V~i~~~n~~~~~~~~la~~~~G~v~v~l~ 696 (1146)
T PRK08633 624 TAKRNWSRLAVADSTG-------GELSYGKALTGALALARLLKRELKDEENVGILLPPSVAGALANLALLLAGKVPVNLN 696 (1146)
T ss_pred HHHhcCCCcEEEcCCC-------CcCcHHHHHHHHHHHHHHHHHhCCCCCeEEEECCCchHHHHHHHHHHHcCCEEEEeC
Confidence 3578999999986532 289999999999999999975599999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (693)
|.++.+++.+++++++++++++++............... .....++........ . .....+.+....... +.
T Consensus 697 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~-~~ 768 (1146)
T PRK08633 697 YTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLEL--PENVKVIYLEDLKAK----I-SKVDKLTALLAARLL-PA 768 (1146)
T ss_pred CCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhc--ccCceEEEeehhccc----c-chhHHHHHHHHhccC-CH
Confidence 999999999999999999999987533111100000000 001122222211100 0 001112222111100 00
Q ss_pred C--CCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhH-HHHHHHHc
Q 005501 345 P--NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLN 421 (693)
Q Consensus 345 ~--~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~L~~ 421 (693)
. .........++|+++|+|||||||+||||+++|+++.+.+......++++++|++++.+|+.|..++. .++.+++.
T Consensus 769 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~ 848 (1146)
T PRK08633 769 RLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLE 848 (1146)
T ss_pred HHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHC
Confidence 0 00001234679999999999999999999999999999888887888899999999999999999984 48899999
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCcee
Q 005501 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (693)
Q Consensus 422 G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 501 (693)
|+++++.+...++..+++.++++++|++.++|++++.+.+.....+.+++++|.+++|||++++++.+++.+.+ +++++
T Consensus 849 g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~ 927 (1146)
T PRK08633 849 GIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKF-GIRIL 927 (1146)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHh-CCCee
Confidence 99999987667888999999999999999999999999886555556788999999999999999999988776 58999
Q ss_pred cccccccccceeccCCcCC---------CCccCccCCCCCCceEEEECC-CCCCCCCCCCceeeEEE-----ecccCCCc
Q 005501 502 ESCGGTELSSAYIQGSLLQ---------PQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGL-----FPLYLGAS 566 (693)
Q Consensus 502 n~YG~TE~~~~~~~~~~~~---------~~~~~~iG~p~~~~~~~ild~-~~~~~p~G~~giGel~v-----~~gy~~~~ 566 (693)
|.||+||++...+...+.. ....+++|+|+||++++|+|+ +++++|.|+. |||++ ..||++
T Consensus 928 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~--Gel~v~g~~~~~gY~~-- 1003 (1146)
T PRK08633 928 EGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGED--GLILIGGPQVMKGYLG-- 1003 (1146)
T ss_pred cccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCc--eEEEEcCCCccccccC--
Confidence 9999999986554332211 124578999999999999994 6899999995 99998 467777
Q ss_pred ccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCc--ccceeEEE
Q 005501 567 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADE--SILETAAI 644 (693)
Q Consensus 567 ~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p--~V~~a~Vv 644 (693)
+++.|++.|... +|.+||+|||+|++|+||++++.||.||+||++|++|+|.|||++|. +|| .+.+++|+
T Consensus 1004 ----~~~~t~~~~~~~---~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~-~~~~~~~~~~~v~ 1075 (1146)
T PRK08633 1004 ----DPEKTAEVIKDI---DGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELA-KALGGEEVVFAVT 1075 (1146)
T ss_pred ----CccchHHHhhcC---CCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHH-hccCCCCceEEEE
Confidence 455777777543 35679999999999999999999999999999999999999999995 998 56789999
Q ss_pred eecCCCCCceEEEEEEEecCCCCCChHHHHHHHHH-HHHhhcCCCceec
Q 005501 645 SVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSK-AIQSKLNPLFKVW 692 (693)
Q Consensus 645 ~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~-~L~~~m~P~~~v~ 692 (693)
+++++..| +.++++++.. ..+.+++++++++ +||+|+.|..++.
T Consensus 1076 ~~~~~~~g-~~~~~~v~~~---~~~~~~l~~~~~~~~l~~~~~P~~i~~ 1120 (1146)
T PRK08633 1076 AVPDEKKG-EKLVVLHTCG---AEDVEELKRAIKESGLPNLWKPSRYFK 1120 (1146)
T ss_pred eccCCCCC-cEEEEEEecC---ccCHHHHHHHHHhcCCCcccCCcEEEE
Confidence 99998888 8999999873 3466889999975 6999999988764
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-58 Score=513.08 Aligned_cols=460 Identities=17% Similarity=0.192 Sum_probs=373.7
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++++|+++|+++.+. .+||+||.++++++|+.|.+. +++|++|+++++|++++++++|||+++|++++|++
T Consensus 22 ~~~~~~~~a~~~~~~--------~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~ 93 (524)
T PRK06188 22 LKRYPDRPALVLGDT--------RLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLAGLRRTALH 93 (524)
T ss_pred HHHCCCCeEEEECCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEecc
Confidence 368999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCCCCCCCCCcccHHHHhcccCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (693)
|..+.+++..++++++++.+++++... ...........+. ..+.+.... ...++.......
T Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 156 (524)
T PRK06188 94 PLGSLDDHAYVLEDAGISTLIVDPAPF-----VERALALLARVPSLKHVLTLGPVP------------DGVDLLAAAAKF 156 (524)
T ss_pred cCCCHHHHHHHHHhcCceEEEEecchh-----hHHHHHHhhhcCCceEEEEeCCcc------------chhhHHHhhhcc
Confidence 999999999999999999999987421 0111111111111 122211110 011111110000
Q ss_pred CCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHcC
Q 005501 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNG 422 (693)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G 422 (693)
...... ....++++++|+|||||||.||+|+++|+++.+.+......+++..++++++..|++|.+++. ++.+++.|
T Consensus 157 -~~~~~~-~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~~~~~~~~~l~~~pl~~~~g~~-~~~~l~~G 233 (524)
T PRK06188 157 -GPAPLV-AAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPRFLMCTPLSHAGGAF-FLPTLLRG 233 (524)
T ss_pred -Cccccc-ccCCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhcCCCcCcEEEEecCchhhhhHH-HHHHHHcC
Confidence 001111 122346699999999999999999999999999888888889999999999999999988764 57889999
Q ss_pred CEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceec
Q 005501 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (693)
Q Consensus 423 ~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (693)
+++++.+ ..++..+++.++++++|++.++|+++..|++.......+++++|.+++||++++++....+.+.+ +..+++
T Consensus 234 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~ 311 (524)
T PRK06188 234 GTVIVLA-KFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERF-GPIFAQ 311 (524)
T ss_pred CEEEEcC-CCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHh-Cchhhh
Confidence 9999987 46788999999999999999999999999987655566789999999999999999877776665 467999
Q ss_pred ccccccccceeccCCcC-----CCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCccccccc
Q 005501 503 SCGGTELSSAYIQGSLL-----QPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNA 572 (693)
Q Consensus 503 ~YG~TE~~~~~~~~~~~-----~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~ 572 (693)
.||+||++.++...... ......++|+|++|+.++|+|+++++++.|+. |||++ ..||++ ++
T Consensus 312 ~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~--Gel~v~~~~~~~gy~~------~~ 383 (524)
T PRK06188 312 YYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEV--GEICVRGPLVMDGYWN------RP 383 (524)
T ss_pred eeCccccCCceeecCchhccccccccCCccccccCCcEEEEEcCCCCCCCCCCe--eEEEEECcchhhhhcC------Ch
Confidence 99999997654443221 22345689999999999999999999999985 99999 356665 33
Q ss_pred ccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCC
Q 005501 573 DHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGG 652 (693)
Q Consensus 573 ~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g 652 (693)
..+...|. ..||+|||++++++||++++.||.|++||++|.+|+|.|||++|. .||+|.+++|++.+++..+
T Consensus 384 ~~~~~~~~-------~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~-~~~~v~~~~v~~~~~~~~~ 455 (524)
T PRK06188 384 EETAEAFR-------DGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLA-EHPAVAQVAVIGVPDEKWG 455 (524)
T ss_pred HHhhhhhc-------CCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHH-hCCCeeEEEEEeccCCCcC
Confidence 34544442 239999999999999999999999999999999999999999995 9999999999999887777
Q ss_pred ceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
+.++++++++++...+.++++++++++++.++.|..++.
T Consensus 456 -~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~ 494 (524)
T PRK06188 456 -EAVTAVVVLRPGAAVDAAELQAHVKERKGSVHAPKQVDF 494 (524)
T ss_pred -ceEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEE
Confidence 899999999876666778999999999999999988764
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=516.27 Aligned_cols=469 Identities=22% Similarity=0.274 Sum_probs=365.0
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++++|+++|+++.+. .+||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 34 a~~~p~~~a~~~~~~--------~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpi~ 105 (563)
T PRK06710 34 ASRYPEKKALHFLGK--------DITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTN 105 (563)
T ss_pred HHHCCCceEEEecCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCeEEeccC
Confidence 368999999998776 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCC------------------CCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVG------------------IPLR 326 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~ 326 (693)
|.++.+++..+++.++++++++++....... .+........+++........ ....
T Consensus 106 p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (563)
T PRK06710 106 PLYTERELEYQLHDSGAKVILCLDLVFPRVT------NVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVS 179 (563)
T ss_pred cccCHHHHHHHHhccCCeEEEEeccchhhhh------ccchhhccceeEEeccccccccccccccchhhccccccccccc
Confidence 9999999999999999999999875321111 111110001111100000000 0000
Q ss_pred --CCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhch-hcCCCC-CCEEEE
Q 005501 327 --EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKV-GDVYCW 402 (693)
Q Consensus 327 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~-~~~~~~-~d~~l~ 402 (693)
.....|..+..... .........++++++++|||||||.||||+++|+++......... .++... ++++++
T Consensus 180 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~ 254 (563)
T PRK06710 180 ESETIHLWNSVEKEVN-----TGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLG 254 (563)
T ss_pred ccchhhhhhhhhhccc-----cccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEE
Confidence 00001222111100 001111223578999999999999999999999998754433222 234444 457888
Q ss_pred eCCccccchh-HHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecC
Q 005501 403 PTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481 (693)
Q Consensus 403 ~~~~~~~~~~-~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe 481 (693)
..|+.|.++. ..++.+++.|+++++.+ ..++..+++.|+++++|++.++|+++..++........+++++|.+++||+
T Consensus 255 ~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~ 333 (563)
T PRK06710 255 VLPFFHVYGMTAVMNLSIMQGYKMVLIP-KFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSA 333 (563)
T ss_pred eCchHHHHHHHHHHHHHHHcCCeEEEcC-CCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCC
Confidence 9999998887 44667889999999876 467889999999999999999999999998765444556789999999999
Q ss_pred CCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEEC-CCCCCCCCCCCceeeEEE--
Q 005501 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-- 558 (693)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild-~~~~~~p~G~~giGel~v-- 558 (693)
++++++.+++.+.+ +.+++|.||+||++..............+++|+|.+++.++|+| ++++++|.|+. |||++
T Consensus 334 ~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~--Gel~v~g 410 (563)
T PRK06710 334 PLPVEVQEKFETVT-GGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEI--GEIVVKG 410 (563)
T ss_pred cCCHHHHHHHHHhh-CCCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCccCCCCCc--eEEEEec
Confidence 99999988887765 67899999999998754333222333456899999999999998 67899999985 99998
Q ss_pred ---ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccC
Q 005501 559 ---FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD 635 (693)
Q Consensus 559 ---~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~ 635 (693)
..||++ +++.+...|. +.||+|||++++++||+++++||.||+||++|.+|+|.|||++|. +|
T Consensus 411 ~~~~~gY~~------~~~~~~~~~~-------~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~-~~ 476 (563)
T PRK06710 411 PQIMKGYWN------KPEETAAVLQ-------DGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLY-EH 476 (563)
T ss_pred CccchhhhC------ChHHHhhhcc-------cCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHH-hC
Confidence 345555 4446665553 239999999999999999999999999999999999999999995 99
Q ss_pred cccceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 636 ESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 636 p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
|+|.+++|++++++..| +.++++|+..++...+.++++++++++|+.++.|..+..
T Consensus 477 ~~v~~~~v~~~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~ 532 (563)
T PRK06710 477 EKVQEVVTIGVPDPYRG-ETVKAFVVLKEGTECSEEELNQFARKYLAAYKVPKVYEF 532 (563)
T ss_pred cceeeEEEEccccCCcC-ceeEEEEEECCCCCCCHHHHHHHHHHhcccccCCcEEEE
Confidence 99999999999988777 899999999887667788999999999999999987754
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-57 Score=508.56 Aligned_cols=452 Identities=18% Similarity=0.200 Sum_probs=372.0
Q ss_pred CCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 005501 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (693)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p 265 (693)
+.+|+++|+++.+. .+||+||.++++++|.+|.+. +++|++|+++++|+.++++++|||+++|++++|+++
T Consensus 13 ~~~p~~~~~~~~~~--------~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~ 84 (503)
T PRK04813 13 QTQPDFPAYDYLGE--------KLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDV 84 (503)
T ss_pred HhCCCceEEEeCCc--------EEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEecCCC
Confidence 67899999998776 999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCC
Q 005501 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345 (693)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (693)
.++.+++..+++.++++++++++...... ... ....++++...... ..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~----------------~~~~~~~~~~~~~~--~~ 132 (503)
T PRK04813 85 SSPAERIEMIIEVAKPSLIIATEELPLEI--------------LGI----------------PVITLDELKDIFAT--GN 132 (503)
T ss_pred CChHHHHHHHHHhcCCCEEEecccccccc--------------cCC----------------cEEehHHhhhhhhc--cc
Confidence 99999999999999999999987531000 000 01112222111000 00
Q ss_pred CCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHcCCEE
Q 005501 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATL 425 (693)
Q Consensus 346 ~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~l 425 (693)
.........++++++++|||||||.||||.++|+++...+.+....+++..+++++...|++|+.+++.++.+|..|+++
T Consensus 133 ~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~ 212 (503)
T PRK04813 133 PYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDFALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTL 212 (503)
T ss_pred cccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHcCCCcCceeeecCCcchhHhHHHHHHHHhcCCEE
Confidence 00112234678899999999999999999999999998888887888899999999999999999998888999999999
Q ss_pred EEecCC--CChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceecc
Q 005501 426 ALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (693)
Q Consensus 426 vi~~~~--~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (693)
++.+.. .++..+++.++++++|++..+|+++..+.........+++++|.++++|+++++.+.+++.+.++++.+++.
T Consensus 213 v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~ 292 (503)
T PRK04813 213 VALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNT 292 (503)
T ss_pred EEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeC
Confidence 998753 367889999999999999999999988765544445567899999999999999999999998888899999
Q ss_pred cccccccceeccCCc----CCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCccccccccc
Q 005501 504 CGGTELSSAYIQGSL----LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADH 574 (693)
Q Consensus 504 YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~ 574 (693)
||+||++..++.... .......++|+|.++++++|+|+++.+++.|+. ||+++ ..||++ +++.
T Consensus 293 yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~------~~~~ 364 (503)
T PRK04813 293 YGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQ--GEIVISGPSVSKGYLN------NPEK 364 (503)
T ss_pred cccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCCc--eEEEEeccccccccCC------ChhH
Confidence 999999764433221 112334579999999999999999999999984 99998 457776 4446
Q ss_pred ccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCce
Q 005501 575 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPE 654 (693)
Q Consensus 575 t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~ 654 (693)
+.+.|..+ .|.+||+|||+|++ +||++++.||.||+||++|++|+|.|||++|. .+|+|.+++|++.++...+ +
T Consensus 365 ~~~~~~~~---~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~ 438 (503)
T PRK04813 365 TAEAFFTF---DGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLR-QSSYVESAVVVPYNKDHKV-Q 438 (503)
T ss_pred hHHhhccC---CCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHH-hCCCcceEEEEEeeCCCCc-c
Confidence 66555432 35679999999999 99999999999999999999999999999995 9999999999998776555 8
Q ss_pred EEEEEEEecCCCC-CC---hHHHHHHHHHHHHhhcCCCceec
Q 005501 655 VLVIFVVLKKGFT-SQ---PDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 655 ~l~a~vv~~~~~~-~~---~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
.++++++++++.. .. ..+++++++++|+.++.|..++.
T Consensus 439 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~ 480 (503)
T PRK04813 439 YLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIPRKFIY 480 (503)
T ss_pred EEEEEEEeccccccccchhHHHHHHHHHhhCccccCCeEEEE
Confidence 9999999876421 11 14589999999999999988764
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-57 Score=511.00 Aligned_cols=485 Identities=20% Similarity=0.215 Sum_probs=372.0
Q ss_pred cCCCCccchhhhhccCcccCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHH
Q 005501 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVR 245 (693)
Q Consensus 167 ~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~ 245 (693)
|++....+..+.+ .. +++.+|+++|+.+.+. .+||.||+++++++|++|.+. +++|++|+++++|+++
T Consensus 27 ~~~~~~~~l~~~l-~~--~a~~~p~~~al~~~~~--------~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~ 95 (567)
T PRK06178 27 EYPHGERPLTEYL-RA--WARERPQRPAIIFYGH--------VITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQ 95 (567)
T ss_pred CCCcCcccHHHHH-HH--HHHHCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcH
Confidence 4444444443332 22 2367899999998776 999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEE-EcCCCC---CC
Q 005501 246 AVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIV-LPAIGN---DV 321 (693)
Q Consensus 246 ~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~ 321 (693)
+++++|||+++|++++|++|.++.+++.+++++++++++++++... +.+.++........+. ....+. ..
T Consensus 96 ~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~------~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 169 (567)
T PRK06178 96 FHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLA------PVVEQVRAETSLRHVIVTSLADVLPAEP 169 (567)
T ss_pred HHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchH------HHHHHhhccCCcceEEEecccccccccc
Confidence 9999999999999999999999999999999999999999987532 1122222111112222 111100 00
Q ss_pred CCCCCC-------CcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhch-hcC
Q 005501 322 GIPLRE-------QDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HID 393 (693)
Q Consensus 322 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~-~~~ 393 (693)
...... ....+.++...... ...........++++|+|+|||||||.||||+++|+++......... ...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~ 247 (567)
T PRK06178 170 TLPLPDSLRAPRLAAAGAIDLLPALRA--CTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVV 247 (567)
T ss_pred ccccccccccccccccccccHHHHhhc--cccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhcc
Confidence 000000 00112222221111 01111223346799999999999999999999999998766544332 356
Q ss_pred CCCCCEEEEeCCccccchh-HHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCcc
Q 005501 394 LKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472 (693)
Q Consensus 394 ~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~ 472 (693)
+..+|+++.++|++|.++. ..++.++.+|+++++.+ ..++..++..++++++|.+.++|..+..+.........++++
T Consensus 248 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~-~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~ 326 (567)
T PRK06178 248 GGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLA-RWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSS 326 (567)
T ss_pred CCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeC-CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcch
Confidence 7889999999999999887 56888999999999987 568899999999999999999999999988765444556778
Q ss_pred ccEEEe--ecCCCCcchHHHHHhhCCCCceecccccccccceeccCCc--CC----CCccCccCCCCCCceEEEEC-CCC
Q 005501 473 IRSFAS--TGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL--LQ----PQAFGAFSTATMTAGLVILD-ECG 543 (693)
Q Consensus 473 lr~v~~--gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~--~~----~~~~~~iG~p~~~~~~~ild-~~~ 543 (693)
++.+.. +|+.++++..+.+.+.++...+.+.||+||++...+.... .. ....+++|+|++|++++|+| +++
T Consensus 327 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~ 406 (567)
T PRK06178 327 LRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETG 406 (567)
T ss_pred heeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCC
Confidence 887654 4589999998888877654444568999998764333221 11 12346799999999999999 679
Q ss_pred CCCCCCCCceeeEEE-----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccC
Q 005501 544 VPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 618 (693)
Q Consensus 544 ~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~ 618 (693)
++++.|+. |||++ ..||++ +++.++..|. +| ||+|||+|++++||+++|+||+||+||++
T Consensus 407 ~~~~~g~~--Gel~v~g~~v~~gY~~------~~~~~~~~~~-----dg--~~~TGDl~~~~~~g~l~i~GR~~d~i~~~ 471 (567)
T PRK06178 407 ELLPLGAE--GEIVVRTPSLLKGYWN------KPEATAEALR-----DG--WLHTGDIGKIDEQGFLHYLGRRKEMLKVN 471 (567)
T ss_pred CcCCCCCc--eEEEEECCcccccccC------Chhhhhhccc-----CC--ceeecceEEEecCCeEEEEecccccEEEC
Confidence 99999984 99998 356666 4445655553 23 99999999999999999999999999999
Q ss_pred CeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCC
Q 005501 619 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 688 (693)
Q Consensus 619 G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~ 688 (693)
|++|+|.|||++|. .+|+|.+++|++.+++..+ +.++++|+++++...+.++++++++++|+.|++|.
T Consensus 472 G~~i~~~eiE~~l~-~~~~v~~~~v~~~~~~~~g-~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~ 539 (567)
T PRK06178 472 GMSVFPSEVEALLG-QHPAVLGSAVVGRPDPDKG-QVPVAFVQLKPGADLTAAALQAWCRENMAVYKVPE 539 (567)
T ss_pred CEEECHHHHHHHHH-hCCCeeEEEEEcCcCcccC-cceEEEEEeCCCCcCCHHHHHHHHHhcCcccCCce
Confidence 99999999999995 9999999999999887777 88999999987766788999999999999999996
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-57 Score=497.17 Aligned_cols=398 Identities=14% Similarity=0.090 Sum_probs=324.9
Q ss_pred eecHHHHHHHHHHHHHHHHhh-c-CCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEe
Q 005501 209 LMTYKELREQVMLVANALDTM-F-SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 286 (693)
Q Consensus 209 ~lTY~eL~~~a~~lA~~L~~~-v-~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~ 286 (693)
-+.|+||.++++++|++|++. + ++|++|+++++|+++++++++||+++|++++|+||.++.+++.+++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 478999999999999999999 6 67999999999999999999999999999999999999999999999999999998
Q ss_pred ecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccC
Q 005501 287 QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366 (693)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSG 366 (693)
++..... . . .. ... ......++++++++||||
T Consensus 99 ~~~~~~~---------~----------~-------------~~---------~~~-------~~~~~~~~~~~~i~~TSG 130 (452)
T PRK07445 99 LDQLKLS---------H----------P-------------PP---------LPS-------QGILPNLETGWIMIPTGG 130 (452)
T ss_pred cCccccc---------c----------C-------------CC---------CCc-------cccCCCCCCcEEEEeCCC
Confidence 7642100 0 0 00 000 001124689999999999
Q ss_pred CCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCC
Q 005501 367 TTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGV 446 (693)
Q Consensus 367 STG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~v 446 (693)
|||.||||+++|+++.+.+.+....+++.+ +++++.+|++|.+++..++.+|+.|+++++.+.. ..........++++
T Consensus 131 TTG~PKgV~~t~~~l~~~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~-~~~~~~~~~~~~~~ 208 (452)
T PRK07445 131 SSGQIRFAIHTWETLTASVQGFQRYFQLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYK-RLKSGQELPPNPSD 208 (452)
T ss_pred CCCCCcEEEechHHHHHHHHHHHHHhcCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChH-hccchhhhhhhcCc
Confidence 999999999999999888777766677655 4678889999999998888999999999998632 12222334457899
Q ss_pred cEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceecccccccccceeccCCcCC-CCccC
Q 005501 447 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ-PQAFG 525 (693)
Q Consensus 447 t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~-~~~~~ 525 (693)
|++.++|++++.+++.. ...+++||.+++||+++++++.+.+... +++++|.||+||++..++...+.. .....
T Consensus 209 t~~~~vP~~l~~l~~~~---~~~l~~l~~i~~gG~~l~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~ 283 (452)
T PRK07445 209 FFLSLVPTQLQRLLQLR---PQWLAQFRTILLGGAPAWPSLLEQARQL--QLRLAPTYGMTETASQIATLKPDDFLAGNN 283 (452)
T ss_pred eEEEehHHHHHHHHhhC---hhhhhcceEEEECCccCCHHHHHHHHhc--CCeEecCcchhhhcccccccCchhhccCCC
Confidence 99999999999998632 2347899999999999999988777542 678999999999986444332221 12346
Q ss_pred ccCCCCCCceEEEECCCCCCCCCCCCceeeEEEe-----cccCCCcccccccccccccccccccCCCceeeeecceEEEe
Q 005501 526 AFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600 (693)
Q Consensus 526 ~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v~-----~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~ 600 (693)
++|+|+++++++|+ .|+ .|||++. .||++. + ....+||+|||+|++|
T Consensus 284 ~~G~~~p~~~v~i~--------~g~--~Gel~v~g~~~~~gY~~~-----------------~-~~~~g~~~TGDl~~~d 335 (452)
T PRK07445 284 SSGQVLPHAQITIP--------ANQ--TGNITIQAQSLALGYYPQ-----------------I-LDSQGIFETDDLGYLD 335 (452)
T ss_pred cCCccCCCCeEEEc--------CCC--cceEEEeCCccchhhcCC-----------------c-cCCCCEEECCCEEEEc
Confidence 79999999999998 344 4999982 344331 1 1123499999999999
Q ss_pred cCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHH
Q 005501 601 VGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA 680 (693)
Q Consensus 601 ~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~ 680 (693)
+||+++|.||.||+||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.++|+++.+++ ..+.++++++++++
T Consensus 336 ~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~-~~p~V~~a~V~g~~~~~~g-~~~~a~vv~~~~-~~~~~~l~~~~~~~ 412 (452)
T PRK07445 336 AQGYLHILGRNSQKIITGGENVYPAEVEAAIL-ATGLVQDVCVLGLPDPHWG-EVVTAIYVPKDP-SISLEELKTAIKDQ 412 (452)
T ss_pred CCCCEEEEeecCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEeccCcCCC-cEEEEEEEeCCC-CCCHHHHHHHHHHh
Confidence 99999999999999999999999999999995 9999999999999998877 899999998765 45678999999999
Q ss_pred HHhhcCCCceec
Q 005501 681 IQSKLNPLFKVW 692 (693)
Q Consensus 681 L~~~m~P~~~v~ 692 (693)
|+.|++|..++.
T Consensus 413 L~~~~~P~~i~~ 424 (452)
T PRK07445 413 LSPFKQPKHWIP 424 (452)
T ss_pred CCcccCCeEEEE
Confidence 999999998775
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=507.04 Aligned_cols=470 Identities=20% Similarity=0.230 Sum_probs=365.5
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
++++|+++|+++.+. ++||+||.++++++|.+|++ . +++|++|+++++|++++++++|||+++|++++|+
T Consensus 33 a~~~p~~~a~~~~~~--------~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 104 (560)
T PRK08974 33 VARYADQPAFINMGE--------VMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGMIVVNV 104 (560)
T ss_pred HHhCCCCceEEECCc--------cccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEecc
Confidence 368999999998665 99999999999999999985 7 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCC-------------------C
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGI-------------------P 324 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~ 324 (693)
+|.++.+++.+++++++++++++++... ..+..+........+........... .
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (560)
T PRK08974 105 NPLYTPRELEHQLNDSGAKAIVIVSNFA------HTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPKY 178 (560)
T ss_pred CccCCHHHHHHHHHhcCceEEEEecccc------HHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccccc
Confidence 9999999999999999999999986432 11222221111111111100000000 0
Q ss_pred CCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhc---CCCCCCEEE
Q 005501 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI---DLKVGDVYC 401 (693)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l 401 (693)
..+...++.+....... .........++++++|+|||||||.||||+++|+++...+......+ ....++.++
T Consensus 179 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~ 254 (560)
T PRK08974 179 HLPDAISFRSALHKGRR----MQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVV 254 (560)
T ss_pred cCCCcccHHHHhhccCC----CCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEE
Confidence 00011122222221111 01111224678999999999999999999999999987655433222 233456778
Q ss_pred EeCCccccchh-HHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeec
Q 005501 402 WPTNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTG 480 (693)
Q Consensus 402 ~~~~~~~~~~~-~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gG 480 (693)
..+|+.|.++. ...+.++.+|+++++.....++..+++.++++++|.+..+|++++.|.........+++++|.+++||
T Consensus 255 ~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg 334 (560)
T PRK08974 255 TALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGG 334 (560)
T ss_pred EeCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecC
Confidence 88888888775 55667888999988876555778899999999999999999999999876544455678999999999
Q ss_pred CCCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE--
Q 005501 481 ETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-- 558 (693)
Q Consensus 481 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-- 558 (693)
+++++.+.++|.+.+ ++++++.||+||++..++.+........+++|.|++++.++|+|++++++|.|+. |||++
T Consensus 335 ~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~--Gel~v~g 411 (560)
T PRK08974 335 MAVQQAVAERWVKLT-GQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPPGEP--GELWVKG 411 (560)
T ss_pred ccCCHHHHHHHHHHh-CCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEECCCCCCCCCCCc--eEEEEec
Confidence 999999988887754 6899999999999876555444333446789999999999999999999999994 99998
Q ss_pred ---ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccC
Q 005501 559 ---FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD 635 (693)
Q Consensus 559 ---~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~ 635 (693)
..||++ +++.++..|. + .||+|||+++++++|+++++||.||+||++|++|+|.|||++|. .|
T Consensus 412 ~~~~~gy~~------~~~~~~~~~~-----~--g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~-~~ 477 (560)
T PRK08974 412 PQVMLGYWQ------RPEATDEVIK-----D--GWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVM-LH 477 (560)
T ss_pred CCcchhhcC------Chhhhhhhhh-----c--CCcccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHH-hC
Confidence 345665 4445665552 1 39999999999999999999999999999999999999999995 99
Q ss_pred cccceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 636 ESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 636 p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
|+|.+++|++.++...+ +.++++++..+. ..+.++++++++++|+.|+.|..+..
T Consensus 478 ~~v~~~~v~~~~~~~~g-~~~~~~v~~~~~-~~~~~~l~~~l~~~l~~~~~P~~~~~ 532 (560)
T PRK08974 478 PKVLEVAAVGVPSEVSG-EAVKIFVVKKDP-SLTEEELITHCRRHLTGYKVPKLVEF 532 (560)
T ss_pred CCeeEEEEEeeecCCcc-eEEEEEEECCCC-CCCHHHHHHHHHhhcccccCCcEEEE
Confidence 99999999999988777 788888876543 45668999999999999999987653
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-58 Score=496.67 Aligned_cols=428 Identities=21% Similarity=0.211 Sum_probs=334.1
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
+++.+|+.+|+.+... +.+..+||+|+.+++.++|++|++. +.+||+|+|++.|+++|+++.+||+.+|++.||+
T Consensus 25 ~~~~~~~~~a~~~~~~----~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~g~v~Vp~ 100 (613)
T COG1022 25 RVKDRPDGVALMYKEL----GGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPI 100 (613)
T ss_pred HhhcCCcceeEeeecC----CcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCeEEec
Confidence 3467888889987654 5778999999999999999999999 9779999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC---ceEEEc---CCCCCCCCCC----CCCcccHH
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL---KAIVLP---AIGNDVGIPL----REQDLSWK 333 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~----~~~~~~~~ 333 (693)
.++.+++.++++|+++++++++++.... ......+....+. .....+ .......... ..+...+
T Consensus 101 y~t~~~~~~~~iL~~se~~~i~~e~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 174 (613)
T COG1022 101 YSTSTPEQLAYILNESESKVIFVENQEL-----LDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISLF- 174 (613)
T ss_pred CCCCCHHHHHHHHhcCCceEEEecchHH-----HHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccchhh-
Confidence 9999999999999999999999997421 1112222221111 000000 0000000000 0001111
Q ss_pred HHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcC-CCCCCEEEEeCCccccchh
Q 005501 334 DFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID-LKVGDVYCWPTNLGWVMGP 412 (693)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~-~~~~d~~l~~~~~~~~~~~ 412 (693)
.+ ... .......+..+||+|.|+|||||||.|||||++|+|++..+.......+ ++++|++++++|++|.+..
T Consensus 175 ~~-~~~-----~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er 248 (613)
T COG1022 175 LI-DSA-----GLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFER 248 (613)
T ss_pred hh-ccc-----ccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHH
Confidence 11 110 0111124567899999999999999999999999999999999999997 9999999999999999998
Q ss_pred HH-HHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCc----CC---------------------
Q 005501 413 VI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC----LE--------------------- 466 (693)
Q Consensus 413 ~~-~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~----~~--------------------- 466 (693)
.. ....+..|+++.. ..++..+++.+++.++|++..+|.+|+.+.+... ..
T Consensus 249 ~~~~~~~~~~g~~~~~---~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~ 325 (613)
T COG1022 249 AFEGGLALYGGVTVLF---KEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISR 325 (613)
T ss_pred HHHHHHHhhcceEEEe---cCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 54 4444445544444 3467899999999999999999999987743200 00
Q ss_pred ----------------------CCCC-ccccEEEeecCCCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCc
Q 005501 467 ----------------------GLDW-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA 523 (693)
Q Consensus 467 ----------------------~~~l-~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 523 (693)
...+ .++|++++||.++++++..+++.. ++++.++||+|||+...+...+ ....
T Consensus 326 ~~~~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlTEts~~~~v~~~-~~~~ 402 (613)
T COG1022 326 ALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL--GIPILEGYGLTETSAVVSVNPP-DRFV 402 (613)
T ss_pred hhcccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEecccccccceEEccc-cCcc
Confidence 0001 378999999999999999999877 6999999999999986555444 4466
Q ss_pred cCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccccccccccccccCCCceeeeecceEE
Q 005501 524 FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIK 598 (693)
Q Consensus 524 ~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~ 598 (693)
.+++|+|+|+++++|.|+ |||.| ++||++ +++.|++.|..+. ||+|||+|.
T Consensus 403 ~gtvG~p~p~~evKI~d~------------GEilVRG~~Vm~GYyk------~pe~Taeaf~~DG------Wf~TGDlg~ 458 (613)
T COG1022 403 LGTVGKPLPGIEVKIADD------------GEILVRGPNVMKGYYK------NPEATAEAFTEDG------WFRTGDLGE 458 (613)
T ss_pred cCCcCCcCCCceEEEccC------------ceEEEecchhcchhcC------ChHHHhhhccccC------CcccCceeE
Confidence 788999999999999994 89998 567777 7779999998654 999999999
Q ss_pred EecCCcEEEEeecCCccc-cCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecC
Q 005501 599 RTVGGYIIVQGRADDTMN-LGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 664 (693)
Q Consensus 599 ~~~dG~l~~~GR~dd~ik-~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~ 664 (693)
+|+||+|.++||++|.|| .+|++|.|..||+.+ +.+|-|.+++|++ ++. ..++|.|+++.
T Consensus 459 ~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l-~~~~~I~qi~vvg-~~k----~~~~AlIvp~~ 519 (613)
T COG1022 459 LDEDGYLVITGRKKELIKLSNGKNIAPEPIESKL-AKSPLIEQICVVG-DDK----KFLVALIVPDF 519 (613)
T ss_pred EcCCCcEEEeecccceEECCCCcccChHHHHHHH-hcCCCeeEEEEEe-cCC----cceEEEEeCCH
Confidence 999999999999999999 579999999999999 5999999999998 321 68999999864
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-57 Score=519.39 Aligned_cols=447 Identities=19% Similarity=0.217 Sum_probs=335.9
Q ss_pred CCCCCCcEEEEEec-CCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 186 RRKEDNTVAIVWRE-DRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 186 a~~~pd~~Al~~~~-~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
++++|+++|+.+.. ..+..+.+..+||+||.++++++|++|.+. +++||+|+|+++|+++|++++|||+++|+++||+
T Consensus 52 ~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~lA~~~~G~v~vpl 131 (660)
T PLN02430 52 VEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAMEACAAHSLICVPL 131 (660)
T ss_pred HHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEEe
Confidence 46899999997642 111223455689999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCCC---CCCCCCcccHHHHhcc
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVG---IPLREQDLSWKDFLSS 338 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 338 (693)
++.++++++.+++++++++++|+++... ...+.......+. .++.+........ ........+|+++...
T Consensus 132 ~~~~~~~~l~~il~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (660)
T PLN02430 132 YDTLGPGAVDYIVDHAEIDFVFVQDKKI-----KELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHM 206 (660)
T ss_pred ccCCCHHHHHHHHhccCCCEEEECHHHH-----HHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHh
Confidence 9999999999999999999999986421 0011111111111 2333321110000 0001123467776654
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchh-----cCCCCCCEEEEeCCccccchhH
Q 005501 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-----IDLKVGDVYCWPTNLGWVMGPV 413 (693)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~-----~~~~~~d~~l~~~~~~~~~~~~ 413 (693)
.... + .......++|+++|+|||||||.||||+++|+++...+...... .+++++|++++++|++|.++..
T Consensus 207 ~~~~--~--~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~ 282 (660)
T PLN02430 207 GKEN--P--SETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPLAHILDRM 282 (660)
T ss_pred hccC--C--CCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcHHHHHHHH
Confidence 3321 1 11122357999999999999999999999999998776654221 2567899999999999999876
Q ss_pred HHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCc-----------------------------
Q 005501 414 ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC----------------------------- 464 (693)
Q Consensus 414 ~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~----------------------------- 464 (693)
..+.++..|++++++.. ++..+++.|++.++|++.++|.+++.+.+...
T Consensus 283 ~~~~~l~~G~~i~~~~~--~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (660)
T PLN02430 283 IEEYFFRKGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGY 360 (660)
T ss_pred HHHHHHHcCCEEEEeCC--ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCC
Confidence 55667899999988753 56789999999999999999999987764200
Q ss_pred --CCCC---C----------C-ccccEEEeecCCCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCccCccC
Q 005501 465 --LEGL---D----------W-TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFS 528 (693)
Q Consensus 465 --~~~~---~----------l-~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG 528 (693)
.... + + ++||.+++||+++++++.++++ .+..+.++++||+||+++..+...+......+++|
T Consensus 361 ~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~-~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG 439 (660)
T PLN02430 361 SHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLR-VTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVG 439 (660)
T ss_pred CCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHH-HhcCCCeeeecchhhhhhceEeeccccCCCCCCcc
Confidence 0000 0 1 5799999999999999866654 44456899999999998755544433334468999
Q ss_pred CCCCCceEEEEC--CCC-CCCCCCCCceeeEEE-----ecccCCCcccccccccccccccccccCCCceeeeecceEEEe
Q 005501 529 TATMTAGLVILD--ECG-VPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRT 600 (693)
Q Consensus 529 ~p~~~~~~~ild--~~~-~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~ 600 (693)
+|.+++++++.| +.| .+++.|. .|||+| ..||++ +++.|++.|. + | ||+|||+|++|
T Consensus 440 ~p~~~~evki~d~~~~g~~~~~~~~--~GEi~vrg~~v~~GY~~------~~e~t~~~~~-d----G--w~~TGDig~~d 504 (660)
T PLN02430 440 APAVYNELRLEEVPEMGYDPLGEPP--RGEICVRGKCLFSGYYK------NPELTEEVMK-D----G--WFHTGDIGEIL 504 (660)
T ss_pred CCCCceEEEEEEcCCcCcccCCCCC--cceEEecCCCccccccC------ChHHhhhhhh-c----c--ceeccceEEEC
Confidence 999999999987 333 3455544 499998 457776 5567777772 1 3 99999999999
Q ss_pred cCCcEEEEeecCCcccc-CCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecC
Q 005501 601 VGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 664 (693)
Q Consensus 601 ~dG~l~~~GR~dd~ik~-~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~ 664 (693)
+||+|+|+||+||+||+ +|++|+|.|||++|. +||.|.+|+|++.. .+ +.++|+|++++
T Consensus 505 ~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~-~~p~V~~~~V~G~~---~~-~~~~A~vv~~~ 564 (660)
T PLN02430 505 PNGVLKIIDRKKNLIKLSQGEYVALEYLENVYG-QNPIVEDIWVYGDS---FK-SMLVAVVVPNE 564 (660)
T ss_pred CCCcEEEEEcccccEEcCCCcEEchHHHHHHHh-cCCCeeEEEEEecC---Cc-ceEEEEEEcCH
Confidence 99999999999999996 699999999999995 99999999999832 23 78999999864
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-56 Score=498.03 Aligned_cols=456 Identities=19% Similarity=0.183 Sum_probs=361.9
Q ss_pred EEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHH
Q 005501 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAARE 271 (693)
Q Consensus 193 ~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~ 271 (693)
.|++.+++ .+||.||.++++++|++|.+. +++|++|+++++|++++++++|||+++|++++|++|.++.++
T Consensus 3 ~~~~~~~~--------~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~ 74 (509)
T PRK12406 3 ATIISGDR--------RRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEE 74 (509)
T ss_pred eEEEECCe--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHH
Confidence 46666555 999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCc--eEEEcCCCC--------CCCCCCCCCcccHHHHhcccCC
Q 005501 272 IATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGN--------DVGIPLREQDLSWKDFLSSVDY 341 (693)
Q Consensus 272 l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 341 (693)
+..+++++++++++++..... .+.+..+.. .+....... ............|+++......
T Consensus 75 ~~~~l~~~~~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (509)
T PRK12406 75 IAYILEDSGARVLIAHADLLH---------GLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEP 145 (509)
T ss_pred HHHHHhccCCcEEEEccchhh---------hhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccCc
Confidence 999999999999999875321 111111111 111110000 0000111233455555432211
Q ss_pred CCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHH---HHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHH
Q 005501 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI---RCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (693)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~---~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 418 (693)
.....++++++++|||||||.||||+++|.+.. .........+++.++++++...|+.|..+....+.+
T Consensus 146 --------~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ 217 (509)
T PRK12406 146 --------YDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYGLRA 217 (509)
T ss_pred --------cCCCCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHHHHH
Confidence 112346899999999999999999999876543 333334456788999999999999999887666678
Q ss_pred HHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCc--CCCCCCccccEEEeecCCCCcchHHHHHhhCC
Q 005501 419 FLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW 496 (693)
Q Consensus 419 L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~ 496 (693)
+..|+++++.+ ..++..+++.++++++|++.++|+++..|+.... ....+++++|.+++||+++++++.+++.+.+
T Consensus 218 ~~~g~~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~- 295 (509)
T PRK12406 218 GRLGGVLVLQP-RFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWW- 295 (509)
T ss_pred HhhheEEEEcc-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHc-
Confidence 89999998876 4678899999999999999999999999986532 2345678999999999999999999888765
Q ss_pred CCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEEe-c-----ccCCCccccc
Q 005501 497 YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-P-----LYLGASDRLL 570 (693)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v~-~-----gy~~~~~~~~ 570 (693)
++.+++.||+||++.+.+..........+++|+|++++.++|+|+++++++.|+. ||+++. + +|.+
T Consensus 296 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~~~y~~------ 367 (509)
T PRK12406 296 GPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPLPQGEI--GEIYSRIAGNPDFTYHN------ 367 (509)
T ss_pred CCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEECCCCCCCCCCCc--eEEEEECCccccccccC------
Confidence 5789999999999875544333333445789999999999999999999999985 999983 2 3333
Q ss_pred ccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCC
Q 005501 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 650 (693)
Q Consensus 571 ~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~ 650 (693)
+++.++..+ .++||+|||+|++++||++++.||.||+||++|++|++.|||++|. ++|+|.+++|++.++..
T Consensus 368 ~~~~~~~~~-------~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~-~~~~v~~~~v~~~~~~~ 439 (509)
T PRK12406 368 KPEKRAEID-------RGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLH-AVPGVHDCAVFGIPDAE 439 (509)
T ss_pred Cchhccccc-------CCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHH-hCCCeeEEEEEeeeccc
Confidence 333444332 1239999999999999999999999999999999999999999996 89999999999998877
Q ss_pred CCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 651 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 651 ~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
.+ +.++++|++.++...+.++++++++++|++|++|..++.
T Consensus 440 ~~-~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~ 480 (509)
T PRK12406 440 FG-EALMAVVEPQPGATLDEADIRAQLKARLAGYKVPKHIEI 480 (509)
T ss_pred cC-ceeEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcEEEE
Confidence 67 889999998876566789999999999999999998775
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-56 Score=507.33 Aligned_cols=469 Identities=20% Similarity=0.236 Sum_probs=359.4
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++.+|+++|+++.+. ++||+||.++++++|.+|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 30 ~~~~p~~~a~~~~~~--------~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~ 101 (567)
T PLN02479 30 AVVHPTRKSVVHGSV--------RYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVN 101 (567)
T ss_pred HhhCCCceEEEECCc--------eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCcEEEEec
Confidence 467999999998765 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhc---------CCCceEEEcCCCCC---CCCCCCCCcccH
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA---------APLKAIVLPAIGND---VGIPLREQDLSW 332 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~---~~~~~~~~~~~~ 332 (693)
|.++.+++.+++++++++++|+++.... ....+... ....++++...... .......+...|
T Consensus 102 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (567)
T PLN02479 102 IRLNAPTIAFLLEHSKSEVVMVDQEFFT------LAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEY 175 (567)
T ss_pred cccCHHHHHHHHhhcCceEEEEchhhhh------HHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccH
Confidence 9999999999999999999999875421 11111111 11123333211100 000111234456
Q ss_pred HHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchh
Q 005501 333 KDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP 412 (693)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~ 412 (693)
.+++..... .... ......+++++++|||||||.||||+++|+++..........++++.++++++.+|++|..++
T Consensus 176 ~~~~~~~~~---~~~~-~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~ 251 (567)
T PLN02479 176 EKFLETGDP---EFAW-KPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIWGMNEGAVYLWTLPMFHCNGW 251 (567)
T ss_pred HHHHhcccc---cccc-CCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhcCCCCCCEEEEecchhhhhhH
Confidence 666553221 0000 112234577889999999999999999999987666555566788899999999999999887
Q ss_pred HHHHH-HHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCC-CCCccccEEEeecCCCCcchHHH
Q 005501 413 VILFS-SFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG-LDWTKIRSFASTGETSNVDDDLW 490 (693)
Q Consensus 413 ~~~~~-~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~-~~l~~lr~v~~gGe~l~~~~~~~ 490 (693)
...+. ++..|.++++ . ..++..+++.++++++|++..+|+++..|.+...... .+++++|.++++|+++++.+.++
T Consensus 252 ~~~~~~~~~~g~~~~~-~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~ 329 (567)
T PLN02479 252 CFTWTLAALCGTNICL-R-QVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLFA 329 (567)
T ss_pred HHHHHHHhhcCceEec-c-CCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHHH
Confidence 44443 4555555544 3 4678899999999999999999999999987543222 25688999999999999999888
Q ss_pred HHhhCCCCceecccccccccceeccCCc---------CC-CCccCccCCCCCCce-EEEEC-CCCCCCCCCCCceeeEEE
Q 005501 491 LSSKAWYNAIIESCGGTELSSAYIQGSL---------LQ-PQAFGAFSTATMTAG-LVILD-ECGVPYPDDQPCVGEVGL 558 (693)
Q Consensus 491 ~~~~~~~~~l~n~YG~TE~~~~~~~~~~---------~~-~~~~~~iG~p~~~~~-~~ild-~~~~~~p~G~~giGel~v 558 (693)
+.+. +.++++.||+||+++.++.... .. .......|.+.++.. ++|+| ++++++|.+...+|||++
T Consensus 330 ~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v 407 (567)
T PLN02479 330 MSEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVM 407 (567)
T ss_pred HHhc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEE
Confidence 7754 5789999999998643332210 00 011135688888876 89999 568888764211599998
Q ss_pred -----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhc
Q 005501 559 -----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633 (693)
Q Consensus 559 -----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~ 633 (693)
.+||++ +++.|++.|.. | ||+|||+|++++||+++|+||.||+||++|+||+|.|||++|.
T Consensus 408 ~g~~~~~GY~~------~~~~t~~~~~~-----g--~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~- 473 (567)
T PLN02479 408 RGNMVMKGYLK------NPKANEEAFAN-----G--WFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVY- 473 (567)
T ss_pred eccchhhhhhc------CcccccchhcC-----C--ceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHH-
Confidence 467777 55577777742 2 9999999999999999999999999999999999999999995
Q ss_pred cCcccceeEEEeecCCCCCceEEEEEEEecCCCC-----CChHHHHHHHHHHHHhhcCCCcee
Q 005501 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFT-----SQPDKLKMIFSKAIQSKLNPLFKV 691 (693)
Q Consensus 634 ~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~-----~~~~~l~~~l~~~L~~~m~P~~~v 691 (693)
.||.|.+++|++.++...+ +.+++++++.++.. ...++|+++++++||.|+.|..+.
T Consensus 474 ~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~ 535 (567)
T PLN02479 474 THPAVLEASVVARPDERWG-ESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVV 535 (567)
T ss_pred hCcccceeeEEeccchhcC-ceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEE
Confidence 9999999999999887766 89999999876532 234689999999999999998765
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-56 Score=502.94 Aligned_cols=469 Identities=20% Similarity=0.208 Sum_probs=360.6
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++.+|+++|+.+.+. .+||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 28 ~~~~~~~~a~~~~~~--------~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G~~~vpl~ 99 (545)
T PRK08162 28 AEVYPDRPAVIHGDR--------RRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLN 99 (545)
T ss_pred HHHCCCCeEEEECCe--------EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhCcEEeccc
Confidence 368999999998766 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC-ceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL-KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (693)
|.++.+++..++++++++.++++.... ..........+. +.+.+.............+..++..+......
T Consensus 100 ~~~~~~~~~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 171 (545)
T PRK08162 100 TRLDAASIAFMLRHGEAKVLIVDTEFA------EVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGDP-- 171 (545)
T ss_pred cccChHHHHHHHHhCCCeEEEEccchh------hHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHhccCCc--
Confidence 999999999999999999999987542 112222111222 23333322111000001123345655543211
Q ss_pred CCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHcCC
Q 005501 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGA 423 (693)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~ 423 (693)
..........+++++|+|||||||.||||+++|+++..........+++..++++++..|+.|..+....+...+.|+
T Consensus 172 --~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~g 249 (545)
T PRK08162 172 --DFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAG 249 (545)
T ss_pred --cccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHHcc
Confidence 001111223467999999999999999999999998666655556677888999999999999888754444445566
Q ss_pred EEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceecc
Q 005501 424 TLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIES 503 (693)
Q Consensus 424 ~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~ 503 (693)
+.++.. ..++..+++.++++++|++.++|++++.|++........+.+++.++++|+++++...+++... ++++++.
T Consensus 250 ~~~~~~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~ 326 (545)
T PRK08162 250 TNVCLR-KVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHV 326 (545)
T ss_pred EEEEeC-CCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHh--CCceeec
Confidence 665554 4678999999999999999999999999987644333345566777899999998888877654 6889999
Q ss_pred cccccccceeccCCcCC----------CCccCccCCCCC-CceEEEECC-CCCCCCCC-CCceeeEEE-----ecccCCC
Q 005501 504 CGGTELSSAYIQGSLLQ----------PQAFGAFSTATM-TAGLVILDE-CGVPYPDD-QPCVGEVGL-----FPLYLGA 565 (693)
Q Consensus 504 YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~-~~~~~ild~-~~~~~p~G-~~giGel~v-----~~gy~~~ 565 (693)
||+||+++.++.+.... .....+.|.+.+ +..++|+|+ +++++|.+ +. +|||++ ..||++
T Consensus 327 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~-~Gel~v~g~~~~~gY~~- 404 (545)
T PRK08162 327 YGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGET-IGEIMFRGNIVMKGYLK- 404 (545)
T ss_pred ccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCc-eeEEEEecCcchhhhcC-
Confidence 99999865443321110 011234566655 346889994 68888763 32 599998 356766
Q ss_pred cccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEe
Q 005501 566 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAIS 645 (693)
Q Consensus 566 ~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~ 645 (693)
+++.+...|.. +||+|||+|++++||+++|+||.||+||++|+||+|.|||++|. .||+|.+++|++
T Consensus 405 -----~~~~~~~~~~~-------g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~-~~~~v~~~~vv~ 471 (545)
T PRK08162 405 -----NPKATEEAFAG-------GWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLY-RHPAVLVAAVVA 471 (545)
T ss_pred -----ChhhhHHHhhC-------CCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHH-hCCcccEEEEEe
Confidence 45566666641 29999999999999999999999999999999999999999995 999999999999
Q ss_pred ecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCcee
Q 005501 646 VSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 691 (693)
Q Consensus 646 ~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v 691 (693)
.+++..+ +.+++||+++++...+.++++++++++|+.|++|..++
T Consensus 472 ~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~ 516 (545)
T PRK08162 472 KPDPKWG-EVPCAFVELKDGASATEEEIIAHCREHLAGFKVPKAVV 516 (545)
T ss_pred eeccccC-ceEEEEEEeCCCCCCCHHHHHHHHHHhcccccCCcEEE
Confidence 9887776 89999999988766778899999999999999998775
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-56 Score=497.76 Aligned_cols=464 Identities=19% Similarity=0.179 Sum_probs=364.8
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
.++++|+++|+++...+ +.+||+||.++++++|++|++. +++|++|+++++|++++++++|||+++|++++|+
T Consensus 6 ~a~~~p~~~a~~~~~~~------~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l 79 (511)
T PRK13391 6 HAQTTPDKPAVIMASTG------EVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCV 79 (511)
T ss_pred hHhhCCCceEEEecCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecc
Confidence 34789999999875331 2899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCC--ceEEEcCCCCCCCCCCCCCcccHHHHhcccCC
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (693)
++.++.+++.++++++++++++++.... ..........+. ..+.+...... .....+.+.......
T Consensus 80 ~~~~~~~~l~~~l~~~~~~~li~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 147 (511)
T PRK13391 80 NSHLTPAEAAYIVDDSGARALITSAAKL------DVARALLKQCPGVRHRLVLDGDGEL------EGFVGYAEAVAGLPA 147 (511)
T ss_pred ccccCHHHHHHHHhccCCcEEEEchhhH------HHHHHHHhcCCCceEEEEecCCCCC------cccccHHHHhcCCCC
Confidence 9999999999999999999999987532 111112222211 12222111100 111223333221111
Q ss_pred CCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEec--chhHH---HHHHHhchhcCCCCCCEEEEeCCccccchhHHHH
Q 005501 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWT--QLSSI---RCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILF 416 (693)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~s--h~~l~---~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~ 416 (693)
....+.++.++++|||||||.||||+++ |.++. +........+++.+++++++..|++|+.++...+
T Consensus 148 --------~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~ 219 (511)
T PRK13391 148 --------TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVM 219 (511)
T ss_pred --------CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHHHHH
Confidence 0112345679999999999999999964 65543 2233344567788899999999999998887778
Q ss_pred HHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCc--CCCCCCccccEEEeecCCCCcchHHHHHhh
Q 005501 417 SSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSK 494 (693)
Q Consensus 417 ~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~ 494 (693)
.++..|+++++.+ ..++..+++.++++++|++.++|+++..+.+... ....+++++|.+++||+++++++.+++.+.
T Consensus 220 ~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~ 298 (511)
T PRK13391 220 LVIRLGGTVIVME-HFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDW 298 (511)
T ss_pred HHHHcCceEEECC-CCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHH
Confidence 8999999999986 4678999999999999999999999998876532 223457899999999999999999888876
Q ss_pred CCCCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEEe----cccCCCccccc
Q 005501 495 AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF----PLYLGASDRLL 570 (693)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v~----~gy~~~~~~~~ 570 (693)
+ +..+++.||+||++..............+++|+|+++ .++|+|+++++++.|+. |||++. .+|++
T Consensus 299 ~-g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d~~~~~~~~g~~--Gel~~~g~~~~gy~~------ 368 (511)
T PRK13391 299 W-GPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILDDDGAELPPGEP--GTIWFEGGRPFEYLN------ 368 (511)
T ss_pred c-CCceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEECCCCCCCCCCCc--eEEEEecCcceEEcC------
Confidence 5 5789999999999875443332223445789999999 69999999999999985 999983 23333
Q ss_pred ccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCC
Q 005501 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 650 (693)
Q Consensus 571 ~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~ 650 (693)
+++.++..|..+ .+||+|||+|++++||.+++.||.||++|++|++|++.|||++|. +||.|.+|+|+++++..
T Consensus 369 ~~~~~~~~~~~~-----~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~-~~~~v~~~~v~~~~~~~ 442 (511)
T PRK13391 369 DPAKTAEARHPD-----GTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLI-THPKVADAAVFGVPNED 442 (511)
T ss_pred ChhHhHHhhccC-----CCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHH-hCCCcceEEEEecCCcc
Confidence 455666655432 249999999999999999999999999999999999999999996 89999999999998887
Q ss_pred CCceEEEEEEEecCCCCC---ChHHHHHHHHHHHHhhcCCCceec
Q 005501 651 GGPEVLVIFVVLKKGFTS---QPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 651 ~g~~~l~a~vv~~~~~~~---~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
.+ +.+++++++.++... ..++++++++++||.|+.|..+..
T Consensus 443 ~g-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~ 486 (511)
T PRK13391 443 LG-EEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRSIDF 486 (511)
T ss_pred cC-ceeEEEEEECCCCCcccchHHHHHHHHHhhcccCcCCcEEEE
Confidence 77 889999998764322 247899999999999999998764
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-56 Score=483.78 Aligned_cols=388 Identities=13% Similarity=0.098 Sum_probs=332.5
Q ss_pred EEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHH
Q 005501 194 AIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (693)
Q Consensus 194 Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l 272 (693)
++++.++ ++||+||.++++++|+.|. . +++|++|+|+++|++++++++||++++|++++|+|+..+.+++
T Consensus 1 ~~~~~~~--------~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~ 71 (414)
T PRK08308 1 MLIVNDE--------EYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAA 71 (414)
T ss_pred CeEecCc--------eecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHH
Confidence 3566666 9999999999999999985 6 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCCCCCCCcc
Q 005501 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVY 352 (693)
Q Consensus 273 ~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (693)
..++++++++.+++++... . ... ...
T Consensus 72 ~~~~~~~~~~~~i~~~~~~------~---------------------------------~~~---------------~~~ 97 (414)
T PRK08308 72 IRMAKRAGCHGLLYGESDF------T---------------------------------KLE---------------AVN 97 (414)
T ss_pred HHHHHhCCCCEEEecCccc------c---------------------------------ccc---------------CCC
Confidence 9999999999999875210 0 000 001
Q ss_pred CCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchh-HHHHHHHHcCCEEEEecCC
Q 005501 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGS 431 (693)
Q Consensus 353 ~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvi~~~~ 431 (693)
..+++++||+|||||||.||||+++|+++.+.+......+++..+|+++..+|++|++++ ..++.+|..|+++++.+ .
T Consensus 98 ~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~-~ 176 (414)
T PRK08308 98 YLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIIT-N 176 (414)
T ss_pred CCCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecC-C
Confidence 245789999999999999999999999999888877788888999999999999999987 56889999999999986 4
Q ss_pred CChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceecccccccccc
Q 005501 432 PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSS 511 (693)
Q Consensus 432 ~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 511 (693)
.++..+++.++++++|++.++|+++..+.+.... ..+++.+++||+++++++.+.+++. ..+++|.||+||++.
T Consensus 177 ~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~ 250 (414)
T PRK08308 177 KNPKFALNILRNTPQHILYAVPLMLHILGRLLPG----TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGC 250 (414)
T ss_pred CCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc----cccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCC
Confidence 6788999999999999999999999999875321 1368899999999999998888765 468999999999986
Q ss_pred eeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEEecccCCCcccccccccccccccccccCCCceee
Q 005501 512 AYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLR 591 (693)
Q Consensus 512 ~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~y 591 (693)
...... ....+++|+|++++++++.++. |.+ ||+++.. +.+||
T Consensus 251 ~~~~~~---~~~~~~~G~p~~~~~~~~~~~~------~~~--gel~v~~--------------------------~~~~~ 293 (414)
T PRK08308 251 VSICPD---MKSHLDLGNPLPHVSVSAGSDE------NAP--EEIVVKM--------------------------GDKEI 293 (414)
T ss_pred eeecCC---CCCCCccCccCCCeEEEEecCC------CCC--ceEEEEc--------------------------CCceE
Confidence 433221 2345679999999999997642 443 8998842 12399
Q ss_pred eecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecCCCCCChH
Q 005501 592 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPD 671 (693)
Q Consensus 592 rTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~ 671 (693)
+|||+|++++||+++|+||.|++||++|+||+|.|||++|. ++|+|.+|+|++.+++..+ +.++++++.+. ..+.+
T Consensus 294 ~TGDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~-~~~~v~~a~v~~~~~~~~~-~~~~~~v~~~~--~~~~~ 369 (414)
T PRK08308 294 FTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVML-RLPGVQEAVVYRGKDPVAG-ERVKAKVISHE--EIDPV 369 (414)
T ss_pred ECCceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHH-hCCCeeEEEEEeccCCCCC-ceEEEEEEeCC--CCCHH
Confidence 99999999999999999999999999999999999999995 9999999999999988777 88999998765 46778
Q ss_pred HHHHHHHHHHHhhcCCCceec
Q 005501 672 KLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 672 ~l~~~l~~~L~~~m~P~~~v~ 692 (693)
+++++++++|+.|++|..++.
T Consensus 370 ~l~~~l~~~l~~~~~P~~i~~ 390 (414)
T PRK08308 370 QLREWCIQHLAPYQVPHEIES 390 (414)
T ss_pred HHHHHHHHhCccccCCcEEEE
Confidence 999999999999999988764
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=491.66 Aligned_cols=412 Identities=16% Similarity=0.160 Sum_probs=341.1
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++++|+++|+++.+. .+||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 13 a~~~~~~~a~~~~~~--------~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v~~~ 84 (458)
T PRK09029 13 AQVRPQAIALRLNDE--------VLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLN 84 (458)
T ss_pred HHhCCCceeeecCCc--------ceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEeecC
Confidence 368999999997766 999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPR 344 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (693)
+..+.+++..+++++++++++++++... ...+ . ...+.. ..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~-----------~-------------~~~~~~-----~~--- 125 (458)
T PRK09029 85 PQLPQPLLEELLPSLTLDFALVLEGENT-------FSAL-----------T-------------SLHLQL-----VE--- 125 (458)
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcCcccc-------hhhc-----------c-------------cccccc-----cc---
Confidence 9999999999999999999999875310 0000 0 000000 00
Q ss_pred CCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHcCCE
Q 005501 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT 424 (693)
Q Consensus 345 ~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~ 424 (693)
........++++++++|||||||.||||+++|++++..+......+++.++|+++...|++|.+++..++.+|+.|++
T Consensus 126 --~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~ 203 (458)
T PRK09029 126 --GAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLMPFTAQDSWLLSLPLFHVSGQGIVWRWLYAGAT 203 (458)
T ss_pred --ccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcCCCCccceEEEecCcHhhhhhHHHHHHHhCCce
Confidence 011123457899999999999999999999999999988877788899999999999999999998777789999999
Q ss_pred EEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceeccc
Q 005501 425 LALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504 (693)
Q Consensus 425 lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (693)
+++.+. ..+++.+ .++|.+..+|+++..++..... ..++|.+++||+++++.+.+++... +.++++.|
T Consensus 204 v~~~~~----~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~Y 271 (458)
T PRK09029 204 LVVRDK----QPLEQAL--AGCTHASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGY 271 (458)
T ss_pred EEeCCh----HHHHHHH--hhceeeecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccc
Confidence 998764 4566776 4899999999999998876432 3479999999999999998887654 68899999
Q ss_pred ccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccccccccc
Q 005501 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYF 579 (693)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f 579 (693)
|+||++...+.... ....++|+|+++++++|+| |||++ ..||++. ++.+..
T Consensus 272 G~tE~~~~~~~~~~---~~~~~~G~~~~~~~~~i~~-------------gel~v~g~~~~~gY~~~------~~~~~~-- 327 (458)
T PRK09029 272 GLTEMASTVCAKRA---DGLAGVGSPLPGREVKLVD-------------GEIWLRGASLALGYWRQ------GQLVPL-- 327 (458)
T ss_pred cccccCcceeccCC---CCCCCCCCCCCCCEEEEeC-------------CEEEEecCceeeeeecC------cccccc--
Confidence 99999864333221 2234699999999999986 56665 5677763 223321
Q ss_pred cccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEE
Q 005501 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIF 659 (693)
Q Consensus 580 ~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~ 659 (693)
..+.+||+|||+|+++ ||+++|.||+||+||++|++|+|.|||++|. +||+|.+|+|++.+++..+ +.++++
T Consensus 328 -----~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~a~ 399 (458)
T PRK09029 328 -----VNDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVIN-QHPLVQQVFVVPVADAEFG-QRPVAV 399 (458)
T ss_pred -----ccCCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHh-cCCCcceEEEEccCCcccC-ceEEEE
Confidence 1234599999999999 9999999999999999999999999999995 9999999999999998877 899999
Q ss_pred EEecCCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 660 VVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 660 vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
|+.+. ..+.++|+++|+++||.|+.|..++.
T Consensus 400 v~~~~--~~~~~~l~~~~~~~l~~~~~P~~~~~ 430 (458)
T PRK09029 400 VESDS--EAAVVNLAEWLQDKLARFQQPVAYYL 430 (458)
T ss_pred EEcCc--ccCHHHHHHHHHhhchhccCCeEEEE
Confidence 99774 35678999999999999999988764
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=512.99 Aligned_cols=457 Identities=18% Similarity=0.160 Sum_probs=339.3
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++++||++|+++.+. ..+.++.+||+||.++++++|++|++. +++||+|+++++|++++++++|||+++|++++|++
T Consensus 59 a~~~pd~~a~~~~~~--~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~ 136 (624)
T PRK12582 59 AAEAPDRPWLAQREP--GHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVS 136 (624)
T ss_pred HHHCCCchheecccC--CCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCeEeecc
Confidence 478999999987542 113356999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCH-----HHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhccc
Q 005501 265 DSFAA-----REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSV 339 (693)
Q Consensus 265 p~~~~-----~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (693)
|.++. +++.+++++++++++|+++... ..............++.+..... ......+.++....
T Consensus 137 p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~ 205 (624)
T PRK12582 137 PAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAP-----FARALAALDLLDVTVVHVTGPGE------GIASIAFADLAATP 205 (624)
T ss_pred CccccccCCHHHHHHHHHhcCCcEEEecCHHH-----HHHHHHhhhhcCceEEEEcCCCc------ccccccHHHHhhcC
Confidence 99985 8999999999999999986310 00000001111122333321110 01223455554322
Q ss_pred CCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCC---CCEEEEeCCccccchh-HHH
Q 005501 340 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV---GDVYCWPTNLGWVMGP-VIL 415 (693)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~---~d~~l~~~~~~~~~~~-~~~ 415 (693)
.. ...........++++++|+|||||||.||||+++|+++.+.+......+.... +++++.++|++|.++. ..+
T Consensus 206 ~~--~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~ 283 (624)
T PRK12582 206 PT--AAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANF 283 (624)
T ss_pred Cc--chhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhccccCCCCCceEEEechHHHHHhHHHHH
Confidence 11 00001112245789999999999999999999999999877665544444444 5799999999999987 456
Q ss_pred HHHHHcCCEEEEecCCCChh---hHHHHHHHcCCcEEeechHHHHHHHhcCcCC----CCCCccccEEEeecCCCCcchH
Q 005501 416 FSSFLNGATLALYQGSPLER---SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE----GLDWTKIRSFASTGETSNVDDD 488 (693)
Q Consensus 416 ~~~L~~G~~lvi~~~~~~~~---~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~----~~~l~~lr~v~~gGe~l~~~~~ 488 (693)
+.+|..|+++++.+..+++. .+++.++++++|++.++|++++.|++..... ..++++||.+++||+++++++.
T Consensus 284 ~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~~~~ 363 (624)
T PRK12582 284 NGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLY 363 (624)
T ss_pred HHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCCHHHH
Confidence 78899999999976444433 4567788999999999999999887542111 1246799999999999999999
Q ss_pred HHHHhhC----C-CCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----
Q 005501 489 LWLSSKA----W-YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL----- 558 (693)
Q Consensus 489 ~~~~~~~----~-~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v----- 558 (693)
+++.+.+ . +++++|.||+||++.+.+.... .....+++|+|++|++++|+ |.|+ +|||++
T Consensus 364 ~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~-~~~~~~svG~p~pg~~v~i~-------~~G~--~GEl~vrg~~v 433 (624)
T PRK12582 364 ERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHW-DTERVGLIGLPLPGVELKLA-------PVGD--KYEVRVKGPNV 433 (624)
T ss_pred HHHHHHHHhhcCCCceEEeccccccccceeecccC-CCCCCCCCCcCCCCcEEEEc-------cCCC--ceEEEEECCcc
Confidence 8887652 1 3579999999999865442222 23456789999999999985 4566 499998
Q ss_pred ecccCCCcccccccccccccccccccCCCceeeeecceEEE-e---cCCcEEEEeecCCcccc-CCeeeehHHHH--HHH
Q 005501 559 FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKR-T---VGGYIIVQGRADDTMNL-GGIKTSSVEIE--RVC 631 (693)
Q Consensus 559 ~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~-~---~dG~l~~~GR~dd~ik~-~G~ri~~~eIE--~~L 631 (693)
..||++ +++.|++.|.. ++||+|||+|++ + +||+|+|+||+||+||+ +|++|+|.||| .++
T Consensus 434 ~~GY~~------~p~~t~~~f~~------dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l 501 (624)
T PRK12582 434 TPGYHK------DPELTAAAFDE------EGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVA 501 (624)
T ss_pred cccccC------CccchhhhcCc------cCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHHHHHHH
Confidence 456776 55577777753 239999999999 4 46999999999999995 69999999885 677
Q ss_pred hccCcccceeEEEeecCCCCCceEEEEEEEecC----------CC----CCChHHHHHHHHHHHHhhc
Q 005501 632 DQADESILETAAISVSPAGGGPEVLVIFVVLKK----------GF----TSQPDKLKMIFSKAIQSKL 685 (693)
Q Consensus 632 ~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~----------~~----~~~~~~l~~~l~~~L~~~m 685 (693)
. +||.|.+|+|++++++ .+.+.|++.. +. .++.++++++++++|..+.
T Consensus 502 ~-~~p~V~~a~VvG~~~~-----~~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 563 (624)
T PRK12582 502 A-CSPVIHDAVVAGQDRA-----FIGLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHN 563 (624)
T ss_pred h-cCcchheEEEEcCCCC-----cEEEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHH
Confidence 4 8999999999998653 4445544321 11 1244689999999999987
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-55 Score=492.45 Aligned_cols=444 Identities=19% Similarity=0.133 Sum_probs=353.6
Q ss_pred eecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEee
Q 005501 209 LMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 287 (693)
Q Consensus 209 ~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~ 287 (693)
.+||+||.++++++|++|.+. +++||+|+++++|++++++++|||+++|++++|+++.++.+++..+++++++++++++
T Consensus 11 ~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii~~ 90 (502)
T PRK08276 11 VVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLIVS 90 (502)
T ss_pred EEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEEEc
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999998
Q ss_pred cceeeCCccccchhhHhhcCC--CceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEecc
Q 005501 288 DFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS 365 (693)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TS 365 (693)
+... .......+..+ ...+.+.... ......|++....... ......++.++++|||
T Consensus 91 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--------~~~~~~~~~a~i~~TS 149 (502)
T PRK08276 91 AALA------DTAAELAAELPAGVPLLLVVAGP-------VPGFRSYEEALAAQPD--------TPIADETAGADMLYSS 149 (502)
T ss_pred cchh------hHHHHHhhhccccccEEEEeCCC-------CCccccHHHHHhcCCC--------CCCCCCCcceEEEECC
Confidence 7532 11112222221 1222221100 0112334444332111 1112456789999999
Q ss_pred CCCCCcceEEecchhHHHH------HHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHcCCEEEEecCCCChhhHHH
Q 005501 366 GTTGEPKAIPWTQLSSIRC------TAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGK 439 (693)
Q Consensus 366 GSTG~PKgV~~sh~~l~~~------~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvi~~~~~~~~~~~~ 439 (693)
||||.||||+++|+++... .......+....++++++..|+.|.+++...+.++..|+++++.+ ..++..+++
T Consensus 150 GtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~ 228 (502)
T PRK08276 150 GTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVME-KFDAEEALA 228 (502)
T ss_pred CCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcC-CCCHHHHHH
Confidence 9999999999998875422 122222233357789999999999998877778999999998876 467899999
Q ss_pred HHHHcCCcEEeechHHHHHHHhcCcC--CCCCCccccEEEeecCCCCcchHHHHHhhCCCCceecccccccccceeccCC
Q 005501 440 FVQDAGVTVLGTVPSLVKAWRNTNCL--EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGS 517 (693)
Q Consensus 440 ~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~ 517 (693)
.++++++|++.++|+++..+++.... ...+++++|.+++||++++.++.+++.+.+ +..+++.||+||++.+++...
T Consensus 229 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~ 307 (502)
T PRK08276 229 LIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWW-GPIIHEYYASSEGGGVTVITS 307 (502)
T ss_pred HHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHh-CcHhhhhcccccccceeEecC
Confidence 99999999999999999999876432 345688999999999999999999988776 577999999999987544433
Q ss_pred cCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEEe-----cccCCCcccccccccccccccccccCCCceeee
Q 005501 518 LLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF-----PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRR 592 (693)
Q Consensus 518 ~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v~-----~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yr 592 (693)
.......+++|+|+ ++.++|+|+++++++.|+. ||+++. .||++ +++.+.+.|.++ +||+
T Consensus 308 ~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~g~~--Gel~v~~~~~~~gy~~------~~~~~~~~~~~~------~~~~ 372 (502)
T PRK08276 308 EDWLAHPGSVGKAV-LGEVRILDEDGNELPPGEI--GTVYFEMDGYPFEYHN------DPEKTAAARNPH------GWVT 372 (502)
T ss_pred ccccccCCCcceec-ccEEEEECCCCCCCcCCCc--eEEEEECCCccchhcC------CHHHHHHHhcCC------Ccee
Confidence 32234457899999 8899999999999999984 999994 34444 445666666543 3999
Q ss_pred ecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecCCCCCCh--
Q 005501 593 HGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP-- 670 (693)
Q Consensus 593 TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~-- 670 (693)
|||+|++++||.+++.||+|++||++|++|++.|||.+|. +||+|.+++|+++.++..+ +.+++||+++++...+.
T Consensus 373 TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~~~~~~~~ 450 (502)
T PRK08276 373 VGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLV-THPKVADVAVFGVPDEEMG-ERVKAVVQPADGADAGDAL 450 (502)
T ss_pred ecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHH-hCCCcceEEEEeCCCcccC-ceEEEEEEECCCCCCChhh
Confidence 9999999999999999999999999999999999999996 8999999999999888777 89999999987644332
Q ss_pred -HHHHHHHHHHHHhhcCCCceec
Q 005501 671 -DKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 671 -~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
++++++++++|+.+|.|..++.
T Consensus 451 ~~~i~~~~~~~l~~~~~p~~i~~ 473 (502)
T PRK08276 451 AAELIAWLRGRLAHYKCPRSIDF 473 (502)
T ss_pred HHHHHHHHHhhccCCCCCcEEEE
Confidence 3799999999999999988875
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=536.82 Aligned_cols=458 Identities=18% Similarity=0.176 Sum_probs=356.0
Q ss_pred CCC-CCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 005501 187 RKE-DNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (693)
Q Consensus 187 ~~~-pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p 265 (693)
+++ |+++|+.+.+. +++||+||+++++++|++|++-+++||+|+++++|++++++++|||+++|++++|+||
T Consensus 642 ~~~~~~~~ai~~~~~-------~~~Ty~el~~~~~~lA~~L~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~~ 714 (1140)
T PRK06814 642 KIHGFKKLAVEDPVN-------GPLTYRKLLTGAFVLGRKLKKNTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINF 714 (1140)
T ss_pred HHcCCCCeEeECCCC-------CccCHHHHHHHHHHHHHHHHhcCCCCCeEEEEcCCchHHHHHHHHHHHCCCEEEEcCC
Confidence 455 46788876433 2899999999999999999633999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCC--CceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCC
Q 005501 266 SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP--LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343 (693)
Q Consensus 266 ~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (693)
.++.+++.+++++++++++++++......+ .....+..+ ..++.++.... ....++.+...... .
T Consensus 715 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~-~ 781 (1140)
T PRK06814 715 SAGIANILSACKAAQVKTVLTSRAFIEKAR----LGPLIEALEFGIRIIYLEDVRA--------QIGLADKIKGLLAG-R 781 (1140)
T ss_pred CCCHHHHHHHHHHcCCCEEEecHHHHhhhc----chhHHHHhccCceEEEehHhhc--------cCChHHHHHHHhhc-c
Confidence 999999999999999999999875432111 011111111 12232221110 00111111110000 0
Q ss_pred CCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchh-HHHHHHHHcC
Q 005501 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNG 422 (693)
Q Consensus 344 ~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G 422 (693)
.+. .......++|+++|+|||||||.||||+++|+++.+.+......++++++|++++.+|+.|.+++ +.++.++..|
T Consensus 782 ~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G 860 (1140)
T PRK06814 782 FPL-VYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSG 860 (1140)
T ss_pred CCc-cccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcC
Confidence 000 01113467999999999999999999999999999888888888899999999999999999998 7788999999
Q ss_pred CEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceec
Q 005501 423 ATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIE 502 (693)
Q Consensus 423 ~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n 502 (693)
+++++.+...+...+.+.++++++|++..+|++++.+.+.. ...+++++|.+++|||++++++.+++.+.+ +++++|
T Consensus 861 ~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~~~~~ 937 (1140)
T PRK06814 861 VKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILE 937 (1140)
T ss_pred CEEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHh-CCcEEe
Confidence 99999875556677889999999999999999999987653 345678999999999999999988888776 678999
Q ss_pred ccccccccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccccccc
Q 005501 503 SCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEV 577 (693)
Q Consensus 503 ~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~ 577 (693)
.||+||++...+...+ .....+++|+|++|+++++.+..+ .|+ .|||++ ..||++.+ + ..
T Consensus 938 ~YG~TE~~~~~~~~~~-~~~~~~~vG~p~~g~~~~~~~~~~----~~~--~Gel~v~g~~~~~gY~~~~------~--~~ 1002 (1140)
T PRK06814 938 GYGVTETAPVIALNTP-MHNKAGTVGRLLPGIEYRLEPVPG----IDE--GGRLFVRGPNVMLGYLRAE------N--PG 1002 (1140)
T ss_pred ccccccccceEEecCC-CCCCCCcCCccCCCCeEEEeecCC----CCC--ceEEEEeCCCcchhhcCCC------C--CC
Confidence 9999999875544332 234567899999999999987543 245 399998 34555421 1 11
Q ss_pred cccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEE
Q 005501 578 YFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (693)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 657 (693)
.+.. .+++||+|||+|++|+||+++|+||.||+||++|+||+|.|||++|. +||+|.+++|++++++..| +.++
T Consensus 1003 ~~~~----~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~-~~~~v~~~~vv~~~~~~~g-~~~~ 1076 (1140)
T PRK06814 1003 VLEP----PADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAA-ELWPDALHAAVSIPDARKG-ERII 1076 (1140)
T ss_pred cccc----CCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHH-hcCCcccEEEEEcccCCCC-ceEE
Confidence 1111 13459999999999999999999999999999999999999999995 9999999999999998887 7888
Q ss_pred EEEEecCCCCCChHHHHHHHHHH-HHhhcCCCceec
Q 005501 658 IFVVLKKGFTSQPDKLKMIFSKA-IQSKLNPLFKVW 692 (693)
Q Consensus 658 a~vv~~~~~~~~~~~l~~~l~~~-L~~~m~P~~~v~ 692 (693)
+++.. .+.+.++++++++++ |++|++|..++.
T Consensus 1077 ~~~~~---~~~~~~~l~~~~~~~~l~~~~~P~~i~~ 1109 (1140)
T PRK06814 1077 LLTTA---SDATRAAFLAHAKAAGASELMVPAEIIT 1109 (1140)
T ss_pred EEEcC---CCcCHHHHHHHHHHcCCCcccCCcEEEE
Confidence 77652 245678999999975 999999998764
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-55 Score=493.76 Aligned_cols=439 Identities=18% Similarity=0.175 Sum_probs=341.5
Q ss_pred ceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCC-------HHHHHHHHHh
Q 005501 207 VNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA-------AREIATRLRV 278 (693)
Q Consensus 207 ~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~~~-------~~~l~~~l~~ 278 (693)
.+.+||+||+++++++|++|+++ +++||+|+++++|++++++++|||+++|++++|+|+..+ .+++.++++.
T Consensus 47 ~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~ 126 (579)
T PRK09192 47 EEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLAS 126 (579)
T ss_pred EEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHcCCeeEeccCCcccccchHHHHHHHHHHHh
Confidence 35899999999999999999999 999999999999999999999999999999999987543 6899999999
Q ss_pred cCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCe
Q 005501 279 SKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAV 358 (693)
Q Consensus 279 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (693)
++++++|+++... +.+........ ... ..++.++...... ........++++
T Consensus 127 ~~~~~il~~~~~~------~~~~~~~~~~~-~~~----------------~~~~~~~~~~~~~-----~~~~~~~~~~~~ 178 (579)
T PRK09192 127 AQPAAIITPDELL------PWVNEATHGNP-LLH----------------VLSHAWFKALPEA-----DVALPRPTPDDI 178 (579)
T ss_pred cCCCEEEeChHHH------HHHHHhhcccc-ccc----------------eeehhhhcccCCC-----ccccCCCCCCCe
Confidence 9999999987532 11111110110 000 1123333221111 111123456899
Q ss_pred EEEEeccCCCCCcceEEecchhHHHHHHHhch-hcCCCCCCEEEEeCCccccchhHH-HHHHHHcCCEEEEecCC---CC
Q 005501 359 VNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA-HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PL 433 (693)
Q Consensus 359 a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~-~~~~~~~d~~l~~~~~~~~~~~~~-~~~~L~~G~~lvi~~~~---~~ 433 (693)
+||+|||||||.||||+++|++++..+..... .+++.++|+++++.|++|++++.. ++.++..|+++++.+.. .+
T Consensus 179 a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~ 258 (579)
T PRK09192 179 AYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARR 258 (579)
T ss_pred EEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHC
Confidence 99999999999999999999999888877766 788999999999999999999854 66788999998776521 25
Q ss_pred hhhHHHHHHHcCCcEEeechHHHHHHHhcCc---CCCCCCccccEEEeecCCCCcchHHHHHhhCC-----CCceecccc
Q 005501 434 ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC---LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-----YNAIIESCG 505 (693)
Q Consensus 434 ~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~---~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~-----~~~l~n~YG 505 (693)
+..+++.+.++++|++..+|.++..+..... ....+++++|.+++||+++++.+.+.+.+.++ ...+++.||
T Consensus 259 ~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG 338 (579)
T PRK09192 259 PLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYG 338 (579)
T ss_pred HHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccc
Confidence 6789999999999987776665555443221 12356789999999999999999888776653 135899999
Q ss_pred cccccceeccCCcCCC---------------------------CccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE
Q 005501 506 GTELSSAYIQGSLLQP---------------------------QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL 558 (693)
Q Consensus 506 ~TE~~~~~~~~~~~~~---------------------------~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v 558 (693)
+||++..++....... ....++|+|+||++++|+|+++++++.|+ +|||++
T Consensus 339 ~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d~~~~~~~~g~--~Gel~i 416 (579)
T PRK09192 339 LAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNEAGMPLPERV--VGHICV 416 (579)
T ss_pred cccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEECCCCCCCCCCC--EEEEEe
Confidence 9999865543321100 11247899999999999999999999998 599998
Q ss_pred -----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhc
Q 005501 559 -----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633 (693)
Q Consensus 559 -----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~ 633 (693)
..||++ + ..+.+.|.. +.||+|||+|++ +||+++|+||+||+||++|++|+|.|||++|.
T Consensus 417 ~g~~~~~gY~~------~-~~~~~~~~~------dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~- 481 (579)
T PRK09192 417 RGPSLMSGYFR------D-EESQDVLAA------DGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAE- 481 (579)
T ss_pred cCCchhhhhcC------C-ccccccccC------CceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHH-
Confidence 345655 2 344545543 239999999999 99999999999999999999999999999995
Q ss_pred cCcccc--eeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHH-hhcCCCceec
Q 005501 634 ADESIL--ETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQ-SKLNPLFKVW 692 (693)
Q Consensus 634 ~~p~V~--~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~-~~m~P~~~v~ 692 (693)
.||+|. +|+|++++++. + +.++++++..++...+.++|+++++++++ .++.|..+.+
T Consensus 482 ~~p~V~~~~~~v~~~~~~~-~-~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~ 541 (579)
T PRK09192 482 QEPELRSGDAAAFSIAQEN-G-EKIVLLVQCRISDEERRGQLIHALAALVRSEFGVEAAVEL 541 (579)
T ss_pred hcCCccCCcEEEEEeccCC-C-eeEEEEEEecCCChHHHHHHHHHHHHHHHHHhCCCceEEE
Confidence 999998 89999998874 4 68999998877655667899999999986 5778876543
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-54 Score=471.85 Aligned_cols=412 Identities=20% Similarity=0.228 Sum_probs=337.1
Q ss_pred cHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeecc
Q 005501 211 TYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 289 (693)
Q Consensus 211 TY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~ 289 (693)
||+||.++++++|+.|++. +++||+|+|+++|++++++++|||+++|++++|+++.++.+++..++++++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 8999999999999999999 999999999999999999999999999999999999999999999999999999999875
Q ss_pred eeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCC
Q 005501 290 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369 (693)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG 369 (693)
... ... ....+.++...... ..........+++++++|||||||
T Consensus 81 ~~~--~~~------------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGtTG 124 (436)
T TIGR01923 81 LEE--KDF------------------------------QADSLDRIEAAGRY----ETSLSASFNMDQIATLMFTSGTTG 124 (436)
T ss_pred ccc--cce------------------------------eecchHhhhhcccc----cccccccCCcCceEEEEeCCCCCC
Confidence 310 000 00011111111110 001112345689999999999999
Q ss_pred CcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEE
Q 005501 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL 449 (693)
Q Consensus 370 ~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l 449 (693)
.||+|+++|+++...+.+....++++++|++++..|+.|..++..++.++..|+++++.+.. ..+++.++++++|++
T Consensus 125 ~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~---~~~~~~l~~~~~t~~ 201 (436)
T TIGR01923 125 KPKAVPHTFRNHYASAVGSKENLGFTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKF---NQLLEMIANERVTHI 201 (436)
T ss_pred CCcEEEEehHHHHHHHHHHHhhcCCCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchH---HHHHHHHHHhCCeEE
Confidence 99999999999988888888889999999999999999999888889999999999998642 389999999999999
Q ss_pred eechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCccCccCC
Q 005501 450 GTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST 529 (693)
Q Consensus 450 ~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~ 529 (693)
.++|+++..|.+.... .+++|.+++|||++++++.+++... +..++|.||+||++..++...........++|+
T Consensus 202 ~~~P~~l~~l~~~~~~----~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 275 (436)
T TIGR01923 202 SLVPTQLNRLLDEGGH----NENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEMLHARPDVGR 275 (436)
T ss_pred EeHHHHHHHHHhCcCC----CCceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCccccccccCCCc
Confidence 9999999999876432 2689999999999999998877653 788999999999987555443322222235899
Q ss_pred CCCCceEEE-ECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCC
Q 005501 530 ATMTAGLVI-LDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGG 603 (693)
Q Consensus 530 p~~~~~~~i-ld~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG 603 (693)
|+++++++| .|+.+ + .|||++ ..||++ +++.+...+ +.+||+|||+|++++||
T Consensus 276 ~~~~~~~~i~~~~~~------~--~Gel~v~~~~~~~gy~~------~~~~~~~~~-------~~~~~~TGD~~~~~~dg 334 (436)
T TIGR01923 276 PLAGREIKIKVDNKE------G--HGEIMVKGANLMKGYLY------QGELTPAFE-------QQGWFNTGDIGELDGEG 334 (436)
T ss_pred cCCCcEEEEEeCCCC------C--ceEEEEECCccchhhCC------Chhhhhhhh-------cCCCeeccceEEEcCCC
Confidence 999999999 44332 3 499998 345554 222333222 23499999999999999
Q ss_pred cEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHh
Q 005501 604 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS 683 (693)
Q Consensus 604 ~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~ 683 (693)
++++.||.||+||++|.+|++.|||.+|. .+|.|.+++|++.++...+ ..++++++++++ .+..++.++++++|+.
T Consensus 335 ~~~~~GR~~d~i~~~G~~v~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~~~--~~~~~l~~~l~~~l~~ 410 (436)
T TIGR01923 335 FLYVLGRRDDLIISGGENIYPEEIETVLY-QHPGIQEAVVVPKPDAEWG-QVPVAYIVSESD--ISQAKLIAYLTEKLAK 410 (436)
T ss_pred CEEEeccccCeEEeCCEeeCHHHHHHHHH-hCCCeeEEEEeCCcchhcC-CeeEEEEEECCC--CCHHHHHHHHHHhhhC
Confidence 99999999999999999999999999995 8999999999998877666 889999998763 5678999999999999
Q ss_pred hcCCCceec
Q 005501 684 KLNPLFKVW 692 (693)
Q Consensus 684 ~m~P~~~v~ 692 (693)
+++|.+++.
T Consensus 411 ~~~p~~i~~ 419 (436)
T TIGR01923 411 YKVPIAFEK 419 (436)
T ss_pred CCCCeEEEE
Confidence 999998764
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=484.61 Aligned_cols=454 Identities=18% Similarity=0.181 Sum_probs=331.7
Q ss_pred CCCCCCcEEEEEecCCC-CCCcceeecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRC-DESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~-~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
+..+|+++|+++.+... ..+..+++||+||.++++++|++|.+.-++||+|+|+++|++++++++|||+++|++++|++
T Consensus 11 a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g~~gd~V~l~~~n~~~~~~~~lA~~~~G~v~vpl~ 90 (578)
T PRK05850 11 ASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHGSTGDRAVILAPQGLEYIVAFLGALQAGLIAVPLS 90 (578)
T ss_pred HhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccHHHHHHHHHHcCceEEecC
Confidence 36899999999754210 11223589999999999999999998833799999999999999999999999999999999
Q ss_pred C---CCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcC---C-CceEEEcCCCCCCCCCCCCCcccHHHHhc
Q 005501 265 D---SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA---P-LKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (693)
Q Consensus 265 p---~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (693)
+ ..+.+++.+++++++++++++++.... .+....... . ..++.++. . ++..
T Consensus 91 ~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------------~---~~~~ 148 (578)
T PRK05850 91 VPQGGAHDERVSAVLRDTSPSVVLTTSAVVD------DVTEYVAPQPGQSAPPVIEVDL-------------L---DLDS 148 (578)
T ss_pred CCCccchHHHHHHHHHhcCCCEEEEcHHHHH------HHHHHHhhcccccccceEeecc-------------c---cccc
Confidence 7 457899999999999999999875321 111111100 0 01111110 0 0000
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchh-cC-----CCCCCEEEEeCCccccch
Q 005501 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-ID-----LKVGDVYCWPTNLGWVMG 411 (693)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~-~~-----~~~~d~~l~~~~~~~~~~ 411 (693)
.. ........++++++|+|||||||.||||+++|+++.+.+...... +. ...+++++++.|+.|+++
T Consensus 149 --~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g 221 (578)
T PRK05850 149 --PR-----GSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMG 221 (578)
T ss_pred --CC-----ccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCch
Confidence 00 001123456899999999999999999999999998766554332 22 356789999999999999
Q ss_pred h-HHHHHHHHcCCEEEEecCC---CChhhHHHHHHHcCCcEEeechHHH-HHHHhcC---cCCCCCCccccEEEeecCCC
Q 005501 412 P-VILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLV-KAWRNTN---CLEGLDWTKIRSFASTGETS 483 (693)
Q Consensus 412 ~-~~~~~~L~~G~~lvi~~~~---~~~~~~~~~i~~~~vt~l~~~P~~l-~~l~~~~---~~~~~~l~~lr~v~~gGe~l 483 (693)
+ ..++.+++.|+++++.+.. .++..+++++++++++++ .+|+++ ..+.... .....+++++|.+++||+++
T Consensus 222 ~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~ 300 (578)
T PRK05850 222 LVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERV 300 (578)
T ss_pred hHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCC
Confidence 7 5688999999999998642 267889999999999865 555554 3333211 11234578999999999999
Q ss_pred CcchHHHHHhhCC-----CCceecccccccccceeccCCcCCC------------------------CccCccCCCCCCc
Q 005501 484 NVDDDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP------------------------QAFGAFSTATMTA 534 (693)
Q Consensus 484 ~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~------------------------~~~~~iG~p~~~~ 534 (693)
++.+.+++.+.++ +..+++.||+||++..+.......+ ....++|.|. +.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~ 379 (578)
T PRK05850 301 HPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SP 379 (578)
T ss_pred CHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CC
Confidence 9999888877652 3468999999998754333211100 0012345554 57
Q ss_pred eEEEECC-CCCCCCCCCCceeeEEE-----ecccCCCcccccccccccccccc---cccC--CCceeeeecceEEEecCC
Q 005501 535 GLVILDE-CGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRG---MPMY--KGMCLRRHGDIIKRTVGG 603 (693)
Q Consensus 535 ~~~ild~-~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f~~---~p~~--~g~~~yrTGDl~~~~~dG 603 (693)
+++|+|+ +++++|.|+ .|||++ +.||++ +++.|++.|.. +|.. .+.+||+|||+|+++ ||
T Consensus 380 ~~~ivd~~~~~~~~~g~--~Gel~v~g~~~~~gY~~------~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G 450 (578)
T PRK05850 380 TVRIVDPDTCIECPAGT--VGEIWVHGDNVAAGYWQ------KPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EG 450 (578)
T ss_pred EEEEEcCCCCcCCCCCC--EEEEEEecCcccccccC------ChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CC
Confidence 8999995 578999998 499999 457776 56678888853 2211 123599999999997 99
Q ss_pred cEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecCCCCCCh------HHHHHHH
Q 005501 604 YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQP------DKLKMIF 677 (693)
Q Consensus 604 ~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~------~~l~~~l 677 (693)
+|+|+||+||+||++|++|+|.|||++|. +||++ +++|++++++ .+ +.++|+|+++++...+. ..+++++
T Consensus 451 ~l~~~GR~~d~i~~~G~~i~p~eIE~~l~-~~~~~-~~~v~~v~~~-~~-~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v 526 (578)
T PRK05850 451 ELFIVGRIKDLLIVDGRNHYPDDIEATIQ-EITGG-RVAAISVPDD-GT-EKLVAIIELKKRGDSDEEAMDRLRTVKREV 526 (578)
T ss_pred EEEEEcccccEEEECCeecCHHHHHHHHH-HhcCC-cEEEEEecCC-Cc-eEEEEEEEeccccCcchhhhhhHHHHHHHH
Confidence 99999999999999999999999999996 89985 5888888876 55 89999999887643332 3566666
Q ss_pred HHHHHh
Q 005501 678 SKAIQS 683 (693)
Q Consensus 678 ~~~L~~ 683 (693)
...|+.
T Consensus 527 ~~~l~~ 532 (578)
T PRK05850 527 TSAISK 532 (578)
T ss_pred HHHHHH
Confidence 665654
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=455.97 Aligned_cols=446 Identities=18% Similarity=0.161 Sum_probs=349.5
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++.+|+.+++-......-.+++..+||+|..+++.+++..|+.. +++++.|||+.-|++||+++.+||...|++.|||.
T Consensus 85 ~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis~~a~~~~~~v~VplY 164 (691)
T KOG1256|consen 85 VEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIISEMACYAYSLVNVPLY 164 (691)
T ss_pred hhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHhHHHHHhcCCEEeecc
Confidence 47899999997665321246788999999999999999999998 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhc-----CCCc--eEEEcCCCCC---CCCCCCCCcccHHH
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA-----APLK--AIVLPAIGND---VGIPLREQDLSWKD 334 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~ 334 (693)
...+++.+.++++++...+++++++. .+..+++. .+.. ++.+...... ..........+|++
T Consensus 165 dTlg~ea~~~Ii~~~e~~iv~vd~~~--------k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e 236 (691)
T KOG1256|consen 165 DTLGAEAVHYIINHAEISIVFVDNAK--------KAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWDE 236 (691)
T ss_pred cCCCHHHHHHHHHhcceeEEEEeCHH--------HHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHHH
Confidence 99999999999999999999999641 22233331 3322 2223222211 11112234678999
Q ss_pred HhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHh---ch---hcCCCCCCEEEEeCCccc
Q 005501 335 FLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WA---HIDLKVGDVYCWPTNLGW 408 (693)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~---~~---~~~~~~~d~~l~~~~~~~ 408 (693)
+...+... ..... .+..|+|.|.|+|||||||.|||||+||+|++..+... .. .......|++++++|++|
T Consensus 237 ~~~lG~~~--~~~~~-~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~lSyLPLAH 313 (691)
T KOG1256|consen 237 FEELGKKN--QRKPR-VPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYLSYLPLAH 313 (691)
T ss_pred HHhhcccc--cCCCC-CCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEEEeCcHHH
Confidence 99887641 11122 46688999999999999999999999999998755421 11 112334699999999999
Q ss_pred cchhHHHHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcC-------------------------
Q 005501 409 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN------------------------- 463 (693)
Q Consensus 409 ~~~~~~~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~------------------------- 463 (693)
++.-..-...+..|+++.++.+ |+..+.+.|++.++|.+..+|.+|+.+.+..
T Consensus 314 i~er~~~~~~~~~G~~IgF~~g--D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~ 391 (691)
T KOG1256|consen 314 IFERVVELYTFYIGAKIGFARG--DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEH 391 (691)
T ss_pred HHHHHHHHhHhhcccEEEEecC--ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 9998555556689999999874 5577888899999999999999988774320
Q ss_pred -cCCCCCC-------------------ccccEEEeecCCCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCc
Q 005501 464 -CLEGLDW-------------------TKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA 523 (693)
Q Consensus 464 -~~~~~~l-------------------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 523 (693)
....... ..+|.+++|++|+++++...++..+ +++++++||+|||++..+...+... .
T Consensus 392 ~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts~g~~~~~~~d~-~ 469 (691)
T KOG1256|consen 392 RLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETSAGTTLTLPGDN-V 469 (691)
T ss_pred HhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhc-CceeeecccccccCCceEeccCCCC-C
Confidence 0000000 3688899999999999999888765 6999999999999965555555444 7
Q ss_pred cCccCCCCCCceEEEEC-CCCCCCCCCCCceeeEEE-----ecccCCCcccccccccccccccccccCCCceeeeecceE
Q 005501 524 FGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDII 597 (693)
Q Consensus 524 ~~~iG~p~~~~~~~ild-~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~ 597 (693)
.+++|.|+|+++++++| ++.+.-+.|.. ||||| ..||+. +++.|++.|..+. |++|||+|
T Consensus 470 lgsvG~p~p~~~vKL~dvpe~ny~a~~~~--GEIcirG~~Vf~GYyK------~p~~T~e~ideDG------WLhTGDiG 535 (691)
T KOG1256|consen 470 LGSVGPPVPGNEVKLVDVPEMNYDADGSK--GEICVRGPNVFMGYYK------DPEKTAEAIDEDG------WLHTGDIG 535 (691)
T ss_pred CCCcCCcccCceEEEechHHhCcCcCCCc--ceEEEecchhceeccC------ChHHHhhhhcccc------ccccccce
Confidence 89999999999999998 44444555553 99998 567776 6779999997544 99999999
Q ss_pred EEecCCcEEEEeecCCcccc-CCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecCC
Q 005501 598 KRTVGGYIIVQGRADDTMNL-GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG 665 (693)
Q Consensus 598 ~~~~dG~l~~~GR~dd~ik~-~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~ 665 (693)
+|+++|.|.++||+++.+|. .|+.|.|..||++.. ..+-|.+.+|.+... +..|+|.|++++.
T Consensus 536 ~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~-~~~~V~qi~V~g~s~----~~~LvaiVvpd~e 599 (691)
T KOG1256|consen 536 EWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYK-RSLPVQQIFVLGDSL----RSFLVAIVVPDPE 599 (691)
T ss_pred eECCCccEEEEecccceEEcCCCCccChHHHHHHHh-cCCceEEEEEECCcc----hhcEEEEEecChh
Confidence 99999999999999999995 599999999999995 778899999887432 2789999999764
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-54 Score=467.66 Aligned_cols=390 Identities=25% Similarity=0.290 Sum_probs=302.5
Q ss_pred cCCCCCCcEEEEE-ecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 005501 185 HRRKEDNTVAIVW-REDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (693)
Q Consensus 185 ~a~~~pd~~Al~~-~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vp 262 (693)
+|+++||++|+++ ... ++||+||.++++++|..|+++ +++|++|+|+++|++++++++|||+++|++++|
T Consensus 4 ~a~~~pd~~a~~~~~~~--------~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~ 75 (417)
T PF00501_consen 4 QAQRYPDRIALIDDEGR--------SLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVP 75 (417)
T ss_dssp HHHHSTTSEEEEETTTE--------EEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEE
T ss_pred HHhhCCCceEEEECCCE--------EEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccccc
Confidence 5688999999999 444 999999999999999999988 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHh---hcC--CCceEEEcCCCCCCCCCCCCCcccHHHHhc
Q 005501 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVL---GAA--PLKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (693)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (693)
++|.++.+++.++++.+++++||+ .+.. +... ...+. ... ...++.++..... ....+..
T Consensus 76 l~~~~~~~~~~~~l~~~~~~~ii~-~~~~---d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 140 (417)
T PF00501_consen 76 LDPSLSEDELRHILRQSGPKVIIT-SEAV---DSEP-LKKLKSIFKQEDPSSSIIILDRDDLP----------KKEALKS 140 (417)
T ss_dssp EETTSSHHHHHHHHHHHTESEEEE-CHHH---SCHH-HHHHHHHHTTSTTTEEEEEESHSSCT----------TCHHHHH
T ss_pred cccccccccccccccccceeEEEE-eccc---cccc-cccchhhhcccccccccccccccccc----------ccccccc
Confidence 999999999999999999999997 1000 0011 11121 111 1123333221110 0011110
Q ss_pred ccCCCCCCCCCCCcc-CCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhc--hhcCCCCCCEEEEeCCccccchh-H
Q 005501 338 SVDYHPRPNYYSPVY-NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW--AHIDLKVGDVYCWPTNLGWVMGP-V 413 (693)
Q Consensus 338 ~~~~~~~~~~~~~~~-~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~-~ 413 (693)
.... ...... ..++++++++|||||||.||+|.++|+++.+.+.... ..++++ |++++++|++|.+++ .
T Consensus 141 ~~~~-----~~~~~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~ 213 (417)
T PF00501_consen 141 ASLS-----DEPQSPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIFGLIS 213 (417)
T ss_dssp HHHC-----HCSHSTTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHHHHHH
T ss_pred cccc-----cccccCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccccccc
Confidence 0000 000000 0569999999999999999999999999988877653 223333 699999999999999 8
Q ss_pred HHHHHHHcCCEEEEecCCCC--hhhHHHHHHHcCCcEEeechHHHHHHHhcCcC----CCCCCccccEEEeecCCCCcch
Q 005501 414 ILFSSFLNGATLALYQGSPL--ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL----EGLDWTKIRSFASTGETSNVDD 487 (693)
Q Consensus 414 ~~~~~L~~G~~lvi~~~~~~--~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~----~~~~l~~lr~v~~gGe~l~~~~ 487 (693)
.++.++..|+++++++.... +..+++.++++++|++.++|+++..|++.... ...++++||.+++||+++++++
T Consensus 214 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~ 293 (417)
T PF00501_consen 214 ALLAALFSGATLVLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDL 293 (417)
T ss_dssp HHHHHHHCTSEEEEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHH
T ss_pred cccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhh
Confidence 89999999999999985432 46789999999999999999999999874222 2346889999999999999999
Q ss_pred HHHHHhhCCCCceecccccccccceeccCC-cCCCCccCccCCCCCCceEEEECCC-CCCCCCCCCceeeEEE-----ec
Q 005501 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGS-LLQPQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGL-----FP 560 (693)
Q Consensus 488 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~-~~~~~~~~~iG~p~~~~~~~ild~~-~~~~p~G~~giGel~v-----~~ 560 (693)
.+++.+.++..++++.||+||++..++... .......+++|+|++|++++|+|++ +++++.|+. |||++ ..
T Consensus 294 ~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~--Gei~i~~~~~~~ 371 (417)
T PF00501_consen 294 LRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEP--GEIVIRGPNVFS 371 (417)
T ss_dssp HHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSE--EEEEEESTTSBS
T ss_pred ccccccccccccceecccccccceeeeccccccccccccccccccccccccccccccccccccccc--ccccccCCccce
Confidence 999998876568999999999998765442 2222355789999999999999987 999999994 99999 35
Q ss_pred ccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccC
Q 005501 561 LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 618 (693)
Q Consensus 561 gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~ 618 (693)
||++ +++.+++.|.. ++||+|||+|++|+||+|+++||.||+||+|
T Consensus 372 gy~~------~~~~~~~~~~~------~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 372 GYYN------DPELTAEAFID------DGWYRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp EETT------BHHHHHHHEET------TSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred eeec------ccccccccccc------ccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 6665 44577777763 2399999999999999999999999999986
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-52 Score=467.82 Aligned_cols=450 Identities=18% Similarity=0.148 Sum_probs=339.9
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
|...|+.+|+...+.. +.+||.||+++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 12 ~~~~~~~~~~~~~~~~------~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v~~~l~ 85 (545)
T PRK07768 12 ARTSPRGMVTGEPDAP------VRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASLTMLH 85 (545)
T ss_pred hhCCCcceEEecCCCc------eEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCccccccC
Confidence 3578999999765542 4899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHH-------HHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhc
Q 005501 265 DSFAAREI-------ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLS 337 (693)
Q Consensus 265 p~~~~~~l-------~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (693)
+..+.+++ ..+++.++++++++++...... ..+ .... ...+.++++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~-~~~~------------------~~~~~~~~l~~ 140 (545)
T PRK07768 86 QPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAA------PVL-EEKG------------------IRVLTVADLLA 140 (545)
T ss_pred CCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhh------hhh-cccC------------------Cceeehhhhcc
Confidence 98887655 4467778999999976432100 000 0000 11233444443
Q ss_pred ccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCC-CEEEEeCCccccchhH-HH
Q 005501 338 SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG-DVYCWPTNLGWVMGPV-IL 415 (693)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~-d~~l~~~~~~~~~~~~-~~ 415 (693)
.... ......++++++|+|||||||+||||+++|+++.+.+......+++.++ |++++.+|++|++++. .+
T Consensus 141 ~~~~-------~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 213 (545)
T PRK07768 141 ADPI-------DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFL 213 (545)
T ss_pred cCCC-------CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhcCCCCCCceeEEeCCCccchHHHHHH
Confidence 2111 1223457999999999999999999999999998888877777888876 8999999999999985 46
Q ss_pred HHHHHcCCEEEEecCC---CChhhHHHHHHHcCCcEEeechHHHHHHHhcC----cCCCCCCccccEEEeecCCCCcchH
Q 005501 416 FSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN----CLEGLDWTKIRSFASTGETSNVDDD 488 (693)
Q Consensus 416 ~~~L~~G~~lvi~~~~---~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~----~~~~~~l~~lr~v~~gGe~l~~~~~ 488 (693)
+.++..|+++++.+.. .++..++++++++++|++..+|.++..+.... .....+++++|.+++||+++++...
T Consensus 214 ~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~ 293 (545)
T PRK07768 214 TVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADV 293 (545)
T ss_pred HHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHH
Confidence 6789999999888642 25678889999999999988888777665421 1124567899999999999999998
Q ss_pred HHHHhh---C--CCCceecccccccccceeccCCcCC-------------------------CCccCccCCCCCCceEEE
Q 005501 489 LWLSSK---A--WYNAIIESCGGTELSSAYIQGSLLQ-------------------------PQAFGAFSTATMTAGLVI 538 (693)
Q Consensus 489 ~~~~~~---~--~~~~l~n~YG~TE~~~~~~~~~~~~-------------------------~~~~~~iG~p~~~~~~~i 538 (693)
+++.+. + +...+++.||+||++..++...... ....+++|+|+++++++|
T Consensus 294 ~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i 373 (545)
T PRK07768 294 EDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRV 373 (545)
T ss_pred HHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEE
Confidence 887653 2 2235999999999986543322110 112357999999999999
Q ss_pred ECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCC
Q 005501 539 LDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADD 613 (693)
Q Consensus 539 ld~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd 613 (693)
+|+++++++.|+ +|||++ .+||++. ..+.. ... +..||+|||+|++++||+++|+||+||
T Consensus 374 ~~~~~~~~~~g~--~Gel~v~~~~~~~gy~~~-------~~~~~----~~~--~~g~~~TGDl~~~~~~g~l~~~GR~~d 438 (545)
T PRK07768 374 VDEDGQVLPPRG--VGVIELRGESVTPGYLTM-------DGFIP----AQD--ADGWLDTGDLGYLTEEGEVVVCGRVKD 438 (545)
T ss_pred ECCCCCCCCCCC--EEEEEEccCcccccccCC-------CCCcc----ccc--CCCeeeccceEEEecCCEEEEEccccc
Confidence 999999999998 499998 3455542 11111 111 234999999999999999999999999
Q ss_pred ccccCCeeeehHHHHHHHhccCcccceeEEEeecC--CCCCceEEEEEEEecCCCC-CChHHHHHHHHHHHHhh--cCCC
Q 005501 614 TMNLGGIKTSSVEIERVCDQADESILETAAISVSP--AGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSK--LNPL 688 (693)
Q Consensus 614 ~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~--~~~g~~~l~a~vv~~~~~~-~~~~~l~~~l~~~L~~~--m~P~ 688 (693)
+||++|++|++.|||++|. .||+|.+++|+++.. ...+ +.+++++...++.. ....++.+++++.++++ ..|.
T Consensus 439 ~i~~~G~~v~~~eiE~~l~-~~~~v~~~~vv~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~ 516 (545)
T PRK07768 439 VIIMAGRNIYPTDIERAAA-RVEGVRPGNAVAVRLDAGHSR-EGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVRPR 516 (545)
T ss_pred eEEECCEecCHHHHHHHHH-hCcccccceEEEEEecCCCCc-eEEEEEEEecccccHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999995 899999988877653 3333 45555555443211 12245778888888776 4565
Q ss_pred ce
Q 005501 689 FK 690 (693)
Q Consensus 689 ~~ 690 (693)
.+
T Consensus 517 ~v 518 (545)
T PRK07768 517 NV 518 (545)
T ss_pred EE
Confidence 44
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-52 Score=453.13 Aligned_cols=393 Identities=21% Similarity=0.206 Sum_probs=325.9
Q ss_pred cHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeec
Q 005501 211 TYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 288 (693)
Q Consensus 211 TY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il~~~ 288 (693)
||.||.+.++++|++|.+ . +++||+|+++++|+++++++++||+++|++++|+++.++.+++..+++++++++++++.
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999999 7 99999999999999999999999999999999999999999999999999999999987
Q ss_pred ceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCC
Q 005501 289 FILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTT 368 (693)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGST 368 (693)
........ .......+.. .+......... .........++++++++||||||
T Consensus 81 ~~~~~~~~----------~~~~~~~~~~--------------~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~TSGTt 132 (408)
T TIGR01733 81 ALASRLAG----------LVLPIILVDP--------------LELAALDDAPA----PPPPDAPSGPDDLAYVIYTSGST 132 (408)
T ss_pred chhhhccc----------cCCceEEech--------------hhhhhcccccc----cccccCCCCCCCcEEEEEcCCCC
Confidence 54321111 1111111110 00011110000 00011113568999999999999
Q ss_pred CCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHcCCEEEEecCCCC--hhhHHHHHHHcCC
Q 005501 369 GEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL--ERSFGKFVQDAGV 446 (693)
Q Consensus 369 G~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvi~~~~~~--~~~~~~~i~~~~v 446 (693)
|.||+|.++|+++.+........+.+.++|+++...|++|+++++.++.++..|+++++++.... +..+.+.++++++
T Consensus 133 G~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (408)
T TIGR01733 133 GRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPV 212 (408)
T ss_pred CCCCEEEeccHHHHHHHHHHHHhcCCCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCc
Confidence 99999999999999988888888899999999999999999999999999999999999876443 6789999999999
Q ss_pred cEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceecccccccccceeccCCc--CCCC--
Q 005501 447 TVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL--LQPQ-- 522 (693)
Q Consensus 447 t~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~--~~~~-- 522 (693)
|.+.++|++++.|.+... ..+++||.+++||+++++++.+++.+.++++.+++.||+||++..+..... ....
T Consensus 213 t~l~~~p~~~~~l~~~~~---~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~ 289 (408)
T TIGR01733 213 TVLNLTPSLLALLAAALP---PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRE 289 (408)
T ss_pred eEEEeCHHHHHHHHHhhh---hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCc
Confidence 999999999999988753 457899999999999999999999988876899999999999876542221 1111
Q ss_pred ccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccccccccccccccCC--Cceeeeecc
Q 005501 523 AFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYK--GMCLRRHGD 595 (693)
Q Consensus 523 ~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~--g~~~yrTGD 595 (693)
...++|+|+++++++|+|+++++++.|+. |||++ ..||++ +++.|...|..+++.. |.+||+|||
T Consensus 290 ~~~~~G~~~~~~~~~i~~~~~~~~~~g~~--Gel~v~~~~~~~gy~~------~~~~~~~~~~~~~~~~~~~~~~~~TGD 361 (408)
T TIGR01733 290 SPVPIGRPLANTRLYVLDDDLRPVPVGVV--GELYIGGPGVARGYLN------RPELTAERFVPDPFAGGDGARLYRTGD 361 (408)
T ss_pred cccccCcccCCceEEEECCCCCCCCCCCc--eEEEecCccccccccC------ChhhhhcceeeCCCCCCCCceEEECCc
Confidence 26789999999999999999999999985 99998 456766 5567777887776643 445999999
Q ss_pred eEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEE
Q 005501 596 IIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAA 643 (693)
Q Consensus 596 l~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~V 643 (693)
+|++++||++++.||.||+||++|++|+|.|||++|. .||+|.+|+|
T Consensus 362 l~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~-~~~~v~~~~v 408 (408)
T TIGR01733 362 LVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALL-RHPGVREAVV 408 (408)
T ss_pred eEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHh-cCcchhhhcC
Confidence 9999999999999999999999999999999999996 9999999875
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-51 Score=418.32 Aligned_cols=474 Identities=21% Similarity=0.196 Sum_probs=371.3
Q ss_pred ccCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 005501 184 NHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (693)
Q Consensus 184 ~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vp 262 (693)
.||+++|+++|+++.+.. +++||+|++++++++|+.|..+ ++.||.|+++|+|+++++...|+.+|+|++...
T Consensus 85 ~~vrr~p~k~aii~~~~~------~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKlGv~tA~ 158 (649)
T KOG1179|consen 85 SQVRRQPDKPAIIYEGPF------QSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKLGVITAF 158 (649)
T ss_pred HHHHhCCCccEEEEeCCC------ceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhhCceeee
Confidence 366899999999998852 3999999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCC-CceEEEcCCCCCCCCCCCCCcccHHHHhcccCC
Q 005501 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY 341 (693)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (693)
||++...+.|.+.++-++++.+|++.++.. .+.++.+... ..+.++..... ..+.+..++...++....
T Consensus 159 iNtNlR~~~LlHsi~~s~aralv~~~el~~------~~~e~~~~l~~~~i~~~~~~~~----~~~~g~~~L~~~l~~~~~ 228 (649)
T KOG1179|consen 159 INTNLRGEPLLHSITVSGARALVVGPELLN------ALEEILPLLIKNGIHVFSLGPT----SVPDGIESLLAKLSAAPK 228 (649)
T ss_pred eccccccchhhhhhhhcCceEEEECHHHHH------HHHhcchhhhhccceEEecCCC----CCCchHHHHHHhhccccc
Confidence 999999999999999999999999986431 1111111111 11222221111 011222233333332222
Q ss_pred CCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchh-HHHHHHHH
Q 005501 342 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFL 420 (693)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~ 420 (693)
.+.+ ..........++++.||||||||.||..+++|.-+..........++++++|+++..+|+.|.++. ..+..+|.
T Consensus 229 ~~vp-~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~ 307 (649)
T KOG1179|consen 229 HPVP-VSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLL 307 (649)
T ss_pred CCCC-cccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHh
Confidence 1111 022334566789999999999999999999999887776656678999999999999999999876 77999999
Q ss_pred cCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCce
Q 005501 421 NGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAI 500 (693)
Q Consensus 421 ~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 500 (693)
.|+|+|+-. .++...||+.+.+++||++.-.--+.+.|++.+......-..+|..+-- -+.++.++.|.++|...+|
T Consensus 308 ~GaT~Vlrk-KFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~GN--GLR~diW~~Fv~RFg~~~I 384 (649)
T KOG1179|consen 308 HGATVVLRK-KFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAYGN--GLRPDIWQQFVKRFGIIKI 384 (649)
T ss_pred cCceEEEec-ccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEecC--CCCchHHHHHHHHcCCCeE
Confidence 999999976 6788999999999999999999999999999877655555778877644 4789999999999977789
Q ss_pred ecccccccccceeccCCcCCCCccCccCC------CCCCceEEE---------ECCCCC--CCCCCCCceeeEEE-----
Q 005501 501 IESCGGTELSSAYIQGSLLQPQAFGAFST------ATMTAGLVI---------LDECGV--PYPDDQPCVGEVGL----- 558 (693)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~------p~~~~~~~i---------ld~~~~--~~p~G~~giGel~v----- 558 (693)
.+.||+||..+..+.. ....+.+|+ -+--+++-= .|++|- +|++|++ |.+.-
T Consensus 385 gE~YgaTEgn~~~~N~----d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEp--GlLv~~i~~k 458 (649)
T KOG1179|consen 385 GEFYGATEGNSNLVNY----DGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEP--GLLVGKIVQK 458 (649)
T ss_pred EEEeccccCcceeeee----cCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCC--ceEEEEeccC
Confidence 9999999988644322 122233332 111122222 333332 5788997 54331
Q ss_pred -----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhc
Q 005501 559 -----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633 (693)
Q Consensus 559 -----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~ 633 (693)
..||.+ +.+.|+.+...|-|..|+-||.|||+-.+|+.|+|||.+|..|.+.-.|++|+..|||.+| +
T Consensus 459 ~P~~~F~GY~g------~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l-~ 531 (649)
T KOG1179|consen 459 NPLRSFLGYAG------PKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVL-S 531 (649)
T ss_pred CchhhhccccC------chhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHH-h
Confidence 236665 3668888888888999999999999999999999999999999999999999999999999 5
Q ss_pred cCcccceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCCCce
Q 005501 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFK 690 (693)
Q Consensus 634 ~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P~~~ 690 (693)
...+++|+.|.|+.-+...+..=.|-|+.+++.+.+.+.+-+++++.||+|-.|.++
T Consensus 532 ~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d~~~l~~~l~~~LP~YA~P~Fl 588 (649)
T KOG1179|consen 532 ALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEKDLEKLYQHLRENLPSYARPRFL 588 (649)
T ss_pred hhccccceeEEEEecCCccCccceEEEEecCcccchHHHHHHHHHhhCccccchHHH
Confidence 999999999999877654336667777888888899999999999999999999875
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-50 Score=410.27 Aligned_cols=434 Identities=18% Similarity=0.179 Sum_probs=333.9
Q ss_pred cceeecHHHHHHHHHHHHHHHHhh-cCCCCE-EEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeE
Q 005501 206 AVNLMTYKELREQVMLVANALDTM-FSKGDA-IAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKG 283 (693)
Q Consensus 206 ~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~-V~i~~~~s~~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~ 283 (693)
++..+||.|+.+++.++|+.|.+. +++++. |+|+++.+.+|.++.+||++.+...|.+...+..+.|.+-|++++++.
T Consensus 86 ~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~ 165 (678)
T KOG1180|consen 86 DYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTA 165 (678)
T ss_pred ceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceE
Confidence 567999999999999999999999 986666 999999999999999999999999999999999999999999999999
Q ss_pred EEeecceeeCCccccchhhHhhcCCCc--eEEEcCCCCC---CCCC----CCCCcccHHHHhcccCCCCCCCCCCCccCC
Q 005501 284 IFTQDFILRGGRKFPLYSKVLGAAPLK--AIVLPAIGND---VGIP----LREQDLSWKDFLSSVDYHPRPNYYSPVYNP 354 (693)
Q Consensus 284 il~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (693)
|||+.... +.+....+..+.. ++.++..+.. .+.. .+...++++++...+.... .++.+..
T Consensus 166 i~T~~~LL------~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~----~~~~~P~ 235 (678)
T KOG1180|consen 166 IFTDSELL------PKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENE----IPPHPPK 235 (678)
T ss_pred EEeCHHHH------HHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCC----CCCCCCC
Confidence 99998643 3333333333332 3333321111 1111 1234577888888776521 2333447
Q ss_pred CCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhc-CCCCCCEEEEeCCccccchhHHHHHHHHcCCEEEEecCCC-
Q 005501 355 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSP- 432 (693)
Q Consensus 355 ~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvi~~~~~- 432 (693)
|+|+|+|||||||||.|||||++|+|+++.+....... .+.+.|+++.++|++|.+-+..=+.++..|+++=-.+..+
T Consensus 236 p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TL 315 (678)
T KOG1180|consen 236 PSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTL 315 (678)
T ss_pred CCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCccee
Confidence 79999999999999999999999999998887776654 6899999999999999999855558899998875544322
Q ss_pred -Ch-----hhHHHHHHHcCCcEEeechHHHHHHHhcCc-------------------------C-CCC------------
Q 005501 433 -LE-----RSFGKFVQDAGVTVLGTVPSLVKAWRNTNC-------------------------L-EGL------------ 468 (693)
Q Consensus 433 -~~-----~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~-------------------------~-~~~------------ 468 (693)
|. ..---.+...++|++.++|..+..+.+... . ...
T Consensus 316 tdts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkK 395 (678)
T KOG1180|consen 316 TDTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKK 395 (678)
T ss_pred cccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHH
Confidence 11 111224567799999999998876633200 0 000
Q ss_pred ----CCccccEEEeecCCCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCccCccCCCCCCceEEEEC-CCC
Q 005501 469 ----DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECG 543 (693)
Q Consensus 469 ----~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild-~~~ 543 (693)
--.+||.+++||++|+++..+.+.-.+ .+++.++||.||+++..+...+.+ ...+.+|.|++-++++++| ++|
T Consensus 396 Ir~~lGG~lR~~LsGGapLS~dtQrF~nic~-C~Pv~qGYGLTEtca~~tv~e~~d-~~~g~vG~pl~c~eiKLvdw~Eg 473 (678)
T KOG1180|consen 396 IRALLGGNLRYILSGGAPLSPDTQRFMNICF-CCPVLQGYGLTETCAAATVLEPED-FSTGRVGAPLPCCEIKLVDWEEG 473 (678)
T ss_pred HHHHhCCceEEEEeCCCCCCHHHHHHHHHhc-cccccccccccchhcccEecChhh-cccccccCCccceEEEEEEhhhc
Confidence 013799999999999999877765443 569999999999987655544433 4456899999999999999 333
Q ss_pred CCCCCCCCceeeEEE-----ecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEeecCCccc-c
Q 005501 544 VPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN-L 617 (693)
Q Consensus 544 ~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik-~ 617 (693)
.-.+.+.|--|||+| .+||++ |++.|++.|.. .+|.|||+|||+|+|.+||.|.+++|++|.|| .
T Consensus 474 GY~~~~~PPrGEI~i~G~~vt~gY~k------n~ekT~e~ft~---~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq 544 (678)
T KOG1180|consen 474 GYFAKNKPPRGEILIGGPNVTMGYYK------NEEKTKEDFTV---EDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQ 544 (678)
T ss_pred CccCCCCCCCceEEecCCccChhhhC------Chhhhhhhcee---cCCcEEEeccccceecCCCcEEEeechhhhhhhc
Confidence 322222211378887 678887 77799999986 46899999999999999999999999999999 5
Q ss_pred CCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecCC
Q 005501 618 GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG 665 (693)
Q Consensus 618 ~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~ 665 (693)
+|+.|+++-||+++ +..|-|...+|.+-. .. ..+||+||++++
T Consensus 545 ~GEYIsL~KvEa~l-~s~p~V~NICvyAd~--~~--s~~VaiVVPn~~ 587 (678)
T KOG1180|consen 545 NGEYISLGKVEAAL-RSSPYVDNICVYADS--NK--SKPVAIVVPNQK 587 (678)
T ss_pred ccceeehHHHHHHH-hcCcchhheEEeccc--cc--ceeEEEEcCCch
Confidence 79999999999999 499999999998743 22 689999999864
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=401.74 Aligned_cols=414 Identities=11% Similarity=0.041 Sum_probs=297.7
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA 264 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~ 264 (693)
++++|+++|+.+... .+.++.+||+|+.++++++|++|+++ +++||+|+|+++|+++|+++.+||+++|++.||++
T Consensus 437 a~~~pd~~al~~~~~---~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~GaV~VPly 513 (1452)
T PTZ00297 437 VTRHSTFRCLGQTSE---SGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGFTTLPLV 513 (1452)
T ss_pred HHHCCCCeEEEEecc---CCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeCC
Confidence 478899999964311 12345899999999999999999999 99999999999999999999999999999999997
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCC--CCC--CCCCcccHHHHhcccC
Q 005501 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDV--GIP--LREQDLSWKDFLSSVD 340 (693)
Q Consensus 265 p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~ 340 (693)
+ +.+++.+++++++++++|++.... +.+..+....-..+++++...... ... ......+|+++...+.
T Consensus 514 ~--t~~eL~yIL~~S~akvVfv~~~~l------~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G~ 585 (1452)
T PTZ00297 514 G--KGSTMRTLIDEHKIKVVFADRNSV------AAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGR 585 (1452)
T ss_pred C--CHHHHHHHHHhcCCcEEEEchhHH------HHHHhhcccCCcEEEEECCCcccccccccccCCcceeeHHHHHhcCc
Confidence 5 467999999999999999986432 111111111122344443211000 000 0112456888887653
Q ss_pred CCCCCCCCCCccCCCCCeEEEEe---ccCCCCCcceEEecchhHHHHHHHhchhc---CCCCCCEEEEeCCccccchhHH
Q 005501 341 YHPRPNYYSPVYNPVDAVVNILF---SSGTTGEPKAIPWTQLSSIRCTAEGWAHI---DLKVGDVYCWPTNLGWVMGPVI 414 (693)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~a~il~---TSGSTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~~~~~~~~~~~ 414 (693)
... . .......++|++.|+| ||||||.||||++||+|++..+....... ...++|+++.++|++|.++...
T Consensus 586 ~~~--~-~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~~ 662 (1452)
T PTZ00297 586 LCP--V-PLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRVF 662 (1452)
T ss_pred ccC--c-cccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHHHHHH
Confidence 211 1 1122346789999996 99999999999999999988887654322 4567899999999999998766
Q ss_pred HHHHHHcCCEEEEecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCc----C----------------------CCC
Q 005501 415 LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC----L----------------------EGL 468 (693)
Q Consensus 415 ~~~~L~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~----~----------------------~~~ 468 (693)
.+.++..|+++.. .+++.+++.|+++++|++.++|.++..+..... . ...
T Consensus 663 ~~~~l~~G~~I~~----~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~~ 738 (1452)
T PTZ00297 663 VLGLFAHGSAVAT----VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRR 738 (1452)
T ss_pred HHHHHHcCCEEEe----CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6788999999864 356899999999999999999999987643210 0 000
Q ss_pred CC----------------ccccEEEeecC--CCCcchHHHHHhhCCCCceecccccccccceeccCCcCCCCccCccCCC
Q 005501 469 DW----------------TKIRSFASTGE--TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA 530 (693)
Q Consensus 469 ~l----------------~~lr~v~~gGe--~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p 530 (693)
.. ..+|.+++||. +++. .... +.+++.+||.||+.. ...+.. . ...|+|
T Consensus 739 ~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~-----~l~~--~i~i~~g~glTE~~~---~~~~~~-~--~~~G~P 805 (1452)
T PTZ00297 739 DSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSF-----SLLE--HISVCYVPCLREVFF---LPSEGV-F--CVDGTP 805 (1452)
T ss_pred CcHHHHHHHHHHHHHHhcCCeEEEEECCCccccCh-----HHhC--CceEEEecceEEeee---ecCCCC-c--ccCCee
Confidence 00 36888988873 3332 2222 467888999999532 222221 1 234999
Q ss_pred CCCceEEEECCCCCCCCCCCCceeeEEEecccCCCcccccccccccccccccccCCCceeeeecceEEEecCCcEEEEee
Q 005501 531 TMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGR 610 (693)
Q Consensus 531 ~~~~~~~ild~~~~~~p~G~~giGel~v~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR 610 (693)
+||++++|.|....--..+ .|||++. |.+ +++.|++.+ +.|++||+|.++||
T Consensus 806 lpgvEvKI~~~~E~~~~~~---~GEIlvr--~~k------dpe~T~e~~-----------------~gW~~dG~L~IidR 857 (1452)
T PTZ00297 806 APSLQVDLEPFDEPSDGAG---IGQLVLA--KKG------EPRRTLPIA-----------------AQWKRDRTLRLLGP 857 (1452)
T ss_pred cCceEEEEcccccccCCCC---CCeEEEE--ECC------ChHHHHHhh-----------------CcCccCCeEEEEec
Confidence 9999999987421101112 4999983 434 455665421 23557999999999
Q ss_pred cCCccc-cCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecC
Q 005501 611 ADDTMN-LGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 664 (693)
Q Consensus 611 ~dd~ik-~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~ 664 (693)
+||.|| .+|++|+|..||+.+ +++|.|.+++|+|... +.++|.|+++.
T Consensus 858 kKdlikls~GEyVaP~~IE~~l-~~sp~I~qi~V~Gd~~-----k~lvALVvpd~ 906 (1452)
T PTZ00297 858 PLGILLPVAYEYVIAAELERIF-SQSRYVNDIFLYADPS-----RPIIAIVSPNR 906 (1452)
T ss_pred cccceECCCCcEEcHHHHHHHH-hcCCCccEEEEEecCC-----CceEEEEEeCH
Confidence 999999 579999999999999 4999999999998432 45999998863
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=362.00 Aligned_cols=294 Identities=17% Similarity=0.149 Sum_probs=243.1
Q ss_pred CCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHHHHcCCEEEEe--cC
Q 005501 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY--QG 430 (693)
Q Consensus 353 ~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvi~--~~ 430 (693)
..+++++||+|||||||.||||+++|+++.+........+ ...++++...|+.|..++..++.+++.|++++++ ..
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~~~ 109 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL--GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDVSA 109 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc--CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCcCC
Confidence 3468999999999999999999999999988776654443 3567888999999999998888999999999884 34
Q ss_pred CCChhhHHHHHHHcC--CcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceeccccccc
Q 005501 431 SPLERSFGKFVQDAG--VTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE 508 (693)
Q Consensus 431 ~~~~~~~~~~i~~~~--vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE 508 (693)
..++..+++.+++++ +++...+|+.+..++.... ...+++++|.+++||+++++++.+++.+. +++++|.||+||
T Consensus 110 ~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-~~~~~~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~YG~TE 186 (358)
T PRK07824 110 GFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-ATAALAELDAVLVGGGPAPAPVLDAAAAA--GINVVRTYGMSE 186 (358)
T ss_pred CcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-ccCCcccceEEEECCCCCCHHHHHHHHhc--CCcEEecccCCc
Confidence 557889999999998 5667778988887766432 23457899999999999999998887753 689999999999
Q ss_pred ccceeccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEE-----ecccCCCcccccccccccccccccc
Q 005501 509 LSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMP 583 (693)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p 583 (693)
++..+ ...|+|++|++++|.| ||+++ ..||.+.+. . ..|..
T Consensus 187 ~~~~~-----------~~~G~~~~g~~v~i~~-------------Gei~v~g~~~~~gY~~~~~------~--~~~~~-- 232 (358)
T PRK07824 187 TSGGC-----------VYDGVPLDGVRVRVED-------------GRIALGGPTLAKGYRNPVD------P--DPFAE-- 232 (358)
T ss_pred cCCCc-----------CcCceeCCCCEEEecC-------------CEEEEecCccccccCCCcc------c--ccccC--
Confidence 87532 1358999999999843 45554 567766322 1 12221
Q ss_pred cCCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEec
Q 005501 584 MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLK 663 (693)
Q Consensus 584 ~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~ 663 (693)
+| ||+|||+|++ +||++++.||.||+||++|++|+|.|||++|. +||+|.+|+|++.+++..| +.++++++.+
T Consensus 233 --~g--~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~-~~~~V~~~~vv~~~~~~~g-~~~~a~v~~~ 305 (358)
T PRK07824 233 --PG--WFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALA-THPAVADCAVFGLPDDRLG-QRVVAAVVGD 305 (358)
T ss_pred --CC--ceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHH-hCCCcceEEEEecCCCCCc-eEEEEEEEeC
Confidence 22 9999999999 89999999999999999999999999999996 9999999999999988877 8999999988
Q ss_pred CCCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 664 KGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 664 ~~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
.+...+.++++++++++|+.|++|..++.
T Consensus 306 ~~~~~~~~~i~~~~~~~l~~~~~P~~i~~ 334 (358)
T PRK07824 306 GGPAPTLEALRAHVARTLDRTAAPRELHV 334 (358)
T ss_pred CCCCcCHHHHHHHHHhhCccccCCCEEEE
Confidence 76667889999999999999999988764
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=335.37 Aligned_cols=274 Identities=12% Similarity=0.082 Sum_probs=216.3
Q ss_pred CCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCC--CCEEEEeCCccccchh-HHHHHHHHcCCEEEEecCCC
Q 005501 356 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKV--GDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQGSP 432 (693)
Q Consensus 356 ~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~--~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvi~~~~~ 432 (693)
++.++++|||||||.||||+++|+++.+.+.+....++++. .|++++.+|++|..+. +.++.++..|+++++.+ ..
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~-~~ 173 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLA-AA 173 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecC-CC
Confidence 55799999999999999999999999888877767677644 4689999999998876 67788999999999876 35
Q ss_pred ChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceecccccccccce
Q 005501 433 LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSA 512 (693)
Q Consensus 433 ~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 512 (693)
++..+++.++. .|++.++|++++.|.+.. .+++++|. ++||+++++++.+.+.+. ....+++.||+||++++
T Consensus 174 ~~~~~l~~i~~--~t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i 245 (386)
T TIGR02372 174 PASGIMRHARP--GDLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGI 245 (386)
T ss_pred ChHHHHHhhcc--CCEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheecccccccc
Confidence 66777777764 389999999999997652 34677886 678999999999888765 22469999999999864
Q ss_pred eccCCcCCCCccCccCCCCCCceEEEECCCCCCCCCCCCceeeEEEecccCCCcccccccccccccccccccCCCceeee
Q 005501 513 YIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRR 592 (693)
Q Consensus 513 ~~~~~~~~~~~~~~iG~p~~~~~~~ild~~~~~~p~G~~giGel~v~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yr 592 (693)
.+... ....|+|+|++++.+ | ++ . + .| + ..|++
T Consensus 246 ~~~~~------~~~~~~~~p~~~~~~-~-~~------~----~----~g---------------------~----~~~~~ 278 (386)
T TIGR02372 246 GLREA------PDDPFRLLPDLACFA-D-TL------S----S----AG---------------------L----ARRLD 278 (386)
T ss_pred ccccC------CCCCcccCCCccccC-C-Cc------c----C----CC---------------------c----cceee
Confidence 33221 123466777665433 1 11 0 0 00 0 11689
Q ss_pred ecceEEEecCCcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecCCCCCC--h
Q 005501 593 HGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ--P 670 (693)
Q Consensus 593 TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~--~ 670 (693)
|||+++|++||+|+|+||+||+||++|++|+|.|||++|. +||+|.+|+|+. .+ ++++|+|+++++...+ .
T Consensus 279 tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~-~~p~V~~~~v~~-----~g-~~~~a~vv~~~~~~~~~~~ 351 (386)
T TIGR02372 279 LQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILE-RNPRVRAAAVRL-----DG-RRLKAFIVVAEDADEAELE 351 (386)
T ss_pred cCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHH-cCCCceEEEEEc-----CC-ceEEEEEEECCCCChHHHH
Confidence 9999999999999999999999999999999999999995 999999999853 34 7899999998654332 4
Q ss_pred HHHHHHHHHHHHhhcCCCceec
Q 005501 671 DKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 671 ~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
++++++++++|+.|+.|..+.+
T Consensus 352 ~~l~~~~~~~L~~~~~P~~i~~ 373 (386)
T TIGR02372 352 IELRATAARHLPAPARPDRFRF 373 (386)
T ss_pred HHHHHHHHHhCCCCCCCcEEEE
Confidence 5899999999999999998765
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=304.85 Aligned_cols=303 Identities=18% Similarity=0.159 Sum_probs=221.2
Q ss_pred CCCCeEEEEeccCCCCCcceEEecchhHHHHHHH---hchhcCCCCCCEEEEeCCccccchh-HHHHHHHHcCCEEEEec
Q 005501 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE---GWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATLALYQ 429 (693)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvi~~ 429 (693)
+.+++++++|||||||.||+|.++|+++...... ....++++++|+++...++++..+. ...+.++..|++++..+
T Consensus 73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (422)
T TIGR02155 73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPIS 152 (422)
T ss_pred ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecC
Confidence 4578899999999999999999999987654322 2344688999999887666654433 34566788899988776
Q ss_pred CCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCC--CCccccEEEeecCCCCcchHHHHHhhCCCCceecccccc
Q 005501 430 GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGT 507 (693)
Q Consensus 430 ~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~--~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~T 507 (693)
. .+++.+++.|+++++|++.++|+++..|++....... ...+||.+++|||+++++..+.+.+.+ +++++|.||+|
T Consensus 153 ~-~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG~t 230 (422)
T TIGR02155 153 G-GQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYGLS 230 (422)
T ss_pred C-CCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHh-CCceEecccch
Confidence 3 3468899999999999999999999988764322222 235899999999999999988888776 58999999999
Q ss_pred cccc-eeccCCcCCCCccCccCCCC--CCceEEEEC-CCCCCCCCCCCceeeEEEecccCCCcccccccccccccccccc
Q 005501 508 ELSS-AYIQGSLLQPQAFGAFSTAT--MTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (693)
Q Consensus 508 E~~~-~~~~~~~~~~~~~~~iG~p~--~~~~~~ild-~~~~~~p~G~~giGel~v~~gy~~~~~~~~~~~~t~~~f~~~p 583 (693)
|+++ .+...... ...|.++ ++..+.|+| ++|+++|+|+. |||++.. +++..| |
T Consensus 231 E~~~~~~~~~~~~-----~~~g~~~~~~~~~~eivd~~~g~~v~~Ge~--Gelvvt~-------------~~~~~~---p 287 (422)
T TIGR02155 231 EVIGPGVAMECVE-----TQDGLHIWEDHFYPEIIDPHTGEVLPDGEE--GELVFTT-------------LTKEAL---P 287 (422)
T ss_pred hhcCCceeecccc-----cCCCceEecCeeEEEEECCCCCCCCCCCCe--eEEEEec-------------CCcccc---c
Confidence 9853 12111110 1123343 356778999 57999999995 9999852 122233 1
Q ss_pred cCCCceeeeecceEEEecC-C-----cEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEE
Q 005501 584 MYKGMCLRRHGDIIKRTVG-G-----YIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (693)
Q Consensus 584 ~~~g~~~yrTGDl~~~~~d-G-----~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 657 (693)
. .||+|||+++++++ | .+++.||.||+||++|.+|+|.|||++|. .||+|...+++.+...... +.++
T Consensus 288 ~----~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~-~~~~v~~~~q~~~~~~~~~-~~~~ 361 (422)
T TIGR02155 288 V----IRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVIL-KMDELSPHYQLELTRNGHM-DELT 361 (422)
T ss_pred e----eeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHH-hCcCcCCCEEEEEEcCCCc-cEEE
Confidence 1 28999999999876 4 47899999999999999999999999995 9999985665655554444 6788
Q ss_pred EEEEecCCCC-----CChHHHHHHHHHHHHhhcCC
Q 005501 658 IFVVLKKGFT-----SQPDKLKMIFSKAIQSKLNP 687 (693)
Q Consensus 658 a~vv~~~~~~-----~~~~~l~~~l~~~L~~~m~P 687 (693)
+.|+..++.. .+.+.+.+.|++.+.+.+.+
T Consensus 362 ~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 396 (422)
T TIGR02155 362 LKVELKPESYTLRLHEQASLLAGEIQHTIKQEVGV 396 (422)
T ss_pred EEEEEecCcccccchHHHHHHHHHHHHHHHhccCc
Confidence 8888765421 11233455555555555444
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=323.11 Aligned_cols=473 Identities=16% Similarity=0.111 Sum_probs=317.7
Q ss_pred CCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCC
Q 005501 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD 265 (693)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl~p 265 (693)
...|+..+..+-....+.+...++||++....++.+++.|... ...|+.|++++..+.++++..++++++|..++|+||
T Consensus 47 ~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~~~g~~~~~idp 126 (1032)
T KOG1178|consen 47 AEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVLAAGLTFLPIDP 126 (1032)
T ss_pred hhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehhhcceEEEEecC
Confidence 3455555555443323345566999999999999999999999 999999999999999999999999999999999999
Q ss_pred CCC----HHHHHHHH---HhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcc
Q 005501 266 SFA----AREIATRL---RVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSS 338 (693)
Q Consensus 266 ~~~----~~~l~~~l---~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (693)
.+| ++++..+. ......++ ..+............+. ........+..+...
T Consensus 127 ~~~~~e~~~~~~~ia~~~~s~~~~i~----------~~l~i~~~~~~~~~~~~------------sv~~~~~~f~~~~~~ 184 (1032)
T KOG1178|consen 127 SWPNSELAGYLMRIAHFLTSVELEIV----------RRLNIIDILLNSLFPKL------------SVETIADSFQMVLHN 184 (1032)
T ss_pred CCcccccchHHHhhhhhheeccceeh----------hhhhhHHHHhhcccccc------------chhhccchhhhhhcc
Confidence 999 33222211 11111111 00011111111100000 000000111111111
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchhHHHHHH
Q 005501 339 VDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSS 418 (693)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 418 (693)
.. ........+|+.+++.||||+||.||||.-+|..+.+...|....+..+..+++-......++-.....+.+
T Consensus 185 ~~------~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f~~t~s~~~~~~~~~~~~d~i~~~~~~ 258 (1032)
T KOG1178|consen 185 ED------TREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTFPPTGSDRFTFKTSVYFDDTIQKFIGA 258 (1032)
T ss_pred CC------CcceeeecccccceEeecccccccccccchhHHHHHhhhhhccccCCcCccchhhhhheeecccchHHHHhh
Confidence 11 112233456788999999999999999999999999999999999999999988666777777777666666
Q ss_pred HHcCCEEEEecCCC---ChhhHHHHHHHcCCcEEeechHHHHHHHhcCcC-------------CCCCCccccEEEeecCC
Q 005501 419 FLNGATLALYQGSP---LERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL-------------EGLDWTKIRSFASTGET 482 (693)
Q Consensus 419 L~~G~~lvi~~~~~---~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~-------------~~~~l~~lr~v~~gGe~ 482 (693)
++.++..++++... .+..+.+.+++++++..+.+|++.+.++..... .....+.|+....+||+
T Consensus 259 ~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep 338 (1032)
T KOG1178|consen 259 LLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEP 338 (1032)
T ss_pred HhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCc
Confidence 66666655554333 257899999999999999999998887654221 01112378999999999
Q ss_pred CCcchHHHHHhhCCCCceecccccccccceeccCCcCCC------Ccc--CccCCCCC--CceEEEECCCCCCCCCCCCc
Q 005501 483 SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP------QAF--GAFSTATM--TAGLVILDECGVPYPDDQPC 552 (693)
Q Consensus 483 l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~------~~~--~~iG~p~~--~~~~~ild~~~~~~p~G~~g 552 (693)
....+.-.+...+...-...-|++|+.+...+....... ... .+...-+- .+-+.++...+.+.+.++
T Consensus 339 ~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v-- 416 (1032)
T KOG1178|consen 339 LLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLYRAGGEGEGGV-- 416 (1032)
T ss_pred cchhhhhhhhhcccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeeeccCcccCCcc--
Confidence 988887655544433333445888887764432211000 000 00000011 133455555566666555
Q ss_pred eeeEEEecccCCCccccccccccccccccccc---CCCceeeeecceEEEecCCcEEEEeecCCccccCCeeeehHHHHH
Q 005501 553 VGEVGLFPLYLGASDRLLNADHEEVYFRGMPM---YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 629 (693)
Q Consensus 553 iGel~v~~gy~~~~~~~~~~~~t~~~f~~~p~---~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~ 629 (693)
|..+++.++....-. .+...+.+.|.++.. ...+|+|||||+|+..++|.+.|.||.|+|||+||+||+++||++
T Consensus 417 -~~~~l~~~~~~~~~~-~~g~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t 494 (1032)
T KOG1178|consen 417 -GKGCLGAEQNLSSWV-VDGYSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNT 494 (1032)
T ss_pred -cceeeccccccccee-eccccchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhch
Confidence 444443333221100 011123334443332 224679999999999999999999999999999999999999999
Q ss_pred HHhccCcccceeEEEeecCCCCCceEEEEEEEecCCCCC-ChHHHHHHHHHHHHhhcCCCceecC
Q 005501 630 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS-QPDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 630 ~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~-~~~~l~~~l~~~L~~~m~P~~~v~~ 693 (693)
++. .||.|.++.+.++.+...+ +.+++||+...+.+. ....|+.+++.+|+.||+|+++|.+
T Consensus 495 ~v~-~~p~v~~~itl~~~~~~~~-~~l~aFvv~~~~~~~~~~~~i~~~l~~~La~y~vPs~~V~l 557 (1032)
T KOG1178|consen 495 VVE-VHPDVKEAITLARENSTVG-QTLLAFVVERGGSKSVLIRDIRNYLKKELASYMLPSLVVPL 557 (1032)
T ss_pred hhc-cCcchhhhheeeeeccccC-ceEEEEEeccCCCCchhHHHHHHhhcccccceecceEEEEh
Confidence 996 8999999999999988776 999999999876543 3467999999999999999988764
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=258.43 Aligned_cols=298 Identities=15% Similarity=0.106 Sum_probs=205.1
Q ss_pred CCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhch---hcCCCCCCEEEEeCCccccchhHH-HHHHHHcCCEEEEe
Q 005501 353 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALY 428 (693)
Q Consensus 353 ~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~~~~~~~~~~~-~~~~L~~G~~lvi~ 428 (693)
.+.++++.|.|||||||+||+|.++|+++......... ..+++++|+++...++++..+.+. .++++..|++++..
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 35678999999999999999999999998765544332 358899999999999888777644 45567788876543
Q ss_pred cCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCC--CCccccEEEeecCCCCcchHHHHHhhCCCCceeccccc
Q 005501 429 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL--DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG 506 (693)
Q Consensus 429 ~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~--~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~ 506 (693)
. . ....+++|+++++|.+..+|+.+..|.+....... ...++|.+++|||+++++..+++.+.+ +++++|.||+
T Consensus 163 ~-~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG~ 238 (445)
T TIGR03335 163 G-K--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYGS 238 (445)
T ss_pred C-c--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCCh
Confidence 2 2 24568899999999999999998877653222221 236899999999999999888887765 6899999999
Q ss_pred ccccceeccCCcCCCCccCccCCCCCCceEEEECCC-CCCCCCCCCceeeEEEecccCCCcccccccccccccccccccC
Q 005501 507 TELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMY 585 (693)
Q Consensus 507 TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~~-~~~~p~G~~giGel~v~~gy~~~~~~~~~~~~t~~~f~~~p~~ 585 (693)
||++.. ..+.. ......+-+.+.+.|+|++ +.++|+|+. |||++..-+-.. ..+ ..|..
T Consensus 239 TE~~~~-~~c~~-----~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~--GELvvT~L~~~~-------~r~-----~~Pli 298 (445)
T TIGR03335 239 TEGTMC-GECQA-----VAGLHVPEDLVHLDVYDPRHQRFLPDGEC--GRIVLTTLLKPG-------ERC-----GSLLI 298 (445)
T ss_pred hhhhhe-EEecC-----CCCccccCCceEEEEEcCCCCCCCcCCCc--eEEEEEecCCCC-------ccC-----CceEE
Confidence 998632 22211 1112223346789999976 567999995 999995422100 000 01211
Q ss_pred CCceeeeecceEEEec-C----C----cEEEEeecCCccccCCeeeehHHHHHHHhccC---cccceeE-EEeecCCCCC
Q 005501 586 KGMCLRRHGDIIKRTV-G----G----YIIVQGRADDTMNLGGIKTSSVEIERVCDQAD---ESILETA-AISVSPAGGG 652 (693)
Q Consensus 586 ~g~~~yrTGDl~~~~~-d----G----~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~---p~V~~a~-Vv~~~~~~~g 652 (693)
=|+|||++++.. + | .+...||+||+++++|.+|+|.+||++|. ++ +++..-. ++...+. .+
T Consensus 299 ----RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~-~~~~~~~~~~~~~~~~~~~~-~~ 372 (445)
T TIGR03335 299 ----NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVF-QRENMDSLTGEYEAFLYGEE-EG 372 (445)
T ss_pred ----EeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHh-ccCCCCCCCccEEEEEecCC-CC
Confidence 299999999742 2 2 14557999999999999999999999996 74 5554322 3322222 22
Q ss_pred ceEEEEEEEecCCCCCChHHHHHHHHHH
Q 005501 653 PEVLVIFVVLKKGFTSQPDKLKMIFSKA 680 (693)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~l~~~l~~~ 680 (693)
...+..-|...++...+.+++.+.+.+.
T Consensus 373 ~~~~~v~~e~~~~~~~~~~~~~~~~~~~ 400 (445)
T TIGR03335 373 EITLRVSLECEDKDNCSIHDIQENFTGT 400 (445)
T ss_pred CceEEEEEEecCcccchHHHHHHHHHHH
Confidence 2356666666554333445666666555
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-24 Score=231.67 Aligned_cols=455 Identities=15% Similarity=0.135 Sum_probs=302.8
Q ss_pred cCCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 005501 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM--FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVS 262 (693)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vp 262 (693)
.++.+||.+|+..-+. .+....++||++|..+|.++|.+|... +++||.|+++.++++|+++++.||+.+|.+++|
T Consensus 779 R~a~tp~~~a~~~~n~--~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly~GliPIp 856 (1363)
T KOG3628|consen 779 RAAKTPDHIAFTTLNA--RGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLYLGLIPIP 856 (1363)
T ss_pred HhhcCCCceEEEEecc--CCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHhcCeeeec
Confidence 4579999999988765 345567999999999999999999988 999999999999999999999999999999999
Q ss_pred cCCCCC------HHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHh
Q 005501 263 IADSFA------AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL 336 (693)
Q Consensus 263 l~p~~~------~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (693)
+.|-.. -..+..+++.++++.|+++.......+.......+.+..-..+.+++.... +|..-.
T Consensus 857 v~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~-----------t~~k~~ 925 (1363)
T KOG3628|consen 857 VPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPE-----------TIRKRK 925 (1363)
T ss_pred cCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccch-----------hhhhhh
Confidence 988543 336788999999999999975432222222222221111111222211100 011111
Q ss_pred cccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchh-HHH
Q 005501 337 SSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VIL 415 (693)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~ 415 (693)
..... .....++....++.+||+=|.--++|.--||.++|.++++.++.......+.+..-++.++++.-..|+ ...
T Consensus 926 ~~~~k--~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wc 1003 (1363)
T KOG3628|consen 926 KNIKK--LNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWC 1003 (1363)
T ss_pred hhhhc--cCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHccccCCceEEEecCccchhHHHHH
Confidence 11110 112233344567889999888889999999999999999999999999888888888877777766666 445
Q ss_pred HHHHHcCCEEEEecC---CCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccc------cEEEeecCCCCcc
Q 005501 416 FSSFLNGATLALYQG---SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI------RSFASTGETSNVD 486 (693)
Q Consensus 416 ~~~L~~G~~lvi~~~---~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~l------r~v~~gGe~l~~~ 486 (693)
+...++|...++.++ ..++..|+..|++++|.-++.+-+.++...+....+..+++.. -.++..-|.....
T Consensus 1004 LlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv~~~~RPr~a 1083 (1363)
T KOG3628|consen 1004 LLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVVPAEERPRIA 1083 (1363)
T ss_pred HHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceeeecCCccHHH
Confidence 677788998777653 3367889999999999999999888888776533222222211 2233333333333
Q ss_pred hHHHHHhhCCCC-----ce-------------ecccccccccceeccCCcCCCCcc-------------CccCCCCCCce
Q 005501 487 DDLWLSSKAWYN-----AI-------------IESCGGTELSSAYIQGSLLQPQAF-------------GAFSTATMTAG 535 (693)
Q Consensus 487 ~~~~~~~~~~~~-----~l-------------~n~YG~TE~~~~~~~~~~~~~~~~-------------~~iG~p~~~~~ 535 (693)
+...+.+.+... .+ .+.|-..|-+..+.-.+....... -..|+-.++++
T Consensus 1084 li~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~ 1163 (1363)
T KOG3628|consen 1084 LIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTD 1163 (1363)
T ss_pred HHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccce
Confidence 333333332100 01 123333333322211111100000 11377788999
Q ss_pred EEEECCC-CCCCCCCCCceeeEEE-----ecccCCCcccccccccccccccccccCCCceeeeecceEEEec------C-
Q 005501 536 LVILDEC-GVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV------G- 602 (693)
Q Consensus 536 ~~ild~~-~~~~p~G~~giGel~v-----~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~------d- 602 (693)
+.|++++ ..|+..|+ +||||+ +.+|+...+. ++.+...++.. .....+..|-||||+|.... .
T Consensus 1164 i~IvnPEtk~pc~dge--~GEIW~~S~hnA~~~~~~~d~-~~~~~fn~rl~-~g~~~~~sy~RTG~LGFl~~t~~t~~~~ 1239 (1363)
T KOG3628|consen 1164 IAIVNPETKGPCRDGE--LGEIWVNSAHNASCSFTIGDE-LRSNHFNARLS-SGDLLGKSYARTGDLGFLRRTSLTDANV 1239 (1363)
T ss_pred eEEeCCccccccccCC--cceEEeccccccccccccCch-hhhhhhhhhcc-ccccccccceeeeeeeeeeeeecccccc
Confidence 9999975 56888888 699999 4456654221 22222222211 12234677999999998742 2
Q ss_pred ---CcEEEEeecCCccccCCeeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecC
Q 005501 603 ---GYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 664 (693)
Q Consensus 603 ---G~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~ 664 (693)
.-||++|-+++.+-++|.|-.|.+||..+.+.||.|.+|+|+... ..+|..+.+..
T Consensus 1240 e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~------glvVvviE~~g 1298 (1363)
T KOG3628|consen 1240 ERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQAT------GLVVVVIECHG 1298 (1363)
T ss_pred eeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEeeC------CeEEEEEEecC
Confidence 348999999999999999999999999998899999999998532 35555555543
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-24 Score=210.13 Aligned_cols=216 Identities=16% Similarity=0.133 Sum_probs=158.6
Q ss_pred CCCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHHHHHh-h-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 005501 186 RRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDT-M-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSI 263 (693)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~-~-v~~gd~V~i~~~~s~~~vva~LA~l~aGa~~vpl 263 (693)
++.+|+++|+++.+++ .+..+++||+||.++++++|+.|++ . +++||+|+|+++|+++++++++|++++|++++|+
T Consensus 6 ~~~~p~~~al~~~~~~--~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~vp~ 83 (227)
T TIGR03089 6 LAADPASPRLTFYDDA--TGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVVLA 83 (227)
T ss_pred hhhCCCCcEEEEEcCC--CCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEeC
Confidence 4678999999864321 0112479999999999999999998 8 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCC--CCCCCCCCCCCcccHHHHhcccCC
Q 005501 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAI--GNDVGIPLREQDLSWKDFLSSVDY 341 (693)
Q Consensus 264 ~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 341 (693)
+ +++++++|++++...... .+..++.+... ..........+..+|.+.......
T Consensus 84 n-------------~s~a~~~v~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (227)
T TIGR03089 84 G-------------DPDADVVVTGPDRLAAAA-----------GSGEVVALSLDPLGRRVAGELPPGVIDFAPEVRVHGD 139 (227)
T ss_pred C-------------CCCCCEEEeCcchhhhcc-----------cCCceEEEeccccccCCCCCCCCcccchhhhhhccCC
Confidence 5 789999999886542211 11222332110 000000011223456555442211
Q ss_pred CCCCCCCCCc-cCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhchhcCCCCCCEEEEeCCccccchh-HHHHHHH
Q 005501 342 HPRPNYYSPV-YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSF 419 (693)
Q Consensus 342 ~~~~~~~~~~-~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L 419 (693)
...+. ...++|++.|+||||+ +|+++.... ...+++++|+++ .+|++|..++ ..++.+|
T Consensus 140 -----~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l 200 (227)
T TIGR03089 140 -----QFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPL 200 (227)
T ss_pred -----CCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHh
Confidence 11111 3456899999999986 666654443 556789999999 9999999998 5688999
Q ss_pred HcCCEEEEecCCCChhhHHHHHHHcCCc
Q 005501 420 LNGATLALYQGSPLERSFGKFVQDAGVT 447 (693)
Q Consensus 420 ~~G~~lvi~~~~~~~~~~~~~i~~~~vt 447 (693)
..|+++++++ .+++..+++.|+++|||
T Consensus 201 ~~G~t~v~~~-rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 201 AAGGSLVLVT-HPDPARLDQIAETERVT 227 (227)
T ss_pred ccCceEEEec-CCCHHHHHHHHHhhcCC
Confidence 9999999996 78999999999999997
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-21 Score=198.56 Aligned_cols=282 Identities=22% Similarity=0.200 Sum_probs=205.7
Q ss_pred cCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHh---chhcCCCCCCEEEEeCCccccch-hHHHHHHHHcCCEEEE
Q 005501 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLAL 427 (693)
Q Consensus 352 ~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~-~~~~~~~L~~G~~lvi 427 (693)
..+.++...|=-||||||+|+-+..++..+....... ....+...+|++..+..++...+ +...+++--.|++++-
T Consensus 86 ~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip 165 (438)
T COG1541 86 AVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIP 165 (438)
T ss_pred cccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEc
Confidence 3455677778999999999999999998765443333 33467889999887776654433 3444555555655543
Q ss_pred ecCCCChhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCC--CCCccccEEEeecCCCCcchHHHHHhhCCCCceecccc
Q 005501 428 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 505 (693)
Q Consensus 428 ~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~--~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (693)
..+ -+-+..+++++++++|++.++|+.+..|.+...... ..-.+||.+++|+|+++++..+.+..++ ++..++.||
T Consensus 166 ~~~-g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~-g~~~~diYG 243 (438)
T COG1541 166 ISG-GNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIYG 243 (438)
T ss_pred cCC-ccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHh-CCceeeccc
Confidence 332 245778899999999999999999999987654432 2335899999999999999999998887 688899999
Q ss_pred ccccccee-ccCCcCCCCccCccCCCCCCceEEEEC-CCCCCCCCCCCceeeEEEecccCCCcccccccccccccccccc
Q 005501 506 GTELSSAY-IQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 583 (693)
Q Consensus 506 ~TE~~~~~-~~~~~~~~~~~~~iG~p~~~~~~~ild-~~~~~~p~G~~giGel~v~~gy~~~~~~~~~~~~t~~~f~~~p 583 (693)
.||..++- ..+.... -..-.-++.-+.|+| ..|+++|.|+. |||+++.- +++. .|
T Consensus 244 ltE~~g~g~~eC~~~~-----glhi~eD~~~~Ei~dP~t~e~l~dge~--GelV~T~L-------------~~~~---~P 300 (438)
T COG1541 244 LTEGFGPGAGECTERN-----GLHIWEDHFIFEIVDPETGEQLPDGER--GELVITTL-------------TKEG---MP 300 (438)
T ss_pred cccccCCccccccccc-----CCCcchhhceeeeecCCcCccCCCCCe--eEEEEEec-------------cccC---cc
Confidence 99997652 2222111 112344567889999 56999999995 99998421 1111 12
Q ss_pred cCCCceeeeecceEEEecC----Cc-----EEEEeecCCccccCCeeeehHHHHHHHhccCcccc-eeEEEeecCCCCCc
Q 005501 584 MYKGMCLRRHGDIIKRTVG----GY-----IIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL-ETAAISVSPAGGGP 653 (693)
Q Consensus 584 ~~~g~~~yrTGDl~~~~~d----G~-----l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~-~a~Vv~~~~~~~g~ 653 (693)
.. -|+|||+++..++ |. ..+.||+||+++++|.+|.|..||.+|. +.+.+. +-.++... ... .
T Consensus 301 lI----RYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~-~~~~~~~~yqi~~~~-~~~-~ 373 (438)
T COG1541 301 LI----RYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLL-QIPEVTPHYQIILTR-NGG-L 373 (438)
T ss_pred eE----EEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHh-cccCCCceEEEEEec-CCC-C
Confidence 11 2999999999874 32 4689999999999999999999999997 899998 55555444 222 3
Q ss_pred eEEEEEEEecCC
Q 005501 654 EVLVIFVVLKKG 665 (693)
Q Consensus 654 ~~l~a~vv~~~~ 665 (693)
..|.+-|++.++
T Consensus 374 d~L~V~vE~~~~ 385 (438)
T COG1541 374 DELTVRVELENE 385 (438)
T ss_pred ceEEEEEEecCc
Confidence 688888888764
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-14 Score=155.60 Aligned_cols=258 Identities=17% Similarity=0.094 Sum_probs=162.9
Q ss_pred eEEEEeccCCCCCcceEEecchhHHHHHHHh---chhcCCCCCCEEEEeCCccccchhHHHHHHHHcCCE-EEEecCCCC
Q 005501 358 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGAT-LALYQGSPL 433 (693)
Q Consensus 358 ~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~-lvi~~~~~~ 433 (693)
-..+..||||||+|-.+..+........... ....++..++++..+. +..+ .++..+.+... +..++-..+
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~---~~~~--~ly~~~~~~~~~~~~~~l~~~ 175 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFL---RADN--NLYQSVNNRWISLDFFDLLAP 175 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEE---ccCh--hHHHHHHhccceeeecCCCcC
Confidence 3567789999999999999988653222211 1223556667665542 1111 22233333222 334443345
Q ss_pred hhhHHHHHHHcCCcEEeechHHHHHHHhcCcCCCCCCccccEEEeecCCCCcchHHHHHhhCCCCceeccccccccccee
Q 005501 434 ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAY 513 (693)
Q Consensus 434 ~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 513 (693)
.+..++.|++++++++.++|+.+..|.+.......+ .+++.++++||.+++...+.+.+.+ ++++++.||+|| +...
T Consensus 176 ~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE-g~la 252 (430)
T TIGR02304 176 FQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE-GFLA 252 (430)
T ss_pred HHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch-hheE
Confidence 678999999999999999999999998764333333 4789999999999998888888777 589999999999 4433
Q ss_pred ccCCcCCCCccCccCCCCCCceEE--EECCCCCCCCCCCCceeeEEEecccCCCcccccccccccccccccccCCCceee
Q 005501 514 IQGSLLQPQAFGAFSTATMTAGLV--ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLR 591 (693)
Q Consensus 514 ~~~~~~~~~~~~~iG~p~~~~~~~--ild~~~~~~p~G~~giGel~v~~gy~~~~~~~~~~~~t~~~f~~~p~~~g~~~y 591 (693)
..+.. +....--..+-+. ++|++++++ .+|+. ..+. ..|.. =|
T Consensus 253 ~eC~~------g~lHl~ed~~~vE~~ivD~~~~~~---------~ViT~-L~n~---------------~~PlI----RY 297 (430)
T TIGR02304 253 STCRC------GTLHLNEDLVHIEKQYLDEHKRFV---------PIITD-FTRT---------------TQPIV----RY 297 (430)
T ss_pred EecCC------CCEEEccccEEEEeeEECCCCceE---------EEEec-CCCc---------------cceEE----ee
Confidence 33311 1111111222333 788766433 23321 1110 01211 29
Q ss_pred eecceEEEecC----Cc----E-EEEeecCCcccc---CC--eeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEE
Q 005501 592 RHGDIIKRTVG----GY----I-IVQGRADDTMNL---GG--IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 657 (693)
Q Consensus 592 rTGDl~~~~~d----G~----l-~~~GR~dd~ik~---~G--~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 657 (693)
+|||++++.++ |. | .+.||.||++++ +| ..|.|..|+.++....++|.+.-++... . ..+.
T Consensus 298 rtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~---~--~~l~ 372 (430)
T TIGR02304 298 RLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTG---S--AQLE 372 (430)
T ss_pred eCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEcc---C--CeEE
Confidence 99999998554 32 3 488999999985 34 5569999998854467899988776422 2 4566
Q ss_pred EEEEec
Q 005501 658 IFVVLK 663 (693)
Q Consensus 658 a~vv~~ 663 (693)
..+++.
T Consensus 373 v~~~~~ 378 (430)
T TIGR02304 373 LIADCE 378 (430)
T ss_pred EEEEeC
Confidence 666654
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-16 Score=161.74 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=85.4
Q ss_pred eeeeecceEEE-ecCCcEEEEeecCCccccCC---eeeehHHHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecC
Q 005501 589 CLRRHGDIIKR-TVGGYIIVQGRADDTMNLGG---IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 664 (693)
Q Consensus 589 ~~yrTGDl~~~-~~dG~l~~~GR~dd~ik~~G---~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~ 664 (693)
+||+|||+|++ |+||+|+|.||.| +| ++|+|. ||++|. +||+|.+|+|++++++..| +.++|||++..
T Consensus 209 gW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~-~hp~V~eaaVvgvpd~~~g-e~v~A~Vv~~~ 280 (365)
T PRK09188 209 IWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALK-SDPAVSDVAIALFSLPAKG-VGLYAFVEAEL 280 (365)
T ss_pred cEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHH-hCCCccEEEEEEEEcCCCC-eEEEEEEEECC
Confidence 39999999998 6999999999998 88 799999 999995 9999999999999999888 99999999874
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCceec
Q 005501 665 GFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 665 ~~~~~~~~l~~~l~~~L~~~m~P~~~v~ 692 (693)
..+.++|+++|+++|+. ++|..+.+
T Consensus 281 --~~~~~el~~~l~~~L~~-kvP~~v~~ 305 (365)
T PRK09188 281 --PADEKSLRARLAGAKPP-KPPEHIQP 305 (365)
T ss_pred --CCCHHHHHHHHHhhchh-cCCcEEEE
Confidence 46778999999999999 99998765
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-10 Score=129.77 Aligned_cols=433 Identities=14% Similarity=0.117 Sum_probs=260.7
Q ss_pred CCCCCcEEEEEecCCCCCCcceeecHHHHHHHHHHHHH-HHHhh-cCCCCEEEEEcCCC--HHHHHHHHHHHHhCcEEEe
Q 005501 187 RKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVAN-ALDTM-FSKGDAIAIDMPMT--VRAVIIYLAIILAGYVVVS 262 (693)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~-~L~~~-v~~gd~V~i~~~~s--~~~vva~LA~l~aGa~~vp 262 (693)
..++..+|.++-+..+ ....+||..+..++.+.|+ .|.+. .+++|+|.++...+ .++++++++|.-.|.+.+|
T Consensus 105 nhs~~~ta~i~id~kg---k~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp 181 (1363)
T KOG3628|consen 105 NHSATSTAHICIDKKG---KATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVP 181 (1363)
T ss_pred cCCCCCceEEEEcCCC---ceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeecc
Confidence 4567788888887642 3669999999999999999 55555 99999999998655 7999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeecceeeCCccccchhhHhhcCCCceEEEcCCCCCCCCCCCCCcccHHHHhcccCCC
Q 005501 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 342 (693)
Q Consensus 263 l~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (693)
+.+.++.+++..+++....+++++.....+.+... . . .........+|......+..
T Consensus 182 ~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~---------~-~------------~~s~~k~v~~w~t~~~k~~~- 238 (1363)
T KOG3628|consen 182 LSELSSSEELKDIVNPTPERVALTTEAGERAFIND---------N-S------------PVSLAKAVAWWKTNDFKGNY- 238 (1363)
T ss_pred chhhhhhhhhhcccCCCccceEeehhhhHHHhhhc---------c-C------------cccHHHHHHhhhccccccee-
Confidence 99999999999999999999999887543111100 0 0 00000000011000000000
Q ss_pred CCCCCCCCccCCCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhc--------------------hhcCCCCCCEEEE
Q 005501 343 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW--------------------AHIDLKVGDVYCW 402 (693)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~--------------------~~~~~~~~d~~l~ 402 (693)
.......+..... ..||=||++++|.--|++.+|+ +.+..+... ..++....+.++.
T Consensus 239 -~~~k~~~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~ 315 (1363)
T KOG3628|consen 239 -TKDKIKKPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLT 315 (1363)
T ss_pred -ehhhccCCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceee
Confidence 0001111122223 7999999999999999999998 443222211 1123344555555
Q ss_pred eCCccccchh-HHHHHHHHcCCEEEEecCCC--ChhhHHHHHHHcCCcEEeechHHHHHHHhc----C-------cCCCC
Q 005501 403 PTNLGWVMGP-VILFSSFLNGATLALYQGSP--LERSFGKFVQDAGVTVLGTVPSLVKAWRNT----N-------CLEGL 468 (693)
Q Consensus 403 ~~~~~~~~~~-~~~~~~L~~G~~lvi~~~~~--~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~----~-------~~~~~ 468 (693)
.....-..|+ ..++.+|++|.|.+.+|... .|..+..++.+++.+++..=-..+...... . .....
T Consensus 316 ~~~~s~~lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~ 395 (1363)
T KOG3628|consen 316 NLDPSQQLGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTP 395 (1363)
T ss_pred ccCcccccchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCC
Confidence 4444444444 44788999999999988643 456788899999999887654444333211 0 01224
Q ss_pred CCccccEEEeecCCCCcchH-----HHHHhhCC-CCc---------------eecccccccccceeccCCcC---C----
Q 005501 469 DWTKIRSFASTGETSNVDDD-----LWLSSKAW-YNA---------------IIESCGGTELSSAYIQGSLL---Q---- 520 (693)
Q Consensus 469 ~l~~lr~v~~gGe~l~~~~~-----~~~~~~~~-~~~---------------l~n~YG~TE~~~~~~~~~~~---~---- 520 (693)
+++++|..++.-+.+..+.. +|++.... ..+ .+..=+.+|.+....-.+.. .
T Consensus 396 d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e 475 (1363)
T KOG3628|consen 396 DLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGE 475 (1363)
T ss_pred CccceeeeEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccc
Confidence 67899999999888877642 23331110 000 01111223333211111100 0
Q ss_pred ----------------------CCccCccCCCCC-CceEEEECCC-CCCCCCCCCceeeEEE-----ecccCCCcccccc
Q 005501 521 ----------------------PQAFGAFSTATM-TAGLVILDEC-GVPYPDDQPCVGEVGL-----FPLYLGASDRLLN 571 (693)
Q Consensus 521 ----------------------~~~~~~iG~p~~-~~~~~ild~~-~~~~p~G~~giGel~v-----~~gy~~~~~~~~~ 571 (693)
.-....+|.-.| ++.+.|++++ .+.|..++ +||||| +.+|++.+.
T Consensus 476 ~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~e--VGEIwVsS~~~~~~~~al~~---- 549 (1363)
T KOG3628|consen 476 GLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDE--VGEIWVSSNSLGKLFYALDK---- 549 (1363)
T ss_pred eeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCc--ceeEEEecCCcccceeeccc----
Confidence 000011333333 3556677754 67788888 699999 345554332
Q ss_pred cccccccccccc------cCCCceeeeecceEEEecCCcEEEEeecCCcc-ccCCeeeehHHHH----------HHHhcc
Q 005501 572 ADHEEVYFRGMP------MYKGMCLRRHGDIIKRTVGGYIIVQGRADDTM-NLGGIKTSSVEIE----------RVCDQA 634 (693)
Q Consensus 572 ~~~t~~~f~~~p------~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~i-k~~G~ri~~~eIE----------~~L~~~ 634 (693)
.|..-|...| ......+.|||=+|...+ |.++|+|-.+|++ -..|-+....+|- .+. +.
T Consensus 550 --~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~-gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~-R~ 625 (1363)
T KOG3628|consen 550 --QTENTFKATPVESSGKPPSNVPFMRTGLLGFVHN-GKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVM-RG 625 (1363)
T ss_pred --cccceEEeeeccccCCCCccchhhhhcceeeeeC-CeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHH-hc
Confidence 3333343322 233456889999999975 4577777666665 4788887765543 333 45
Q ss_pred CcccceeEEEeecCCCCCceEEEEEEEecCC
Q 005501 635 DESILETAAISVSPAGGGPEVLVIFVVLKKG 665 (693)
Q Consensus 635 ~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~ 665 (693)
.+.|-++.++- . ++++..++-++.
T Consensus 626 v~~VF~~saf~------~-E~~~Vv~~esP~ 649 (1363)
T KOG3628|consen 626 VIAVFDVSAFE------D-EHIVVVVLESPD 649 (1363)
T ss_pred cceEEEEeeee------c-ceEEEEEEeCcc
Confidence 66777777763 2 666666665553
|
|
| >PF13745 HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-13 Score=112.45 Aligned_cols=84 Identities=17% Similarity=0.134 Sum_probs=51.0
Q ss_pred ChhhHHHHHHHhHhcCCCCCCCCchhhhHHHhhhcccCCCCC------CccccCCcccccccchHHHHHHhCCcccccc-
Q 005501 41 DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP------PLYWFPSLDQSKLTNLGNALEIHGPKLLGRA- 113 (693)
Q Consensus 41 ~hq~~Pf~~~lv~~l~~~r~~~~~~~plfqv~~~~~~~~~~~------~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~- 113 (693)
+||+|||++ |++.|++.|+.+.+ |||||||++|+..... .....+.....++|||.+.+.+.++++.+.+
T Consensus 1 ~hq~~Pf~~-lv~~l~~~r~~~~~--plfqv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DL~l~~~~~~~~l~~~~~ 77 (91)
T PF13745_consen 1 EHQDYPFER-LVEALGPPRDPSRN--PLFQVMFNYQNFSQSALDLGGLRLEPIPLENGGAKFDLTLEVREDGDGLRLQLE 77 (91)
T ss_dssp -T--S-HHH-HHHHT-----TTS---SS-SEEEEEE----S----SSEEEEE-SS--SB-SSSEEEEEEE-SS-EEEEEE
T ss_pred CCccCCHHH-HHHHhCcccCCccc--cccCeEEEEEecccccccCCCceEEEeeccccceeeeEEEEEEecCCeEEEEEE
Confidence 699999999 99999999985555 5599999999976532 1123344567899999999999999999999
Q ss_pred cCCCCCCHHHHHHHHhhCH
Q 005501 114 YKDPITSFRLFQKFTVEHP 132 (693)
Q Consensus 114 y~~~~~~~~~~~~~ti~~~ 132 (693)
|++ ++|++++|++|
T Consensus 78 Y~~-----~lf~~~ti~~~ 91 (91)
T PF13745_consen 78 YNT-----DLFSEETIERM 91 (91)
T ss_dssp EET-----TT--HHHHHHH
T ss_pred EEh-----HhCCHHHHhcC
Confidence 999 99999999875
|
|
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-08 Score=103.40 Aligned_cols=235 Identities=17% Similarity=0.089 Sum_probs=127.0
Q ss_pred CCCCeEEEEeccCCCCCcceEEecchhHHHHHHHhc---hhcCCCCC--CEEEEeCCccccc---h--hHHHHHHHHcCC
Q 005501 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVG--DVYCWPTNLGWVM---G--PVILFSSFLNGA 423 (693)
Q Consensus 354 ~~~~~a~il~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~--d~~l~~~~~~~~~---~--~~~~~~~L~~G~ 423 (693)
+.+++..++-||||||.|--+.+.+..+........ ..+..... -.++...|-.... + .......+..+.
T Consensus 87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~ 166 (365)
T PF04443_consen 87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS 166 (365)
T ss_pred ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence 456778889999999998656665555544332222 22222112 2233333322211 1 122233344555
Q ss_pred EEEEecCCCChhhHHHHH----HHcCCcEEeechHHHHHHHhcCcCC--CCCCc-cccEEEeec------CCCCcc-hHH
Q 005501 424 TLALYQGSPLERSFGKFV----QDAGVTVLGTVPSLVKAWRNTNCLE--GLDWT-KIRSFASTG------ETSNVD-DDL 489 (693)
Q Consensus 424 ~lvi~~~~~~~~~~~~~i----~~~~vt~l~~~P~~l~~l~~~~~~~--~~~l~-~lr~v~~gG------e~l~~~-~~~ 489 (693)
.-.+-....+.+.+...+ .+.++..++..|.++-.++...... ...|+ ..+.+-.|| |.++.+ ...
T Consensus 167 ~~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~ 246 (365)
T PF04443_consen 167 RFALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFYA 246 (365)
T ss_pred eeeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHHH
Confidence 533322334555544443 3556777888777666555432222 23333 345555554 445543 345
Q ss_pred HHHhhCCC---CceecccccccccceeccCCcCCCCccCccCCCCCCceEEEECC-CCCCCCCCCCceeeEEEecccCCC
Q 005501 490 WLSSKAWY---NAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDE-CGVPYPDDQPCVGEVGLFPLYLGA 565 (693)
Q Consensus 490 ~~~~~~~~---~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ild~-~~~~~p~G~~giGel~v~~gy~~~ 565 (693)
.+.+.+.- ..+++.||+||....+..+.... .++|-. +.|.|+ +.+++|.|++ |-|.+-..+...
T Consensus 247 ~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~~--------~~~p~w-V~iRDp~tl~~~~~Ge~--Gli~vidl~~~s 315 (365)
T PF04443_consen 247 RLQEVFGVIPIENIYDMYGMTELNSQAYECGHGH--------FHVPPW-VIIRDPETLEPLPPGET--GLIQVIDLANTS 315 (365)
T ss_pred HHHHHHCCCCHHHeeeeeeccccchhheeCCCCc--------ccCCCe-EEEECCCCCcCCCCCCe--eEEEEEcccccC
Confidence 55555532 36999999999876544331111 133333 777785 5789999985 888773221110
Q ss_pred cccccccccccccccccccCCCceeeeecceEEEecC--------CcEEEEeecCCccccCCee
Q 005501 566 SDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG--------GYIIVQGRADDTMNLGGIK 621 (693)
Q Consensus 566 ~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~d--------G~l~~~GR~dd~ik~~G~r 621 (693)
.++ ..-|.|+|.+..+ .++.++||.+.- .+||=.
T Consensus 316 -------------------~p~--~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~a-e~RGCs 357 (365)
T PF04443_consen 316 -------------------YPG--FILTEDLGVLHGDDDCGCRKGKYFEVLGRADGA-EIRGCS 357 (365)
T ss_pred -------------------CCc--EEEEcceeeecCCCCCCCccCCEEEEEeCCCCC-ccCCcH
Confidence 112 3569999988655 279999998743 345543
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=98.85 E-value=4e-09 Score=83.80 Aligned_cols=58 Identities=29% Similarity=0.414 Sum_probs=50.8
Q ss_pred HHHHHHhccCcccceeEEEeecCCCCCceEEEEEEEecCCCCCChHHHHHHHHHHHHhhcCC--Ccee
Q 005501 626 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP--LFKV 691 (693)
Q Consensus 626 eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~m~P--~~~v 691 (693)
|||++|. +||+|.+|+|++++++..| +.++|||++ +.++|+++++++||.||+| .+++
T Consensus 1 EIE~~l~-~~~~V~~~~V~~~~d~~~g-~~l~a~vv~------~~~~i~~~~~~~l~~~~~P~~~~~v 60 (73)
T PF13193_consen 1 EIESVLR-QHPGVAEAAVVGVPDEDWG-ERLVAFVVL------DEEEIRDHLRDKLPPYMVPRRIRFV 60 (73)
T ss_dssp HHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEE------HHHHHHHHHHHHS-GGGS-SEEEEE
T ss_pred CHHHHHh-cCCCccEEEEEEEEccccc-ccceeEEEe------eecccccchhhhCCCcceeeEEEEc
Confidence 8999995 9999999999999998888 999999998 3489999999999999999 5554
|
... |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.3e-06 Score=92.81 Aligned_cols=74 Identities=22% Similarity=0.270 Sum_probs=51.4
Q ss_pred eeecceEEEec--CC--cEEEEeecCCccccCCeeeehHHHHHHHhcc----CcccceeEEEeecCCCCCceEEEEEEEe
Q 005501 591 RRHGDIIKRTV--GG--YIIVQGRADDTMNLGGIKTSSVEIERVCDQA----DESILETAAISVSPAGGGPEVLVIFVVL 662 (693)
Q Consensus 591 yrTGDl~~~~~--dG--~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~----~p~V~~a~Vv~~~~~~~g~~~l~a~vv~ 662 (693)
|+.||+++... ++ .++|+||.+.++++.|+++.-.+|+.+|.+. .-.+.+..+.+....... ..-+.|+.+
T Consensus 371 Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~-~~Y~~~~e~ 449 (528)
T PF03321_consen 371 YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNP-PHYVLFWEL 449 (528)
T ss_dssp EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSS-BEEEEEEEE
T ss_pred eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCC-CceEEEEEe
Confidence 89999999853 45 7999999999999999999999999999633 234566666654322232 567777777
Q ss_pred cCC
Q 005501 663 KKG 665 (693)
Q Consensus 663 ~~~ 665 (693)
...
T Consensus 450 ~~~ 452 (528)
T PF03321_consen 450 EGE 452 (528)
T ss_dssp CS-
T ss_pred CCC
Confidence 653
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0021 Score=71.78 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=37.9
Q ss_pred eeecceEEEec----CCcEEEEeecCCccccCCeeeehHHHHHHHh
Q 005501 591 RRHGDIIKRTV----GGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (693)
Q Consensus 591 yrTGDl~~~~~----dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~ 632 (693)
|+.||.++... --.|.|+||.+.++++.|+++.-.+++.+|.
T Consensus 410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~ 455 (597)
T PLN02249 410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVE 455 (597)
T ss_pred eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHH
Confidence 89999999864 2468999999999999999999999999885
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.008 Score=66.58 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=37.2
Q ss_pred eeecceEEEe----cCCcEEEEeecCCccccCCeeeehHHHHHHHh
Q 005501 591 RRHGDIIKRT----VGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (693)
Q Consensus 591 yrTGDl~~~~----~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~ 632 (693)
||.||+++.. .--.+.|++|.+.+..+.|.+..-.++-.++.
T Consensus 423 YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~ 468 (612)
T PLN02620 423 YRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVK 468 (612)
T ss_pred EecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHH
Confidence 8999999874 34579999999999999999999999988875
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.028 Score=62.58 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=37.3
Q ss_pred eeecceEEEe----cCCcEEEEeecCCccccCCeeeehHHHHHHHh
Q 005501 591 RRHGDIIKRT----VGGYIIVQGRADDTMNLGGIKTSSVEIERVCD 632 (693)
Q Consensus 591 yrTGDl~~~~----~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~ 632 (693)
||.||+++.. .--.+.|++|.+.+..+.|.+..-.++-.++.
T Consensus 417 YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~ 462 (606)
T PLN02247 417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVT 462 (606)
T ss_pred EecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHH
Confidence 8999999874 34679999999999999999999999988885
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.11 Score=43.35 Aligned_cols=65 Identities=23% Similarity=0.378 Sum_probs=46.0
Q ss_pred CeeeehHHHHHHHhccCcccc-eeEEEeecCCCCCceEEEEEEEecCCCCC---ChHHHHHHHHHHHHhhcC
Q 005501 619 GIKTSSVEIERVCDQADESIL-ETAAISVSPAGGGPEVLVIFVVLKKGFTS---QPDKLKMIFSKAIQSKLN 686 (693)
Q Consensus 619 G~ri~~~eIE~~L~~~~p~V~-~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~---~~~~l~~~l~~~L~~~m~ 686 (693)
|.+|+|..||++|. ++|++. +..++ +....+. ..+...|.+.++..- +.+++++.++++|.+.+.
T Consensus 1 GvnvfP~~Ie~vl~-~~~~~~~~y~i~-v~~~~~~-D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lg 69 (96)
T PF14535_consen 1 GVNVFPSQIEEVLR-EFPEVSPEYQIV-VTREGGL-DELTVRVELRPGFSDDAEDLEALAERIAERLKERLG 69 (96)
T ss_dssp TEEE-HHHHHHHHC-TSTTEEEEEEEE-EEEETTE-EEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHS
T ss_pred CcEECHHHHHHHHH-hCcCCCCcEEEE-EEcCCCC-cEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcC
Confidence 88999999999995 999999 44444 4333333 788888888875422 246778888887777654
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.22 E-value=1.2 Score=47.62 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=68.7
Q ss_pred eecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH--HHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEE
Q 005501 209 LMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV--RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285 (693)
Q Consensus 209 ~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~--~~vva~LA~l~aGa~~vpl~p~~~~~~l~~~l~~~~~~~il 285 (693)
-+|..|+...+..+|+.|... +.+||+|.++..-+. .-+-..+|+.++|++++|+.+. .-++-..++++.++.+|.
T Consensus 109 ~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI~ 187 (438)
T COG1541 109 GYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVIA 187 (438)
T ss_pred ecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEEE
Confidence 589999999999999999999 999999999876221 1156788999999999999884 456778899999999999
Q ss_pred eecce
Q 005501 286 TQDFI 290 (693)
Q Consensus 286 ~~~~~ 290 (693)
+.+.+
T Consensus 188 ~tps~ 192 (438)
T COG1541 188 ATPSY 192 (438)
T ss_pred EChHH
Confidence 98864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 693 | ||||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 1e-34 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 1e-34 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 1e-34 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 1e-34 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 2e-34 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 1e-33 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 1e-33 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 5e-20 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 3e-08 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 2e-07 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 2e-07 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 2e-07 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 3e-07 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 1e-06 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 4e-05 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 1e-04 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 1e-04 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 2e-04 | ||
| 3ite_A | 562 | The Third Adenylation Domain Of The Fungal Sidn Non | 3e-04 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 5e-04 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 5e-04 |
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 1e-45
Identities = 109/518 (21%), Positives = 179/518 (34%), Gaps = 62/518 (11%)
Query: 167 WLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANAL 226
P ++ N A L + + T A + TY EL E+ A+AL
Sbjct: 17 EAPPALFNFAA--YLFRLNETRAGKT-AYIDDTGS--------TTYGELEERARRFASAL 65
Query: 227 DTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
T+ + I + M TV + +L + AG V V + L S A+ +
Sbjct: 66 RTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVI 125
Query: 286 TQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 345
++ ++ L +A L P +++ + +
Sbjct: 126 ASGALV------QNVTQALESAEHDGCQLIVSQPRESEP--RLAPLFEELIDA-----AA 172
Query: 346 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH--IDLKVGDVYCWP 403
D + L+SSG+TG+PK T +++ TAE +A + + DV
Sbjct: 173 PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTH-ANLYWTAELYAKPILGIAENDVVFSA 231
Query: 404 TNLGWVMGP-VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT 462
L + G L GAT L P + + + TV VP+L +
Sbjct: 232 AKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVS 291
Query: 463 NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAYIQGSL 518
L IR S GE ++ + + I++ G TE+ ++ +
Sbjct: 292 PNLPARADVAIRICTSAGEALPR--EIG---ERFTAHFGCEILDGIGSTEMLHIFL-SNR 345
Query: 519 LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEV-----GLFPLYLGASDRLLNAD 573
+G + + DE G PD + VG++ +Y N +
Sbjct: 346 AGAVEYGTTGRPVPGYEIELRDEAGHAVPDGE--VGDLYIKGPSAAVMYWN------NRE 397
Query: 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 633
F G R GD R G + GR+DD + + G S VE+E V Q
Sbjct: 398 KSRATFLG-----EWI--RSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQ 450
Query: 634 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPD 671
+++LE A + V G FVVLK+ F
Sbjct: 451 -HDAVLEAAVVGVDHGGL--VKTRAFVVLKREFAPSEI 485
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 1e-40
Identities = 109/528 (20%), Positives = 181/528 (34%), Gaps = 82/528 (15%)
Query: 173 LNIAECCL---LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM 229
N A L K + A+ W + E ++EL E AN L
Sbjct: 37 FNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELM---WNFRELSENSQQAANVLSGA 93
Query: 230 F--SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 287
+GD +A+ +P ++ L I AG + + + +I RL++SKAK I
Sbjct: 94 CGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAG 153
Query: 288 DFILRGGRKFPLYSKVLGAAP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHP 343
D + +V A L+ +L V + L++K L+
Sbjct: 154 D---------EVIQEVDTVASECPSLRIKLL------VSEKSCDGWLNFKKLLNEA---- 194
Query: 344 RPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWP 403
+ V I F+SGT+G PK + S L+ D+
Sbjct: 195 -STTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTI 253
Query: 404 TNLGWVMGPV-ILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVPS----LVK 457
++ GW++ + L + GA ++ + K + + + P L++
Sbjct: 254 SDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQ 313
Query: 458 AWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTELSSAY 513
L + +++ + GE+ + + W I ES G TE +
Sbjct: 314 QD-----LSSYKFPHLQNCVTVGESLL--PETL---ENWRAQTGLDIRESYGQTE-TGLT 362
Query: 514 IQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE----------VGLFPLYL 563
S G TA + I+D+ G P G+ +G+F Y+
Sbjct: 363 CMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGT--EGDIGIRVKPIRPIGIFSGYV 420
Query: 564 GASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS 623
D+ + + GD + GY GRADD +N G +
Sbjct: 421 DNPDKTAANIRGDFWLL-------------GDRGIKDEDGYFQFMGRADDIINSSGYRIG 467
Query: 624 SVEIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQP 670
E+E +++ETA IS P G EV+ FVVL F S
Sbjct: 468 PSEVENAL-MEHPAVVETAVISSPDPVRG--EVVKAFVVLASQFLSHD 512
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 1e-37
Identities = 108/586 (18%), Positives = 191/586 (32%), Gaps = 92/586 (15%)
Query: 122 RLFQKFTVEHPEAYWEIALKEISVV---FREAPKCILDRTDKSKHGGTWLPGSVLNIAEC 178
H + + K ++ + F + + + L N A
Sbjct: 3 HHHHHHHHHHSSGHIDDDDKHMTSLLSQFVSKTD--FESYEDFQENFKILVPENFNFAYD 60
Query: 179 CLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIA 237
+ + R +A++W +D +E T+K+L+ AN KGD +
Sbjct: 61 VV--DVYARDSPEKLAMIWCDDYGNEKIF---TFKDLKYYSDKAANFFVKHGIGKGDYVM 115
Query: 238 IDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKF 297
+ + L + G + V R+I R+ + K I
Sbjct: 116 LTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIA----EDDVP 171
Query: 298 PLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFL-SSVDYHPRPNYYSPVYNPVD 356
+ +P VG + E + ++ L S RP D
Sbjct: 172 EQVDEAHAECG----DIPLKKAKVGGDVLEGWIDFRKELEESSPIFERPTGEVST-KNED 226
Query: 357 AVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCW-PTNLGWVMGP 412
+ + FSSGT G PK + L I TA+ W +++ ++ + + GW
Sbjct: 227 ICL-VYFSSGTAGFPKMVEHDNTYPLGHIL-TAKYW--QNVEDDGLH-YTVADSGWGKCV 281
Query: 413 V-ILFSSFLNGATLALYQGSPLE-RSFGKFVQDAGVTVLGTVP----SLVKAWRNTNCLE 466
L+ ++ G + +Y E ++ + GVT P L+K L
Sbjct: 282 WGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-----LS 336
Query: 467 GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA----IIESCGGTE--LSSAYIQGSLLQ 520
+++ ++ GE N +++ + ++E G TE ++ A +
Sbjct: 337 HYNFSTLKYAVVAGEPLN--PEVF---NRFLEFTGIKLMEGFGQTETVVTIATFPWMEPK 391
Query: 521 PQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGE----------VGLFPLYLGASDRLL 570
P G+ T + ++D G + GE VGLF Y +R
Sbjct: 392 P---GSIGKPTPGYKIELMDRDGRLCEVGE--EGEIVINTMEGKPVGLFVHYGKDPERTE 446
Query: 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERV 630
H+ Y GD+ GY+ GRADD + G K E+E
Sbjct: 447 ETWHDGYYHT-------------GDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESA 493
Query: 631 CDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPD 671
++LE A V P +V+ +VL K +T
Sbjct: 494 L-IQHPAVLECAITGV------PDPVRGQVIKATIVLTKDYTPSDS 532
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 9e-34
Identities = 151/631 (23%), Positives = 238/631 (37%), Gaps = 133/631 (21%)
Query: 107 PKLLGRAYKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRT-DKSKHGG 165
+ R +P +++ ++ P+ +W K + + + + + +
Sbjct: 11 ANIADRCLINPEQYETKYKQ-SINDPDTFWGEQGKILD--WITPYQKVKNTSFAPGNVSI 67
Query: 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANA 225
W LN+A CL H ++ + AI+W D +S ++Y+EL V AN
Sbjct: 68 KWYEDGTLNLAANCL--DRHLQENGDRTAIIWEGDDTSQSKH--ISYRELHRDVCRFANT 123
Query: 226 LDTM-FSKGDAIAIDMPMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATR 275
L + KGD +AI MPM A + LA +I G F+ +A
Sbjct: 124 LLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGG---------FSPEAVAGC 174
Query: 276 LRVSKAKGIFTQDFILRGGRKFPLYSKV-----LGAAPL--KAIVLPAIGNDVG-IPLRE 327
+ S ++ + T D +R GR PL V IVL G+D+ R
Sbjct: 175 IIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGR- 233
Query: 328 QDLSWKDFLSSVDYHPRPNYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCT 385
DL W+D + + P ++A + IL++SG+TG+PK + T T
Sbjct: 234 -DLWWRDLIEKA-----SPEHQPE--AMNAEDPLFILYTSGSTGKPKGVLHT-------T 278
Query: 386 AEG---WAHI------DLKVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLE 434
G +A D GD+Y W T ++GWV G +L+ GAT +++G P
Sbjct: 279 G-GYLVYAATTFKYVFDYHPGDIY-WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNW 336
Query: 435 RSFGKF---VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK------IRSFASTGETSNV 485
+ + V V +L T P+ ++A EG + +R S GE N
Sbjct: 337 PTPARMCQVVDKHQVNILYTAPTAIRALMA----EGDKAIEGTDRSSLRILGSVGEPIN- 391
Query: 486 DDDLWLSSKAWYNAIIESCGGTELSSAYI-----Q----GSLLQPQAFGAFSTATMTAGL 536
+ W WY I G + Q G ++ P GA +A
Sbjct: 392 -PEAWE----WYWKKI---GK---EKCPVVDTWWQTETGGFMITPLP-GAIELKAGSATR 439
Query: 537 -------VILDECGVPYPDDQPCVGEVGLFPLYLGASD------RLLNADHE---EVYFR 580
++D G P G L +D R L DHE + YF
Sbjct: 440 PFFGVQPALVDNEGHPQEG-----ATEG----NLVITDSWPGQARTLFGDHERFEQTYF- 489
Query: 581 GMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILE 640
+K M GD +R GY + GR DD +N+ G + + EIE A I E
Sbjct: 490 --STFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAE 544
Query: 641 TAAISVSPAGGGPEVLVIFVVLKKGFTSQPD 671
A + + A G + + +V L G P+
Sbjct: 545 AAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE 574
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-29
Identities = 93/418 (22%), Positives = 159/418 (38%), Gaps = 82/418 (19%)
Query: 126 KFTVEHPEAYW-EIALKEIS--VVFREAPKCILDRTDKSKHGGTWLPGSVLNIAECCLLP 182
K ++E P ++ A + ++ F + S W LN C+
Sbjct: 31 KESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCV-- 88
Query: 183 SNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF--SKGDAIAIDM 240
H K N AI++ D + +TYKEL E+V VA L KGD +A+ M
Sbjct: 89 DRHALKTPNKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYM 146
Query: 241 PMTVRAVIIYLA---------IILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
PM A+I LA ++ AG F++ + R+ +K + T D
Sbjct: 147 PMVPEAIITLLAISRIGAIHSVVFAG---------FSSNSLRDRINDGDSKVVITTDESN 197
Query: 292 RGGRKFPLYSKV---LGAAPL--KAIVLPAIGNDVGIPLRE-QDLSWKDFLSSVDYHPRP 345
RGG+ V L P +V N + +DL W
Sbjct: 198 RGGKVIETKRIVDDALRETPGVRHVLVYRKTNNP-SVAFHAPRDLDWATEKKKY-----K 251
Query: 346 NYYSPVYNPVDA--VVNILFSSGTTGEPKAIPWTQLSSIRCTAEG---WAHI------DL 394
YY PVD+ + +L++SG+TG PK + + TA G A + D
Sbjct: 252 TYYPCT--PVDSEDPLFLLYTSGSTGAPKGVQHS-------TA-GYLLGALLTMRYTFDT 301
Query: 395 KVGDVYCWPT-NLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVL 449
DV+ + ++GW+ G +++ L G +++G+P ++ ++ + + VT
Sbjct: 302 HQEDVF-FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQF 360
Query: 450 GTVPSLVKAWRNTNCLEGLDWTK------IRSFASTGETSNVDDDLWLSSKAWYNAII 501
P+ ++ + G + + +R S GE ++W WY+ I
Sbjct: 361 YVAPTALRLLKR----AGDSYIENHSLKSLRCLGSVGEPIA--AEVWE----WYSEKI 408
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 6e-26
Identities = 98/502 (19%), Positives = 165/502 (32%), Gaps = 91/502 (18%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251
+AI +Y+EL + +A + + D + + +P +
Sbjct: 42 IAITCGNTH--------WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIF 93
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP-LK 310
A+ G + V S + EI ++A D G L +V P LK
Sbjct: 94 ALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPD-AYSGFDYRSLARQVQSKLPTLK 152
Query: 311 AIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGE 370
I++ G E+ L +D + P V + S G+TG
Sbjct: 153 NIIV------AGEA--EEFLPLEDLHTEPVKLPEVKS--------SDVAFLQLSGGSTGL 196
Query: 371 PKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILFSSFLNGA 423
K IP T + S++ + E L VY N V+ G
Sbjct: 197 SKLIPRTHDDYIYSLKRSVEVC---WLDHSTVYLAALPMAHNYPLSSPGVL--GVLYAGG 251
Query: 424 TLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGET 482
+ L SP + +F ++ VT+ VP L W + D + ++ G
Sbjct: 252 RVVLSPSPSP-DDAF-PLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGG-- 307
Query: 483 SNVDDDLWLSSKAWYNAIIESC-GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVIL-- 539
+ + KA + ++ G E G + + T G +
Sbjct: 308 AKFSAEAARRVKAVFGCTLQQVFGMAE-------GLVNYTRLDDPEEIIVNTQGKPMSPY 360
Query: 540 DECGVPYPDDQPC-VGEVGLFPLYLGASDRLLNADHEEVYFRG---MPMYKGM------C 589
DE V D+ GE G + RG + Y
Sbjct: 361 DESRVWDDHDRDVKPGETG------------------HLLTRGPYTIRGYYKAEEHNAAS 402
Query: 590 LRRHG-----DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644
G DI++ T GYI+V+GRA D +N GG K ++ E+E A ++ + A +
Sbjct: 403 FTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL-LAHPAVHDAAMV 461
Query: 645 SV-SPAGGGPEVLVIFVVLKKG 665
S+ G E +F++ +
Sbjct: 462 SMPDQFLG--ERSCVFIIPRDE 481
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 9e-26
Identities = 101/523 (19%), Positives = 164/523 (31%), Gaps = 109/523 (20%)
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
R +++A++ E + ++Y+EL + +A +L G+ + +
Sbjct: 34 TRHAASDSIAVIDGERQ--------LSYRELNQAADNLACSLRRQGIKPGETALVQLGNV 85
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
I + A++ G V S E+ + + + L+S
Sbjct: 86 AELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADR-------QHALFSGD 138
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF 363
+I + D + ++++ +P P D V
Sbjct: 139 DFLNTFVT-EHSSIRVVQLLN----DSGEHNLQDAINHPAEDFTATPS--PADEVAYFQL 191
Query: 364 SSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILF 416
S GTTG PK IP T S+R + E Y N P L
Sbjct: 192 SGGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSS-PGSL- 246
Query: 417 SSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRS 475
FL G T+ L S F ++ V V VP V W
Sbjct: 247 GVFLAGGTVVLAADPSA-TLCF-PLIEKHQVNVTALVPPAVSLWLQ-------------- 290
Query: 476 FASTGETSNVDDDLWLSS-KAWYNAIIESCGGTELSSAYIQ------GSLLQPQAFGAFS 528
A S L+S K GG LS+ G LQ Q FG
Sbjct: 291 -ALIEGESRAQ----LASLKLLQ------VGGARLSATLAARIPAEIGCQLQ-QVFG--- 335
Query: 529 TATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEV----------- 577
M GLV + + G P+ + +A+ +
Sbjct: 336 ---MAEGLVN---YTRLDDSAEKIIHTQGY-PMCPDDEVWVADAEGNPLPQGEVGRLMTR 388
Query: 578 -------YFRGMPMYKGMCLRRHG-----DIIKRTVGGYIIVQGRADDTMNLGGIKTSSV 625
Y++ P + +G D+I GYI VQGR D +N GG K ++
Sbjct: 389 GPYTFRGYYK-SPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAE 447
Query: 626 EIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFT 667
EIE + +++ A +S+ G E ++V+K+
Sbjct: 448 EIENLLL-RHPAVIYAALVSMEDELMG--EKSCAYLVVKEPLR 487
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 47/279 (16%), Positives = 87/279 (31%), Gaps = 25/279 (8%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+Y E E+ + AL IA+ I +A + G V + +
Sbjct: 53 YSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYT 112
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
RE+ L +SK +F+ KV+ + + D
Sbjct: 113 LRELVHSLGISKPTIVFSSK---------KGLDKVITVQKTVTTIKTIVILD-SKVDYRG 162
Query: 329 DLSWKDFLS--SVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIR 383
F+ + ++ + + + V I+ SSG+TG PK + T ++
Sbjct: 163 YQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFS 222
Query: 384 CTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLER----SFGK 439
+ + G G + G + + L + +F K
Sbjct: 223 HARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVM-----LTKFDEETFLK 277
Query: 440 FVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
+QD T + VP+L + L D + + AS
Sbjct: 278 TLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIAS 316
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-25
Identities = 44/284 (15%), Positives = 91/284 (32%), Gaps = 35/284 (12%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+TY E E + +A A+ + I + +++ + L + G V D +
Sbjct: 51 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-----PLKAIVLPAIGNDVGI 323
RE+ + +S+ +F K+L K I++ + + G
Sbjct: 111 ERELLNSMNISQPTVVFVSK---------KGLQKILNVQKKLPIIQKIIIMDSKTDYQGF 161
Query: 324 PLREQDLSWKDFLSSVD--YHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ--- 378
S F++S ++ ++ + I+ SSG+TG PK +
Sbjct: 162 Q------SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTA 215
Query: 379 LSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLER--- 435
+ + G + G + L + R
Sbjct: 216 CVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVL-----MYRFEE 270
Query: 436 -SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
F + +QD + VP+L + + ++ D + + AS
Sbjct: 271 ELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIAS 314
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 1e-23
Identities = 49/299 (16%), Positives = 103/299 (34%), Gaps = 40/299 (13%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
AI+ E + M + E+ E +A+ + KG+ + + +P ++ V+
Sbjct: 34 EKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMT 93
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
A+ V I + + E+ L S+A + + + VL +
Sbjct: 94 IYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGV 147
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
+ + + + S + + S ++ + NP + V I ++ GTTG
Sbjct: 148 ERVFVVG----------GEVNSLSEVMDS----GSEDFENVKVNPEEDVALIPYTGGTTG 193
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSF-LNGATLALY 428
PK + T + + L D ++G + +F S L +
Sbjct: 194 MPKGVMLTHFNLAANALQLAVATGLSHMDT---------IVGCMPMFHSAEFGLVNLMVT 244
Query: 429 QGSPL-------ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFAS 478
G+ + + ++ T VP + NT + DW+ ++ FA+
Sbjct: 245 VGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFAT 303
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 4e-23
Identities = 51/269 (18%), Positives = 90/269 (33%), Gaps = 46/269 (17%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY ++ +A + ++ D + + +P V+ +LA G + F
Sbjct: 89 YTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFT 148
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
EIA + + S K I T+ K+ +V+ I ++ +P+ E
Sbjct: 149 PAEIAKQAKASNTKLIITEA---------RYVDKIKPLQNDDGVVIVCIDDNESVPIPEG 199
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLS-------S 381
L + + S V D VV + +SSGTTG PK + L+
Sbjct: 200 CLRFTELTQSTT--EASEVIDSVEISPDDVVALPYSSGTTGLPKGV---MLTHKGLVTSV 254
Query: 382 IRCTAEGWAHIDLKVGDVYCWPTNLGW-----VMGPVILFSSFLNGATLALYQGSPL--- 433
+ ++ DV L + +S + L G+ +
Sbjct: 255 AQQVDGENPNLYFHSDDVI-----LCVLPMFHIYA----LNSIMLC---GLRVGAAILIM 302
Query: 434 ----ERSFGKFVQDAGVTVLGTVPSLVKA 458
+ +Q VTV VP +V A
Sbjct: 303 PKFEINLLLELIQRCKVTVAPMVPPIVLA 331
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-22
Identities = 58/289 (20%), Positives = 95/289 (32%), Gaps = 41/289 (14%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYL 251
+AI+ E + ++Y EL +A L KGD + +P I++
Sbjct: 47 LAIICGERQ--------LSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF 98
Query: 252 AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA 311
A++ AG VV++ S E+ ++ + K + + ++S L
Sbjct: 99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSR-------QHEVFSNNQFIDSLHD 151
Query: 312 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP 371
V + + + + D D++ + P + P D V S G+TG P
Sbjct: 152 -VNLSPEIILMLNHQATDFGLLDWIET----PAETFVDFSSTPADEVAFFQLSGGSTGTP 206
Query: 372 KAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPT----NLGWVMGPVILFSSFLNGAT 424
K IP T S+R +AE L N G
Sbjct: 207 KLIPRTHNDYDYSVRASAEIC---GLNSNTRLLCALPAPHNFMLSSP--GALGVLHAGGC 261
Query: 425 LALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK 472
+ + P F +Q V + VPS V W LE K
Sbjct: 262 VVMAPNPEP-LNCF-SIIQRHQVNMASLVPSAVIMW-----LEKAAQYK 303
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 5e-21
Identities = 58/337 (17%), Positives = 125/337 (37%), Gaps = 60/337 (17%)
Query: 160 KSKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQV 219
+SK ++P + L + L + + ++ + + ++ TY ++
Sbjct: 10 RSKLPDIYIPKN-LPLHSYVL---ENLSNHSSKPCLI------NGANGDVYTYADVELTA 59
Query: 220 MLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRV 278
VA+ L+ + +GD I + +P + V+ +L G ++ + E+A +
Sbjct: 60 RRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKA 119
Query: 279 SKAKGIFTQDFILRGGRKFPLYSKVLGAA---PLKAIVLPAIGNDVGIPLREQDLSWKDF 335
S+AK + TQ Y KV A +K + + + + L + +
Sbjct: 120 SRAKLLITQA---------CYYEKVKDFARESDVKVMCVDSAPDGC--------LHFSEL 162
Query: 336 LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWA-H 391
+ + +P D V + +SSGTTG PK + T ++S+ +G +
Sbjct: 163 TQADENEAPQ----VDISPDDVVA-LPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPN 217
Query: 392 IDLKVGDVYCWPTNLGW-----VMG-PVILFSSFLNGATLALYQGSPLER----SFGKFV 441
+ DV L + I+ GA + + + + S +
Sbjct: 218 LYFHSEDVI-----LCVLPMFHIYALNSIMLCGLRVGAPILI-----MPKFEIGSLLGLI 267
Query: 442 QDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFAS 478
+ V++ VP ++ + + L+ D + +R S
Sbjct: 268 EKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKS 304
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 4e-20
Identities = 82/505 (16%), Positives = 161/505 (31%), Gaps = 101/505 (20%)
Query: 193 VAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVIIYLA 252
+AI ++ TY+ L + L+A L + + + + +++++I+ A
Sbjct: 18 IAITDGQES--------YTYQNLYCEASLLAKRL--KAYQQSRVGLYIDNSIQSIILIHA 67
Query: 253 IILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAI 312
LA + I E+ ++R + IF PL + L I
Sbjct: 68 CWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTL---------PLELRGFQIVSLDDI 118
Query: 313 VLPAIGNDV-GIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEP 371
G+ + + +V P+ +D + +I+F+SGTTG
Sbjct: 119 EFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQ 178
Query: 372 KAIPWTQLSSIRCTAEGWA-HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 430
KA+P T + +A G + + + + G +L + + G T+ +
Sbjct: 179 KAVPQTF-RNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDK 237
Query: 431 SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLW 490
E+ +++ +T + VP + + ++ G + + +
Sbjct: 238 FNAEQIL-TMIKNERITHISLVPQTLNWLMQQ---GLHEPYNLQKILLGG--AKLSATMI 291
Query: 491 LSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP--- 547
++ + I S G TE S Q P+ D G+P
Sbjct: 292 ETALQYNLPIYNSFGMTETCS---QFLTATPE-----------MLHARPDTVGMPSANVD 337
Query: 548 ----DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG---MPMYKGMCLRR-------- 592
+ G E+ +G M Y L
Sbjct: 338 VKIKNPNK--EGHG------------------ELMIKGANVMNGY----LYPTDLTGTFE 373
Query: 593 ----H-GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647
+ GDI + GY+++ R D + GG +IE V Q I + +
Sbjct: 374 NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQ-FPGISDAVCV--- 429
Query: 648 PAGGGP-----EVLVIFVVLKKGFT 667
G P +V ++ V + +
Sbjct: 430 ---GHPDDTWGQVPKLYFVSESDIS 451
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 5e-19
Identities = 100/533 (18%), Positives = 157/533 (29%), Gaps = 124/533 (23%)
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
NI + A V D MTY ++ A+ L + +
Sbjct: 16 KNIGW---MLRQRATVSPRLQAYVEPST--DVR----MTYAQMNALANRCADVLTALGIA 66
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
KGD +A+ MP +V ++ G V V I AA E++ L S +K +
Sbjct: 67 KGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA 126
Query: 292 RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
P+ + A V IG D S + L S
Sbjct: 127 ------PVIDAIRAQADPPGTVTDWIGAD----------SLAERLRSAAADEPAVECGG- 169
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 411
D + I+++SGTTG PK + T S + + ID++ D +
Sbjct: 170 ----DDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLL-------LPL 218
Query: 412 PVILFSSF-LNGATLALYQGSP--LERSFG-----KFVQDAGVTVLGTVPSLVKAWRNTN 463
P +F L + +G F + + V + G VP+++ R
Sbjct: 219 P--MFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVP 276
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA 523
LD R F + G + + + L A +++ TE G+LL +
Sbjct: 277 EFAELDAPDFRYFITGG--APMPEALIKIYAAKNIEVVQGYALTESCGG---GTLLLSE- 330
Query: 524 FGAFSTATMTAGLVILDECGVPYP---------DDQPCVGEVGLFPLYLGASDRLLNADH 574
L G D G
Sbjct: 331 ----------DALRKAGSAGRATMFTDVAVRGDDGVIREHGEG----------------- 363
Query: 575 EEVYFRG---MPMYKGMCLRR-------------H-GDIIKRTVGGYIIVQGRADDTMNL 617
EV + + Y R GDI + GY+ ++ R D +
Sbjct: 364 -EVVIKSDILLKEY----WNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIIS 418
Query: 618 GGIKTSSVEIERVCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKG 665
GG EIE V + E A I + P E+ VV +
Sbjct: 419 GGENVYPAEIESVIIGVPG-VSEVAVIGL------PDEKWGEIAAAIVVADQN 464
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 3e-18
Identities = 79/531 (14%), Positives = 148/531 (27%), Gaps = 107/531 (20%)
Query: 173 LNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FS 231
+A+ + + + A + R +T+++ + +A+ L
Sbjct: 6 FTLAD---VYRRNAALFPDRTAFMVDGVR--------LTHRDYLARAERLASGLLRDGVH 54
Query: 232 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 291
GD +AI + + A+ L G +++ + A EIA L +
Sbjct: 55 TGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR 114
Query: 292 RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPV 351
+ + VL + + + + F P
Sbjct: 115 ------DIVAGVLPSLGGVKKA---------YAIGDGSGPFAPFKDLASDTPFS----AP 155
Query: 352 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG 411
I+ ++ G P+ +Q + + + L DV L V G
Sbjct: 156 EFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTG 215
Query: 412 PVILFSSFLNGATLALYQGSPLERSFG-----KFVQDAGVTVLGTVPSLVKAWRNTNCLE 466
++ + G + F + ++ VTV+ ++ +
Sbjct: 216 LGLMLTLQQAGGASV------IAAKFDPAQAARDIEAHKVTVMAEFAPML--GNILDQAA 267
Query: 467 GLDWTKIRSFASTG--ETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQA 523
+R+ ET + NA + G +E S + +
Sbjct: 268 PAQLASLRAVTGLDTPET------IERFEATCPNATFWATFGQSETSGL---STFAPYRD 318
Query: 524 -FGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG- 581
+ + ++D P P GEVG E+ RG
Sbjct: 319 RPKSAGRPLFWRTVAVVDAEDRPLP-----PGEVG------------------EIVLRGP 355
Query: 582 --MPMYKGM------CLR----RHGDIIKRTVGGYIIVQGRAD--DTMNLGGIKTSSVEI 627
Y R GD+ + GY+ GRA + + GG E+
Sbjct: 356 TVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEV 415
Query: 628 ERVCDQADESILETAAISVSPAGGGP-----EVLVIFVVLKKGFTSQPDKL 673
E Q +I + I V P E + V K G + D L
Sbjct: 416 EGALKQ-HPAIADAVVIGV------PDPQWSEAIKAVCVCKPGESIAADAL 459
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 3e-18
Identities = 53/305 (17%), Positives = 93/305 (30%), Gaps = 51/305 (16%)
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
+ + + +AI ++Y EL + VAN L GD +A +
Sbjct: 11 DKLDDPHKLAIETAAGDK-------ISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS 63
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
V A+++YLA + AG V + + ++ E+ + ++ K + K + +
Sbjct: 64 VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDP------SKRDGIAAI 117
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF 363
L G S D + D + IL+
Sbjct: 118 AAKVGATVETLGPDG----------RGSLTDAAAGASEAFATIDRGA-----DDLAAILY 162
Query: 364 SSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNL----GWVMGPVILF 416
+SGTTG K + S+ + W DV + G +
Sbjct: 163 TSGTTGRSKGAMLSHDNLASNSLTLVDYW---RFTPDDVLIHALPIYHTHGLFVA---SN 216
Query: 417 SSFLNGATLALYQGSPLERSF--GKFVQD-AGVTVLGTVPSLVKAWRNTNCLEGLDWTKI 473
+ ++ F K + A TVL VP+ + L +
Sbjct: 217 VTLFARGSMI------FLPKFDPDKILDLMARATVLMGVPTFYTRLLQSPRLTKETTGHM 270
Query: 474 RSFAS 478
R F S
Sbjct: 271 RLFIS 275
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 5e-15
Identities = 92/520 (17%), Positives = 151/520 (29%), Gaps = 125/520 (24%)
Query: 181 LPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDM 240
L + A+ + E +TY EL A + +A+
Sbjct: 28 LSPAPTGAPADRPALRFGERS--------LTYAELAAAAGATAGRI----GGAGRVAVWA 75
Query: 241 PMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT-QDFILRGGRKFPL 299
+ + +A +LAG V + +E+A L S + D L
Sbjct: 76 TPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPA----- 130
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
LGA + + A G + D +
Sbjct: 131 ----LGALERVDVDVRARGAVPEDGADDGDPAL--------------------------- 159
Query: 360 NILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNL----GWVMGP 412
++++SGTTG PK + +++ A+ W DV L G V+G
Sbjct: 160 -VVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLG- 214
Query: 413 VILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL---D 469
+ G ++ E + + + G T+L VP++ T +
Sbjct: 215 --ILGPLRRGGSVRHLGRFSTEGAAREL--NDGATMLFGVPTMYHRIAETLPADPELAKA 270
Query: 470 WTKIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFS 528
R S + + A +IE G TE + +P+A G
Sbjct: 271 LAGARLLVSGS--AALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRA-G--- 324
Query: 529 TATMTAGLV-------ILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRG 581
T G+ +++E G P VG E+ RG
Sbjct: 325 ----TVGVPLPGVELRLVEEDGTPIAALDG--ESVG------------------EIQVRG 360
Query: 582 ---MPMYKGM------CLRRHG-----DIIKRTVGGYIIVQGRAD-DTMNLGGIKTSSVE 626
Y G D+ R GY+ + GR D + GG K + E
Sbjct: 361 PNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGE 420
Query: 627 IERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKG 665
IE + E A P G E +V ++V
Sbjct: 421 IENALL-EHPEVREAAVTGEPDPDLG--ERIVAWIVPADP 457
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 8e-14
Identities = 45/252 (17%), Positives = 81/252 (32%), Gaps = 37/252 (14%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ ELR +V VA L +A+ P + VI LA+ G V +
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
+ E+A ++ + + + + I+ + +
Sbjct: 90 SAELAELIKRGEMTAAVIAV-------GRQVADAIFQSGSGARIIFLG-----DLVRDGE 137
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 388
S+ + P I ++SGTTG PKA Q ++
Sbjct: 138 PYSYGPPIEDPQREP------------AQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFM 185
Query: 389 WAHIDLKVG--DVYCWPTNL----GWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFV 441
+ L+ G +V L G+ L ++ T + + P++ + V
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHVVGFFAV---LVAALALDGTYVVVEEFRPVD--ALQLV 240
Query: 442 QDAGVTVLGTVP 453
Q VT L P
Sbjct: 241 QQEQVTSLFATP 252
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 6e-12
Identities = 74/477 (15%), Positives = 136/477 (28%), Gaps = 167/477 (35%)
Query: 10 VEDLMKVGLKLEEAEEFDKILKQVISCSKGLDAREIW------RELVARKVLKPWHPHGL 63
V+D+ K L EE D I+ + S L R W E+V + V +
Sbjct: 38 VQDMPKSILS---KEEIDHIIMSKDAVSGTL--RLFWTLLSKQEEMVQKFV------EEV 86
Query: 64 HQLVYYSVYNDWDASIKGPPLYWFPSLDQSKLTNLGNALEIHGPKLLGRAYKDPITSFRL 123
++ Y + + + P S+ + R Y D ++
Sbjct: 87 LRINYKFLMSPIKTEQRQP------SMMTRMYIEQRD-----------RLYNDN----QV 125
Query: 124 FQKFTVEHPEAYWEI--ALKEISVVFREAPKCILDRTDKSKHG--G---TWLPGSV---- 172
F K+ V + Y ++ AL E+ R A ++ G G TW+ V
Sbjct: 126 FAKYNVSRLQPYLKLRQALLEL----RPAKNVLI-------DGVLGSGKTWVALDVCLSY 174
Query: 173 ------------LNIAECC--------------LLPSNHRRKEDNTVAIVWREDRCDESA 206
LN+ C + N + D++ I R
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 207 VNLMTYKELREQVMLVANALDTMFSKGDAIAIDMP----MTVRAVIIYLAIILAGYVVVS 262
L+ K +LV L + + A ++ +T R
Sbjct: 235 RRLLKSKPYEN-CLLV---LLNVQNAKAWNAFNLSCKILLTTRF--------------KQ 276
Query: 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLP--AIGND 320
+ D +A T + + T D + L K L P LP +
Sbjct: 277 VTDFLSA-ATTTHISLDHHSMTLTPDEVKS------LLLKYLDCRPQD---LPREVLT-- 324
Query: 321 VGIPL---------REQDLSWKDFL------------SSVDYHPRPNYYSPVYN-----P 354
P R+ +W ++ SS++ P Y +++ P
Sbjct: 325 -TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFP 382
Query: 355 VDA-----VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA----------HIDLKV 396
A ++++++ + + E +++LKV
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKV 437
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 53/261 (20%), Positives = 92/261 (35%), Gaps = 50/261 (19%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
TY E+ ++ + L + GD +A R + Y A+ G V+ + +
Sbjct: 48 TTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLS 107
Query: 269 AREIATRLRVSKAKGIFT-QDFILRGGRKFPLYSKVLGAAP-LKAIVLPAIGNDVGIPLR 326
+EIA L ++ K + + + PL + G ++ V +
Sbjct: 108 PKEIAYILNHAEDKVLLFDPNLL-------PLVEAIRGELKTVQHFV------VMDEKAP 154
Query: 327 EQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ----LSSI 382
E L++++ L R P A + +++GTTG PK + ++ L S+
Sbjct: 155 EGYLAYEEALGEEADPVRV--------PERAACGMAYTTGTTGLPKGVVYSHRALVLHSL 206
Query: 383 R-CTAEGWAHIDLKVGDVYCWPT-----NLGWVMGPVILFSSFLNGATLAL----YQGSP 432
+G A L DV N W + P +++ L GA L +
Sbjct: 207 AASLVDGTA---LSEKDVVLPVVPMFHVN-AWCL-P---YAATLVGAKQVLPGPRLDPAS 258
Query: 433 LERSFGKFVQDAGVTVLGTVP 453
L GVT VP
Sbjct: 259 LVE----LFDGEGVTFTAGVP 275
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 38/250 (15%), Positives = 76/250 (30%), Gaps = 40/250 (16%)
Query: 191 NTVAIVWREDRCD-ESAVNLMTYKELREQVMLVANALDTMFSKGDAIAIDMPMTVRAVII 249
+ A + + D + +T+ +L + + VA L S GD + I P + V+
Sbjct: 39 HDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGSTGDRVVISAPQGLEYVVA 98
Query: 250 YLAIILAGYVVVSIA--DSFAARE-IATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA 306
+L + AG + V ++ E + L S I T + + ++ G
Sbjct: 99 FLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH--VARRPGE 156
Query: 307 APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSG 366
+P I + + D + + ++SG
Sbjct: 157 SPPSIIEVDLLDLDAP-------------NGYTFKEDEY----------PSTAYLQYTSG 193
Query: 367 TTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWPTNLGW-----VMGPV-ILFS 417
+T P + + + G+ + + W MG V + +
Sbjct: 194 STRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPN--SALVSWLPFYHDMGLVIGICA 251
Query: 418 SFLNGATLAL 427
L G L
Sbjct: 252 PILGGYPAVL 261
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 4e-07
Identities = 30/209 (14%), Positives = 71/209 (33%), Gaps = 37/209 (17%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
N + + +E+ MTY++L + +A L GD + + + +
Sbjct: 26 NKKSCTFLNKELEET----MTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQA 81
Query: 250 YLAIILAGYVVVSIA----DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLG 305
+L + AG + V I + + + SK + ++ + L
Sbjct: 82 FLGCLYAGCIAVPIYPPAQEKLLDK-AQRIVTNSKPVIVLMIADHIKK-----FTADELN 135
Query: 306 AAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSS 365
P K + +PAI + S++ + ++ + + + ++S
Sbjct: 136 TNP-KFLKIPAIALE-----------------SIELNRSSSWQPTSIKS-NDIAFLQYTS 176
Query: 366 GTTGEPKAIPWTQ---LSSIRCTAEGWAH 391
G+T PK + + L ++ +
Sbjct: 177 GSTMHPKGVMVSHHNLLDNLNKIFTSFHM 205
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 65/370 (17%), Positives = 118/370 (31%), Gaps = 90/370 (24%)
Query: 354 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI----DLKVGDVYCWPTNLGWV 409
P + VV + SSGTTG+P + +T I A A + GD G
Sbjct: 90 PREQVVRVHASSGTTGKPTVVGYTA-RDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLF 148
Query: 410 MGPVILFSSFLN-GATLALYQGSPLERSFGKFVQDAGVTVLGTVPS----LVKAWRNTNC 464
G + + G + G E+ + ++D ++ PS L+
Sbjct: 149 TGGLGIHYGAERLGCMVVPMSGGQTEKQV-QLIRDFEPKIILVTPSYMLNLIDEMVR--- 204
Query: 465 LEGLDW--TKIRSFASTGETSNVDDDLWLSSKAWYNAI---IESCGGTELSSAYIQGSLL 519
+G+D + ++ E W A+ +E+ G + Y ++
Sbjct: 205 -QGMDPAESSLKIGIFGAE-------------PWTQALRNEVETRVGIDALDIYGLSEVM 250
Query: 520 QPQAFGAFSTATMTAGLV---------ILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRL 569
P A G V I+D G PD G G
Sbjct: 251 GP--GVACECVETKDGPVIWEDHFYPEIIDPVTGEVLPD-----GSQG------------ 291
Query: 570 LNADHEEVY----FRGMPMYKGMCLR-RHGDIIK---------RTVGGYIIVQGRADDTM 615
E V+ MP+ +R R D+ R + + GR+DD +
Sbjct: 292 -----ELVFTSLTKEAMPV-----IRYRTRDLTALLPPTARAMRRLAK---ITGRSDDML 338
Query: 616 NLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKM 675
+ G+ +IE + + I++S G + + + + S D +
Sbjct: 339 IVRGVNVFPSQIEEIVVALPL-LSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERA 397
Query: 676 IFSKAIQSKL 685
++ +Q ++
Sbjct: 398 ALARELQHRI 407
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 693 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 1e-71 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 3e-62 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 1e-39 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 7e-38 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 2e-35 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 2e-29 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 1e-25 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 242 bits (619), Expect = 1e-71
Identities = 134/587 (22%), Positives = 231/587 (39%), Gaps = 44/587 (7%)
Query: 126 KFTVEHPEAYWEIALKEISVVFREAPKCILDRT-DKSKHGGTWLPGSVLNIAECCLLPSN 184
K ++ P+ +W K + + + + + + W LN+A CL
Sbjct: 25 KQSINDPDTFWGEQGKILD--WITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCL--DR 80
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
H ++ + AI+W D +S ++Y+EL V AN L + KGD +AI MPM
Sbjct: 81 HLQENGDRTAIIWEGDDTSQSKH--ISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMV 138
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
A + LA G V I F+ +A + S ++ + T D +R GR PL V
Sbjct: 139 PEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNV 198
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSW---KDFLSSVDYHPRPNYYSPVYNPVDAVVN 360
A LK + ++ + + + D+ W +D + P + +
Sbjct: 199 DDA--LKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLF 256
Query: 361 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMGPV-ILFSS 418
IL++SG+TG+PK + T + A + ++ D GD+Y ++GWV G +L+
Sbjct: 257 ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGP 316
Query: 419 FLNGATLALYQGSPLERS---FGKFVQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTKI 473
GAT +++G P + + V V +L T P+ ++A +EG D + +
Sbjct: 317 LACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSL 376
Query: 474 RSFASTGETSNVDDDLWLSSK--AWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT 531
R S GE N + W K ++++ TE + ++ L A S
Sbjct: 377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE-TGGFMITPLPGAIELKAGSATR 435
Query: 532 MTAG--LVILDECGVPYPDDQP---CVGE--VGLFPLYLGASDRLLNADHEEVYFRGMPM 584
G ++D G P + + G G +R E+ YF
Sbjct: 436 PFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERF-----EQTYFSTFKN 490
Query: 585 YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAI 644
GD +R GY + GR DD +N+ G + + EIE A I E A +
Sbjct: 491 M-----YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL-VAHPKIAEAAVV 544
Query: 645 SVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 691
+ A G + + +V L G P+ + ++ ++
Sbjct: 545 GIPHAIKG-QAIYAYVTLNHGEEPSPELYAEV-RNWVRKEI-GPLAT 588
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 217 bits (553), Expect = 3e-62
Identities = 117/562 (20%), Positives = 212/562 (37%), Gaps = 27/562 (4%)
Query: 126 KFTVEHPEAYWEIALKEISVVFREAPKCILDRTDKSKH----GGTWLPGSVLNIAECCLL 181
K ++E P ++ + + + + + K+ W LN C+
Sbjct: 8 KESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCV- 65
Query: 182 PSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTMF--SKGDAIAID 239
H K N AI++ D + +TYKEL E+V VA L KGD +A+
Sbjct: 66 -DRHALKTPNKKAIIFEGDEPGQGYS--ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVY 122
Query: 240 MPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL 299
MPM A+I LAI G + + F++ + R+ +K + T D RGG+
Sbjct: 123 MPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIET 182
Query: 300 YSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVV 359
V A V + + +D + + YY + +
Sbjct: 183 KRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPL 242
Query: 360 NILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYCWPTNLGWVMGPV-ILFS 417
+L++SG+TG PK + + + + D DV+ ++GW+ G +++
Sbjct: 243 FLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYG 302
Query: 418 SFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVPSLVKAWRNTN--CLEGLDWTK 472
L G +++G+P ++ ++ + + VT P+ ++ + +E
Sbjct: 303 PLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKS 362
Query: 473 IRSFASTGETSNVDDDLWLSSK--AWYNAIIESCGGTELSSAYIQ--GSLLQPQAFGAFS 528
+R S GE + W S K I+++ TE S + + P G+ S
Sbjct: 363 LRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSAS 422
Query: 529 TATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGM 588
V+LD + G + + + + + +H+ + Y G
Sbjct: 423 FPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWK-NHDRYLDTYLNPYPGY 481
Query: 589 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSP 648
GD + GYI + GR DD +N+ G + S+ EIE D + E A + +
Sbjct: 482 Y--FTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAI-IEDPIVAECAVVGFND 538
Query: 649 AGGGPEVLVIFVVLKKGFTSQP 670
G + + FVVLK +
Sbjct: 539 DLTG-QAVAAFVVLKNKSSWST 559
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 151 bits (381), Expect = 1e-39
Identities = 93/508 (18%), Positives = 158/508 (31%), Gaps = 57/508 (11%)
Query: 185 HRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMT 243
+ TY E+ ++ + L + GD +A
Sbjct: 20 AAALFGRKEVVSRLHTGEVHR----TTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNH 75
Query: 244 VRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV 303
R + Y A+ G V+ + + +EIA L ++ K + +L
Sbjct: 76 FRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------------ 123
Query: 304 LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILF 363
++AI + + E+ PV P A + +
Sbjct: 124 ---PLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEAD----PVRVPERAACGMAY 176
Query: 364 SSGTTGEPKA--IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421
++GTTG PK L A L DV + V + +++ L
Sbjct: 177 TTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLV 236
Query: 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGE 481
GA L S + GVT VP++ A + G +R G
Sbjct: 237 GAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGS 296
Query: 482 TSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ---GSLLQPQAFGAFSTATMTAG--- 535
+ + + + G TE S +Q S L+ + T G
Sbjct: 297 AAPRSLIARF--ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPI 354
Query: 536 ----LVILDECGVPYPDDQPCVGEV-----GLFPLYLGASDRLLNADHEEVYFRGMPMYK 586
L + DE G P P D +GEV + Y G + +A + +F
Sbjct: 355 PLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFF------- 407
Query: 587 GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV 646
R GDI GY+ ++ R D + GG SSV++E + E A +++
Sbjct: 408 -----RTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENAL-MGHPKVKEAAVVAI 461
Query: 647 SPAGGGPEVLVIFVVLKKGFTSQPDKLK 674
E + VV + + + +
Sbjct: 462 PHPKWQ-ERPLAVVVPRGEKPTPEELNE 488
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 146 bits (368), Expect = 7e-38
Identities = 81/532 (15%), Positives = 166/532 (31%), Gaps = 42/532 (7%)
Query: 168 LPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALD 227
P E L +R I + + + + +TY E E + +A A+
Sbjct: 12 YPLEDGTAGE--QLHKAMKRYALVPGTIAFTDAHIEVN----ITYAEYFEMSVRLAEAMK 65
Query: 228 TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT 286
+ I + +++ + L + G V D + RE+ + +S+ +F
Sbjct: 66 RYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV 125
Query: 287 QDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN 346
L+ ++ K I++ + + G ++ +Y P
Sbjct: 126 SKKGLQKILNVQKKLPIIQ----KIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVP- 180
Query: 347 YYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGDVYCWP 403
++ + I+ SSG+TG PK + + +
Sbjct: 181 ---ESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSV 237
Query: 404 TNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN 463
G + G + L E F + +QD + VP+L + +
Sbjct: 238 VPFHHGFGMFTTLGYLICGFRVVLMYRFEEEL-FLRSLQDYKIQSALLVPTLFSFFAKST 296
Query: 464 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQA 523
++ D + + AS G + + ++ + I + G TE +SA + +
Sbjct: 297 LIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL-ITPEGDDK 355
Query: 524 FGAFSTATMTAGLVILD-ECGVPYPDDQP---CVGEVGLFPLYLGASDRLLNADHEEVYF 579
GA ++D + G +Q CV + Y+ N +
Sbjct: 356 PGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVN------NPEATNALI 409
Query: 580 RGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL 639
GDI + + R + G + + E+E + Q I
Sbjct: 410 DKDGWL------HSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPN-IF 462
Query: 640 ETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV 691
+ + G E+ VVL+ G T ++ + S++ K+
Sbjct: 463 DAGVAGLPDDDAG-ELPAAVVVLEHGKTMTEKEIV----DYVASQVTTAKKL 509
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 138 bits (348), Expect = 2e-35
Identities = 82/485 (16%), Positives = 152/485 (31%), Gaps = 59/485 (12%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
N VAIV ++ +TY EL + +A K + I M ++ I
Sbjct: 38 NNVAIVCENEQ--------LTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIG 89
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
LA++ AG V I + I L S+A+ + TQ ++
Sbjct: 90 ILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVH----------------- 132
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
++ I + + + E+D R V + + ++++SGTTG
Sbjct: 133 ---LIHNIQFNGQVEIFEED----------TIKIREGTNLHVPSKSTDLAYVIYTSGTTG 179
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 429
PK +++ D ++ + +F + L GA+L +
Sbjct: 180 NPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIIL 239
Query: 430 GSPLE--RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDD 487
+ F +++ +TV+ L+ I++ + G ++
Sbjct: 240 KDTINDFVKFEQYINQKEITVITLP------PTYVVHLDPERILSIQTLITAGSATSPSL 293
Query: 488 DLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYP 547
K Y T ++ ++ + I+DE
Sbjct: 294 VNKWKEKVTYINAYGPTETTICATTWVATK-ETIGHSVPIGAPIQNTQIYIVDENLQLKS 352
Query: 548 DDQP---CVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGY 604
+ C+G GL Y + F P G L + GD + G
Sbjct: 353 VGEAGELCIGGEGLARGYWK------RPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGN 406
Query: 605 IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKK 664
I GR D+ + + G + E+E + I ETA L + V +K
Sbjct: 407 IEYLGRIDNQVKIRGHRVELEEVESIL-LKHMYISETAVSVHKDHQEQ-PYLCAYFVSEK 464
Query: 665 GFTSQ 669
+
Sbjct: 465 HIPLE 469
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 121 bits (303), Expect = 2e-29
Identities = 82/484 (16%), Positives = 148/484 (30%), Gaps = 39/484 (8%)
Query: 191 NTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII 249
+ +AI +Y+EL + +A + + D + + +P +
Sbjct: 40 DRIAITCGNTH--------WSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEV 91
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 309
A+ G + V S + EI ++A D A
Sbjct: 92 IFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG--------FDYRSLARQ 143
Query: 310 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTG 369
LP + N + E+ L +D + P + + S G+TG
Sbjct: 144 VQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAF--------LQLSGGSTG 195
Query: 370 EPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMG-PVILFSSFLNGATLALY 428
K IP T I L VY + L +
Sbjct: 196 LSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255
Query: 429 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDD 488
SP ++ VT+ VP L W + D + ++ G + +
Sbjct: 256 SPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAA 315
Query: 489 LWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA-TMTAGLVILDECGVPYP 547
+ + + + + G E Y + + + + D+
Sbjct: 316 RRVKAV-FGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVK 374
Query: 548 DDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 607
GE G L + E + G R GDI++ T GYI+V
Sbjct: 375 P-----GETGH--LLTRGPYTIRGYYKAEEHNAASFTEDGFY--RTGDIVRLTRDGYIVV 425
Query: 608 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT 667
+GRA D +N GG K ++ E+E A ++ + A +S+ G E +F++ +
Sbjct: 426 EGRAKDQINRGGEKVAAEEVENHL-LAHPAVHDAAMVSMPDQFLG-ERSCVFIIPRDEAP 483
Query: 668 SQPD 671
+
Sbjct: 484 KAAE 487
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 108 bits (271), Expect = 1e-25
Identities = 81/470 (17%), Positives = 132/470 (28%), Gaps = 42/470 (8%)
Query: 210 MTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA 268
+T+ ELR +V VA L +A+ P + VI LA+ G V +
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ 328
+ E+A ++ + A + G+ I
Sbjct: 90 SAELAELIKRGEMTAAVIAV------------------GRQVADAIFQSGSGARIIFLGD 131
Query: 329 DLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAI--PWTQLSSIRCTA 386
+ + S P I ++SGTTG PKA P S
Sbjct: 132 LVRDGEPYSYGPPIEDPQR------EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFM 185
Query: 387 EGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGV 446
+ +V L V+G + + L + + VQ V
Sbjct: 186 STQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQV 245
Query: 447 TVLGTVPSLVKAWRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 504
T L P+ + A G L +R G T + D + + +
Sbjct: 246 TSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGAT--MPDAVLETVHQHLPGEKVNI 303
Query: 505 GGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLG 564
GT + + + A + + I + + V
Sbjct: 304 YGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFV 363
Query: 565 ASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 624
A E + + G + + GR DD + GG
Sbjct: 364 GYLNQPQATAE--KLQDGWYRTSDVAVWTPE-------GTVRILGRVDDMIISGGENIHP 414
Query: 625 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLK 674
EIERV A + E I ++ G + + VV + G T D L
Sbjct: 415 SEIERVLGTAPG-VTEVVVIGLADQRWG-QSVTACVVPRLGETLSADALD 462
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 693 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1l5aa2 | 250 | VibH {Vibrio cholerae [TaxId: 666]} | 98.46 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 95.27 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=0 Score=660.43 Aligned_cols=557 Identities=25% Similarity=0.366 Sum_probs=452.7
Q ss_pred CCCCHHHHHHHHHHCHHHHHHHHHHHCCCCEECCCEEECCCCCC-CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEEE
Q ss_conf 98788899999825999999999854552033066020138888-89999869899540632301676667899994799
Q 005501 117 PITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK-SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVAI 195 (693)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al 195 (693)
.+.+|+.++++|++++..||..+++. ..|.+++..+++.... .....+||+++.+|++++++++|. +.+||++|+
T Consensus 16 ~~~~y~~l~~~s~~~~~~fW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~N~~~n~ldrh~--~~~~d~~Al 91 (643)
T d1pg4a_ 16 NPEQYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHL--QENGDRTAI 91 (643)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGH--HHHTTSEEE
T ss_pred CHHHHHHHHHHHHHCHHHHHHHHHHH--EEEECCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHH--HHCCCCEEE
T ss_conf 99999999999971999999999865--05877982015676699987773698971319999999999--749998799
Q ss_pred EEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHH
Q ss_conf 9943788888621540999999999999999860-699999999849999999999999990768984389999999999
Q 005501 196 VWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIAT 274 (693)
Q Consensus 196 ~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~~lA~~~aG~~~vpl~~~~~~~~l~~ 274 (693)
++.+. +++..+++||+||.++++++|++|+++ +++||+|+++++|++++++++|||+++|++++|+++.++.+++.+
T Consensus 92 i~~~~--~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~~~~~l~~ 169 (643)
T d1pg4a_ 92 IWEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAG 169 (643)
T ss_dssp EEECS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHH
T ss_pred EEEEC--CCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCEEEEECCCCCCHHHHHH
T ss_conf 99736--9998569709999999999999999729899999999515444899999999985959993188899999999
Q ss_pred HHHHCCEEEEEEECCEEECCCCCCCHHHHHHCC-------CCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCC
Q ss_conf 998419059996064210795245436673008-------9835998187888888777776637887301699999998
Q 005501 275 RLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAA-------PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (693)
Q Consensus 275 ~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (693)
++++++++++|+++......+............ ...++++.......... ......+.+....... .
T Consensus 170 ~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~ 243 (643)
T d1pg4a_ 170 CIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLIEKASP-----E 243 (643)
T ss_dssp HHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCC-BTTEEEHHHHHTTSCS-----C
T ss_pred HHHHCCCCEEEECCHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC-CCCCHHHHHHHCCCCC-----C
T ss_conf 998559989998431443133321034478887244556640799964677655644-4420133443202575-----4
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHH-HHHHCHHCCCCCCCEEEEECCCCCCCHH-HHHHHHHHCCCEE
Q ss_conf 8876689999279991469989866589535068999-9873041378889899982786200225-8879888709789
Q 005501 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRC-TAEGWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATL 425 (693)
Q Consensus 348 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~-~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~l 425 (693)
..+....++++++|+|||||||.||||+++|++++.. .......++++++|++++.+|++|++++ +.++.+|+.|+++
T Consensus 244 ~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~ 323 (643)
T d1pg4a_ 244 HQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATT 323 (643)
T ss_dssp CCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEE
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCEE
T ss_conf 57777998883999908875667877998327999999999999619898878999277699888899999999858899
Q ss_pred EEECCC---CCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCC--CCCCCCCCCCEEEEECCCCCCCHHHHHHHHCC--CC
Q ss_conf 993699---990239999998199199402699999991596--89999766007994259999201899986077--88
Q 005501 426 ALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YN 498 (693)
Q Consensus 426 vi~~~~---~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~--~~ 498 (693)
+++++. +++..+++.|+++++|++.++|++++.|++... ....++++||.++++|+++++++.+++.+.++ ++
T Consensus 324 vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~ 403 (643)
T d1pg4a_ 324 LMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 403 (643)
T ss_dssp EEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCS
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf 99568888799999999999979939980599999998575100245688763799998678999999999998588886
Q ss_pred CEECCCCCCCCCCEECCCCC-CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCC-CCCC
Q ss_conf 53124134434440225886-787764755778899549998799997799998102699824457986322464-2323
Q 005501 499 AIIESCGGTELSSAYIQGSL-LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNA-DHEE 576 (693)
Q Consensus 499 ~i~~~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~i~d~~g~~~p~g~~~iGel~v~~~y~~~~~~~~~~-~~t~ 576 (693)
++++.||+||+++.++...+ ..+...+++|+|++|++++|+|++|++++.|+ .|||++...+.+...+|++. +.+.
T Consensus 404 ~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~--~Gel~v~~~~p~~~~~~~~~~~~~~ 481 (643)
T d1pg4a_ 404 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGAT--EGNLVITDSWPGQARTLFGDHERFE 481 (643)
T ss_dssp CEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSE--EEEEEECSCCTTCCCEETTCHHHHH
T ss_pred EEEEEECHHHCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC--EEEEEEECCCCCCCCCCCCCHHHCH
T ss_conf 39972632120665782488766777776630447978999989998988996--5799995688865550057822343
Q ss_pred CCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEE
Q ss_conf 21222545788414653645999449829999543882124974430377999972049651102899653899995179
Q 005501 577 VYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 656 (693)
Q Consensus 577 ~~f~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l 656 (693)
+.|. ...++||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..| +.+
T Consensus 482 ~~~~----~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~-~~p~V~eaaVvg~~d~~~g-e~~ 555 (643)
T d1pg4a_ 482 QTYF----STFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAI 555 (643)
T ss_dssp HHHH----SSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EEE
T ss_pred HHHC----CCCCCEEECCCEEEECCCCEEEEECCCCCEEEECCEEECHHHHHHHHH-HCCCCCEEEEEEEECCCCC-EEE
T ss_conf 2120----268985874878999899209995266418998999998899999998-4998256999988879998-599
Q ss_pred EEEEEECCCCCCCH---HHHHHHHHHHHHHHCCCCCEECC
Q ss_conf 99999639999996---89999999999842499832109
Q 005501 657 VIFVVLKKGFTSQP---DKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 657 ~a~vv~~~~~~~~~---~~l~~~l~~~L~~~~~P~~~v~~ 693 (693)
+|||+++++...+. .+++++|+++|+.|++|..++++
T Consensus 556 ~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~~vP~~i~~v 595 (643)
T d1pg4a_ 556 YAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWT 595 (643)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEEC
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 9999978999999889999999998538866686489997
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=628.59 Aligned_cols=557 Identities=22% Similarity=0.310 Sum_probs=438.9
Q ss_pred CCHHHHHHHHHHCHHHHHHHHHHHCCCCEECCCEEECCCCCC----CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCEE
Q ss_conf 788899999825999999999854552033066020138888----8999986989954063230167666789999479
Q 005501 119 TSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCILDRTDK----SKHGGTWLPGSVLNIAECCLLPSNHRRKEDNTVA 194 (693)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~A 194 (693)
.+|+.+++++++++.+||.+.+..+ +.|.+++++++..... ..+..+||+++.+|++++++++|+ +++||++|
T Consensus 1 ~~y~~l~~~Si~~~~~Fw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~lN~~~n~ldr~a--~~~pd~~A 77 (640)
T d1ry2a_ 1 QDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHA--LKTPNKKA 77 (640)
T ss_dssp CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHH--TTCTTSEE
T ss_pred CCHHHHHHHHHHCHHHHHHHHHHHH-EEEECCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HHCCCCEE
T ss_conf 9889999999729999999999863-06716872753467766787787785889974539999999999--62989879
Q ss_pred EEEECCCCCCCCCEEECHHHHHHHHHHHHHHHH-HH-CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHH
Q ss_conf 999437888886215409999999999999998-60-6999999998499999999999999907689843899999999
Q 005501 195 IVWREDRCDESAVNLMTYKELREQVMLVANALD-TM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREI 272 (693)
Q Consensus 195 l~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~-~~-v~~gd~V~i~~~~s~~~iv~~lA~~~aG~~~vpl~~~~~~~~l 272 (693)
+++.+. +++..+++||+||.++++++|++|+ ++ +++||+|+|+++|++++++++|||+++|++++|+++.++.+++
T Consensus 78 li~~~~--~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l 155 (640)
T d1ry2a_ 78 IIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSL 155 (640)
T ss_dssp EEEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHH
T ss_pred EEEEEC--CCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCHHHH
T ss_conf 999835--899726874999999999999998983398998999999489899999998750186286067788999999
Q ss_pred HHHHHHCCEEEEEEECCEEECCCCCCCHHHHHHCCC---C--CEEEECCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCC
Q ss_conf 999984190599960642107952454366730089---8--35998187888888777776637887301699999998
Q 005501 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP---L--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNY 347 (693)
Q Consensus 273 ~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (693)
.++++++++++++++.......+.......+.+... . ......................+........ ..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 230 (640)
T d1ry2a_ 156 RDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYK-----TY 230 (640)
T ss_dssp HHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSC-----SC
T ss_pred HHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-----CC
T ss_conf 9999755123321210011002014567777766543024210000013554333334542110000133443-----22
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHH-HCHHCCCCCCCEEEEECCCCCCCHH-HHHHHHHHCCCEE
Q ss_conf 8876689999279991469989866589535068999987-3041378889899982786200225-8879888709789
Q 005501 348 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE-GWAHIDLKVGDVYCWPTNLGWVMGP-VILFSSFLNGATL 425 (693)
Q Consensus 348 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~-~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~l~~G~~l 425 (693)
....+..++++++|+|||||||.||||+++|++++..... ....++++++|++++.+|++|+++. +.++.+|+.|+++
T Consensus 231 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~ 310 (640)
T d1ry2a_ 231 YPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCAT 310 (640)
T ss_dssp CCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEE
T ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCEE
T ss_conf 23577654557789979988899961234565477888888876328983430000156033546899999999719889
Q ss_pred EEECCC---CCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCC--CCCCCCCCCCEEEEECCCCCCCHHHHHHHHCC--CC
Q ss_conf 993699---990239999998199199402699999991596--89999766007994259999201899986077--88
Q 005501 426 ALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YN 498 (693)
Q Consensus 426 vi~~~~---~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~--~~ 498 (693)
++.++. +++..+++.|+++++|.+.++|++++.|.+... ....++++||.++++|+++++++.+++.+.++ ..
T Consensus 311 v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~ 390 (640)
T d1ry2a_ 311 LVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEI 390 (640)
T ss_dssp EEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSS
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 99558877799999999999708628971728999998564111233788735899994345768999999986088764
Q ss_pred CEECCCCCCCCCCEECCCCC--CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEE---CCCCCCCCCCCCCC
Q ss_conf 53124134434440225886--78776475577889954999879999779999810269982---44579863224642
Q 005501 499 AIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLF---PLYLGASDRLLNAD 573 (693)
Q Consensus 499 ~i~~~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~i~d~~g~~~p~g~~~iGel~v~---~~y~~~~~~~~~~~ 573 (693)
.+++.||+||++........ ..+...+++|+|++|++++|+|+++.....+..+.||+++. ++++.+ ++.+++
T Consensus 391 ~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~g--y~~~~e 468 (640)
T d1ry2a_ 391 PIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFART--IWKNHD 468 (640)
T ss_dssp CEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCE--ETTCHH
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCC--CCCCHH
T ss_conf 178520022245422235677767777764432557865899837998525787724899997057875466--146977
Q ss_pred CCCCCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
Q ss_conf 32321222545788414653645999449829999543882124974430377999972049651102899653899995
Q 005501 574 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 653 (693)
Q Consensus 574 ~t~~~f~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~ 653 (693)
.+.+.|.. +..+||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. +||+|.+|+|++++++..|
T Consensus 469 ~t~~~~~~----~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~-~~p~V~~a~Vvg~~d~~~g- 542 (640)
T d1ry2a_ 469 RYLDTYLN----PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFNDDLTG- 542 (640)
T ss_dssp HHHHHHTS----SSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCCCCTTS-
T ss_pred HHHHHHCC----CCCCEEECCCCEEECCCCCEEEEECCCCEEEECCEEECHHHHHHHHH-HCCCCCEEEEEEEECCCCC-
T ss_conf 87864136----89976774982049999878998747788999999998899999998-4998327999988879898-
Q ss_pred EEEEEEEEECCCCCCC----------HHHHHHHHHHHHHHHCCCCCEECC
Q ss_conf 1799999963999999----------689999999999842499832109
Q 005501 654 EVLVIFVVLKKGFTSQ----------PDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 654 ~~l~a~vv~~~~~~~~----------~~~l~~~l~~~L~~~~~P~~~v~~ 693 (693)
+.++|||+++++...+ .++++++++++|+.|++|..++++
T Consensus 543 e~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v 592 (640)
T d1ry2a_ 543 QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILV 592 (640)
T ss_dssp CCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEEC
T ss_pred EEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 48999999737887663315789999999999998548887786099996
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=0 Score=530.68 Aligned_cols=485 Identities=20% Similarity=0.186 Sum_probs=385.2
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCH
Q ss_conf 8698995406323016766678999947999943788888621540999999999999999860-699999999849999
Q 005501 166 TWLPGSVLNIAECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTV 244 (693)
Q Consensus 166 ~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~ 244 (693)
.|.....+|..+ ++++++ +++||++|+++... +.++++||+||.++++++|++|.+. +++||+|+++++|++
T Consensus 4 ~~~~~~~~~l~~-~l~~~a--~~~pd~~av~~~~~----g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~ 76 (534)
T d1v25a_ 4 STMMDEELNLWD-FLERAA--ALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHF 76 (534)
T ss_dssp CCBCCCCCCTHH-HHHHHH--HHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH
T ss_pred CCCCCCCCCHHH-HHHHHH--HHCCCCEEEEEECC----CCEEEECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCH
T ss_conf 864789988999-999999--97599729999069----93689729999999999999999779688799999908989
Q ss_pred HHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHCCEEEEEEECCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCCCCC
Q ss_conf 99999999999076898438999999999999841905999606421079524543667300898359981878888887
Q 005501 245 RAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIP 324 (693)
Q Consensus 245 ~~iv~~lA~~~aG~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (693)
++++++|||+++|++++|+++.++.+++.++++.++++.++++.... .....+..........+.......
T Consensus 77 e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--- 147 (534)
T d1v25a_ 77 RHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKAP--- 147 (534)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCCC---
T ss_pred HHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHHHCCCCCCEEEEEECCCC---
T ss_conf 99999999998492999509999999999999741033323552011------247777502565422577503531---
Q ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHC--HHCCCCCCCEEEE
Q ss_conf 77776637887301699999998887668999927999146998986658953506899998730--4137888989998
Q 005501 325 LREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW--AHIDLKVGDVYCW 402 (693)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~--~~~~~~~~d~~l~ 402 (693)
......... .. .........++++++++|||||||.||||+++|+++++...... ..+.....+++++
T Consensus 148 --~~~~~~~~~-~~-------~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~ 217 (534)
T d1v25a_ 148 --EGYLAYEEA-LG-------EEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLP 217 (534)
T ss_dssp --TTCEEHHHH-CC-------SCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEE
T ss_pred --CCCCCCCCC-CC-------CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf --000000112-34-------45553343567717999743788886521022441665311000000235444663432
Q ss_pred ECCCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEECCC
Q ss_conf 27862002258879888709789993699990239999998199199402699999991596899997660079942599
Q 005501 403 PTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGET 482 (693)
Q Consensus 403 ~~~~~~~~~~~~~~~~l~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~i~~~Ge~ 482 (693)
.+|+.|..+....+.++..|+++++.....++..+...+.++++|.+.++|+++..+.........++++||.+++||++
T Consensus 218 ~~p~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~ 297 (534)
T d1v25a_ 218 VVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSA 297 (534)
T ss_dssp CSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSC
T ss_pred CCCHHHHCCCCCCCEEEEECCEEEECCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCC
T ss_conf 36424414310000001203125621433331000001121244433467156666665420244554431499994687
Q ss_pred CCCCHHHHHHHHCCCCCEECCCCCCCCCCEECCCCCCCC----------CCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 992018999860778853124134434440225886787----------7647557788995499987999977999981
Q 005501 483 SNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQP----------QAFGAFSTATMTAGLVILDECGVPYPDDQPC 552 (693)
Q Consensus 483 l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~----------~~~~~iG~p~~~~~~~i~d~~g~~~p~g~~~ 552 (693)
+++...+++.+. +.++.+.||+||++..++....... ...+++|+|++|++++|+|+++++++.+..+
T Consensus 298 ~~~~~~~~~~~~--~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~~~ 375 (534)
T d1v25a_ 298 APRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKA 375 (534)
T ss_dssp CCHHHHHHHHHT--TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCC
T ss_pred CCHHHHHHHHHH--CCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCE
T ss_conf 887899999984--982365036543356122034676555667311356666400013783899999999997789980
Q ss_pred EEEEEE-----ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHH
Q ss_conf 026998-----244579863224642323212225457884146536459994498299995438821249744303779
Q 005501 553 VGEVGL-----FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 627 (693)
Q Consensus 553 iGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eI 627 (693)
+|||++ ..||++ +++.+...|..+ +||+|||+|++++||+++++||+||+||++|++|+|.||
T Consensus 376 ~Gel~v~g~~v~~gY~~------~~~~t~~~~~~d------g~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eI 443 (534)
T d1v25a_ 376 LGEVQLKGPWITGGYYG------NEEATRSALTPD------GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDL 443 (534)
T ss_dssp CEEEEEESTTSBSSCBT------CHHHHHTTBCTT------SCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHH
T ss_pred EEEEEECCCCCCCEECC------CHHHHHHHCCCC------CCCCCCCEEEECCCCCEEEECCCCCEEEECCEEECHHHH
T ss_conf 68999757864661248------825512305368------987569664898991489913656479989999988999
Q ss_pred HHHHHCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEC
Q ss_conf 99972049651102899653899995179999996399999968999999999984249983210
Q 005501 628 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVW 692 (693)
Q Consensus 628 E~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~~v~ 692 (693)
|++|. +||+|.+|+|++++++..+ +.++|+|+++++.....+.++..+++.|+.|++|..+++
T Consensus 444 E~~l~-~~~~V~~a~v~~~~~~~~~-~~l~a~vv~~~~~~~~~~~~~~~~~~~l~~~~~P~~i~~ 506 (534)
T d1v25a_ 444 ENALM-GHPKVKEAAVVAIPHPKWQ-ERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVF 506 (534)
T ss_dssp HCC-----------CEEEEECSSSS-EEEEECC-------------------CCCTTTSCSBC--
T ss_pred HHHHH-HCCCCCEEEEEEEECCCCC-EEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 99998-1998146999999879999-699999996899999899999999836996778638999
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=0 Score=523.99 Aligned_cols=471 Identities=16% Similarity=0.170 Sum_probs=380.8
Q ss_pred CCCCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEECCCC
Q ss_conf 999947999943788888621540999999999999999860-6999999998499999999999999907689843899
Q 005501 188 KEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS 266 (693)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~~lA~~~aG~~~vpl~~~ 266 (693)
..|+.+|+++.+.+ .++||+||.+++.++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+++.
T Consensus 32 ~~P~~~a~~d~~~~------~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~~G~i~vpl~~~ 105 (541)
T d1lcia_ 32 LVPGTIAFTDAHIE------VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDI 105 (541)
T ss_dssp TSTTCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHHHTCEEEECCTT
T ss_pred CCCCEEEEEECCCC------EEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCEEEEECCCC
T ss_conf 79984999928999------185299999999999999997595997999999089799999999999859099954988
Q ss_pred CCHHHHHHHHHHCCEEEEEEECCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCC--CCC
Q ss_conf 999999999984190599960642107952454366730089835998187888888777776637887301699--999
Q 005501 267 FAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDY--HPR 344 (693)
Q Consensus 267 ~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 344 (693)
++.+++.+++++++++++|+++... +.+..+....+....++....... ......+.+....... ...
T Consensus 106 ~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 175 (541)
T d1lcia_ 106 YNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKTD----YQGFQSMYTFVTSHLPPGFNE 175 (541)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSSC----BTTBEEHHHHHHHHSCTTCCT
T ss_pred CCHHHHHHHHHHCCCEEEEEECCCC------CCCHHCCCCCCCCCEEEEECCCCC----CCCCCHHHHHHHHHCCCCCCC
T ss_conf 8999999999742660886421333------221000123223320354057765----433101455555312543322
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHCH---HCCCCCCCEEEEECCCCCCCHHHHHHHHHHC
Q ss_conf 9988876689999279991469989866589535068999987304---1378889899982786200225887988870
Q 005501 345 PNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLN 421 (693)
Q Consensus 345 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~~~~~~~~~~~~~~~l~~ 421 (693)
....+.....++++++|+|||||||.||+|+++|++++....+... ...+.+++++++..|+.|..+....+..+..
T Consensus 176 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 255 (541)
T d1lcia_ 176 YDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLIC 255 (541)
T ss_dssp TTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 23476445887763799740355433322111221166665666530223334433322221222222222222222222
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCEE
Q ss_conf 97899936999902399999981991994026999999915968999976600799425999920189998607788531
Q 005501 422 GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAII 501 (693)
Q Consensus 422 G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~i~ 501 (693)
|+..+... ..+.......+..+++|.+.++|+++..+.........++++++.+++||+++++...+++.+.++...++
T Consensus 256 ~~~~~~~~-~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~ 334 (541)
T d1lcia_ 256 GFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIR 334 (541)
T ss_dssp TCEEEECS-SCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCB
T ss_pred CCCCCCCC-CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 22222222-22231167787652012233576421122234421001355221788645534454321111246775266
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEC-CCCCCCCCCCCCEEEEEE-----ECCCCCCCCCCCCCCCC
Q ss_conf 241344344402258867877647557788995499987-999977999981026998-----24457986322464232
Q 005501 502 ESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGL-----FPLYLGASDRLLNADHE 575 (693)
Q Consensus 502 ~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~g~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~~~t 575 (693)
+.||+||++..++... ......+++|+|++|++++|+| +++++++.|+. |||++ ..||++ +++.+
T Consensus 335 ~~YG~TE~~~~~~~~~-~~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~--Gel~v~g~~~~~gY~~------~~~~~ 405 (541)
T d1lcia_ 335 QGYGLTETTSAILITP-EGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVN------NPEAT 405 (541)
T ss_dssp CEECCGGGSSCSEECC-CC---CCCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT------BHHHH
T ss_pred ECCCCCCCCCEEEECC-CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCE--EEEEECCCCCCCEECC------CHHHH
T ss_conf 3577652475388667-5568777631055897799997999959999984--7999913863776678------96662
Q ss_pred CCCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEE
Q ss_conf 32122254578841465364599944982999954388212497443037799997204965110289965389999517
Q 005501 576 EVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEV 655 (693)
Q Consensus 576 ~~~f~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~ 655 (693)
...+. +++||+|||+|++++||+++++||+||+||++|++|+|.|||++|. +||+|.+|+|++++++..| +.
T Consensus 406 ~~~~~------~~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~-~~p~V~~~~v~~~~~~~~g-~~ 477 (541)
T d1lcia_ 406 NALID------KDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL-QHPNIFDAGVAGLPDDDAG-EL 477 (541)
T ss_dssp HHHBC------TTSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EE
T ss_pred HHCCC------CCCCCCCCCEEEECCCEEEEEEEEECCEEEECCEEECHHHHHHHHH-HCCCCCEEEEEEEECCCCC-EE
T ss_conf 21004------7754347995178688179993213488999999998999999998-1998027999999879999-79
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCCCEEC
Q ss_conf 99999963999999689999999999842-49983210
Q 005501 656 LVIFVVLKKGFTSQPDKLKMIFSKAIQSK-LNPLFKVW 692 (693)
Q Consensus 656 l~a~vv~~~~~~~~~~~l~~~l~~~L~~~-~~P~~~v~ 692 (693)
++++|+++++...+.++++++++++|..+ ++|..++.
T Consensus 478 ~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~~p~~i~~ 515 (541)
T d1lcia_ 478 PAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVF 515 (541)
T ss_dssp EEEEEEECTTCCCCHHHHHHHHHHHSCGGGSCTTEEEE
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 99999978999999999999998757764569718999
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=0 Score=506.37 Aligned_cols=456 Identities=18% Similarity=0.174 Sum_probs=380.1
Q ss_pred HHHCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 23016766678999947999943788888621540999999999999999860-69999999984999999999999999
Q 005501 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIIL 255 (693)
Q Consensus 177 ~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~~lA~~~ 255 (693)
..+++++ |+++||++|+++.++ ++||+||.++++++|++|+++ +++||+|+++++|++++++++|||++
T Consensus 26 ~~l~~~~--a~~~Pd~~Al~~~~~--------~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~ 95 (514)
T d1amua_ 26 HQLFEEQ--VSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLK 95 (514)
T ss_dssp HHHHHHH--HHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHCCCCEEEEECCE--------EECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 9999999--984899739998994--------681999999999999999974968849999993898999999999998
Q ss_pred HCCEEEECCCCCCHHHHHHHHHHCCEEEEEEECCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 07689843899999999999984190599960642107952454366730089835998187888888777776637887
Q 005501 256 AGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDF 335 (693)
Q Consensus 256 aG~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (693)
+|++++|+++.++.+++.++++++++++++++.... ..+................
T Consensus 96 ~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~~~~~~~~~~~---------------- 150 (514)
T d1amua_ 96 AGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLV---------HLIHNIQFNGQVEIFEEDT---------------- 150 (514)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHTTSCCCSEEEECCCST----------------
T ss_pred HCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEHHHH---------HHHHHHCCCCCCCCCCCCC----------------
T ss_conf 696999868889999999877434874999830245---------5554310222222222212----------------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHCHHCCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 30169999999888766899992799914699898665895350689999873041378889899982786200225887
Q 005501 336 LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL 415 (693)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 415 (693)
... ........+..++++++|+|||||||.||+|+++|+++..........+.....+++++..|++|..++..+
T Consensus 151 -~~~----~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 225 (514)
T d1amua_ 151 -IKI----REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 225 (514)
T ss_dssp -TTT----SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred -CCC----CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCC
T ss_conf -222----456667789985661699973688877532222222222222222222222234544210002322443210
Q ss_pred HHHHHCCCEEEEECC--CCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 988870978999369--999023999999819919940269999999159689999766007994259999201899986
Q 005501 416 FSSFLNGATLALYQG--SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (693)
Q Consensus 416 ~~~l~~G~~lvi~~~--~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~ 493 (693)
+.++..|+++++... ..+...+++.+..+.++.+..+|..... ....++++++.++++|+++++++.+++..
T Consensus 226 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~G~~~~~~~~~~~~~ 299 (514)
T d1amua_ 226 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH------LDPERILSIQTLITAGSATSPSLVNKWKE 299 (514)
T ss_dssp HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTT------SCTTTCCSCSEEEEESSCCCHHHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCC------CCCCCCCCCCEEEEECCCCCHHHHHHHCC
T ss_conf 010221110012344333304555566665312211110110112------22124554538998214589788543135
Q ss_pred HCCCCCEECCCCCCCCCCEECCCCC--CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEE-----ECCCCCCC
Q ss_conf 0778853124134434440225886--7877647557788995499987999977999981026998-----24457986
Q 005501 494 KAWYNAIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGAS 566 (693)
Q Consensus 494 ~~~~~~i~~~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~i~d~~g~~~p~g~~~iGel~v-----~~~y~~~~ 566 (693)
+..+++.||+||++.+.+.... ......++.|.++++..+.+.|+++++++.|+ .|||+| .+||++
T Consensus 300 ---~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~--~GEl~v~~~~~~~gY~~-- 372 (514)
T d1amua_ 300 ---KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGE--AGELCIGGEGLARGYWK-- 372 (514)
T ss_dssp ---TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTC--EEEEEEEETTCCCEETT--
T ss_pred ---CEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEEECCCCEECCCCC--EEEEEECCCCCCCCCCC--
T ss_conf ---51699741256673355411356555576666664023335765114633569997--25999725854464203--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 32246423232122254578841465364599944982999954388212497443037799997204965110289965
Q 005501 567 DRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISV 646 (693)
Q Consensus 567 ~~~~~~~~t~~~f~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~ 646 (693)
++..+.+.|..+++.++++||+|||+|++++||+|+++||+||+||++|++|+|.+||++|. +||+|.+|+|+++
T Consensus 373 ----~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~-~~~~V~~~~V~~~ 447 (514)
T d1amua_ 373 ----RPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILL-KHMYISETAVSVH 447 (514)
T ss_dssp ----CHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEE
T ss_pred ----CCCCCCEEEEECCCCCCCCEEEECCEEEECCCCCEEEEECCCCEEEECCEEECHHHHHHHHH-HCCCCCEEEEEEE
T ss_conf ----54455002675135688836897787899899849999426687998999999999999997-1998268999988
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEECC
Q ss_conf 38999951799999963999999689999999999842499832109
Q 005501 647 SPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVWC 693 (693)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~~v~~ 693 (693)
+++..+ +.++|+|+++++ .+.++++++++++|+.|++|..+++.
T Consensus 448 ~~~~~g-~~~~a~v~~~~~--~~~~~l~~~~~~~l~~~~~p~~i~~v 491 (514)
T d1amua_ 448 KDHQEQ-PYLCAYFVSEKH--IPLEQLRQFSSEELPTYMIPSYFIQL 491 (514)
T ss_dssp ECTTSC-EEEEEEEEESSC--CCHHHHHHHHHHHSCGGGSCSEEEEC
T ss_pred ECCCCC-EEEEEEEECCCC--CCHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 878898-799999982899--99999999998438756586099996
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=0 Score=497.43 Aligned_cols=472 Identities=18% Similarity=0.189 Sum_probs=372.6
Q ss_pred HHHCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 23016766678999947999943788888621540999999999999999860-69999999984999999999999999
Q 005501 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIIL 255 (693)
Q Consensus 177 ~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~~lA~~~ 255 (693)
..++.++ |+++||++|+++.++ ++||+||.++++++|++|.+. +++||+|+++++|++++++++|||++
T Consensus 28 ~~~l~~~--a~~~pd~~Al~~~~~--------~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~ 97 (536)
T d1mdba_ 28 GDLLRDR--AAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFR 97 (536)
T ss_dssp HHHHHHH--HHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHCCCCEEEEECCE--------EECHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 9999999--987799759998997--------684999999999999999975968869999993897999999999998
Q ss_pred HCCEEEECCCCCCHHHHHHHHHHCCEEEEEEECCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 07689843899999999999984190599960642107952454366730089835998187888888777776637887
Q 005501 256 AGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDF 335 (693)
Q Consensus 256 aG~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (693)
+|++++|+++.++.+++.+++++++++.+++++........ ..........+.....+..... .....+.+.
T Consensus 98 ~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 169 (536)
T d1mdba_ 98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR-SLARQVQSKLPTLKNIIVAGEA-------EEFLPLEDL 169 (536)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHH-HHHHHHHHHCTTCCCEEEESCC-------TTSEEGGGC
T ss_pred HCCEEEECCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHH-HHHHHHHHCCCCCCCEEEEECC-------CCCCCHHHC
T ss_conf 59499955987899999999974101367324200122222-3332210100233320232022-------234522220
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHCHHCCCCCCCEEEEECCCCCCCHHH-H
Q ss_conf 301699999998887668999927999146998986658953506899998730413788898999827862002258-8
Q 005501 336 LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPV-I 414 (693)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~ 414 (693)
.. .........++++++|+|||||||.||||++||+++...+.+....+++.+++++++..++.|.+++. .
T Consensus 170 ~~--------~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~ 241 (536)
T d1mdba_ 170 HT--------EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSP 241 (536)
T ss_dssp CC--------CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSS
T ss_pred CC--------CCCCCCCCCCCCHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 35--------7767876675446776412466311000101222222222222222223443332222233322220001
Q ss_pred HHHHHHC-CCEEEEECCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 7988870-978999369999023999999819919940269999999159689999766007994259999201899986
Q 005501 415 LFSSFLN-GATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSS 493 (693)
Q Consensus 415 ~~~~l~~-G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~ 493 (693)
++..++. |.+++..+ .+++..++..+++++++.+..+|+.+..+..........+++++.+++||+++++...+++..
T Consensus 242 ~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~ 320 (536)
T d1mdba_ 242 GVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKA 320 (536)
T ss_dssp HHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHH
T ss_pred CCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCHHH
T ss_conf 1223123554223568-899899999976520233222211466654301333225675505998413334443210121
Q ss_pred HCCCCCEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCC-CCEEEEECCCCCCCCCCCCCEEEEEE-----ECCCCCCCC
Q ss_conf 077885312413443444022588678776475577889-95499987999977999981026998-----244579863
Q 005501 494 KAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATM-TAGLVILDECGVPYPDDQPCVGEVGL-----FPLYLGASD 567 (693)
Q Consensus 494 ~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~-~~~~~i~d~~g~~~p~g~~~iGel~v-----~~~y~~~~~ 567 (693)
.+ +......||.+|.+..+...........+++|+|++ +....|.++++++++.|+ .|||++ ..||.+
T Consensus 321 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~--~Gel~v~g~~~~~gY~~--- 394 (536)
T d1mdba_ 321 VF-GCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGE--TGHLLTRGPYTIRGYYK--- 394 (536)
T ss_dssp HT-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTC--CEEEEEECTTSCSSCTT---
T ss_pred CC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECCCC--CCEEECCCCCCCCCCCC---
T ss_conf 25-7322102343321123321121123456775567778624799769897603422--43141378864332002---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEEC
Q ss_conf 22464232321222545788414653645999449829999543882124974430377999972049651102899653
Q 005501 568 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVS 647 (693)
Q Consensus 568 ~~~~~~~t~~~f~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~ 647 (693)
+...+...+. ..+||+|||++++++||+|+++||+||+||++|++|+|.|||++|. +||+|.+|+|++++
T Consensus 395 ---~~~~~~~~~~------~~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~-~~p~V~~a~vvg~~ 464 (536)
T d1mdba_ 395 ---AEEHNAASFT------EDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMP 464 (536)
T ss_dssp ---CHHHHHHHBC------TTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEE
T ss_pred ---CCCCCCCCCC------CCCCCCCCCCCCCCCCCCEECCCCCCEEEEECCEEECHHHHHHHHH-HCCCCCEEEEEEEE
T ss_conf ---3323311223------5675335752110699866647875508998999998899999998-39982579999988
Q ss_pred CCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHH-HHHHCCCCCEECC
Q ss_conf 899995179999996399999968999999999-9842499832109
Q 005501 648 PAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA-IQSKLNPLFKVWC 693 (693)
Q Consensus 648 ~~~~g~~~l~a~vv~~~~~~~~~~~l~~~l~~~-L~~~~~P~~~v~~ 693 (693)
++..| +.++|||+++++ ..+.++++++++++ |+.|+.|..++.+
T Consensus 465 ~~~~g-~~~~a~v~~~~~-~~~~~~l~~~l~~~~l~~~~~P~~i~~v 509 (536)
T d1mdba_ 465 DQFLG-ERSCVFIIPRDE-APKAAELKAFLRERGLAAYKIPDRVEFV 509 (536)
T ss_dssp ETTTE-EEEEEEEEESSS-CCCHHHHHHHHHHTTCCGGGSCSEEEEC
T ss_pred CCCCC-EEEEEEEEECCC-CCCHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 68898-599999997999-9999999999973699867585589998
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=0 Score=467.69 Aligned_cols=471 Identities=18% Similarity=0.109 Sum_probs=364.8
Q ss_pred HHHCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHHHH
Q ss_conf 23016766678999947999943788888621540999999999999999860-69999999984999999999999999
Q 005501 177 ECCLLPSNHRRKEDNTVAIVWREDRCDESAVNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVIIYLAIIL 255 (693)
Q Consensus 177 ~~~l~~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~~lA~~~ 255 (693)
.+++..+ |+++||++|+++.+.+ +++||+||.++++++|++|++. +++||+|+++++|++++++++|||++
T Consensus 5 ~~~l~~~--a~~~pd~~al~~~~~~------~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 76 (503)
T d3cw9a1 5 NEMLRRA--ATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHR 76 (503)
T ss_dssp HHHHHHH--HHHSTTSEEEEEGGGT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHCCCCEEEEECCCC------CEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 9999999--9868997699989999------3871999999999999999976969979999993898999999999998
Q ss_pred HCCEEEECCCCCCHHHHHHHHHHCCEEEEEEECCEEECCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 07689843899999999999984190599960642107952454366730089835998187888888777776637887
Q 005501 256 AGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDF 335 (693)
Q Consensus 256 aG~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (693)
+|++++|+++.++.+++.++++++++++++++... ..............+ +.+.++
T Consensus 77 ~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~-----------------i~~~~~ 132 (503)
T d3cw9a1 77 LGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGR-------QVADAIFQSGSGARI-----------------IFLGDL 132 (503)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCH-------HHHHHHHHTTCCCEE-----------------EEHHHH
T ss_pred HCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCH-------HHHHHHHHHCCCCCC-----------------CCCHHH
T ss_conf 59599975899999999999972587579951306-------777787653144432-----------------210001
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEECCHHHHHHHHHHCHHCC--CCCCCEEEEECCCCCCCHHH
Q ss_conf 3016999999988876689999279991469989866589535068999987304137--88898999827862002258
Q 005501 336 LSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHID--LKVGDVYCWPTNLGWVMGPV 413 (693)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~--~~~~d~~l~~~~~~~~~~~~ 413 (693)
...................++++++++|||||||.||+|+++|+++...+......+. ....+++++.+|+.|..+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 212 (503)
T d3cw9a1 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFF 212 (503)
T ss_dssp EETTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11100122477544532111333443112244434344311221123332220232322222222223457642222223
Q ss_pred -HHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHCCC--CCCCCCCCCCEEEEECCCCCCCHHHH
Q ss_conf -879888709789993699990239999998199199402699999991596--89999766007994259999201899
Q 005501 414 -ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLW 490 (693)
Q Consensus 414 -~~~~~l~~G~~lvi~~~~~~~~~~~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~lr~i~~~Ge~l~~~~~~~ 490 (693)
..+.+...++.+++.+ ..++..++..+..++++.+..+|+.+..+..... .....+++||.+++||++++++...+
T Consensus 213 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~ 291 (503)
T d3cw9a1 213 AVLVAALALDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLET 291 (503)
T ss_dssp TTHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
T ss_conf 22222212234323466-56857754311110000011222222221244433343446651479974365444532222
Q ss_pred HHHHCCCCCEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 98607788531241344344402258867877647557788995499987999977999981026998244579863224
Q 005501 491 LSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLL 570 (693)
Q Consensus 491 ~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~g~~~p~g~~~iGel~v~~~y~~~~~~~~ 570 (693)
+...+ +..+.+.||.||++.......... ......+.+.+.....+.+..++.++.|+. |++.+.........++.
T Consensus 292 ~~~~~-~~~~~~~yg~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--g~~~~~~~~~~~~~~~~ 367 (503)
T d3cw9a1 292 VHQHL-PGEKVNIYGTTEAMNSLYMRQPKT-GTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFVGYLN 367 (503)
T ss_dssp HHHHC-CSEEEEEEEETTTEEEEEEESCSS-SSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCCCBTT
T ss_pred CCCCC-CCCCCCCCCCCCCCEEEEECCCCC-CCCCCCCCCCCCEEEEEECCCCCCCCCCCC--CCCCCCCCCCCCCCCCC
T ss_conf 22222-211235445421120121012234-444443355421256530246863689852--20011112222222357
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEECCCC
Q ss_conf 64232321222545788414653645999449829999543882124974430377999972049651102899653899
Q 005501 571 NADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAG 650 (693)
Q Consensus 571 ~~~~t~~~f~~~~~~~g~~~y~TGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~ 650 (693)
++..+.+.|. +| ||+|||+|++++||+|+++||+||+||++|++|+|.|||++|. +||+|.+|+|++++++.
T Consensus 368 ~~~~t~~~~~-----~g--~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~-~~p~V~~~~v~~~~~~~ 439 (503)
T d3cw9a1 368 QPQATAEKLQ-----DG--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG-TAPGVTEVVVIGLADQR 439 (503)
T ss_dssp CHHHHHHHEE-----TT--EEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETT
T ss_pred CHHHHHHHHC-----CC--CEECCCCCCCCCCCEEEECCCCCCEEEECCEEECHHHHHHHHH-HCCCCCEEEEEEEECCC
T ss_conf 7343487731-----88--5111354530248858857876786998999998899999998-19981579999788788
Q ss_pred CCCEEEEEEEEECCCCCCCHHHHHHHHH-HHHHHHCCCCCEECC
Q ss_conf 9951799999963999999689999999-999842499832109
Q 005501 651 GGPEVLVIFVVLKKGFTSQPDKLKMIFS-KAIQSKLNPLFKVWC 693 (693)
Q Consensus 651 ~g~~~l~a~vv~~~~~~~~~~~l~~~l~-~~L~~~~~P~~~v~~ 693 (693)
.| +.++|||+++++...+.++++++++ ++|+.|+.|..++.+
T Consensus 440 ~g-~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v 482 (503)
T d3cw9a1 440 WG-QSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFIL 482 (503)
T ss_dssp TE-EEEEEEEEECTTCCCCHHHHHHHHHHSSSCGGGSCSEEEEC
T ss_pred CC-EEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 98-18999999678999999999999986689977783389998
|
| >d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: NRPS condensation domain (amide synthase) domain: VibH species: Vibrio cholerae [TaxId: 666]
Probab=98.46 E-value=2.4e-10 Score=76.04 Aligned_cols=131 Identities=7% Similarity=-0.090 Sum_probs=95.7
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCC--CC--CCC
Q ss_conf 9881999056689999999998630599-836687999996731889988874145678755012378999--96--456
Q 005501 13 LMKVGLKLEEAEEFDKILKQVISCSKGL-DAREIWRELVARKVLKPWHPHGLHQLVYYSVYNDWDASIKGP--PL--YWF 87 (693)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~hq~~pfe~~l~~~l~~~r~~~~~~~plf~v~~~~~~~~~~~--~~--~~~ 87 (693)
.++..+...+..+|.++++++++...++ .||+||++. |++.++..+. ..++ |+++|++++..... .. .+.
T Consensus 104 ~lP~r~~~~~~~t~~~ll~~v~~~~~~~~~h~~~~~~~-i~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 178 (250)
T d1l5aa2 104 SLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQ-IEQDQGLNAE--QSYF--MSPFINILPFESPHFADCQTELK 178 (250)
T ss_dssp EEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHH-HHHHTTCCTT--CCBC--CCSEEEEECCCCCCCTTCEEEEE
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHH-HHHHHCCCCC--CCCC--CCEEEEEECCCCCCCCCCCEEEE
T ss_conf 02699970788979999999999998751114799999-9998568887--8986--56699920167667788701797
Q ss_pred CCCCCCCCCCHHHHHHHH-CCCCCCCC-CCCCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCEECCCEEE
Q ss_conf 890000226568999981-99644555-68998788899999825999999999854552033066020
Q 005501 88 PSLDQSKLTNLGNALEIH-GPKLLGRA-YKDPITSFRLFQKFTVEHPEAYWEIALKEISVVFREAPKCI 154 (693)
Q Consensus 88 ~~~~~~~~~dl~~~~~~~-~~~~~~~~-y~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 154 (693)
. .......|+.+.+... ++.+...+ |+. ++|...+++.+.++|..+++++...++++..++
T Consensus 179 ~-~~~~~~~dl~l~v~~~~~~~l~l~~~y~~-----~~~~~~~i~~l~~~~~~ll~~l~~~p~~~~~~l 241 (250)
T d1l5aa2 179 V-LASGSAEGINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLLARFQQVEQDV 241 (250)
T ss_dssp E-EEECCCCSEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCH
T ss_pred E-EECCCEEEEEEEEEECCCCEEEEEEEEEH-----HHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 6-31233056779999848955999999803-----419999999999999999999995817640023
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=95.27 E-value=0.06 Score=26.58 Aligned_cols=100 Identities=13% Similarity=0.126 Sum_probs=64.1
Q ss_pred CCCCCCEEEEEECCCCCCCC--CEEECHHHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHH-HHHHHHHCCEEEE
Q ss_conf 89999479999437888886--21540999999999999999860-69999999984999999999-9999990768984
Q 005501 187 RKEDNTVAIVWREDRCDESA--VNLMTYKELREQVMLVANALDTM-FSKGDAIAIDMPMTVRAVII-YLAIILAGYVVVS 262 (693)
Q Consensus 187 ~~~pd~~Al~~~~~~~~~~~--~~~lTy~eL~~~~~~lA~~L~~~-v~~gd~V~i~~~~s~~~iv~-~lA~~~aG~~~vp 262 (693)
...++.+|++....| .+|. ...+|++.+..........+... +.+++++...++-...+... .+..+..|+..+
T Consensus 183 ~~~~~~~a~i~~TSG-TTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~- 260 (541)
T d1lcia_ 183 FDRDKTIALIMNSSG-STGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVV- 260 (541)
T ss_dssp CCTTTSEEEEEEC------CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEE-
T ss_pred CCCCCCEEEEEEECC-CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
T ss_conf 588776379974035-543332211122116666566653022333443332222122222222222222222222222-
Q ss_pred CCCCCCHHHHHHHHHHCCEEEEEEEC
Q ss_conf 38999999999999841905999606
Q 005501 263 IADSFAAREIATRLRVSKAKGIFTQD 288 (693)
Q Consensus 263 l~~~~~~~~l~~~l~~~~~~~ii~~~ 288 (693)
.............+...++..+....
T Consensus 261 ~~~~~~~~~~~~~~~~~~~t~~~~~p 286 (541)
T d1lcia_ 261 LMYRFEEELFLRSLQDYKIQSALLVP 286 (541)
T ss_dssp ECSSCCHHHHHHHHHHTTCSEEECCH
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 22222231167787652012233576
|